Query 003100
Match_columns 848
No_of_seqs 492 out of 3886
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0342 ATP-dependent RNA heli 100.0 1.1E-82 2.5E-87 687.7 38.7 464 373-847 76-542 (543)
2 KOG0343 RNA Helicase [RNA proc 100.0 8E-71 1.7E-75 598.7 36.3 436 377-828 67-511 (758)
3 KOG0345 ATP-dependent RNA heli 100.0 1.4E-69 3E-74 581.8 38.6 453 378-844 3-470 (567)
4 KOG0330 ATP-dependent RNA heli 100.0 1.5E-68 3.4E-73 562.5 32.1 371 377-766 59-429 (476)
5 KOG0348 ATP-dependent RNA heli 100.0 5.4E-67 1.2E-71 567.6 38.0 452 368-826 125-660 (708)
6 KOG0331 ATP-dependent RNA heli 100.0 3.2E-67 6.9E-72 587.6 34.8 367 380-755 92-459 (519)
7 KOG0338 ATP-dependent RNA heli 100.0 1.5E-66 3.3E-71 561.2 32.9 361 378-754 180-543 (691)
8 COG0513 SrmB Superfamily II DN 100.0 6.2E-63 1.3E-67 573.8 38.0 362 379-755 29-392 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 1.9E-61 4.1E-66 503.6 28.1 366 377-754 5-371 (442)
10 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-60 5.1E-65 515.4 31.6 365 378-754 244-634 (673)
11 KOG0336 ATP-dependent RNA heli 100.0 3.9E-60 8.5E-65 499.2 27.5 399 339-753 182-581 (629)
12 PRK11634 ATP-dependent RNA hel 100.0 3.4E-58 7.5E-63 543.7 46.8 418 378-818 5-430 (629)
13 PTZ00110 helicase; Provisional 100.0 1.5E-58 3.2E-63 541.8 40.7 368 377-755 128-495 (545)
14 KOG0328 Predicted ATP-dependen 100.0 1.3E-59 2.8E-64 475.9 26.2 362 373-754 21-383 (400)
15 PRK04837 ATP-dependent RNA hel 100.0 6.8E-58 1.5E-62 523.6 39.5 365 377-754 6-372 (423)
16 KOG0347 RNA helicase [RNA proc 100.0 4.6E-59 9.9E-64 507.2 23.3 368 377-753 179-579 (731)
17 PRK11776 ATP-dependent RNA hel 100.0 3.5E-57 7.7E-62 523.2 39.9 356 379-754 4-359 (460)
18 PRK10590 ATP-dependent RNA hel 100.0 8.4E-57 1.8E-61 518.7 39.8 361 380-754 2-362 (456)
19 PRK04537 ATP-dependent RNA hel 100.0 1.9E-56 4E-61 526.0 40.5 364 379-754 9-374 (572)
20 KOG0326 ATP-dependent RNA heli 100.0 1.8E-58 3.9E-63 474.3 19.2 355 379-754 85-439 (459)
21 KOG0335 ATP-dependent RNA heli 100.0 3.1E-57 6.8E-62 499.0 30.0 368 379-753 74-453 (482)
22 KOG0346 RNA helicase [RNA proc 100.0 2.2E-56 4.7E-61 476.0 33.2 365 379-753 19-419 (569)
23 KOG0341 DEAD-box protein abstr 100.0 5E-58 1.1E-62 480.4 18.6 370 375-756 166-541 (610)
24 PLN00206 DEAD-box ATP-dependen 100.0 1E-55 2.2E-60 516.2 40.1 365 377-753 119-484 (518)
25 PRK11192 ATP-dependent RNA hel 100.0 1E-54 2.2E-59 499.3 40.2 359 380-754 2-362 (434)
26 PRK01297 ATP-dependent RNA hel 100.0 1.6E-54 3.4E-59 502.7 41.5 366 378-755 86-453 (475)
27 KOG0339 ATP-dependent RNA heli 100.0 3.8E-55 8.2E-60 472.0 32.2 366 373-752 217-583 (731)
28 KOG0334 RNA helicase [RNA proc 100.0 1.4E-55 3E-60 514.9 30.2 376 377-763 363-740 (997)
29 PTZ00424 helicase 45; Provisio 100.0 1.3E-51 2.9E-56 468.7 38.3 357 378-754 27-384 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 1.3E-51 2.8E-56 432.1 29.0 363 370-754 81-454 (477)
31 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-51 6.1E-56 443.0 26.7 362 380-755 128-552 (620)
32 TIGR03817 DECH_helic helicase/ 100.0 1.5E-49 3.3E-54 478.7 38.0 349 385-754 20-398 (742)
33 KOG0327 Translation initiation 100.0 6.2E-50 1.4E-54 424.0 23.7 355 379-754 26-380 (397)
34 KOG0337 ATP-dependent RNA heli 100.0 1.9E-50 4E-55 429.0 19.5 360 378-755 20-379 (529)
35 KOG4284 DEAD box protein [Tran 100.0 1.8E-49 3.9E-54 437.5 20.9 349 378-746 24-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 4.4E-47 9.6E-52 454.2 38.5 341 384-752 442-795 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 2E-47 4.3E-52 423.2 28.4 366 378-754 131-505 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 7.1E-46 1.5E-50 429.2 37.8 330 396-753 6-342 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.5E-44 3.4E-49 429.0 39.4 337 385-753 8-352 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 9.1E-44 2E-48 422.9 33.6 327 392-753 3-340 (591)
41 PRK13767 ATP-dependent helicas 100.0 1.6E-42 3.5E-47 425.4 40.9 346 386-743 18-397 (876)
42 PRK02362 ski2-like helicase; P 100.0 1.9E-42 4.1E-47 420.7 38.2 337 380-744 2-397 (737)
43 PRK00254 ski2-like helicase; P 100.0 4.2E-41 9.1E-46 407.9 39.1 336 380-745 2-389 (720)
44 KOG0329 ATP-dependent RNA heli 100.0 3.9E-42 8.5E-47 344.2 17.3 324 378-754 41-366 (387)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2E-40 4.3E-45 392.8 32.0 320 397-743 12-390 (844)
46 COG0514 RecQ Superfamily II DN 100.0 4.3E-40 9.3E-45 375.7 31.5 330 392-753 7-346 (590)
47 TIGR00580 mfd transcription-re 100.0 2.1E-39 4.5E-44 394.4 37.3 321 386-743 436-769 (926)
48 COG1201 Lhr Lhr-like helicases 100.0 5.7E-39 1.2E-43 378.5 38.5 345 386-745 8-363 (814)
49 PRK01172 ski2-like helicase; P 100.0 1.2E-39 2.6E-44 393.2 33.7 333 380-745 2-379 (674)
50 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.8E-39 1.7E-43 385.8 33.0 313 404-749 5-341 (819)
51 PRK10917 ATP-dependent DNA hel 100.0 3.4E-38 7.5E-43 378.7 36.3 318 389-742 249-587 (681)
52 PRK10689 transcription-repair 100.0 3.7E-38 8.1E-43 391.0 35.9 318 389-743 589-918 (1147)
53 TIGR00643 recG ATP-dependent D 100.0 5.9E-38 1.3E-42 374.2 35.3 319 389-742 224-564 (630)
54 PRK09751 putative ATP-dependen 100.0 6.1E-38 1.3E-42 390.5 35.5 310 421-742 1-383 (1490)
55 PRK11664 ATP-dependent RNA hel 100.0 3E-38 6.5E-43 381.6 29.6 309 405-746 9-341 (812)
56 PHA02653 RNA helicase NPH-II; 100.0 7.5E-38 1.6E-42 369.3 32.2 313 404-746 167-516 (675)
57 PRK09401 reverse gyrase; Revie 100.0 2.8E-36 6E-41 375.1 32.4 298 397-730 77-430 (1176)
58 PRK14701 reverse gyrase; Provi 100.0 3.3E-36 7.1E-41 381.3 30.7 328 389-749 67-461 (1638)
59 TIGR01587 cas3_core CRISPR-ass 100.0 2.4E-35 5.3E-40 330.4 27.3 302 418-743 1-335 (358)
60 PRK12898 secA preprotein trans 100.0 5.1E-34 1.1E-38 331.9 35.8 323 397-746 100-588 (656)
61 COG1202 Superfamily II helicas 100.0 9.4E-35 2E-39 318.6 26.6 342 379-744 194-553 (830)
62 KOG0349 Putative DEAD-box RNA 100.0 2.7E-35 5.9E-40 312.9 19.7 278 455-743 286-614 (725)
63 COG1205 Distinct helicase fami 100.0 3.7E-34 8E-39 346.6 31.8 346 387-751 56-431 (851)
64 PHA02558 uvsW UvsW helicase; P 100.0 4E-34 8.6E-39 333.2 30.5 312 399-741 112-449 (501)
65 KOG0352 ATP-dependent DNA heli 100.0 4.2E-34 9E-39 304.1 23.7 335 389-754 6-372 (641)
66 COG1111 MPH1 ERCC4-like helica 100.0 7.7E-33 1.7E-37 303.2 31.7 328 399-744 13-481 (542)
67 COG1204 Superfamily II helicas 100.0 1.8E-33 3.9E-38 336.2 29.3 335 385-743 15-407 (766)
68 PRK11131 ATP-dependent RNA hel 100.0 2.5E-33 5.4E-38 343.9 31.1 304 404-746 77-413 (1294)
69 TIGR01054 rgy reverse gyrase. 100.0 4.3E-33 9.4E-38 347.1 31.3 293 389-716 66-409 (1171)
70 PRK09200 preprotein translocas 100.0 7E-33 1.5E-37 328.7 31.0 322 397-746 75-543 (790)
71 KOG0351 ATP-dependent DNA heli 100.0 1.9E-33 4.2E-38 337.9 26.0 336 390-752 252-600 (941)
72 PRK13766 Hef nuclease; Provisi 100.0 3.4E-32 7.3E-37 334.1 37.4 328 398-743 12-478 (773)
73 TIGR03714 secA2 accessory Sec 100.0 4.6E-32 1E-36 318.9 36.1 320 402-746 69-539 (762)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-32 2.4E-37 307.9 29.0 301 405-729 1-357 (357)
75 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-31 2.8E-36 307.5 35.1 316 396-743 293-722 (1248)
76 TIGR00963 secA preprotein tran 100.0 1.4E-31 3E-36 312.9 34.2 324 397-747 53-520 (745)
77 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.3E-32 1.6E-36 332.2 30.4 305 407-746 73-406 (1283)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 6.3E-31 1.4E-35 305.4 27.3 338 396-746 105-493 (1230)
79 KOG0353 ATP-dependent DNA heli 100.0 4.3E-31 9.4E-36 276.9 23.2 341 382-746 74-469 (695)
80 KOG0354 DEAD-box like helicase 100.0 1.8E-30 4E-35 299.7 29.6 331 397-745 58-530 (746)
81 PRK05580 primosome assembly pr 100.0 7.4E-29 1.6E-33 297.1 35.0 321 401-752 144-557 (679)
82 TIGR00603 rad25 DNA repair hel 100.0 2.9E-29 6.2E-34 295.4 26.3 310 400-744 254-607 (732)
83 KOG0951 RNA helicase BRR2, DEA 100.0 2.9E-28 6.2E-33 285.9 25.0 358 386-759 296-719 (1674)
84 KOG0926 DEAH-box RNA helicase 100.0 2.9E-28 6.3E-33 275.3 23.8 330 385-743 243-703 (1172)
85 KOG0923 mRNA splicing factor A 100.0 6.6E-28 1.4E-32 268.5 24.1 326 397-756 261-616 (902)
86 PRK09694 helicase Cas3; Provis 100.0 6.9E-27 1.5E-31 282.4 33.4 319 399-733 284-664 (878)
87 KOG0922 DEAH-box RNA helicase 100.0 2E-27 4.4E-32 268.2 26.8 312 402-746 52-392 (674)
88 COG1643 HrpA HrpA-like helicas 100.0 2.4E-27 5.3E-32 282.3 27.2 311 403-745 52-388 (845)
89 cd00268 DEADc DEAD-box helicas 100.0 4.7E-27 1E-31 242.0 24.5 199 381-590 1-199 (203)
90 KOG0948 Nuclear exosomal RNA h 100.0 2.3E-28 4.9E-33 275.0 15.8 309 401-743 129-538 (1041)
91 COG1200 RecG RecG-like helicas 100.0 9.3E-27 2E-31 265.6 29.0 324 386-745 247-592 (677)
92 PRK04914 ATP-dependent helicas 100.0 3.1E-26 6.8E-31 278.3 34.7 322 401-744 152-603 (956)
93 TIGR00595 priA primosomal prot 100.0 2.9E-26 6.2E-31 265.9 29.5 294 420-744 1-381 (505)
94 COG4581 Superfamily II RNA hel 99.9 2.5E-26 5.3E-31 275.0 26.7 321 393-744 112-537 (1041)
95 PRK13104 secA preprotein trans 99.9 1.6E-25 3.4E-30 265.5 31.2 324 402-746 83-589 (896)
96 COG1061 SSL2 DNA or RNA helica 99.9 1E-25 2.2E-30 258.2 26.9 294 400-730 35-375 (442)
97 PRK12899 secA preprotein trans 99.9 9E-25 1.9E-29 258.4 34.5 148 382-547 65-228 (970)
98 KOG0924 mRNA splicing factor A 99.9 3.7E-25 7.9E-30 246.8 26.1 315 397-744 352-697 (1042)
99 PRK12904 preprotein translocas 99.9 1.5E-24 3.2E-29 257.2 31.7 322 397-746 78-575 (830)
100 PRK12906 secA preprotein trans 99.9 9.8E-25 2.1E-29 257.7 28.2 321 397-746 77-555 (796)
101 PRK11448 hsdR type I restricti 99.9 1E-23 2.2E-28 261.7 31.2 315 401-732 413-801 (1123)
102 COG1197 Mfd Transcription-repa 99.9 1.6E-23 3.4E-28 251.0 31.6 322 386-744 579-913 (1139)
103 COG4098 comFA Superfamily II D 99.9 1.9E-22 4.1E-27 211.3 30.5 303 401-743 97-415 (441)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 5.7E-24 1.2E-28 211.8 18.6 166 403-581 1-168 (169)
105 PLN03142 Probable chromatin-re 99.9 2.8E-22 6E-27 244.8 35.5 321 401-743 169-598 (1033)
106 KOG0950 DNA polymerase theta/e 99.9 4.4E-23 9.6E-28 240.0 24.6 344 385-757 207-624 (1008)
107 KOG0920 ATP-dependent RNA heli 99.9 1.2E-22 2.6E-27 241.2 28.3 322 400-745 172-545 (924)
108 PRK13107 preprotein translocas 99.9 1.4E-22 3E-27 239.8 27.5 324 402-746 83-593 (908)
109 KOG0925 mRNA splicing factor A 99.9 1.7E-21 3.7E-26 211.2 22.9 329 378-743 24-386 (699)
110 COG1203 CRISPR-associated heli 99.9 4.1E-21 8.9E-26 232.6 27.6 331 402-745 196-551 (733)
111 KOG2340 Uncharacterized conser 99.9 8.7E-20 1.9E-24 200.0 25.4 353 398-751 213-675 (698)
112 TIGR01407 dinG_rel DnaQ family 99.9 3.7E-19 8.1E-24 219.7 33.4 335 387-743 232-813 (850)
113 COG1110 Reverse gyrase [DNA re 99.8 3.5E-19 7.5E-24 208.5 29.4 282 397-715 79-416 (1187)
114 PRK12900 secA preprotein trans 99.8 8.4E-20 1.8E-24 217.0 23.3 128 615-746 578-713 (1025)
115 TIGR00631 uvrb excinuclease AB 99.8 2.7E-19 5.8E-24 212.7 27.4 133 618-753 425-562 (655)
116 KOG0385 Chromatin remodeling c 99.8 5.8E-19 1.3E-23 200.6 25.0 322 401-744 167-599 (971)
117 COG1198 PriA Primosomal protei 99.8 3E-18 6.5E-23 202.2 28.8 324 401-754 198-613 (730)
118 KOG4150 Predicted ATP-dependen 99.8 3E-19 6.4E-24 196.2 18.1 350 390-752 275-650 (1034)
119 PF06862 DUF1253: Protein of u 99.8 3.5E-18 7.5E-23 191.4 26.9 306 447-752 29-423 (442)
120 PRK05298 excinuclease ABC subu 99.8 7.4E-18 1.6E-22 201.7 31.3 123 619-744 430-557 (652)
121 KOG0387 Transcription-coupled 99.8 5.8E-18 1.3E-22 193.6 27.0 321 401-743 205-657 (923)
122 COG4096 HsdR Type I site-speci 99.8 1.5E-18 3.2E-23 200.9 21.4 304 400-731 164-525 (875)
123 KOG0949 Predicted helicase, DE 99.8 4E-18 8.7E-23 197.4 23.4 163 402-578 512-674 (1330)
124 TIGR00348 hsdR type I site-spe 99.8 2.3E-17 4.9E-22 198.2 27.6 307 402-731 239-634 (667)
125 PRK12326 preprotein translocas 99.8 2.6E-16 5.6E-21 183.0 34.3 320 397-746 75-549 (764)
126 PRK07246 bifunctional ATP-depe 99.8 9.1E-17 2E-21 196.3 29.4 322 396-743 241-782 (820)
127 smart00487 DEXDc DEAD-like hel 99.8 2.3E-17 4.9E-22 166.7 20.1 180 396-588 3-183 (201)
128 COG0556 UvrB Helicase subunit 99.8 5.2E-17 1.1E-21 179.3 22.2 166 565-743 386-556 (663)
129 KOG0384 Chromodomain-helicase 99.7 4.5E-17 9.6E-22 193.4 18.6 327 400-750 369-819 (1373)
130 PRK13103 secA preprotein trans 99.7 2E-15 4.4E-20 179.6 31.6 318 397-746 79-593 (913)
131 PRK12903 secA preprotein trans 99.7 6.9E-15 1.5E-19 173.3 31.0 320 397-746 75-541 (925)
132 cd00079 HELICc Helicase superf 99.7 2.9E-16 6.2E-21 149.1 12.4 120 619-740 12-131 (131)
133 KOG1123 RNA polymerase II tran 99.7 1.2E-16 2.5E-21 174.4 10.3 325 373-732 276-635 (776)
134 PRK08074 bifunctional ATP-depe 99.7 1.7E-14 3.6E-19 179.5 30.1 122 621-743 737-892 (928)
135 KOG0390 DNA repair protein, SN 99.7 2.3E-14 4.9E-19 168.7 28.4 335 401-755 238-721 (776)
136 CHL00122 secA preprotein trans 99.6 3.4E-14 7.4E-19 168.5 25.8 281 397-703 73-490 (870)
137 KOG0953 Mitochondrial RNA heli 99.6 1E-14 2.2E-19 161.7 19.8 291 416-765 191-497 (700)
138 KOG0392 SNF2 family DNA-depend 99.6 1.9E-14 4.2E-19 170.6 22.5 328 401-743 975-1453(1549)
139 PF00271 Helicase_C: Helicase 99.6 1.2E-15 2.6E-20 132.4 8.7 78 655-732 1-78 (78)
140 TIGR03117 cas_csf4 CRISPR-asso 99.6 2.8E-13 6E-18 159.4 31.2 108 624-734 458-604 (636)
141 PRK12902 secA preprotein trans 99.6 2.1E-13 4.4E-18 161.6 29.8 128 402-547 86-218 (939)
142 KOG0389 SNF2 family DNA-depend 99.6 5E-14 1.1E-18 161.6 22.4 327 397-744 396-888 (941)
143 KOG1000 Chromatin remodeling p 99.6 5.3E-14 1.1E-18 153.9 20.0 311 401-736 198-593 (689)
144 cd00046 DEXDc DEAD-like helica 99.6 7.6E-14 1.7E-18 132.5 16.2 144 417-575 1-144 (144)
145 COG4889 Predicted helicase [Ge 99.5 3.4E-14 7.4E-19 163.2 13.4 321 391-732 151-573 (1518)
146 PRK11747 dinG ATP-dependent DN 99.5 6.3E-12 1.4E-16 152.0 33.6 118 620-743 519-673 (697)
147 COG1199 DinG Rad3-related DNA 99.5 1.2E-12 2.6E-17 158.5 26.1 112 619-734 462-607 (654)
148 KOG0951 RNA helicase BRR2, DEA 99.5 7.4E-13 1.6E-17 157.6 22.7 314 401-752 1143-1502(1674)
149 PF04851 ResIII: Type III rest 99.5 1.3E-13 2.8E-18 138.6 12.8 157 401-576 3-183 (184)
150 KOG0386 Chromatin remodeling c 99.5 5.4E-13 1.2E-17 156.5 16.9 321 400-741 393-833 (1157)
151 KOG0391 SNF2 family DNA-depend 99.5 8.9E-12 1.9E-16 146.8 24.7 109 636-744 1275-1387(1958)
152 TIGR00604 rad3 DNA repair heli 99.4 2.4E-11 5.2E-16 147.9 28.8 121 620-741 506-671 (705)
153 smart00490 HELICc helicase sup 99.4 2.9E-13 6.3E-18 117.4 8.2 81 652-732 2-82 (82)
154 TIGR02562 cas3_yersinia CRISPR 99.4 1.3E-11 2.7E-16 148.6 24.6 329 391-733 398-881 (1110)
155 PRK12901 secA preprotein trans 99.4 2.8E-11 6.1E-16 145.0 24.3 127 615-746 608-743 (1112)
156 KOG1002 Nucleotide excision re 99.3 1.1E-10 2.5E-15 127.9 22.9 106 638-743 639-748 (791)
157 KOG0388 SNF2 family DNA-depend 99.3 6.4E-11 1.4E-15 134.2 21.0 123 619-743 1028-1153(1185)
158 PRK14873 primosome assembly pr 99.3 6.7E-11 1.5E-15 141.1 19.5 136 423-582 167-310 (665)
159 PF02399 Herpes_ori_bp: Origin 99.3 3.5E-10 7.6E-15 133.4 23.1 291 416-744 49-388 (824)
160 KOG0921 Dosage compensation co 99.2 2.7E-10 5.8E-15 132.3 15.5 322 403-743 380-773 (1282)
161 KOG4439 RNA polymerase II tran 99.2 1.8E-09 3.9E-14 123.2 21.3 119 620-739 730-851 (901)
162 COG0553 HepA Superfamily II DN 99.1 6.3E-09 1.4E-13 130.1 22.3 119 619-739 692-815 (866)
163 PF00176 SNF2_N: SNF2 family N 99.0 3E-09 6.4E-14 115.8 13.0 160 405-576 1-173 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.0 2.5E-09 5.4E-14 102.2 10.0 136 415-579 3-140 (148)
165 KOG1015 Transcription regulato 99.0 3.4E-08 7.3E-13 115.5 20.6 116 622-739 1129-1270(1567)
166 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.5E-13 111.3 13.6 75 398-478 6-84 (289)
167 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.5E-13 111.3 13.6 75 398-478 6-84 (289)
168 COG0610 Type I site-specific r 98.9 4.7E-07 1E-11 113.0 28.9 315 417-753 274-661 (962)
169 COG0653 SecA Preprotein transl 98.9 7.1E-08 1.5E-12 115.0 19.6 325 402-745 79-546 (822)
170 PF07517 SecA_DEAD: SecA DEAD- 98.7 2.7E-07 5.9E-12 98.4 14.8 133 397-547 74-210 (266)
171 KOG1016 Predicted DNA helicase 98.4 2.5E-05 5.5E-10 90.4 20.9 105 638-742 720-845 (1387)
172 PRK15483 type III restriction- 98.4 3.6E-06 7.7E-11 102.8 14.7 68 687-754 501-578 (986)
173 KOG0952 DNA/RNA helicase MER3/ 98.3 1.4E-07 3E-12 112.4 0.2 232 401-657 927-1173(1230)
174 TIGR00596 rad1 DNA repair prot 98.1 5.5E-05 1.2E-09 92.5 17.2 39 508-549 8-46 (814)
175 PF13086 AAA_11: AAA domain; P 98.1 5.2E-05 1.1E-09 79.0 13.5 74 401-477 1-75 (236)
176 COG3587 Restriction endonuclea 98.0 0.00053 1.1E-08 81.4 21.6 68 687-754 483-563 (985)
177 PF12340 DUF3638: Protein of u 97.9 7E-05 1.5E-09 77.8 11.0 127 381-521 5-144 (229)
178 PF13307 Helicase_C_2: Helicas 97.9 3.4E-05 7.3E-10 77.3 8.3 105 636-742 8-148 (167)
179 PF13604 AAA_30: AAA domain; P 97.9 5E-05 1.1E-09 78.1 9.5 126 401-574 1-130 (196)
180 PF02562 PhoH: PhoH-like prote 97.8 8.8E-05 1.9E-09 76.3 9.0 138 399-572 2-153 (205)
181 PF13872 AAA_34: P-loop contai 97.7 0.00037 8E-09 75.0 11.7 175 383-581 25-226 (303)
182 PRK10536 hypothetical protein; 97.5 0.0012 2.6E-08 70.0 13.2 146 397-571 55-209 (262)
183 PF09848 DUF2075: Uncharacteri 97.4 0.00051 1.1E-08 77.2 9.6 108 418-561 3-117 (352)
184 TIGR01448 recD_rel helicase, p 97.4 0.0018 3.9E-08 79.3 14.9 131 397-574 320-452 (720)
185 PRK10875 recD exonuclease V su 97.4 0.0012 2.6E-08 79.0 12.5 145 402-573 153-300 (615)
186 KOG1802 RNA helicase nonsense 97.4 0.00062 1.3E-08 78.6 9.5 76 393-478 402-477 (935)
187 TIGR01447 recD exodeoxyribonuc 97.3 0.0018 4E-08 77.2 13.4 144 404-573 148-294 (586)
188 PRK13889 conjugal transfer rel 97.3 0.0076 1.7E-07 75.5 18.1 126 397-574 343-470 (988)
189 KOG1803 DNA helicase [Replicat 97.2 0.0012 2.5E-08 76.2 9.1 65 401-476 185-250 (649)
190 PF13245 AAA_19: Part of AAA d 97.1 0.0016 3.4E-08 56.3 7.4 60 409-475 2-62 (76)
191 KOG1001 Helicase-like transcri 97.1 0.0035 7.6E-08 75.4 12.2 101 638-738 540-642 (674)
192 KOG1132 Helicase of the DEAD s 97.1 0.0034 7.4E-08 75.1 11.5 39 401-439 21-63 (945)
193 COG3421 Uncharacterized protei 97.0 0.0039 8.5E-08 71.6 10.7 148 421-578 2-168 (812)
194 PF00580 UvrD-helicase: UvrD/R 96.9 0.0022 4.7E-08 70.1 7.7 125 402-544 1-125 (315)
195 TIGR02768 TraA_Ti Ti-type conj 96.9 0.016 3.4E-07 71.5 15.7 61 401-472 352-413 (744)
196 PF13401 AAA_22: AAA domain; P 96.7 0.0079 1.7E-07 56.9 9.2 18 415-432 3-20 (131)
197 PF05970 PIF1: PIF1-like helic 96.5 0.0069 1.5E-07 68.5 8.3 60 401-471 1-66 (364)
198 PRK13826 Dtr system oriT relax 96.5 0.042 9.1E-07 69.5 15.4 138 385-574 366-505 (1102)
199 KOG1805 DNA replication helica 96.4 0.013 2.8E-07 70.9 10.0 137 385-548 657-810 (1100)
200 smart00492 HELICc3 helicase su 96.3 0.022 4.7E-07 55.4 9.5 50 666-715 26-78 (141)
201 COG1875 NYN ribonuclease and A 96.3 0.034 7.4E-07 61.1 11.8 152 397-572 224-385 (436)
202 smart00491 HELICc2 helicase su 96.3 0.02 4.3E-07 55.8 8.8 41 675-715 32-79 (142)
203 PF13959 DUF4217: Domain of un 96.2 0.01 2.2E-07 49.6 5.7 56 772-829 5-64 (65)
204 PRK12723 flagellar biosynthesi 96.2 0.12 2.5E-06 58.8 15.5 54 533-586 253-309 (388)
205 PRK14974 cell division protein 96.1 0.067 1.5E-06 59.6 13.3 55 533-587 221-276 (336)
206 PF14617 CMS1: U3-containing 9 96.1 0.011 2.4E-07 62.8 6.7 87 454-545 125-212 (252)
207 cd00009 AAA The AAA+ (ATPases 96.1 0.08 1.7E-06 49.9 12.2 17 416-432 19-35 (151)
208 KOG1131 RNA polymerase II tran 96.0 0.12 2.6E-06 58.8 14.2 75 397-478 12-90 (755)
209 PRK08181 transposase; Validate 95.9 0.086 1.9E-06 56.9 12.5 47 533-579 166-213 (269)
210 TIGR02760 TraI_TIGR conjugativ 95.9 0.57 1.2E-05 63.7 22.5 211 401-659 429-648 (1960)
211 PRK04296 thymidine kinase; Pro 95.9 0.013 2.9E-07 59.9 5.8 53 512-574 62-114 (190)
212 TIGR00376 DNA helicase, putati 95.9 0.025 5.4E-07 68.5 8.9 67 400-477 156-223 (637)
213 PRK06526 transposase; Provisio 95.8 0.038 8.3E-07 59.2 9.4 46 533-578 158-204 (254)
214 PRK06921 hypothetical protein; 95.8 0.11 2.4E-06 56.1 12.8 28 415-443 116-143 (266)
215 TIGR01075 uvrD DNA helicase II 95.8 0.028 6.2E-07 69.3 9.4 72 400-480 3-74 (715)
216 PHA02533 17 large terminase pr 95.8 0.12 2.6E-06 61.3 13.8 149 401-574 59-209 (534)
217 PRK14722 flhF flagellar biosyn 95.6 0.14 3E-06 57.8 13.0 54 533-586 214-269 (374)
218 PRK05703 flhF flagellar biosyn 95.6 0.31 6.7E-06 56.2 15.9 67 513-586 285-354 (424)
219 PRK11889 flhF flagellar biosyn 95.5 0.24 5.2E-06 55.9 14.2 71 512-586 302-374 (436)
220 PRK07952 DNA replication prote 95.5 0.18 3.8E-06 53.7 12.6 47 533-579 161-209 (244)
221 PF00448 SRP54: SRP54-type pro 95.4 0.2 4.3E-06 51.5 12.6 53 533-585 82-135 (196)
222 smart00382 AAA ATPases associa 95.3 0.081 1.8E-06 49.3 8.7 17 416-432 2-18 (148)
223 KOG0383 Predicted helicase [Ge 95.3 0.0036 7.7E-08 74.7 -0.9 78 620-700 616-696 (696)
224 PRK10919 ATP-dependent DNA hel 95.2 0.042 9.2E-07 67.1 7.9 71 401-480 2-72 (672)
225 PRK11054 helD DNA helicase IV; 95.2 0.081 1.8E-06 64.5 10.0 75 397-480 192-266 (684)
226 COG1419 FlhF Flagellar GTP-bin 94.9 0.54 1.2E-05 53.0 14.6 130 416-586 203-335 (407)
227 PF13871 Helicase_C_4: Helicas 94.8 0.078 1.7E-06 57.1 7.4 74 678-751 52-137 (278)
228 cd01120 RecA-like_NTPases RecA 94.7 0.28 6.1E-06 47.5 10.8 45 533-577 84-138 (165)
229 PRK08116 hypothetical protein; 94.7 0.34 7.5E-06 52.3 12.3 47 533-580 177-226 (268)
230 TIGR01074 rep ATP-dependent DN 94.7 0.12 2.5E-06 63.4 9.6 70 402-480 2-71 (664)
231 KOG1133 Helicase of the DEAD s 94.6 0.78 1.7E-05 54.4 15.3 123 616-742 609-778 (821)
232 PRK12377 putative replication 94.5 0.29 6.3E-06 52.3 11.1 42 532-574 161-205 (248)
233 PF03354 Terminase_1: Phage Te 94.5 0.23 5.1E-06 58.2 11.4 151 404-572 1-160 (477)
234 PRK11773 uvrD DNA-dependent he 94.5 0.075 1.6E-06 65.6 7.6 72 400-480 8-79 (721)
235 PRK08727 hypothetical protein; 94.5 0.2 4.4E-06 52.9 9.9 47 533-579 92-140 (233)
236 PRK06835 DNA replication prote 94.3 0.29 6.2E-06 54.5 10.7 47 533-579 245-293 (329)
237 PRK06893 DNA replication initi 94.2 0.17 3.6E-06 53.4 8.4 46 533-578 90-137 (229)
238 TIGR03420 DnaA_homol_Hda DnaA 94.1 0.3 6.4E-06 50.9 10.1 42 535-576 91-133 (226)
239 PRK05642 DNA replication initi 94.1 0.2 4.2E-06 53.1 8.7 45 533-577 96-141 (234)
240 PF05621 TniB: Bacterial TniB 94.0 0.32 7E-06 52.9 10.2 117 417-568 62-181 (302)
241 cd01124 KaiC KaiC is a circadi 94.0 0.42 9.2E-06 48.0 10.6 48 419-478 2-49 (187)
242 KOG0342 ATP-dependent RNA heli 93.9 0.0067 1.4E-07 68.4 -2.9 104 21-124 121-227 (543)
243 TIGR01073 pcrA ATP-dependent D 93.8 0.23 4.9E-06 61.5 9.8 72 400-480 3-74 (726)
244 PRK07764 DNA polymerase III su 93.8 0.33 7.1E-06 60.4 11.0 39 533-572 119-157 (824)
245 PRK00149 dnaA chromosomal repl 93.7 0.36 7.7E-06 56.3 10.6 48 534-581 211-260 (450)
246 PRK14087 dnaA chromosomal repl 93.6 0.56 1.2E-05 54.6 12.0 48 533-580 205-254 (450)
247 KOG0298 DEAD box-containing he 93.6 0.21 4.5E-06 62.5 8.7 163 416-586 374-561 (1394)
248 PRK14712 conjugal transfer nic 93.6 0.41 9E-06 62.8 11.8 65 401-472 835-901 (1623)
249 COG1484 DnaC DNA replication p 93.5 0.44 9.6E-06 51.1 10.2 50 413-474 102-151 (254)
250 KOG0989 Replication factor C, 93.5 0.16 3.4E-06 54.9 6.5 45 532-577 127-171 (346)
251 PRK13709 conjugal transfer nic 93.4 0.56 1.2E-05 62.4 12.6 65 401-472 967-1033(1747)
252 PRK07471 DNA polymerase III su 93.4 0.46 9.9E-06 53.7 10.5 138 418-574 43-180 (365)
253 PRK12402 replication factor C 93.4 0.62 1.3E-05 51.7 11.5 39 533-572 124-162 (337)
254 PRK14086 dnaA chromosomal repl 93.3 0.46 1E-05 56.7 10.7 50 533-582 376-427 (617)
255 PRK05580 primosome assembly pr 93.3 0.39 8.4E-06 58.8 10.5 92 619-713 174-266 (679)
256 TIGR00362 DnaA chromosomal rep 93.1 0.5 1.1E-05 54.2 10.5 47 534-580 199-247 (405)
257 PTZ00112 origin recognition co 93.1 0.99 2.1E-05 55.6 12.9 23 419-442 784-806 (1164)
258 PRK06731 flhF flagellar biosyn 93.0 1.7 3.6E-05 47.1 13.6 130 415-586 74-208 (270)
259 PHA02544 44 clamp loader, smal 92.8 0.87 1.9E-05 50.2 11.5 39 534-572 100-138 (316)
260 PRK07003 DNA polymerase III su 92.8 0.89 1.9E-05 55.3 12.0 39 533-572 118-156 (830)
261 PRK08084 DNA replication initi 92.7 0.65 1.4E-05 49.2 9.8 43 535-577 98-142 (235)
262 TIGR02785 addA_Gpos recombinat 92.7 0.27 5.9E-06 64.2 8.4 126 401-545 1-126 (1232)
263 PRK00411 cdc6 cell division co 92.7 0.8 1.7E-05 52.2 11.3 25 416-441 55-79 (394)
264 TIGR01547 phage_term_2 phage t 92.6 0.71 1.5E-05 52.7 10.8 146 418-587 3-152 (396)
265 PRK08769 DNA polymerase III su 92.6 0.73 1.6E-05 51.1 10.4 144 399-574 2-152 (319)
266 PHA03368 DNA packaging termina 92.5 1.4 3E-05 52.8 12.9 139 413-577 251-392 (738)
267 PRK09183 transposase/IS protei 92.5 0.69 1.5E-05 49.7 9.9 20 413-432 99-118 (259)
268 PF05876 Terminase_GpA: Phage 92.5 0.31 6.7E-06 58.2 7.8 126 401-547 16-147 (557)
269 TIGR00595 priA primosomal prot 92.5 0.56 1.2E-05 55.4 9.8 91 619-712 9-100 (505)
270 PRK04195 replication factor C 92.4 0.96 2.1E-05 53.2 11.8 43 378-432 10-55 (482)
271 PF00308 Bac_DnaA: Bacterial d 92.4 0.53 1.2E-05 49.3 8.6 49 532-580 95-145 (219)
272 PRK12727 flagellar biosynthesi 92.4 3.6 7.9E-05 48.4 16.0 55 379-433 299-367 (559)
273 PRK12422 chromosomal replicati 92.3 0.84 1.8E-05 53.0 10.8 54 533-586 201-256 (445)
274 PRK10917 ATP-dependent DNA hel 92.3 0.46 9.9E-06 58.3 9.2 76 636-711 309-389 (681)
275 cd00561 CobA_CobO_BtuR ATP:cor 92.3 0.77 1.7E-05 45.6 9.0 54 532-585 93-148 (159)
276 PRK12323 DNA polymerase III su 92.2 0.65 1.4E-05 55.7 9.8 40 533-573 123-162 (700)
277 PLN03025 replication factor C 92.2 1.6 3.4E-05 48.4 12.5 37 534-571 99-135 (319)
278 COG4962 CpaF Flp pilus assembl 92.2 0.25 5.3E-06 54.4 5.9 60 397-468 153-213 (355)
279 PRK14088 dnaA chromosomal repl 92.0 1.4 3E-05 51.2 12.2 52 534-585 194-247 (440)
280 PRK13833 conjugal transfer pro 91.8 0.5 1.1E-05 52.4 7.9 65 392-467 121-186 (323)
281 PRK08903 DnaA regulatory inact 91.8 0.72 1.6E-05 48.3 8.8 43 534-577 90-133 (227)
282 PRK12724 flagellar biosynthesi 91.7 2.6 5.6E-05 48.3 13.6 53 534-586 299-356 (432)
283 PF06745 KaiC: KaiC; InterPro 91.7 0.63 1.4E-05 48.7 8.3 135 415-575 18-160 (226)
284 COG1444 Predicted P-loop ATPas 91.6 2.4 5.2E-05 51.7 13.8 149 394-576 207-357 (758)
285 PRK00771 signal recognition pa 91.6 2.3 5E-05 49.2 13.3 52 535-586 176-228 (437)
286 PHA03333 putative ATPase subun 91.6 3.9 8.5E-05 49.3 15.2 139 414-576 185-333 (752)
287 PRK14721 flhF flagellar biosyn 91.6 2.2 4.8E-05 49.0 13.0 19 416-434 191-209 (420)
288 PRK13894 conjugal transfer ATP 91.5 0.51 1.1E-05 52.4 7.6 66 391-467 124-190 (319)
289 PRK05986 cob(I)alamin adenolsy 91.5 0.92 2E-05 46.3 8.8 54 533-586 114-169 (191)
290 PF05127 Helicase_RecD: Helica 91.5 0.057 1.2E-06 54.4 0.1 124 420-576 1-124 (177)
291 TIGR02760 TraI_TIGR conjugativ 91.5 0.96 2.1E-05 61.6 11.5 64 400-472 1018-1085(1960)
292 PRK14723 flhF flagellar biosyn 91.3 2 4.3E-05 52.8 12.9 20 416-435 185-204 (767)
293 PRK14873 primosome assembly pr 91.3 1.2 2.5E-05 54.4 11.0 93 618-713 171-265 (665)
294 PF13173 AAA_14: AAA domain 91.3 1.3 2.8E-05 41.9 9.3 38 534-574 61-98 (128)
295 PRK05707 DNA polymerase III su 91.3 0.66 1.4E-05 51.7 8.2 41 401-442 3-47 (328)
296 PRK12726 flagellar biosynthesi 91.2 2.4 5.3E-05 47.9 12.4 18 416-433 206-223 (407)
297 PRK14958 DNA polymerase III su 91.2 0.86 1.9E-05 53.9 9.5 39 533-572 118-156 (509)
298 TIGR02881 spore_V_K stage V sp 91.0 1 2.2E-05 48.4 9.2 18 416-433 42-59 (261)
299 PRK14964 DNA polymerase III su 91.0 1.4 3.1E-05 51.5 11.0 43 532-576 114-156 (491)
300 PF13177 DNA_pol3_delta2: DNA 91.0 2.6 5.5E-05 41.9 11.3 44 533-577 101-144 (162)
301 KOG0701 dsRNA-specific nucleas 90.7 0.16 3.5E-06 65.8 3.0 94 639-732 294-399 (1606)
302 cd01122 GP4d_helicase GP4d_hel 90.7 0.83 1.8E-05 49.1 8.3 20 413-432 27-46 (271)
303 TIGR03015 pepcterm_ATPase puta 90.6 2.1 4.5E-05 45.8 11.2 31 402-432 24-59 (269)
304 PRK08691 DNA polymerase III su 90.6 1.1 2.4E-05 54.2 9.8 40 532-572 117-156 (709)
305 COG1435 Tdk Thymidine kinase [ 90.6 1.2 2.5E-05 45.5 8.4 101 418-560 6-107 (201)
306 PRK09112 DNA polymerase III su 90.5 1.8 4E-05 48.6 10.9 39 533-572 140-178 (351)
307 TIGR02782 TrbB_P P-type conjug 90.4 0.97 2.1E-05 49.7 8.4 67 391-468 108-175 (299)
308 PRK09111 DNA polymerase III su 90.3 1.6 3.4E-05 52.6 10.8 40 532-572 130-169 (598)
309 PF00004 AAA: ATPase family as 90.3 1 2.2E-05 42.1 7.6 16 535-550 59-74 (132)
310 COG1474 CDC6 Cdc6-related prot 90.3 3.2 7E-05 47.0 12.7 27 417-444 43-69 (366)
311 PRK06871 DNA polymerase III su 90.3 1.8 4E-05 48.0 10.5 40 532-572 105-144 (325)
312 PRK07994 DNA polymerase III su 90.3 4.2 9.2E-05 49.3 14.2 38 533-571 118-155 (647)
313 PRK14956 DNA polymerase III su 90.2 0.91 2E-05 52.8 8.3 28 533-561 120-147 (484)
314 COG1110 Reverse gyrase [DNA re 90.2 0.65 1.4E-05 57.3 7.3 62 636-697 124-191 (1187)
315 TIGR00064 ftsY signal recognit 90.0 4.8 0.0001 43.6 13.3 54 533-586 153-213 (272)
316 PRK14960 DNA polymerase III su 89.8 1.2 2.6E-05 53.5 9.0 40 533-574 117-156 (702)
317 PRK11331 5-methylcytosine-spec 89.8 1.3 2.8E-05 51.1 9.0 31 403-433 181-211 (459)
318 PRK14952 DNA polymerase III su 89.7 2.4 5.2E-05 50.9 11.5 42 533-576 117-158 (584)
319 TIGR00643 recG ATP-dependent D 89.6 0.97 2.1E-05 55.0 8.4 76 636-711 283-363 (630)
320 COG3973 Superfamily I DNA and 89.6 2.1 4.5E-05 50.4 10.3 90 384-479 187-284 (747)
321 TIGR01425 SRP54_euk signal rec 89.5 4.6 9.9E-05 46.6 13.1 53 534-586 182-235 (429)
322 PRK05973 replicative DNA helic 89.4 2.7 5.8E-05 44.6 10.5 82 384-478 23-114 (237)
323 TIGR00708 cobA cob(I)alamin ad 89.1 1.6 3.4E-05 44.0 8.0 53 533-585 96-150 (173)
324 COG1198 PriA Primosomal protei 89.0 1.2 2.6E-05 54.4 8.3 92 616-710 226-318 (730)
325 PRK14951 DNA polymerase III su 89.0 4.6 9.9E-05 48.8 13.2 42 533-576 123-164 (618)
326 PRK14961 DNA polymerase III su 88.9 1.2 2.7E-05 50.3 8.1 38 533-571 118-155 (363)
327 TIGR00580 mfd transcription-re 88.8 1.6 3.5E-05 55.1 9.7 75 637-711 500-579 (926)
328 KOG1133 Helicase of the DEAD s 88.8 0.5 1.1E-05 55.9 4.8 42 401-442 15-60 (821)
329 PRK08939 primosomal protein Dn 88.7 3.1 6.8E-05 45.9 10.8 49 532-580 215-266 (306)
330 PRK00440 rfc replication facto 88.7 5.5 0.00012 43.7 12.9 38 534-572 102-139 (319)
331 PRK14949 DNA polymerase III su 88.5 1.8 3.8E-05 53.8 9.4 43 533-577 118-160 (944)
332 COG3972 Superfamily I DNA and 88.4 1.8 3.8E-05 49.7 8.6 79 390-479 152-230 (660)
333 PRK06645 DNA polymerase III su 88.4 2 4.3E-05 50.7 9.5 18 417-434 44-61 (507)
334 TIGR02928 orc1/cdc6 family rep 88.4 3.4 7.4E-05 46.4 11.2 25 417-442 41-65 (365)
335 PRK06090 DNA polymerase III su 88.2 2 4.4E-05 47.6 8.9 41 532-573 106-146 (319)
336 PF03969 AFG1_ATPase: AFG1-lik 88.2 5.8 0.00013 44.8 12.7 45 534-579 127-172 (362)
337 CHL00181 cbbX CbbX; Provisiona 88.1 6.3 0.00014 43.1 12.7 18 416-433 59-76 (287)
338 PF01695 IstB_IS21: IstB-like 88.0 0.99 2.1E-05 45.7 5.9 49 411-471 42-90 (178)
339 TIGR03877 thermo_KaiC_1 KaiC d 87.8 2.9 6.4E-05 44.2 9.6 52 415-478 20-71 (237)
340 PRK13341 recombination factor 87.5 2.7 5.8E-05 51.8 10.2 44 534-582 109-152 (725)
341 PRK14963 DNA polymerase III su 87.5 2.2 4.7E-05 50.4 9.1 23 419-442 39-61 (504)
342 PRK14955 DNA polymerase III su 87.5 4 8.6E-05 46.8 11.1 41 532-574 125-165 (397)
343 PF05729 NACHT: NACHT domain 87.4 5 0.00011 38.9 10.5 26 418-444 2-27 (166)
344 PRK06995 flhF flagellar biosyn 87.4 4 8.7E-05 47.7 11.1 19 416-434 256-274 (484)
345 PRK14959 DNA polymerase III su 87.3 2.3 5E-05 51.1 9.2 43 533-577 118-160 (624)
346 PRK08533 flagellar accessory p 87.2 5 0.00011 42.3 10.9 19 414-432 22-40 (230)
347 cd03115 SRP The signal recogni 87.2 10 0.00022 37.7 12.6 53 534-586 82-135 (173)
348 PRK07133 DNA polymerase III su 87.2 1.9 4.1E-05 52.7 8.5 44 532-577 116-159 (725)
349 KOG0991 Replication factor C, 87.1 1.4 3.1E-05 45.9 6.3 41 533-574 112-152 (333)
350 COG2805 PilT Tfp pilus assembl 87.1 1 2.2E-05 48.8 5.4 49 378-445 105-153 (353)
351 PRK05563 DNA polymerase III su 87.0 8 0.00017 46.4 13.6 43 532-576 117-159 (559)
352 COG2804 PulE Type II secretory 86.9 0.92 2E-05 52.5 5.4 40 402-442 242-283 (500)
353 PTZ00293 thymidine kinase; Pro 86.9 2.1 4.5E-05 44.5 7.5 38 416-464 4-41 (211)
354 PRK06964 DNA polymerase III su 86.9 4.5 9.9E-05 45.3 10.8 41 532-573 130-170 (342)
355 COG0470 HolB ATPase involved i 86.8 2 4.3E-05 47.2 8.0 39 533-572 108-146 (325)
356 PRK10867 signal recognition pa 86.8 8.8 0.00019 44.4 13.3 16 418-433 102-117 (433)
357 PRK14957 DNA polymerase III su 86.7 5.4 0.00012 47.5 11.8 39 533-572 118-156 (546)
358 PRK14969 DNA polymerase III su 86.7 3.5 7.6E-05 49.0 10.4 39 533-572 118-156 (527)
359 COG2109 BtuR ATP:corrinoid ade 86.7 5.7 0.00012 40.3 10.1 54 533-586 121-176 (198)
360 cd01121 Sms Sms (bacterial rad 86.7 3.8 8.3E-05 46.5 10.2 52 415-478 81-132 (372)
361 TIGR00678 holB DNA polymerase 86.6 5.5 0.00012 40.3 10.5 41 532-574 94-134 (188)
362 PRK14950 DNA polymerase III su 86.6 2.9 6.3E-05 50.5 9.7 41 532-574 118-158 (585)
363 PRK14962 DNA polymerase III su 86.4 2.2 4.8E-05 49.9 8.4 16 418-433 38-53 (472)
364 PRK14965 DNA polymerase III su 86.3 13 0.00028 44.8 15.0 44 532-577 117-160 (576)
365 TIGR03689 pup_AAA proteasome A 86.3 2.2 4.7E-05 50.3 8.2 17 416-432 216-232 (512)
366 KOG0060 Long-chain acyl-CoA tr 86.2 0.96 2.1E-05 52.8 5.1 46 532-581 586-631 (659)
367 KOG1513 Nuclear helicase MOP-3 86.1 0.53 1.1E-05 56.3 3.0 161 401-574 264-453 (1300)
368 COG0513 SrmB Superfamily II DN 86.1 2.1 4.6E-05 50.7 8.1 87 620-710 80-179 (513)
369 PRK11823 DNA repair protein Ra 86.0 3 6.4E-05 48.6 9.1 52 415-478 79-130 (446)
370 COG2256 MGS1 ATPase related to 85.9 2.7 5.8E-05 47.3 8.1 17 417-433 49-65 (436)
371 PRK10416 signal recognition pa 85.9 14 0.0003 41.1 13.9 54 533-586 195-255 (318)
372 TIGR02525 plasmid_TraJ plasmid 85.9 1.7 3.6E-05 49.3 6.8 27 416-443 149-175 (372)
373 PF01637 Arch_ATPase: Archaeal 85.9 2.2 4.8E-05 43.9 7.4 56 513-575 104-165 (234)
374 PRK06067 flagellar accessory p 85.9 2.1 4.6E-05 45.0 7.3 17 416-432 25-41 (234)
375 KOG0733 Nuclear AAA ATPase (VC 85.8 2.2 4.9E-05 50.2 7.7 56 374-432 503-561 (802)
376 COG0593 DnaA ATPase involved i 85.8 3.3 7.2E-05 47.2 9.1 50 534-583 175-226 (408)
377 PHA03372 DNA packaging termina 85.8 6.6 0.00014 46.6 11.6 135 414-576 200-338 (668)
378 PF00437 T2SE: Type II/IV secr 85.7 2 4.3E-05 46.3 7.1 44 413-467 124-167 (270)
379 cd03239 ABC_SMC_head The struc 85.7 1.6 3.5E-05 44.1 6.0 41 533-573 115-156 (178)
380 cd01130 VirB11-like_ATPase Typ 85.7 1.3 2.7E-05 45.1 5.2 32 401-432 9-41 (186)
381 PF05496 RuvB_N: Holliday junc 85.7 3 6.6E-05 43.7 8.0 15 418-432 52-66 (233)
382 PRK10689 transcription-repair 85.5 1.8 3.8E-05 56.1 7.5 76 636-711 648-728 (1147)
383 PRK07993 DNA polymerase III su 85.5 1.6 3.5E-05 48.8 6.3 40 532-572 106-145 (334)
384 PRK13342 recombination factor 85.3 4 8.8E-05 47.0 9.7 16 417-432 37-52 (413)
385 PRK11034 clpA ATP-dependent Cl 85.0 6.1 0.00013 49.0 11.5 45 536-580 280-328 (758)
386 PF03237 Terminase_6: Terminas 85.0 18 0.00039 40.0 14.7 116 420-559 1-122 (384)
387 PF03266 NTPase_1: NTPase; In 84.9 1.9 4.1E-05 43.2 5.9 28 533-560 94-123 (168)
388 PRK13851 type IV secretion sys 84.8 1.5 3.3E-05 49.1 5.7 45 412-468 158-202 (344)
389 PHA00729 NTP-binding motif con 84.7 6.2 0.00013 41.5 9.8 73 509-584 60-137 (226)
390 TIGR03499 FlhF flagellar biosy 84.6 4.2 9E-05 44.3 9.0 18 416-433 194-211 (282)
391 PF02534 T4SS-DNA_transf: Type 84.6 0.88 1.9E-05 53.2 4.0 49 417-478 45-93 (469)
392 TIGR02880 cbbX_cfxQ probable R 84.6 4.1 8.9E-05 44.4 8.9 18 416-433 58-75 (284)
393 PF00265 TK: Thymidine kinase; 84.6 2.6 5.6E-05 42.6 6.8 35 419-464 4-38 (176)
394 PRK13900 type IV secretion sys 84.5 3 6.4E-05 46.6 7.9 20 413-432 157-176 (332)
395 TIGR00959 ffh signal recogniti 84.4 13 0.00029 43.0 13.2 16 418-433 101-116 (428)
396 cd00267 ABC_ATPase ABC (ATP-bi 84.4 1.5 3.3E-05 42.9 5.0 44 534-577 98-141 (157)
397 PRK08451 DNA polymerase III su 84.3 6.5 0.00014 46.7 10.9 40 532-572 115-154 (535)
398 PRK08699 DNA polymerase III su 84.2 9.6 0.00021 42.4 11.8 42 532-575 111-152 (325)
399 cd01126 TraG_VirD4 The TraG/Tr 84.2 0.62 1.3E-05 53.0 2.4 47 418-477 1-47 (384)
400 PRK14954 DNA polymerase III su 84.1 5.5 0.00012 48.2 10.4 40 532-572 125-164 (620)
401 KOG2028 ATPase related to the 84.1 4.5 9.8E-05 44.9 8.6 50 534-588 222-271 (554)
402 PRK03992 proteasome-activating 83.9 3.9 8.5E-05 46.7 8.7 17 416-432 165-181 (389)
403 TIGR00767 rho transcription te 83.7 2.2 4.9E-05 48.5 6.4 20 413-432 165-184 (415)
404 COG1200 RecG RecG-like helicas 83.6 3.9 8.5E-05 49.0 8.6 77 635-711 309-390 (677)
405 cd00984 DnaB_C DnaB helicase C 83.2 6.1 0.00013 41.6 9.3 28 414-442 11-38 (242)
406 PRK14948 DNA polymerase III su 83.2 16 0.00034 44.5 13.8 28 533-561 120-147 (620)
407 COG0210 UvrD Superfamily I DNA 83.0 2.9 6.4E-05 51.1 7.7 71 401-480 2-72 (655)
408 cd03247 ABCC_cytochrome_bd The 82.8 5.9 0.00013 39.7 8.6 42 532-574 114-155 (178)
409 TIGR03878 thermo_KaiC_2 KaiC d 82.7 5.4 0.00012 42.9 8.7 18 415-432 35-52 (259)
410 COG0552 FtsY Signal recognitio 82.7 28 0.0006 38.7 14.0 130 418-586 141-280 (340)
411 PRK05896 DNA polymerase III su 82.6 5.7 0.00012 47.7 9.5 43 533-577 118-160 (605)
412 TIGR02858 spore_III_AA stage I 82.5 6.5 0.00014 42.6 9.3 24 408-431 100-126 (270)
413 KOG0732 AAA+-type ATPase conta 82.5 2.7 5.9E-05 52.7 7.0 60 372-432 255-315 (1080)
414 TIGR01243 CDC48 AAA family ATP 82.2 6.4 0.00014 48.9 10.3 52 378-432 174-228 (733)
415 cd03228 ABCC_MRP_Like The MRP 82.2 4.4 9.4E-05 40.4 7.4 42 532-574 112-153 (171)
416 PRK13897 type IV secretion sys 82.2 1.2 2.5E-05 53.7 3.7 50 416-478 158-207 (606)
417 PRK09087 hypothetical protein; 82.2 4 8.6E-05 43.0 7.3 41 536-578 89-130 (226)
418 TIGR02868 CydC thiol reductant 82.0 4.4 9.5E-05 48.2 8.6 18 414-431 359-376 (529)
419 TIGR03881 KaiC_arch_4 KaiC dom 82.0 11 0.00023 39.4 10.6 18 415-432 19-36 (229)
420 TIGR02524 dot_icm_DotB Dot/Icm 81.6 2 4.3E-05 48.5 5.1 18 415-432 133-150 (358)
421 cd03246 ABCC_Protease_Secretio 81.5 3.5 7.7E-05 41.2 6.4 43 532-574 112-154 (173)
422 COG1219 ClpX ATP-dependent pro 81.5 1.2 2.5E-05 48.6 2.9 26 415-442 96-121 (408)
423 KOG0347 RNA helicase [RNA proc 81.4 6.1 0.00013 46.0 8.7 69 639-711 265-346 (731)
424 TIGR02655 circ_KaiC circadian 81.4 7.7 0.00017 45.7 10.1 52 415-478 262-313 (484)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 81.4 6.6 0.00014 38.1 8.1 39 533-574 87-125 (144)
426 PF06733 DEAD_2: DEAD_2; Inte 81.3 0.97 2.1E-05 45.3 2.3 42 507-549 119-160 (174)
427 COG4626 Phage terminase-like p 81.2 8.6 0.00019 45.2 10.1 150 401-573 61-223 (546)
428 KOG0331 ATP-dependent RNA heli 81.2 9.8 0.00021 44.7 10.5 90 637-730 165-272 (519)
429 PF01443 Viral_helicase1: Vira 81.2 1.7 3.7E-05 45.3 4.2 14 419-432 1-14 (234)
430 TIGR01243 CDC48 AAA family ATP 81.2 4.9 0.00011 49.9 8.8 51 379-432 450-503 (733)
431 PF02572 CobA_CobO_BtuR: ATP:c 81.0 11 0.00023 38.1 9.5 54 532-585 94-149 (172)
432 cd00268 DEADc DEAD-box helicas 80.8 8.8 0.00019 39.0 9.2 71 636-710 68-148 (203)
433 PRK07940 DNA polymerase III su 80.6 8.8 0.00019 43.9 9.9 44 533-578 116-159 (394)
434 PF13555 AAA_29: P-loop contai 80.4 2 4.3E-05 35.6 3.4 25 416-442 23-47 (62)
435 COG1132 MdlB ABC-type multidru 80.4 6.4 0.00014 47.2 9.2 40 532-571 481-520 (567)
436 COG1074 RecB ATP-dependent exo 80.2 3.1 6.7E-05 54.2 6.8 61 415-481 15-75 (1139)
437 COG1618 Predicted nucleotide k 80.2 2.4 5.2E-05 42.0 4.4 120 418-562 7-130 (179)
438 TIGR03880 KaiC_arch_3 KaiC dom 80.0 8 0.00017 40.3 8.8 51 416-478 16-66 (224)
439 cd03276 ABC_SMC6_euk Eukaryoti 79.9 10 0.00023 38.9 9.4 47 533-579 130-179 (198)
440 TIGR03819 heli_sec_ATPase heli 79.8 3.3 7.2E-05 46.4 6.1 40 391-432 154-194 (340)
441 PRK05342 clpX ATP-dependent pr 79.8 4.1 8.8E-05 46.9 6.9 17 416-432 108-124 (412)
442 PRK06305 DNA polymerase III su 79.8 12 0.00026 43.7 10.8 37 533-570 120-156 (451)
443 COG2909 MalT ATP-dependent tra 79.7 4.5 9.8E-05 49.6 7.4 42 535-576 130-171 (894)
444 KOG1132 Helicase of the DEAD s 79.5 38 0.00083 41.9 14.8 94 620-715 545-655 (945)
445 COG4555 NatA ABC-type Na+ tran 79.5 5 0.00011 41.3 6.5 54 532-585 149-202 (245)
446 COG1197 Mfd Transcription-repa 79.5 5 0.00011 50.9 7.9 75 636-710 642-721 (1139)
447 TIGR02397 dnaX_nterm DNA polym 79.4 7.2 0.00016 43.6 8.7 15 418-432 38-52 (355)
448 KOG0058 Peptide exporter, ABC 79.2 3.7 8E-05 49.4 6.4 41 532-573 620-660 (716)
449 PRK14970 DNA polymerase III su 79.2 16 0.00036 41.1 11.6 16 417-432 40-55 (367)
450 PRK11634 ATP-dependent RNA hel 79.1 6.8 0.00015 47.7 8.9 71 636-710 73-154 (629)
451 TIGR03600 phage_DnaB phage rep 79.1 11 0.00025 43.4 10.4 27 414-441 192-218 (421)
452 PRK14953 DNA polymerase III su 79.1 9.8 0.00021 44.8 9.9 41 532-574 117-157 (486)
453 PRK10865 protein disaggregatio 79.1 15 0.00033 46.4 12.2 17 416-432 199-215 (857)
454 PRK14701 reverse gyrase; Provi 79.0 5.8 0.00013 53.1 8.8 61 636-696 121-187 (1638)
455 TIGR00763 lon ATP-dependent pr 79.0 10 0.00023 47.3 10.7 17 416-432 347-363 (775)
456 cd01129 PulE-GspE PulE/GspE Th 79.0 2.8 6E-05 45.3 5.0 38 403-441 65-104 (264)
457 PRK10436 hypothetical protein; 79.0 2.5 5.4E-05 49.3 4.9 38 403-441 203-242 (462)
458 PF12846 AAA_10: AAA-like doma 79.0 2.8 6.1E-05 45.2 5.1 43 416-469 1-43 (304)
459 PRK04328 hypothetical protein; 78.7 4.1 8.9E-05 43.5 6.2 52 415-478 22-73 (249)
460 cd03216 ABC_Carb_Monos_I This 78.7 2.9 6.2E-05 41.5 4.7 43 533-575 99-141 (163)
461 cd03229 ABC_Class3 This class 78.5 3.4 7.3E-05 41.5 5.2 48 532-579 116-164 (178)
462 COG4185 Uncharacterized protei 78.5 4 8.7E-05 40.3 5.3 18 419-436 5-22 (187)
463 KOG0739 AAA+-type ATPase [Post 78.4 1.1E+02 0.0023 33.7 16.1 47 379-431 130-181 (439)
464 PRK07399 DNA polymerase III su 78.4 9.1 0.0002 42.4 8.9 39 533-573 123-161 (314)
465 TIGR03346 chaperone_ClpB ATP-d 78.4 16 0.00035 46.2 12.2 17 416-432 194-210 (852)
466 PRK13764 ATPase; Provisional 78.2 4.1 8.9E-05 48.9 6.5 26 415-441 256-281 (602)
467 TIGR01420 pilT_fam pilus retra 78.1 4.4 9.5E-05 45.5 6.4 18 415-432 121-138 (343)
468 PRK08058 DNA polymerase III su 78.0 15 0.00032 41.0 10.5 40 532-572 108-147 (329)
469 PRK07414 cob(I)yrinic acid a,c 78.0 9.1 0.0002 38.7 7.9 52 533-584 114-167 (178)
470 PF10412 TrwB_AAD_bind: Type I 77.9 2.5 5.4E-05 48.2 4.5 48 412-470 11-58 (386)
471 PRK06647 DNA polymerase III su 77.9 9.7 0.00021 45.7 9.5 42 532-575 117-158 (563)
472 PRK04841 transcriptional regul 77.8 19 0.0004 45.8 12.7 41 536-576 123-163 (903)
473 TIGR00635 ruvB Holliday juncti 77.8 4.3 9.3E-05 44.4 6.1 16 417-432 31-46 (305)
474 TIGR02639 ClpA ATP-dependent C 77.7 19 0.0004 44.8 12.3 17 416-432 203-219 (731)
475 PF03796 DnaB_C: DnaB-like hel 77.5 7.7 0.00017 41.4 7.9 115 416-549 19-145 (259)
476 KOG0344 ATP-dependent RNA heli 77.5 32 0.00069 40.6 12.9 98 425-544 366-466 (593)
477 cd01128 rho_factor Transcripti 77.4 4.8 0.0001 43.0 6.2 19 413-431 13-31 (249)
478 PRK04537 ATP-dependent RNA hel 77.3 11 0.00024 45.4 9.9 73 457-543 259-334 (572)
479 TIGR03345 VI_ClpV1 type VI sec 77.3 8.4 0.00018 48.6 9.1 15 418-432 598-612 (852)
480 KOG2004 Mitochondrial ATP-depe 77.3 18 0.0004 43.7 11.1 32 401-432 415-454 (906)
481 PRK13850 type IV secretion sys 77.1 2.2 4.7E-05 52.0 3.8 49 416-477 139-187 (670)
482 KOG2543 Origin recognition com 76.8 15 0.00033 41.3 9.7 46 534-579 115-162 (438)
483 PRK06904 replicative DNA helic 76.7 23 0.00051 41.5 12.1 26 415-441 220-245 (472)
484 TIGR02538 type_IV_pilB type IV 76.5 3.1 6.8E-05 49.9 4.9 44 394-441 295-340 (564)
485 PF03668 ATP_bind_2: P-loop AT 76.4 42 0.00092 36.5 12.9 27 646-672 256-282 (284)
486 COG0630 VirB11 Type IV secreto 76.0 3.8 8.3E-05 45.3 5.1 73 378-467 109-182 (312)
487 TIGR02533 type_II_gspE general 75.9 3.1 6.6E-05 49.0 4.5 36 394-432 221-258 (486)
488 KOG0741 AAA+-type ATPase [Post 75.9 14 0.00031 43.0 9.5 50 383-432 493-554 (744)
489 PRK11776 ATP-dependent RNA hel 75.8 8.7 0.00019 44.8 8.3 71 637-711 72-153 (460)
490 TIGR00416 sms DNA repair prote 75.5 11 0.00024 44.0 8.9 52 415-478 93-144 (454)
491 cd01393 recA_like RecA is a b 75.4 7 0.00015 40.6 6.7 19 416-434 19-37 (226)
492 cd03289 ABCC_CFTR2 The CFTR su 75.4 4.6 0.0001 43.8 5.5 42 532-574 154-195 (275)
493 KOG2036 Predicted P-loop ATPas 75.2 41 0.00089 40.6 13.1 43 690-732 548-592 (1011)
494 PRK14971 DNA polymerase III su 75.2 33 0.00072 41.7 13.2 41 532-574 119-159 (614)
495 COG2255 RuvB Holliday junction 75.2 6.7 0.00015 42.4 6.3 16 417-432 53-68 (332)
496 PF14516 AAA_35: AAA-like doma 74.8 3.5 7.5E-05 46.0 4.4 40 404-444 18-58 (331)
497 COG0466 Lon ATP-dependent Lon 74.8 9.6 0.00021 46.0 8.1 54 487-549 379-432 (782)
498 PF10593 Z1: Z1 domain; Inter 74.7 9.4 0.0002 40.6 7.4 79 661-744 110-193 (239)
499 TIGR00602 rad24 checkpoint pro 74.6 28 0.00061 42.3 12.2 47 378-432 80-126 (637)
500 PRK09354 recA recombinase A; P 74.3 8.9 0.00019 43.0 7.4 43 415-468 59-101 (349)
No 1
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-82 Score=687.70 Aligned_cols=464 Identities=47% Similarity=0.696 Sum_probs=431.7
Q ss_pred CCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCC
Q 003100 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (848)
Q Consensus 373 ~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~ 452 (848)
.++.....|+++.|++.++++++.+||..||++|+.+|+.++.|+|+++.|.||||||+||+||+++.+++.....+
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--- 152 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--- 152 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC---
Confidence 34555678999999999999999999999999999999999999999999999999999999999999998876544
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 453 ~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.++.+||||||||||.|++.++++++.+++++.+.+++||.+...++..+.+ +++|+|+|||||++||++.+++. .
T Consensus 153 -~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~--~ 228 (543)
T KOG0342|consen 153 -NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFL--F 228 (543)
T ss_pred -CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcch--h
Confidence 5789999999999999999999999999989999999999999999999987 79999999999999999998754 4
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC 612 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~ 612 (848)
..++++|+||||+++++||+..+.+|+..+|+.+|+++||||.+.+|+.+++..++.++.++++++.....++..+.|.|
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgy 308 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGY 308 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEE
Q 003100 613 LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV 692 (848)
Q Consensus 613 ~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLV 692 (848)
++++.+.++..++.+|+++.. .+++||||+|+..+.+++.+|+...++|..|||+++|..|..++..|++.+..|||
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~---~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~ 385 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIK---RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV 385 (543)
T ss_pred EeccccchHHHHHHHHHHhcC---CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEE
Confidence 999999999999999998753 38999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccCCCCcCCCCCCChHHHHH
Q 003100 693 TSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLDKLQLPHLNPEIQLQ 772 (848)
Q Consensus 693 aTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~~l~~~~~~~~~~~~~~~ 772 (848)
||||++||+|||+|++|||||+|.++.+||||+|||||.|..|.+++|+.|+|.+|+++|+++++++++++...++..+.
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~ 465 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQS 465 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred HHHHHHHHhHHHHHHH---HHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCCCHHHHHhcCCCCCCCceec
Q 003100 773 MDNHMAKIDNNVKEAA---YHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRPPPLFRKTALKMGLKDIPGIRLR 847 (848)
Q Consensus 773 ~~~~l~~~~~~~~e~~---~~s~l~~y~~~~~~~~~~~~~~~l~~~la~s~GL~~~P~v~~~~~~k~gl~~~pgl~i~ 847 (848)
+...|...+..+++++ |.+|++||+++........+..+++ ++|+|||++.||.++..+..+||+++.+|++.+
T Consensus 466 ~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp~v~~~i~~~~~~k~~~~~~~~ 542 (543)
T KOG0342|consen 466 QLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPPAVDLKIDGKMGLKGNKGLRGR 542 (543)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCccceeeccccccccCCCCCCCC
Confidence 6666655555555554 5669999999876666667889988 999999999999999999999999999999875
No 2
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8e-71 Score=598.72 Aligned_cols=436 Identities=36% Similarity=0.591 Sum_probs=382.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
....|.+++|+..++++|+..+|..||.+|+++||..++|+||+..|.|||||||||++|+|++|++..+... .|+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~----DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPT----DGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCC----CCc
Confidence 4467999999999999999999999999999999999999999999999999999999999999999877643 467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
.||||+||||||.|+++.+.+..+++ .+..++++||.+...+..++. .++|+|||||||+.||....+ +...++.
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~--~mNILVCTPGRLLQHmde~~~--f~t~~lQ 217 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERIS--QMNILVCTPGRLLQHMDENPN--FSTSNLQ 217 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhh--cCCeEEechHHHHHHhhhcCC--CCCCcce
Confidence 89999999999999999999998876 899999999999877666664 489999999999999998764 4567899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
++|+||||++++|||...+..|+..+|+.+|++|||||.+..+..+++..+. ++.+|.+.......+|..+.|+|++++
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~-dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC-CCcEEEEeccccccChhhhhheEEEEe
Confidence 9999999999999999999999999999999999999999999999999887 456666665566779999999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
...|+.+|+.+|..|+ ..++|||++||+++.++|..|+++ |+++..+||.|+|..|..++..|-.....||+||
T Consensus 297 l~~Ki~~L~sFI~shl----k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T 372 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL----KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT 372 (758)
T ss_pred hhhHHHHHHHHHHhcc----ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEee
Confidence 9999999999999874 569999999999999999999987 7899999999999999999999999999999999
Q ss_pred CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcch-hhHHHHhccCCCCcCCCCCCChHHHHHH
Q 003100 695 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKDLPLDKLQLPHLNPEIQLQM 773 (848)
Q Consensus 695 dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e-~~~l~~L~~~~l~~~~~~~~~~~~~~~~ 773 (848)
|+++||+|||.|+|||++|+|.++++||||+|||+|.+..|.|+++++|.| ..++..|++..+....+ .++++....+
T Consensus 373 Dv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i-~i~~~k~~~i 451 (758)
T KOG0343|consen 373 DVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEI-KIDPEKLTSI 451 (758)
T ss_pred hhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhh-ccCHHHhhhH
Confidence 999999999999999999999999999999999999999999999999988 78889887754332221 1233433333
Q ss_pred HHHHHHH---hHHHHHHHHHHHHHHHHHHHhhccCc--ccHHHH-HHHHHHHcCCCCCCCC
Q 003100 774 DNHMAKI---DNNVKEAAYHAWLGYYNSIREIGRDK--TTLVEL-ANKFAQSIGLQRPPPL 828 (848)
Q Consensus 774 ~~~l~~~---~~~~~e~~~~s~l~~y~~~~~~~~~~--~~~~~l-~~~la~s~GL~~~P~v 828 (848)
...++.+ +..+++.+..+|+.|.++++.. +++ +++..+ +.+||.|+||+..|.+
T Consensus 452 ~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~-rdK~~f~~~~l~~~afa~s~Gl~~~p~~ 511 (758)
T KOG0343|consen 452 RNKLEALLAKDPELKEYAQKAFISYLRSIYLM-RDKRVFDVEKLDIEAFADSLGLPGTPRI 511 (758)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhh-ccchhhcchhccHHHHHHhcCCCCCchh
Confidence 3333332 5678888999999999998633 333 334333 5789999999999984
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-69 Score=581.80 Aligned_cols=453 Identities=33% Similarity=0.511 Sum_probs=376.7
Q ss_pred ccCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCC
Q 003100 378 QKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (848)
Q Consensus 378 ~~~f~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~ 455 (848)
...|++++ |++++++++..+||..+||+|..+||.++.++||++.|+||||||+||++|+++.+++........ .
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~---~ 79 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG---Q 79 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc---c
Confidence 35677775 559999999999999999999999999999999999999999999999999999997765433221 3
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
+.+|||+||||||.||.+.+..++...+.+++.+++||..+..+...++..+++|+|||||||.++++.... .+++.++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsL 158 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSL 158 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hcccccc
Confidence 579999999999999999999999988899999999999999999999999999999999999999988532 2446799
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
+++|+||||+++++||...+..|+..+|+++++-|||||.+.++..+....++++..+. +.......+|..+...|..|
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~-V~~k~~~~tPS~L~~~Y~v~ 237 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVS-VKEKSKSATPSSLALEYLVC 237 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeee-ecccccccCchhhcceeeEe
Confidence 99999999999999999999999999999999999999999999999999999776554 23333344888899999999
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEe
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVT 693 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa 693 (848)
.+..|+..+.++|... ..+++|||++||..+++.+..|... ...++.+||.|++..|.++++.|+.....+|+|
T Consensus 238 ~a~eK~~~lv~~L~~~----~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~ 313 (567)
T KOG0345|consen 238 EADEKLSQLVHLLNNN----KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFC 313 (567)
T ss_pred cHHHHHHHHHHHHhcc----ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEe
Confidence 9999999999999874 5679999999999999999999876 678999999999999999999999999999999
Q ss_pred cCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCCCCChHHH
Q 003100 694 SDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLPHLNPEIQ 770 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~~~~~~~~ 770 (848)
|||++||||||+|++|||||+|.++..|+||+|||||+|+.|.+++|+.|.|..|++.++- ..+++...+.....+.
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~ 393 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVY 393 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchhHH
Confidence 9999999999999999999999999999999999999999999999999999988887653 4444444333222222
Q ss_pred HHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHh--hccCcccHHHH-HHHHHHHcCCCCCCCCCHHHHHhcCCC--CCC
Q 003100 771 LQMDNHMAKIDNNVKEAA---YHAWLGYYNSIRE--IGRDKTTLVEL-ANKFAQSIGLQRPPPLFRKTALKMGLK--DIP 842 (848)
Q Consensus 771 ~~~~~~l~~~~~~~~e~~---~~s~l~~y~~~~~--~~~~~~~~~~l-~~~la~s~GL~~~P~v~~~~~~k~gl~--~~p 842 (848)
..+.+ +..-+..+.+.. |.||+.+|..+.. +++ +.+| ...+|..|||...|.|++---.+.+-- ..|
T Consensus 394 ~~ir~-~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr----~kdLd~~~lA~~YgLl~lP~M~Elk~~~~~~~~~~~~ 468 (567)
T KOG0345|consen 394 QDIRS-IISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFR----LKDLDLGKLATLYGLLRLPKMPELKQYKIGEFFFPKP 468 (567)
T ss_pred HHHHH-HhcccHHHHhhhHHHHHHHHHHHhhcceeEEEe----ecCCcHHHHHHHHHHHhCCCcHHHhhhhccceeccCC
Confidence 22222 222244455554 5555555555431 333 2333 345688999999999987666665544 455
Q ss_pred Cc
Q 003100 843 GI 844 (848)
Q Consensus 843 gl 844 (848)
++
T Consensus 469 ~i 470 (567)
T KOG0345|consen 469 AI 470 (567)
T ss_pred Cc
Confidence 54
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-68 Score=562.48 Aligned_cols=371 Identities=37% Similarity=0.578 Sum_probs=336.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|.++++.+.+++++...|+..||++|+++||.++.|+|||+.|.||||||.+|+||++++|+.... .+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------LF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------Cc
Confidence 3467999999999999999999999999999999999999999999999999999999999999997542 26
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+||||||.||.+.+..+.... ++.+.++.||.+...+...+.+ .++|||||||+|++|+.+.++ +++..++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkg--f~le~lk 206 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKG--FSLEQLK 206 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccC--ccHHHhH
Confidence 89999999999999999999987654 8999999999998876666654 489999999999999998765 4678999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
++|+||||+++++.|.+.+.+|+..+|..+|+++||||+|..+..+....++++..+... ....+...++|.|+.++
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s---~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS---SKYQTVDHLKQTYLFVP 283 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc---chhcchHHhhhheEecc
Confidence 999999999999999999999999999999999999999999999998888766655432 33446667899999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...|..+|.++|++. .+..+||||+|+..+.++.-.|+.+|+.+..+||.|+|..|.-.++.|++|.+.||||||+
T Consensus 284 ~k~K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDV 359 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNEL----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDV 359 (476)
T ss_pred ccccchhHHHHHHhh----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecch
Confidence 999999999999976 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccCCCCcCCCCCCC
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLDKLQLPHLN 766 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~~l~~~~~~~~~ 766 (848)
++||+|+|.|++|||||+|.+..+||||+||+||+|++|.+|.|++.+|...+..|+..--.+.+....+
T Consensus 360 aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 360 ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 9999999999999999999999999999999999999999999999999988888887544444433333
No 5
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-67 Score=567.56 Aligned_cols=452 Identities=33% Similarity=0.508 Sum_probs=378.7
Q ss_pred cccCCCCcccccCcccCCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCC
Q 003100 368 EKREEEPILSQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446 (848)
Q Consensus 368 ~~~~~~~~~~~~~f~~l~l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~ 446 (848)
.+...+.++....|.++||++.+...|. .|++..||.+|+++||.+++|+|++|.++||||||++|++|+++.|.....
T Consensus 125 vk~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 125 VKQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred hccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 3455666778889999999999999998 589999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc
Q 003100 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS 526 (848)
Q Consensus 447 ~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~ 526 (848)
. .+...|+.+|||+||||||.|+++.++++++.+..|..+.+.||...+.+..++.. +++|+|+|||||++||.+..
T Consensus 205 k--i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-GiNILIgTPGRLvDHLknT~ 281 (708)
T KOG0348|consen 205 K--IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-GINILIGTPGRLVDHLKNTK 281 (708)
T ss_pred c--ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-CceEEEcCchHHHHHHhccc
Confidence 3 34667899999999999999999999999999888999999999999888888865 59999999999999999986
Q ss_pred CcccccCCccEEEEecccccccccchhhHHHHHHhcC-------------ccceeEEEeccCChHHHHHHHHHhccceEE
Q 003100 527 GLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-------------RRRQSLLFSATMPKEVRRISQLVLKREHTY 593 (848)
Q Consensus 527 ~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~-------------~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~ 593 (848)
. +.++++++||+||||+++++||..++..|++.+. ..+|.+++|||++..+..++...++.+ .+
T Consensus 282 ~--i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp-v~ 358 (708)
T KOG0348|consen 282 S--IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP-VY 358 (708)
T ss_pred h--heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-ee
Confidence 4 4567899999999999999999999999998762 247899999999999999999988754 44
Q ss_pred Eeec------C-----------------CCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHH
Q 003100 594 IDTV------G-----------------LGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVT 650 (848)
Q Consensus 594 i~~~------~-----------------~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a 650 (848)
|... . ......|..+.|.|.++++..++-.|..+|...+......++|||+++++.+
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 4310 0 1124467788899999999999999999999888777777999999999999
Q ss_pred HHHHHHHHHh----------------------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCe
Q 003100 651 SLLYLLLREM----------------------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 651 ~~l~~~L~~~----------------------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
++-|..|... +..++.+||+|+|.+|..+++.|......||+||||++||+|+|+|++
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9999998753 356899999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccCCCC--cCCCC------------CCChHHHH---
Q 003100 709 VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLPLD--KLQLP------------HLNPEIQL--- 771 (848)
Q Consensus 709 VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~~l~--~~~~~------------~~~~~~~~--- 771 (848)
||+||+|.++++|+||+|||+|+|..|.+++|+.|.|..|++.|+...+. ...+. ....+...
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at 598 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERAT 598 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHH
Confidence 99999999999999999999999999999999999999999888753211 11110 11111111
Q ss_pred ----HHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhhccCcccHHHH-HHHHHHHcCCCCCC
Q 003100 772 ----QMDNHMAKIDN---NVKEAAYHAWLGYYNSIREIGRDKTTLVEL-ANKFAQSIGLQRPP 826 (848)
Q Consensus 772 ----~~~~~l~~~~~---~~~e~~~~s~l~~y~~~~~~~~~~~~~~~l-~~~la~s~GL~~~P 826 (848)
.++..+.. ++ ++...+|.+|+.+|..+....+.-+++..+ ..++|+||+|.+.|
T Consensus 599 ~~q~~~e~~~~~-~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP 660 (708)
T KOG0348|consen 599 TLQLNLERLVVG-DEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAP 660 (708)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcc
Confidence 12211111 12 234457888888888775555566666666 68999999999999
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-67 Score=587.58 Aligned_cols=367 Identities=35% Similarity=0.517 Sum_probs=335.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
.|.+++|++.+.++|+..||..|||+|.++||.+++|+|++..|.|||||||+|+||++.++.... .......++++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~--~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ--GKLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--ccccCCCCCeEE
Confidence 799999999999999999999999999999999999999999999999999999999999998741 112234467999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||+||||||.|+...+.++.... .++..|++||.....+...+.. +++|+|+|||||+++|+.. ...|+++.|+|
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~-gvdiviaTPGRl~d~le~g---~~~l~~v~ylV 244 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLER-GVDVVIATPGRLIDLLEEG---SLNLSRVTYLV 244 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhc-CCcEEEeCChHHHHHHHcC---CccccceeEEE
Confidence 99999999999999999998765 5889999999999988888865 4999999999999999988 57899999999
Q ss_pred EecccccccccchhhHHHHHHhc-CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 540 LDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l-~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
+||||+|+++||.+++..|+..+ ++.+|++++|||+|..++.++..++. .+..+.+..........++.|....++..
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 99999999999999999999999 56679999999999999999999998 56666665554566778899999999999
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.|...|..+|..+. ....+|+||||+|++.|+.|...|...++++..|||+.+|.+|..+++.|++|+..|||||||++
T Consensus 324 ~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 324 AKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc
Confidence 99999999999876 55778999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccC
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDL 755 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~ 755 (848)
||||||+|++|||||+|.++++|+||+|||||+|+.|.+++|++..+......+.+.
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776666543
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-66 Score=561.15 Aligned_cols=361 Identities=33% Similarity=0.503 Sum_probs=327.4
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|.+++|+..+++++..+||..|||+|..+||..+.|+|++.||.||||||.||+||+|++|+-.... ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 3579999999999999999999999999999999999999999999999999999999999998754332 34569
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+|||||||+||.|++....++..+. .+.+++++||.+.+.+...+.+. +||||+|||||++||.+..+ +.+.++.+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~s--f~ldsiEV 330 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPS--FNLDSIEV 330 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCC--ccccceeE
Confidence 9999999999999999999998876 69999999999999888877765 79999999999999998864 56789999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
+|+||||+|++.+|.+++..|+..+|+++|++|||||++.++..++...+++|..+.-. ....+...+.|.|+.+.+
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd---~~~~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD---PNKDTAPKLTQEFIRIRP 407 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeC---CccccchhhhHHHheecc
Confidence 99999999999999999999999999999999999999999999999999988776432 233455667788776543
Q ss_pred ---hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 618 ---ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 618 ---~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
..+-.++..++...+ ...+|||+.|++.|.++.-+|--+|+.+..+||.++|.+|-..++.|+.+++.|||||
T Consensus 408 ~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT 483 (691)
T KOG0338|consen 408 KREGDREAMLASLITRTF----QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT 483 (691)
T ss_pred ccccccHHHHHHHHHHhc----ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEe
Confidence 356677777777764 4589999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 695 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 695 dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|+++|||||++|..||||.+|.+...|+||+|||+|+|+.|.+++|+...|...++.+-+
T Consensus 484 DvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 484 DVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred chhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987754
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-63 Score=573.84 Aligned_cols=362 Identities=40% Similarity=0.583 Sum_probs=327.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
..|.++++++.++++|.++||..|||+|.++||.++.|+|++++|+||||||+||+||+++++...... ... .+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~-----~~~-~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER-----KYV-SA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc-----CCC-ce
Confidence 669999999999999999999999999999999999999999999999999999999999997642110 001 19
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++||||||.|+++.+..+.....++.+.+++||.++..+...+.. +++|||+|||||++++... .+.+..++++
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~---~l~l~~v~~l 178 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRG---KLDLSGVETL 178 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcC---CcchhhcCEE
Confidence 99999999999999999999887657889999999999988877776 5999999999999999987 5788999999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
|+||||+|+++||.+++..|+..+|.++|+++||||+|..+..+++.++.++. .+.........+...+.|.++.+...
T Consensus 179 VlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 179 VLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred EeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999998554 44443233334677899999999887
Q ss_pred h-HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 619 L-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 619 ~-k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
. |+..|..++... ...++||||+|+..|+.++..|...|+.+..|||+|+|.+|.++++.|++|...||||||++
T Consensus 258 ~~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva 333 (513)
T COG0513 258 EEKLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh
Confidence 6 999999988864 34479999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhccC
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKDL 755 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~~~ 755 (848)
+||||||+|++|||||+|.++++|+||+|||||+|..|.+++|+++. |..++..++..
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 78888877664
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-61 Score=503.61 Aligned_cols=366 Identities=35% Similarity=0.524 Sum_probs=327.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+.+.|..||+++++.+.|+++|+.+|||+|..|||.|++|+|+|.+|.||||||++|.+|+++++.+... |.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------GI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------cc
Confidence 3467999999999999999999999999999999999999999999999999999999999999977643 45
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc-CcccccCCc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS-GLSVRLMGL 535 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~-~~~~~l~~l 535 (848)
.+||++||||||.|+.+.|..+.+.. ++++.+++||.+.-.+...+ ...+||||+|||+|.+++..+. .....+.++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 89999999999999999998886654 89999999999987555555 4458999999999999998772 223457889
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
+++|+||||++++.+|.+++..+...+|+.+|+++||||+++.+..+.......+..+.. .......+...+.|.|+.+
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~-e~~~~vstvetL~q~yI~~ 233 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFEL-EVIDGVSTVETLYQGYILV 233 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEE-eccCCCCchhhhhhheeec
Confidence 999999999999999999999999999999999999999999888766555544322222 2234556788899999999
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
+...+-.+++++|...-.. +.+.++||++++.+|+.++..|+.+.+.+..+|+.|+|.+|...+.+|+++...||||||
T Consensus 234 ~~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 234 SIDVKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred chhhhHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 9999999999999876433 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|++||+|||.|++|||||+|.++.+|+||+|||+|+|+.|.++.|+++.|-..+..+++
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888875
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-60 Score=515.37 Aligned_cols=365 Identities=32% Similarity=0.539 Sum_probs=325.3
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCC-CCCCCCe
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPPI 456 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~-~~~~~~~ 456 (848)
...|++.+++.++++.+.+.||..|+|+|.++||..++++|+|..|.||||||++|++|++-.+.....-.. ....-|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 467999999999999999999999999999999999999999999999999999999999988876553322 2334578
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
+++|++|||+||+||.++-.++++.. ++.+..++||.++..+--.+ +.+|+|+|+|||+|++.|.+. .+-++.+.
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Lenr---~lvl~qct 398 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLENR---YLVLNQCT 398 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHHH---HHHhccCc
Confidence 99999999999999999999998765 79999999999987664455 346999999999999999988 56789999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCc-------------------------cceeEEEeccCChHHHHHHHHHhccce
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPR-------------------------RRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~-------------------------~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
+||+||||+|+|+||.+++..|+..+|. -+|+++||||+|+.+..+++.++..+.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999999873 179999999999999999999998765
Q ss_pred EEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCc
Q 003100 592 TYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRK 671 (848)
Q Consensus 592 ~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~l 671 (848)
.+ . ++. .......++|.++.+..+.++..|..+|... ...++|||+|+++.|+.+++.|.+.+++++.|||+.
T Consensus 479 ~v-t-ig~-~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 479 VV-T-IGS-AGKPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred EE-E-ecc-CCCCccchheEEEEecchHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 43 2 221 1224456888899999999999999988875 456999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHH
Q 003100 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDD 751 (848)
Q Consensus 672 s~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~ 751 (848)
+|.+|+.+++.|++|...||||||+++||||||+|.+|||||++.+.++|+||||||||+|+.|.++.|+++.+..++.+
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766655
Q ss_pred hcc
Q 003100 752 LKD 754 (848)
Q Consensus 752 L~~ 754 (848)
|.+
T Consensus 632 Lkq 634 (673)
T KOG0333|consen 632 LKQ 634 (673)
T ss_pred HHH
Confidence 544
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-60 Score=499.19 Aligned_cols=399 Identities=29% Similarity=0.429 Sum_probs=340.5
Q ss_pred CCCcccHHHHHHHHHHhhhcccCCCCCcccccCCCCcccccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC
Q 003100 339 EDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417 (848)
Q Consensus 339 ~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~ 417 (848)
+.....+++++.++++--+....+-.+. +... -..+..+|++ +...+++++.+++.||.+|||+|.++||.+|+|.
T Consensus 182 e~s~ls~~q~~~~r~en~~it~dd~K~g--ekrp-IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~ 258 (629)
T KOG0336|consen 182 ETSNLSKEQLQEWRKENFNITCDDLKEG--EKRP-IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGI 258 (629)
T ss_pred hhccCCHHHHHHHHHcCCcEEecccccC--Cccc-CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCc
Confidence 3335667888888888666554432111 1111 1223467876 4788999999999999999999999999999999
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
|+|.+|.||+|||++|++|.+-|+....... ....++.+|+++|||+||.|+.-++.++. +.++...+++||.+..
T Consensus 259 DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~--~qr~~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~ 334 (629)
T KOG0336|consen 259 DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR--EQRNGPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRN 334 (629)
T ss_pred ceEEEEecCCCcCHHHhccceeeeeccchhh--hccCCCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCch
Confidence 9999999999999999999887776543222 23556789999999999999999888874 3488899999999988
Q ss_pred HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 498 ~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
.+...++. +.+|+|+||++|.++...+ .++|.++.||||||||+|+||||.+++.+|+--+++++|+++.|||+|.
T Consensus 335 eqie~lkr-gveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 335 EQIEDLKR-GVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPE 410 (629)
T ss_pred hHHHHHhc-CceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCch
Confidence 87777765 5899999999999999877 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHH
Q 003100 578 EVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 657 (848)
Q Consensus 578 ~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L 657 (848)
.+..++..+++.+..+. ++.-.......++|.+++.....++..+..++... .++.++||||..+..|+.|...|
T Consensus 411 ~VrrLa~sY~Kep~~v~--vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 411 GVRRLAQSYLKEPMIVY--VGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred HHHHHHHHhhhCceEEE--ecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc---CCCceEEEEEechhhhhhccchh
Confidence 99999999998654432 33334445567888888878888888777777654 46789999999999999999999
Q ss_pred HHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceE
Q 003100 658 REMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG 737 (848)
Q Consensus 658 ~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~ 737 (848)
.-.|+.+..+||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||+|||+|.+++.|+||+|||||+|+.|.+
T Consensus 486 ~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 486 CLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred hhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcchhhHHHHhc
Q 003100 738 VLLLAPWEEYFLDDLK 753 (848)
Q Consensus 738 i~l~~~~e~~~l~~L~ 753 (848)
+.|++..|......|-
T Consensus 566 is~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 566 ISFLTRNDWSMAEELI 581 (629)
T ss_pred EEEEehhhHHHHHHHH
Confidence 9999998876665553
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.4e-58 Score=543.72 Aligned_cols=418 Identities=32% Similarity=0.499 Sum_probs=343.1
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|.+++|++.++++|.++||..|||+|.++|+.+++|+|+|++||||||||++|++|+++.+.... .+++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~ 76 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQ 76 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCe
Confidence 34699999999999999999999999999999999999999999999999999999999998875421 2357
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+|||+||++||.|+++.+..+.+...++.+..++||.+...+...+. .+++|||+||++|++++... .+.++++++
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~-~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~ 152 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRG---TLDLSKLSG 152 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc-CCCCEEEECHHHHHHHHHcC---CcchhhceE
Confidence 99999999999999999999988777899999999998876666654 45899999999999999876 466889999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
|||||||+|++++|...+..|+..++..+|+++||||+|..+..+...++..+..+ .... .......+.+.++.+..
T Consensus 153 lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i-~i~~--~~~~~~~i~q~~~~v~~ 229 (629)
T PRK11634 153 LVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV-RIQS--SVTTRPDISQSYWTVWG 229 (629)
T ss_pred EEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEE-EccC--ccccCCceEEEEEEech
Confidence 99999999999999999999999999999999999999999999998888754433 2221 12233456677777777
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..+...|..+|... ...++||||+|+..+..++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 230 ~~k~~~L~~~L~~~----~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ 305 (629)
T PRK11634 230 MRKNEALVRFLEAE----DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 (629)
T ss_pred hhHHHHHHHHHHhc----CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 78888888777643 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCCCCChHHHHHHH
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLPHLNPEIQLQMD 774 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~~~~~~~~~~~~ 774 (848)
++|||+|+|++|||||+|.+.++|+||+|||||.|+.|.|++|+.+.|..+++.+++ ..+....++...........
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~ 385 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLE 385 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888765 34445555544333333444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH-Hhhc----cCcccHHHHHHHHHH
Q 003100 775 NHMAKIDNNVKEAAYHAWLGYYNSI-REIG----RDKTTLVELANKFAQ 818 (848)
Q Consensus 775 ~~l~~~~~~~~e~~~~s~l~~y~~~-~~~~----~~~~~~~~l~~~la~ 818 (848)
.....+...+.. ..+.+|..+ ..+. .......+++.+|+.
T Consensus 386 ~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~ 430 (629)
T PRK11634 386 KFAAKVQQQLES----SDLDQYRALLAKIQPTAEGEELDLETLAAALLK 430 (629)
T ss_pred HHHHHHHHHhhh----hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHH
Confidence 444443333322 222333222 2221 123456777766655
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-58 Score=541.85 Aligned_cols=368 Identities=32% Similarity=0.447 Sum_probs=321.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+..+|.++++++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|+||++.++....... ...++
T Consensus 128 p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~---~~~gp 204 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLR---YGDGP 204 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccccc---CCCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999887542211 12356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
.+|||+|||+||.|+.+.+.++.... ++.+.+++||.....+...+. .+++|+|+||++|++++... ...+.+++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~-~~~~IlVaTPgrL~d~l~~~---~~~l~~v~ 279 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALR-RGVEILIACPGRLIDFLESN---VTNLRRVT 279 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHHHHHHHcC---CCChhhCc
Confidence 89999999999999999999987654 788899999988776666665 45899999999999999876 45678999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+|||||||+|++++|..++..|+..+++.+|+++||||+|..+..++..++...+..+.... ........+.+.+..+.
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~-~~l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGS-LDLTACHNIKQEVFVVE 358 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECC-CccccCCCeeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999888865444443322 12233445677777777
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...+...|..++..... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+..|||||++
T Consensus 359 ~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch
Confidence 77888888888876542 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccC
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDL 755 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~ 755 (848)
++||||+|+|++||+||+|.+.++|+||+|||||.|..|.|++|+++.+......|.++
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887776666543
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-59 Score=475.94 Aligned_cols=362 Identities=31% Similarity=0.503 Sum_probs=325.2
Q ss_pred CCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCC
Q 003100 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (848)
Q Consensus 373 ~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~ 452 (848)
..+....+|+++|+++++++++...||++|+.+|+.||+.|+.|+|||++|..|+|||.+|.+.+++.+--.
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------- 92 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------- 92 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------
Confidence 445566889999999999999999999999999999999999999999999999999999999888765322
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 453 ~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
....++|||+||||||.|+...+..+..+. ++.+..++||.+...+.+.+. .+.+++.+|||++++++... .++.
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr~---~L~t 167 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKRR---SLRT 167 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHhc---cccc
Confidence 223589999999999999999999887654 899999999999988888876 67899999999999999987 4677
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC 612 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~ 612 (848)
..++++|+||||.|++.||..++..|..++|+..|++++|||+|.++.+....++..+..+..- ....+...++|+|
T Consensus 168 r~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk---rdeltlEgIKqf~ 244 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK---RDELTLEGIKQFF 244 (400)
T ss_pred cceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe---cCCCchhhhhhhe
Confidence 8899999999999999999999999999999999999999999999999999999877666432 1223445588998
Q ss_pred ccCChhh-HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEE
Q 003100 613 LVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 691 (848)
Q Consensus 613 ~~~~~~~-k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VL 691 (848)
+.+..+. |++.|+.+.... .-.+++|||+|+..+++|.+.+++..+.|.++||+|++++|..++..|++|+.+||
T Consensus 245 v~ve~EewKfdtLcdLYd~L----tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 245 VAVEKEEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred eeechhhhhHhHHHHHhhhh----ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 8877655 999998876654 23489999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 692 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|+||+-+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.++-|+...|...++.+++
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887777765
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.8e-58 Score=523.65 Aligned_cols=365 Identities=32% Similarity=0.493 Sum_probs=315.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|++++|++.++++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++.+........ ....++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~ 84 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQP 84 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCc
Confidence 3467999999999999999999999999999999999999999999999999999999999999986532211 112356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+|||+||.|+++.+..+.... ++.+..++||.....+...+. .+++|+|+||++|++++... .+.+.+++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~---~~~l~~v~ 159 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLE-SGVDILIGTTGRLIDYAKQN---HINLGAIQ 159 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEECHHHHHHHHHcC---Cccccccc
Confidence 89999999999999999999887754 789999999988776655554 45899999999999999765 46688999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCc--cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV 614 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~--~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~ 614 (848)
+|||||||++++++|...+..++..++. .+|+++||||++..+..+....+..+. .+..... ......+.+.+..
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-~i~v~~~--~~~~~~i~~~~~~ 236 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-YVEVEPE--QKTGHRIKEELFY 236 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-EEEEcCC--CcCCCceeEEEEe
Confidence 9999999999999999999999999874 577899999999999888877776543 3332211 1223445565666
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
.....+...+..++... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|++.|||||
T Consensus 237 ~~~~~k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT 312 (423)
T PRK04837 237 PSNEEKMRLLQTLIEEE----WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT 312 (423)
T ss_pred CCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe
Confidence 66677877777777643 45699999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 695 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 695 dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++++||||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+++
T Consensus 313 dv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 313 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred chhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877777754
No 16
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-59 Score=507.22 Aligned_cols=368 Identities=30% Similarity=0.432 Sum_probs=313.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCC-----CC
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS-----TT 450 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~-----~~ 450 (848)
....|..++++..++++|..+||..||++|..+||++..| .|++..|.|||||||||-||+++.+....... ..
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3467999999999999999999999999999999999998 79999999999999999999999665432111 11
Q ss_pred CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccc
Q 003100 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV 530 (848)
Q Consensus 451 ~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~ 530 (848)
.....+.+||++||||||.|+.+-+..+... +++.+..++||.....+++.+.. .++|||+|||||+.++.....+.-
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhh
Confidence 1222335999999999999999999998874 69999999999999887777766 589999999999999998866667
Q ss_pred ccCCccEEEEecccccccccchhhHHHHHHhcC-----ccceeEEEeccCChH---------------------HHHHHH
Q 003100 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-----RRRQSLLFSATMPKE---------------------VRRISQ 584 (848)
Q Consensus 531 ~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~-----~~~Q~ll~SATl~~~---------------------v~~l~~ 584 (848)
++.+++++||||||+|++.|+...+..|+..+. ..+|+++||||++-. ++.+.+
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 788999999999999999999999999988775 468999999998521 222222
Q ss_pred H-HhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccc
Q 003100 585 L-VLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 663 (848)
Q Consensus 585 ~-~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~ 663 (848)
. .++..+.+|+... ...+...+....+.|+...+-.+|+.+|.. .++++|||||++..+.+|+-+|+.+++.
T Consensus 417 ~ig~~~kpkiiD~t~--q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-----yPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTP--QSATASTLTESLIECPPLEKDLYLYYFLTR-----YPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HhCccCCCeeEecCc--chhHHHHHHHHhhcCCccccceeEEEEEee-----cCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 2 2333456776542 233445566677778887777777777665 4789999999999999999999999999
Q ss_pred eeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 664 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 664 v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
.+.+|+.|.|.+|-+.+++|++....|||||||++||+|||+|.|||||.+|.+.+-|+||.|||+|++..|.+++|+.|
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P 569 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP 569 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhc
Q 003100 744 WEEYFLDDLK 753 (848)
Q Consensus 744 ~e~~~l~~L~ 753 (848)
.|..++..|-
T Consensus 570 ~e~~~~~KL~ 579 (731)
T KOG0347|consen 570 QEVGPLKKLC 579 (731)
T ss_pred HHhHHHHHHH
Confidence 9987766553
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-57 Score=523.16 Aligned_cols=356 Identities=34% Similarity=0.508 Sum_probs=317.9
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|.++++++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++++.... ..+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceE
Confidence 5799999999999999999999999999999999999999999999999999999999999885332 13479
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++||++||.|+++.+..+.....++.+..++||.+...+...+. .+++|+|+||++|.+++.+. ...+.++++|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~l 151 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-HGAHIIVGTPGRILDHLRKG---TLDLDALNTL 151 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-CCCCEEEEChHHHHHHHHcC---CccHHHCCEE
Confidence 9999999999999999999887766889999999998877666665 56899999999999999875 3567899999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
||||||+|++++|...+..++..++..+|+++||||+++.+..++..++..+..+. .... .....+.+.++.+...
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~-~~~~---~~~~~i~~~~~~~~~~ 227 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVK-VEST---HDLPAIEQRFYEVSPD 227 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEE-ECcC---CCCCCeeEEEEEeCcH
Confidence 99999999999999999999999999999999999999999999988887554432 2211 1233477777788888
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.+...+..++... ...++||||+|+..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||++++
T Consensus 228 ~k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~ 303 (460)
T PRK11776 228 ERLPALQRLLLHH----QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAA 303 (460)
T ss_pred HHHHHHHHHHHhc----CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccc
Confidence 8888888887653 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+|||+|+|++||+||+|.+..+|+||+|||||.|..|.|++|+.+.|...++.+++
T Consensus 304 rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 304 RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777655
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.4e-57 Score=518.68 Aligned_cols=361 Identities=32% Similarity=0.515 Sum_probs=313.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
+|++++|++.++++|.++||..||++|.++|+.+++|+|+|++||||||||++|++|+++.+....... ....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEE
Confidence 589999999999999999999999999999999999999999999999999999999999987543221 112346899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||+||++||.|+.+.+..+.... ++.+..++|+.....+...+. ..++|+|+||++|++++... ...+.++++||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lV 154 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLR-GGVDVLVATPGRLLDLEHQN---AVKLDQVEILV 154 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHc-CCCcEEEEChHHHHHHHHcC---CcccccceEEE
Confidence 99999999999999999987654 688889999988776655554 45899999999999988765 35688999999
Q ss_pred EecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhh
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 619 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~ 619 (848)
|||||++++++|...+..++..++..+|+++||||++..+..+...++..+..+. ... .......+.+.+..++...
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~-~~~--~~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIE-VAR--RNTASEQVTQHVHFVDKKR 231 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEE-Eec--ccccccceeEEEEEcCHHH
Confidence 9999999999999999999999999999999999999999988888876554332 211 1122344666666777777
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccc
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSAR 699 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~r 699 (848)
+...+..++.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 232 k~~~l~~l~~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~r 307 (456)
T PRK10590 232 KRELLSQMIGK----GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 (456)
T ss_pred HHHHHHHHHHc----CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhc
Confidence 77666666543 34568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 700 GMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 700 GlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|||+|+|++||||++|.+..+|+||+|||||.|..|.|++|+++.|..+++.++.
T Consensus 308 GiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred CCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888877765
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-56 Score=525.97 Aligned_cols=364 Identities=30% Similarity=0.479 Sum_probs=314.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
..|++++|++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|++|+++++....... ......+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 4699999999999999999999999999999999999999999999999999999999999987543111 011124689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
|||+||++||.|+++.+.++.... ++.+..++|+.....+...+ ..+++|||+||++|++++.+.. .+.+..+++|
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~--~~~l~~v~~l 163 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHK--VVSLHACEIC 163 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhcc--ccchhheeee
Confidence 999999999999999999987654 78999999999877555544 4568999999999999997653 2457789999
Q ss_pred EEecccccccccchhhHHHHHHhcCc--cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~--~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
||||||+|++++|...+..|+..++. .+|+++||||++..+..+...++..+..++... .......+.+.++...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~---~~~~~~~i~q~~~~~~ 240 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET---ETITAARVRQRIYFPA 240 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc---ccccccceeEEEEecC
Confidence 99999999999999999999999986 789999999999999988888876554443211 1123345667777777
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...+...+..++.. ....++||||+|+..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 241 ~~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 241 DEEKQTLLLGLLSR----SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred HHHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 77777777776654 35679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+++|||+|+|++|||||+|.+..+|+||+|||||.|..|.|++|+++.+...+..+++
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877777765
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-58 Score=474.34 Aligned_cols=355 Identities=30% Similarity=0.469 Sum_probs=326.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
..|+++.|.++++..+.++||++|+|+|.++||.++.|+|+++.|..|+|||.||++|+++.+-... ..+++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeE
Confidence 5699999999999999999999999999999999999999999999999999999999998874332 24689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
+|++||||||.|+.+.+.++.+.. ++.+...+||++...+.-++. .+.+++|+||||+++++... ...++++.++
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~-~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~l 231 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLN-QTVHLVVGTPGRILDLAKKG---VADLSDCVIL 231 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeec-CceEEEEcCChhHHHHHhcc---cccchhceEE
Confidence 999999999999999999988765 799999999999988777764 46899999999999999877 4668899999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
|+||||.+++..|...++.++..+|+.+|++++|||+|-.+..+...++++|+.+ +. -..-+...+.|+|.++.+.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~I-NL---M~eLtl~GvtQyYafV~e~ 307 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEI-NL---MEELTLKGVTQYYAFVEER 307 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCccee-eh---hhhhhhcchhhheeeechh
Confidence 9999999999999999999999999999999999999999999999999877654 22 2334667899999999999
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.|...|..++...- -.+.||||||.+.++.++..+.++|+.+..+|+.|.|..|.+++..|++|.++.|||||.+.
T Consensus 308 qKvhCLntLfskLq----INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T 383 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQ----INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT 383 (459)
T ss_pred hhhhhHHHHHHHhc----ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh
Confidence 99999988887652 34789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
||||+++|++|||||+|.+.++|+||+||+||.|..|.++.+++-.|...+..+++
T Consensus 384 RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 384 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888865
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-57 Score=498.97 Aligned_cols=368 Identities=34% Similarity=0.499 Sum_probs=324.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCC--Ce
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PI 456 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~--~~ 456 (848)
..|++..+.+.+...++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.++++........... .+
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999987654443333 47
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
.+||++||||||.|+++++.++... ..+.+...|||.+...+...+.+ +|+|+|||||+|.+++... .+.|.+++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~~-gcdIlvaTpGrL~d~~e~g---~i~l~~~k 228 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIKR-GCDILVATPGRLKDLIERG---KISLDNCK 228 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhcc-CccEEEecCchhhhhhhcc---eeehhhCc
Confidence 9999999999999999999998654 47889999999888877666654 5999999999999999987 57889999
Q ss_pred EEEEeccccccc-ccchhhHHHHHHhcCc----cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecc
Q 003100 537 MLVLDEADHLLD-LGFRKDVENIVDCLPR----RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQS 611 (848)
Q Consensus 537 ~lVIDEAH~ll~-~gf~~~l~~Il~~l~~----~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~ 611 (848)
+|||||||+|+| ++|.+++..|+..... .+|+++||||+|..++.++..++...+.++.+.... ....++.|.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg--~~~~ni~q~ 306 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG--STSENITQK 306 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec--cccccceeE
Confidence 999999999999 9999999999998754 789999999999999998888887655555443322 356678899
Q ss_pred cccCChhhHHHHHHHHHHHHhhCCCCc-----eEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC
Q 003100 612 CLVAPHELHFQILHHLLKEHILGTPDY-----KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 612 ~~~~~~~~k~~~L~~lL~~~~~~~~~~-----kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G 686 (848)
+..+....+...|.++|.......... +++|||.|++.|..+...|...++++..+||..+|.+|.+++..|+.|
T Consensus 307 i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g 386 (482)
T KOG0335|consen 307 ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG 386 (482)
T ss_pred eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC
Confidence 999999999999999988654221233 899999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
...|||||++++||||||+|++||+||+|.+..+|+||||||||.|..|.++.|+........+.|-
T Consensus 387 ~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 387 KAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred CcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999855554444443
No 22
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-56 Score=475.98 Aligned_cols=365 Identities=30% Similarity=0.460 Sum_probs=321.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|++++|++++++++.+.|+.+||-+|..+||.+++|+|+++.|.||||||+||+||+++.++...... ....++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 6799999999999999999999999999999999999999999999999999999999999999876554 23456789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||+||||||.|++..+.++..++. .+++.-+....+-.... .+....++|||+||++|+.++..... ..+..+++
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~ 173 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSF 173 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccc--hhhhheee
Confidence 9999999999999999998877654 45555555444433333 55556689999999999999987742 55788999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
+|+||||.++..||.+++..|...+|+..|.++||||+..++..+.+.++++|... . ........+..+.|+.+.|..
T Consensus 174 LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviL-k-l~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 174 LVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVIL-K-LTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred EEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEE-E-eccccCCCcccceEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999876653 3 223444467889999999999
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV- 696 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv- 696 (848)
.+|+..++.+++-.+. .+++|||+||.+.|.++.-.|.+.|++.++++|.|+..-|..++++|..|-++|+||||.
T Consensus 252 ~DKflllyallKL~LI---~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s 328 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI---RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDS 328 (569)
T ss_pred chhHHHHHHHHHHHHh---cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCc
Confidence 9999999999886653 579999999999999999999999999999999999999999999999999999999991
Q ss_pred ----------------------------------ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 697 ----------------------------------SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 697 ----------------------------------l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
++|||||..|.+|||||+|.++..||||+|||||++++|.++.|+.
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred cchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEec
Confidence 2599999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhc
Q 003100 743 PWEEYFLDDLK 753 (848)
Q Consensus 743 ~~e~~~l~~L~ 753 (848)
|.+..-...|+
T Consensus 409 P~e~~g~~~le 419 (569)
T KOG0346|consen 409 PKEEFGKESLE 419 (569)
T ss_pred chHHhhhhHHH
Confidence 98876444443
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5e-58 Score=480.35 Aligned_cols=370 Identities=31% Similarity=0.453 Sum_probs=325.4
Q ss_pred cccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCC
Q 003100 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (848)
Q Consensus 375 ~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~ 454 (848)
.++..+|.++.++..+++.|++.|+.+|||+|.+.||.+++|+|+|..|-||||||++|.||++...+......+-...-
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 34457899999999999999999999999999999999999999999999999999999999998888776555555567
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhc-----CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcc
Q 003100 455 PIYVLILCPTRELASQIAAEAIALLKN-----HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529 (848)
Q Consensus 455 ~~~vLIL~PTreLa~Qi~~~l~~l~~~-----~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~ 529 (848)
|+..|||||+|+||.|+++.+..++.. .|.++..+++||.++..+..... .+.+|+|+|||||.++|... .
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~-~GvHivVATPGRL~DmL~KK---~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR-RGVHIVVATPGRLMDMLAKK---I 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh-cCeeEEEcCcchHHHHHHHh---h
Confidence 889999999999999999998887643 46688999999999987776665 46999999999999999887 5
Q ss_pred cccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceee
Q 003100 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIK 609 (848)
Q Consensus 530 ~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~ 609 (848)
.+|.-++|+++||||+|+|+||.+++..|+..+..++|+++||||+|..++.|++..+-+|..+ ++-.. .....++-
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtv-NVGRA--GAAsldVi 398 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTV-NVGRA--GAASLDVI 398 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEE-ecccc--cccchhHH
Confidence 6778899999999999999999999999999999999999999999999999999988765443 32221 22344566
Q ss_pred cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCce
Q 003100 610 QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 689 (848)
Q Consensus 610 q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~ 689 (848)
|.+.++..+.|+-+|...|++ ...++||||..+.+++.++++|--.|+.+..+||+..|++|...++.|+.|+.+
T Consensus 399 QevEyVkqEaKiVylLeCLQK-----T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 399 QEVEYVKQEAKIVYLLECLQK-----TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred HHHHHHHhhhhhhhHHHHhcc-----CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc
Confidence 777777778887777776654 456999999999999999999998999999999999999999999999999999
Q ss_pred EEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCc-chhhHHHHhccCC
Q 003100 690 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAP-WEEYFLDDLKDLP 756 (848)
Q Consensus 690 VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~-~e~~~l~~L~~~~ 756 (848)
||||||+++.|+|||++.+|||||+|..++.|+||+|||||.|+.|.+.+|+.. .+...+-+|+.+.
T Consensus 474 VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 474 VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 4556666665543
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1e-55 Score=516.23 Aligned_cols=365 Identities=28% Similarity=0.432 Sum_probs=310.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+..+|.++++++.+++.|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++.++........ ....++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~-~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP-SEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc-cccCCc
Confidence 4467999999999999999999999999999999999999999999999999999999999998875322111 112456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+|||+||.|+.+.+..+.... ++.+..++||.....+...+. .+++|+|+||++|++++... ...+.+++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~-~~~~IiV~TPgrL~~~l~~~---~~~l~~v~ 272 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQ-QGVELIVGTPGRLIDLLSKH---DIELDNVS 272 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhc-CCCCEEEECHHHHHHHHHcC---Cccchhee
Confidence 89999999999999999998887654 678888899988776665554 45899999999999999876 46688999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+|||||||+|+++||...+..|+..++ .+|+++||||++..+..++..++..+ ..+..... ......+.+.+..+.
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~-~~i~~~~~--~~~~~~v~q~~~~~~ 348 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDI-ILISIGNP--NRPNKAVKQLAIWVE 348 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCC-EEEEeCCC--CCCCcceeEEEEecc
Confidence 999999999999999999999998885 68999999999999999988877643 33332211 122344566666777
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH-hccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~-~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
...+...+..++.... ....++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+..|||||+
T Consensus 349 ~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd 426 (518)
T PLN00206 349 TKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG 426 (518)
T ss_pred chhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 7777777777776532 1235899999999999999999975 589999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
+++||||+|+|++||+||+|.+..+|+||+|||||.|..|.+++|+++.+...+..|.
T Consensus 427 vl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 427 VLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred HhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876555543
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1e-54 Score=499.32 Aligned_cols=359 Identities=33% Similarity=0.512 Sum_probs=308.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
.|+++++++.++++|.++||..|+++|.++|+.+++|+|++++||||+|||++|++|+++++...... ...++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 59999999999999999999999999999999999999999999999999999999999998764221 12245899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||+||++||.|+++.+..+.... ++.+..++||.........+ ...++|+|+||++|++++... .+.+.++++||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lV 152 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKEE---NFDCRAVETLI 152 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHcC---CcCcccCCEEE
Confidence 99999999999999999988754 78999999998877655444 445899999999999999865 35678899999
Q ss_pred EecccccccccchhhHHHHHHhcCccceeEEEeccCCh-HHHHHHHHHhccceEEEeecCCCcccccceeecccccCC-h
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK-EVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP-H 617 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~-~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~-~ 617 (848)
|||||+|++++|...+..+...++..+|+++||||++. .+..+...++..+. .+..... ......+.+.+..+. .
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~i~~~~~~~~~~ 229 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV-EVEAEPS--RRERKKIHQWYYRADDL 229 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE-EEEecCC--cccccCceEEEEEeCCH
Confidence 99999999999999999999999999999999999985 47777777765443 3332221 122334555555444 3
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..+...+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|++.|||||+++
T Consensus 230 ~~k~~~l~~l~~~----~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 230 EHKTALLCHLLKQ----PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 5666776666653 245799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|||+|+|++|||||+|.+...|+||+|||||.|..|.+++|+...|..++..++.
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888877764
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-54 Score=502.71 Aligned_cols=366 Identities=33% Similarity=0.534 Sum_probs=315.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
...|.++++++.++++|.++||..||++|.++|+.+++|+|+|++++||||||++|++|+++.+....... ......++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-ERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-ccccCCce
Confidence 35699999999999999999999999999999999999999999999999999999999999987653211 11122458
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+|||+||++||.|+++.+..+.+.. ++.+..++||.....+...+....++|+|+||++|++++... ...+.++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 9999999999999999999987654 788999999988877777777777899999999999988765 456789999
Q ss_pred EEEecccccccccchhhHHHHHHhcCc--cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~--~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
|||||||++++++|...+..|+..++. .+|++++|||++..+..++..++..+.. +..... ......+.+.+..+
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~-v~~~~~--~~~~~~~~~~~~~~ 317 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAI-VEIEPE--NVASDTVEQHVYAV 317 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEE-EEeccC--cCCCCcccEEEEEe
Confidence 999999999999999999999998864 5799999999999998888887765433 322111 11223455666666
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
....+...+..++.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|++.|||||+
T Consensus 318 ~~~~k~~~l~~ll~~----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 318 AGSDKYKLLYNLVTQ----NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred cchhHHHHHHHHHHh----cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 667777777776654 2456999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccC
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDL 755 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~ 755 (848)
++++|||+|+|++||+|++|.+..+|+||+|||||.|..|.+++|+.+.|.+++..++.+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~ 453 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEEL 453 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888888664
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-55 Score=472.04 Aligned_cols=366 Identities=32% Similarity=0.478 Sum_probs=328.2
Q ss_pred CCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCC
Q 003100 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (848)
Q Consensus 373 ~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~ 452 (848)
.+..+.++|.++++++.|+.++.+..|.+|||+|.+++|..+.|+||+-+|.||||||.||+.|++-|++....-. .
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~---~ 293 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK---P 293 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc---C
Confidence 4455668899999999999999999999999999999999999999999999999999999999999998764322 2
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 453 ~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
..++.+||+||||+||.|++.+++++++.. ++++.+++||.+.-.+...|+ .++.|||||||||++++.-. ..++
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~VkmK---atn~ 368 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKMK---ATNL 368 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHhh---cccc
Confidence 346789999999999999999999998876 899999999999888877777 67999999999999999876 5778
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC 612 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~ 612 (848)
.++++|||||||+|+++||..++..|...+++++|+|+||||++..++.+++.+|..+..++.. ........+.|.+
T Consensus 369 ~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg---~vgean~dITQ~V 445 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG---EVGEANEDITQTV 445 (731)
T ss_pred eeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe---ehhccccchhhee
Confidence 9999999999999999999999999999999999999999999999999999999887776643 2223455677777
Q ss_pred ccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEE
Q 003100 613 LVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLIL 691 (848)
Q Consensus 613 ~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VL 691 (848)
.+++. ..|+..|..-|... ...+++|||+.-...++.+...|+-.+++|..+||++.|.+|.+++..|+.+...||
T Consensus 446 ~V~~s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vl 522 (731)
T KOG0339|consen 446 SVCPSEEKKLNWLLRHLVEF---SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVL 522 (731)
T ss_pred eeccCcHHHHHHHHHHhhhh---ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceE
Confidence 77665 56777776666554 346799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 692 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
|+||+++||+|||.+..||+||+-.+++.|+||+||+||+|..|.+++++++.|..|.-.|
T Consensus 523 vatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 523 VATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred EEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999998765444
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-55 Score=514.93 Aligned_cols=376 Identities=33% Similarity=0.507 Sum_probs=337.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+.++|.++|++..++..++++||.++++||.+|||+|+.|+|||.+|.||||||++|+||++.|+...... ....||
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~---~~gdGP 439 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL---EEGDGP 439 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh---hhCCCc
Confidence 34789999999999999999999999999999999999999999999999999999999999877655432 234488
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
.+||++|||+||.||++++..|++. .++.+.+++||.....+...++++ +.|+|||||++++++-.+.+...+|.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccc
Confidence 9999999999999999999999987 699999999999999888888776 99999999999999988877777788888
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
++|+||||+|++++|.+++..|++.+++.+|+++||||+|..+..++...++.|..++ +. ........+.|.+.++.
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveii-v~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEII-VG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEE-Ec--cceeEeccceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999666543 22 33345567788888888
Q ss_pred -hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 617 -HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 617 -~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
...|+..|..+|.... .+.++||||..+..|..+...|.+.++.+..+||+.++.+|..+++.|+++.+.+||||+
T Consensus 595 ~e~eKf~kL~eLl~e~~---e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTs 671 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERY---EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATS 671 (997)
T ss_pred CchHHHHHHHHHHHHHh---hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehh
Confidence 8899999999999875 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc-CCCCcCCCC
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD-LPLDKLQLP 763 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~-~~l~~~~~~ 763 (848)
+++||+|++.+.+|||||+|...++|+||+|||||+|+.|.|++|+.|.+..+...|-+ +.+.+.+.|
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999977666555533 333333433
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-51 Score=468.71 Aligned_cols=357 Identities=30% Similarity=0.484 Sum_probs=302.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.++++|.++||..|+++|.++|+.+++++|++++||||||||++|++|+++.+... ..+.+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCce
Confidence 4779999999999999999999999999999999999999999999999999999999999876421 12347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+|||+||++||.|+.+.+..+.... .+.+..++|+.....+...+.. +++|+|+||++|.+++... ...+.++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~---~~~l~~i~l 173 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRVYDMIDKR---HLRVDDLKL 173 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcC-CCCEEEECcHHHHHHHHhC---CcccccccE
Confidence 9999999999999999988887643 6777888888877665555543 4799999999999998765 356789999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
|||||||++++.+|...+..++..+++..|++++|||+++.+..+...++..+..+..... ......+.+.+..+..
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 250 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---ELTLEGIRQFYVAVEK 250 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---CcccCCceEEEEecCh
Confidence 9999999999999999999999999999999999999999988888777765443322111 1122334455544443
Q ss_pred -hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 618 -ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 618 -~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
..+...+..++.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||++
T Consensus 251 ~~~~~~~l~~~~~~----~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~ 326 (401)
T PTZ00424 251 EEWKFDTLCDLYET----LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL 326 (401)
T ss_pred HHHHHHHHHHHHHh----cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc
Confidence 3344555544433 24568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+..++..+++
T Consensus 327 l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 327 LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888777755
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=432.13 Aligned_cols=363 Identities=30% Similarity=0.443 Sum_probs=311.5
Q ss_pred cCCCCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCC
Q 003100 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (848)
Q Consensus 370 ~~~~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~ 447 (848)
+...|+.+.++|++|+|.|+++++|..|+|.+|+.+|..++|.++.. +++|.++..|+|||.||.|.+|.++--.
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---
Confidence 47789999999999999999999999999999999999999999984 7999999999999999999998776322
Q ss_pred CCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC
Q 003100 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (848)
Q Consensus 448 ~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~ 527 (848)
..-|.+++|+|||+||.|+.+.+.++.++. ++...+.+.+..... -..+ ..+|+|+|||.+++++..-.
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r-G~~i---~eqIviGTPGtv~Dlm~klk- 226 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR-GNKL---TEQIVIGTPGTVLDLMLKLK- 226 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc-CCcc---hhheeeCCCccHHHHHHHHH-
Confidence 233579999999999999999999998876 788888777763321 1111 25899999999999998732
Q ss_pred cccccCCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccc
Q 003100 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPV 606 (848)
Q Consensus 528 ~~~~l~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~ 606 (848)
.+.+..++++|+||||.|++ .||+++-..|...+|++.|+++||||....+..++..++.++..++-- .......
T Consensus 227 -~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk---~eel~L~ 302 (477)
T KOG0332|consen 227 -CIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK---REELALD 302 (477)
T ss_pred -hhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee---hhhcccc
Confidence 35678899999999999986 569999999999999999999999999999999999998876555421 1223456
Q ss_pred eeecccccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc
Q 003100 607 KIKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 607 ~v~q~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
+++|+|+.|.. ..|++.+.++..-. .-+..||||.|+..+..++..|...|+.|..+||.|...+|..+++.|+.
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~----tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~ 378 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLL----TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE 378 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhh----hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc
Confidence 78999988876 57888888754432 34689999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCCC------ChhHHHHHhhccCCCCCCceEEEEeCcch-hhHHHHhcc
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD 754 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e-~~~l~~L~~ 754 (848)
|..+|||+|+|++||||++.|++|||||+|. +++.|+||+|||||.|+.|.++.|+...+ ...++.|++
T Consensus 379 g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 379 GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHH
Confidence 9999999999999999999999999999994 78999999999999999999999987643 455556655
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-51 Score=442.98 Aligned_cols=362 Identities=29% Similarity=0.448 Sum_probs=302.2
Q ss_pred CcccCCCCHHHHH----------HHHHcCCCCCcHHHHHHHHHHhC---------CCCEEEEcCCCCcchHHHHHHHHHH
Q 003100 380 RFDECGISPLTIK----------ALTAAGYIQMTRVQEATLSACLE---------GKDAVVKAKTGTGKSIAFLLPAIEA 440 (848)
Q Consensus 380 ~f~~l~l~~~l~~----------~L~~~g~~~~t~iQ~~aI~~il~---------g~dvIv~a~TGSGKTlaflLPil~~ 440 (848)
.|+.+++++.+.. ++.++++..+.|+|..++|+++. .+|++|.||||||||++|.|||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 3666666655443 48899999999999999999863 5799999999999999999999998
Q ss_pred HHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCC----cEEEeChH
Q 003100 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPC----QILVATPG 516 (848)
Q Consensus 441 l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~----~IIV~TPg 516 (848)
+.... ...++||||+||++|+.|++..|.++.... ++.|+.+.|..+...+...+..... ||+|+|||
T Consensus 208 L~~R~-------v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 208 LSSRP-------VKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HccCC-------ccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 86542 334799999999999999999999998654 8889999999999988888877665 99999999
Q ss_pred HHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCc--------------------------------
Q 003100 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR-------------------------------- 564 (848)
Q Consensus 517 rLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~-------------------------------- 564 (848)
||.+||.+.++ +.|.+++++||||||+|++..|...+..++..+..
T Consensus 280 RLVDHl~~~k~--f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 280 RLVDHLNNTKS--FDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred HHHHhccCCCC--cchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 99999998764 56889999999999999998887776665543321
Q ss_pred --cceeEEEeccCChHHHHHHHHHhccceEEEeec-CCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEE
Q 003100 565 --RRQSLLFSATMPKEVRRISQLVLKREHTYIDTV-GLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVI 641 (848)
Q Consensus 565 --~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~-~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiL 641 (848)
..+.+++|||+...-..+...-++.|..+.... .......+..+.+.++.+....+...++.++... .-.++|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~----k~~r~l 433 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN----KLNRTL 433 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh----hcceEE
Confidence 234688999998877777777777653332221 1234456777888888888878888888888764 456999
Q ss_pred EEEecchHHHHHHHHHH----HhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCC
Q 003100 642 VFCSTGMVTSLLYLLLR----EMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPD 717 (848)
Q Consensus 642 VF~~s~~~a~~l~~~L~----~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s 717 (848)
+|+++...+.+++..|+ ...+.+..+.|.++...|.+.+..|..|++.||||||+++||||+.+|++|||||+|.+
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~ 513 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPAS 513 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCch
Confidence 99999999999999887 33677888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhccCCCCCCceEEEEeCcchh-hHHHHhccC
Q 003100 718 REQYIHRLGRTGREGKEGEGVLLLAPWEE-YFLDDLKDL 755 (848)
Q Consensus 718 ~~~yiQRiGRaGR~G~~G~~i~l~~~~e~-~~l~~L~~~ 755 (848)
..+|+||+|||||+|+.|.|++++...+. .|.+.|++.
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 99999999999999999999999998764 566666653
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-49 Score=478.67 Aligned_cols=349 Identities=21% Similarity=0.271 Sum_probs=272.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
.+++.+.++|.++||..||++|.++|+.+++|+|+++++|||||||+||++|+++.+.+.. +.++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~---------~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP---------RATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC---------CcEEEEEcCh
Confidence 3789999999999999999999999999999999999999999999999999999987532 3589999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHH-hccCcccccCCccEEEEecc
Q 003100 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 465 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~-~~~~~~~~l~~l~~lVIDEA 543 (848)
|+||.|+...+..+. ..++.+..+.|+.... +...+. ..++|||+||++|...+. ....+...++++++||||||
T Consensus 91 raLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~~-~r~~i~-~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 91 KALAADQLRAVRELT--LRGVRPATYDGDTPTE-ERRWAR-EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEEeCCCCHH-HHHHHh-cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 999999999999886 3478888888887643 333333 348999999999975432 22222234789999999999
Q ss_pred cccccccchhhHHHHHHhc-------CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCccccccee-ecccc--
Q 003100 544 DHLLDLGFRKDVENIVDCL-------PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKI-KQSCL-- 613 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~~l-------~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v-~q~~~-- 613 (848)
|.+.+. |+..+..++..+ +.++|++++|||+++... ++..++..+..+++..+.........+ ...+.
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~ 244 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGSPRGARTVALWEPPLTEL 244 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCCCcCceEEEEecCCcccc
Confidence 999874 777766655543 467899999999999866 455666555444432211110000000 00000
Q ss_pred ---------cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--------ccceeeecCCcchhhH
Q 003100 614 ---------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------KMNVREMYSRKPQLYR 676 (848)
Q Consensus 614 ---------~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--------~~~v~~lhg~ls~~~R 676 (848)
......+...+..++. .+.++||||+|++.++.++..|... +..+..+||++++.+|
T Consensus 245 ~~~~~~~~r~~~~~~~~~~l~~l~~------~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 245 TGENGAPVRRSASAEAADLLADLVA------EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred ccccccccccchHHHHHHHHHHHHH------CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 0001223344444443 2569999999999999999998764 5678999999999999
Q ss_pred HHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeC--cchhhHHHHhcc
Q 003100 677 DRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA--PWEEYFLDDLKD 754 (848)
Q Consensus 677 ~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~--~~e~~~l~~L~~ 754 (848)
..+++.|++|++++||||+++++|||||+|++||+||+|.+.++|+||+|||||.|+.|.+++++. +.|.+++..++.
T Consensus 319 ~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~ 398 (742)
T TIGR03817 319 RELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEA 398 (742)
T ss_pred HHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 567777765543
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-50 Score=423.99 Aligned_cols=355 Identities=31% Similarity=0.508 Sum_probs=319.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|++++|++.+++.+...||++|+.+|+.||..+..|.|+++++.+|+|||.+|.+++++.+--. .....|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--------VKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--------hHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999887211 123469
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
|+++|||+||.|+......+... .++.+..++||.....+...+....++|+|+|||++.+++... .+....++++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmf 173 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMF 173 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEE
Confidence 99999999999999777766554 4889999999999987777777777899999999999999876 4567789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
|+||||.++..||.+++..|++.+|++.|++++|||+|.++..+.+.++..+..+. .. ....+...++|+|+.+..+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~-vk--k~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRIL-VK--KDELTLEGIKQFYINVEKE 250 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEE-ec--chhhhhhheeeeeeecccc
Confidence 99999999999999999999999999999999999999999999999998655443 21 1223466788999888888
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.|+..|+.+... -...+|||||...+..+...|...++.+.++|+.|.+.+|..++..|+.|..+|||+|+.++
T Consensus 251 ~k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 251 EKLDTLCDLYRR------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred ccccHHHHHHHh------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 899999888872 24789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
||+|+..+..||+|++|...+.|+||+||+||.|++|.++.+++..+...++++++
T Consensus 325 rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred cccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999888887765
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-50 Score=429.05 Aligned_cols=360 Identities=32% Similarity=0.466 Sum_probs=322.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
.-.|..+||+..+++++.+.||..|||+|+++||.+++++|++..|.||||||.||++|+++++.... ..|.+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999987553 34679
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++|||+||.|....++.+.+.. ++.+.+++||..+..+...+.. ++|||++|||+++...-.- .+.|+.++|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem---~l~l~svey 167 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEM---TLTLSSVEY 167 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehhe---eccccceee
Confidence 9999999999999999999987654 7889999999998876666644 4799999999998766544 467899999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
||+||||+++++||.+++.+++..++..+|+++||||+|..+..+++..+..|..+--. ........++..+..+..
T Consensus 168 VVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld---vetkise~lk~~f~~~~~ 244 (529)
T KOG0337|consen 168 VVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD---VETKISELLKVRFFRVRK 244 (529)
T ss_pred eeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee---hhhhcchhhhhheeeecc
Confidence 99999999999999999999999999999999999999999999999988755444211 122345566777888899
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..|...|..++..... +.+++|||+|..+++.+...|+..|+.+..++|.|++..|...+..|..++..+||.|+++
T Consensus 245 a~K~aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 9999999999987753 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccC
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDL 755 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~ 755 (848)
+||+|||..+.|||||+|.+..-|+||+||++|+|+.|.+|.|+.+.+..++-+|...
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998888777653
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.8e-49 Score=437.53 Aligned_cols=349 Identities=30% Similarity=0.461 Sum_probs=309.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
...|+++-|..+++..|+..+|..||++|..|||+++.+-|+||+|..|+|||++|.+.+++.+... ...+.
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q 95 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQ 95 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--------cCcce
Confidence 3569999999999999999999999999999999999999999999999999999999888776432 22357
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
++||+||||+|.|+.+.+.+++..+.++++.+++||+....+..+++. ++|+|+|||||..+++.. .++.+++++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~---~~n~s~vrl 170 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELG---AMNMSHVRL 170 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhc---CCCccceeE
Confidence 999999999999999999999999999999999999999888877765 789999999999999987 678899999
Q ss_pred EEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 538 lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+||||||.|++ ..|+.++..|+..+|+.+|++.||||.|..+.++...+++.+..+ ... ........++|+++..+
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lV-r~n--~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALV-RFN--ADDVQLFGIKQYVVAKC 247 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhccccee-ecc--cCCceeechhheeeecc
Confidence 99999999998 559999999999999999999999999999999999999865433 222 12234456777776554
Q ss_pred h--------hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCc
Q 003100 617 H--------ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR 688 (848)
Q Consensus 617 ~--------~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~ 688 (848)
. ..+++.|.+++... |-.+.||||+....|+-++.+|...|+.|-++.|.|+|.+|..+++.++.-.+
T Consensus 248 s~nnsveemrlklq~L~~vf~~i----py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSI----PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhC----chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 3 23556666655543 55689999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 689 LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
+|||+||..+||||-++|++|||.|+|.+.++|.||||||||.|..|.+++|+...+.
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999987543
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.4e-47 Score=454.18 Aligned_cols=341 Identities=20% Similarity=0.246 Sum_probs=262.0
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 384 CGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 384 l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
++....+...++. +||..++|+|.++|++++.|+|+|+++|||+|||+||+||++.. +..+|||+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVIS 507 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVIS 507 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEe
Confidence 4555666666664 79999999999999999999999999999999999999999842 12589999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhc-----CCCcEEEeChHHHHH--HHHhccCcccccCCc
Q 003100 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES-----DPCQILVATPGRLLD--HIENKSGLSVRLMGL 535 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~-----~~~~IIV~TPgrLl~--~L~~~~~~~~~l~~l 535 (848)
|+++|+.++...+... ++.+..+.++.........+.. +.++|||+||++|.. .+.+..........+
T Consensus 508 PLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 508 PLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred CHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999998665555442 7888889998876655443322 568999999999862 222210001123458
Q ss_pred cEEEEeccccccccc--chhhHHHH--HHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecc
Q 003100 536 KMLVLDEADHLLDLG--FRKDVENI--VDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQS 611 (848)
Q Consensus 536 ~~lVIDEAH~ll~~g--f~~~l~~I--l~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~ 611 (848)
.+|||||||++++|| |++.+..+ +....+..|+++||||++..+...+...+......+-..... .+ ++ .
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---Rp-NL--~ 656 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RP-NL--W 656 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---cc-ce--E
Confidence 899999999999998 88888764 444445788999999999988875555443322222111111 11 11 2
Q ss_pred cccCChh-hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceE
Q 003100 612 CLVAPHE-LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLI 690 (848)
Q Consensus 612 ~~~~~~~-~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~V 690 (848)
|.+++.. .....+..++... ..+...||||.|++.|+.++..|...|+.+..|||+|++.+|..+++.|..|++.|
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~---~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKEN---HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhc---ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 2222222 2234444555432 23557899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 691 LVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 691 LVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
||||+++++|||+|+|++||||++|.+++.|+||+|||||.|..|.|++|+++.|...++.+
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876555544
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-47 Score=423.19 Aligned_cols=366 Identities=25% Similarity=0.367 Sum_probs=299.7
Q ss_pred ccCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCC
Q 003100 378 QKRFDE----CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (848)
Q Consensus 378 ~~~f~~----l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~ 453 (848)
..+|.+ +.+++.+++.+...+|..|+|+|.+|||.++.+++++.|||||||||++|++|++++|..... ....
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~ 207 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHK 207 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---ccCc
Confidence 345665 578999999999999999999999999999999999999999999999999999999987643 1224
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhc-CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 454 PPIYVLILCPTRELASQIAAEAIALLKN-HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 454 ~~~~vLIL~PTreLa~Qi~~~l~~l~~~-~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.|.+++|+.|||+||.|++.++.++... ...+.+..+............+....++|+|.||-+|..++.... ..+.+
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~-~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK-LNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC-ccchh
Confidence 5789999999999999999999998621 112233332222111111122222347999999999999997652 13568
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeec
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQ 610 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q 610 (848)
..+.++|+||||++++. .|..++..|+..+. ++..+-+||||++..+++.+.........++- +.... ....+.|
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~viv--g~~~s-a~~~V~Q 363 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIV--GLRNS-ANETVDQ 363 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEE--ecchh-Hhhhhhh
Confidence 89999999999999998 89999999988654 56778899999999999999998876555543 22222 2345666
Q ss_pred ccccCC-hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHH-HHhccceeeecCCcchhhHHHHHHHHhcCCc
Q 003100 611 SCLVAP-HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL-REMKMNVREMYSRKPQLYRDRISEEFRASKR 688 (848)
Q Consensus 611 ~~~~~~-~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L-~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~ 688 (848)
..+.+. ...|+..+..++... -..++|||+.+.+.|..|+..| .-.++.+.++||..++.+|..++++|+.|++
T Consensus 364 elvF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 665554 456777777777765 3558999999999999999999 6668999999999999999999999999999
Q ss_pred eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 689 LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
.|||||++++||+|+.+|++|||||+|.+..+|+||+||+||+|+.|++|+||+..+..+++.+..
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999888876654
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.1e-46 Score=429.24 Aligned_cols=330 Identities=21% Similarity=0.264 Sum_probs=252.9
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
.+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+|||+||++|+.|+...+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999998731 125899999999999998887
Q ss_pred HHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc--
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-- 550 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-- 550 (848)
..+ ++.+..+.++...... ...+..+.++|+|+||+++......... .....++++|||||||++++||
T Consensus 72 ~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 72 KAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccccc
Confidence 754 6677777776554322 1233455689999999998542210000 0135689999999999999988
Q ss_pred chhhHHHHH--HhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHH
Q 003100 551 FRKDVENIV--DCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLL 628 (848)
Q Consensus 551 f~~~l~~Il--~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL 628 (848)
|+..+..+. ....+..+++++|||+++.+.......+......+......... +... +..........+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n----l~~~-v~~~~~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN----LYYE-VRRKTPKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC----cEEE-EEeCCccHHHHHHHHH
Confidence 777776552 22335788999999999987665544433221122111111111 1111 1111112344444554
Q ss_pred HHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCe
Q 003100 629 KEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 629 ~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
... .++..+||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++|++.|||||+++++|||+|+|++
T Consensus 221 ~~~---~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~ 297 (470)
T TIGR00614 221 RKE---FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRF 297 (470)
T ss_pred HHh---cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceE
Confidence 432 24556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 709 VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 709 VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
||||++|.+.+.|+||+|||||.|..|.|++|+++.|...++.+-
T Consensus 298 VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 298 VIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred EEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999999999999999887776653
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-44 Score=428.99 Aligned_cols=337 Identities=20% Similarity=0.283 Sum_probs=258.2
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcC
Q 003100 385 GISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (848)
Q Consensus 385 ~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~P 463 (848)
++.....+.|++ +||..++|+|.++|+.+++|+|+++++|||+|||++|++|++.. . ..+|||+|
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~-----------g~tlVisP 73 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D-----------GLTLVVSP 73 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C-----------CCEEEEec
Confidence 344445555654 79999999999999999999999999999999999999999732 1 15899999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEE
Q 003100 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (848)
Q Consensus 464 TreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVI 540 (848)
+++|+.|+.+.+..+ ++.+.++.++....... ..+..+..+|+|+||++|....... .+...++++|||
T Consensus 74 l~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVI 145 (607)
T PRK11057 74 LISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAV 145 (607)
T ss_pred HHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEE
Confidence 999999998888764 56677777765544322 2344556899999999987422111 123457899999
Q ss_pred eccccccccc--chhhHHHHHH--hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 541 DEADHLLDLG--FRKDVENIVD--CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 541 DEAH~ll~~g--f~~~l~~Il~--~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
||||++++|| |++.+..+.. ...+..+++++|||++..+.......+......+........ ++ .+....
T Consensus 146 DEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~----nl--~~~v~~ 219 (607)
T PRK11057 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP----NI--RYTLVE 219 (607)
T ss_pred eCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC----cc--eeeeee
Confidence 9999999987 7776655422 223578899999999988765443333222222222111111 11 122222
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
.......+..++.. ..+.++||||+|++.|+.++..|...++.+..+||+|++.+|..+++.|+.|++.|||||++
T Consensus 220 ~~~~~~~l~~~l~~----~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 220 KFKPLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred ccchHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 22333444444433 35679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
+++|||+|+|++|||||+|.+.++|+||+|||||.|.+|.|++|+++.|..+++.+.
T Consensus 296 ~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877766553
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9.1e-44 Score=422.93 Aligned_cols=327 Identities=22% Similarity=0.329 Sum_probs=259.2
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 392 KALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 392 ~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
+.|++ +||..++++|.++|+.+++|+|+++++|||+|||++|++|++.. . ..+|||+|+++|+.|
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-----------g~~lVisPl~sL~~d 68 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-----------GLTVVISPLISLMKD 68 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-----------CcEEEEcCCHHHHHH
Confidence 34543 89999999999999999999999999999999999999999731 1 158999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
++..+..+ ++.+..+.++....... ..+..+.++|+++||++|....... .....++++|||||||++.
T Consensus 69 q~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 69 QVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVS 140 (591)
T ss_pred HHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccc
Confidence 98888764 57777887776654332 2344567899999999996433222 2345689999999999999
Q ss_pred ccc--chhhHHHHHH---hcCccceeEEEeccCChHHHHHHHHHhcc--ceEEEeecCCCcccccceeecccccCChhhH
Q 003100 548 DLG--FRKDVENIVD---CLPRRRQSLLFSATMPKEVRRISQLVLKR--EHTYIDTVGLGSVETPVKIKQSCLVAPHELH 620 (848)
Q Consensus 548 ~~g--f~~~l~~Il~---~l~~~~Q~ll~SATl~~~v~~l~~~~l~~--~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k 620 (848)
+|| |++.+..+.. .++ ..+++++|||++..+.......+.. +..++. ... . ....+.......+
T Consensus 141 ~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~~~---r---~nl~~~v~~~~~~ 211 (591)
T TIGR01389 141 QWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT--SFD---R---PNLRFSVVKKNNK 211 (591)
T ss_pred cccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec--CCC---C---CCcEEEEEeCCCH
Confidence 987 7777766643 333 4559999999999887655554432 222221 111 1 1112222233445
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcccc
Q 003100 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARG 700 (848)
Q Consensus 621 ~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rG 700 (848)
...+..++..+ .+.++||||+|++.++.++..|...++.+..+||+|+..+|..+++.|.+|.+.|||||+++++|
T Consensus 212 ~~~l~~~l~~~----~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~G 287 (591)
T TIGR01389 212 QKFLLDYLKKH----RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287 (591)
T ss_pred HHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 55666666543 35689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 701 MDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 701 lDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
||+|+|++||||++|.+.+.|+|++|||||.|..|.|++++++.|...++.+-
T Consensus 288 ID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877666553
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.6e-42 Score=425.41 Aligned_cols=346 Identities=21% Similarity=0.282 Sum_probs=253.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
+++.+.+.+.. +|..|||+|.++|+.+++|+|++++||||||||++|++|+++++....... ....++++|||+|||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 56777676655 799999999999999999999999999999999999999999987643211 112357899999999
Q ss_pred HHHHHHHHHHHHHh-----------hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCC
Q 003100 466 ELASQIAAEAIALL-----------KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (848)
Q Consensus 466 eLa~Qi~~~l~~l~-----------~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~ 534 (848)
+||.|+++.+...+ ...+++.+.+.+|+........ ....+++|+|+||++|..++.+. .+...+.+
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~-~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~ 172 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK-MLKKPPHILITTPESLAILLNSP-KFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH-HHhCCCCEEEecHHHHHHHhcCh-hHHHHHhc
Confidence 99999988665322 1223678899999987654443 33456899999999998777543 22235789
Q ss_pred ccEEEEecccccccccchhhHHHHH----HhcCccceeEEEeccCChHHHHHHHHHhcc-------ceEEEeecCCCccc
Q 003100 535 LKMLVLDEADHLLDLGFRKDVENIV----DCLPRRRQSLLFSATMPKEVRRISQLVLKR-------EHTYIDTVGLGSVE 603 (848)
Q Consensus 535 l~~lVIDEAH~ll~~gf~~~l~~Il----~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~-------~~~~i~~~~~~~~~ 603 (848)
+++|||||||.+.+..++..+..++ ...+...|++++|||+++. ..++..+... +..++.... .
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~----~ 247 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARF----V 247 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCC----C
Confidence 9999999999999776655554443 3334678999999999763 3444443221 112222110 0
Q ss_pred ccceeecc-----cccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh------ccceeeecCCcc
Q 003100 604 TPVKIKQS-----CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSRKP 672 (848)
Q Consensus 604 ~~~~v~q~-----~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~ls 672 (848)
....+... ............+...|...+. ..+++||||+|+..|+.++..|... +..+..+||+++
T Consensus 248 k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 248 KPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred ccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 11111100 0011112222333344444332 3568999999999999999999873 467999999999
Q ss_pred hhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC-CCceEEEEeCc
Q 003100 673 QLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG-KEGEGVLLLAP 743 (848)
Q Consensus 673 ~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G-~~G~~i~l~~~ 743 (848)
+.+|..+++.|++|.++|||||+++++|||+|+|++||+|+.|.+..+|+||+|||||.+ ..+.++++...
T Consensus 326 ~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 326 REVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999864 44555555544
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-42 Score=420.66 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=258.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.|+++++++.+++++.+.||..|+|+|.++++. +++|+|++++||||||||++|.+|+++++... .++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-----------~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-----------GKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----------CcE
Confidence 588999999999999999999999999999998 77899999999999999999999999988531 379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
|||+||++||.|++..+.++.. . ++.+..++|+...... .+ ..++|+||||+++..++.+.. ..+.++++|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~---~~l~~v~lv 141 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGA---PWLDDITCV 141 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcCh---hhhhhcCEE
Confidence 9999999999999999997643 2 7889999998754321 12 247999999999988887642 346789999
Q ss_pred EEecccccccccchhhHHHHHHhc---CccceeEEEeccCChHHHHHHHHHhcc-------ceEEEeecCCCccccccee
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKEVRRISQLVLKR-------EHTYIDTVGLGSVETPVKI 608 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l---~~~~Q~ll~SATl~~~v~~l~~~~l~~-------~~~~i~~~~~~~~~~~~~v 608 (848)
||||+|.+.+.+++..++.++..+ .+..|+|++|||+++. ..++.++... +......+.... .....-
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~-~~~~~~ 219 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGG-AIHFDD 219 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCC-eecccc
Confidence 999999999988888888876654 4678999999999863 3344443211 000000000000 000000
Q ss_pred ecccccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---------------------------
Q 003100 609 KQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------------------------- 660 (848)
Q Consensus 609 ~q~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--------------------------- 660 (848)
.+..+.... ......+...+. .++++||||+|++.|+.++..|...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 220 SQREVEVPSKDDTLNLVLDTLE------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred ccccCCCccchHHHHHHHHHHH------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 111111111 122222222221 4679999999999999888877542
Q ss_pred ---------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----cC-----CCCChhHHH
Q 003100 661 ---------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG-----IPPDREQYI 722 (848)
Q Consensus 661 ---------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----yd-----~P~s~~~yi 722 (848)
...+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~ 373 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYH 373 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHH
Confidence 136889999999999999999999999999999999999999999999997 66 688999999
Q ss_pred HHhhccCCCCCC--ceEEEEeCcc
Q 003100 723 HRLGRTGREGKE--GEGVLLLAPW 744 (848)
Q Consensus 723 QRiGRaGR~G~~--G~~i~l~~~~ 744 (848)
||+|||||.|.. |.|++++...
T Consensus 374 Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 374 QMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999864 9999998765
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.2e-41 Score=407.89 Aligned_cols=336 Identities=20% Similarity=0.239 Sum_probs=260.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.|+++++++.+.+.|.+.||..|+|+|.++++. +++|+|++++||||||||++|.+|+++++... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 578999999999999999999999999999986 78999999999999999999999999988643 2379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
|||+|+++||.|+++.+..+.. .++.+..++|+...... .+ ..++|+|+||+++..++.+.. ..+.++++|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lv 142 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRHGS---SWIKDVKLV 142 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhCCc---hhhhcCCEE
Confidence 9999999999999999987643 37889999998764322 12 347999999999988887542 346889999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCccccccee-----ecccc
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKI-----KQSCL 613 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v-----~q~~~ 613 (848)
||||+|.+.+.+++..+..++..+....|++++|||+++. ..++.++.. .. +.. ...+..+ .+.+.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~-~~-~~~------~~rpv~l~~~~~~~~~~ 213 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNA-EL-VVS------DWRPVKLRKGVFYQGFL 213 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCC-cc-ccC------CCCCCcceeeEecCCee
Confidence 9999999999889999999999999899999999999873 555554322 11 110 0111111 11111
Q ss_pred cCChh--hH-HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH-------------------------------
Q 003100 614 VAPHE--LH-FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE------------------------------- 659 (848)
Q Consensus 614 ~~~~~--~k-~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~------------------------------- 659 (848)
..... .+ ...+...+...+. .++++||||+|++.|+.++..|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 214 FWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred eccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 11111 11 1112222222222 357999999999999887766632
Q ss_pred --hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE-------cCCCC-ChhHHHHHhhccC
Q 003100 660 --MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ-------VGIPP-DREQYIHRLGRTG 729 (848)
Q Consensus 660 --~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~-------yd~P~-s~~~yiQRiGRaG 729 (848)
....+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|+||+||||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 1235899999999999999999999999999999999999999999999994 55544 5679999999999
Q ss_pred CCC--CCceEEEEeCcch
Q 003100 730 REG--KEGEGVLLLAPWE 745 (848)
Q Consensus 730 R~G--~~G~~i~l~~~~e 745 (848)
|.| ..|.+++++.+.+
T Consensus 372 R~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCcCCCceEEEEecCcc
Confidence 976 5799999987654
No 44
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-42 Score=344.25 Aligned_cols=324 Identities=29% Similarity=0.472 Sum_probs=278.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
.+-|.++-|.|++++++-..||++|+.+|.++||...-|.||+++|..|.|||.+|.|..++.+--- ...+.
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--------~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--------DGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--------CCeEE
Confidence 4679999999999999999999999999999999999999999999999999999999998877321 12357
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+|++|.||+||.||..+..++.++.|++.+.+++||..++.+...++. .++|+|+|||+++.+..+. .++++++++
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k---~l~lk~vkh 188 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNR---SLNLKNVKH 188 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhc---cCchhhcce
Confidence 999999999999999999999999999999999999999988888876 5899999999999999887 578999999
Q ss_pred EEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 538 lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+|+||||.|++ .+.+.++..|....|...|+++||||++++++..++.++..|..+.- .....-+...+.|+|+...
T Consensus 189 FvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v--DdE~KLtLHGLqQ~YvkLk 266 (387)
T KOG0329|consen 189 FVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV--DDEAKLTLHGLQQYYVKLK 266 (387)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc--cchhhhhhhhHHHHHHhhh
Confidence 99999999874 44688899999999999999999999999999999999987655432 1222335567888999888
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...|-..+..+|... .-.+++||+.+..... | ..+ ||||++
T Consensus 267 e~eKNrkl~dLLd~L----eFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~l 307 (387)
T KOG0329|consen 267 ENEKNRKLNDLLDVL----EFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDL 307 (387)
T ss_pred hhhhhhhhhhhhhhh----hhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhh
Confidence 888888888877654 2348999998865510 2 223 899999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~~ 754 (848)
++||+||..|+.|||||.|.+..+|+||+|||||.|..|.+++|++.. +..+++.+++
T Consensus 308 fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 308 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 999999999999999999999999999999999999999999999864 4455555543
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2e-40 Score=392.79 Aligned_cols=320 Identities=18% Similarity=0.159 Sum_probs=239.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE-EEcCcHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL-ILCPTRELASQIAAE 474 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~-dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL-IL~PTreLa~Qi~~~ 474 (848)
.||. |||||.++|+.++.|+ ++++++|||||||.+|.++++.. ... ...++.| +++|||+||.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHH
Confidence 5998 9999999999999998 57788999999999776555522 111 1123444 577999999999999
Q ss_pred HHHHhhcCC----------------------CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC-----
Q 003100 475 AIALLKNHD----------------------GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG----- 527 (848)
Q Consensus 475 l~~l~~~~~----------------------~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~----- 527 (848)
+.++.+..+ .+.+.+++||.+...+...+. .+++|||+|+ +++.+..-
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~-~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP-HRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC-CCCcEEEECH----HHHcCCccccccc
Confidence 999887542 478999999999887766664 5689999995 44443310
Q ss_pred cc-----c---ccCCccEEEEecccccccccchhhHHHHHHhc--Ccc---ceeEEEeccCChHHHHHHHHHhccceEEE
Q 003100 528 LS-----V---RLMGLKMLVLDEADHLLDLGFRKDVENIVDCL--PRR---RQSLLFSATMPKEVRRISQLVLKREHTYI 594 (848)
Q Consensus 528 ~~-----~---~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l--~~~---~Q~ll~SATl~~~v~~l~~~~l~~~~~~i 594 (848)
.. + .+.++++||||||| ++++|...+..|+..+ ++. +|+++||||++.++..+...++..+.. +
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~-i 233 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK-H 233 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce-e
Confidence 00 0 26789999999999 7899999999999965 432 699999999999888877777654432 2
Q ss_pred eecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchh
Q 003100 595 DTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQL 674 (848)
Q Consensus 595 ~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~ 674 (848)
.... .. .....+.+ ++.+....++..+...+...+. ...+++||||||++.|+.++..|.+.++ ..+||+|++.
T Consensus 234 ~V~~-~~-l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~ 307 (844)
T TIGR02621 234 PVLK-KR-LAAKKIVK-LVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGA 307 (844)
T ss_pred eccc-cc-ccccceEE-EEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHH
Confidence 2211 11 11222333 2333444455444444433322 3457899999999999999999998776 9999999999
Q ss_pred hHH-----HHHHHHhc----CC-------ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCc-eE
Q 003100 675 YRD-----RISEEFRA----SK-------RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG-EG 737 (848)
Q Consensus 675 ~R~-----~i~~~F~~----G~-------~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G-~~ 737 (848)
+|. .+++.|++ |. ..|||||+++++||||+. ++||++..| .++|+||+||+||.|..| ..
T Consensus 308 dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~ 384 (844)
T TIGR02621 308 ERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQ 384 (844)
T ss_pred HHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCce
Confidence 999 78999987 54 689999999999999986 899998877 689999999999999854 34
Q ss_pred EEEeCc
Q 003100 738 VLLLAP 743 (848)
Q Consensus 738 i~l~~~ 743 (848)
++++..
T Consensus 385 i~vv~~ 390 (844)
T TIGR02621 385 IAVVHL 390 (844)
T ss_pred EEEEee
Confidence 555533
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-40 Score=375.71 Aligned_cols=330 Identities=23% Similarity=0.340 Sum_probs=259.1
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 392 KALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 392 ~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
..|+. +||..+++-|.++|..+++++|+++..|||.||++||+||++ +. . | .+|||+|..+|...
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAl--l~-~----------G-~TLVVSPLiSLM~D 72 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL--LL-E----------G-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHH--hc-C----------C-CEEEECchHHHHHH
Confidence 44553 799999999999999999999999999999999999999997 32 1 1 48999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
+.+.+... |+.+.++.+..+.... ...+..+..++++-+|++|..--... .+.-..+.++||||||++.
T Consensus 73 QV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHh
Confidence 88888775 6777777777554433 33445566899999999986432211 1223468999999999999
Q ss_pred ccc--chhhHHHHHHhcC--ccceeEEEeccCChHHHHHHHHHhccce--EEEeecCCCcccccceeecccccCChhhHH
Q 003100 548 DLG--FRKDVENIVDCLP--RRRQSLLFSATMPKEVRRISQLVLKREH--TYIDTVGLGSVETPVKIKQSCLVAPHELHF 621 (848)
Q Consensus 548 ~~g--f~~~l~~Il~~l~--~~~Q~ll~SATl~~~v~~l~~~~l~~~~--~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~ 621 (848)
+|| |++.+..+-.... ++..++.+|||.++.+...+...+.-.. .++... ........+... .....++
T Consensus 145 qWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~---~~~~~q~ 219 (590)
T COG0514 145 QWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEK---GEPSDQL 219 (590)
T ss_pred hcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhc---ccHHHHH
Confidence 998 9999988765432 3788999999999998877666554332 333221 111111111110 0122222
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccc
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGM 701 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGl 701 (848)
. ++.. .........||||.|++.++.++..|...|+.+..||++|+..+|..+.+.|..+++.|+|||.++++||
T Consensus 220 ~----fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGI 294 (590)
T COG0514 220 A----FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGI 294 (590)
T ss_pred H----HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCcc
Confidence 2 3332 1223566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 702 DYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 702 Dip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
|.|+|++|||||+|.|+++|+|-+|||||.|.+..|++|+++.|....+.+.
T Consensus 295 dKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 295 DKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976665543
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.1e-39 Score=394.39 Aligned_cols=321 Identities=19% Similarity=0.191 Sum_probs=247.0
Q ss_pred CCHHHHHHHH-HcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 386 ISPLTIKALT-AAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 386 l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+..+.+.+. .++|. ||++|.+||+.++++ .|++++|+||||||++|++|++..+... .++
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qv 503 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQV 503 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeE
Confidence 3445555555 46885 999999999999885 7999999999999999999999887542 379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
+|++||++||.|+++.+.+++... ++.+..++|+...... ...+..+.++|||+||.. +.. .+.+.++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~----~v~f~~L 574 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQK----DVKFKDL 574 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhC----CCCcccC
Confidence 999999999999999999988765 6788888887654332 234445668999999943 222 2457899
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
++|||||+|++ .......+..+++..|+++||||+.+....+...... ....+...... ...+..++...
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~-d~s~I~~~p~~----R~~V~t~v~~~ 644 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR-DLSIIATPPED----RLPVRTFVMEY 644 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC-CcEEEecCCCC----ccceEEEEEec
Confidence 99999999994 3445566777788899999999987655444333332 33444432211 11233333222
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEe
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVT 693 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa 693 (848)
.. ..+...+...+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|..++..|++|+++||||
T Consensus 645 ~~----~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVa 718 (926)
T TIGR00580 645 DP----ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVC 718 (926)
T ss_pred CH----HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 21 112222222221 3579999999999999999999985 688999999999999999999999999999999
Q ss_pred cCCccccccCCCCCeeEEcCCCC-ChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 694 SDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
|+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++.+
T Consensus 719 T~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 719 TTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred CChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 99999999999999999999975 678999999999999999999999865
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.7e-39 Score=378.48 Aligned_cols=345 Identities=19% Similarity=0.300 Sum_probs=271.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
+++.+.+.+... |..||+.|.+|||.|.+|+|++++||||||||+|+.||++..+.+.. ......++.||||+|.|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHH
Confidence 688899999888 99999999999999999999999999999999999999999999874 12234568999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc
Q 003100 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (848)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ 545 (848)
+|...+...+...+... |+.+...+|++.-.. .+....+++||+|+||+.|.-+|... .+.-.|.++++|||||+|.
T Consensus 84 ALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~e-r~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 84 ALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSE-KQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHc-CCccceecCCCChHH-hhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhh
Confidence 99999999999998854 899999999988664 44445678999999999998888664 3345588999999999999
Q ss_pred cccccchhhHH----HHHHhcCccceeEEEeccCChHHHHHHHHHhcc--ceEEEeecCCCcccccceeeccc---ccCC
Q 003100 546 LLDLGFRKDVE----NIVDCLPRRRQSLLFSATMPKEVRRISQLVLKR--EHTYIDTVGLGSVETPVKIKQSC---LVAP 616 (848)
Q Consensus 546 ll~~gf~~~l~----~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~--~~~~i~~~~~~~~~~~~~v~q~~---~~~~ 616 (848)
+.+...+.++. .+....+ +.|.|++|||..+ ...+++++... +..++.................. .-..
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccch
Confidence 98655444443 3333334 8899999999974 44466665544 33444433222111110000000 0001
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc-cceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~-~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
....+..+..+++++ ..+|||+||+..++.++..|++.+ ..+..+||.++...|..+.++|++|+.+++|||+
T Consensus 239 ~~~~~~~i~~~v~~~------~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 239 WAALYERIAELVKKH------RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred hHHHHHHHHHHHhhc------CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 123344455555443 489999999999999999999987 8999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCC-CCCCceEEEEeCcch
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGR-EGKEGEGVLLLAPWE 745 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR-~G~~G~~i~l~~~~e 745 (848)
.++-|||+.+|+.||||+.|.++..++||+||+|+ .|....++++....+
T Consensus 313 SLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~ 363 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD 363 (814)
T ss_pred chhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHH
Confidence 99999999999999999999999999999999995 556678888877643
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-39 Score=393.22 Aligned_cols=333 Identities=20% Similarity=0.230 Sum_probs=252.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
.|+++++++.+++.+...+|. ++++|.++++.++++++++++||||||||++|.+++++.+... .++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 578899999999999999998 9999999999999999999999999999999999999887542 2689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
|++|+++||.|+++.+.++.. .++.+...+|+...... .+ ..++|+|+||+++..++.+. ...+.++++||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~~---~~~l~~v~lvV 140 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHHD---PYIINDVGLIV 140 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhCC---hhHHhhcCEEE
Confidence 999999999999999988643 37788888887654321 12 24799999999998888765 23478899999
Q ss_pred EecccccccccchhhHHHHHHh---cCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc----
Q 003100 540 LDEADHLLDLGFRKDVENIVDC---LPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC---- 612 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~---l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~---- 612 (848)
|||||++.+.+++..++.++.. +++..|+|++|||+++. ..++.++.. .. +.. ...+..+....
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~-~~--~~~-----~~r~vpl~~~i~~~~ 211 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNA-SL--IKS-----NFRPVPLKLGILYRK 211 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCC-Cc--cCC-----CCCCCCeEEEEEecC
Confidence 9999999988888777777654 45678999999999864 445554321 11 100 00111111100
Q ss_pred -ccCC-hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-------------------------cccee
Q 003100 613 -LVAP-HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------------------------KMNVR 665 (848)
Q Consensus 613 -~~~~-~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-------------------------~~~v~ 665 (848)
.... .......+..++.... ..++++||||++++.|+.++..|... ...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 289 (674)
T PRK01172 212 RLILDGYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVA 289 (674)
T ss_pred eeeecccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEE
Confidence 0010 1111111333444332 24679999999999999999888653 12578
Q ss_pred eecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCC---------CCChhHHHHHhhccCCCCC--C
Q 003100 666 EMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI---------PPDREQYIHRLGRTGREGK--E 734 (848)
Q Consensus 666 ~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~---------P~s~~~yiQRiGRaGR~G~--~ 734 (848)
.+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+|| ++. |.+..+|.||+|||||.|. .
T Consensus 290 ~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 290 FHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred EecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 899999999999999999999999999999999999999965444 443 5688999999999999984 6
Q ss_pred ceEEEEeCcch
Q 003100 735 GEGVLLLAPWE 745 (848)
Q Consensus 735 G~~i~l~~~~e 745 (848)
|.+++++...+
T Consensus 369 g~~~i~~~~~~ 379 (674)
T PRK01172 369 GIGYIYAASPA 379 (674)
T ss_pred ceEEEEecCcc
Confidence 77888876543
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.8e-39 Score=385.82 Aligned_cols=313 Identities=20% Similarity=0.226 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 003100 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483 (848)
Q Consensus 404 ~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 483 (848)
.+-.+.+..+.+++++|++|+||||||++|.+++++.... +.++||++|||++|.|+++.+.+.+....
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 3445667777889999999999999999999999876521 23799999999999999999987765545
Q ss_pred CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc-cccccchhh-HHHHHHh
Q 003100 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-LLDLGFRKD-VENIVDC 561 (848)
Q Consensus 484 ~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~-ll~~gf~~~-l~~Il~~ 561 (848)
+..|++.+++.... +...+|+|+|||+|++++.++ ..+.++++|||||+|+ +++.+|.-. +..+...
T Consensus 74 g~~VGy~vr~~~~~-------s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~ 142 (819)
T TIGR01970 74 GQTVGYRVRGENKV-------SRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSS 142 (819)
T ss_pred CcEEEEEEcccccc-------CCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHh
Confidence 66677766654321 234799999999999999865 4578999999999994 677665433 3456666
Q ss_pred cCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHH-HHHHHHHHHHhhCCCCceE
Q 003100 562 LPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHF-QILHHLLKEHILGTPDYKV 640 (848)
Q Consensus 562 l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~-~~L~~lL~~~~~~~~~~ki 640 (848)
++++.|+|+||||++... + ..++.. ..++...+ ....++++|.......++ ..+...+...+. ...+.+
T Consensus 143 lr~dlqlIlmSATl~~~~--l-~~~l~~-~~vI~~~g-----r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~i 212 (819)
T TIGR01970 143 LREDLKILAMSATLDGER--L-SSLLPD-APVVESEG-----RSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSI 212 (819)
T ss_pred cCCCceEEEEeCCCCHHH--H-HHHcCC-CcEEEecC-----cceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcE
Confidence 788999999999998764 3 344432 23333322 223456666555444332 222223333222 235789
Q ss_pred EEEEecchHHHHHHHHHHH---hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCC-
Q 003100 641 IVFCSTGMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP- 716 (848)
Q Consensus 641 LVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~- 716 (848)
||||+++.+++.++..|.+ .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++|+|.
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 9999999999999999987 378899999999999999999999999999999999999999999999999999874
Q ss_pred -----------------ChhHHHHHhhccCCCCCCceEEEEeCcchhhHH
Q 003100 717 -----------------DREQYIHRLGRTGREGKEGEGVLLLAPWEEYFL 749 (848)
Q Consensus 717 -----------------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l 749 (848)
|.++|+||+|||||. .+|.||.|++..+...+
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 345799999999998 79999999998765433
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.4e-38 Score=378.67 Aligned_cols=318 Identities=21% Similarity=0.260 Sum_probs=239.2
Q ss_pred HHHHH-HHHcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEE
Q 003100 389 LTIKA-LTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461 (848)
Q Consensus 389 ~l~~~-L~~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL 461 (848)
.+.+. +..++|. ||++|+++|+.|.++ .+++++|+||||||++|++|++..+.. +.+++|+
T Consensus 249 ~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lil 316 (681)
T PRK10917 249 ELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALM 316 (681)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 34444 4467885 999999999999886 489999999999999999999987742 2479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 462 ~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
+||++||.|+++.+.+++... ++.+.+++|+...... ...+..+.++|+|+||+.+.+. ..+.++++|
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lv 387 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLV 387 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceE
Confidence 999999999999999998764 7899999999875432 3345556799999999887432 346789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
||||+|++.. .....+.......++++||||+.+....+.. +.......++..... ...+...+... .
T Consensus 388 VIDE~Hrfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p~~----r~~i~~~~~~~--~ 455 (681)
T PRK10917 388 IIDEQHRFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELPPG----RKPITTVVIPD--S 455 (681)
T ss_pred EEechhhhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCCCC----CCCcEEEEeCc--c
Confidence 9999999532 2233344445568999999998665433322 222223333322111 11232222221 1
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecc--------hHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTG--------MVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKR 688 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~--------~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~ 688 (848)
....+...+...+ ..+.+++|||+++ ..+..+++.|... ++.+..+||+|++.+|..+++.|++|++
T Consensus 456 -~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 532 (681)
T PRK10917 456 -RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEI 532 (681)
T ss_pred -cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 2223334444443 2467999999964 3456677777765 4689999999999999999999999999
Q ss_pred eEEEecCCccccccCCCCCeeEEcCCCC-ChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 689 LILVTSDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
+|||||+++++|||+|++++||+++.|. ..++|.||+||+||.|..|.|++++.
T Consensus 533 ~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 533 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999999999999997 57889999999999999999999995
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.7e-38 Score=390.97 Aligned_cols=318 Identities=18% Similarity=0.165 Sum_probs=243.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 389 LTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 389 ~l~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
...+....++| .||+.|.++|+.++.+ .|++++|+||+|||.+|+.+++..+.. +.+++||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLv 656 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLV 656 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEe
Confidence 34455667888 5999999999999987 899999999999999999888766532 24799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhh---hhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR---LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||++||.|+++.+.+.+... ++.+.+++|+.....+... +..+.++|||+||+.| .. .+.+.++++||
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~----~v~~~~L~lLV 727 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS----DVKWKDLGLLI 727 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----CCCHhhCCEEE
Confidence 99999999999999877654 5778888888776554433 3345689999999744 22 24567899999
Q ss_pred EecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhh
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL 619 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~ 619 (848)
|||+|++ |+. ....+..++.++|+++||||+.+....++...+.. ..++....... ..+++.+......
T Consensus 728 IDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d-~~~I~~~p~~r----~~v~~~~~~~~~~- 796 (1147)
T PRK10689 728 VDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD-LSIIATPPARR----LAVKTFVREYDSL- 796 (1147)
T ss_pred Eechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCC-cEEEecCCCCC----CCceEEEEecCcH-
Confidence 9999996 332 34556778889999999999887776666655543 34443322111 1222222221111
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.....++.+.. .+++++|||++++.++.+++.|.+. ++.+..+||+|++.+|.+++..|++|+++|||||+++
T Consensus 797 --~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIi 871 (1147)
T PRK10689 797 --VVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 (1147)
T ss_pred --HHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchh
Confidence 11122233322 3568999999999999999999987 7889999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCC-CChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 698 ARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
++|||+|+|++||.++.. .+..+|+||+||+||.|+.|.|++++.+
T Consensus 872 erGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 872 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred hcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999955443 3556899999999999999999998854
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.9e-38 Score=374.25 Aligned_cols=319 Identities=23% Similarity=0.278 Sum_probs=236.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 389 LTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 389 ~l~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
.+.+.+..++| .||++|+++|+.|+++ .+.+++|+||||||++|++|++..+.. +.+++|++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEC
Confidence 34556678899 5999999999999875 368999999999999999999987643 23699999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhH---hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~---~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||++||.|+++.+.+++... ++.+.+++|+..... ....+..+.++|||+||+.+.+ ...+.++++||
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~--------~~~~~~l~lvV 362 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE--------KVEFKRLALVI 362 (630)
T ss_pred CHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc--------cccccccceEE
Confidence 99999999999999998754 789999999987654 2334555678999999998753 23467899999
Q ss_pred EecccccccccchhhHHHHHHhcC--ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~--~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
|||+|++... .+. .+..... ..+++++||||+.+....+.. +.......++..... ...+...+.. .
T Consensus 363 IDEaH~fg~~-qr~---~l~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~p~~----r~~i~~~~~~--~ 431 (630)
T TIGR00643 363 IDEQHRFGVE-QRK---KLREKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDELPPG----RKPITTVLIK--H 431 (630)
T ss_pred EechhhccHH-HHH---HHHHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccCCCC----CCceEEEEeC--c
Confidence 9999996432 122 2222222 267899999997654332221 111112222221111 1122222221 2
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecc--------hHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCC
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTG--------MVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASK 687 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~--------~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~ 687 (848)
..+ ..+...+...+. .+.+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 432 ~~~-~~~~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 432 DEK-DIVYEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred chH-HHHHHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 222 334444444432 356899999976 3456677777653 678999999999999999999999999
Q ss_pred ceEEEecCCccccccCCCCCeeEEcCCCC-ChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 688 RLILVTSDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 688 ~~VLVaTdvl~rGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
.+|||||+++++|||+|++++||+++.|. +.++|.||+||+||.|..|.|++++.
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999999999999986 67889999999999999999999983
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.1e-38 Score=390.51 Aligned_cols=310 Identities=20% Similarity=0.270 Sum_probs=223.8
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhCCCCC--CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh-----------cCCCceE
Q 003100 421 VKAKTGTGKSIAFLLPAIEAVLKATSSST--TQLVPPIYVLILCPTRELASQIAAEAIALLK-----------NHDGIGV 487 (848)
Q Consensus 421 v~a~TGSGKTlaflLPil~~l~~~~~~~~--~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~-----------~~~~i~v 487 (848)
|+||||||||+||.||+|..++....... .....++++|||+|+|+|+.|+++.++..+. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999999999999999986531110 0112357899999999999999998875321 2246889
Q ss_pred EEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccch----hhHHHHHHhcC
Q 003100 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR----KDVENIVDCLP 563 (848)
Q Consensus 488 ~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~----~~l~~Il~~l~ 563 (848)
...+|+++...... +..++++|||+||++|..+|.+.. ...++++++|||||+|.|.+..++ ..+..+...++
T Consensus 81 ~vrtGDt~~~eR~r-ll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSK-LTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHH-HhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 99999998765444 444568999999999998887532 235789999999999999975444 44555555667
Q ss_pred ccceeEEEeccCChHHHHHHHHHhcc-ceEEEeecCCCcccccceeecccccCChh--------------------hHHH
Q 003100 564 RRRQSLLFSATMPKEVRRISQLVLKR-EHTYIDTVGLGSVETPVKIKQSCLVAPHE--------------------LHFQ 622 (848)
Q Consensus 564 ~~~Q~ll~SATl~~~v~~l~~~~l~~-~~~~i~~~~~~~~~~~~~v~q~~~~~~~~--------------------~k~~ 622 (848)
.+.|+|++|||+++ ...++.++... +..++.... .....+...+ ..... ....
T Consensus 158 ~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~----~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~ 231 (1490)
T PRK09751 158 TSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPA----MRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWP 231 (1490)
T ss_pred CCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCC----CcccceEEEE-ecCchhhccccccccccccchhhhhhhhH
Confidence 78999999999987 45566555432 233332111 1111121111 11000 0001
Q ss_pred HH-HHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc---------------------------------cceeeec
Q 003100 623 IL-HHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK---------------------------------MNVREMY 668 (848)
Q Consensus 623 ~L-~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~---------------------------------~~v~~lh 668 (848)
.+ ..++... ....++||||||+..|+.++..|++.. +.+..||
T Consensus 232 ~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HH 308 (1490)
T PRK09751 232 YIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHH 308 (1490)
T ss_pred HHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecc
Confidence 11 1222222 135689999999999999999997642 1257899
Q ss_pred CCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCC-CCCceEEEEeC
Q 003100 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE-GKEGEGVLLLA 742 (848)
Q Consensus 669 g~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~-G~~G~~i~l~~ 742 (848)
|++++.+|..+++.|++|++++||||+++++||||++|++||||+.|.++.+|+||+|||||. |..+.++++..
T Consensus 309 GsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 309 GSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred ccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999995 33345554443
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3e-38 Score=381.58 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=239.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCC
Q 003100 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG 484 (848)
Q Consensus 405 iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~ 484 (848)
+-.+.+.++.+++++|++|+||||||++|.+|+++.... ..++||++|||++|.|+++.+.+.+....+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 345667777789999999999999999999988864210 127999999999999999999877766567
Q ss_pred ceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc-cccccc-hhhHHHHHHhc
Q 003100 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-LLDLGF-RKDVENIVDCL 562 (848)
Q Consensus 485 i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~-ll~~gf-~~~l~~Il~~l 562 (848)
..+++.+++.... ....+|+|+|||+|++++..+ ..+.++++|||||+|+ .++.++ ...+..++..+
T Consensus 78 ~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l 146 (812)
T PRK11664 78 ETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGL 146 (812)
T ss_pred ceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC
Confidence 7888888776532 123689999999999999864 4578999999999997 344433 22345566777
Q ss_pred CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHH-HHHHHHHHHhhCCCCceEE
Q 003100 563 PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQ-ILHHLLKEHILGTPDYKVI 641 (848)
Q Consensus 563 ~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~-~L~~lL~~~~~~~~~~kiL 641 (848)
+++.|+|+||||++... +. .++.. ..++...+ ....++++|...+...++. .+...+...+. ...+.+|
T Consensus 147 r~~lqlilmSATl~~~~--l~-~~~~~-~~~I~~~g-----r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iL 216 (812)
T PRK11664 147 RDDLKLLIMSATLDNDR--LQ-QLLPD-APVIVSEG-----RSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLL 216 (812)
T ss_pred CccceEEEEecCCCHHH--HH-HhcCC-CCEEEecC-----ccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEE
Confidence 88999999999998752 33 34432 22333322 2234666666555444443 22333333332 2467999
Q ss_pred EEEecchHHHHHHHHHHH---hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCC--
Q 003100 642 VFCSTGMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP-- 716 (848)
Q Consensus 642 VF~~s~~~a~~l~~~L~~---~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~-- 716 (848)
|||+++.+++.+++.|.. .++.+..+||++++.+|..++..|++|+.+|||||+++++|||||+|++||++|++.
T Consensus 217 VFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 217 LFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred EEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 999999999999999987 478899999999999999999999999999999999999999999999999988764
Q ss_pred ----------------ChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 717 ----------------DREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 717 ----------------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
|.++|+||+|||||. .+|.||.|+++.+.
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999998 59999999997654
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.5e-38 Score=369.29 Aligned_cols=313 Identities=18% Similarity=0.207 Sum_probs=230.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHH---------HHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 404 RVQEATLSACLEGKDAVVKAKTGTGKSIA---------FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 404 ~iQ~~aI~~il~g~dvIv~a~TGSGKTla---------flLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
.+|+++++.+++|+++|++|+||||||.+ |++|.+..+..-.. ...+.+++|++|||+||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-----~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-----NFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-----ccCCcEEEEECcHHHHHHHHHHH
Confidence 47999999999999999999999999996 44444444321110 11234799999999999999999
Q ss_pred HHHHhhc--CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccch
Q 003100 475 AIALLKN--HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552 (848)
Q Consensus 475 l~~l~~~--~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~ 552 (848)
+.+.+++ ..+..+.+.+||... ........+.+|+|+|++.. ...+.++++|||||||++...+
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~--~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~-- 307 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD--ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG-- 307 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch--HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--
Confidence 9887754 346678888998762 22222223579999997631 1246789999999999998765
Q ss_pred hhHHHHHHhc-CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC----------hhhHH
Q 003100 553 KDVENIVDCL-PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP----------HELHF 621 (848)
Q Consensus 553 ~~l~~Il~~l-~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~----------~~~k~ 621 (848)
+.+..++..+ ++.+|+++||||++.++..+. .++.. +..+...+ .+...+++.++... ...+.
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~-p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~ 381 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRIK-EFFPN-PAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKK 381 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHHH-HHhcC-CcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHH
Confidence 4555666544 344699999999998888774 55553 33444322 12244555544221 11121
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHH-hcCCceEEEecCCcc
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEF-RASKRLILVTSDVSA 698 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F-~~G~~~VLVaTdvl~ 698 (848)
. +...+.... ...++.+||||+++.+++.+++.|.+. ++.+..+||++++. +++++.| ++|+.+|||||++++
T Consensus 382 ~-~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 382 N-IVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred H-HHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 2 222222211 123568999999999999999999887 68999999999974 5667777 689999999999999
Q ss_pred ccccCCCCCeeEEcC---CCC---------ChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 699 RGMDYPDVTSVVQVG---IPP---------DREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 699 rGlDip~V~~VI~yd---~P~---------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
||||||+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999 565 888999999999998 79999999998664
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.8e-36 Score=375.08 Aligned_cols=298 Identities=22% Similarity=0.235 Sum_probs=231.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|+ .|+++|..+++.++.|+|++++||||||||+ |.+|++..+... +.++|||+|||+||.|+++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~----------g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK----------GKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeccHHHHHHHHHHHH
Confidence 477 7999999999999999999999999999996 566665444321 3479999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcch-----hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccc---
Q 003100 477 ALLKNHDGIGVLTLVGGTRF-----KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD--- 548 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~-----~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~--- 548 (848)
.++... ++.+..++|+... ......+..+.++|+|+||++|.+++.. +....+++|||||||++++
T Consensus 145 ~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 145 KFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhccc
Confidence 998754 6777777776543 2223344556689999999999998862 3455699999999999996
Q ss_pred --------ccch-hhHHHHHHhcCc------------------------cceeEEEeccCChH-HHHHHHHHhccceEEE
Q 003100 549 --------LGFR-KDVENIVDCLPR------------------------RRQSLLFSATMPKE-VRRISQLVLKREHTYI 594 (848)
Q Consensus 549 --------~gf~-~~l~~Il~~l~~------------------------~~Q~ll~SATl~~~-v~~l~~~~l~~~~~~i 594 (848)
+||. +++..++..++. .+|+++||||+++. +.. .++... ..+
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~l-l~~ 294 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFREL-LGF 294 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhcc-ceE
Confidence 6785 678888877764 68999999999864 332 111111 112
Q ss_pred eecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchH---HHHHHHHHHHhccceeeecCCc
Q 003100 595 DTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV---TSLLYLLLREMKMNVREMYSRK 671 (848)
Q Consensus 595 ~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~---a~~l~~~L~~~~~~v~~lhg~l 671 (848)
.... . .....++.+.++.+. .+...+..++... +.++||||++... ++.+++.|+..|+.+..+||+|
T Consensus 295 ~v~~-~-~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 295 EVGS-P-VFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred EecC-c-ccccCCceEEEEEcc--cHHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 2211 1 123345666666554 5666677776542 3589999999888 9999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCceEEEe----cCCccccccCCC-CCeeEEcCCCC------ChhHHHHHhhccCC
Q 003100 672 PQLYRDRISEEFRASKRLILVT----SDVSARGMDYPD-VTSVVQVGIPP------DREQYIHRLGRTGR 730 (848)
Q Consensus 672 s~~~R~~i~~~F~~G~~~VLVa----Tdvl~rGlDip~-V~~VI~yd~P~------s~~~yiQRiGRaGR 730 (848)
.+.++.|++|+++|||| |++++||||+|+ |++|||||+|. ....|.||+||+-.
T Consensus 366 -----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 -----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 67889999999953
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.3e-36 Score=381.34 Aligned_cols=328 Identities=20% Similarity=0.221 Sum_probs=246.9
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 389 LTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 389 ~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
++.+.+++ .|| .|+++|+++++.+++|+|++++||||+|||++++++++.... .+.++|||+||++|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreL 134 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHH
Confidence 34556665 899 599999999999999999999999999999976766654321 12479999999999
Q ss_pred HHHHHHHHHHHhhcC-CCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 468 ASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 468 a~Qi~~~l~~l~~~~-~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
|.|+++.+..++... .++.+..++|+.....+. ..+..+.++|+|+||++|.+++... . ..++++||||||
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEA 209 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDV 209 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECc
Confidence 999999999987653 246677888888765443 3445566899999999998877542 1 267899999999
Q ss_pred ccccc-----------ccchhhHHH----HHH----------------------hcCccce-eEEEeccCChHHHHHHHH
Q 003100 544 DHLLD-----------LGFRKDVEN----IVD----------------------CLPRRRQ-SLLFSATMPKEVRRISQL 585 (848)
Q Consensus 544 H~ll~-----------~gf~~~l~~----Il~----------------------~l~~~~Q-~ll~SATl~~~v~~l~~~ 585 (848)
|+|++ +||.+++.. |+. .+++.+| ++++|||++..-. .. .
T Consensus 210 D~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~-~ 287 (1638)
T PRK14701 210 DAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-RV-K 287 (1638)
T ss_pred eeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-HH-H
Confidence 99986 588888864 432 2345556 5779999985311 11 1
Q ss_pred HhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchH---HHHHHHHHHHhcc
Q 003100 586 VLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMV---TSLLYLLLREMKM 662 (848)
Q Consensus 586 ~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~---a~~l~~~L~~~~~ 662 (848)
+++.. ..+.+ +.. .....++.+.++......+ ..+..++... +.++||||+|++. |+.++..|...|+
T Consensus 288 l~~~~-l~f~v-~~~-~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi 358 (1638)
T PRK14701 288 LYREL-LGFEV-GSG-RSALRNIVDVYLNPEKIIK-EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDGF 358 (1638)
T ss_pred HhhcC-eEEEe-cCC-CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCCC
Confidence 22222 22332 222 2233456677665555444 4566666542 3589999999876 5899999999999
Q ss_pred ceeeecCCcchhhHHHHHHHHhcCCceEEEec----CCccccccCCC-CCeeEEcCCCC---ChhHHHHHh---------
Q 003100 663 NVREMYSRKPQLYRDRISEEFRASKRLILVTS----DVSARGMDYPD-VTSVVQVGIPP---DREQYIHRL--------- 725 (848)
Q Consensus 663 ~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT----dvl~rGlDip~-V~~VI~yd~P~---s~~~yiQRi--------- 725 (848)
.+..+||+ |..+++.|++|++.||||| ++++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 359 ~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~ 433 (1638)
T PRK14701 359 KIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSE 433 (1638)
T ss_pred eEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHH
Confidence 99999995 8999999999999999999 58999999999 99999999999 888777765
Q ss_pred ----hccCCCCCCceEEEEeCcchhhHH
Q 003100 726 ----GRTGREGKEGEGVLLLAPWEEYFL 749 (848)
Q Consensus 726 ----GRaGR~G~~G~~i~l~~~~e~~~l 749 (848)
||+||.|..+.+++.+...+..++
T Consensus 434 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 434 ILKIEEELKEGIPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred HHHhhhhcccCCcchhHHHhHHHHHHHH
Confidence 999999988888765555554444
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.4e-35 Score=330.40 Aligned_cols=302 Identities=21% Similarity=0.224 Sum_probs=209.0
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
+++++||||||||++|++|++..+.... +.+++|++|+++|+.|+++.+..+++. .+..+.++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHH
Confidence 6899999999999999999998764321 237999999999999999999998643 233444433211
Q ss_pred ------------Hhhhhhhc-----CCCcEEEeChHHHHHHHHhc-cCcccccC--CccEEEEecccccccccchhhHHH
Q 003100 498 ------------VDQRRLES-----DPCQILVATPGRLLDHIENK-SGLSVRLM--GLKMLVLDEADHLLDLGFRKDVEN 557 (848)
Q Consensus 498 ------------~~~~~l~~-----~~~~IIV~TPgrLl~~L~~~-~~~~~~l~--~l~~lVIDEAH~ll~~gf~~~l~~ 557 (848)
........ ...+|+|+||++++..+... ......+. ..++|||||||.+.+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 00000001 12689999999998887652 11111111 23789999999999875443 666
Q ss_pred HHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC--ChhhHHHHHHHHHHHHhhC
Q 003100 558 IVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA--PHELHFQILHHLLKEHILG 634 (848)
Q Consensus 558 Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~--~~~~k~~~L~~lL~~~~~~ 634 (848)
++..++ ...|+++||||+|..+..+.......... ....... ......+.+..+ ....+...+..++...
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--- 219 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFN--EPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI--- 219 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccc--cCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh---
Confidence 666554 46899999999997776665543321100 0000000 000111222111 1123445555555432
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhcc--ceeeecCCcchhhHHHH----HHHHhcCCceEEEecCCccccccCCCCCe
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRI----SEEFRASKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~--~v~~lhg~ls~~~R~~i----~~~F~~G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
..++++||||+|++.++.++..|.+.+. .+..+||++++.+|.++ ++.|++|+..|||||+++++|+|++ +++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 2467999999999999999999988765 49999999999999764 8899999999999999999999995 899
Q ss_pred eEEcCCCCChhHHHHHhhccCCCCCC----ceEEEEeCc
Q 003100 709 VVQVGIPPDREQYIHRLGRTGREGKE----GEGVLLLAP 743 (848)
Q Consensus 709 VI~yd~P~s~~~yiQRiGRaGR~G~~----G~~i~l~~~ 743 (848)
||++..| ..+|+||+||+||.|+. |..+++...
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9998877 78999999999998854 255665543
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.1e-34 Score=331.92 Aligned_cols=323 Identities=20% Similarity=0.211 Sum_probs=245.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.. ||++|..+++.++.|+ |+.+.||+|||++|++|++..... +..++|++||++||.|.++++.
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 4654 8999999999999998 999999999999999999977543 2379999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc----------------------ccccC
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL----------------------SVRLM 533 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~----------------------~~~l~ 533 (848)
.++... ++.+.+++|+.+.. .+.. ..+++|+|+|..-| .++|..+... .....
T Consensus 166 ~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 166 PLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 998865 89999999997643 3332 23589999999887 5555443111 12235
Q ss_pred CccEEEEecccccc-ccc----------------------------------ch---------------hhHHHHH----
Q 003100 534 GLKMLVLDEADHLL-DLG----------------------------------FR---------------KDVENIV---- 559 (848)
Q Consensus 534 ~l~~lVIDEAH~ll-~~g----------------------------------f~---------------~~l~~Il---- 559 (848)
.+.+.||||||.++ |.. |. ..++.++
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 68899999999853 100 00 0000110
Q ss_pred --------------Hhc------Cc-------------------------------------------------------
Q 003100 560 --------------DCL------PR------------------------------------------------------- 564 (848)
Q Consensus 560 --------------~~l------~~------------------------------------------------------- 564 (848)
..+ .+
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 000 00
Q ss_pred ------cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCc
Q 003100 565 ------RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 565 ------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~ 638 (848)
..++.+||||++.....+...+.. ++..|..... ......+.++.++...|...+...+..... .+.
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l-~vv~IPt~kp----~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~ 474 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYGL-PVVRIPTNRP----SQRRHLPDEVFLTAAAKWAAVAARVRELHA--QGR 474 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHCC-CeEEeCCCCC----ccceecCCEEEeCHHHHHHHHHHHHHHHHh--cCC
Confidence 014567899998877777776654 3444433211 122244556667778888888888876432 345
Q ss_pred eEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCC---CCC-----eeE
Q 003100 639 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP---DVT-----SVV 710 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip---~V~-----~VI 710 (848)
++||||+|+..++.++..|...++.+..+||.+. +|+..+..|..+...|+|||++++||+||+ +|. +||
T Consensus 475 pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI 552 (656)
T PRK12898 475 PVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVI 552 (656)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEE
Confidence 7999999999999999999999999999999865 566666677777778999999999999999 776 999
Q ss_pred EcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 711 QVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 711 ~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 553 ~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 553 LTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred EcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999999999998764
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=318.65 Aligned_cols=342 Identities=23% Similarity=0.256 Sum_probs=278.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
...+++++++.+.+.|+..|++.+.|+|.-++.+ +++|.|.+|+++|+||||++.-++-+..++..+ -+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----------~K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG----------KK 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC----------Ce
Confidence 4578999999999999999999999999999975 678999999999999999998888888887643 26
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhh---hhhcCCCcEEEeChHHHHHHHHhccCcccccCC
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~ 534 (848)
.|+|+|..+||+|.++.|.+.... .++.+.+-+|-..++.... .-....+||||+|++.+-.+|... ..+.+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgd 338 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGD 338 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----Ccccc
Confidence 899999999999999999998854 4888888888877665432 122335899999999988777765 45789
Q ss_pred ccEEEEecccccccccchhhHHHHHH---hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecc
Q 003100 535 LKMLVLDEADHLLDLGFRKDVENIVD---CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQS 611 (848)
Q Consensus 535 l~~lVIDEAH~ll~~gf~~~l~~Il~---~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~ 611 (848)
+..|||||+|.+-+...+..+.-++. .+-+..|.|.+|||+.+.-+ ++..+..+... . ...|.++..+
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~-y-------~~RPVplErH 409 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVL-Y-------DERPVPLERH 409 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEe-e-------cCCCCChhHe
Confidence 99999999999988665555555544 45568999999999987654 44443322221 1 2367777777
Q ss_pred cccCC-hhhHHHHHHHHHHHHhhC----CCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC
Q 003100 612 CLVAP-HELHFQILHHLLKEHILG----TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 612 ~~~~~-~~~k~~~L~~lL~~~~~~----~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G 686 (848)
.+++. ...|...+..+.+..... ...+++|||++|+..|..++..|...|+.+.++|++|+..+|..+...|.++
T Consensus 410 lvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 410 LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred eeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC
Confidence 77776 667888887777654432 2356999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCCCCeeE---EcCCCC-ChhHHHHHhhccCCCC--CCceEEEEeCcc
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVV---QVGIPP-DREQYIHRLGRTGREG--KEGEGVLLLAPW 744 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI---~yd~P~-s~~~yiQRiGRaGR~G--~~G~~i~l~~~~ 744 (848)
.+.++|+|-+++.|+|||.-.+|+ -++.-| ++.+|.|+.|||||.+ ..|++++++.|.
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999999999866554 234443 8999999999999988 368999988764
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=312.88 Aligned_cols=278 Identities=28% Similarity=0.415 Sum_probs=214.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcC--CCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 455 PIYVLILCPTRELASQIAAEAIALLKNH--DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 455 ~~~vLIL~PTreLa~Qi~~~l~~l~~~~--~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.+.+||+-|.|+||.|.++.+.++-... |.++..+++||.....+...+. .+.+|+|+||+||.+.+... .+.+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~-~g~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLK-DGTHIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhh-cCceeeecCchhhhhhhhcc---ceee
Confidence 3789999999999999999877764432 4456668888887776666665 45899999999999999876 5678
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCc------cceeEEEeccCCh-HHHHHHHHHhccceEEEeecCCCccccc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPR------RRQSLLFSATMPK-EVRRISQLVLKREHTYIDTVGLGSVETP 605 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~------~~Q~ll~SATl~~-~v~~l~~~~l~~~~~~i~~~~~~~~~~~ 605 (848)
..+.++|+||||.++..++.+.+..+...+|. ..|.+++|||+.. ++..+....++. +.+++..+... .+
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhf-ptwVdLkgeD~--vp 438 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHF-PTWVDLKGEDL--VP 438 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccC-ceeEecccccc--cc
Confidence 89999999999999999998888888887764 5799999999853 444455555543 33443322211 11
Q ss_pred ceeecccccCC----------------------------------hhhHH-----HHHHHHHHHHhhCCCCceEEEEEec
Q 003100 606 VKIKQSCLVAP----------------------------------HELHF-----QILHHLLKEHILGTPDYKVIVFCST 646 (848)
Q Consensus 606 ~~v~q~~~~~~----------------------------------~~~k~-----~~L~~lL~~~~~~~~~~kiLVF~~s 646 (848)
..+.+....+. ..... ++....++++ ...++||||.|
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h----~mdkaiifcrt 514 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH----AMDKAIIFCRT 514 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh----ccCceEEEEec
Confidence 11111111100 01111 1112222322 34589999999
Q ss_pred chHHHHHHHHHHHhc---cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHH
Q 003100 647 GMVTSLLYLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH 723 (848)
Q Consensus 647 ~~~a~~l~~~L~~~~---~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQ 723 (848)
+.+|+.|.+++.+.+ +++.++||+..+.+|...++.|+.+++++|||||+++||+||.++-++||..+|.+...|+|
T Consensus 515 k~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvh 594 (725)
T KOG0349|consen 515 KQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVH 594 (725)
T ss_pred cccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhh
Confidence 999999999998874 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCceEEEEeCc
Q 003100 724 RLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 724 RiGRaGR~G~~G~~i~l~~~ 743 (848)
||||.||+.+-|.+|.++..
T Consensus 595 rigrvgraermglaislvat 614 (725)
T KOG0349|consen 595 RIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhccchhhhcceeEEEeec
Confidence 99999999999999988865
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=346.58 Aligned_cols=346 Identities=24% Similarity=0.326 Sum_probs=268.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH
Q 003100 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (848)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre 466 (848)
...+..++.+.|+..|+.+|.+|+..+.+|+||||+.+||||||++|++|+++++++.... ++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechhh
Confidence 4445788889999999999999999999999999999999999999999999999987543 6899999999
Q ss_pred HHHHHHHHHHHHhhcCC-CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHH-HHhccCcccccCCccEEEEeccc
Q 003100 467 LASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH-IENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 467 La~Qi~~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~-L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
||+.+.+++.++....+ ++.+..++|++.-.. .+.+..++++||++||.||..+ |.+...+...++++++||+||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~-r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEE-RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHH-HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 99999999999998876 578888888887653 3356677899999999999884 44445556667889999999999
Q ss_pred ccccccchhhHHHHHHh-------cCccceeEEEeccCChHHHHHHHHHhccceEE-EeecCCCcccccceeecccccCC
Q 003100 545 HLLDLGFRKDVENIVDC-------LPRRRQSLLFSATMPKEVRRISQLVLKREHTY-IDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~-------l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~-i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
.+-.. |+..+..++.. .+...|+|+.|||+.+.-+ ++..+...+... ++..+.. ...+..+...+
T Consensus 206 tYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~~-----~~~~~~~~~~p 278 (851)
T COG1205 206 TYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGSP-----RGLRYFVRREP 278 (851)
T ss_pred ecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCCC-----CCceEEEEeCC
Confidence 87543 56665555443 3457899999999987665 444444444444 3322221 11222222222
Q ss_pred ---------hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHH----HHHHHhc----cceeeecCCcchhhHHHH
Q 003100 617 ---------HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLY----LLLREMK----MNVREMYSRKPQLYRDRI 679 (848)
Q Consensus 617 ---------~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~----~~L~~~~----~~v~~lhg~ls~~~R~~i 679 (848)
.......+..++...+. .+.++|||+.++..++.++ ..+...+ ..+..+++++...+|.++
T Consensus 279 ~~~~~~~~~r~s~~~~~~~~~~~~~~--~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~i 356 (851)
T COG1205 279 PIRELAESIRRSALAELATLAALLVR--NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRI 356 (851)
T ss_pred cchhhhhhcccchHHHHHHHHHHHHH--cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHH
Confidence 11333334444433332 4679999999999999997 4444444 568999999999999999
Q ss_pred HHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCC-ChhHHHHHhhccCCCCCCceEEEEeC--cchhhHHHH
Q 003100 680 SEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLA--PWEEYFLDD 751 (848)
Q Consensus 680 ~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~l~~--~~e~~~l~~ 751 (848)
...|+.|+..++++|++++-|+||.+++.||.++.|. +..+++||+||+||.++.+..++++. +.+.+|+..
T Consensus 357 e~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 357 EAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred HHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhC
Confidence 9999999999999999999999999999999999999 89999999999999997777666665 345566543
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4e-34 Score=333.24 Aligned_cols=312 Identities=15% Similarity=0.141 Sum_probs=223.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
...|+++|.++++.++.++++++++|||+|||+++.. +...+.... ..++|||+||++|+.|+.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999997543 222222221 126999999999999999999987
Q ss_pred hhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
+.. +...+..+.+|.... ...+|+|+||++|.+.... .+.++++||+||||++... .+..+
T Consensus 182 ~~~-~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~------~~~~~~~iIvDEaH~~~~~----~~~~i 242 (501)
T PHA02558 182 RLF-PREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKE------WFDQFGMVIVDECHLFTGK----SLTSI 242 (501)
T ss_pred ccc-cccceeEEecCcccC--------CCCCEEEeeHHHHhhchhh------hccccCEEEEEchhcccch----hHHHH
Confidence 643 234455566665432 2369999999999764421 3568999999999998764 45667
Q ss_pred HHhcCccceeEEEeccCChHHHHHHH--HHhccceEEEeec------------------CCCccccc----ceeec-ccc
Q 003100 559 VDCLPRRRQSLLFSATMPKEVRRISQ--LVLKREHTYIDTV------------------GLGSVETP----VKIKQ-SCL 613 (848)
Q Consensus 559 l~~l~~~~Q~ll~SATl~~~v~~l~~--~~l~~~~~~i~~~------------------~~~~~~~~----~~v~q-~~~ 613 (848)
+..+++.+++++||||+......... ..+......+... ........ ..... ...
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 77777778999999999754321111 1111100001000 00000000 00000 001
Q ss_pred cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEe
Q 003100 614 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT 693 (848)
Q Consensus 614 ~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa 693 (848)
......+...+..++.... ..+.++||||.+.++++.+++.|...+.++..+||++++.+|..+++.|++|...||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 1222334444555544432 24568999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEe
Q 003100 694 S-DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 741 (848)
Q Consensus 694 T-dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~ 741 (848)
| +++++|+|+|++++||++.++.+...|+||+||++|.+..+...+++
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 8 89999999999999999999999999999999999987655444444
No 65
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-34 Score=304.07 Aligned_cols=335 Identities=19% Similarity=0.206 Sum_probs=250.6
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 389 LTIKALTA-AGYIQM-TRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 389 ~l~~~L~~-~g~~~~-t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
.+.++|++ +|+.++ ++.|++|+..+.. .+||.|++|||+||+|||+||+|-+ . + ..||+.|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~----------g-ITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G----------G-ITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C----------C-eEEEehHHH
Confidence 46677775 587765 7999999998876 5699999999999999999999722 1 1 689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhc--CCCcEEEeChHHHH-----HHHHhccCcccccCCc
Q 003100 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLES--DPCQILVATPGRLL-----DHIENKSGLSVRLMGL 535 (848)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~--~~~~IIV~TPgrLl-----~~L~~~~~~~~~l~~l 535 (848)
+|...+.+-+.++ .+.+..+....+..+.. ..+.. -...|++.||++.. .+|+. ..+-..+
T Consensus 72 ALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L 142 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVL 142 (641)
T ss_pred HHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----Hhhhcee
Confidence 9998887777665 34444444443333222 22222 23678999999753 22322 1333568
Q ss_pred cEEEEeccccccccc--chhhHHHHHHh--cCccceeEEEeccCChHHHHHH--HHHhccceEEEeecCCCcccccceee
Q 003100 536 KMLVLDEADHLLDLG--FRKDVENIVDC--LPRRRQSLLFSATMPKEVRRIS--QLVLKREHTYIDTVGLGSVETPVKIK 609 (848)
Q Consensus 536 ~~lVIDEAH~ll~~g--f~~~l~~Il~~--l~~~~Q~ll~SATl~~~v~~l~--~~~l~~~~~~i~~~~~~~~~~~~~v~ 609 (848)
.++|+||||++..|| |++++..+-.. .-.....+.+|||.+..+++-+ +..+++|..++.+. .--.
T Consensus 143 ~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP--------~FR~ 214 (641)
T KOG0352|consen 143 RYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP--------TFRD 214 (641)
T ss_pred eeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc--------chhh
Confidence 999999999999998 99999887443 3356788999999999988754 34455554444321 1111
Q ss_pred cccccC----ChhhHHHHHHHHHHHHhh---------CCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhH
Q 003100 610 QSCLVA----PHELHFQILHHLLKEHIL---------GTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYR 676 (848)
Q Consensus 610 q~~~~~----~~~~k~~~L~~lL~~~~~---------~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R 676 (848)
..++-+ .-.+-+..|..+-...+. +...+-.||||.|++.|+.++-.|...|+++..+|+++...+|
T Consensus 215 NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ER 294 (641)
T KOG0352|consen 215 NLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKER 294 (641)
T ss_pred hhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchh
Confidence 111111 112333444444333221 1123467999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 677 DRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 677 ~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
..+.+.|.++++.||+||..+++|+|-|+|++|||+++|.+.+-|.|..|||||.|....|-++++..|..-++.|-.
T Consensus 295 TeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 295 TEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776665543
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.7e-33 Score=303.18 Aligned_cols=328 Identities=22% Similarity=0.241 Sum_probs=241.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
...++.||......++.+ +++|+.|||-|||+.+++-+...+...+ + ++|+++||+-|+.|.++.|.+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHHH
Confidence 446888999888877765 9999999999999998887777765432 3 7999999999999999999998
Q ss_pred hhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
++- +.-.+..++|..+.......+.. .+|+|+||+.+..-|..+ .+++.++.+||+||||+-...--...+.+-
T Consensus 82 ~~i-p~~~i~~ltGev~p~~R~~~w~~--~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 82 TGI-PEDEIAALTGEVRPEEREELWAK--KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred hCC-ChhheeeecCCCChHHHHHHHhh--CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHH
Confidence 854 34567889998887655555443 589999999998877766 578899999999999997643222222232
Q ss_pred HHhcCccceeEEEeccCChHHHHHHHHHhc--c--------------------ceEEEeec-------------------
Q 003100 559 VDCLPRRRQSLLFSATMPKEVRRISQLVLK--R--------------------EHTYIDTV------------------- 597 (848)
Q Consensus 559 l~~l~~~~Q~ll~SATl~~~v~~l~~~~l~--~--------------------~~~~i~~~------------------- 597 (848)
...-.+++.++++|||+..+...+....-+ - ...++.+.
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 233346778999999975443332221100 0 00000000
Q ss_pred -------CCCccccc-----------------ce--------------------------------eecccc--------
Q 003100 598 -------GLGSVETP-----------------VK--------------------------------IKQSCL-------- 613 (848)
Q Consensus 598 -------~~~~~~~~-----------------~~--------------------------------v~q~~~-------- 613 (848)
+......+ .. +.+++.
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 00000000 00 000000
Q ss_pred ---------------------------cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcccee-
Q 003100 614 ---------------------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR- 665 (848)
Q Consensus 614 ---------------------------~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~- 665 (848)
......|+..+..++.+++....+.++|||++.+.+++.+.+.|...+..+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 0001124455667777777777788999999999999999999999887764
Q ss_pred e--------ecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceE
Q 003100 666 E--------MYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG 737 (848)
Q Consensus 666 ~--------lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~ 737 (848)
. ...+|+|.++..+++.|+.|.+.|||||++++.|+|||.|++||.|++..|...++||.|||||. +.|.+
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 2 23579999999999999999999999999999999999999999999999999999999999995 79999
Q ss_pred EEEeCcc
Q 003100 738 VLLLAPW 744 (848)
Q Consensus 738 i~l~~~~ 744 (848)
++|++..
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9999875
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=336.23 Aligned_cols=335 Identities=21% Similarity=0.265 Sum_probs=254.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcC
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il-~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~P 463 (848)
.+.+.+.+.++..|+..+++.|+.++...+ +++|++||+|||||||+.+++.+++.+.+.+ .++|||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~----------~k~vYivP 84 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG----------GKVVYIVP 84 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC----------CcEEEEeC
Confidence 367788888888899889988888886554 5699999999999999999999999988752 37999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 464 TreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
+|+||.++++++.++-.. |++|...+|+...... .+ ..++|||+||+.+-..+.+... .+..+++|||||+
T Consensus 85 lkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~~--~l--~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEi 155 (766)
T COG1204 85 LKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDDE--RL--ARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEI 155 (766)
T ss_pred hHHHHHHHHHHhhhHHhc--CCEEEEecCCcccchh--hh--ccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeee
Confidence 999999999999944332 8999999999876532 22 3489999999999888877643 4678999999999
Q ss_pred cccccccchhhHHHHHHhcCc---cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh--
Q 003100 544 DHLLDLGFRKDVENIVDCLPR---RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE-- 618 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~~l~~---~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~-- 618 (848)
|.+.+...++.++.|+..++. ..|++.+|||+|+.. .++.++-.+.. ...........+....+.+......
T Consensus 156 H~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~--~~~~rp~~l~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 156 HLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLV--ESDWRPVPLRRGVPYVGAFLGADGKKK 232 (766)
T ss_pred eecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCccc--ccCCCCcccccCCccceEEEEecCccc
Confidence 999988777888888776554 379999999999854 45655433222 1111111111222222222222211
Q ss_pred ----hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----------------------------------
Q 003100 619 ----LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---------------------------------- 660 (848)
Q Consensus 619 ----~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~---------------------------------- 660 (848)
.....+..++...+ ..++++||||+|++.+...+..|...
T Consensus 233 ~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 TWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 12233333333333 35789999999999999998888731
Q ss_pred ---ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeE----EcC-----CCCChhHHHHHhhcc
Q 003100 661 ---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVG-----IPPDREQYIHRLGRT 728 (848)
Q Consensus 661 ---~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI----~yd-----~P~s~~~yiQRiGRa 728 (848)
...+..||++++..+|..+.+.|+.|.++||+||.+++.|+|+|.-++|| -|+ .+.++.+|+|++|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 12578999999999999999999999999999999999999999977777 466 566889999999999
Q ss_pred CCCC--CCceEEEEeCc
Q 003100 729 GREG--KEGEGVLLLAP 743 (848)
Q Consensus 729 GR~G--~~G~~i~l~~~ 743 (848)
||.| ..|.++++...
T Consensus 391 GRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 391 GRPGYDDYGEAIILATS 407 (766)
T ss_pred CCCCcCCCCcEEEEecC
Confidence 9988 45788888743
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-33 Score=343.86 Aligned_cols=304 Identities=22% Similarity=0.264 Sum_probs=212.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH----HHHHHHHHHHHHHh
Q 003100 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR----ELASQIAAEAIALL 479 (848)
Q Consensus 404 ~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr----eLa~Qi~~~l~~l~ 479 (848)
.+..+.+..+.+++.+||+|+||||||+ ++|.+ ++...... ...+++..|.| +||.++++++...+
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~--lle~g~g~------~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLELGRGV------KGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHH--HHHcCCCC------CCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3445666777788889999999999999 68865 33322110 11455667864 66666665554432
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc-ccccccchhh-HHH
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VEN 557 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH-~ll~~gf~~~-l~~ 557 (848)
+-.|++-+...+ .. ...++|+|+|||+|++++..+ ..+.++++||||||| ++++.+|... +..
T Consensus 147 ----G~~VGY~vrf~~---~~----s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~ 211 (1294)
T PRK11131 147 ----GGCVGYKVRFND---QV----SDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKE 211 (1294)
T ss_pred ----cceeceeecCcc---cc----CCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHH
Confidence 222333222111 11 235799999999999999865 347899999999999 5788887653 333
Q ss_pred HHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh------hhHHHHHHHHHHHH
Q 003100 558 IVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH------ELHFQILHHLLKEH 631 (848)
Q Consensus 558 Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~------~~k~~~L~~lL~~~ 631 (848)
++.. .++.|+|+||||++. ..+.+.+...+ ++.+.+. ...+.+.|..... ...+..+...+...
T Consensus 212 lL~~-rpdlKvILmSATid~--e~fs~~F~~ap--vI~V~Gr-----~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l 281 (1294)
T PRK11131 212 LLPR-RPDLKVIITSATIDP--ERFSRHFNNAP--IIEVSGR-----TYPVEVRYRPIVEEADDTERDQLQAIFDAVDEL 281 (1294)
T ss_pred hhhc-CCCceEEEeeCCCCH--HHHHHHcCCCC--EEEEcCc-----cccceEEEeecccccchhhHHHHHHHHHHHHHH
Confidence 3322 246899999999975 35666655433 3433321 1234444443322 12233333333332
Q ss_pred hhCCCCceEEEEEecchHHHHHHHHHHHhccc---eeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCe
Q 003100 632 ILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN---VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 632 ~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~---v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
. ....+.+||||++..+++.+++.|...++. +..+||++++.+|.++++. .|..+|||||+++++|||||+|++
T Consensus 282 ~-~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~y 358 (1294)
T PRK11131 282 G-REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKY 358 (1294)
T ss_pred h-cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceE
Confidence 2 345678999999999999999999987654 7899999999999999886 578999999999999999999999
Q ss_pred eEEcCC---------------C---CChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 709 VVQVGI---------------P---PDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 709 VI~yd~---------------P---~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
||++|. | .|.++|+||+|||||. .+|.||.|+++.+.
T Consensus 359 VID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 359 VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred EEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 999873 3 4668999999999998 68999999997653
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.3e-33 Score=347.10 Aligned_cols=293 Identities=22% Similarity=0.278 Sum_probs=217.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 389 LTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 389 ~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
++.+.+.+.....|+++|+.+++.++.|+|++++||||||||+ |.+|++..+... +.++|||+|||+||
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa 134 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHH
Confidence 3445555544457999999999999999999999999999997 677777665432 34799999999999
Q ss_pred HHHHHHHHHHhhcCCCce---EEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEec
Q 003100 469 SQIAAEAIALLKNHDGIG---VLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542 (848)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~---v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDE 542 (848)
.|+++.+..++... ++. +.+++|+.+.... ...+..++++|||+||++|.+++... .. ++++|||||
T Consensus 135 ~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDE 207 (1171)
T TIGR01054 135 IQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDD 207 (1171)
T ss_pred HHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeC
Confidence 99999999998653 333 3356788765543 23445566999999999999887642 11 789999999
Q ss_pred cccccc-----------ccchhh-HHHHH----------------------HhcCccce--eEEEecc-CChHHHHHHHH
Q 003100 543 ADHLLD-----------LGFRKD-VENIV----------------------DCLPRRRQ--SLLFSAT-MPKEVRRISQL 585 (848)
Q Consensus 543 AH~ll~-----------~gf~~~-l~~Il----------------------~~l~~~~Q--~ll~SAT-l~~~v~~l~~~ 585 (848)
||+|++ +||.++ +..++ ..+++.+| +++|||| .|..+.. .
T Consensus 208 aD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~ 284 (1171)
T TIGR01054 208 VDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---K 284 (1171)
T ss_pred hHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---H
Confidence 999998 688764 45543 23455555 5678999 5655432 1
Q ss_pred HhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecc---hHHHHHHHHHHHhcc
Q 003100 586 VLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTG---MVTSLLYLLLREMKM 662 (848)
Q Consensus 586 ~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~---~~a~~l~~~L~~~~~ 662 (848)
++.. ...+.... ......++.+.++.... +...+..++... +.++||||+++ +.|+.++..|...|+
T Consensus 285 l~r~-ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~ 354 (1171)
T TIGR01054 285 LFRE-LLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGV 354 (1171)
T ss_pred Hccc-ccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCc
Confidence 2221 22222211 12234456666654433 234555666542 35899999999 999999999999999
Q ss_pred ceeeecCCcchhhHHHHHHHHhcCCceEEEe----cCCccccccCCC-CCeeEEcCCCC
Q 003100 663 NVREMYSRKPQLYRDRISEEFRASKRLILVT----SDVSARGMDYPD-VTSVVQVGIPP 716 (848)
Q Consensus 663 ~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa----Tdvl~rGlDip~-V~~VI~yd~P~ 716 (848)
.+..+||++++ .+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 355 ~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 355 KAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred eEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999973 7899999999999999 599999999999 89999999995
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7e-33 Score=328.74 Aligned_cols=322 Identities=18% Similarity=0.203 Sum_probs=236.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++...+.+ ..++|++||++||.|.++++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 476 69999999999988886 9999999999999999998665532 369999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhcc---CcccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKS---GLSVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~---~~~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++... ++.+++++|+.+...+.+.. ..++|+|+||++| .++|.... .....+..+.++||||||.++ |..
T Consensus 141 ~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 141 QVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 999875 89999999998843333332 3489999999999 56555431 112346789999999999964 110
Q ss_pred --------------chhhHHHHHHhcC-----------------------------------------------------
Q 003100 551 --------------FRKDVENIVDCLP----------------------------------------------------- 563 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~----------------------------------------------------- 563 (848)
+...+..++..+.
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 0111111111110
Q ss_pred ---cc-------------------------------------------------------------ceeEEEeccCChHH
Q 003100 564 ---RR-------------------------------------------------------------RQSLLFSATMPKEV 579 (848)
Q Consensus 564 ---~~-------------------------------------------------------------~Q~ll~SATl~~~v 579 (848)
++ ..+.+||.|...+-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 00 12345555554333
Q ss_pred HHHHHHHhccceEEEeecCCCccccccee--ecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHH
Q 003100 580 RRISQLVLKREHTYIDTVGLGSVETPVKI--KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 657 (848)
Q Consensus 580 ~~l~~~~l~~~~~~i~~~~~~~~~~~~~v--~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L 657 (848)
..+...+ +-+...|.+. .|... ....+......|...+...+.... ..+.++||||+|+..++.++..|
T Consensus 378 ~e~~~~Y-~l~v~~IPt~------kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L 448 (790)
T PRK09200 378 KEFFEVY-NMEVVQIPTN------RPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLL 448 (790)
T ss_pred HHHHHHh-CCcEEECCCC------CCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHH
Confidence 3333332 1122222111 11111 112344566778888888876643 24679999999999999999999
Q ss_pred HHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccC---CCCC-----eeEEcCCCCChhHHHHHhhccC
Q 003100 658 REMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDY---PDVT-----SVVQVGIPPDREQYIHRLGRTG 729 (848)
Q Consensus 658 ~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDi---p~V~-----~VI~yd~P~s~~~yiQRiGRaG 729 (848)
.+.++++..+||.+.+.++..+...+..| .|+|||++++||+|| |+|. +||+|++|.+...|+||+||||
T Consensus 449 ~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtG 526 (790)
T PRK09200 449 DEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSG 526 (790)
T ss_pred HHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhcccc
Confidence 99999999999999988887777776665 799999999999999 7999 9999999999999999999999
Q ss_pred CCCCCceEEEEeCcchh
Q 003100 730 REGKEGEGVLLLAPWEE 746 (848)
Q Consensus 730 R~G~~G~~i~l~~~~e~ 746 (848)
|.|.+|.+++|++..|.
T Consensus 527 R~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 527 RQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCCCeeEEEEEcchHH
Confidence 99999999999998664
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-33 Score=337.94 Aligned_cols=336 Identities=21% Similarity=0.237 Sum_probs=255.4
Q ss_pred HHHH-HHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 390 TIKA-LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 390 l~~~-L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
+... ...+|+..+++.|.++|..++.|+|++|.+|||.||++||+||++ +. +...|||.|..+|+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~------------~gitvVISPL~SLm 317 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LL------------GGVTVVISPLISLM 317 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--cc------------CCceEEeccHHHHH
Confidence 3344 346899999999999999999999999999999999999999997 22 12689999999998
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeCCcchh---HhhhhhhcC--CCcEEEeChHHHHHHHHhccCcccccCC---ccEEEE
Q 003100 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLESD--PCQILVATPGRLLDHIENKSGLSVRLMG---LKMLVL 540 (848)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~---~~~~~l~~~--~~~IIV~TPgrLl~~L~~~~~~~~~l~~---l~~lVI 540 (848)
..+...+.. .+|....+.++.... .....+..+ .++|++.||+++...-.-. .....+.. +.++||
T Consensus 318 ~DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 318 QDQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEe
Confidence 877655522 267777777776553 233444455 6899999999885422111 00122333 889999
Q ss_pred eccccccccc--chhhHHHHHHhcC--ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 541 DEADHLLDLG--FRKDVENIVDCLP--RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 541 DEAH~ll~~g--f~~~l~~Il~~l~--~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
||||++..|| |++.+..+..... +...+|.+|||.+..++.-+-..++-....+..... ...++...+....
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf----nR~NL~yeV~~k~ 467 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF----NRPNLKYEVSPKT 467 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC----CCCCceEEEEecc
Confidence 9999999998 9999888754332 347899999999988877655554432222211111 1112222222222
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
.......+...+.. ..+...+||||.++.+|+.+...|+..++.+..||++|+..+|..+...|..+++.|+|||=+
T Consensus 468 ~~~~~~~~~~~~~~---~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVA 544 (941)
T KOG0351|consen 468 DKDALLDILEESKL---RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVA 544 (941)
T ss_pred CccchHHHHHHhhh---cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEee
Confidence 12222222333333 246779999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
+++|||.|+|+.||||++|.+.+.|+|-+|||||.|....|++|+...|..-++.+
T Consensus 545 FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 545 FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886555544
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.4e-32 Score=334.06 Aligned_cols=328 Identities=23% Similarity=0.275 Sum_probs=237.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
+...++++|.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3446899999999988877 99999999999999999988877631 123799999999999999999998
Q ss_pred HhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHH
Q 003100 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (848)
Q Consensus 478 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~ 557 (848)
++... ...+..++|+....... .+.. .++|+|+||+.+...+... ...+.++++|||||||++........+..
T Consensus 81 ~~~~~-~~~v~~~~g~~~~~~r~-~~~~-~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 81 FLNIP-EEKIVVFTGEVSPEKRA-ELWE-KAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred HhCCC-CceEEEEeCCCCHHHHH-HHHh-CCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHH
Confidence 87432 34677788877654322 2222 3699999999998777554 35577899999999999875433333333
Q ss_pred HHHhcCccceeEEEeccCChHHHH---HHHHHhcc-------------------ceEEEeec------------------
Q 003100 558 IVDCLPRRRQSLLFSATMPKEVRR---ISQLVLKR-------------------EHTYIDTV------------------ 597 (848)
Q Consensus 558 Il~~l~~~~Q~ll~SATl~~~v~~---l~~~~l~~-------------------~~~~i~~~------------------ 597 (848)
.+....+..++++||||+...... +...+... ...++...
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 343444567799999997432221 11111000 00000000
Q ss_pred ------CCCcccccc-------------eeecc-----------------------------------------------
Q 003100 598 ------GLGSVETPV-------------KIKQS----------------------------------------------- 611 (848)
Q Consensus 598 ------~~~~~~~~~-------------~v~q~----------------------------------------------- 611 (848)
......... .+...
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 000000000 00000
Q ss_pred -------------------------cccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceee
Q 003100 612 -------------------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVRE 666 (848)
Q Consensus 612 -------------------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~ 666 (848)
........|...|..+|.+.+...++.++||||+++..|..+++.|...++.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 0001112355566666766654457789999999999999999999999999999
Q ss_pred ecCC--------cchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEE
Q 003100 667 MYSR--------KPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGV 738 (848)
Q Consensus 667 lhg~--------ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i 738 (848)
+||. +++.+|..++..|++|...|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.++
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~ 473 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVV 473 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEE
Confidence 9986 89999999999999999999999999999999999999999999999999999999999976 58888
Q ss_pred EEeCc
Q 003100 739 LLLAP 743 (848)
Q Consensus 739 ~l~~~ 743 (848)
+++..
T Consensus 474 ~l~~~ 478 (773)
T PRK13766 474 VLIAK 478 (773)
T ss_pred EEEeC
Confidence 88875
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.6e-32 Score=318.86 Aligned_cols=320 Identities=16% Similarity=0.167 Sum_probs=222.7
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
++|+|.+++..+..++..|+.++||+|||++|++|++.+.+.. ..++|++|+++||.|+++++..++..
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 4555555555544455579999999999999999987665532 25899999999999999999999877
Q ss_pred CCCceEEEEeCCcc---hhHhhhhhhcCCCcEEEeChHHH-HHHHHhc---cCcccccCCccEEEEeccccccccc----
Q 003100 482 HDGIGVLTLVGGTR---FKVDQRRLESDPCQILVATPGRL-LDHIENK---SGLSVRLMGLKMLVLDEADHLLDLG---- 550 (848)
Q Consensus 482 ~~~i~v~~l~gg~~---~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~---~~~~~~l~~l~~lVIDEAH~ll~~g---- 550 (848)
. ++.+.+++++.. ......... .+++|+|+||++| .++|... ......+..+.++||||||.|+-..
T Consensus 138 L-GLsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 138 L-GLTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred c-CCcEEEEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 5 888888777622 222222222 4589999999999 5665432 1112346789999999999974211
Q ss_pred ------------chhhHHHHHHhcCcc-----------------------------------------------------
Q 003100 551 ------------FRKDVENIVDCLPRR----------------------------------------------------- 565 (848)
Q Consensus 551 ------------f~~~l~~Il~~l~~~----------------------------------------------------- 565 (848)
+...+..++..+...
T Consensus 216 liisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~ 295 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLF 295 (762)
T ss_pred eeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHH
Confidence 111122222222211
Q ss_pred ----------------------------------------------------------------ceeEEEeccCChHHHH
Q 003100 566 ----------------------------------------------------------------RQSLLFSATMPKEVRR 581 (848)
Q Consensus 566 ----------------------------------------------------------------~Q~ll~SATl~~~v~~ 581 (848)
.++.+||.|...+-.+
T Consensus 296 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~E 375 (762)
T TIGR03714 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKE 375 (762)
T ss_pred hcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHH
Confidence 0123333333222222
Q ss_pred HHHHHhccceEEEeecCCCcccccce--eecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Q 003100 582 ISQLVLKREHTYIDTVGLGSVETPVK--IKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 582 l~~~~l~~~~~~i~~~~~~~~~~~~~--v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
+...+ +-+...|.+. .|.. -....+......|...+...+..... .+.++||||+|+..++.+...|.+
T Consensus 376 f~~iY-~l~v~~IPt~------kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~ 446 (762)
T TIGR03714 376 FIETY-SLSVVKIPTN------KPIIRIDYPDKIYATLPEKLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLR 446 (762)
T ss_pred HHHHh-CCCEEEcCCC------CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHH
Confidence 22221 1111111100 0110 11123445667788888887776432 467999999999999999999999
Q ss_pred hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCC---------CCCeeEEcCCCCChhHHHHHhhccCC
Q 003100 660 MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP---------DVTSVVQVGIPPDREQYIHRLGRTGR 730 (848)
Q Consensus 660 ~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip---------~V~~VI~yd~P~s~~~yiQRiGRaGR 730 (848)
.++++..+||.+.+.++..+...|+.| .|+|||++++||+||| ++.+|++|++|....+ +||+|||||
T Consensus 447 ~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGR 523 (762)
T TIGR03714 447 EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGR 523 (762)
T ss_pred CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccC
Confidence 999999999999988887777666666 7999999999999999 9999999999988777 999999999
Q ss_pred CCCCceEEEEeCcchh
Q 003100 731 EGKEGEGVLLLAPWEE 746 (848)
Q Consensus 731 ~G~~G~~i~l~~~~e~ 746 (848)
.|.+|.+++|++..|.
T Consensus 524 qG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 524 QGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCceeEEEEEccchh
Confidence 9999999999998764
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-32 Score=307.90 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=205.7
Q ss_pred HHHHHHHHHhCCCC--EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 003100 405 VQEATLSACLEGKD--AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (848)
Q Consensus 405 iQ~~aI~~il~g~d--vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~ 482 (848)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..+++|++|+++|+.|+++.+..++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999874 7899999999999999998731 1158999999999999999999987533
Q ss_pred ---CCceEEEEeCCcchh--Hh-----------------hhhhhcCCCcEEEeChHHHHHHHHhc---cC--cccccCCc
Q 003100 483 ---DGIGVLTLVGGTRFK--VD-----------------QRRLESDPCQILVATPGRLLDHIENK---SG--LSVRLMGL 535 (848)
Q Consensus 483 ---~~i~v~~l~gg~~~~--~~-----------------~~~l~~~~~~IIV~TPgrLl~~L~~~---~~--~~~~l~~l 535 (848)
.+..+..+.|.+... .. ........+.|+++||+.|..++... .. ....+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 245566666652211 00 01111235789999999997665432 11 11125789
Q ss_pred cEEEEecccccccccc-----hhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH--hccceEEEeecCCCc-------
Q 003100 536 KMLVLDEADHLLDLGF-----RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV--LKREHTYIDTVGLGS------- 601 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf-----~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~--l~~~~~~i~~~~~~~------- 601 (848)
++|||||+|.+..++. .-....++.......+++++|||+++.+....... +..+...+.......
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhh
Confidence 9999999999875431 12333444444445799999999999877666544 222222222110000
Q ss_pred --cc------ccceeecccccCChhhHHHH---HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc--cceeeec
Q 003100 602 --VE------TPVKIKQSCLVAPHELHFQI---LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--MNVREMY 668 (848)
Q Consensus 602 --~~------~~~~v~q~~~~~~~~~k~~~---L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~--~~v~~lh 668 (848)
.. ....+.+.+.. ....+... +...+.+.+...+++++||||+|+..++.++..|+..+ +.+..+|
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred ccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 00 00123333332 22223332 33333333333456799999999999999999999864 5788999
Q ss_pred CCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccC
Q 003100 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTG 729 (848)
Q Consensus 669 g~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaG 729 (848)
|.+++.+|.++ ++..|||||++++||||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 306 g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 306 GFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999988754 478999999999999999987 666 45 899999999999997
No 75
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=307.48 Aligned_cols=316 Identities=17% Similarity=0.207 Sum_probs=238.8
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..+|. |-.+|++||-++..|..|+|.|+|.+|||+++-.++.-. .++ +.+++|.+|-++|.+|-++.|
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h----------~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKH----------MTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hhh----------ccceEecchhhhhccchHHHH
Confidence 34555 889999999999999999999999999999854443211 111 247999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhH
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l 555 (848)
+.-+.. +.+++|+..+..+ +.++|+|.+.|..+|.+.. -.++++++||+||+|.+.|...+-.|
T Consensus 361 k~tF~D-----vgLlTGDvqinPe--------AsCLIMTTEILRsMLYrga---dliRDvE~VIFDEVHYiND~eRGvVW 424 (1248)
T KOG0947|consen 361 KETFGD-----VGLLTGDVQINPE--------ASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYINDVERGVVW 424 (1248)
T ss_pred HHhccc-----cceeecceeeCCC--------cceEeehHHHHHHHHhccc---chhhccceEEEeeeeecccccccccc
Confidence 987653 4489999887542 7899999999999999884 33678999999999999999999999
Q ss_pred HHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh------------------
Q 003100 556 ENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH------------------ 617 (848)
Q Consensus 556 ~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~------------------ 617 (848)
++++-++|++.++|++|||+|+.++ |+.+..+.....|.++.. ...|.++.+++.....
T Consensus 425 EEViIMlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST--~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~ 501 (1248)
T KOG0947|consen 425 EEVIIMLPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVIST--SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKD 501 (1248)
T ss_pred eeeeeeccccceEEEEeccCCChHH-HHHHhhhccCceEEEEec--CCCccceEEEEEeccceehhhcccchhhhhcchh
Confidence 9999999999999999999999875 666665443333333221 1223333322211100
Q ss_pred ---------------------------------------------hhHH--HHHHHHHHHHhhCCCCceEEEEEecchHH
Q 003100 618 ---------------------------------------------ELHF--QILHHLLKEHILGTPDYKVIVFCSTGMVT 650 (848)
Q Consensus 618 ---------------------------------------------~~k~--~~L~~lL~~~~~~~~~~kiLVF~~s~~~a 650 (848)
..+. .....++. ++.+..--++||||-+++.|
T Consensus 502 a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin-~L~k~~lLP~VvFvFSkkrC 580 (1248)
T KOG0947|consen 502 AKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN-HLRKKNLLPVVVFVFSKKRC 580 (1248)
T ss_pred hhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHH-HHhhcccCceEEEEEccccH
Confidence 0011 01222222 22333445899999999999
Q ss_pred HHHHHHHHHhc---------------------------------------cceeeecCCcchhhHHHHHHHHhcCCceEE
Q 003100 651 SLLYLLLREMK---------------------------------------MNVREMYSRKPQLYRDRISEEFRASKRLIL 691 (848)
Q Consensus 651 ~~l~~~L~~~~---------------------------------------~~v~~lhg~ls~~~R~~i~~~F~~G~~~VL 691 (848)
+..+++|.... -.++++||++-+.-++-+...|..|-++||
T Consensus 581 de~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVL 660 (1248)
T KOG0947|consen 581 DEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVL 660 (1248)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEE
Confidence 99999987531 258899999999999999999999999999
Q ss_pred EecCCccccccCCCCCeeEEcC--------CCCChhHHHHHhhccCCCCC--CceEEEEeCc
Q 003100 692 VTSDVSARGMDYPDVTSVVQVG--------IPPDREQYIHRLGRTGREGK--EGEGVLLLAP 743 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd--------~P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~ 743 (848)
+||.++++|||+|.-++|+.-= .--.+-+|+|++|||||.|- .|.+++++..
T Consensus 661 FATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 661 FATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 9999999999999877776311 11367899999999999994 5777776654
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-31 Score=312.92 Aligned_cols=324 Identities=19% Similarity=0.190 Sum_probs=239.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
+|.. |+++|..+...++.|+ |+.++||+|||++|++|++-..+.+ ..|+|++||++||.|.++++.
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHH
Confidence 4554 8899999888887776 9999999999999999996444432 148999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEeccccccc-ccc
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLLD-LGF 551 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll~-~gf 551 (848)
.++... ++.+.+++|+.+.......+ .++|+|+||++| .++|...... ...++.+.++||||+|.++- ...
T Consensus 119 ~l~~~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 119 QVYRFL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHhccC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 999875 89999999998865433333 379999999999 8888765211 24568899999999999642 100
Q ss_pred ---------------h--------------------------------hhHHHHH------------------HhcC---
Q 003100 552 ---------------R--------------------------------KDVENIV------------------DCLP--- 563 (848)
Q Consensus 552 ---------------~--------------------------------~~l~~Il------------------~~l~--- 563 (848)
. ..++.++ ..+.
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 0 0011100 0000
Q ss_pred ---cc-------------------------------------------------------------ceeEEEeccCChHH
Q 003100 564 ---RR-------------------------------------------------------------RQSLLFSATMPKEV 579 (848)
Q Consensus 564 ---~~-------------------------------------------------------------~Q~ll~SATl~~~v 579 (848)
++ ..+.+||.|...+.
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 00 13355666665544
Q ss_pred HHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Q 003100 580 RRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 580 ~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
..+...+. -+...|.+.. ... ..-....+......|+..+...+.... ..+.++||||+|+..++.+...|.+
T Consensus 355 ~E~~~iY~-l~vv~IPtnk---p~~-R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~ 427 (745)
T TIGR00963 355 EEFEKIYN-LEVVVVPTNR---PVI-RKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKE 427 (745)
T ss_pred HHHHHHhC-CCEEEeCCCC---Cee-eeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 44444432 1222222111 000 001112233445567777766665443 2467999999999999999999999
Q ss_pred hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCC-------CCeeEEcCCCCChhHHHHHhhccCCCC
Q 003100 660 MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD-------VTSVVQVGIPPDREQYIHRLGRTGREG 732 (848)
Q Consensus 660 ~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~-------V~~VI~yd~P~s~~~yiQRiGRaGR~G 732 (848)
.++++..+|+. +.+|+..+..|+.+...|+|||++++||+||+. .-+||+++.|.+...|.|++|||||.|
T Consensus 428 ~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 428 RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG 505 (745)
T ss_pred cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC
Confidence 99999999999 889999999999999999999999999999998 559999999999999999999999999
Q ss_pred CCceEEEEeCcchhh
Q 003100 733 KEGEGVLLLAPWEEY 747 (848)
Q Consensus 733 ~~G~~i~l~~~~e~~ 747 (848)
.+|.+..|++..|.-
T Consensus 506 ~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 506 DPGSSRFFLSLEDNL 520 (745)
T ss_pred CCcceEEEEeccHHH
Confidence 999999999987753
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-32 Score=332.23 Aligned_cols=305 Identities=19% Similarity=0.213 Sum_probs=222.4
Q ss_pred HHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCce
Q 003100 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486 (848)
Q Consensus 407 ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~ 486 (848)
.+.+..+.+++.+||+|+||||||+ ++|.+ ++..... ...+++++.|.|-.|..++..+.+.++...|-.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~--lle~~~~------~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKI--CLELGRG------SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHH--HHHcCCC------CCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 4566677778889999999999999 67866 3333211 112677889999999999988888875433444
Q ss_pred EEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc-ccccccchhh-HHHHHHhcCc
Q 003100 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIVDCLPR 564 (848)
Q Consensus 487 v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH-~ll~~gf~~~-l~~Il~~l~~ 564 (848)
|++.+...+.. +..+.|+|+|+|+|++.+..+ ..+.++++||||||| +.++.+|.-. +..++.. .+
T Consensus 143 VGY~vR~~~~~-------s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rp 210 (1283)
T TIGR01967 143 VGYKVRFHDQV-------SSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RP 210 (1283)
T ss_pred EeeEEcCCccc-------CCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CC
Confidence 44433222211 234789999999999999875 347899999999999 5888887654 4555443 45
Q ss_pred cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh------hhHHHHHHHHHHHHhhCCCCc
Q 003100 565 RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH------ELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 565 ~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~------~~k~~~L~~lL~~~~~~~~~~ 638 (848)
+.|+|+||||+.. ..+.+.+...+ ++.+.+. ...+...|..... ......+...+...+. ...+
T Consensus 211 dLKlIlmSATld~--~~fa~~F~~ap--vI~V~Gr-----~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~G 280 (1283)
T TIGR01967 211 DLKIIITSATIDP--ERFSRHFNNAP--IIEVSGR-----TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPG 280 (1283)
T ss_pred CCeEEEEeCCcCH--HHHHHHhcCCC--EEEECCC-----cccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCC
Confidence 7899999999974 45666665433 3433321 1223333332211 1234445555554433 2457
Q ss_pred eEEEEEecchHHHHHHHHHHHhc---cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP 715 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~~---~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P 715 (848)
.+|||+++..+++.+++.|...+ +.+..+||+|++.+|.+++..+ +..+|||||+++++|||||+|++||++|++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 99999999999999999998764 4588999999999999986654 347999999999999999999999999954
Q ss_pred ------------------CChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 716 ------------------PDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 716 ------------------~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
.|.++|.||+|||||.+ +|.||.|++..+.
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999998 9999999987653
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=6.3e-31 Score=305.39 Aligned_cols=338 Identities=19% Similarity=0.257 Sum_probs=252.6
Q ss_pred HcCCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
-++|..+..+|..++|.+.. +.|+|||||||||||..|+|.||+.+.+.. ..........+++||+|+++||..+++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHH
Confidence 46788899999999998876 679999999999999999999998887632 2233345678999999999999999998
Q ss_pred HHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc-CcccccCCccEEEEecccccccccchh
Q 003100 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS-GLSVRLMGLKMLVLDEADHLLDLGFRK 553 (848)
Q Consensus 475 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~-~~~~~l~~l~~lVIDEAH~ll~~gf~~ 553 (848)
+.+-+... |+.|..++|+....... +. .++|||+||+.+ +.+.+.+ +....+..+++|||||+|.|.+. .++
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGp 256 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE--IA--DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGP 256 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH--HH--hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccc
Confidence 88877654 89999999999876544 22 289999999985 4444432 22334577999999999998876 688
Q ss_pred hHHHHHHhcC-------ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh---hHH--
Q 003100 554 DVENIVDCLP-------RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE---LHF-- 621 (848)
Q Consensus 554 ~l~~Il~~l~-------~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~---~k~-- 621 (848)
.++.|+.... ...+++++|||+|+- ..++.++--+++. ..-.......|..+.+.++-.... ...
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~--glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~ 333 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYA--GLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKN 333 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCcc--ceeeecccccccceeeeEEeeecccchhhhhh
Confidence 8888876543 357899999999984 3455544332111 111123344666777776654433 111
Q ss_pred --HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc-----------------------cceeeecCCcchhhH
Q 003100 622 --QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-----------------------MNVREMYSRKPQLYR 676 (848)
Q Consensus 622 --~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~-----------------------~~v~~lhg~ls~~~R 676 (848)
...+.-+.+.+ ..+++++|||.++..+...++.|.+.. ..+..+|++|...+|
T Consensus 334 ~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 334 IDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred HHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 12222223332 257899999999999999998887641 357899999999999
Q ss_pred HHHHHHHhcCCceEEEecCCccccccCCCCCeeE----EcCCCC------ChhHHHHHhhccCCCC--CCceEEEEeCcc
Q 003100 677 DRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVGIPP------DREQYIHRLGRTGREG--KEGEGVLLLAPW 744 (848)
Q Consensus 677 ~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI----~yd~P~------s~~~yiQRiGRaGR~G--~~G~~i~l~~~~ 744 (848)
.-+...|..|.++||+||..++.|+|+|+--++| .||... +.-+.+|..|||||.. ..|.++++.+..
T Consensus 412 ~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9999999999999999999999999999866555 344433 5678899999999964 678888877664
Q ss_pred hh
Q 003100 745 EE 746 (848)
Q Consensus 745 e~ 746 (848)
-.
T Consensus 492 kl 493 (1230)
T KOG0952|consen 492 KL 493 (1230)
T ss_pred HH
Confidence 43
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=4.3e-31 Score=276.91 Aligned_cols=341 Identities=19% Similarity=0.277 Sum_probs=264.0
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEE
Q 003100 382 DECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (848)
Q Consensus 382 ~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLI 460 (848)
++++.+.+..+.|+. +..++++|.|..+|.+.+.|.++++..|||.||++||+||++-. . ..+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---d-----------g~alv 139 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---D-----------GFALV 139 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---C-----------CceEe
Confidence 567788888888874 67789999999999999999999999999999999999999721 1 25899
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhh--hcCCCcEEEeChHHHHHH--HHhccCcccccC
Q 003100 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRL--ESDPCQILVATPGRLLDH--IENKSGLSVRLM 533 (848)
Q Consensus 461 L~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l--~~~~~~IIV~TPgrLl~~--L~~~~~~~~~l~ 533 (848)
++|...|+..+.-.++.+ ++....+....+..... ..+ +.....+++.||+.+..- +.+.-...+...
T Consensus 140 i~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred echhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998877777776 55555555544433211 111 123478999999988532 222211123345
Q ss_pred CccEEEEeccccccccc--chhhHHH--HHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceee
Q 003100 534 GLKMLVLDEADHLLDLG--FRKDVEN--IVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIK 609 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g--f~~~l~~--Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~ 609 (848)
.+.+|.|||+|+...|| |++++.. |+...-+...+|.++||.++.+..-++..+.-...+.-..+.......+.+.
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~ 294 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVR 294 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEee
Confidence 68899999999999998 8887764 4666667889999999999988777666654333333233333333334444
Q ss_pred cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCce
Q 003100 610 QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 689 (848)
Q Consensus 610 q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~ 689 (848)
|. ....++..+-+..+++..+ .+...||||-++++|+.+...|+..|+++..+|+.|.+.++.-+-+.|..|++.
T Consensus 295 qk--p~n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq 369 (695)
T KOG0353|consen 295 QK--PGNEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ 369 (695)
T ss_pred eC--CCChHHHHHHHHHHhcccc---CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE
Confidence 33 2234455566666666544 334679999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCCCCCeeEEcCCCCChhHHHH-------------------------------------------Hhh
Q 003100 690 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIH-------------------------------------------RLG 726 (848)
Q Consensus 690 VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQ-------------------------------------------RiG 726 (848)
|+|||-++++|||-|+|++|||..+|.+++.|.| ..|
T Consensus 370 vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesg 449 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESG 449 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcc
Confidence 9999999999999999999999999999999999 789
Q ss_pred ccCCCCCCceEEEEeCcchh
Q 003100 727 RTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 727 RaGR~G~~G~~i~l~~~~e~ 746 (848)
|+||.+.+..|++++.-.|.
T Consensus 450 ragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 450 RAGRDDMKADCILYYGFADI 469 (695)
T ss_pred ccccCCCcccEEEEechHHH
Confidence 99999999999999876554
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=299.67 Aligned_cols=331 Identities=19% Similarity=0.243 Sum_probs=234.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.....++.||.+.+..+| |+++||++|||+|||++++.-+++++.... ..++|+++||+-|+.|+...+.
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHHh
Confidence 345569999999998888 999999999999999998888888775432 2489999999999999996666
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-chhhH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKDV 555 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-f~~~l 555 (848)
.++.. ..+....||.........+.. ..+|+|+||+.|...|.+.... .|+.+.++||||||+-.... +...+
T Consensus 128 ~~~~~---~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 128 IYLIP---YSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred hccCc---ccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhccccccc--ccceEEEEEEcccccccccccHHHHH
Confidence 66532 445555555333322222322 3699999999999988776322 27889999999999977544 44444
Q ss_pred HHHHHhcCccceeEEEeccCChHHHHHHHHHhccceE--------------------EEee-c-----------------
Q 003100 556 ENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHT--------------------YIDT-V----------------- 597 (848)
Q Consensus 556 ~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~--------------------~i~~-~----------------- 597 (848)
...+..-....|+|++|||+.............-... .+.+ .
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 4555544444599999999976554433322110000 0000 0
Q ss_pred --------------CCC--ccc----------ccceeecc--c-------------------------------------
Q 003100 598 --------------GLG--SVE----------TPVKIKQS--C------------------------------------- 612 (848)
Q Consensus 598 --------------~~~--~~~----------~~~~v~q~--~------------------------------------- 612 (848)
... ... ....-.+. +
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 000 000 00000000 0
Q ss_pred -------------------------ccC--ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---cc
Q 003100 613 -------------------------LVA--PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KM 662 (848)
Q Consensus 613 -------------------------~~~--~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~---~~ 662 (848)
... ....++..+..+|.+++...++.++||||.++..|..+...|.+. ++
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 000 012345566667777777778889999999999999999999842 22
Q ss_pred ceeeec--------CCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCC
Q 003100 663 NVREMY--------SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE 734 (848)
Q Consensus 663 ~v~~lh--------g~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~ 734 (848)
....+- .+|+|.++..+++.|++|.+.|||||++++.||||+.|++||-||...++...+||.|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 222222 47999999999999999999999999999999999999999999999999999999999 996 47
Q ss_pred ceEEEEeCcch
Q 003100 735 GEGVLLLAPWE 745 (848)
Q Consensus 735 G~~i~l~~~~e 745 (848)
|.|+++++..+
T Consensus 520 s~~vll~t~~~ 530 (746)
T KOG0354|consen 520 SKCVLLTTGSE 530 (746)
T ss_pred CeEEEEEcchh
Confidence 99999998544
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=7.4e-29 Score=297.14 Aligned_cols=321 Identities=19% Similarity=0.205 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g---~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
.|++.|++++..+.++ +++++.|+||||||.+|+.++.+.+..+ .++|||+||++|+.|+++.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 5899999999999874 7899999999999999988776665432 2699999999999999999988
Q ss_pred HhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc---
Q 003100 478 LLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF--- 551 (848)
Q Consensus 478 l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf--- 551 (848)
.+ +..+..++|+....... ..+..+.++|+|+|++.+. ..+.++++|||||+|....++.
T Consensus 213 ~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p 278 (679)
T PRK05580 213 RF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGP 278 (679)
T ss_pred Hh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCC
Confidence 65 45688888887654333 3344566899999998763 3467899999999998654321
Q ss_pred hhhHHH--HHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCC-cccccceeeccccc-----CChhhHHHH
Q 003100 552 RKDVEN--IVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLG-SVETPVKIKQSCLV-----APHELHFQI 623 (848)
Q Consensus 552 ~~~l~~--Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~-~~~~~~~v~q~~~~-----~~~~~k~~~ 623 (848)
.-+... ++.....+.|++++|||++.+....+.. .....+...... ....+ .+...... .........
T Consensus 279 ~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~---g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 279 RYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQ---GRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred CCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc---cceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHH
Confidence 111222 2334456789999999987654433321 112222111100 00000 00000000 000001133
Q ss_pred HHHHHHHHhhCCCCceEEEEEecc--------------------------------------------------------
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTG-------------------------------------------------------- 647 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~-------------------------------------------------------- 647 (848)
+...+.+.+. .+.++|||+|.+
T Consensus 355 l~~~i~~~l~--~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l 432 (679)
T PRK05580 355 LLEAIKQRLE--RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDL 432 (679)
T ss_pred HHHHHHHHHH--cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCee
Confidence 4444444442 355788887641
Q ss_pred ----hHHHHHHHHHHHh--ccceeeecCCcch--hhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcC--CCCC
Q 003100 648 ----MVTSLLYLLLREM--KMNVREMYSRKPQ--LYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG--IPPD 717 (848)
Q Consensus 648 ----~~a~~l~~~L~~~--~~~v~~lhg~ls~--~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd--~P~s 717 (848)
..++.+.+.|.+. +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.++ .+.+
T Consensus 433 ~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 433 VPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 1345677777765 6789999999874 5689999999999999999999999999999999996554 4432
Q ss_pred ----------hhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 718 ----------REQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 718 ----------~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
.+.|+|++||+||.+..|.+++.....+...++.+
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 36799999999999999999988766555555444
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.9e-29 Score=295.44 Aligned_cols=310 Identities=19% Similarity=0.232 Sum_probs=210.2
Q ss_pred CCCcHHHHHHHHHHhC-C--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLE-G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~-g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
..|+++|.+++..++. + +..++++|||+|||++.+. ++..+. -++|||||+.+|+.||.+++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~-aa~~l~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVT-AACTVK-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHH-HHHHhC-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 3589999999998874 3 3789999999999998553 333321 148999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC-----cccccCCccEEEEecccccccccc
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-----LSVRLMGLKMLVLDEADHLLDLGF 551 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~-----~~~~l~~l~~lVIDEAH~ll~~gf 551 (848)
+++.. +...+..++|+.... . .....|+|+|+.++.....+... ..+.-..+++||+||||++....
T Consensus 320 ~~~~l-~~~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~- 391 (732)
T TIGR00603 320 MWSTI-DDSQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM- 391 (732)
T ss_pred HhcCC-CCceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH-
Confidence 88643 234566666654321 1 12368999999987532211100 01222468899999999986543
Q ss_pred hhhHHHHHHhcCccceeEEEeccCChHHHHH--HHHHhccceEE-Ee---ecCCCcccccce-----------e------
Q 003100 552 RKDVENIVDCLPRRRQSLLFSATMPKEVRRI--SQLVLKREHTY-ID---TVGLGSVETPVK-----------I------ 608 (848)
Q Consensus 552 ~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l--~~~~l~~~~~~-i~---~~~~~~~~~~~~-----------v------ 608 (848)
+..++..+.. ...+++|||+..+.... ...++. +..+ .. ....+.. .+.. .
T Consensus 392 ---fr~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~L-A~~~~~ev~v~~t~~~~~~yl~ 465 (732)
T TIGR00603 392 ---FRRVLTIVQA-HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFI-ANVQCAEVWCPMTPEFYREYLR 465 (732)
T ss_pred ---HHHHHHhcCc-CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCcc-ccceEEEEEecCCHHHHHHHHH
Confidence 4445555533 34699999986432211 112221 1111 00 0000000 0000 0
Q ss_pred ----ecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHh
Q 003100 609 ----KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR 684 (848)
Q Consensus 609 ----~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~ 684 (848)
....+......|+..+..++..+- ..+.++||||.+...+..++..|. +..+||.+++.+|..+++.|+
T Consensus 466 ~~~~~k~~l~~~np~K~~~~~~Li~~he--~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 466 ENSRKRMLLYVMNPNKFRACQFLIRFHE--QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hcchhhhHHhhhChHHHHHHHHHHHHHh--hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 000111223345566666665542 356799999999988888887762 567999999999999999999
Q ss_pred cC-CceEEEecCCccccccCCCCCeeEEcCCC-CChhHHHHHhhccCCCCCCceE-------EEEeCcc
Q 003100 685 AS-KRLILVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEG-------VLLLAPW 744 (848)
Q Consensus 685 ~G-~~~VLVaTdvl~rGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~-------i~l~~~~ 744 (848)
.| .+.+||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|+++.
T Consensus 539 ~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 539 HNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred hCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 75 78999999999999999999999999998 5999999999999999876665 7788764
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=285.87 Aligned_cols=358 Identities=22% Similarity=0.305 Sum_probs=263.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
++..-..++ .|+..+.++|..+..+.+.+ .++++|||||+|||...++-+|+.+-.+......-...+.+++|++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444444 57778999999999998876 489999999999999999999999876654333333445689999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 465 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
++|++.+...|.+.+..+ ++.|.-.+|+......+. .+.+|+||||+.. +.+.+..+-.....-++++||||.|
T Consensus 374 KaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHHHHHHHHHHhhcccc-CcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999999999888776 899999999977554332 2379999999984 5666554333334457899999999
Q ss_pred ccccccchhhHHHHHHhcC-------ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 545 HLLDLGFRKDVENIVDCLP-------RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~-------~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
.+-|. .++.++.|+.... ..+.++++|||+|+-. ..+.++...+.-.. -......|.++.|.++-+..
T Consensus 448 LLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf---~fd~syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 448 LLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLF---YFDSSYRPVPLKQQYIGITE 522 (1674)
T ss_pred hcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCccccc---ccCcccCcCCccceEecccc
Confidence 88765 5777777766443 2578999999999853 23333222221111 12345678889998887655
Q ss_pred hh---HHHHH----HHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh------------------------------
Q 003100 618 EL---HFQIL----HHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------------ 660 (848)
Q Consensus 618 ~~---k~~~L----~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~------------------------------ 660 (848)
.. +++.. +.-+.++ ....++|||+.+++++...++.++..
T Consensus 523 k~~~~~~qamNe~~yeKVm~~---agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn 599 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEH---AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKN 599 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHh---CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccC
Confidence 33 33333 3333333 23479999999999988887777621
Q ss_pred -------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeE----EcCC------CCChhHHHH
Q 003100 661 -------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV----QVGI------PPDREQYIH 723 (848)
Q Consensus 661 -------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI----~yd~------P~s~~~yiQ 723 (848)
.+.++.+|++|+..+|..+.+.|+.|.++|||+|-.+++|+|+|+-+++| .|++ +.++.+-.|
T Consensus 600 ~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~q 679 (1674)
T KOG0951|consen 600 PDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQ 679 (1674)
T ss_pred hhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHH
Confidence 35789999999999999999999999999999999999999999988777 4554 458899999
Q ss_pred HhhccCCCC--CCceEEEEeCcchhhHHHHh--ccCCCCc
Q 003100 724 RLGRTGREG--KEGEGVLLLAPWEEYFLDDL--KDLPLDK 759 (848)
Q Consensus 724 RiGRaGR~G--~~G~~i~l~~~~e~~~l~~L--~~~~l~~ 759 (848)
|.|||||.+ ..|.++++-...|..+.-.+ ++++++.
T Consensus 680 mlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 680 MLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred HHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 999999976 35677766666664333332 3455544
No 84
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.9e-28 Score=275.34 Aligned_cols=330 Identities=19% Similarity=0.179 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
.-++++.++-..+-+ ....++++++|..+.-|||||.||||||+ ++|.+ |++++........+|+ +=|..|+
T Consensus 243 ~R~~EIQ~sR~~LPI---~aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gm-IGITqPR 314 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPI---VAEEQRIMEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGM-IGITQPR 314 (1172)
T ss_pred cCcHHHHHHHhcCch---hHHHHHHHHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccCCCCCe-eeecCch
Confidence 445555555443322 23345788889899999999999999999 78866 8998877665555554 4589999
Q ss_pred HHHHHHHHHHHHHHhhcC-CCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 465 RELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 465 reLa~Qi~~~l~~l~~~~-~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
|..|..++.++...+..+ ..+...+-+.++.. ....|.++|.|.|++.|+++ +.|..+++||||||
T Consensus 315 RVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~---------e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEA 381 (1172)
T KOG0926|consen 315 RVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIG---------EDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEA 381 (1172)
T ss_pred HHHHHHHHHHHHHHhccCccceeEEEEeccccC---------CCceeEEecchHHHHHHHHh----HhhhhceeEEechh
Confidence 999999998887776553 23444444544432 23689999999999999987 67899999999999
Q ss_pred cccccccchhhHHHHHH-------hcCc------cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeec
Q 003100 544 DHLLDLGFRKDVENIVD-------CLPR------RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQ 610 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~-------~l~~------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q 610 (848)
|.-.-. .+.+.-++. ...+ ..++|+||||+.-....-.+.++..++++|.+.. ...++..
T Consensus 382 HERSvn--TDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA-----RQfPVsI 454 (1172)
T KOG0926|consen 382 HERSVN--TDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA-----RQFPVSI 454 (1172)
T ss_pred hhccch--HHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec-----ccCceEE
Confidence 985321 222222222 1222 4578999999965544333445555555655422 3334444
Q ss_pred ccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh------------------------------
Q 003100 611 SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------------ 660 (848)
Q Consensus 611 ~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~------------------------------ 660 (848)
+|......+.+.-.+.-....+..-|.+.||||+..++++..|+..|++.
T Consensus 455 HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~ 534 (1172)
T KOG0926|consen 455 HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDS 534 (1172)
T ss_pred EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccC
Confidence 44444444444433333334455568999999999999999999988751
Q ss_pred ---------------------------------------------------------------------ccceeeecCCc
Q 003100 661 ---------------------------------------------------------------------KMNVREMYSRK 671 (848)
Q Consensus 661 ---------------------------------------------------------------------~~~v~~lhg~l 671 (848)
.+.|..+++-+
T Consensus 535 ~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLL 614 (1172)
T KOG0926|consen 535 NKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLL 614 (1172)
T ss_pred cccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhc
Confidence 01378899999
Q ss_pred chhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCC--------C----------ChhHHHHHhhccCCCCC
Q 003100 672 PQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP--------P----------DREQYIHRLGRTGREGK 733 (848)
Q Consensus 672 s~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P--------~----------s~~~yiQRiGRaGR~G~ 733 (848)
+..++.++++.-..|..-++|||+|++..+.||+|++||..+.- . |.++--||+|||||.|
T Consensus 615 s~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg- 693 (1172)
T KOG0926|consen 615 STEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG- 693 (1172)
T ss_pred CHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-
Confidence 99999999999999999999999999999999999999976643 2 4455679999999988
Q ss_pred CceEEEEeCc
Q 003100 734 EGEGVLLLAP 743 (848)
Q Consensus 734 ~G~~i~l~~~ 743 (848)
+|+||.||+.
T Consensus 694 pGHcYRLYSS 703 (1172)
T KOG0926|consen 694 PGHCYRLYSS 703 (1172)
T ss_pred CCceeehhhh
Confidence 8999999986
No 85
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.6e-28 Score=268.54 Aligned_cols=326 Identities=18% Similarity=0.226 Sum_probs=249.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
......+++-.+.+.++..++.+||.|.||||||. +||.+ |++++.... +.++-+..|+|..|..++.++.
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGytk~-----gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYTKG-----GKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhcccccC-----CceEeecCcchHHHHHHHHHHH
Confidence 34556788889999999999999999999999999 77765 777765432 3357899999999999999988
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
+.++...|-.|++-+--.+.. +...-|-++|.|+|++.+... ..|.++++|||||||.-.-. .+.+.
T Consensus 332 ~EMgvkLG~eVGYsIRFEdcT-------SekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~--TDILf 398 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDCT-------SEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLH--TDILF 398 (902)
T ss_pred HHhCcccccccceEEEecccc-------CcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhh--hhHHH
Confidence 887655555555544322222 223578899999999988776 56889999999999974321 22222
Q ss_pred HH---HHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhh
Q 003100 557 NI---VDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHIL 633 (848)
Q Consensus 557 ~I---l~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~ 633 (848)
.+ +...+++.++++.|||+..+ .|...+-..+. +.+.+ ...++..+|...+..+.++....-+.+.+.
T Consensus 399 gLvKDIar~RpdLKllIsSAT~DAe--kFS~fFDdapI--F~iPG-----RRyPVdi~Yt~~PEAdYldAai~tVlqIH~ 469 (902)
T KOG0923|consen 399 GLVKDIARFRPDLKLLISSATMDAE--KFSAFFDDAPI--FRIPG-----RRYPVDIFYTKAPEADYLDAAIVTVLQIHL 469 (902)
T ss_pred HHHHHHHhhCCcceEEeeccccCHH--HHHHhccCCcE--EeccC-----cccceeeecccCCchhHHHHHHhhheeeEe
Confidence 23 23445788999999999654 45544443332 22222 455677788888887878777777777777
Q ss_pred CCCCceEEEEEecchHHHHHHHHHHHh---------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCC
Q 003100 634 GTPDYKVIVFCSTGMVTSLLYLLLREM---------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP 704 (848)
Q Consensus 634 ~~~~~kiLVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip 704 (848)
.++.+-||||...+++.+.....|.+. .+-++++|+.++...+.++++.-..|-.+|++||++++..|.|+
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeec
Confidence 778899999999999988877777553 35689999999999999999999999999999999999999999
Q ss_pred CCCeeEEcCC------------------CCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhccCC
Q 003100 705 DVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKDLP 756 (848)
Q Consensus 705 ~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~~~ 756 (848)
+|.+||.-++ |.|.++-.||+|||||.| +|+|+.|++.+. |.++|+..+
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a--Y~~eLE~~t 616 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA--YEHELEEMT 616 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh--hhhhhccCC
Confidence 9999996553 457888999999999988 899999999764 444555443
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=6.9e-27 Score=282.43 Aligned_cols=319 Identities=20% Similarity=0.224 Sum_probs=204.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
...|+|+|+.+......+.-+|+.||||+|||.++++.+. .+...... .+++|.+||+++++|++.++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~~--------~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGLA--------DSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCCC--------CeEEEECcHHHHHHHHHHHHHHH
Confidence 3479999998865544566789999999999999766554 44432211 26899999999999999999876
Q ss_pred hhc-CCCceEEEEeCCcchhHhhhh--------------------hhc------CCCcEEEeChHHHHHHHHhccCcccc
Q 003100 479 LKN-HDGIGVLTLVGGTRFKVDQRR--------------------LES------DPCQILVATPGRLLDHIENKSGLSVR 531 (848)
Q Consensus 479 ~~~-~~~i~v~~l~gg~~~~~~~~~--------------------l~~------~~~~IIV~TPgrLl~~L~~~~~~~~~ 531 (848)
+.. +....+.++.|.......... ... --..|+|||...++..+...+.....
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 542 223456666665542211100 000 11689999999887544332111111
Q ss_pred cC--CccEEEEecccccccccchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccc--------eEEEeecCCC
Q 003100 532 LM--GLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKRE--------HTYIDTVGLG 600 (848)
Q Consensus 532 l~--~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~--------~~~i~~~~~~ 600 (848)
.- .-++|||||+|.+-.. ....+..++..+. ....+|+||||+|..........+... ++.+......
T Consensus 435 ~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred HHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 10 1358999999987432 3344555555443 356799999999987764332211110 1111100000
Q ss_pred c--------c----cccceeecccccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc---cce
Q 003100 601 S--------V----ETPVKIKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK---MNV 664 (848)
Q Consensus 601 ~--------~----~~~~~v~q~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~---~~v 664 (848)
. . .....+......... ......+..++.. . ..++++||||||++.+..+++.|++.+ ..+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~-~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAA-A--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHH-H--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 0 0 000011000000010 1112222233322 2 246789999999999999999999764 679
Q ss_pred eeecCCcchhhHH----HHHHHH-hcCC---ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCC
Q 003100 665 REMYSRKPQLYRD----RISEEF-RASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK 733 (848)
Q Consensus 665 ~~lhg~ls~~~R~----~i~~~F-~~G~---~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~ 733 (848)
..+||.+++.+|. ++++.| ++|+ ..|||||+++++|||| ++++||....| .+.|+||+||+||.+.
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999994 567788 6666 4799999999999999 68999998888 6899999999999875
No 87
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=268.21 Aligned_cols=312 Identities=20% Similarity=0.223 Sum_probs=239.9
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
.+.+-.+.+..+..++.+||.|+||||||+ ++|.+ |++.+.... | ++.|..|+|..|..++.++....+.
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~~-----g-~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFASS-----G-KIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccccC-----C-cEEeecCchHHHHHHHHHHHHHhCC
Confidence 344556778888889999999999999999 67755 777765432 2 4789999999999999999988877
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHh
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC 561 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~ 561 (848)
..|-.|++.+--.+.. +....|.++|.|+|++.+..+ -.|+++++|||||||.-.-. .+.+.-+++.
T Consensus 122 ~lG~~VGY~IRFed~t-------s~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~--TDiLlGlLKk 188 (674)
T KOG0922|consen 122 QLGEEVGYTIRFEDST-------SKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLH--TDILLGLLKK 188 (674)
T ss_pred CcCceeeeEEEecccC-------CCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhH--HHHHHHHHHH
Confidence 6666666655433332 234789999999999998876 45789999999999984321 2333333332
Q ss_pred c---CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCc
Q 003100 562 L---PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 562 l---~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~ 638 (848)
+ +++.++|+||||+..+ .+...+...+...| .+ ...+++..|...+..+..+.....+.+.+...+.+
T Consensus 189 i~~~R~~LklIimSATlda~--kfS~yF~~a~i~~i--~G-----R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~G 259 (674)
T KOG0922|consen 189 ILKKRPDLKLIIMSATLDAE--KFSEYFNNAPILTI--PG-----RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPG 259 (674)
T ss_pred HHhcCCCceEEEEeeeecHH--HHHHHhcCCceEee--cC-----CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCC
Confidence 2 3457899999999643 45555554333333 22 45567777777666666665555555556667888
Q ss_pred eEEEEEecchHHHHHHHHHHHhc--------cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeE
Q 003100 639 KVIVFCSTGMVTSLLYLLLREMK--------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV 710 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~~--------~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI 710 (848)
-+|||.+.+++.+.+++.|.+.. .-+..+||.|+..++.+++..-..|..+|+++|++++..|.||++.+||
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVV 339 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVV 339 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEE
Confidence 99999999999999999998751 1257899999999999999999999999999999999999999999999
Q ss_pred EcCC------------------CCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 711 QVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 711 ~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
+-|. |-|.++-.||.|||||.| +|+|+.+++..+.
T Consensus 340 DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 340 DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 7554 568899999999999977 8999999987653
No 88
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.4e-27 Score=282.29 Aligned_cols=311 Identities=20% Similarity=0.245 Sum_probs=237.5
Q ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 003100 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (848)
Q Consensus 403 t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~ 482 (848)
+....+.+.++.+++.+||+|+||||||+ ++|.+ ++...... +..+.++.|+|-.|..+++++.+.++..
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~--lle~g~~~------~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQF--LLEEGLGI------AGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHH--HHhhhccc------CCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 44556677777889999999999999999 66654 55554321 2368899999999999999999998876
Q ss_pred CCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc-cccch-hhHHHHHH
Q 003100 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFR-KDVENIVD 560 (848)
Q Consensus 483 ~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~~gf~-~~l~~Il~ 560 (848)
.|-.|++.+-..+.. +....|-|+|.|.|++.+.++ ..|+.+++|||||||+-. +.+|. ..+..++.
T Consensus 122 ~G~~VGY~iRfe~~~-------s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~ 190 (845)
T COG1643 122 LGETVGYSIRFESKV-------SPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLA 190 (845)
T ss_pred cCceeeEEEEeeccC-------CCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHh
Confidence 666676665444432 234789999999999999987 447899999999999853 33322 23445566
Q ss_pred hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC-hhh-HHHHHHHHHHHHhhCCCCc
Q 003100 561 CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP-HEL-HFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 561 ~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~-~~~-k~~~L~~lL~~~~~~~~~~ 638 (848)
..+.+.++|+||||+..+ .|...+...+...+. + ...++...|.... .+. -...+...+..+. ....+
T Consensus 191 ~rr~DLKiIimSATld~~--rfs~~f~~apvi~i~--G-----R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~-~~~~G 260 (845)
T COG1643 191 RRRDDLKLIIMSATLDAE--RFSAYFGNAPVIEIE--G-----RTYPVEIRYLPEAEADYILLDAIVAAVDIHL-REGSG 260 (845)
T ss_pred hcCCCceEEEEecccCHH--HHHHHcCCCCEEEec--C-----CccceEEEecCCCCcchhHHHHHHHHHHHhc-cCCCC
Confidence 667789999999999654 455555443333332 2 4455666663332 333 3445555555544 34578
Q ss_pred eEEEEEecchHHHHHHHHHHH----hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLRE----MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI 714 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~ 714 (848)
.+|||.+...+.+.+++.|.+ ..+.++++||.++..++.++++.-..|..+|++||++++.+|.||+|++||.-+.
T Consensus 261 dILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ 340 (845)
T COG1643 261 SILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGL 340 (845)
T ss_pred CEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCc
Confidence 999999999999999999997 3478999999999999999999888888889999999999999999999997664
Q ss_pred ------------------CCChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 715 ------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 715 ------------------P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
|.|.++..||.|||||.+ +|.||-+++..+
T Consensus 341 ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 341 AKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred ccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 457889999999999976 899999998754
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=4.7e-27 Score=241.98 Aligned_cols=199 Identities=43% Similarity=0.669 Sum_probs=175.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEE
Q 003100 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (848)
Q Consensus 381 f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLI 460 (848)
|+++++++.+.+.|.++|+..|+++|.++++.+++|+++++++|||+|||++|++|+++++..... ..++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 788999999999999999999999999999999999999999999999999999999999887531 12458999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEE
Q 003100 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (848)
Q Consensus 461 L~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVI 540 (848)
++||++|+.|+...+..+.... ++.+..++|+.........+. ..++|+|+||+.|.+++.+.. ..+.+++++|+
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIv 149 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERGK---LDLSKVKYLVL 149 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCC---CChhhCCEEEE
Confidence 9999999999999999987653 788889999887765554443 458999999999999988663 56788999999
Q ss_pred ecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccc
Q 003100 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKRE 590 (848)
Q Consensus 541 DEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~ 590 (848)
||||.+.+.+|...+..++..+++.+|++++|||+++.+..+...++..+
T Consensus 150 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~ 199 (203)
T cd00268 150 DEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNP 199 (203)
T ss_pred eChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCC
Confidence 99999999889999999999999999999999999999988888877644
No 90
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.3e-28 Score=274.99 Aligned_cols=309 Identities=19% Similarity=0.237 Sum_probs=238.6
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.+-|+|..+|-.+-++..|+|.|.|.+|||.++-.+|.+.+.... ++||..|-++|.+|-++++...++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------RVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------RVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------eEEeeChhhhhcchhHHHHHHHhc
Confidence 488999999999999999999999999999997776666554332 799999999999999999988876
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
. |++.+|+..+.. .+.++|+|.+.|..+|.+++ --++.+..||+||+|.|-|...+-.|+.-+-
T Consensus 198 D-----VGLMTGDVTInP--------~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 198 D-----VGLMTGDVTINP--------DASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred c-----cceeecceeeCC--------CCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEE
Confidence 4 778899887653 36899999999999998874 3367899999999999999888888999899
Q ss_pred hcCccceeEEEeccCChHHHHHHHHHhc---cceEEEeecCCCcccccceeecccc---------cCCh-----hhHHHH
Q 003100 561 CLPRRRQSLLFSATMPKEVRRISQLVLK---REHTYIDTVGLGSVETPVKIKQSCL---------VAPH-----ELHFQI 623 (848)
Q Consensus 561 ~l~~~~Q~ll~SATl~~~v~~l~~~~l~---~~~~~i~~~~~~~~~~~~~v~q~~~---------~~~~-----~~k~~~ 623 (848)
.+|++.+.+++|||+|+..+ |+.+.++ .|..++.+ ...|.++.++.. +++. ++.|..
T Consensus 262 llP~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYT-----dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~ 335 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYT-----DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQK 335 (1041)
T ss_pred eccccceEEEEeccCCCHHH-HHHHHHHHhcCCceEEee-----cCCCCcceeeeecCCCCeeEEEEecccccchHHHHH
Confidence 99999999999999999765 6666543 23333332 123444444321 1211 122222
Q ss_pred HH-----------------------------------HHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc-------
Q 003100 624 LH-----------------------------------HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK------- 661 (848)
Q Consensus 624 L~-----------------------------------~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~------- 661 (848)
.. .+++..+. ....++|||+-++++|+.++-.+.++.
T Consensus 336 am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk 414 (1041)
T KOG0948|consen 336 AMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK 414 (1041)
T ss_pred HHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHH
Confidence 22 22222221 123489999999999999987765431
Q ss_pred --------------------------------cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCee
Q 003100 662 --------------------------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSV 709 (848)
Q Consensus 662 --------------------------------~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~V 709 (848)
-.+..+|+++-+.-++-+.-.|.+|-+++|+||.+++.|+|+|.-++|
T Consensus 415 ~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVv 494 (1041)
T KOG0948|consen 415 ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVV 494 (1041)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEE
Confidence 258899999999999999999999999999999999999999998777
Q ss_pred EE----cCCC----CChhHHHHHhhccCCCCC--CceEEEEeCc
Q 003100 710 VQ----VGIP----PDREQYIHRLGRTGREGK--EGEGVLLLAP 743 (848)
Q Consensus 710 I~----yd~P----~s~~~yiQRiGRaGR~G~--~G~~i~l~~~ 743 (848)
+- ||-- .+.-+|+|+.|||||.|. .|.||+++..
T Consensus 495 FT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 495 FTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred EeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 62 2221 256789999999999995 5888888875
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=9.3e-27 Score=265.57 Aligned_cols=324 Identities=23% Similarity=0.266 Sum_probs=244.5
Q ss_pred CCHHHHHH-HHHcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 386 ISPLTIKA-LTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 386 l~~~l~~~-L~~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
....+++. +..+.|. ||..|++++..|... .+=++++.-|||||+++++.++..+-.+ .++
T Consensus 247 ~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-----------~Q~ 314 (677)
T COG1200 247 ANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-----------YQA 314 (677)
T ss_pred ccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-----------Cee
Confidence 34444444 4667886 999999999999863 3558999999999999999988776432 378
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh---HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~---~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
..++||--||.|.++.+.+++... ++.|..++|...-. .....+.++..+|+|+|..-+. . ...++++
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d----~V~F~~L 385 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----D----KVEFHNL 385 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----c----ceeecce
Confidence 999999999999999999999876 69999999976544 3345566777999999954333 2 3567899
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCc-cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV 614 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~-~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~ 614 (848)
.++|+||=|+ |+-.-...+..... .+.+++||||+-+..-.+. .+..-+..+|+....+.. ++... .
T Consensus 386 gLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt-~fgDldvS~IdElP~GRk----pI~T~--~ 453 (677)
T COG1200 386 GLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALT-AFGDLDVSIIDELPPGRK----PITTV--V 453 (677)
T ss_pred eEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH-HhccccchhhccCCCCCC----ceEEE--E
Confidence 9999999999 66655666665555 6789999999754332222 222334555554332221 12222 1
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHH--------HHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHh
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVT--------SLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFR 684 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a--------~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~ 684 (848)
++. .+...+...+...+. .+.++.|.||-.++. ..++..|... ++.+..+||.|+..++..+++.|+
T Consensus 454 i~~-~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 454 IPH-ERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred ecc-ccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH
Confidence 222 334445555555543 577999999976544 4556666643 567999999999999999999999
Q ss_pred cCCceEEEecCCccccccCCCCCeeEEcCCC-CChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 685 ASKRLILVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 685 ~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
+|+++|||||.|.+.|||+|+.+++|.++.- ...++.-|-.||.||.+..+.|++++.+..
T Consensus 531 ~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 531 EGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999998875 368899999999999999999999998755
No 92
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=3.1e-26 Score=278.33 Aligned_cols=322 Identities=18% Similarity=0.191 Sum_probs=205.5
Q ss_pred CCcHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.|+|..++..++. ...+++...+|.|||+...+. +..++..+.. -++|||||+ .|+.||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgli-l~~l~~~g~~--------~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMI-IHQQLLTGRA--------ERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHH-HHHHHHcCCC--------CcEEEEcCH-HHHHHHHHHHHHH
Confidence 489999999877765 347999999999999986554 4444333211 169999997 8999999998765
Q ss_pred hhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-chhh
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKD 554 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-f~~~ 554 (848)
+ ++...++.++. ..... .... ...+++|+|.+.+...-.... .+.-..+++|||||||++-... ....
T Consensus 222 F----~l~~~i~~~~~-~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~--~l~~~~wdlvIvDEAH~lk~~~~~~s~ 293 (956)
T PRK04914 222 F----NLRFSLFDEER-YAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLE--QALAAEWDLLVVDEAHHLVWSEEAPSR 293 (956)
T ss_pred h----CCCeEEEcCcc-hhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHH--HHhhcCCCEEEEechhhhccCCCCcCH
Confidence 4 23333333322 11100 0011 135899999888764211000 1112468999999999986211 1111
Q ss_pred HHHHHHhc-CccceeEEEeccCCh-HHH------------------HHH-------------HHHhccce----------
Q 003100 555 VENIVDCL-PRRRQSLLFSATMPK-EVR------------------RIS-------------QLVLKREH---------- 591 (848)
Q Consensus 555 l~~Il~~l-~~~~Q~ll~SATl~~-~v~------------------~l~-------------~~~l~~~~---------- 591 (848)
..+.+..+ .+...++++|||+-. ... .|. ..++....
T Consensus 294 ~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~ 373 (956)
T PRK04914 294 EYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALG 373 (956)
T ss_pred HHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 12233323 234568999999731 000 010 00000000
Q ss_pred ----------------------------------------EE-EeecCCCcccccceeeccc-c----------------
Q 003100 592 ----------------------------------------TY-IDTVGLGSVETPVKIKQSC-L---------------- 613 (848)
Q Consensus 592 ----------------------------------------~~-i~~~~~~~~~~~~~v~q~~-~---------------- 613 (848)
.+ +.........-+....+.+ +
T Consensus 374 ~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~ 453 (956)
T PRK04914 374 ELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEA 453 (956)
T ss_pred HHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHH
Confidence 00 0000000000000000000 0
Q ss_pred --------------------cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHH-HHhccceeeecCCcc
Q 003100 614 --------------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL-REMKMNVREMYSRKP 672 (848)
Q Consensus 614 --------------------~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L-~~~~~~v~~lhg~ls 672 (848)
....+.|...|..+|.. ....|+||||+++..+..+...| ...|+.+..+||+|+
T Consensus 454 ~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 454 RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS----HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh----cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 00112244445555543 24679999999999999999999 456999999999999
Q ss_pred hhhHHHHHHHHhcC--CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 673 QLYRDRISEEFRAS--KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 673 ~~~R~~i~~~F~~G--~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
+.+|.++++.|+++ ...|||||+++++|+|++.+++||+||+|+++..|+||+||++|.|+.+.+.+++...
T Consensus 530 ~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 530 IIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred HHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 99999999999984 5999999999999999999999999999999999999999999999998876666543
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.9e-26 Score=265.90 Aligned_cols=294 Identities=18% Similarity=0.193 Sum_probs=193.8
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh
Q 003100 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (848)
Q Consensus 420 Iv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~ 499 (848)
++.|+||||||.+|+..+. .++..+ .++||++|+++|+.|+++.+.+.+ +..+..++++......
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~~g----------~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLALG----------KSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHcC----------CeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHH
Confidence 4689999999999865543 343321 269999999999999999998875 3457777877654332
Q ss_pred ---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc---chhhHH--HHHHhcCccceeEEE
Q 003100 500 ---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVE--NIVDCLPRRRQSLLF 571 (848)
Q Consensus 500 ---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g---f~~~l~--~Il~~l~~~~Q~ll~ 571 (848)
...+..+.++|||+|+..+. ..+.++++|||||+|....++ ..-+.. .++.....+.++|++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~ 135 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLG 135 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEE
Confidence 23444566899999988663 346789999999999876443 111111 222333457899999
Q ss_pred eccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh---hhHHHHHHHHHHHHhhCCCCceEEEEEecch
Q 003100 572 SATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH---ELHFQILHHLLKEHILGTPDYKVIVFCSTGM 648 (848)
Q Consensus 572 SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~---~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~ 648 (848)
|||++.+....+. ......+.............++. ...... ...-..+...+.+.+. .+.++|||+|++.
T Consensus 136 SATPsles~~~~~---~g~~~~~~l~~r~~~~~~p~v~v-id~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrG 209 (505)
T TIGR00595 136 SATPSLESYHNAK---QKAYRLLVLTRRVSGRKPPEVKL-IDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRG 209 (505)
T ss_pred eCCCCHHHHHHHh---cCCeEEeechhhhcCCCCCeEEE-EecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCc
Confidence 9997654333221 11112211110000000000000 000000 0111234455555443 3568999966532
Q ss_pred H------------------------------------------------------------HHHHHHHHHHh--ccceee
Q 003100 649 V------------------------------------------------------------TSLLYLLLREM--KMNVRE 666 (848)
Q Consensus 649 ~------------------------------------------------------------a~~l~~~L~~~--~~~v~~ 666 (848)
- ++.+.+.|.+. +.++..
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~ 289 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIAR 289 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEE
Confidence 1 47777888776 678999
Q ss_pred ecCCcchhhH--HHHHHHHhcCCceEEEecCCccccccCCCCCeeE--EcCC----CC------ChhHHHHHhhccCCCC
Q 003100 667 MYSRKPQLYR--DRISEEFRASKRLILVTSDVSARGMDYPDVTSVV--QVGI----PP------DREQYIHRLGRTGREG 732 (848)
Q Consensus 667 lhg~ls~~~R--~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI--~yd~----P~------s~~~yiQRiGRaGR~G 732 (848)
+|+++++.++ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ..+.|+|++||+||.+
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 9999987766 8999999999999999999999999999999986 5553 32 2567899999999999
Q ss_pred CCceEEEEeCcc
Q 003100 733 KEGEGVLLLAPW 744 (848)
Q Consensus 733 ~~G~~i~l~~~~ 744 (848)
..|.+++.....
T Consensus 370 ~~g~viiqt~~p 381 (505)
T TIGR00595 370 DPGQVIIQTYNP 381 (505)
T ss_pred CCCEEEEEeCCC
Confidence 999998765433
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.5e-26 Score=274.98 Aligned_cols=321 Identities=17% Similarity=0.219 Sum_probs=240.3
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 393 ALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 393 ~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.....+|. |.++|++++-.|..+..|+|+||||+|||++.-.++...+..+ -+++|++|.++|.+|.+
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKy 179 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKY 179 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHH
Confidence 34456776 9999999999999999999999999999998666555444332 26999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccch
Q 003100 473 AEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552 (848)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~ 552 (848)
+++...+... .--+++++|+..+. .++.|+|+|.+.|..++..+ ...+..+..||+||+|.|.+...+
T Consensus 180 rdl~~~fgdv-~~~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFDEvHyi~D~eRG 247 (1041)
T COG4581 180 RDLLAKFGDV-ADMVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRG---SESLRDIEWVVFDEVHYIGDRERG 247 (1041)
T ss_pred HHHHHHhhhh-hhhccceecceeeC--------CCCceEEeeHHHHHHHhccC---cccccccceEEEEeeeeccccccc
Confidence 9998887643 22368899998875 34799999999999999887 355789999999999999999999
Q ss_pred hhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh---ccceEEEeecCCCcccccceeecccccC-------ChhhH--
Q 003100 553 KDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL---KREHTYIDTVGLGSVETPVKIKQSCLVA-------PHELH-- 620 (848)
Q Consensus 553 ~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l---~~~~~~i~~~~~~~~~~~~~v~q~~~~~-------~~~~k-- 620 (848)
..++.++-.+|...|++++|||+|+..+ |..++. ..+..+|.. ...+.++.+++... +...+
T Consensus 248 ~VWEE~Ii~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t-----~~RpvPL~~~~~~~~~l~~lvde~~~~~ 321 (1041)
T COG4581 248 VVWEEVIILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVST-----EHRPVPLEHFVYVGKGLFDLVDEKKKFN 321 (1041)
T ss_pred hhHHHHHHhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEee-----cCCCCCeEEEEecCCceeeeecccccch
Confidence 9999999999999999999999998765 444443 112222321 22344444433221 11110
Q ss_pred ---HH-HHH--------------------------------------HHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Q 003100 621 ---FQ-ILH--------------------------------------HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR 658 (848)
Q Consensus 621 ---~~-~L~--------------------------------------~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~ 658 (848)
+. ... .++.. +.....-++|+|+-++..|+.++..+.
T Consensus 322 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~-l~~~~~lP~I~F~FSr~~Ce~~a~~~~ 400 (1041)
T COG4581 322 AENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNK-LDKDNLLPAIVFSFSRRGCEEAAQILS 400 (1041)
T ss_pred hhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhh-hhhhcCCceEEEEEchhhHHHHHHHhc
Confidence 00 000 01111 111223489999999999988877664
Q ss_pred Hh----------------------------cc-------------ceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 659 EM----------------------------KM-------------NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 659 ~~----------------------------~~-------------~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.+ ++ .+.++|++|-+..+..+...|..|-++|++||.++
T Consensus 401 ~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 401 TLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred ccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 21 11 35699999999999999999999999999999999
Q ss_pred cccccCCCCCeeE----EcC----CCCChhHHHHHhhccCCCCC--CceEEEEeCcc
Q 003100 698 ARGMDYPDVTSVV----QVG----IPPDREQYIHRLGRTGREGK--EGEGVLLLAPW 744 (848)
Q Consensus 698 ~rGlDip~V~~VI----~yd----~P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~~ 744 (848)
+.|+|+|.-++|+ .+| ..-++.+|.|+.|||||.|- .|.++++-.+.
T Consensus 481 s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 481 AIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred hhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 9999999877776 222 23578999999999999995 58888775543
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.6e-25 Score=265.51 Aligned_cols=324 Identities=19% Similarity=0.235 Sum_probs=223.6
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
++++|.-.--.+..| -|+.++||+|||++|++|++..++.. ..++||+||++||.|.++++..++..
T Consensus 83 ~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 83 HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 666675554444444 58999999999999999999776532 14899999999999999999999877
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCccc---ccCCccEEEEecccccc-cc-------
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSV---RLMGLKMLVLDEADHLL-DL------- 549 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~~~---~l~~l~~lVIDEAH~ll-~~------- 549 (848)
. ++.+.+++|+.+.......+ .++|+|+||++| .++|..+..+.. -...+.++||||||.|+ |.
T Consensus 150 l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLII 225 (896)
T PRK13104 150 L-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLII 225 (896)
T ss_pred c-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceee
Confidence 5 89999999998766544433 389999999999 999987632211 12589999999999975 21
Q ss_pred -c-------chhhHHHHHHhcCcc--------------ceeEEEecc--------------CC--------hH------H
Q 003100 550 -G-------FRKDVENIVDCLPRR--------------RQSLLFSAT--------------MP--------KE------V 579 (848)
Q Consensus 550 -g-------f~~~l~~Il~~l~~~--------------~Q~ll~SAT--------------l~--------~~------v 579 (848)
| ....+..++..+... .+.+.+|-. ++ .. +
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i 305 (896)
T PRK13104 226 SGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHV 305 (896)
T ss_pred eCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHH
Confidence 0 122222233322211 122222221 00 00 0
Q ss_pred HHHH--HHHhccceEE---------Eeec-------------------------------------------------C-
Q 003100 580 RRIS--QLVLKREHTY---------IDTV-------------------------------------------------G- 598 (848)
Q Consensus 580 ~~l~--~~~l~~~~~~---------i~~~-------------------------------------------------~- 598 (848)
.... ..++..+..+ ++.. +
T Consensus 306 ~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGM 385 (896)
T PRK13104 306 NAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGM 385 (896)
T ss_pred HHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccC
Confidence 0000 0111111111 1100 0
Q ss_pred ----------------C--Cccccccee----ecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Q 003100 599 ----------------L--GSVETPVKI----KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLL 656 (848)
Q Consensus 599 ----------------~--~~~~~~~~v----~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~ 656 (848)
. ...+++.++ ....++.....|+..+...+...+ ..+.++||||+|+..++.++.+
T Consensus 386 TGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~ 463 (896)
T PRK13104 386 TGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred CCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHH
Confidence 0 000000000 111233445667777777666544 3567999999999999999999
Q ss_pred HHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCC-------------------------------
Q 003100 657 LREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD------------------------------- 705 (848)
Q Consensus 657 L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~------------------------------- 705 (848)
|.+.++++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 464 L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (896)
T PRK13104 464 LKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred HHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999994 9999999999999851
Q ss_pred -------CCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 706 -------VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 706 -------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
==+||--..+.|..---|-.||+||-|.+|.+-.|++-.|.
T Consensus 542 ~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 542 DEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11677777888888889999999999999999999986653
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=1e-25 Score=258.22 Aligned_cols=294 Identities=25% Similarity=0.297 Sum_probs=201.8
Q ss_pred CCCcHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..|+++|++++..+.. ++..++++|||+|||++++. ++..+. ..+||||||++|+.|+++.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~-------------~~~Lvlv~~~~L~~Qw~~~~ 100 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELK-------------RSTLVLVPTKELLDQWAEAL 100 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHhc-------------CCEEEEECcHHHHHHHHHHH
Confidence 4599999999999998 89999999999999997544 332221 13899999999999999777
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHH--HHhccCcccccCCccEEEEecccccccccchh
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH--IENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~--L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~ 553 (848)
.+.+... ..++.+.|+..... . ..|+|+|...+... +.. +....+.+||+||||++....|..
T Consensus 101 ~~~~~~~--~~~g~~~~~~~~~~-------~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~~~~ 165 (442)
T COG1061 101 KKFLLLN--DEIGIYGGGEKELE-------P-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPSYRR 165 (442)
T ss_pred HHhcCCc--cccceecCceeccC-------C-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHHHHH
Confidence 7765321 13344444433211 0 36999999998775 221 223368999999999987765444
Q ss_pred hHHHHHHhcCccceeEEEeccCChHH-HHHHHHHhcc-------------------ceEEEeecC-CCcccc--cceeec
Q 003100 554 DVENIVDCLPRRRQSLLFSATMPKEV-RRISQLVLKR-------------------EHTYIDTVG-LGSVET--PVKIKQ 610 (848)
Q Consensus 554 ~l~~Il~~l~~~~Q~ll~SATl~~~v-~~l~~~~l~~-------------------~~~~i~~~~-~~~~~~--~~~v~q 610 (848)
.. ..+.....++++|||++... ......+... ++.++.... ...... ......
T Consensus 166 ~~----~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 166 IL----ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HH----HhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 33 33322222899999976433 1111111110 111111100 000000 000000
Q ss_pred ------------------ccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcc
Q 003100 611 ------------------SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 672 (848)
Q Consensus 611 ------------------~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls 672 (848)
.........+...+..++..+. .+.++||||.+..++..++..|...++ +..+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~ 317 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP 317 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC
Confidence 0011112223333344444331 356999999999999999999998877 899999999
Q ss_pred hhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCC
Q 003100 673 QLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGR 730 (848)
Q Consensus 673 ~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR 730 (848)
..+|..+++.|+.|.+.+||++.++..|+|+|+++++|......|...|+||+||.-|
T Consensus 318 ~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 318 KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999
No 97
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9e-25 Score=258.41 Aligned_cols=148 Identities=21% Similarity=0.339 Sum_probs=127.0
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCC
Q 003100 382 DECGISPLTIKALT-----AAGYIQM---TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (848)
Q Consensus 382 ~~l~l~~~l~~~L~-----~~g~~~~---t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~ 453 (848)
+.+.+.+++.+.+. .+||..| +|+|.++|+.++.++++|++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 56778888888877 6899988 9999999999999999999999999999999999998876431
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCccccc
Q 003100 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSVRL 532 (848)
Q Consensus 454 ~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~~~~l 532 (848)
.++||+||++||.|+++.+..+..+. ++.+.+++||.+...+...+ .++|+|+||++| +++|.... +.+
T Consensus 137 ---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~---~~~ 206 (970)
T PRK12899 137 ---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNS---IAT 206 (970)
T ss_pred ---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCC---CCc
Confidence 37899999999999999999998765 79999999999987665444 389999999999 99998652 222
Q ss_pred -------CCccEEEEecccccc
Q 003100 533 -------MGLKMLVLDEADHLL 547 (848)
Q Consensus 533 -------~~l~~lVIDEAH~ll 547 (848)
..+.++||||||.|+
T Consensus 207 ~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 207 RKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CHHHhhcccccEEEEechhhhh
Confidence 356899999999975
No 98
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.7e-25 Score=246.79 Aligned_cols=315 Identities=18% Similarity=0.203 Sum_probs=236.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
..|.....++.+.+..|..++.|||.+.||||||. +|| +.|+..++... | .+-+..|.|..|..++.++.
T Consensus 352 rq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~--QyL~edGY~~~-----G-mIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 352 RQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLA--QYLYEDGYADN-----G-MIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred HhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhH--HHHHhcccccC-----C-eeeecCchHHHHHHHHHHHH
Confidence 45666778888999999999999999999999999 455 44777665432 2 46688999999999999998
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
..+....|-.|++.+--.+.. .....|-++|.|.|++..-.+ ..|.++++||+||||.-.-. .+.+.
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT-------~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslN--tDilf 488 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVT-------SEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLN--TDILF 488 (1042)
T ss_pred HHhCCccccccceEEEeeecC-------CCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccc--hHHHH
Confidence 887554454455444333322 223678999999999876544 34778999999999985421 22222
Q ss_pred HHHH---hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhh
Q 003100 557 NIVD---CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHIL 633 (848)
Q Consensus 557 ~Il~---~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~ 633 (848)
-+++ .-+.+.++|++|||+. .+.|...+.+.+...|.. ...++...|...+.++..+....-....+.
T Consensus 489 Gllk~~larRrdlKliVtSATm~--a~kf~nfFgn~p~f~IpG-------RTyPV~~~~~k~p~eDYVeaavkq~v~Ihl 559 (1042)
T KOG0924|consen 489 GLLKKVLARRRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPG-------RTYPVEIMYTKTPVEDYVEAAVKQAVQIHL 559 (1042)
T ss_pred HHHHHHHHhhccceEEEeecccc--HHHHHHHhCCCceeeecC-------CccceEEEeccCchHHHHHHHHhhheEeec
Confidence 2332 2345789999999984 456776666444444432 455677777777777766655554444455
Q ss_pred CCCCceEEEEEecchHHHHHHHHHHHh----------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccC
Q 003100 634 GTPDYKVIVFCSTGMVTSLLYLLLREM----------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDY 703 (848)
Q Consensus 634 ~~~~~kiLVF~~s~~~a~~l~~~L~~~----------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDi 703 (848)
..+.+-+|||.+.++.++-.+..+... ++.|..+++.|++..+.++++.-..|..+++|||++++..|.+
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 567789999999988777666555432 5689999999999999999999999999999999999999999
Q ss_pred CCCCeeEEcCC------------------CCChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 704 PDVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 704 p~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
|++.+||..++ |.|.+.-.||.|||||.| +|.|+.+++..
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 99999997664 568888899999999987 89999999763
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.5e-24 Score=257.18 Aligned_cols=322 Identities=20% Similarity=0.214 Sum_probs=234.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.. |+++|.-..-.+..|+ |..++||+|||+++.+|++-..+.+. .+-|++||..||.|.++++.
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK-----------GVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC-----------CEEEEecCHHHHHHHHHHHH
Confidence 4543 7888877776666664 99999999999999999963333221 36799999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++... ++.+++++|+.+.......+ .++|+|+||++| .++|...... ...++.+.++||||||.|+ |..
T Consensus 144 ~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 144 PLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred HHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 998765 89999999998876554443 289999999999 8999766321 1236789999999999864 110
Q ss_pred --------------chhhHHHHHHhcC-----------------------------------------------------
Q 003100 551 --------------FRKDVENIVDCLP----------------------------------------------------- 563 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~----------------------------------------------------- 563 (848)
....+..++..+.
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 1111111111110
Q ss_pred ---cc-------------------------------------------------------------ceeEEEeccCChHH
Q 003100 564 ---RR-------------------------------------------------------------RQSLLFSATMPKEV 579 (848)
Q Consensus 564 ---~~-------------------------------------------------------------~Q~ll~SATl~~~v 579 (848)
++ .++.+||.|...+.
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 379 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA 379 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH
Confidence 00 13345666665544
Q ss_pred HHHHHHHhccceEEEeecCCCcccccceee-cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Q 003100 580 RRISQLVLKREHTYIDTVGLGSVETPVKIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR 658 (848)
Q Consensus 580 ~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~-q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~ 658 (848)
..+...+. -+...|.+. ....... ...+......|+..+...+..... .+.++||||+|...++.++..|.
T Consensus 380 ~E~~~iY~-l~vv~IPtn-----kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~ 451 (830)
T PRK12904 380 EEFREIYN-LDVVVIPTN-----RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLK 451 (830)
T ss_pred HHHHHHhC-CCEEEcCCC-----CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHH
Confidence 44444432 122222211 0001111 223444566788888888876442 45699999999999999999999
Q ss_pred HhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCC--------------------------------
Q 003100 659 EMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDV-------------------------------- 706 (848)
Q Consensus 659 ~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V-------------------------------- 706 (848)
+.++++..+|+. +.+|+..+..|+.+...|+|||++++||+||+==
T Consensus 452 ~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (830)
T PRK12904 452 KAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEE 529 (830)
T ss_pred HCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhh
Confidence 999999999996 7899999999999999999999999999999642
Q ss_pred ------CeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 707 ------TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 707 ------~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
=+||-...|.|..---|-.|||||.|.+|.+-.|++-.|.
T Consensus 530 v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 530 VLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1688888899999999999999999999999999987653
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.8e-25 Score=257.75 Aligned_cols=321 Identities=20% Similarity=0.212 Sum_probs=228.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|. .|+++|.-+.-.+..|+ |+.+.||+|||++..+|++...+.+. .|-|++||--||.|-++.+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-----------~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-----------GVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-----------CeEEEeccHHHHHhhHHHHH
Confidence 454 48888887776776665 99999999999999999887766442 58899999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccC---cccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~---~~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++... |+.|++++++.........+ .|+|+++|..-| .++|...-. .......+.+.||||+|.++ |..
T Consensus 143 ~~~~~L-Gl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 143 ELYRWL-GLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHhc-CCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 999876 89999999876655433333 389999998776 344443211 01224568899999999854 100
Q ss_pred --------------chhhHHHHHHhcC-----------------------------------------------------
Q 003100 551 --------------FRKDVENIVDCLP----------------------------------------------------- 563 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~----------------------------------------------------- 563 (848)
+...+..++..+.
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence 0000111111000
Q ss_pred --------------cc-------------------------------------------------------------cee
Q 003100 564 --------------RR-------------------------------------------------------------RQS 568 (848)
Q Consensus 564 --------------~~-------------------------------------------------------------~Q~ 568 (848)
++ .++
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 00 123
Q ss_pred EEEeccCChHHHHHHHHHhccceEEEeecCCCcccccce--eecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEec
Q 003100 569 LLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVK--IKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCST 646 (848)
Q Consensus 569 ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~--v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s 646 (848)
.+||.|...+-..+...+. -+...|.+. .|.. -....+......|...+...+.... ..+.++||||+|
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~-l~vv~IPtn------kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~s 449 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYN-MEVITIPTN------RPVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVA 449 (796)
T ss_pred hccCCCCHHHHHHHHHHhC-CCEEEcCCC------CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCc
Confidence 4455555444333333322 122222111 1111 1122344456678888887776543 256799999999
Q ss_pred chHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCC---CCC-----eeEEcCCCCCh
Q 003100 647 GMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP---DVT-----SVVQVGIPPDR 718 (848)
Q Consensus 647 ~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip---~V~-----~VI~yd~P~s~ 718 (848)
+..++.++..|.+.++++..+|+++.+.++..+...++.|. |+|||++++||+||+ +|. +||+++.|.+.
T Consensus 450 i~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ 527 (796)
T PRK12906 450 IESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESR 527 (796)
T ss_pred HHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcH
Confidence 99999999999999999999999998777777777666666 999999999999994 899 99999999999
Q ss_pred hHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 719 EQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 719 ~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
..|.|++|||||.|.+|.+..|++..|.
T Consensus 528 ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 528 RIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHHHHhhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999999998764
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1e-23 Score=261.72 Aligned_cols=315 Identities=19% Similarity=0.213 Sum_probs=198.0
Q ss_pred CCcHHHHHHHHHHhC-----CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE-----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~-----g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
.++++|.+||..+.+ .+.++++++||||||.+ ++.++..+++.... .++|||+|+++|+.|+.+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~~~--------~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAKRF--------RRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcCcc--------CeEEEEecHHHHHHHHHHHH
Confidence 489999999987752 46799999999999987 44556666654321 27999999999999999988
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC--cccccCCccEEEEeccccccc-----
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG--LSVRLMGLKMLVLDEADHLLD----- 548 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~--~~~~l~~l~~lVIDEAH~ll~----- 548 (848)
..+.... ...+..+++..... .........|+|+|...|...+..... ....+..+++||+||||+-..
T Consensus 484 ~~~~~~~-~~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 484 KDTKIEG-DQTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred Hhccccc-ccchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 8763211 11111112111111 111123468999999998776532211 113457789999999999531
Q ss_pred ----cc------chhhHHHHHHhcCccceeEEEeccCChHHHHHHHH--------------Hhcc--ceEEEee-c---C
Q 003100 549 ----LG------FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQL--------------VLKR--EHTYIDT-V---G 598 (848)
Q Consensus 549 ----~g------f~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~--------------~l~~--~~~~i~~-~---~ 598 (848)
.+ +...+..|+.+. +...|+||||+......+... ++-. ++..+.. . +
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 11 235667777765 346799999986432211100 0000 0111111 0 0
Q ss_pred C--Ccc---cccceeeccc--ccCCh---------------hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Q 003100 599 L--GSV---ETPVKIKQSC--LVAPH---------------ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLL 656 (848)
Q Consensus 599 ~--~~~---~~~~~v~q~~--~~~~~---------------~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~ 656 (848)
. ... .........+ ...+. ......+..-+..++.....+++||||.+..+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0 000 0000000000 00000 011112222222333333357999999999999999988
Q ss_pred HHHh------cc---ceeeecCCcchhhHHHHHHHHhcCCc-eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhh
Q 003100 657 LREM------KM---NVREMYSRKPQLYRDRISEEFRASKR-LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLG 726 (848)
Q Consensus 657 L~~~------~~---~v~~lhg~ls~~~R~~i~~~F~~G~~-~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiG 726 (848)
|.+. ++ .+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7763 12 4567888875 47789999999886 69999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003100 727 RTGREG 732 (848)
Q Consensus 727 RaGR~G 732 (848)
|+.|.-
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999964
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=1.6e-23 Score=250.97 Aligned_cols=322 Identities=19% Similarity=0.183 Sum_probs=246.2
Q ss_pred CCHHHHHHHH-HcCCCCCcHHHHHHHHHHhC----C--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 386 ISPLTIKALT-AAGYIQMTRVQEATLSACLE----G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 386 l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~----g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+......+. .++|. -|+=|..||..+.+ + .|=+|||.-|-|||-+++=+++..++.+ .+|
T Consensus 579 ~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQV 646 (1139)
T COG1197 579 PDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQV 646 (1139)
T ss_pred CChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeE
Confidence 3444455554 35665 79999999999875 3 4789999999999999887777666543 379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhH---hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~---~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
.|||||.-||+|.++.|.+.+..+ .++|..+.--...+. ....+..+..||||+|. .+|..+ +.+.++
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kd----v~FkdL 717 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKD----VKFKDL 717 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCC----cEEecC
Confidence 999999999999999999999877 577777665544433 33456678899999994 444443 667899
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
.+|||||-|+ |+-.-.+-++.+..+.-++-+|||+-+..-.++-..++ +..+|.+..... ..++.++...
T Consensus 718 GLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiR-dlSvI~TPP~~R----~pV~T~V~~~ 787 (1139)
T COG1197 718 GLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIR-DLSVIATPPEDR----LPVKTFVSEY 787 (1139)
T ss_pred CeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcch-hhhhccCCCCCC----cceEEEEecC
Confidence 9999999999 66666777788888899999999985555445544444 444554432222 1222222222
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEe
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVT 693 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa 693 (848)
++.. +-..+++++. .++++-..+|..+..+.+...|+++ ...+.+.||.|+..+-+.++..|.+|+.+||||
T Consensus 788 d~~~---ireAI~REl~---RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 788 DDLL---IREAILRELL---RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVC 861 (1139)
T ss_pred ChHH---HHHHHHHHHh---cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 2221 1122333332 4778999999999999999999987 567999999999999999999999999999999
Q ss_pred cCCccccccCCCCCeeEEcCCC-CChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 694 SDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
|.+.+.|||||+++.+|..+.- ...++..|..||+||..+.+.||+++.+.
T Consensus 862 TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 862 TTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999976664 36789999999999999999999999863
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.9e-22 Score=211.34 Aligned_cols=303 Identities=18% Similarity=0.224 Sum_probs=215.3
Q ss_pred CCcHHHHHHHHH----HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~----il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
++++.|+.+-.. +.+.++.+|.|-||+|||.. +.+.++..++.+ .++.|.+|+...|.+++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC----------CeEEEecCcccchHHHHHHHH
Confidence 589999887554 44578999999999999996 677777777653 368899999999999999998
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
..+. +..+.+++|+..... ...++|||.-.|+++-+ .++++||||+|...-..-.....
T Consensus 166 ~aF~---~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 166 QAFS---NCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred Hhhc---cCCeeeEecCCchhc--------cccEEEEehHHHHHHHh----------hccEEEEeccccccccCCHHHHH
Confidence 8764 566888998876432 15899999888877543 36889999999865322111122
Q ss_pred HHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHH------HHHHHHHHH
Q 003100 557 NIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHF------QILHHLLKE 630 (848)
Q Consensus 557 ~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~------~~L~~lL~~ 630 (848)
.+-+...+.--+|.+|||.++.++.-+. ......+.. ...-...+..+..++...+...++ ..|...|..
T Consensus 225 Av~~ark~~g~~IylTATp~k~l~r~~~---~g~~~~~kl-p~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lek 300 (441)
T COG4098 225 AVKKARKKEGATIYLTATPTKKLERKIL---KGNLRILKL-PARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEK 300 (441)
T ss_pred HHHHhhcccCceEEEecCChHHHHHHhh---hCCeeEeec-chhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHH
Confidence 2334445567789999999988664332 222222221 111112233333333333333333 256677776
Q ss_pred HhhCCCCceEEEEEecchHHHHHHHHHHH-hc-cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCe
Q 003100 631 HILGTPDYKVIVFCSTGMVTSLLYLLLRE-MK-MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 631 ~~~~~~~~kiLVF~~s~~~a~~l~~~L~~-~~-~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
+.. .+.+++||+++....+.++..|+. .. ..+...|+.. ..|.+..+.|++|++.+||+|.+++||+.+|+|++
T Consensus 301 q~~--~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV 376 (441)
T COG4098 301 QRK--TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDV 376 (441)
T ss_pred HHh--cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceE
Confidence 653 567999999999999999999954 32 3457788774 46999999999999999999999999999999998
Q ss_pred eEEcCC--CCChhHHHHHhhccCCCCC--CceEEEEeCc
Q 003100 709 VVQVGI--PPDREQYIHRLGRTGREGK--EGEGVLLLAP 743 (848)
Q Consensus 709 VI~yd~--P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~ 743 (848)
+|.-.- -.+.+.++|.+||+||.-. .|..+.|..-
T Consensus 377 ~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 377 FVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred EEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 664322 2578899999999999653 4666666543
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=5.7e-24 Score=211.83 Aligned_cols=166 Identities=37% Similarity=0.601 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 003100 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (848)
Q Consensus 403 t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~ 482 (848)
||+|.++++.+.+++++++.||||+|||++|++|+++.+.+.. . .++||++|+++|+.|+.+.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-~--------~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-D--------ARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-S--------SEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-C--------ceEEEEeecccccccccccccccccc-
Confidence 7899999999999999999999999999999999999887652 1 27999999999999999999999876
Q ss_pred CCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhc
Q 003100 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (848)
Q Consensus 483 ~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l 562 (848)
.++.+..++++............+.++|+|+||++|.+.+.... ..+.++++|||||+|.+..+++...+..|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 47889999998876534433335568999999999999998742 245669999999999999988888999998887
Q ss_pred Cc--cceeEEEeccCChHHHH
Q 003100 563 PR--RRQSLLFSATMPKEVRR 581 (848)
Q Consensus 563 ~~--~~Q~ll~SATl~~~v~~ 581 (848)
.. +.|++++|||++..++.
T Consensus 148 ~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HTTTTSEEEEEESSSTHHHHH
T ss_pred cCCCCCcEEEEeeCCChhHhh
Confidence 43 58999999999976654
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=2.8e-22 Score=244.78 Aligned_cols=321 Identities=14% Similarity=0.198 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|++||.+++.+++ .|.++|++..+|.|||+. .+.++..+....... ..+|||||. .+..||.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ-aIalL~~L~~~~~~~-------gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ-TISLLGYLHEYRGIT-------GPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH-HHHHHHHHHHhcCCC-------CCEEEEeCh-HHHHHHHHHHH
Confidence 68999999999876 578899999999999997 455555554422111 147999996 66688999988
Q ss_pred HHhhcCCCceEEEEeCCcchhHhh--hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~--~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
+++ +.+.+..++|........ ..+....++|+|+|++.+...... +.-..+.+|||||||++-+. ...
T Consensus 240 kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sk 309 (1033)
T PLN03142 240 RFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSL 309 (1033)
T ss_pred HHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHH
Confidence 875 467777777765433221 122334589999999998765432 12236789999999998764 334
Q ss_pred HHHHHHhcCccceeEEEeccCC-hHHHHHHHH---Hh--------------------------------------cc---
Q 003100 555 VENIVDCLPRRRQSLLFSATMP-KEVRRISQL---VL--------------------------------------KR--- 589 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl~-~~v~~l~~~---~l--------------------------------------~~--- 589 (848)
+..++..+.. ...+++|+|+- +.+..+... +. +.
T Consensus 310 lskalr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 310 LSKTMRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 4555555543 34578899963 222111111 00 00
Q ss_pred ------ceEE--EeecCCCcccc-------------------cce-------ee----ccc---------------ccCC
Q 003100 590 ------EHTY--IDTVGLGSVET-------------------PVK-------IK----QSC---------------LVAP 616 (848)
Q Consensus 590 ------~~~~--i~~~~~~~~~~-------------------~~~-------v~----q~~---------------~~~~ 616 (848)
|+.. +-.+....... ... ++ +.+ ..+.
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 0000 00000000000 000 00 000 0011
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC---CceEEEe
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS---KRLILVT 693 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G---~~~VLVa 693 (848)
...|+..|..+|.... ..+.++|||+........|..+|...++.++.+||+++..+|..+++.|... ...+|++
T Consensus 469 ~SgKl~lLdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhHHHHHHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 2244555555555432 3567999999999999999999999999999999999999999999999753 3467999
Q ss_pred cCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceE--EEEeCc
Q 003100 694 SDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG--VLLLAP 743 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~--i~l~~~ 743 (848)
|.+++.|||+..+++||+||+++++..+.|++||+.|.|+...+ +.|++.
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999987544 445554
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=239.96 Aligned_cols=344 Identities=21% Similarity=0.254 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATL--SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI--~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
+++....-.....|...++.+|.+++ +.++.++++|+.+||+.|||++.-+-++..++.... .++.+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llil 276 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLIL 276 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEec
Confidence 33334444456789999999999997 778899999999999999999998888887776542 488899
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEec
Q 003100 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDE 542 (848)
|....+..-...+..++... |+.|-.++|....... ...-.|.|||-++-..++..--. .-++..+.+||+||
T Consensus 277 p~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~-----~k~~sv~i~tiEkanslin~lie-~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 277 PYVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKR-----RKRESVAIATIEKANSLINSLIE-QGRLDFLGMVVVDE 349 (1008)
T ss_pred ceeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCc-----ccceeeeeeehHhhHhHHHHHHh-cCCccccCcEEEee
Confidence 98888877777777766544 7777777765543221 12258999999987655543210 12356789999999
Q ss_pred ccccccccchhhHHHHHHhc-----CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccc----
Q 003100 543 ADHLLDLGFRKDVENIVDCL-----PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCL---- 613 (848)
Q Consensus 543 AH~ll~~gf~~~l~~Il~~l-----~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~---- 613 (848)
.|.+.+.+.+..++.++..+ ....|+|+||||+++.- +.+.++.... + .... .|..+..+..
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~-y--~t~f----RPv~L~E~ik~G~~ 420 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFV-Y--TTRF----RPVPLKEYIKPGSL 420 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhh-e--eccc----CcccchhccCCCcc
Confidence 99999999888888776632 33467999999998742 2333332111 1 1111 1112211111
Q ss_pred cCChhhHHHHHHHHH-------------------HHHhhCCCCceEEEEEecchHHHHHHHHHHHh--------------
Q 003100 614 VAPHELHFQILHHLL-------------------KEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------------- 660 (848)
Q Consensus 614 ~~~~~~k~~~L~~lL-------------------~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-------------- 660 (848)
..... +...+..+- .+.+ ..+..+||||++++.|+.++..+...
T Consensus 421 i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~ 497 (1008)
T KOG0950|consen 421 IYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLW 497 (1008)
T ss_pred cccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHH
Confidence 11111 222222221 1111 12446999999999999887655321
Q ss_pred ------------------------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEc---C
Q 003100 661 ------------------------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQV---G 713 (848)
Q Consensus 661 ------------------------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~y---d 713 (848)
.+.+.++|++++..+|..+...|++|.+.|++||+.++-|+|.|..+++|-. +
T Consensus 498 ~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g 577 (1008)
T KOG0950|consen 498 ELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVG 577 (1008)
T ss_pred HHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccc
Confidence 2368999999999999999999999999999999999999999999988843 3
Q ss_pred C-CCChhHHHHHhhccCCCCC--CceEEEEeCcchhhHHHHhccCCC
Q 003100 714 I-PPDREQYIHRLGRTGREGK--EGEGVLLLAPWEEYFLDDLKDLPL 757 (848)
Q Consensus 714 ~-P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~~e~~~l~~L~~~~l 757 (848)
. ..+.-+|.|++|||||+|- .|.+++++.+.|......+-..++
T Consensus 578 ~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 578 REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred cchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccc
Confidence 2 3577899999999999984 699999999988654444443333
No 107
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=241.19 Aligned_cols=322 Identities=17% Similarity=0.167 Sum_probs=233.4
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
...+..+.+.|.++.+++.++|++.||+|||+..---+++.....+ ....+++..|+|--|..+++++...-
T Consensus 172 LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred CccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHh
Confidence 3457788889999999999999999999999942222444444333 23469999999999999999988776
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc-cccchhhHHHH
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENI 558 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~~gf~~~l~~I 558 (848)
....+-.|++-++..+... ....+++||.|.|++.|..+ ..+..+.+||+||+|.-. +.+|.-.+.+.
T Consensus 244 ~~~~g~~VGYqvrl~~~~s-------~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~ 312 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESKRS-------RETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKD 312 (924)
T ss_pred ccccCCeeeEEEeeecccC-------CceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHH
Confidence 5555656666555444321 22689999999999999875 457899999999999864 44466666666
Q ss_pred HHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCccc--------------ccceeecc------------c
Q 003100 559 VDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVE--------------TPVKIKQS------------C 612 (848)
Q Consensus 559 l~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~--------------~~~~v~q~------------~ 612 (848)
+-...++.++|+||||+..+ .+...+...+...| .+..... ......+. .
T Consensus 313 lL~~~p~LkvILMSAT~dae--~fs~YF~~~pvi~i--~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 313 LLPRNPDLKVILMSATLDAE--LFSDYFGGCPVITI--PGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARL 388 (924)
T ss_pred HhhhCCCceEEEeeeecchH--HHHHHhCCCceEee--cCCCcchHHHHHHHHHHHhcccccccccccccccCccccccc
Confidence 65666889999999999744 34444433222222 2111000 00000000 0
Q ss_pred ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-------ccceeeecCCcchhhHHHHHHHHhc
Q 003100 613 LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------KMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 613 ~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-------~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
.....+-.+..+..++.........+.+|||.++..+...+++.|... .+-+..+|+.|+..+++.++.....
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~ 468 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK 468 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC
Confidence 011122345566666666666666889999999999999999999642 3678999999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCC--------C----------CChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGI--------P----------PDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~--------P----------~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
|..+|+++|++++.+|.|++|-+||+.+. - -+.+.-.||.|||||. .+|.||.+++...
T Consensus 469 g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 469 GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 99999999999999999999999996553 2 2556678999999996 5899999998743
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.4e-22 Score=239.78 Aligned_cols=324 Identities=18% Similarity=0.196 Sum_probs=219.8
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
++++|.-.--.+. +.-|+.++||.|||++|.+|++...+... .|.||+|++.||.|.++++..++.+
T Consensus 83 ~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 83 HFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred cCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 6677755444444 44589999999999999999987665332 4899999999999999999999987
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCcc---cccCCccEEEEeccccccccc-------
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLS---VRLMGLKMLVLDEADHLLDLG------- 550 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~~---~~l~~l~~lVIDEAH~ll~~g------- 550 (848)
+ |+.|.+++++.+... ......++|+++||+.| .++|..+-... .-...+.++||||||.++.-.
T Consensus 150 l-Glsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 150 L-GLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred c-CCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 5 999999999877532 22333589999999999 88887652111 123678999999999875211
Q ss_pred ---------chhhHHHHHHhcCc-------------------cceeEEEecc--------C-------------------
Q 003100 551 ---------FRKDVENIVDCLPR-------------------RRQSLLFSAT--------M------------------- 575 (848)
Q Consensus 551 ---------f~~~l~~Il~~l~~-------------------~~Q~ll~SAT--------l------------------- 575 (848)
+...+..++..+.+ ..+.+-+|-. +
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 11111111211110 1111211110 0
Q ss_pred -ChHHHHHHH--HHhccceE---------EEeec----------------------------------------------
Q 003100 576 -PKEVRRISQ--LVLKREHT---------YIDTV---------------------------------------------- 597 (848)
Q Consensus 576 -~~~v~~l~~--~~l~~~~~---------~i~~~---------------------------------------------- 597 (848)
...+....+ .++..+.. +++..
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence 000000000 00111111 11100
Q ss_pred ------C--------------CC--ccccccee----ecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHH
Q 003100 598 ------G--------------LG--SVETPVKI----KQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTS 651 (848)
Q Consensus 598 ------~--------------~~--~~~~~~~v----~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~ 651 (848)
+ .. ..+++.++ ....++.....|+..+..-+...+. .+.++||||.|...++
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRE--RGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCcHHHHH
Confidence 0 00 00000000 0112333456677777666665543 4679999999999999
Q ss_pred HHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCC--------------------------
Q 003100 652 LLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD-------------------------- 705 (848)
Q Consensus 652 ~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~-------------------------- 705 (848)
.++.+|...++.+..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999951
Q ss_pred -----------CCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 706 -----------VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 706 -----------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
==+||-...+.|..---|-.|||||-|.+|.+..|++-.|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888888988889999999999999999999987664
No 109
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=211.24 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=235.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
...|...+.+++..+.|++..-...+..+.+-+..+.+++-+++.+.||||||. ++|.+-.-+..... ..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~--------~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHL--------TG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhc--------cc
Confidence 567999999999999999877666777777888888899999999999999999 56654222211111 24
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+.+..|.|..|.+++.++...+.-..|-.|++.+.-.+...... -+-+||.|+|++...++ -.+..+++
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T-------~Lky~tDgmLlrEams~----p~l~~y~v 162 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT-------LLKYCTDGMLLREAMSD----PLLGRYGV 162 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhH-------HHHHhcchHHHHHHhhC----cccccccE
Confidence 78999999999999999888775544555555444333322221 23389999999988876 34688999
Q ss_pred EEEecccccccc-c-chhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 538 LVLDEADHLLDL-G-FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 538 lVIDEAH~ll~~-g-f~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
||+||||.-.-. + ....+..++..- ++.++|+||||+... .+...+.+ .+++.+.+ ..+++.+|...
T Consensus 163 iiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~--Kfq~yf~n--~Pll~vpg------~~PvEi~Yt~e 231 (699)
T KOG0925|consen 163 IILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE--KFQRYFGN--APLLAVPG------THPVEIFYTPE 231 (699)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH--HHHHHhCC--CCeeecCC------CCceEEEecCC
Confidence 999999974321 0 122233333333 588999999998543 34334433 23333222 23455566666
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---------ccceeeecCCcchhhHHHHHHHHhc-
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---------KMNVREMYSRKPQLYRDRISEEFRA- 685 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg~ls~~~R~~i~~~F~~- 685 (848)
+..+.++.....+.+.+.....+.+|||.++.++.+..++.+... .+.|..+| +.++.++++.-..
T Consensus 232 ~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~ 307 (699)
T KOG0925|consen 232 PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK 307 (699)
T ss_pred CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc
Confidence 677777777777666666667889999999999998888887643 25788888 4444555443332
Q ss_pred --C--CceEEEecCCccccccCCCCCeeEEcCC------------------CCChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 686 --S--KRLILVTSDVSARGMDYPDVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 686 --G--~~~VLVaTdvl~rGlDip~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
| ..+|+|+|++++..+.+++|.+||.-++ |.|..+-.||.|||||. ++|.|+.+++.
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 2 3689999999999999999999997654 67889999999999994 69999999975
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=4.1e-21 Score=232.62 Aligned_cols=331 Identities=21% Similarity=0.213 Sum_probs=211.3
Q ss_pred CcHHHHHHHHHHhC---CC-CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 402 MTRVQEATLSACLE---GK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 402 ~t~iQ~~aI~~il~---g~-dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
.++.|..++..+++ .. .+++.||||+|||++.+++++..+..... ...+++++.|++.++.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 48889999988775 34 78899999999999999988876654211 123899999999999999999998
Q ss_pred HhhcCCCceEEEEeCCcchhHhh-------------hhhhcCCCcEEEeChHHHHHHHHhccCcc-cccCCccEEEEecc
Q 003100 478 LLKNHDGIGVLTLVGGTRFKVDQ-------------RRLESDPCQILVATPGRLLDHIENKSGLS-VRLMGLKMLVLDEA 543 (848)
Q Consensus 478 l~~~~~~i~v~~l~gg~~~~~~~-------------~~l~~~~~~IIV~TPgrLl~~L~~~~~~~-~~l~~l~~lVIDEA 543 (848)
.+...... .....+........ .........++++||-.+.........+. ...-..+++|+||+
T Consensus 269 ~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLFSVI-GKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhcccccc-cccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 77543211 11012221111000 00011124566666665554322222221 11123578999999
Q ss_pred cccccccchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHH
Q 003100 544 DHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQ 622 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~ 622 (848)
|.+.+..-...+..++..+. ....+|+||||+|..+.......+.....+..............+.+............
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 427 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQE 427 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhH
Confidence 99876532333333333332 36789999999999998887776654333322111000000001111100000000000
Q ss_pred HHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHh----cCCceEEEecCCcc
Q 003100 623 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR----ASKRLILVTSDVSA 698 (848)
Q Consensus 623 ~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~----~G~~~VLVaTdvl~ 698 (848)
.....+... ...+++++|.|||+..|..+|..|+..+.+++.+||.+...+|.+.+..+. .+...|+|||+|.+
T Consensus 428 ~~~~~~~~~--~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE 505 (733)
T COG1203 428 ELIELISEE--VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIE 505 (733)
T ss_pred hhhhcchhh--hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEE
Confidence 111112211 235689999999999999999999998778999999999999998887654 56789999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC--CCceEEEEeCcch
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEGEGVLLLAPWE 745 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G~~i~l~~~~e 745 (848)
.|+|+ +++++|-=-.| +.+.+||+||++|.| ..|..+++.....
T Consensus 506 agvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 506 AGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred EEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 99999 58888744444 789999999999999 5677777665443
No 111
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=8.7e-20 Score=200.04 Aligned_cols=353 Identities=20% Similarity=0.237 Sum_probs=251.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCCEEEEcCC-CCcc--hHHHHHHHHHHHHHhCC--------------------CCCCCCCC
Q 003100 398 GYIQMTRVQEATLSACLEGKDAVVKAKT-GTGK--SIAFLLPAIEAVLKATS--------------------SSTTQLVP 454 (848)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dvIv~a~T-GSGK--TlaflLPil~~l~~~~~--------------------~~~~~~~~ 454 (848)
.-.++|+.|.+.+..+.+.+|++..-.| +.|+ +-+|++.+|+|+++... ..++++.+
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457999999999999999999865333 4455 56799999999986311 12345677
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCCce--------EE----------------------EEeCCcc--------h
Q 003100 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIG--------VL----------------------TLVGGTR--------F 496 (848)
Q Consensus 455 ~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~--------v~----------------------~l~gg~~--------~ 496 (848)
.|+||||||+|+-|..+.+.+..++.....-. .. ++.|.++ +
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 89999999999999999999998864322100 00 0111111 1
Q ss_pred hHhhhhhhc--CCCcEEEeChHHHHHHHHhc---cCcccccCCccEEEEecccccccccchhhHHHHHHhc---Ccc---
Q 003100 497 KVDQRRLES--DPCQILVATPGRLLDHIENK---SGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL---PRR--- 565 (848)
Q Consensus 497 ~~~~~~l~~--~~~~IIV~TPgrLl~~L~~~---~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l---~~~--- 565 (848)
......+.+ ...||+||+|-.|..++.+. ..-...|++|.++|||.||.++... .+.+..|+..+ |.+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 011111111 14799999999999999843 2223457899999999999987543 45555665544 331
Q ss_pred ------------------ceeEEEeccCChHHHHHHHHHhccceEEEeecCCCc----ccccceeeccc-------ccCC
Q 003100 566 ------------------RQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGS----VETPVKIKQSC-------LVAP 616 (848)
Q Consensus 566 ------------------~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~----~~~~~~v~q~~-------~~~~ 616 (848)
+|+++||+-.......+....|.+..-.+....... ......+.|.+ +...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 699999999988888888777765332222111111 11222233322 3344
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
.+.+|.++...|...+.......||||+|+.-+..++.+++++..+.+..+|...++.+-.++...|..|...||+.|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 67788888777766665556678999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--ccccCCCCCeeEEcCCCCChhHH---HHHhhccCCCCC----CceEEEEeCcchhhHHHH
Q 003100 697 SA--RGMDYPDVTSVVQVGIPPDREQY---IHRLGRTGREGK----EGEGVLLLAPWEEYFLDD 751 (848)
Q Consensus 697 l~--rGlDip~V~~VI~yd~P~s~~~y---iQRiGRaGR~G~----~G~~i~l~~~~e~~~l~~ 751 (848)
+. |..+|.+|+.||.|.+|.++..| +.+.+|+.-.|+ .-.|.++++..|.--+..
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 87 88999999999999999999877 566677654332 346888888777544433
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=3.7e-19 Score=219.67 Aligned_cols=335 Identities=20% Similarity=0.278 Sum_probs=206.2
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 387 SPLTIKALTAAGYIQMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~----~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
++...+.+...||. +++.|.+.+. .+.+++++++.||||+|||++|++|++..+. . +.+++|.+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------~~~vvi~t 299 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------EKPVVIST 299 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------CCeEEEEe
Confidence 44667778788998 8999998665 5557899999999999999999999987654 1 12699999
Q ss_pred CcHHHHHHHHH-HHHHHhhcCC-CceEEEEeCCcchhH---------------hh-------------------------
Q 003100 463 PTRELASQIAA-EAIALLKNHD-GIGVLTLVGGTRFKV---------------DQ------------------------- 500 (848)
Q Consensus 463 PTreLa~Qi~~-~l~~l~~~~~-~i~v~~l~gg~~~~~---------------~~------------------------- 500 (848)
||++|..|+.. ++..+.+..+ .+.+.++.|+.++-- ..
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999876 3443332221 366666665543200 00
Q ss_pred -------hhh-----------------------hcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc
Q 003100 501 -------RRL-----------------------ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550 (848)
Q Consensus 501 -------~~l-----------------------~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g 550 (848)
..+ ....++|||+....|+..+.... ..+....++||||||++.+.-
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHH
Confidence 000 00147899999998888775442 124566899999999974310
Q ss_pred -------c-----hhh----------------------------------------------------------------
Q 003100 551 -------F-----RKD---------------------------------------------------------------- 554 (848)
Q Consensus 551 -------f-----~~~---------------------------------------------------------------- 554 (848)
+ ...
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 000
Q ss_pred HHHHHHh-----------c-------------------------------------CccceeEEEeccCCh--HHHHHHH
Q 003100 555 VENIVDC-----------L-------------------------------------PRRRQSLLFSATMPK--EVRRISQ 584 (848)
Q Consensus 555 l~~Il~~-----------l-------------------------------------~~~~Q~ll~SATl~~--~v~~l~~ 584 (848)
+...+.. + ++...+|++|||++. ....+.+
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000000 0 001357899999963 2333333
Q ss_pred HHhccceEEEeecCCCcccccce-eeccccc----------CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHH
Q 003100 585 LVLKREHTYIDTVGLGSVETPVK-IKQSCLV----------APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLL 653 (848)
Q Consensus 585 ~~l~~~~~~i~~~~~~~~~~~~~-v~q~~~~----------~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l 653 (848)
.+.-....+.... ..+.. .++..+. ...+.....+...|...+.. ..+++||||+|....+.+
T Consensus 617 ~lGl~~~~~~~~~-----~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v 690 (850)
T TIGR01407 617 LLGLTDVHFNTIE-----PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMV 690 (850)
T ss_pred hcCCCccccceec-----CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHH
Confidence 3221111111110 01111 0011000 11223334555555554433 457999999999999999
Q ss_pred HHHHHHhc--cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCC--eeEEcCCCCC------------
Q 003100 654 YLLLREMK--MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT--SVVQVGIPPD------------ 717 (848)
Q Consensus 654 ~~~L~~~~--~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~--~VI~yd~P~s------------ 717 (848)
+..|.... .....+..+.. ..|..+++.|++++..||++|+.+++|||+|+.. +||...+|..
T Consensus 691 ~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~ 769 (850)
T TIGR01407 691 YDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQ 769 (850)
T ss_pred HHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHH
Confidence 99997521 12223333333 5789999999999999999999999999999977 4677776631
Q ss_pred ------------------hhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 718 ------------------REQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 718 ------------------~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
...+.|.+||.-|....--+++++..
T Consensus 770 ~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 770 KLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 12346999999997754434555544
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.5e-19 Score=208.46 Aligned_cols=282 Identities=22% Similarity=0.265 Sum_probs=196.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|| .|+..|+--...++.|+..-+.||||.|||.- .+.+- ++-+.. |-+++||+||+.|+.|+++.+.
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~s--l~~a~k--------gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMS--LYLAKK--------GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHH--HHHHhc--------CCeEEEEecCHHHHHHHHHHHH
Confidence 355 79999999999999999999999999999984 33222 222211 2379999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCc-ch---hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc---
Q 003100 477 ALLKNHDGIGVLTLVGGT-RF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL--- 549 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~-~~---~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~--- 549 (848)
++.....+..+.+.+.+. .. .....++.++.++|+|+|..-|...+..-.. -++++|++|.+|.++-.
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-----~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-----LKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-----cCCCEEEEccHHHHHhcccc
Confidence 998665445554433332 22 2344567778899999998888776654321 36899999999987643
Q ss_pred --------cchhhH-------HHHHHhc------------------------CccceeEEEeccCChH--HHHHHHHHhc
Q 003100 550 --------GFRKDV-------ENIVDCL------------------------PRRRQSLLFSATMPKE--VRRISQLVLK 588 (848)
Q Consensus 550 --------gf~~~l-------~~Il~~l------------------------~~~~Q~ll~SATl~~~--v~~l~~~~l~ 588 (848)
||.... ..+...+ .+.-++++.|||..+. -..+.+.++.
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 233221 1111111 1235789999998542 2234444444
Q ss_pred cceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEec---chHHHHHHHHHHHhcccee
Q 003100 589 REHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCST---GMVTSLLYLLLREMKMNVR 665 (848)
Q Consensus 589 ~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s---~~~a~~l~~~L~~~~~~v~ 665 (848)
..+-- . .....++...|+.. .....+..+++.. +...|||++. .+.++.++++|+..|+++.
T Consensus 302 FevG~------~-~~~LRNIvD~y~~~---~~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~ 366 (1187)
T COG1110 302 FEVGS------G-GEGLRNIVDIYVES---ESLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSHGINAE 366 (1187)
T ss_pred CccCc------c-chhhhheeeeeccC---ccHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEE
Confidence 32211 1 11222333333333 3344455566553 4589999999 9999999999999999999
Q ss_pred eecCCcchhhHHHHHHHHhcCCceEEEec----CCccccccCCC-CCeeEEcCCC
Q 003100 666 EMYSRKPQLYRDRISEEFRASKRLILVTS----DVSARGMDYPD-VTSVVQVGIP 715 (848)
Q Consensus 666 ~lhg~ls~~~R~~i~~~F~~G~~~VLVaT----dvl~rGlDip~-V~~VI~yd~P 715 (848)
.+|+. ....++.|..|+++|||.+ .++-||||+|. ++++|.|++|
T Consensus 367 ~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 367 LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred Eeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99984 3788999999999999976 57899999997 7899999988
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=8.4e-20 Score=216.99 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=114.1
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
.....|+..+...+..... .+.++||||+|+..++.+...|...++.+..+|+ .+.+|+..+..|+.+...|+|||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~--~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQK--KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhh--CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3455688888888766442 4679999999999999999999999999999997 58899999999999999999999
Q ss_pred CCccccccCC---CCCe-----eEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 695 DVSARGMDYP---DVTS-----VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 695 dvl~rGlDip---~V~~-----VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
++++||+||+ +|.. ||++..|.+...|.||+|||||.|.+|.+++|++..|.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999 5654 48999999999999999999999999999999998774
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=2.7e-19 Score=212.69 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..++..+...|.... ..+.++||||+|+..++.++..|...++.+..+||++++.+|..++..|+.|++.|||||+++
T Consensus 425 ~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChh
Confidence 345556666666544 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcC-----CCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 698 ARGMDYPDVTSVVQVG-----IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd-----~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
++|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+...+......|.
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 9999999999999988 799999999999999997 689999999887655554443
No 116
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=5.8e-19 Score=200.65 Aligned_cols=322 Identities=15% Similarity=0.220 Sum_probs=221.6
Q ss_pred CCcHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~----g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|++||.+.+.++.+ |-++|+...+|-|||+. .|..+.++..... .+| .-||+||...| ..|.+++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~------~~G-PfLVi~P~StL-~NW~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG------IPG-PFLVIAPKSTL-DNWMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC------CCC-CeEEEeeHhhH-HHHHHHHH
Confidence 589999999988764 77899999999999998 6666666654221 112 26899998877 44566666
Q ss_pred HHhhcCCCceEEEEeCCcchhHhh--hhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~--~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
++ .|++.+.+++|+..-.... ..+..+..+|+|+|+++.+..-. .+.--.++||||||||++-+. ...
T Consensus 238 rf---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~--~s~ 307 (971)
T KOG0385|consen 238 RF---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNE--KSK 307 (971)
T ss_pred Hh---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcch--hhH
Confidence 65 5789999999987543322 23344579999999999875421 122346899999999999775 345
Q ss_pred HHHHHHhcCccceeEEEeccC-ChHHHHHHHHH---h-------------------------------------------
Q 003100 555 VENIVDCLPRRRQSLLFSATM-PKEVRRISQLV---L------------------------------------------- 587 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl-~~~v~~l~~~~---l------------------------------------------- 587 (848)
+..++..+....+ +|+|.|+ -+++..+...+ +
T Consensus 308 L~~~lr~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 308 LSKILREFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHHHHhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 5566666554433 5556664 22222211110 0
Q ss_pred ------ccceEEEeecCCCc-------------------ccc--cce-----------eecccc---------------c
Q 003100 588 ------KREHTYIDTVGLGS-------------------VET--PVK-----------IKQSCL---------------V 614 (848)
Q Consensus 588 ------~~~~~~i~~~~~~~-------------------~~~--~~~-----------v~q~~~---------------~ 614 (848)
.....++-.++... ... ... ..+.|+ .
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 00000000000000 000 000 000000 1
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC---ceEE
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK---RLIL 691 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~---~~VL 691 (848)
+....|+.+|..+|.... ..+++||||..-..+.+.|..++.-.++.++.+.|.++-.+|...++.|.... .-+|
T Consensus 467 v~nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HhcCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 123446667777777654 35789999999999999999998888999999999999999999999998644 4568
Q ss_pred EecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCc--eEEEEeCcc
Q 003100 692 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EGVLLLAPW 744 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~i~l~~~~ 744 (848)
++|.+++.|||+...++||.||.-++|+.-+|..-||.|.|+.. .++.|++..
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999754 566677753
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=3e-18 Score=202.21 Aligned_cols=324 Identities=20% Similarity=0.215 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHHhCC----CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g----~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.+.+.|..++..|.+. ...++.+.||||||.+|+=.+- ..+..+ -.+|||+|-.+|..|+.++|.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~-~~L~~G----------kqvLvLVPEI~Ltpq~~~rf~ 266 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIA-KVLAQG----------KQVLVLVPEIALTPQLLARFK 266 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHH-HHHHcC----------CEEEEEeccccchHHHHHHHH
Confidence 5788999999988765 6789999999999999765544 444432 269999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchh---HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc---c
Q 003100 477 ALLKNHDGIGVLTLVGGTRFK---VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL---G 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~---~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~---g 550 (848)
..++ ..+..+.++.+.. ........+...|||+|= +.....+.++.+|||||-|.-... +
T Consensus 267 ~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR----------SAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 267 ARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR----------SALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEec----------hhhcCchhhccEEEEeccccccccCCcC
Confidence 9985 3455555554433 344555667899999992 233466889999999999975422 2
Q ss_pred chhhHHH--HHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhh----HHHHH
Q 003100 551 FRKDVEN--IVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHEL----HFQIL 624 (848)
Q Consensus 551 f~~~l~~--Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~----k~~~L 624 (848)
.+-+... ++..-..++++|+-|||..-+-...+.. . .+..+..........+..+........... --..|
T Consensus 333 prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~--g-~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~L 409 (730)
T COG1198 333 PRYHARDVAVLRAKKENAPVVLGSATPSLESYANAES--G-KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPAL 409 (730)
T ss_pred CCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhc--C-ceEEEEccccccccCCCcceEEeccccccccCccCCHHH
Confidence 2222222 3333345789999999976543333311 1 122221111111000111111000000000 11344
Q ss_pred HHHHHHHhhCCCCceEEEEEecchH-------------------------------------------------------
Q 003100 625 HHLLKEHILGTPDYKVIVFCSTGMV------------------------------------------------------- 649 (848)
Q Consensus 625 ~~lL~~~~~~~~~~kiLVF~~s~~~------------------------------------------------------- 649 (848)
.+.+.+.+. .+.++|+|+|.+--
T Consensus 410 l~~i~~~l~--~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 410 LEAIRKTLE--RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHh--cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 555555443 35677777554321
Q ss_pred -----HHHHHHHHHHh--ccceeeecCCcchhh--HHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCC-----
Q 003100 650 -----TSLLYLLLREM--KMNVREMYSRKPQLY--RDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP----- 715 (848)
Q Consensus 650 -----a~~l~~~L~~~--~~~v~~lhg~ls~~~--R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P----- 715 (848)
++++.+.|... +..+..+.++.+..+ -...+..|.+|+.+|||.|.+++.|.|+|+|++|...|.-
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 12333333333 346677777765433 4577899999999999999999999999999998765542
Q ss_pred -------CChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 716 -------PDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 716 -------~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
.....+.|-+|||||.+.+|.+++-...-+-+.++.+..
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 245677899999999999999998877666555555544
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3e-19 Score=196.22 Aligned_cols=350 Identities=13% Similarity=0.118 Sum_probs=246.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHH
Q 003100 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (848)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~ 469 (848)
+.+.+..+.-+..+.+|.++|..+.+|+++++.-.|.+||.++|.+.++..+...... -.+++.||.+++.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s---------~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT---------NSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc---------ceecchhHHHHhh
Confidence 3445556777788999999999999999999999999999999999988776654322 3689999999987
Q ss_pred HHHHHHHHHhhcCCCce--EEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHH-HHhccCcccccCCccEEEEeccccc
Q 003100 470 QIAAEAIALLKNHDGIG--VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH-IENKSGLSVRLMGLKMLVLDEADHL 546 (848)
Q Consensus 470 Qi~~~l~~l~~~~~~i~--v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~-L~~~~~~~~~l~~l~~lVIDEAH~l 546 (848)
...+-+.-.+...+... +.-.+.+ ........+.+.+.+++++.|.++... |.+...+...+-...++++||+|.+
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~-~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDK-LSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccC-CCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 65433221111111111 1122222 223355666677789999999988654 4444334444556678999999987
Q ss_pred ccccchh----hHHHHHHhc-----CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 547 LDLGFRK----DVENIVDCL-----PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 547 l~~gf~~----~l~~Il~~l-----~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
+-. |.. ++..++..+ ....|++-.|||+...++.....+.-+....+...+.........+.........
T Consensus 425 ~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150|consen 425 LFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred ecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcc
Confidence 643 333 333333322 2367999999999888887776666566666665554443333323222222111
Q ss_pred ----hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc--------cceeeecCCcchhhHHHHHHHHhc
Q 003100 618 ----ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK--------MNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 618 ----~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~--------~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
+.+.....+++.+.+. .+-++|-||++++.|+.+....+..- -.+..+.|+....+|.++....-.
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 2233334445544443 35699999999999998876655431 246788899999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEe--CcchhhHHHHh
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL--APWEEYFLDDL 752 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~--~~~e~~~l~~L 752 (848)
|+..-+|+|++++.||||...+.|+++++|.|.+.+.|..|||||.+++..++.+. .|-|++|+..-
T Consensus 582 G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP 650 (1034)
T KOG4150|consen 582 GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHP 650 (1034)
T ss_pred CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999887766554 47788887643
No 119
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.82 E-value=3.5e-18 Score=191.35 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=222.4
Q ss_pred CCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCce----EEEEeC--------------CcchhHhhhhhhcC--
Q 003100 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG----VLTLVG--------------GTRFKVDQRRLESD-- 506 (848)
Q Consensus 447 ~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~----v~~l~g--------------g~~~~~~~~~l~~~-- 506 (848)
..++++.+.++||||+|+|..|.++.+.+.+++.....+. ...-+| ......+...+..+
T Consensus 29 ~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~ 108 (442)
T PF06862_consen 29 EFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNN 108 (442)
T ss_pred hhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCc
Confidence 4466788899999999999999999999888864310000 000000 00111122222111
Q ss_pred ----------------------CCcEEEeChHHHHHHHHh---ccCcccccCCccEEEEecccccc--cccchhhHHHHH
Q 003100 507 ----------------------PCQILVATPGRLLDHIEN---KSGLSVRLMGLKMLVLDEADHLL--DLGFRKDVENIV 559 (848)
Q Consensus 507 ----------------------~~~IIV~TPgrLl~~L~~---~~~~~~~l~~l~~lVIDEAH~ll--~~gf~~~l~~Il 559 (848)
.+|||||+|-.|...+.. .......|++|+++|||.||.|+ +|.+...+...+
T Consensus 109 DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~l 188 (442)
T PF06862_consen 109 DDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHL 188 (442)
T ss_pred cceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHh
Confidence 579999999999998885 22223458999999999999876 344444444444
Q ss_pred HhcCc---------------------cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCc-----ccccceeecccc
Q 003100 560 DCLPR---------------------RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGS-----VETPVKIKQSCL 613 (848)
Q Consensus 560 ~~l~~---------------------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~-----~~~~~~v~q~~~ 613 (848)
+.+|+ -+|+|++|+..++++..+....+.+..-.+....... ......++|.+.
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 45553 2799999999999999998887665433322211111 223445556554
Q ss_pred cC-------ChhhHHHHHHHHHHHHhh-CCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc
Q 003100 614 VA-------PHELHFQILHHLLKEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 614 ~~-------~~~~k~~~L~~lL~~~~~-~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
.. ..+.++.++..-+...+. .....++|||++|.-+-.++.++|++.++.++.+|...++.+-.++...|..
T Consensus 269 r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~ 348 (442)
T PF06862_consen 269 RFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH 348 (442)
T ss_pred EecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc
Confidence 32 346677777765555555 5567899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCcc--ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCC------CceEEEEeCcchhhHHHHh
Q 003100 686 SKRLILVTSDVSA--RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK------EGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 686 G~~~VLVaTdvl~--rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~------~G~~i~l~~~~e~~~l~~L 752 (848)
|+..||+.|..+. +-..|.+|+.||.|++|..+..|-..+.-.+.... ...|.++++..|..-++.|
T Consensus 349 G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 349 GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999887 88999999999999999999999887765544332 5789999999987766655
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.81 E-value=7.4e-18 Score=201.72 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.++..+...|.... ..+.++||||+|...++.++..|...++.+..+||++++.+|..++..|+.|.+.|||||++++
T Consensus 430 ~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 430 GQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 34556666666544 2467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCC-----CCChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 699 RGMDYPDVTSVVQVGI-----PPDREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 699 rGlDip~V~~VI~yd~-----P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
+|+|+|++++||+++. |.+..+|+||+|||||. ..|.|++|+...
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 9999999999999885 78999999999999995 789999999854
No 121
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=5.8e-18 Score=193.64 Aligned_cols=321 Identities=17% Similarity=0.209 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~----g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.++|+.++.++.+ +...|+...+|-|||+. ++..|..|.....- . -.+|||||. .+..||..++.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~------~-~paLIVCP~-Tii~qW~~E~~ 275 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL------T-KPALIVCPA-TIIHQWMKEFQ 275 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc------c-CceEEEccH-HHHHHHHHHHH
Confidence 468999999988764 56789999999999997 44455555544211 1 159999996 67788888888
Q ss_pred HHhhcCCCceEEEEeCCcchh------------HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 477 ALLKNHDGIGVLTLVGGTRFK------------VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~------------~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
.+. +.+.|.++++..... ...........+|+|+|+..+.-. . . .+.-..++++|+||.|
T Consensus 276 ~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~-d---~l~~~~W~y~ILDEGH 347 (923)
T KOG0387|consen 276 TWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-G-D---DLLGILWDYVILDEGH 347 (923)
T ss_pred HhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-C-c---ccccccccEEEecCcc
Confidence 774 567888888765521 001111122357999998876432 1 1 1223468999999999
Q ss_pred ccccccchhhHHHHHHhcCccceeEEEeccC-ChHHHHHHHHH-------------hccc-eEEEeecCCCc--------
Q 003100 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATM-PKEVRRISQLV-------------LKRE-HTYIDTVGLGS-------- 601 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl-~~~v~~l~~~~-------------l~~~-~~~i~~~~~~~-------- 601 (848)
++-+.. ..+...+..++. .+.|++|.|+ -+.+.++...+ +... ...|..-+..+
T Consensus 348 ~IrNpn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ 424 (923)
T KOG0387|consen 348 RIRNPN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQT 424 (923)
T ss_pred cccCCc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHH
Confidence 997753 444444555543 3445667764 33333332221 0000 00010000000
Q ss_pred -----------------------------------------------------------------ccc------------
Q 003100 602 -----------------------------------------------------------------VET------------ 604 (848)
Q Consensus 602 -----------------------------------------------------------------~~~------------ 604 (848)
...
T Consensus 425 aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn 504 (923)
T KOG0387|consen 425 AYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICN 504 (923)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcC
Confidence 000
Q ss_pred -cc-------eeecc--c-ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH-HhccceeeecCCcc
Q 003100 605 -PV-------KIKQS--C-LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR-EMKMNVREMYSRKP 672 (848)
Q Consensus 605 -~~-------~v~q~--~-~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~-~~~~~v~~lhg~ls 672 (848)
|. ...+. + -......|...+..+|..... .+.++|+|..++.+...|...|. ..++.++.+.|..+
T Consensus 505 HPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k--qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 505 HPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK--QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred CcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh--CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 00 00000 0 001123466777788877664 45699999999999999999998 57999999999999
Q ss_pred hhhHHHHHHHHhcCCc--eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCce--EEEEeCc
Q 003100 673 QLYRDRISEEFRASKR--LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE--GVLLLAP 743 (848)
Q Consensus 673 ~~~R~~i~~~F~~G~~--~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~--~i~l~~~ 743 (848)
...|..++++|.++.. -+|++|.|.+.|+|+.+.+-||.||+-|+|+.-.|..-||.|.|+.-. +|.|++.
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999997763 458899999999999999999999999999999999999999997543 4455654
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=1.5e-18 Score=200.86 Aligned_cols=304 Identities=19% Similarity=0.164 Sum_probs=199.7
Q ss_pred CCCcHHHHHHHHHHh----CC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACL----EG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il----~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
..++.+|..||..+. .| +.+++++.||+|||.. .+.++..|++..... ++|+|+-+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~K--------RVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVK--------RVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhh--------eeeEEechHHHHHHHHHH
Confidence 358999999986654 34 4589999999999998 667888888776543 799999999999999988
Q ss_pred HHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC--cccccCCccEEEEecccccccccch
Q 003100 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG--LSVRLMGLKMLVLDEADHLLDLGFR 552 (848)
Q Consensus 475 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~--~~~~l~~l~~lVIDEAH~ll~~gf~ 552 (848)
+..++... .....+.+.... ..+.|.|+|...+...+..... ..+....+++|||||||+ |..
T Consensus 235 f~~~~P~~---~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~ 299 (875)
T COG4096 235 FEDFLPFG---TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIY 299 (875)
T ss_pred HHHhCCCc---cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHH
Confidence 88876543 233333222221 1379999999999887765422 123344589999999999 344
Q ss_pred hhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh-c-----------------cceEEEeec--CCCccccccee----
Q 003100 553 KDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL-K-----------------REHTYIDTV--GLGSVETPVKI---- 608 (848)
Q Consensus 553 ~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l-~-----------------~~~~~i~~~--~~~~~~~~~~v---- 608 (848)
..+..|+.++..-.|. +|||+...+..-.-.++ . .++..+.+. -......+...
T Consensus 300 ~~~~~I~dYFdA~~~g--LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~sere 377 (875)
T COG4096 300 SEWSSILDYFDAATQG--LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSERE 377 (875)
T ss_pred hhhHHHHHHHHHHHHh--hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhh
Confidence 4555777776544433 39998664332111122 1 111111110 00000000000
Q ss_pred ----------ecccccCC------hhhHHHHHHHHHHHHhhC--CC--CceEEEEEecchHHHHHHHHHHHh-----ccc
Q 003100 609 ----------KQSCLVAP------HELHFQILHHLLKEHILG--TP--DYKVIVFCSTGMVTSLLYLLLREM-----KMN 663 (848)
Q Consensus 609 ----------~q~~~~~~------~~~k~~~L~~lL~~~~~~--~~--~~kiLVF~~s~~~a~~l~~~L~~~-----~~~ 663 (848)
.+.+-..+ .......+...|...+.. .. ..|+||||.+..+|+.+...|... +--
T Consensus 378 k~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 378 KLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 00110111 112335566666666554 11 459999999999999999999875 234
Q ss_pred eeeecCCcchhhHHHHHHHHhc--CCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCC
Q 003100 664 VREMYSRKPQLYRDRISEEFRA--SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 731 (848)
Q Consensus 664 v~~lhg~ls~~~R~~i~~~F~~--G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 731 (848)
+..+.|+-.+. ...++.|.. .--.|.|+.+++..|||+|.|.++|.+-.-.|..-|.|++||+-|.
T Consensus 458 a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 458 AMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 66777775543 344566654 3367999999999999999999999999999999999999999884
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=4e-18 Score=197.44 Aligned_cols=163 Identities=21% Similarity=0.246 Sum_probs=119.7
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
|-.+|.+.+..+-.+..++|+|||.+|||.+ ..-+++.+++..... .+|+++||++|+.|+...+...+..
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~~--------VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDSD--------VVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCCC--------EEEEecchHHHhhhhhHHHHHhhcc
Confidence 7789999999999999999999999999996 455667777654332 6899999999999999988887744
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHh
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC 561 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~ 561 (848)
..-.....+.|.-....... .-.|+|+|+-|+.|-.+|-..........+++++|+||+|.+-...-.-.+++++..
T Consensus 583 ~t~~rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred CccccchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 33333333444333222222 224899999999998888763222344678999999999998765544455566655
Q ss_pred cCccceeEEEeccCChH
Q 003100 562 LPRRRQSLLFSATMPKE 578 (848)
Q Consensus 562 l~~~~Q~ll~SATl~~~ 578 (848)
+ .+.++.+|||+.+.
T Consensus 660 i--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 660 I--PCPFLVLSATIGNP 674 (1330)
T ss_pred c--CCCeeEEecccCCH
Confidence 5 47899999998653
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=2.3e-17 Score=198.25 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=178.2
Q ss_pred CcHHHHHHHHHHh----C------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 402 MTRVQEATLSACL----E------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 402 ~t~iQ~~aI~~il----~------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
++++|..|+..+. . .+..+++.+||||||++.+. ++..++... ...++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~-la~~l~~~~--------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF-AARKALELL--------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH-HHHHHHhhc--------CCCeEEEEECcHHHHHHH
Confidence 6888988887653 2 25789999999999997444 334444321 124799999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc-cEEEEeccccccccc
Q 003100 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL-KMLVLDEADHLLDLG 550 (848)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l-~~lVIDEAH~ll~~g 550 (848)
.+.+..+.... . .+..+...-...+......|+|+|.+.|...+..... ......- -+||+||||+....
T Consensus 310 ~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 310 MKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-ccCCCCCCEEEEEEcCccccch-
Confidence 99998875311 0 1111122122233334468999999999865433210 0111111 28999999996432
Q ss_pred chhhHHHHH-HhcCccceeEEEeccCChHHHH-HHHHHhc--cceEEEee----cCCCcc------ccc-------ce--
Q 003100 551 FRKDVENIV-DCLPRRRQSLLFSATMPKEVRR-ISQLVLK--REHTYIDT----VGLGSV------ETP-------VK-- 607 (848)
Q Consensus 551 f~~~l~~Il-~~l~~~~Q~ll~SATl~~~v~~-l~~~~l~--~~~~~i~~----~~~~~~------~~~-------~~-- 607 (848)
.+..++ ..+ ++...++||||+-..... -...+.. ..+..... +..+.. ... ..
T Consensus 381 ---~~~~~l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~ 456 (667)
T TIGR00348 381 ---ELAKNLKKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLD 456 (667)
T ss_pred ---HHHHHHHhhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHH
Confidence 233444 344 356799999998432100 0011100 00000000 000000 000 00
Q ss_pred --eeccccc-----------------------CChhhHHHHHHHHHHHHhh---CCCCceEEEEEecchHHHHHHHHHHH
Q 003100 608 --IKQSCLV-----------------------APHELHFQILHHLLKEHIL---GTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 608 --v~q~~~~-----------------------~~~~~k~~~L~~lL~~~~~---~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
+...+.. .........+...+.+++. ....++++|||.++..|..++..|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 457 AFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHh
Confidence 0000000 0001111222222222321 12247999999999999999999876
Q ss_pred h-----ccceeeecCCcchh---------------------hHHHHHHHHhc-CCceEEEecCCccccccCCCCCeeEEc
Q 003100 660 M-----KMNVREMYSRKPQL---------------------YRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTSVVQV 712 (848)
Q Consensus 660 ~-----~~~v~~lhg~ls~~---------------------~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~V~~VI~y 712 (848)
. +.....+++..... ....++++|+. +..+|||.++++..|+|.|.+.+++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 5 23455666554322 12468889976 678999999999999999999998865
Q ss_pred CCCCChhHHHHHhhccCCC
Q 003100 713 GIPPDREQYIHRLGRTGRE 731 (848)
Q Consensus 713 d~P~s~~~yiQRiGRaGR~ 731 (848)
-+-. ...++|.+||+.|.
T Consensus 617 Kplk-~h~LlQai~R~nR~ 634 (667)
T TIGR00348 617 KPLK-YHGLLQAIARTNRI 634 (667)
T ss_pred cccc-ccHHHHHHHHhccc
Confidence 5444 45789999999994
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=2.6e-16 Score=183.03 Aligned_cols=320 Identities=18% Similarity=0.164 Sum_probs=213.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.. |+++|.-+.-.++.|+ |+.+.||+|||++..+|++...+.+. .+.|++|+--||.|-++++.
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~-----------~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR-----------RVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC-----------CeEEEcCCHHHHHHHHHHHH
Confidence 4544 8899998888888774 77999999999999999986665432 58899999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccC---cccccCCccEEEEecccccc-cc--
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DL-- 549 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~---~~~~l~~l~~lVIDEAH~ll-~~-- 549 (848)
.++... ++.+.+++++.........+ .|+|+++|..-| .++|..+.. .......+.+.||||+|.++ |.
T Consensus 141 ~ly~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 141 PLYEAL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred HHHHhc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 999875 89999998887655333333 389999998765 233332210 01224568899999999864 11
Q ss_pred ------------cchhhHHHHHHhcCcc--------c-------------------------------------------
Q 003100 550 ------------GFRKDVENIVDCLPRR--------R------------------------------------------- 566 (848)
Q Consensus 550 ------------gf~~~l~~Il~~l~~~--------~------------------------------------------- 566 (848)
.....+..++..+... .
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 0111122222222211 1
Q ss_pred -------------------------------------------------------------------eeEEEeccCChHH
Q 003100 567 -------------------------------------------------------------------QSLLFSATMPKEV 579 (848)
Q Consensus 567 -------------------------------------------------------------------Q~ll~SATl~~~v 579 (848)
.+.+||.|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 1223333333222
Q ss_pred HHHHHHHhccceEEEeecCCCcccccce--eecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHH
Q 003100 580 RRISQLVLKREHTYIDTVGLGSVETPVK--IKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 657 (848)
Q Consensus 580 ~~l~~~~l~~~~~~i~~~~~~~~~~~~~--v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L 657 (848)
..+.+.+-- +...|.+. .|.. -....++.....|+..+..-+...+ ..+.+|||.|.|....+.+...|
T Consensus 377 ~Ef~~iY~l-~Vv~IPtn------kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L 447 (764)
T PRK12326 377 EQLRQFYDL-GVSVIPPN------KPNIREDEADRVYATAAEKNDAIVEHIAEVH--ETGQPVLVGTHDVAESEELAERL 447 (764)
T ss_pred HHHHHHhCC-cEEECCCC------CCceeecCCCceEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHH
Confidence 222222211 11111100 0000 0011233445566766666665544 25679999999999999999999
Q ss_pred HHhccceeeecCCcchhhHHHHHHHHhcCC-ceEEEecCCccccccCCC---------------CCeeEEcCCCCChhHH
Q 003100 658 REMKMNVREMYSRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDYPD---------------VTSVVQVGIPPDREQY 721 (848)
Q Consensus 658 ~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~VLVaTdvl~rGlDip~---------------V~~VI~yd~P~s~~~y 721 (848)
.+.+++...+++.-.. ++.-+-. ..|+ -.|.|||++++||.||.= ==+||....+.|..--
T Consensus 448 ~~~gI~h~vLNAk~~~--~EA~IIa-~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID 524 (764)
T PRK12326 448 RAAGVPAVVLNAKNDA--EEARIIA-EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLD 524 (764)
T ss_pred HhCCCcceeeccCchH--hHHHHHH-hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHH
Confidence 9999999999987443 3222211 2454 569999999999999962 1278989999999999
Q ss_pred HHHhhccCCCCCCceEEEEeCcchh
Q 003100 722 IHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 722 iQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
-|-.|||||.|.+|.+-.|++-.|.
T Consensus 525 ~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 525 NQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHHhcccccCCCCCceeEEEEcchh
Confidence 9999999999999999999987664
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=9.1e-17 Score=196.28 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=193.5
Q ss_pred HcCCCCCcHHHHHHHHH----HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~----il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
-.||+ .++.|.+.... +.+++.+++.|+||+|||++|++|++.... +.++||++||++|+.|+
T Consensus 241 ~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~------------~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 241 LLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD------------QRQIIVSVPTKILQDQI 307 (820)
T ss_pred cCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC------------CCcEEEEeCcHHHHHHH
Confidence 34665 89999885443 445788999999999999999999886431 23699999999999999
Q ss_pred H-HHHHHHhhcCCCceEEEEeCCcchhHhh-----------------------------------------------hhh
Q 003100 472 A-AEAIALLKNHDGIGVLTLVGGTRFKVDQ-----------------------------------------------RRL 503 (848)
Q Consensus 472 ~-~~l~~l~~~~~~i~v~~l~gg~~~~~~~-----------------------------------------------~~l 503 (848)
. ..+..+.+. .++.+.++.|+.++--.. ..+
T Consensus 308 ~~~~i~~l~~~-~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 308 MAEEVKAIQEV-FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHh-cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 5 555555443 356666666654321000 000
Q ss_pred -----------------------hcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-----c----
Q 003100 504 -----------------------ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-----F---- 551 (848)
Q Consensus 504 -----------------------~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-----f---- 551 (848)
....++|||+..-.|+..+.... .+...+++||||||++.+.. .
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~ 462 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNI 462 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecH
Confidence 00146899999988887775442 24678999999999975311 0
Q ss_pred ---hh--------------------------------------------------hHHHH-----------HHh------
Q 003100 552 ---RK--------------------------------------------------DVENI-----------VDC------ 561 (848)
Q Consensus 552 ---~~--------------------------------------------------~l~~I-----------l~~------ 561 (848)
.. .+..+ +..
T Consensus 463 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W 542 (820)
T PRK07246 463 TSFLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYW 542 (820)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 00 00000 000
Q ss_pred c---------------------------CccceeEEEeccCC--hHHHHHHHHHhccceEEEeecCCCcccc-cceeecc
Q 003100 562 L---------------------------PRRRQSLLFSATMP--KEVRRISQLVLKREHTYIDTVGLGSVET-PVKIKQS 611 (848)
Q Consensus 562 l---------------------------~~~~Q~ll~SATl~--~~v~~l~~~~l~~~~~~i~~~~~~~~~~-~~~v~q~ 611 (848)
+ +....+|++|||++ +.. .+...+.-....... ........ ..-+...
T Consensus 543 ~e~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~-~~~~~~~~~~~~i~~~ 620 (820)
T PRK07246 543 LESEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHK-IEKDKKQDQLVVVDQD 620 (820)
T ss_pred EEecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceec-CCCChHHccEEEeCCC
Confidence 0 00135688899985 222 233222211111111 00000000 0000000
Q ss_pred cc---cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCc
Q 003100 612 CL---VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR 688 (848)
Q Consensus 612 ~~---~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~ 688 (848)
.. ....+.....+...+.... ..++++||+++|....+.++..|....+.+ ...|... .+..++++|+++..
T Consensus 621 ~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 621 MPLVTETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 00 0112334445666665544 356899999999999999999997654444 3333221 35678999999989
Q ss_pred eEEEecCCccccccCCC--CCeeEEcCCCC----C--------------------------hhHHHHHhhccCCCCC-Cc
Q 003100 689 LILVTSDVSARGMDYPD--VTSVVQVGIPP----D--------------------------REQYIHRLGRTGREGK-EG 735 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip~--V~~VI~yd~P~----s--------------------------~~~yiQRiGRaGR~G~-~G 735 (848)
.||++|..+..|||+|+ ...||...+|. + ...+.|-+||.-|... .|
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999984 55667777662 1 2235699999999765 45
Q ss_pred eEEEEeCc
Q 003100 736 EGVLLLAP 743 (848)
Q Consensus 736 ~~i~l~~~ 743 (848)
. ++++.+
T Consensus 776 v-v~ilD~ 782 (820)
T PRK07246 776 A-VLILDR 782 (820)
T ss_pred E-EEEECC
Confidence 4 444444
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.77 E-value=2.3e-17 Score=166.66 Aligned_cols=180 Identities=42% Similarity=0.635 Sum_probs=144.2
Q ss_pred HcCCCCCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
..++..++++|.+++..++.. +.++++++||+|||.+++.+++..+.... ..++||++|++.++.|+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHH
Confidence 356788999999999999998 99999999999999998988887775432 12699999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh
Q 003100 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 475 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
+..++... ........++.........+.....+|+++|++.+.+.+.... .....++++||||||.+....+...
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 74 LKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred HHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHH
Confidence 98887543 2233444455443434444444445999999999999887752 3456789999999999987568888
Q ss_pred HHHHHHhcCccceeEEEeccCChHHHHHHHHHhc
Q 003100 555 VENIVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~ 588 (848)
+..++..+++..+++++|||+++........++.
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 9999998888899999999999988888877775
No 128
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.76 E-value=5.2e-17 Score=179.28 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=125.4
Q ss_pred cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEE
Q 003100 565 RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFC 644 (848)
Q Consensus 565 ~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~ 644 (848)
..|+|++|||+.+.-..... ..--..+|...+. +...+.+.+.....+-|..-++.... .+.++||-+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~--~~vveQiIRPTGL--------lDP~ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTt 453 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG--GNVVEQIIRPTGL--------LDPEIEVRPTKGQVDDLLSEIRKRVA--KNERVLVTT 453 (663)
T ss_pred cCCEEEEECCCChHHHHhcc--CceeEEeecCCCC--------CCCceeeecCCCcHHHHHHHHHHHHh--cCCeEEEEe
Confidence 46999999998664222111 0000111211111 11122223334445555555555443 457999999
Q ss_pred ecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCC-----CCChh
Q 003100 645 STGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGI-----PPDRE 719 (848)
Q Consensus 645 ~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~-----P~s~~ 719 (848)
-|+++++.|.++|.+.|+++..+|++...-+|..++...+.|.++|||.-+.+-.|+|+|.|.+|..+|. ..|-.
T Consensus 454 LTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~ 533 (663)
T COG0556 454 LTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSER 533 (663)
T ss_pred ehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875 46889
Q ss_pred HHHHHhhccCCCCCCceEEEEeCc
Q 003100 720 QYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 720 ~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
+++|-+|||+| +..|.++++...
T Consensus 534 SLIQtIGRAAR-N~~GkvIlYAD~ 556 (663)
T COG0556 534 SLIQTIGRAAR-NVNGKVILYADK 556 (663)
T ss_pred hHHHHHHHHhh-ccCCeEEEEchh
Confidence 99999999999 557999988765
No 129
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=4.5e-17 Score=193.45 Aligned_cols=327 Identities=17% Similarity=0.237 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..++.+|.+.+.+++ .++++|+...+|-|||+. .+..|..++...... | -.|||+|...+ ..|.++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~~------g-pflvvvplst~-~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQIH------G-PFLVVVPLSTI-TAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhcc------C-CeEEEeehhhh-HHHHHHH
Confidence 679999999999887 478999999999999997 566666666543221 2 26889997655 4456666
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhh---hcC-----CCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRL---ESD-----PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~~~-----~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
.... .+++.++.|........+.. ... .++++++|++.++.--.. +.--.+.+++|||||+|-
T Consensus 440 ~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~-----L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 440 ETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE-----LSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh-----hccCCcceeeecHHhhcC
Confidence 6654 67788888886654333222 122 489999999988653221 112357899999999987
Q ss_pred cccchhhHHHHHHhcCccceeEEEeccC-ChHHHHHHHHH--h-----------------------------------cc
Q 003100 548 DLGFRKDVENIVDCLPRRRQSLLFSATM-PKEVRRISQLV--L-----------------------------------KR 589 (848)
Q Consensus 548 ~~gf~~~l~~Il~~l~~~~Q~ll~SATl-~~~v~~l~~~~--l-----------------------------------~~ 589 (848)
+. ...+...+..+.-..+ +++|.|+ -+.+..+..++ + +.
T Consensus 511 N~--~~~l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr 587 (1373)
T KOG0384|consen 511 ND--ESKLYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRR 587 (1373)
T ss_pred ch--HHHHHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHH
Confidence 64 2333444444443333 4555664 33444433221 0 00
Q ss_pred ------------ceEEEeecCCCc----------------------ccccc--e--------eecccccCChhhHH----
Q 003100 590 ------------EHTYIDTVGLGS----------------------VETPV--K--------IKQSCLVAPHELHF---- 621 (848)
Q Consensus 590 ------------~~~~i~~~~~~~----------------------~~~~~--~--------v~q~~~~~~~~~k~---- 621 (848)
.-.++. +.... ...+. + ..+-|++...+.+.
T Consensus 588 ~kkdvekslp~k~E~Ilr-Vels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~ 666 (1373)
T KOG0384|consen 588 LKKDVEKSLPPKEETILR-VELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF 666 (1373)
T ss_pred HHhhhccCCCCCcceEEE-eehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh
Confidence 000110 00000 00000 0 00111111111111
Q ss_pred ------HHH-------------HHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHH
Q 003100 622 ------QIL-------------HHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 682 (848)
Q Consensus 622 ------~~L-------------~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~ 682 (848)
..| ..+|... ...+++||||...+.+.+.|.++|...++++..|.|.+....|+.+++.
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDh 744 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDH 744 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHh
Confidence 111 1222221 2356899999999999999999999999999999999999999999999
Q ss_pred HhcC---CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCc--eEEEEeCc--chhhHHH
Q 003100 683 FRAS---KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EGVLLLAP--WEEYFLD 750 (848)
Q Consensus 683 F~~G---~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~i~l~~~--~e~~~l~ 750 (848)
|..- ...+|+||.+.+.|||+...+.||+||.-++|+.-+|...||.|.|+.. .+|.|++. .|+.+++
T Consensus 745 Fnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 745 FNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred ccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHH
Confidence 9853 4778999999999999999999999999999999999999999999765 46778876 3444443
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=2e-15 Score=179.56 Aligned_cols=318 Identities=17% Similarity=0.175 Sum_probs=207.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.| ..++++|.-.--.+ .+.-|+.+.||+|||+++.+|++-..+.+. .|.|++||-.||.|-++++.
T Consensus 79 lG-m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G~-----------~VhvvT~ndyLA~RD~e~m~ 144 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSGK-----------GVHVVTVNDYLARRDANWMR 144 (913)
T ss_pred hC-CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcCC-----------CEEEEeCCHHHHHHHHHHHH
Confidence 45 34667776554444 445688999999999999999986655432 58899999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++... |+.|.+++++.........+. ++|+++|..-| .++|..+-.+ ......+.++||||+|.++ |..
T Consensus 145 ~l~~~l-Gl~v~~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 145 PLYEFL-GLSVGIVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred HHhccc-CCEEEEECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 999875 899999988876554333332 89999998886 3444433111 1123678999999999865 210
Q ss_pred --------------chhhHHHHHHhcCc--------------------ccee----------------------------
Q 003100 551 --------------FRKDVENIVDCLPR--------------------RRQS---------------------------- 568 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~~--------------------~~Q~---------------------------- 568 (848)
....+..++..+.+ .+++
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 11112222222210 1111
Q ss_pred --------------------------------------------------------------------------------
Q 003100 569 -------------------------------------------------------------------------------- 568 (848)
Q Consensus 569 -------------------------------------------------------------------------------- 568 (848)
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence
Q ss_pred -------EEEeccCChHHHHHHHHHhccceEEEeecCCCccccccee----ecccccCChhhHHHHHHHHHHHHhhCCCC
Q 003100 569 -------LLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKI----KQSCLVAPHELHFQILHHLLKEHILGTPD 637 (848)
Q Consensus 569 -------ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v----~q~~~~~~~~~k~~~L~~lL~~~~~~~~~ 637 (848)
.+||.|...+...|...+- -+...| +++.++ ....++.....|+..+..-+...+. .+
T Consensus 381 Fr~Y~kLsGMTGTa~te~~Ef~~iY~-l~Vv~I--------PTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~--~G 449 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFEFRQIYG-LDVVVI--------PPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMA--LG 449 (913)
T ss_pred HHhcchhccCCCCCHHHHHHHHHHhC-CCEEEC--------CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh--CC
Confidence 1112221111111111110 000000 011110 1112334556677777666665543 56
Q ss_pred ceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC-ceEEEecCCccccccCC------------
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDYP------------ 704 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~VLVaTdvl~rGlDip------------ 704 (848)
.+|||-+.|.+..+.+...|...+++...+++... +++..+-. ..|. -.|.|||++++||.||.
T Consensus 450 rPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~ 526 (913)
T PRK13103 450 RPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAAL 526 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhh
Confidence 79999999999999999999999999888888744 33322222 3554 57999999999999994
Q ss_pred --------------------CC-----CeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 705 --------------------DV-----TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 705 --------------------~V-----~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
.| =+||--..+.|..---|-.|||||-|.+|.+-.|++-.|.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 527 ENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 2688888899999899999999999999999999987553
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=6.9e-15 Score=173.32 Aligned_cols=320 Identities=18% Similarity=0.204 Sum_probs=209.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|. .++++|.-+--.+..| -|..+.||-|||++..+|+.-..+.+. .|-|++..--||..=++++.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHH
Confidence 355 4788887776666666 489999999999999999865444332 47788888999999888888
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++.+. |+.|++...+.......... .|+|+++|..-| .++|..+... ..-...+.+.||||+|.++ |..
T Consensus 141 ~vy~fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 141 KVFNFL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HHHHHh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 888765 89999888776544333322 389999998776 3455433111 1224678899999999864 210
Q ss_pred --------------chhhHHHHHHhcCc--------cc------------------------------------------
Q 003100 551 --------------FRKDVENIVDCLPR--------RR------------------------------------------ 566 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~~--------~~------------------------------------------ 566 (848)
+...+..++..+.. .+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 11122222222221 01
Q ss_pred ------------------------------------------------------------------eeEEEeccCChHHH
Q 003100 567 ------------------------------------------------------------------QSLLFSATMPKEVR 580 (848)
Q Consensus 567 ------------------------------------------------------------------Q~ll~SATl~~~v~ 580 (848)
++.+||.|...+-.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 11222222222222
Q ss_pred HHHHHHhccceEEEeecCCCcccccc-eee-cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Q 003100 581 RISQLVLKREHTYIDTVGLGSVETPV-KIK-QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLR 658 (848)
Q Consensus 581 ~l~~~~l~~~~~~i~~~~~~~~~~~~-~v~-q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~ 658 (848)
.|...+. -....|.+ ..|. ... ...++.....|+..+..-+...+. .+.++||.|.|...++.+...|.
T Consensus 377 Ef~~iY~-l~Vv~IPT------nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~ 447 (925)
T PRK12903 377 EFIDIYN-MRVNVVPT------NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLL 447 (925)
T ss_pred HHHHHhC-CCEEECCC------CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHH
Confidence 2221111 01111100 0010 000 112334556677777666665442 46799999999999999999999
Q ss_pred HhccceeeecCCcchhhHHHHHHHHhcCC-ceEEEecCCccccccCCCCC--------eeEEcCCCCChhHHHHHhhccC
Q 003100 659 EMKMNVREMYSRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDYPDVT--------SVVQVGIPPDREQYIHRLGRTG 729 (848)
Q Consensus 659 ~~~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~VLVaTdvl~rGlDip~V~--------~VI~yd~P~s~~~yiQRiGRaG 729 (848)
+.++....+++.. .+++..+-. ..|. -.|.|||++++||.||.--. +||....|.|..---|..||||
T Consensus 448 ~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaG 524 (925)
T PRK12903 448 EANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSG 524 (925)
T ss_pred HCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccc
Confidence 9999999999873 344433333 4564 67999999999999996322 8999999999988899999999
Q ss_pred CCCCCceEEEEeCcchh
Q 003100 730 REGKEGEGVLLLAPWEE 746 (848)
Q Consensus 730 R~G~~G~~i~l~~~~e~ 746 (848)
|.|.+|.+-.|++-.|.
T Consensus 525 RQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 525 RQGDVGESRFFISLDDQ 541 (925)
T ss_pred cCCCCCcceEEEecchH
Confidence 99999999999886653
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=2.9e-16 Score=149.08 Aligned_cols=120 Identities=34% Similarity=0.616 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.+...+..++..... .+.++||||++...++.++..|...+..+..+||+++..+|..++..|.++...||++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 677778887776532 567999999999999999999998889999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEE
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLL 740 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l 740 (848)
+|+|+|++++||+++.|++...|+|++||++|.|+.|.++++
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998888764
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.2e-16 Score=174.36 Aligned_cols=325 Identities=20% Similarity=0.211 Sum_probs=207.0
Q ss_pred CCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCC
Q 003100 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449 (848)
Q Consensus 373 ~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g---~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~ 449 (848)
-|++....|..-.+.|.+-=-|+ .-..++|+|++++..+..+ +..||+.|+|+|||++-+- +...+.
T Consensus 276 yPlLeEYDFRND~~npdl~idLK--Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT-Aa~tik------- 345 (776)
T KOG1123|consen 276 YPLLEEYDFRNDNVNPDLDIDLK--PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT-AACTIK------- 345 (776)
T ss_pred chhhhhhccccCCCCCCCCcCcC--cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee-eeeeec-------
Confidence 34444555554444444322221 2346899999999988863 4789999999999997322 222221
Q ss_pred CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC--
Q 003100 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-- 527 (848)
Q Consensus 450 ~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~-- 527 (848)
-.|||||.+-.-+.||..++..+..-.+ -.++.++.+.. .....++.|+|+|+.++..--.+...
T Consensus 346 ------K~clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTsd~K------e~~~~~~gvvvsTYsMva~t~kRS~eae 412 (776)
T KOG1123|consen 346 ------KSCLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTSDAK------ERFPSGAGVVVTTYSMVAYTGKRSHEAE 412 (776)
T ss_pred ------ccEEEEecCccCHHHHHHHHHhhcccCc-cceEEeecccc------ccCCCCCcEEEEeeehhhhcccccHHHH
Confidence 1589999999999999999988765432 23444444332 22345689999999877421111000
Q ss_pred ---cccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh--------------ccc
Q 003100 528 ---LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL--------------KRE 590 (848)
Q Consensus 528 ---~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l--------------~~~ 590 (848)
..+.-..+.++|+||+|.+...-|+..+.-+-... .+.+|||+-.+...+....+ ...
T Consensus 413 k~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~k 487 (776)
T KOG1123|consen 413 KIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKK 487 (776)
T ss_pred HHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhC
Confidence 01223468999999999998777887666555544 38899998544333222211 100
Q ss_pred --eEEEeecCCCcccc---------cceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Q 003100 591 --HTYIDTVGLGSVET---------PVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 591 --~~~i~~~~~~~~~~---------~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
...+.+...=..-+ ...-+...+.+-...||....-+++.|- ..+.++|||..+.-....++-.|.
T Consensus 488 GhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE--~RgDKiIVFsDnvfALk~YAikl~- 564 (776)
T KOG1123|consen 488 GHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHE--RRGDKIIVFSDNVFALKEYAIKLG- 564 (776)
T ss_pred CceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHcC-
Confidence 00011100000000 0001112223334556776666665543 256799999988766555555443
Q ss_pred hccceeeecCCcchhhHHHHHHHHhc-CCceEEEecCCccccccCCCCCeeEEcCCC-CChhHHHHHhhccCCCC
Q 003100 660 MKMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTSVVQVGIP-PDREQYIHRLGRTGREG 732 (848)
Q Consensus 660 ~~~~v~~lhg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~V~~VI~yd~P-~s~~~yiQRiGRaGR~G 732 (848)
--.|+|..+|.+|.++++.|+. ..+.-++-+-|+...+|+|..+++|+...- .|..+=.||.||.-|+.
T Consensus 565 ----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 565 ----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 3578999999999999999995 568889999999999999999999987764 46788899999988865
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=1.7e-14 Score=179.48 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcc--ceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 621 ~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~--~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
...+...|...+. ..++++|||++|....+.++..|..... .+..+.-+++...|..+++.|+.+...||++|..+.
T Consensus 737 ~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFw 815 (928)
T PRK08074 737 IEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCccc
Confidence 3455555555443 2467999999999999999999975422 123333344445689999999999899999999999
Q ss_pred ccccCCCC--CeeEEcCCCC------------------------------ChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 699 RGMDYPDV--TSVVQVGIPP------------------------------DREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 699 rGlDip~V--~~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
.|||+|+- ++||...+|. ....+.|.+||.-|....--+++++.+
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 99999984 7888888763 122346999999997754334444444
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.66 E-value=2.3e-14 Score=168.66 Aligned_cols=335 Identities=17% Similarity=0.194 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHhC---C-------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 401 QMTRVQEATLSACLE---G-------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~---g-------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
.|+|+|++.+.-+.. | ..+|+.-.+|+|||+. +|+.+..+++..+.... .. -++|||+|. .|+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~--~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LI--NKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cc--cccEEEccH-HHHHH
Confidence 489999999876543 2 3578888999999998 77777777776544211 01 258999994 88899
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcch--hHhhh----hhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 471 IAAEAIALLKNHDGIGVLTLVGGTRF--KVDQR----RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~gg~~~--~~~~~----~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
|+++|.++...+ .+....+++..+- ..... .......-|++.+.+.+.+++.. +.+..+++||+||.|
T Consensus 313 WkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 313 WKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCC
Confidence 999999998642 5667777777662 00000 01112346888899998877654 345678999999999
Q ss_pred ccccccchhhHHHHHHhcCccceeEEEeccCC-hHHHHHHHHHhccceEEEee---------------------------
Q 003100 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMP-KEVRRISQLVLKREHTYIDT--------------------------- 596 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~-~~v~~l~~~~l~~~~~~i~~--------------------------- 596 (848)
++-+. ...+.+.+..+...+ -|++|.|+- +++.++...+.-..+.++..
T Consensus 387 rlkN~--~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 387 RLKNS--DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred Cccch--hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 98654 234444555554433 466688852 22222211110000000000
Q ss_pred ------------------cC-CCcccccceeecccccCC-----------------------------------------
Q 003100 597 ------------------VG-LGSVETPVKIKQSCLVAP----------------------------------------- 616 (848)
Q Consensus 597 ------------------~~-~~~~~~~~~v~q~~~~~~----------------------------------------- 616 (848)
.+ ......|.... +.+++.
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e-~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYE-YVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCcee-EEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 00 00000000000 000000
Q ss_pred ---------------------------------hhhHHHHHHHHHHHHhhCCCCceEEEE---EecchHH-HHHHHHHHH
Q 003100 617 ---------------------------------HELHFQILHHLLKEHILGTPDYKVIVF---CSTGMVT-SLLYLLLRE 659 (848)
Q Consensus 617 ---------------------------------~~~k~~~L~~lL~~~~~~~~~~kiLVF---~~s~~~a-~~l~~~L~~ 659 (848)
...++..|..++... ..++++| +.....+ +.+...++-
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-----~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-----REKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-----hhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 011222333333111 1233333 3333333 444444455
Q ss_pred hccceeeecCCcchhhHHHHHHHHhcCC---ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCce
Q 003100 660 MKMNVREMYSRKPQLYRDRISEEFRASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE 736 (848)
Q Consensus 660 ~~~~v~~lhg~ls~~~R~~i~~~F~~G~---~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~ 736 (848)
.|+.++.+||.++..+|+.+++.|.+.. .-+|.+|-+++.||++-+.+.||.||+.++|+.-.|.++|+-|.|+.-.
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 6999999999999999999999998643 3457778899999999999999999999999999999999999998766
Q ss_pred EEE--EeCc---chhhHHHHhccC
Q 003100 737 GVL--LLAP---WEEYFLDDLKDL 755 (848)
Q Consensus 737 ~i~--l~~~---~e~~~l~~L~~~ 755 (848)
|++ |++. .|..|-+...+.
T Consensus 698 v~iYrLlatGtiEEk~~qrq~~K~ 721 (776)
T KOG0390|consen 698 VYIYRLLATGTIEEKIYQRQTHKE 721 (776)
T ss_pred EEEEEeecCCCchHHHHHHHHHhh
Confidence 654 4443 444555555443
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.63 E-value=3.4e-14 Score=168.55 Aligned_cols=281 Identities=18% Similarity=0.152 Sum_probs=174.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.. ++++|.-+.-.+ .+.-|+.+.||.|||+++.+|++-..+.+ ..|.|++++..||.+-++++.
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHH
Confidence 4654 777776655444 45679999999999999999986443322 258899999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHH-HHHHhccC---cccccCCccEEEEecccccc-cc--
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSG---LSVRLMGLKMLVLDEADHLL-DL-- 549 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl-~~L~~~~~---~~~~l~~l~~lVIDEAH~ll-~~-- 549 (848)
.++.+. |+.|+++.++.+........ .|+|+++|..-|- ++|...-. .......+.+.||||||.++ |.
T Consensus 139 pvy~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeAr 214 (870)
T CHL00122 139 QIYRFL-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEAR 214 (870)
T ss_pred HHHHHc-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCC
Confidence 998876 89999998887765433333 3799999986442 33332210 01224678899999999853 11
Q ss_pred ------c-------chhh--------------------------------HHH-----------------HHHhcC----
Q 003100 550 ------G-------FRKD--------------------------------VEN-----------------IVDCLP---- 563 (848)
Q Consensus 550 ------g-------f~~~--------------------------------l~~-----------------Il~~l~---- 563 (848)
| .... +.. |...+.
T Consensus 215 TPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~l 294 (870)
T CHL00122 215 TPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKEL 294 (870)
T ss_pred CceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHH
Confidence 0 0000 001 111000
Q ss_pred --cc-------------------------------------------------------------ceeEEEeccCChHHH
Q 003100 564 --RR-------------------------------------------------------------RQSLLFSATMPKEVR 580 (848)
Q Consensus 564 --~~-------------------------------------------------------------~Q~ll~SATl~~~v~ 580 (848)
++ ..+.+||.|...+-.
T Consensus 295 f~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~ 374 (870)
T CHL00122 295 FFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEEL 374 (870)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHH
Confidence 00 134556666654444
Q ss_pred HHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh
Q 003100 581 RISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM 660 (848)
Q Consensus 581 ~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~ 660 (848)
.+...+- -+...|.+. ..... .-....+......|...+..-+...+ ..+.+|||-|.|....+.+...|.+.
T Consensus 375 Ef~~iY~-l~vv~IPtn---kp~~R-~d~~d~v~~t~~~K~~AI~~ei~~~~--~~grPVLIgT~SIe~SE~ls~~L~~~ 447 (870)
T CHL00122 375 EFEKIYN-LEVVCIPTH---RPMLR-KDLPDLIYKDELSKWRAIADECLQMH--QTGRPILIGTTTIEKSELLSQLLKEY 447 (870)
T ss_pred HHHHHhC-CCEEECCCC---CCccc-eeCCCeEEeCHHHHHHHHHHHHHHHH--hcCCCEEEeeCCHHHHHHHHHHHHHc
Confidence 4433332 122222111 00000 01112334455556665555554433 35679999999999999999999999
Q ss_pred ccceeeecCCcchhhHHHHHHHHhcCC-ceEEEecCCccccccC
Q 003100 661 KMNVREMYSRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDY 703 (848)
Q Consensus 661 ~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~VLVaTdvl~rGlDi 703 (848)
+++..++++.-....++..+-.- .|. -.|.|||++++||.||
T Consensus 448 gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 448 RLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred CCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCe
Confidence 99999999874332333322222 454 5799999999999998
No 137
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=1e-14 Score=161.70 Aligned_cols=291 Identities=18% Similarity=0.144 Sum_probs=192.4
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
.+-++-++||.||||.- +|+++.... .+++.-|.|-||.++++++.+. ++.+.+++|...
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEER 250 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc-----------cceecchHHHHHHHHHHHhhhc-----CCCcccccccee
Confidence 34467889999999985 778877654 3689999999999999998876 788888888765
Q ss_pred hhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH-HHhcCccceeEEEecc
Q 003100 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI-VDCLPRRRQSLLFSAT 574 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I-l~~l~~~~Q~ll~SAT 574 (848)
....-. .+.++.+-||-++.- . -..+++.||||+++|-|...+-.|.+- +........+++=
T Consensus 251 ~~~~~~---~~~a~hvScTVEM~s----------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe--- 313 (700)
T KOG0953|consen 251 RFVLDN---GNPAQHVSCTVEMVS----------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE--- 313 (700)
T ss_pred eecCCC---CCcccceEEEEEEee----------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC---
Confidence 432211 234677888877641 1 246899999999999887655555543 3333333333331
Q ss_pred CChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHH
Q 003100 575 MPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLY 654 (848)
Q Consensus 575 l~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~ 654 (848)
+.+-.+.+.++...-.-+.+. ....+... .....++ ..+.+-.++-|| .|-|++..-.+.
T Consensus 314 --psvldlV~~i~k~TGd~vev~------~YeRl~pL----------~v~~~~~-~sl~nlk~GDCv-V~FSkk~I~~~k 373 (700)
T KOG0953|consen 314 --PSVLDLVRKILKMTGDDVEVR------EYERLSPL----------VVEETAL-GSLSNLKPGDCV-VAFSKKDIFTVK 373 (700)
T ss_pred --chHHHHHHHHHhhcCCeeEEE------eecccCcc----------eehhhhh-hhhccCCCCCeE-EEeehhhHHHHH
Confidence 233334444433211111100 00000000 0001111 112222344554 455677888888
Q ss_pred HHHHHhccc-eeeecCCcchhhHHHHHHHHhc--CCceEEEecCCccccccCCCCCeeEEcCCC---------CChhHHH
Q 003100 655 LLLREMKMN-VREMYSRKPQLYRDRISEEFRA--SKRLILVTSDVSARGMDYPDVTSVVQVGIP---------PDREQYI 722 (848)
Q Consensus 655 ~~L~~~~~~-v~~lhg~ls~~~R~~i~~~F~~--G~~~VLVaTdvl~rGlDip~V~~VI~yd~P---------~s~~~yi 722 (848)
..+.+.+.. +++++|++++..|......|.+ ++.+||||||+.++|+|+ +++.||.|++- .+..+..
T Consensus 374 ~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqik 452 (700)
T KOG0953|consen 374 KKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIK 452 (700)
T ss_pred HHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHH
Confidence 888887766 9999999999999999999987 889999999999999999 89999988863 4778999
Q ss_pred HHhhccCCCCC---CceEEEEeCcchhhHHHHhccCCCCcCCCCCC
Q 003100 723 HRLGRTGREGK---EGEGVLLLAPWEEYFLDDLKDLPLDKLQLPHL 765 (848)
Q Consensus 723 QRiGRaGR~G~---~G~~i~l~~~~e~~~l~~L~~~~l~~~~~~~~ 765 (848)
|.+|||||.|. .|.+.++. ..|...++.+-+.+.+++.-..+
T Consensus 453 QIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~~p~epi~~agl 497 (700)
T KOG0953|consen 453 QIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILKRPVEPIKNAGL 497 (700)
T ss_pred HHhhcccccccCCcCceEEEee-HhhHHHHHHHHhCCchHHHhccC
Confidence 99999999874 46666654 34556666665555555443333
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.63 E-value=1.9e-14 Score=170.59 Aligned_cols=328 Identities=19% Similarity=0.251 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHh--C--CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACL--E--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il--~--g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.++.||++.+.++. + +-+.|+|..+|-|||+.-+--+....++.+ .........-.|||||. .|+--|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 36889999988753 2 458899999999999984433333333331 11222333448999995 88888998888
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
+++. .++|..++|+...+...+.-. +..+|+|++++.+..-+..- .-..+.|+|+||.|-+-+. ...+.
T Consensus 1052 kf~p---fL~v~~yvg~p~~r~~lR~q~-~~~~iiVtSYDv~RnD~d~l-----~~~~wNYcVLDEGHVikN~--ktkl~ 1120 (1549)
T KOG0392|consen 1052 KFFP---FLKVLQYVGPPAERRELRDQY-KNANIIVTSYDVVRNDVDYL-----IKIDWNYCVLDEGHVIKNS--KTKLT 1120 (1549)
T ss_pred Hhcc---hhhhhhhcCChHHHHHHHhhc-cccceEEeeHHHHHHHHHHH-----HhcccceEEecCcceecch--HHHHH
Confidence 8864 467777887755443333222 23799999999886433211 1235789999999998664 44455
Q ss_pred HHHHhcCccceeEEEeccC-ChHHHHHHHHH-------------------------------------------------
Q 003100 557 NIVDCLPRRRQSLLFSATM-PKEVRRISQLV------------------------------------------------- 586 (848)
Q Consensus 557 ~Il~~l~~~~Q~ll~SATl-~~~v~~l~~~~------------------------------------------------- 586 (848)
+-++.+..+.+ +++|.|+ -+++..+...+
T Consensus 1121 kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1121 KAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 55555554444 4456664 12221111110
Q ss_pred ------------hc-cceEEEee-----------------------------cCCCccccc-ce----e------eccc-
Q 003100 587 ------------LK-REHTYIDT-----------------------------VGLGSVETP-VK----I------KQSC- 612 (848)
Q Consensus 587 ------------l~-~~~~~i~~-----------------------------~~~~~~~~~-~~----v------~q~~- 612 (848)
+. -|+.+|.. .+..+..+. .. + ..+.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 00 01111100 000000000 00 0 0000
Q ss_pred -cc-----------------------CChhhHHHHHHHHHHHHhhC------------CCCceEEEEEecchHHHHHHHH
Q 003100 613 -LV-----------------------APHELHFQILHHLLKEHILG------------TPDYKVIVFCSTGMVTSLLYLL 656 (848)
Q Consensus 613 -~~-----------------------~~~~~k~~~L~~lL~~~~~~------------~~~~kiLVF~~s~~~a~~l~~~ 656 (848)
+. .....|+..|..+|.+--.. -..+++||||.-+.+.+.+.+.
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 00 01122344455555432111 1346999999999999999888
Q ss_pred HHHh---ccceeeecCCcchhhHHHHHHHHhcC-CceEE-EecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCC
Q 003100 657 LREM---KMNVREMYSRKPQLYRDRISEEFRAS-KRLIL-VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 731 (848)
Q Consensus 657 L~~~---~~~v~~lhg~ls~~~R~~i~~~F~~G-~~~VL-VaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 731 (848)
|-+. .+.+..+.|..++.+|.++..+|.++ .++|| ++|-|.+.|+|+.+.+.||.++--|++..-+|.+-||.|.
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 7664 34567999999999999999999998 67775 6889999999999999999999999999999999999999
Q ss_pred CCCce--EEEEeCc
Q 003100 732 GKEGE--GVLLLAP 743 (848)
Q Consensus 732 G~~G~--~i~l~~~ 743 (848)
|++-. ++.|++.
T Consensus 1440 GQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITR 1453 (1549)
T ss_pred cCceeeeeeeehhc
Confidence 97643 4555554
No 139
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.62 E-value=1.2e-15 Score=132.45 Aligned_cols=78 Identities=29% Similarity=0.519 Sum_probs=75.3
Q ss_pred HHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC
Q 003100 655 LLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG 732 (848)
Q Consensus 655 ~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G 732 (848)
+.|+..++.+..+||++++.+|..+++.|.++...|||||+++++|+|+|++++||++++|+++..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.62 E-value=2.8e-13 Score=159.39 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc----CCceEEEecCCccc
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA----SKRLILVTSDVSAR 699 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~----G~~~VLVaTdvl~r 699 (848)
+...+...+. ...++++|.+.|......++..|...--....+.|..+ .+..+++.|+. |...||++|+.+..
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 4444444433 25679999999999999999999653212344445432 35778899987 47899999999999
Q ss_pred cccC--------CC--CCeeEEcCCCCC-------------------------hhHHHHHhhccCCCCCC
Q 003100 700 GMDY--------PD--VTSVVQVGIPPD-------------------------REQYIHRLGRTGREGKE 734 (848)
Q Consensus 700 GlDi--------p~--V~~VI~yd~P~s-------------------------~~~yiQRiGRaGR~G~~ 734 (848)
|||+ |+ +++||+.-+|.. .-.+.|-+||.-|....
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 9999 33 888998777721 22346888888886643
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2.1e-13 Score=161.62 Aligned_cols=128 Identities=22% Similarity=0.207 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
++++|.-.--.+ .+.-|+.+.||-|||+++.+|++-..+.+. .|.||+++..||..-++++..++.+
T Consensus 86 ~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gk-----------gVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 86 HFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGK-----------GVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred cchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCC-----------CeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 667775554444 445689999999999999999876554332 5889999999999999999999887
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-----HHHHHhccCcccccCCccEEEEecccccc
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-----l~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
. |+.|+++.++......... ..|||+++|+..| .+.|..... ......+.+.||||||.++
T Consensus 153 L-GLtvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 153 L-GLSVGLIQQDMSPEERKKN---YACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred h-CCeEEEECCCCChHHHHHh---cCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 6 9999998877655433322 3489999999887 555543221 1235678999999999865
No 142
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.60 E-value=5e-14 Score=161.58 Aligned_cols=327 Identities=15% Similarity=0.189 Sum_probs=210.5
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.|+. |-+||.-.+.++. .+-+.|+...+|-|||.. ++..+..|...+..++ -|||||...| .
T Consensus 396 s~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gp--------HLVVvPsSTl----e 461 (941)
T KOG0389|consen 396 SGIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGP--------HLVVVPSSTL----E 461 (941)
T ss_pred CCCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCC--------cEEEecchhH----H
Confidence 3444 8899999988765 355779999999999997 6666766766544322 4899998766 3
Q ss_pred HHHHHHhhcCCCceEEEEeCCcchhHhhhhhh-c--CCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 473 AEAIALLKNHDGIGVLTLVGGTRFKVDQRRLE-S--DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~--~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
+++.++.+++|.+.|..++|...-..+.+... . .+++|+++|+.....--.. . ..+.-.++.++|+||+|.|-+.
T Consensus 462 NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD-R-sflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 462 NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD-R-SFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH-H-HHHHhccccEEEecchhhhhcc
Confidence 34555555678899999999876554444332 2 2689999998765311110 0 1123347899999999998765
Q ss_pred cchhhHHHHHHhcCccceeEEEeccCC-hHHHHHHHHH------------------------------------------
Q 003100 550 GFRKDVENIVDCLPRRRQSLLFSATMP-KEVRRISQLV------------------------------------------ 586 (848)
Q Consensus 550 gf~~~l~~Il~~l~~~~Q~ll~SATl~-~~v~~l~~~~------------------------------------------ 586 (848)
. ...+..++. ++ ..+.|++|.|+- +++.++...+
T Consensus 540 ~-SeRy~~LM~-I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 540 T-SERYKHLMS-IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRA 616 (941)
T ss_pred c-hHHHHHhcc-cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHH
Confidence 4 222222222 11 223355555531 1111111100
Q ss_pred ----------------hccce---EEEeecCCC-------------------cccc-------------------cceee
Q 003100 587 ----------------LKREH---TYIDTVGLG-------------------SVET-------------------PVKIK 609 (848)
Q Consensus 587 ----------------l~~~~---~~i~~~~~~-------------------~~~~-------------------~~~v~ 609 (848)
++.-+ ..|...... .... |.-++
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 00000 000000000 0000 00000
Q ss_pred cccc------------------c-------------------------------------CChhhHHHHHHHHHHHHhhC
Q 003100 610 QSCL------------------V-------------------------------------APHELHFQILHHLLKEHILG 634 (848)
Q Consensus 610 q~~~------------------~-------------------------------------~~~~~k~~~L~~lL~~~~~~ 634 (848)
++|. . .-...|+..|..+|....
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k-- 774 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIK-- 774 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHh--
Confidence 0000 0 001223444555555442
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC--ceEEEecCCccccccCCCCCeeEEc
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK--RLILVTSDVSARGMDYPDVTSVVQV 712 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~--~~VLVaTdvl~rGlDip~V~~VI~y 712 (848)
..+.+||||..-..+.+.|...|..+++.+..+.|...-..|+.+++.|...+ .-+|++|-+.+-|||+...++||.+
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIih 854 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIH 854 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEe
Confidence 24579999999999999999999999999999999999999999999998654 4568999999999999999999999
Q ss_pred CCCCChhHHHHHhhccCCCCCC--ceEEEEeCcc
Q 003100 713 GIPPDREQYIHRLGRTGREGKE--GEGVLLLAPW 744 (848)
Q Consensus 713 d~P~s~~~yiQRiGRaGR~G~~--G~~i~l~~~~ 744 (848)
|+..++-.-.|.--||.|.|+. -.++.|++..
T Consensus 855 D~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 855 DIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999999964 4566677653
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.59 E-value=5.3e-14 Score=153.91 Aligned_cols=311 Identities=16% Similarity=0.219 Sum_probs=205.3
Q ss_pred CCcHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 401 QMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 401 ~~t~iQ~~aI~~il-~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
.+-|+|.+.+...+ .|..+++...+|-|||+.++ ++...++..+ -.||+||. .+-..|++.+.+++
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl--aIA~yyraEw----------plliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL--AIARYYRAEW----------PLLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH--HHHHHHhhcC----------cEEEEecH-HHhHHHHHHHHHhc
Confidence 35799999987655 58899999999999999743 4445555543 27899996 45577888888887
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHH
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
..... +.++.++.+...... ....|.|.+++.|..+-.. +.-..+.+||+||.|++-+.. ......++
T Consensus 265 ps~~p--i~vv~~~~D~~~~~~----t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~ 332 (689)
T KOG1000|consen 265 PSIHP--IFVVDKSSDPLPDVC----TSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAAT 332 (689)
T ss_pred ccccc--eEEEecccCCccccc----cCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhhh
Confidence 65433 445555544332211 1247899999987554322 222358999999999987653 34455666
Q ss_pred HhcCccceeEEEeccCC----h---------------HHHHHHHHHhccce--EEEeecCCCc-----------------
Q 003100 560 DCLPRRRQSLLFSATMP----K---------------EVRRISQLVLKREH--TYIDTVGLGS----------------- 601 (848)
Q Consensus 560 ~~l~~~~Q~ll~SATl~----~---------------~v~~l~~~~l~~~~--~~i~~~~~~~----------------- 601 (848)
..+..-..+|++|.|+. . ....++..+|.... ...+..+..+
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRl 412 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRL 412 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 66666677899999962 1 12223333321100 0011000000
Q ss_pred -----ccccceeecccccC-------------------------------------ChhhHHHHHHHHHHHH--hhCCCC
Q 003100 602 -----VETPVKIKQSCLVA-------------------------------------PHELHFQILHHLLKEH--ILGTPD 637 (848)
Q Consensus 602 -----~~~~~~v~q~~~~~-------------------------------------~~~~k~~~L~~lL~~~--~~~~~~ 637 (848)
.+.|..-++..+.+ ....|...+.+.|..+ +...+.
T Consensus 413 K~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~ 492 (689)
T KOG1000|consen 413 KADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPP 492 (689)
T ss_pred HHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCC
Confidence 00000100000000 0111222233333321 123456
Q ss_pred ceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC-CceE-EEecCCccccccCCCCCeeEEcCCC
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS-KRLI-LVTSDVSARGMDYPDVTSVVQVGIP 715 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G-~~~V-LVaTdvl~rGlDip~V~~VI~yd~P 715 (848)
.|.+|||......+.+...+++.++....|.|..+...|....+.|... ++.| +++-.+++.|+++...+.||...++
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec
Confidence 7999999999999999999999999999999999999999999999965 4555 5667888999999999999999999
Q ss_pred CChhHHHHHhhccCCCCCCce
Q 003100 716 PDREQYIHRLGRTGREGKEGE 736 (848)
Q Consensus 716 ~s~~~yiQRiGRaGR~G~~G~ 736 (848)
+++.-++|.--|+.|.|+..-
T Consensus 573 wnPgvLlQAEDRaHRiGQkss 593 (689)
T KOG1000|consen 573 WNPGVLLQAEDRAHRIGQKSS 593 (689)
T ss_pred CCCceEEechhhhhhccccce
Confidence 999999999999999997643
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=7.6e-14 Score=132.55 Aligned_cols=144 Identities=44% Similarity=0.613 Sum_probs=105.3
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 496 (848)
+++++.++||+|||.+++..+........ ..+++|++|++.++.|+.+.+...... .+.+..+.+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcch
Confidence 46899999999999997777665554311 136999999999999999988887653 5667777766554
Q ss_pred hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 497 ~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
.... .......+|+++|++.+...+.... .....+++|||||+|.+....+...............+++++|||+
T Consensus 70 ~~~~-~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 70 KQQE-KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHH-HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4332 2233458999999999988776552 2345789999999999887654443333444556778899999995
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.54 E-value=3.4e-14 Score=163.17 Aligned_cols=321 Identities=18% Similarity=0.209 Sum_probs=189.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCC----CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH
Q 003100 391 IKALTAAGYIQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~g----~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre 466 (848)
...|.-..-.+|+|+|+.||.+.++| ...=+.+.+|+|||+. .|-+.+.+... ++|+|+|+..
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~~------------~iL~LvPSIs 217 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAAA------------RILFLVPSIS 217 (1518)
T ss_pred ccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhhh------------heEeecchHH
Confidence 33444345567999999999998875 2344677889999998 45565555442 6999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhh------------------------hhhcCCCcEEEeChHHHHHHH
Q 003100 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR------------------------RLESDPCQILVATPGRLLDHI 522 (848)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~------------------------~l~~~~~~IIV~TPgrLl~~L 522 (848)
|..|..+++..--. ..++...++.+........ .-+..+--||++|++.|...-
T Consensus 218 LLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~ 295 (1518)
T COG4889 218 LLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK 295 (1518)
T ss_pred HHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH
Confidence 99998887765422 2455555555433321111 112235678999999887665
Q ss_pred HhccCcccccCCccEEEEecccccccccchhhHHHHHHhcC-----ccceeEEEeccCCh---HHHH-------------
Q 003100 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-----RRRQSLLFSATMPK---EVRR------------- 581 (848)
Q Consensus 523 ~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~-----~~~Q~ll~SATl~~---~v~~------------- 581 (848)
... ..-+..+++||.||||+-........=..-+..+. +..+.+.||||+.- ....
T Consensus 296 eAQ---e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 296 EAQ---EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHH---HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 443 23367899999999999543211110000001111 12234678888521 1110
Q ss_pred -----------------HHHHHhccceEEEeecCCCcccccceeecccccCCh-hhHHHHHHHHH------HHHhh----
Q 003100 582 -----------------ISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH-ELHFQILHHLL------KEHIL---- 633 (848)
Q Consensus 582 -----------------l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~-~~k~~~L~~lL------~~~~~---- 633 (848)
+.+-++.....++-.+..... ....+.....+. ....+..-.++ ...-.
T Consensus 373 De~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i---~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~ 449 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVI---AGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDND 449 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhh---hhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccc
Confidence 011111111111111111100 000111111111 12222222222 11110
Q ss_pred -------CCCCceEEEEEecchHHHHHHHHHHH---------------hccceeeecCCcchhhHHHHHH---HHhcCCc
Q 003100 634 -------GTPDYKVIVFCSTGMVTSLLYLLLRE---------------MKMNVREMYSRKPQLYRDRISE---EFRASKR 688 (848)
Q Consensus 634 -------~~~~~kiLVF~~s~~~a~~l~~~L~~---------------~~~~v~~lhg~ls~~~R~~i~~---~F~~G~~ 688 (848)
..+..+.|-||.+.++...+...|.. +.+.+..+.|.|...+|...+. .|....+
T Consensus 450 ~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 450 LKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred ccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 01223678999998887777666543 2456677779999999965544 3345678
Q ss_pred eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC
Q 003100 689 LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG 732 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G 732 (848)
+||--...++.|+|+|.++-||.+++-.+..+.+|.+||..|..
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 89988899999999999999999999999999999999999953
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.54 E-value=6.3e-12 Score=152.00 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-ccceeeecCCcchhhHHHHHHHHhc----CCceEEEec
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRA----SKRLILVTS 694 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~ls~~~R~~i~~~F~~----G~~~VLVaT 694 (848)
....+...|...+. ..+++|||++|....+.++..|... +.. ...+|. ..+..+++.|++ ++..||++|
T Consensus 519 ~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~ 592 (697)
T PRK11747 519 HTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEe
Confidence 44556666666554 3456999999999999999998743 333 333453 246778877764 678899999
Q ss_pred CCccccccCCC--CCeeEEcCCCC----Ch--------------------------hHHHHHhhccCCCCCCceEEEEeC
Q 003100 695 DVSARGMDYPD--VTSVVQVGIPP----DR--------------------------EQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 695 dvl~rGlDip~--V~~VI~yd~P~----s~--------------------------~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
..+..|||+|+ +++||...+|. ++ ..+.|.+||.-|....--+++++.
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 99999999998 78899888773 11 123588999999764433344444
Q ss_pred c
Q 003100 743 P 743 (848)
Q Consensus 743 ~ 743 (848)
+
T Consensus 673 ~ 673 (697)
T PRK11747 673 R 673 (697)
T ss_pred c
Confidence 4
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=1.2e-12 Score=158.50 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcchhhHHHHHHHHhcCCc-eEEEecCC
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQLYRDRISEEFRASKR-LILVTSDV 696 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~~~R~~i~~~F~~G~~-~VLVaTdv 696 (848)
.-...+...+...+... ++++||||+|......+++.+...... ....+|.. .+..+++.|+.+.- .++|+|..
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gs 537 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGS 537 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeecc
Confidence 34455555555555444 449999999999999999999876543 33444443 35588888887665 99999999
Q ss_pred ccccccCCCC--CeeEEcCCCC------------------------------ChhHHHHHhhccCCCCCC
Q 003100 697 SARGMDYPDV--TSVVQVGIPP------------------------------DREQYIHRLGRTGREGKE 734 (848)
Q Consensus 697 l~rGlDip~V--~~VI~yd~P~------------------------------s~~~yiQRiGRaGR~G~~ 734 (848)
++.|||+|+= ++||..++|. ......|.+||.-|.-..
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 9999999984 7788888873 234457999999995543
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.52 E-value=7.4e-13 Score=157.62 Aligned_cols=314 Identities=14% Similarity=0.175 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 401 QMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
...++|.++++.+.+ +.+|+|.||+|||||.|.-+.++. . .+-.+++++.|.-+.+..+++.+.+-+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~-------~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P-------DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C-------ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 347889999988776 567999999999999997776653 1 123489999999999999998888777
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-----chhh
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-----FRKD 554 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-----f~~~ 554 (848)
....|..+..++|........ + .. .+|+|+||+++-. ++ ....+++.|.||.|.+.+.. -...
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lkl--~-~~-~~vii~tpe~~d~-lq-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLKL--L-QK-GQVIISTPEQWDL-LQ-------SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred ccccCceEEecCCccccchHH--h-hh-cceEEechhHHHH-Hh-------hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 777788888888887764322 2 22 5999999999643 33 24568999999999987432 1112
Q ss_pred HHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecc---cccCChhhHH----HHHHHH
Q 003100 555 VENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQS---CLVAPHELHF----QILHHL 627 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~---~~~~~~~~k~----~~L~~l 627 (848)
+..|...+-++.+++.+|..+.+.-. + ..+ ....+++. .....+.++..+ +-........ ...+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana~d-~--ig~-s~~~v~Nf---~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~a 1351 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANARD-L--IGA-SSSGVFNF---SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTA 1351 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccchh-h--ccc-cccceeec---CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHH
Confidence 66677777788899999988876432 2 111 11112211 111122222211 1111112111 222333
Q ss_pred HHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----------------------ccceeeecCCcchhhHHHHHHHHhc
Q 003100 628 LKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----------------------KMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 628 L~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----------------------~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
+..+. ...++.+||+++++.|..++..|-.. .+...+=|.+++..+...+...|..
T Consensus 1352 i~~~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~ 1429 (1674)
T KOG0951|consen 1352 IVRHA--GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEA 1429 (1674)
T ss_pred HHHHh--cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhc
Confidence 44443 25679999999999998776544221 1223333999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEE-----cC------CCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQ-----VG------IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~-----yd------~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
|.+.|+|...- ..|+-... +.||. || .+...+...|++|+|.| .|.|++++......|++..
T Consensus 1430 g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred CcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 99999998766 67776643 34442 22 24568899999999998 6799999988777666543
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.50 E-value=1.3e-13 Score=138.64 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHhC-------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE-------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~-------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~ 473 (848)
.|+++|.+++..+.. ++.+++.+|||||||.+++..+. .+.. ++||++|+..|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~-~l~~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL-ELAR-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH-HHHC-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh-cccc-------------ceeEecCHHHHHHHHHH
Confidence 479999999988884 68999999999999998664333 3332 58999999999999999
Q ss_pred HHHHHhhcCCCceEEE---------EeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc--------CcccccCCcc
Q 003100 474 EAIALLKNHDGIGVLT---------LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--------GLSVRLMGLK 536 (848)
Q Consensus 474 ~l~~l~~~~~~i~v~~---------l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~--------~~~~~l~~l~ 536 (848)
.+..+........... ...................+|+++|...|........ ........+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 9976654321110000 0011111112222334457999999999988765421 1123345678
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
+||+||||++.... .+..++. .+...+|+||||+.
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999999976542 1444555 45677899999975
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.48 E-value=5.4e-13 Score=156.54 Aligned_cols=321 Identities=15% Similarity=0.206 Sum_probs=207.2
Q ss_pred CCCcHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
-.+.+||...+.++.+ +-+-|+...||-|||.+ .+..+.++++..... || -|||||+-.|.+ |..+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~------GP-~LvivPlstL~N-W~~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQ------GP-FLIIVPLSTLVN-WSSEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccC------CC-eEEeccccccCC-chhhc
Confidence 3689999999988764 34779999999999998 777888888775432 22 589999988854 34444
Q ss_pred HHHhhcCCCceEEEEeCCcchhH-hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKV-DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~-~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
.. ..|.+....+.|...... ....+..+.++|+++|++.+.. ++. .+.--++.++||||.|+|.+. ...
T Consensus 464 ~k---WaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~-lLsKI~W~yMIIDEGHRmKNa--~~K 533 (1157)
T KOG0386|consen 464 PK---WAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKA-LLSKISWKYMIIDEGHRMKNA--ICK 533 (1157)
T ss_pred cc---cccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHH-HHhccCCcceeecccccccch--hhH
Confidence 44 456666666666543321 2233344679999999988764 211 122246789999999998653 122
Q ss_pred HHHHHHhcCccceeEEEeccC-----------------------------------------------------------
Q 003100 555 VENIVDCLPRRRQSLLFSATM----------------------------------------------------------- 575 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl----------------------------------------------------------- 575 (848)
+...++..-.....+++|.|.
T Consensus 534 Lt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVL 613 (1157)
T KOG0386|consen 534 LTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVL 613 (1157)
T ss_pred HHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhh
Confidence 222222111111112222221
Q ss_pred ----------------ChHHHHHHHHH------------hccceEEEeec-CCCcc-----------------cccceee
Q 003100 576 ----------------PKEVRRISQLV------------LKREHTYIDTV-GLGSV-----------------ETPVKIK 609 (848)
Q Consensus 576 ----------------~~~v~~l~~~~------------l~~~~~~i~~~-~~~~~-----------------~~~~~v~ 609 (848)
|..++.+.+.- ...+...++.. +.... ....++.
T Consensus 614 RPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve 693 (1157)
T KOG0386|consen 614 RPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE 693 (1157)
T ss_pred hHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc
Confidence 11111100000 00000011100 00000 0000000
Q ss_pred ccc-------ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHH
Q 003100 610 QSC-------LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 682 (848)
Q Consensus 610 q~~-------~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~ 682 (848)
..+ ..+-...|+.+|..+|-+.- ..++++|.||........+..+|.-.++.+..+.|.....+|...+..
T Consensus 694 ~~~~~~~~~~dL~R~sGKfELLDRiLPKLk--atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 694 NSYTLHYDIKDLVRVSGKFELLDRILPKLK--ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred cccccccChhHHHHhccHHHHHHhhhHHHH--hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 000 11123456777777776643 468899999999999999999999999999999999999999999999
Q ss_pred HhcCC---ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEe
Q 003100 683 FRASK---RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLL 741 (848)
Q Consensus 683 F~~G~---~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~ 741 (848)
|.... ..+|++|.+.+.|+|+...+.||.||.-+++..+.|+--||.|.|..-.+-++.
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 98654 467899999999999999999999999999999999999999999766554443
No 151
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.46 E-value=8.9e-12 Score=146.79 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=95.3
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC--ceEEEecCCccccccCCCCCeeEEcC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK--RLILVTSDVSARGMDYPDVTSVVQVG 713 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~--~~VLVaTdvl~rGlDip~V~~VI~yd 713 (848)
.++++|||....++.+.|...|+..|+.++.|.|..+-++|+..+++|.... ..+|++|...+.|||+.+.+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 5679999999999999999999999999999999999999999999998765 46788999999999999999999999
Q ss_pred CCCChhHHHHHhhccCCCCC--CceEEEEeCcc
Q 003100 714 IPPDREQYIHRLGRTGREGK--EGEGVLLLAPW 744 (848)
Q Consensus 714 ~P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~~ 744 (848)
.-+++..-.|.--|+.|.|+ .=+.|.|++..
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99998777666666666664 45677888763
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=2.4e-11 Score=147.89 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcc------ceeeecCCcchhhHHHHHHHHhc----CCce
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM------NVREMYSRKPQLYRDRISEEFRA----SKRL 689 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~------~v~~lhg~ls~~~R~~i~~~F~~----G~~~ 689 (848)
....+...|...+.. .++.+|||++|....+.++..+...++ ....+...-...++..+++.|+. |.-.
T Consensus 506 ~~~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCce
Confidence 345566666655443 457999999999999999988875432 11222222222568889999964 4667
Q ss_pred EEEec--CCccccccCCC--CCeeEEcCCCC-Ch------------------------------hHHHHHhhccCCCCCC
Q 003100 690 ILVTS--DVSARGMDYPD--VTSVVQVGIPP-DR------------------------------EQYIHRLGRTGREGKE 734 (848)
Q Consensus 690 VLVaT--dvl~rGlDip~--V~~VI~yd~P~-s~------------------------------~~yiQRiGRaGR~G~~ 734 (848)
||+|+ ..++.|||+++ +++||.+++|. ++ ....|.+||+-|....
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999998 78899999884 11 1225899999997654
Q ss_pred ceEEEEe
Q 003100 735 GEGVLLL 741 (848)
Q Consensus 735 G~~i~l~ 741 (848)
=-+++|+
T Consensus 665 ~G~iill 671 (705)
T TIGR00604 665 YGSIVLL 671 (705)
T ss_pred eEEEEEE
Confidence 3344444
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.44 E-value=2.9e-13 Score=117.37 Aligned_cols=81 Identities=37% Similarity=0.591 Sum_probs=77.0
Q ss_pred HHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCC
Q 003100 652 LLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGRE 731 (848)
Q Consensus 652 ~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~ 731 (848)
.++..|...++.+..+||.++..+|..++..|.++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003100 732 G 732 (848)
Q Consensus 732 G 732 (848)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.43 E-value=1.3e-11 Score=148.63 Aligned_cols=329 Identities=20% Similarity=0.174 Sum_probs=184.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhC--------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 391 IKALTAAGYIQMTRVQEATLSACLE--------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~--------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
.+.+.+.--..-+.+|-+|+..+.. |-=+|-.|.||||||++ =.-|+..|.. ...|++..|-.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd--------~~~g~RfsiAL 468 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRD--------DKQGARFAIAL 468 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCC--------CCCCceEEEEc
Confidence 3444433334456799999887764 22245679999999997 2223333321 12355788888
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhh----h------------------------------------
Q 003100 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR----R------------------------------------ 502 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~----~------------------------------------ 502 (848)
-.|.|-.|.-..+++.++-. .-...+++|+..+..-.. .
T Consensus 469 GLRTLTLQTGda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l 547 (1110)
T TIGR02562 469 GLRSLTLQTGHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIEL 547 (1110)
T ss_pred cccceeccchHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhh
Confidence 88888888888888776432 233455555533221100 0
Q ss_pred ---hhc-------CCCcEEEeChHHHHHHHHhcc--CcccccC--CccEEEEecccccccccchhhHHHHHHhcC-ccce
Q 003100 503 ---LES-------DPCQILVATPGRLLDHIENKS--GLSVRLM--GLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQ 567 (848)
Q Consensus 503 ---l~~-------~~~~IIV~TPgrLl~~L~~~~--~~~~~l~--~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~-~~~Q 567 (848)
+.. -...|+|||+..++....... .....+- .-+.|||||+|.+-... ...+..++..+. -...
T Consensus 548 ~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~ 626 (1110)
T TIGR02562 548 LGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSR 626 (1110)
T ss_pred hhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCC
Confidence 000 036799999999987764321 1111111 13679999999865432 222333333221 2578
Q ss_pred eEEEeccCChHHHHHHH-HH----------hcc---ceEE----EeecCCCcc--c----------------------cc
Q 003100 568 SLLFSATMPKEVRRISQ-LV----------LKR---EHTY----IDTVGLGSV--E----------------------TP 605 (848)
Q Consensus 568 ~ll~SATl~~~v~~l~~-~~----------l~~---~~~~----i~~~~~~~~--~----------------------~~ 605 (848)
+++||||+|+.+..... .+ ... +..+ ++....... . .+
T Consensus 627 VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p 706 (1110)
T TIGR02562 627 VLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKP 706 (1110)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999987655332 22 111 1111 111000000 0 00
Q ss_pred ceeecccccCCh-----hhHHHHHHHHH--------HHHhhCC--CCce---EEEEEecchHHHHHHHHHHHh------c
Q 003100 606 VKIKQSCLVAPH-----ELHFQILHHLL--------KEHILGT--PDYK---VIVFCSTGMVTSLLYLLLREM------K 661 (848)
Q Consensus 606 ~~v~q~~~~~~~-----~~k~~~L~~lL--------~~~~~~~--~~~k---iLVF~~s~~~a~~l~~~L~~~------~ 661 (848)
..-+-..+.++. ......+...+ ..+.... .+++ .+|-+++++.+..++..|... .
T Consensus 707 ~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~ 786 (1110)
T TIGR02562 707 VRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQ 786 (1110)
T ss_pred ccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCc
Confidence 000000111111 11222222222 1221111 2223 266677788777777777544 3
Q ss_pred cceeeecCCcchhhHHHHHHHH----------------------hc----CCceEEEecCCccccccCCCCCeeEEcCCC
Q 003100 662 MNVREMYSRKPQLYRDRISEEF----------------------RA----SKRLILVTSDVSARGMDYPDVTSVVQVGIP 715 (848)
Q Consensus 662 ~~v~~lhg~ls~~~R~~i~~~F----------------------~~----G~~~VLVaTdvl~rGlDip~V~~VI~yd~P 715 (848)
+.+++||+..+...|..+.+.. .+ +...|+|+|.+++.|+|+ +.+++|- -|
T Consensus 787 i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~ 863 (1110)
T TIGR02562 787 IHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DP 863 (1110)
T ss_pred eeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--cc
Confidence 5689999999888877766543 11 356899999999999999 6777653 45
Q ss_pred CChhHHHHHhhccCCCCC
Q 003100 716 PDREQYIHRLGRTGREGK 733 (848)
Q Consensus 716 ~s~~~yiQRiGRaGR~G~ 733 (848)
.+..+.+||+||+.|.|.
T Consensus 864 ~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 864 SSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CcHHHHHHHhhccccccc
Confidence 678999999999999774
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2.8e-11 Score=145.03 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC-ceEEEe
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RLILVT 693 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~VLVa 693 (848)
.....|+..+..-+...+. .+.+|||-+.|++..+.+...|...+++.-++++..-..+-..+- ..|. -.|.||
T Consensus 608 ~t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIA 682 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIA 682 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEe
Confidence 3445667766666665543 567999999999999999999999999988888875433332222 2343 569999
Q ss_pred cCCccccccCC--------CCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 694 SDVSARGMDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 694 Tdvl~rGlDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
|++++||.||. +==+||--..+.|..---|-.||+||-|.+|.+-.|++-.|.
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999999996 223788888999999999999999999999999999886653
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.35 E-value=1.1e-10 Score=127.88 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=87.5
Q ss_pred ceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC-CceE-EEecCCccccccCCCCCeeEEcCCC
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS-KRLI-LVTSDVSARGMDYPDVTSVVQVGIP 715 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G-~~~V-LVaTdvl~rGlDip~V~~VI~yd~P 715 (848)
-+.|||..-....+.+.-.|.+.|+.+.-+.|+|++..|..+++.|++. ++.| |++-.+.+.-+|+....+|+.+|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 3667777766677777777777899999999999999999999999975 4554 6677888889999999999999999
Q ss_pred CChhHHHHHhhccCCCCC--CceEEEEeCc
Q 003100 716 PDREQYIHRLGRTGREGK--EGEGVLLLAP 743 (848)
Q Consensus 716 ~s~~~yiQRiGRaGR~G~--~G~~i~l~~~ 743 (848)
++++--.|...|..|.|+ +=.++.|+..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 999998998888888885 4566666654
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.34 E-value=6.4e-11 Score=134.16 Aligned_cols=123 Identities=13% Similarity=0.157 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCce-EEEecCCc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL-ILVTSDVS 697 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~-VLVaTdvl 697 (848)
.|+..|..+|...- ..++++|+|+...++...+.++|...++....+.|.....+|..+...|...++- +|++|.+.
T Consensus 1028 gKL~~LDeLL~kLk--aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLK--AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cceeeHHHHHHHhh--cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 34555666665542 4678999999999999999999999999999999999999999999999987754 58899999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCc--eEEEEeCc
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEG--EGVLLLAP 743 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G--~~i~l~~~ 743 (848)
+.|||+...+.||.||..+++.--.|.+.||.|.|+.- .++.+++.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 99999999999999999999999999999999999754 34555543
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.30 E-value=6.7e-11 Score=141.06 Aligned_cols=136 Identities=16% Similarity=0.107 Sum_probs=91.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---
Q 003100 423 AKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD--- 499 (848)
Q Consensus 423 a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~--- 499 (848)
+-+|||||.+|+-.+- ..+..+ -.+|||+|...|+.|+...|...+. ...+..++++......
T Consensus 167 ~~~GSGKTevyl~~i~-~~l~~G----------k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 167 ALPGEDWARRLAAAAA-ATLRAG----------RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred cCCCCcHHHHHHHHHH-HHHHcC----------CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHH
Confidence 3369999999776544 444332 2699999999999999999998874 2346677776554433
Q ss_pred hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc---chhhHHHH--HHhcCccceeEEEecc
Q 003100 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVENI--VDCLPRRRQSLLFSAT 574 (848)
Q Consensus 500 ~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g---f~~~l~~I--l~~l~~~~Q~ll~SAT 574 (848)
...+..+.+.|||+|- +.....+.++.+|||||-|.-.-.. .+-+...+ +.....+..+|+.|||
T Consensus 233 w~~~~~G~~~IViGtR----------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaT 302 (665)
T PRK14873 233 WLAVLRGQARVVVGTR----------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHA 302 (665)
T ss_pred HHHHhCCCCcEEEEcc----------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCC
Confidence 3344566789999993 3335678899999999999654221 22222222 2223356789999999
Q ss_pred CChHHHHH
Q 003100 575 MPKEVRRI 582 (848)
Q Consensus 575 l~~~v~~l 582 (848)
.+-+....
T Consensus 303 PSles~~~ 310 (665)
T PRK14873 303 RTAEAQAL 310 (665)
T ss_pred CCHHHHHH
Confidence 87665443
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.27 E-value=3.5e-10 Score=133.40 Aligned_cols=291 Identities=17% Similarity=0.189 Sum_probs=175.7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
..-.+|.||+|||||.+. +.-+...+.. +..++|+|.-++.|+.+++..++...- .++....-..+..
T Consensus 49 ~~V~vVRSpMGTGKTtaL-i~wLk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~ 116 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTAL-IRWLKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYI 116 (824)
T ss_pred CCeEEEECCCCCCcHHHH-HHHHHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccc
Confidence 345679999999999973 3333333221 123799999999999999998876521 1222111111111
Q ss_pred hhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhH------HH-HHHhcCcccee
Q 003100 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV------EN-IVDCLPRRRQS 568 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l------~~-Il~~l~~~~Q~ 568 (848)
+.....+-++++.+.|.++-.. .+.++++|||||+-.++..=|.+.+ .. +...+.....+
T Consensus 117 -------i~~~~~~rLivqIdSL~R~~~~------~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~V 183 (824)
T PF02399_consen 117 -------IDGRPYDRLIVQIDSLHRLDGS------LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTV 183 (824)
T ss_pred -------ccccccCeEEEEehhhhhcccc------cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeE
Confidence 1112357778888887665422 3567999999999987654232222 22 23345566789
Q ss_pred EEEeccCChHHHHHHHHHhccce-EEE-eec-CCCcccccc---------------------------------eeeccc
Q 003100 569 LLFSATMPKEVRRISQLVLKREH-TYI-DTV-GLGSVETPV---------------------------------KIKQSC 612 (848)
Q Consensus 569 ll~SATl~~~v~~l~~~~l~~~~-~~i-~~~-~~~~~~~~~---------------------------------~v~q~~ 612 (848)
|++-||+....-.+...+..... .+| ... ..+-..... ......
T Consensus 184 I~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (824)
T PF02399_consen 184 IVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAA 263 (824)
T ss_pred EEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccc
Confidence 99999999998888887643222 111 110 000000000 000000
Q ss_pred ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEE
Q 003100 613 LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV 692 (848)
Q Consensus 613 ~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLV 692 (848)
+ .......+..++.. + ..+++|.||++|...++.+++........+..++|..+..+. +. =++.+|++
T Consensus 264 ~---~~~~~tF~~~L~~~-L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~Vvi 331 (824)
T PF02399_consen 264 I---SNDETTFFSELLAR-L--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVI 331 (824)
T ss_pred c---ccchhhHHHHHHHH-H--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEE
Confidence 0 01111222222332 2 246789999999999999999999888899999887665522 11 36789999
Q ss_pred ecCCccccccCCCCCe--eEEcCCC----CChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 693 TSDVSARGMDYPDVTS--VVQVGIP----PDREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 693 aTdvl~rGlDip~V~~--VI~yd~P----~s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
.|.++..|+++-...+ |.-|=-| .+..+..|++||.-... ....++.+...
T Consensus 332 YT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 332 YTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 9999999999965433 3333223 24556899999995543 55666666543
No 160
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.18 E-value=2.7e-10 Score=132.33 Aligned_cols=322 Identities=19% Similarity=0.202 Sum_probs=199.5
Q ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 003100 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (848)
Q Consensus 403 t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~ 482 (848)
-.+-...+.++..+..+++.+.||+|||..+.--+|+.+....... -.-+.+..|||-.+.-+++++.+.-...
T Consensus 380 a~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~------~~na~v~qprrisaisiaerva~er~e~ 453 (1282)
T KOG0921|consen 380 AQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA------SFNAVVSQPRRISAISLAERVANERGEE 453 (1282)
T ss_pred HHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc------cccceeccccccchHHHHHHHHHhhHHh
Confidence 3344556667777888999999999999998877888777654321 1236788899999888888776553221
Q ss_pred CCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc-cchhhHHHHHHh
Q 003100 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDC 561 (848)
Q Consensus 483 ~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~ 561 (848)
.+-.|++ +.......-... --|.+||-|.+++.+.+. +..+.++|+||.|+.--. .|.-.+..=+..
T Consensus 454 ~g~tvgy-----~vRf~Sa~prpy-g~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~~ 521 (1282)
T KOG0921|consen 454 VGETCGY-----NVRFDSATPRPY-GSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMIS 521 (1282)
T ss_pred hcccccc-----cccccccccccc-cceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhhc
Confidence 1111111 111111111111 268999999999999876 567899999999985422 233333322223
Q ss_pred cCccceeEEEeccCChHHH--------------------HHHHHHhccceEEEeecCC--------Ccccccce--eecc
Q 003100 562 LPRRRQSLLFSATMPKEVR--------------------RISQLVLKREHTYIDTVGL--------GSVETPVK--IKQS 611 (848)
Q Consensus 562 l~~~~Q~ll~SATl~~~v~--------------------~l~~~~l~~~~~~i~~~~~--------~~~~~~~~--v~q~ 611 (848)
..+...+++||||+..+.. .+....+..+...+..... .....+.. -+..
T Consensus 522 ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~ 601 (1282)
T KOG0921|consen 522 TYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNM 601 (1282)
T ss_pred cchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccc
Confidence 3345556666666543221 1111111000000000000 00000000 0000
Q ss_pred ----------------cccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-------ccceeeec
Q 003100 612 ----------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-------KMNVREMY 668 (848)
Q Consensus 612 ----------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-------~~~v~~lh 668 (848)
+........+.++..++.......-.+-++||.+.....-.|...|... .+.+..+|
T Consensus 602 n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~H 681 (1282)
T KOG0921|consen 602 NILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLH 681 (1282)
T ss_pred ccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccch
Confidence 0001111223444444444444455678999999999998888877554 46789999
Q ss_pred CCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCC------------------CChhHHHHHhhccCC
Q 003100 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------------------PDREQYIHRLGRTGR 730 (848)
Q Consensus 669 g~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P------------------~s~~~yiQRiGRaGR 730 (848)
+.+...++.++++....|..++++.|.++...+.+-++.+||+.+.- .+....+||.||+||
T Consensus 682 sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr 761 (1282)
T KOG0921|consen 682 SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR 761 (1282)
T ss_pred hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCce
Confidence 99999999999999999999999999999999999998988865532 255677999999999
Q ss_pred CCCCceEEEEeCc
Q 003100 731 EGKEGEGVLLLAP 743 (848)
Q Consensus 731 ~G~~G~~i~l~~~ 743 (848)
. ++|.|..+++.
T Consensus 762 v-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 762 V-RPGFCFHLCSR 773 (1282)
T ss_pred e-cccccccccHH
Confidence 5 57888888764
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.17 E-value=1.8e-09 Score=123.24 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc--CCceE-EEecCC
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA--SKRLI-LVTSDV 696 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~--G~~~V-LVaTdv 696 (848)
++..+..++... ......+++|...=......+...|.+.|+.+..+||.....+|..+++.|.. |...| |++-.+
T Consensus 730 Ki~~~l~~le~i-~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 730 KIAMVLEILETI-LTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred HHHHHHHHHHHH-hhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 444555555554 23345566666555556677778888899999999999999999999999973 44455 566678
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEE
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 739 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 739 (848)
.+.|+|+-+.+|+|..|+-|+++-=-|..-|.-|.|+...+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8899999999999999999999999999999999998766554
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.07 E-value=6.3e-09 Score=130.11 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=102.0
Q ss_pred hHHHHHHHHH-HHHhhCCCCc--eEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC--CceEEEe
Q 003100 619 LHFQILHHLL-KEHILGTPDY--KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS--KRLILVT 693 (848)
Q Consensus 619 ~k~~~L~~lL-~~~~~~~~~~--kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G--~~~VLVa 693 (848)
.+...+..++ ..... .+. ++|||++.......+...|...++.++.++|.++...|...+..|.++ ...+|++
T Consensus 692 ~k~~~l~~ll~~~~~~--~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLLE--EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHHh--hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 4556666666 33332 344 999999999999999999999998999999999999999999999986 4567888
Q ss_pred cCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEE
Q 003100 694 SDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 739 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 739 (848)
|.+++.|+|+...++||+||+.++++...|...|+.|.|+...+.+
T Consensus 770 ~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 770 LKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred ecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 8999999999999999999999999999999999999997665443
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.99 E-value=3e-09 Score=115.81 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=92.7
Q ss_pred HHHHHHHHHh-------------CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 405 VQEATLSACL-------------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 405 iQ~~aI~~il-------------~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
+|.+++..++ ..+.+|++..+|+|||+. .+.++..+......... -.+|||+|. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~-~i~~~~~l~~~~~~~~~-----~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTIT-AIALISYLKNEFPQRGE-----KKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHH-HHHHHHHHHHCCTTSS------S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhh-hhhhhhhhhhccccccc-----cceeEeecc-chhhhh
Confidence 5777776652 346789999999999997 44455555544322110 148999999 788999
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc
Q 003100 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (848)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf 551 (848)
..++.+++... .+.+..+.|.......... .....+|+|+|++.+...........+.-.++++||+||+|.+-+.
T Consensus 74 ~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~-- 149 (299)
T PF00176_consen 74 KEEIEKWFDPD-SLRVIIYDGDSERRRLSKN-QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK-- 149 (299)
T ss_dssp HHHHHHHSGT--TS-EEEESSSCHHHHTTSS-SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--
T ss_pred hhhhccccccc-ccccccccccccccccccc-ccccceeeeccccccccccccccccccccccceeEEEecccccccc--
Confidence 99999987532 4566666666512211111 1234799999999998110000000111234899999999998543
Q ss_pred hhhHHHHHHhcCccceeEEEeccCC
Q 003100 552 RKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 552 ~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
.......+..+. ....+++|||+.
T Consensus 150 ~s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 150 DSKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TSHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccccccccccc-cceEEeeccccc
Confidence 333444444455 566788999963
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.98 E-value=2.5e-09 Score=102.21 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 494 (848)
.|+-.++-..+|+|||.-.+.-++...+..+ .++|||.|||.++..+++.+... .+.+..-.-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~----------~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRR----------LRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT------------EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHcc----------CeEEEecccHHHHHHHHHHHhcC-----CcccCceeeec
Confidence 3555688999999999974444555444432 47999999999999877665432 23322111110
Q ss_pred chhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc--chhhHHHHHHhcCccceeEEEe
Q 003100 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 495 ~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g--f~~~l~~Il~~l~~~~Q~ll~S 572 (848)
-..++.-|-|+|.+.+.+.+.+. ..+.++++||+||||..-... ++..+...... ....+|+||
T Consensus 68 --------~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mT 133 (148)
T PF07652_consen 68 --------THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMT 133 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEE
T ss_pred --------cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEe
Confidence 01234578899999998888764 346789999999999854322 33333333221 235799999
Q ss_pred ccCChHH
Q 003100 573 ATMPKEV 579 (848)
Q Consensus 573 ATl~~~v 579 (848)
||+|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9998754
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.97 E-value=3.4e-08 Score=115.53 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----------------------ccceeeecCCcchhhHHHH
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----------------------KMNVREMYSRKPQLYRDRI 679 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----------------------~~~v~~lhg~ls~~~R~~i 679 (848)
-+|+.+|... ..-+.+.|||..+......+..+|... |...+.|.|.....+|...
T Consensus 1129 iLLleIL~mc--eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1129 ILLLEILRMC--EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ehHHHHHHHH--HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 3445555432 124569999999999988888888642 4568899999999999999
Q ss_pred HHHHhcCC----ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEE
Q 003100 680 SEEFRASK----RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 739 (848)
Q Consensus 680 ~~~F~~G~----~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 739 (848)
...|.+-. ...||+|.+.+.|||+-..+.||+||..|++.--+|-|=|+-|.|+.--||+
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 99998642 4579999999999999999999999999999999999999999997665554
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.91 E-value=1.1e-08 Score=111.26 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCCCCcHHHHHHH----HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 003100 398 GYIQMTRVQEATL----SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (848)
Q Consensus 398 g~~~~t~iQ~~aI----~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~ 473 (848)
.|. ++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 454 599999954 55567899999999999999999999998776543210 22378999999999888877
Q ss_pred HHHHH
Q 003100 474 EAIAL 478 (848)
Q Consensus 474 ~l~~l 478 (848)
.+++.
T Consensus 80 ~l~~~ 84 (289)
T smart00489 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.91 E-value=1.1e-08 Score=111.26 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCCCCcHHHHHHH----HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHH
Q 003100 398 GYIQMTRVQEATL----SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (848)
Q Consensus 398 g~~~~t~iQ~~aI----~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~ 473 (848)
.|. ++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHH
Confidence 454 599999954 55567899999999999999999999998776543210 22378999999999888877
Q ss_pred HHHHH
Q 003100 474 EAIAL 478 (848)
Q Consensus 474 ~l~~l 478 (848)
.+++.
T Consensus 80 ~l~~~ 84 (289)
T smart00488 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.90 E-value=4.7e-07 Score=113.02 Aligned_cols=315 Identities=17% Similarity=0.151 Sum_probs=168.4
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 496 (848)
+..+|+--||||||+. ++-+.+.+.+.. ..+.+++|+-+++|-.|+.+.+..+...... .. ...+.
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~~--------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~--~~---~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLELP--------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN--DP---KAEST 339 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhcc--------CCCeEEEEechHHHHHHHHHHHHHHHHhhhh--cc---cccCH
Confidence 4689999999999997 333444444431 1247999999999999999999998653211 11 23333
Q ss_pred hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 497 ~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
..-...+....-.|||||-+.|-..+....... .-.+-=+||+||||+-- ++..-..+-..+ ++...++||.|+-
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~-~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELEL-LKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccc-cCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcc
Confidence 333344443445899999999988776541111 12233479999999832 222222233333 3478899999973
Q ss_pred hHHHHH-HHHHhccc---eEEEeecCCCcc-cccceee-----------cc---------------------------cc
Q 003100 577 KEVRRI-SQLVLKRE---HTYIDTVGLGSV-ETPVKIK-----------QS---------------------------CL 613 (848)
Q Consensus 577 ~~v~~l-~~~~l~~~---~~~i~~~~~~~~-~~~~~v~-----------q~---------------------------~~ 613 (848)
-.-..- ....+... +.+.+.+..... ....... .. +.
T Consensus 415 ~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 494 (962)
T COG0610 415 FKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFL 494 (962)
T ss_pred ccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHH
Confidence 221111 01111110 001111110000 0000000 00 00
Q ss_pred cCChhhHHHHHHHHHHHHhh-CCCCceEEEEEecchHHHHHHHHHHHhcc---------c--------------eeeecC
Q 003100 614 VAPHELHFQILHHLLKEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREMKM---------N--------------VREMYS 669 (848)
Q Consensus 614 ~~~~~~k~~~L~~lL~~~~~-~~~~~kiLVF~~s~~~a~~l~~~L~~~~~---------~--------------v~~lhg 669 (848)
.............+...... ...+.++++.|.++..+..+++.+..... . ....|.
T Consensus 495 ~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 574 (962)
T COG0610 495 AMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHA 574 (962)
T ss_pred hcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhH
Confidence 00000001111111111111 34566888888888866666655433210 0 000011
Q ss_pred CcchhhHHHHHHHH--hcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC----CCceEEEEeCc
Q 003100 670 RKPQLYRDRISEEF--RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG----KEGEGVLLLAP 743 (848)
Q Consensus 670 ~ls~~~R~~i~~~F--~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G----~~G~~i~l~~~ 743 (848)
.. ...+.....+| .....++||-++++-+|.|.|.+..+. +|-|.-....+|.+-||.|.- ..|..+-|..
T Consensus 575 ~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g- 651 (962)
T COG0610 575 KL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG- 651 (962)
T ss_pred HH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-
Confidence 11 12233344443 345689999999999999999887654 788888889999999999953 2344444444
Q ss_pred chhhHHHHhc
Q 003100 744 WEEYFLDDLK 753 (848)
Q Consensus 744 ~e~~~l~~L~ 753 (848)
....+.+.+.
T Consensus 652 l~e~l~~Al~ 661 (962)
T COG0610 652 LKEALKKALK 661 (962)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.88 E-value=7.1e-08 Score=114.96 Aligned_cols=325 Identities=21% Similarity=0.267 Sum_probs=191.3
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
++++-.|.+-.+.-+..-|+-+.||-|||++..+|+.-..+.+. .+.+++..--||.--+++...++.+
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHH
Confidence 44444556666666677899999999999999999864333221 4678888889999888888888876
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhc---cCcccccCCccEEEEeccccccc---------
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENK---SGLSVRLMGLKMLVLDEADHLLD--------- 548 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~---~~~~~~l~~l~~lVIDEAH~ll~--------- 548 (848)
. ++.+++...+.......... .|||.++|-..| .++|..+ .........+.+.|+||+|.++-
T Consensus 148 L-GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 148 L-GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred c-CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 5 89999988888655444433 389999997665 2222221 00012234678899999997641
Q ss_pred cc-------chhhHHHHHHhcCcc--------ceeEEEecc-C--------------ChHH------HHH--HHHHhccc
Q 003100 549 LG-------FRKDVENIVDCLPRR--------RQSLLFSAT-M--------------PKEV------RRI--SQLVLKRE 590 (848)
Q Consensus 549 ~g-------f~~~l~~Il~~l~~~--------~Q~ll~SAT-l--------------~~~v------~~l--~~~~l~~~ 590 (848)
.| ....+..++..+... .+.+.++-. + +..+ ... +..++..+
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 11 122333333322211 011111100 0 0000 000 00001111
Q ss_pred eEE---------Eeec----------------------------------------------------------------
Q 003100 591 HTY---------IDTV---------------------------------------------------------------- 597 (848)
Q Consensus 591 ~~~---------i~~~---------------------------------------------------------------- 597 (848)
..+ ++..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 111 0000
Q ss_pred --CCC--cccccceee----cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecC
Q 003100 598 --GLG--SVETPVKIK----QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYS 669 (848)
Q Consensus 598 --~~~--~~~~~~~v~----q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg 669 (848)
+.. ..++..++. ...+......|+..+...+...+. .+.++||-+.+.+..+.+.+.|.+.+++...+..
T Consensus 384 iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~--~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 384 IYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHE--KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred ccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHh--cCCCEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 000 000000000 011223345677766666665543 4679999999999999999999999998888887
Q ss_pred CcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCC-----------eeEEcCCCCChhHHHHHhhccCCCCCCceEE
Q 003100 670 RKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVT-----------SVVQVGIPPDREQYIHRLGRTGREGKEGEGV 738 (848)
Q Consensus 670 ~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~-----------~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i 738 (848)
.-. .|+.-+-.+.--.-.|-|||++++||-||.=-. +||--..-.|..---|--||+||-|.+|.+.
T Consensus 462 k~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 462 KNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred ccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh
Confidence 755 333333333333346899999999999984222 2333333344444459999999999999998
Q ss_pred EEeCcch
Q 003100 739 LLLAPWE 745 (848)
Q Consensus 739 ~l~~~~e 745 (848)
.+++-.+
T Consensus 540 F~lSleD 546 (822)
T COG0653 540 FYLSLED 546 (822)
T ss_pred hhhhhHH
Confidence 8877554
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.69 E-value=2.7e-07 Score=98.44 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=96.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|+ .|+++|.-++-.+..|+ |+...||-|||++..+|++-..+.+ ..|-|++....||..-++++.
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHH
Confidence 454 48999998888777766 9999999999999888876555432 258899999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHH-HHHHhccCc---ccccCCccEEEEecccccc
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSGL---SVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl-~~L~~~~~~---~~~l~~l~~lVIDEAH~ll 547 (848)
.++... |+.+.+.+.+........... ++|+++|...|. ++|...... ......+.++||||||.++
T Consensus 140 ~~y~~L-Glsv~~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFL-GLSVGIITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHT-T--EEEEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHh-hhccccCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999876 999999999887554333333 689999999884 455543111 1124678999999999875
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.39 E-value=2.5e-05 Score=90.43 Aligned_cols=105 Identities=10% Similarity=0.166 Sum_probs=87.9
Q ss_pred ceEEEEEecchHHHHHHHHHHHh------------------ccceeeecCCcchhhHHHHHHHHhcC--C-ceEEEecCC
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREM------------------KMNVREMYSRKPQLYRDRISEEFRAS--K-RLILVTSDV 696 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~------------------~~~v~~lhg~ls~~~R~~i~~~F~~G--~-~~VLVaTdv 696 (848)
.++|||..+......+.+.|.+. ....+.+.|..+..+|++++.+|.+- - -.+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 47899999888888888888764 23456788999999999999999853 2 367899999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
...|||+-..+-+|.||..+++-.-.|.+-|.-|-|+...|+++=.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 9999999999999999999999999999999999998877776543
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.38 E-value=3.6e-06 Score=102.80 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=52.7
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC--CCc-------e-EEEEeCcchhhHHHHhcc
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEG-------E-GVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G-------~-~i~l~~~~e~~~l~~L~~ 754 (848)
..+.|++-+++..|-|-|+|=.+.-..-..|...-.|.+||.-|.- ..| . -.+++...+..|...|++
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 5789999999999999999988888888888888899999998842 122 1 223445667788877754
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.30 E-value=1.4e-07 Score=112.43 Aligned_cols=232 Identities=18% Similarity=0.186 Sum_probs=136.3
Q ss_pred CCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 401 QMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
...|+|.+.+..+.. ..++++.+|||+|||++|-+.++..+...+ +.+++|++|-.+|+..-.+......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---------~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP---------GSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC---------CccEEEEcCCchhhcccccchhhhc
Confidence 345566666544333 467889999999999999998876654432 3479999999999998888777765
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHH
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
.. +|+.+.-++|+.... ..... .++|+|+||++.-.+..+... .-.+.+++.+|+||.|.+.+- ..+.++-|.
T Consensus 998 ~~-~g~k~ie~tgd~~pd--~~~v~--~~~~~ittpek~dgi~Rsw~~-r~~v~~v~~iv~de~hllg~~-rgPVle~iv 1070 (1230)
T KOG0952|consen 998 EL-PGIKVIELTGDVTPD--VKAVR--EADIVITTPEKWDGISRSWQT-RKYVQSVSLIVLDEIHLLGED-RGPVLEVIV 1070 (1230)
T ss_pred cc-CCceeEeccCccCCC--hhhee--cCceEEcccccccCccccccc-hhhhccccceeecccccccCC-CcceEEEEe
Confidence 44 388888888876643 22222 279999999998777664322 233678999999999987553 344433332
Q ss_pred Hh-------cCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc------CCh-hhHHHHHH
Q 003100 560 DC-------LPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV------APH-ELHFQILH 625 (848)
Q Consensus 560 ~~-------l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~------~~~-~~k~~~L~ 625 (848)
.. ..+..+.+.+|--+ .....++.++...+. .+......+.++..++.- ++. .....-..
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~-~na~dla~wl~~~~~-----~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~ 1144 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-----YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAF 1144 (1230)
T ss_pred eccccCccccCcchhhhhHhhhh-hccHHHHHHhCCCCc-----CCCCcccccCCceEeecCCCchhcchhhhhcccHHH
Confidence 22 22344555554322 233344544432221 011111111111111111 110 11111223
Q ss_pred HHHHHHhhCCCCceEEEEEecchHHHHHHHHH
Q 003100 626 HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLL 657 (848)
Q Consensus 626 ~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L 657 (848)
..++. ..|..++|||+.++.....-+..|
T Consensus 1145 qaik~---~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1145 QAIKT---HSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred HHHhc---CCCCCceEEEeecccccccchHhH
Confidence 33333 368889999999987765444433
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.12 E-value=5.5e-05 Score=92.48 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=31.1
Q ss_pred CcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 508 ~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
..|+++||..|..-|-.. .+.+..+..|||||||++...
T Consensus 8 ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~ 46 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIES 46 (814)
T ss_pred CCEEEEechhhHhHHhcC---CCCHHHccEEEEeeccccccc
Confidence 479999999986555444 377889999999999997654
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.05 E-value=5.2e-05 Score=78.99 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
++.+.|.+|+..++.... ++|.||.|||||.+ +..++..++.... ......+.++|+++||...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 99999999999975 4445555532100 00012234799999999999999988887
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.01 E-value=0.00053 Score=81.40 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=55.5
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCC--CCceE-----------EEEeCcchhhHHHHhc
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREG--KEGEG-----------VLLLAPWEEYFLDDLK 753 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G--~~G~~-----------i~l~~~~e~~~l~~L~ 753 (848)
..++|++--++-.|-|-|+|=.++-.....|..+=.|.+||.-|.. ..|.- .+++...+..|++.|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999942 33432 3456667888888776
Q ss_pred c
Q 003100 754 D 754 (848)
Q Consensus 754 ~ 754 (848)
+
T Consensus 563 k 563 (985)
T COG3587 563 K 563 (985)
T ss_pred H
Confidence 4
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.91 E-value=7e-05 Score=77.80 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=83.1
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLE---GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 381 f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~---g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
|+-...+..++=.+. .++ -+++.|.++...+.+ |.+.+.+.-+|.|||.+ ++|++..++..+.. .
T Consensus 5 w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------L 72 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------L 72 (229)
T ss_pred CCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc---------E
Confidence 444444444433332 233 389999999988876 57999999999999998 99999888765422 4
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh------hh----hhhcCCCcEEEeChHHHHHH
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD------QR----RLESDPCQILVATPGRLLDH 521 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~------~~----~l~~~~~~IIV~TPgrLl~~ 521 (848)
+.+++| ++|..|.++.+...++..-+-.+..+--....... .. ..... -.|+++||+.++.+
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf 144 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSF 144 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHH
Confidence 667777 58999999988887765444444443322222111 11 11122 36999999988654
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.90 E-value=3.4e-05 Score=77.30 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=72.0
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhcc--ceeeecCCcchhhHHHHHHHHhcCCceEEEecC--CccccccCCC--CCee
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKM--NVREMYSRKPQLYRDRISEEFRASKRLILVTSD--VSARGMDYPD--VTSV 709 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~--~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd--vl~rGlDip~--V~~V 709 (848)
.++++|||++|....+.++..+..... .+..+.. ....+..+++.|+.+...||+++. .+..|||+|+ +++|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 458999999999999999999876532 2233333 356789999999999999999998 9999999997 7789
Q ss_pred EEcCCCC----Ch--------------------------hHHHHHhhccCCCCCCceEEEEeC
Q 003100 710 VQVGIPP----DR--------------------------EQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 710 I~yd~P~----s~--------------------------~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
|..++|. ++ ....|.+||+-|....--+++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 9999883 11 122588999999765433444443
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.89 E-value=5e-05 Score=78.10 Aligned_cols=126 Identities=23% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCcHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~--dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
+|++-|.+++..++.+. -++++++.|+|||.+ +-.+...+... +.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~~--- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREKT--- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHhh---
Confidence 47889999999997543 467889999999985 33344444332 236999999998888765542
Q ss_pred hhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc-CcccccCCccEEEEecccccccccchhhHHH
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS-GLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~-~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~ 557 (848)
++.+..+ ..++....... .....+...++||||||-.+.. ..+..
T Consensus 67 -----~~~a~Ti-------------------------~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ 112 (196)
T PF13604_consen 67 -----GIEAQTI-------------------------HSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLAR 112 (196)
T ss_dssp -----TS-EEEH-------------------------HHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHH
T ss_pred -----CcchhhH-------------------------HHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHH
Confidence 1111111 11110000000 0000144567999999998743 45667
Q ss_pred HHHhcCc-cceeEEEecc
Q 003100 558 IVDCLPR-RRQSLLFSAT 574 (848)
Q Consensus 558 Il~~l~~-~~Q~ll~SAT 574 (848)
++..++. ..++|++--+
T Consensus 113 ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHhcCCEEEEECCc
Confidence 7777766 5666665433
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.77 E-value=8.8e-05 Score=76.33 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=71.4
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
+...+..|..++.+++..+-+++.||.|||||+..+..+++.+...... +++|+-|+.+... -
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~---------kiii~Rp~v~~~~--------~ 64 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD---------KIIITRPPVEAGE--------D 64 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S---------EEEEEE-S--TT----------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc---------EEEEEecCCCCcc--------c
Confidence 3457889999999999888899999999999999888888887664332 6788888754311 1
Q ss_pred hhcCCCceEE--------------EEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 479 LKNHDGIGVL--------------TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 479 ~~~~~~i~v~--------------~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
+++.|+-.-- .+.+... ...+.. ...|-+..+..+. . ..+. -.+||||||+
T Consensus 65 lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~-~~~Ie~~~~~~iR-----G----rt~~-~~~iIvDEaQ 129 (205)
T PF02562_consen 65 LGFLPGDLEEKMEPYLRPIYDALEELFGKEK----LEELIQ-NGKIEIEPLAFIR-----G----RTFD-NAFIIVDEAQ 129 (205)
T ss_dssp --SS---------TTTHHHHHHHTTTS-TTC----HHHHHH-TTSEEEEEGGGGT-----T------B--SEEEEE-SGG
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHhChHh----HHHHhh-cCeEEEEehhhhc-----C----cccc-ceEEEEeccc
Confidence 1111110000 0001111 111111 1244444433221 1 1122 3789999999
Q ss_pred ccccccchhhHHHHHHhcCccceeEEEe
Q 003100 545 HLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+. ..++..++..+..+.+++++-
T Consensus 130 N~t----~~~~k~ilTR~g~~skii~~G 153 (205)
T PF02562_consen 130 NLT----PEELKMILTRIGEGSKIIITG 153 (205)
T ss_dssp G------HHHHHHHHTTB-TT-EEEEEE
T ss_pred CCC----HHHHHHHHcccCCCcEEEEec
Confidence 874 457788899998888888764
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.65 E-value=0.00037 Score=75.05 Aligned_cols=175 Identities=18% Similarity=0.131 Sum_probs=106.5
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC----------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCC
Q 003100 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (848)
Q Consensus 383 ~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~----------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~ 452 (848)
.+.|++.++.. | .++..|.+++-.+.+ ..-.++-..||.||.-...--|++..++..
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr------- 91 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR------- 91 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-------
Confidence 34556554432 2 367888888765542 346788899999998764444566655442
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 453 ~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.++|.++.+-.|-....+.+..+... .+.+..+..-.. . ... .-.-.||++|+-.|...-........++
T Consensus 92 ---~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~-~-~~~---~~~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 92 ---KRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKY-G-DII---RLKEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred ---CceEEEECChhhhhHHHHHHHHhCCC--cccceechhhcc-C-cCC---CCCCCccchhHHHHHhHHhccCCccchH
Confidence 25899999999999999999888644 333332222100 0 001 1124799999998877653211111111
Q ss_pred C---------CccEEEEecccccccccc--------hhhHHHHHHhcCccceeEEEeccCChHHHH
Q 003100 533 M---------GLKMLVLDEADHLLDLGF--------RKDVENIVDCLPRRRQSLLFSATMPKEVRR 581 (848)
Q Consensus 533 ~---------~l~~lVIDEAH~ll~~gf--------~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~ 581 (848)
. .=.+||+||||...+..- ...+..+.+.+|. .+++.+|||-..+..+
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~N 226 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRN 226 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCce
Confidence 1 124899999999876532 1344445556654 4599999998665543
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.53 E-value=0.0012 Score=70.04 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=81.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH------
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ------ 470 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q------ 470 (848)
.++...+..|...+.++.++.-+++.|++|||||+..+..+++.+...... +++|.=|+.+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~---------kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVD---------RIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCee---------EEEEeCCCCCchhhhCcCCC
Confidence 466678899999999999888889999999999998665555555443211 46666666443211
Q ss_pred -HHHHHHHHhhcCC-CceEEEEeCCcchhHhhhhhh-cCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 471 -IAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLE-SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 471 -i~~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l~-~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
+.+.+..++.... .+ ..+.+... ...+. ...-.|-|+... +|... .| .-.+||||||+.+.
T Consensus 126 ~~~eK~~p~~~pi~D~L--~~~~~~~~----~~~~~~~~~~~Iei~~l~----ymRGr-----tl-~~~~vIvDEaqn~~ 189 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVL--VRRLGASF----MQYCLRPEIGKVEIAPFA----YMRGR-----TF-ENAVVILDEAQNVT 189 (262)
T ss_pred CHHHHHHHHHHHHHHHH--HHHhChHH----HHHHHHhccCcEEEecHH----HhcCC-----cc-cCCEEEEechhcCC
Confidence 1111111111000 00 00011111 11111 111235555422 22221 12 23789999999874
Q ss_pred cccchhhHHHHHHhcCccceeEEE
Q 003100 548 DLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 548 ~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
- .++..++..+..+.++|+.
T Consensus 190 ~----~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 190 A----AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred H----HHHHHHHhhcCCCCEEEEe
Confidence 3 5677788888888777764
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.42 E-value=0.00051 Score=77.22 Aligned_cols=108 Identities=16% Similarity=0.253 Sum_probs=65.5
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
-++|.|..|||||++ ++-++..+.... .+..++++++...|...+...+..... .
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~~--------~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------~----- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNSE--------EGKKVLYLCGNHPLRNKLREQLAKKYN-----------P----- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhccc--------cCCceEEEEecchHHHHHHHHHhhhcc-----------c-----
Confidence 468999999999997 444444441111 123689999999998877776655420 0
Q ss_pred HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-------chhhHHHHHHh
Q 003100 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-------FRKDVENIVDC 561 (848)
Q Consensus 498 ~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-------f~~~l~~Il~~ 561 (848)
......+..+..+...+... ......+++|||||||++...+ ....+..++..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~---~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSES---DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccc---cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00122344444444433311 1234678999999999998732 23556666665
No 184
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.0018 Score=79.31 Aligned_cols=131 Identities=20% Similarity=0.228 Sum_probs=79.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.++ .+++.|++|+..+..++-+++.++.|+|||.+ +-.++..+..... ...+++++||-..|..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~--------~~~v~l~ApTg~AA~~L~e~~- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG--------LLPVGLAAPTGRAAKRLGEVT- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC--------CceEEEEeCchHHHHHHHHhc-
Confidence 444 59999999999999999999999999999985 3333433332210 125788999988877554321
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc--CcccccCCccEEEEecccccccccchhh
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--GLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~--~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
+... .|-.+|+....... .........++||||||+++.. ..
T Consensus 389 -------g~~a-------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~ 432 (720)
T TIGR01448 389 -------GLTA-------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WL 432 (720)
T ss_pred -------CCcc-------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HH
Confidence 1110 11111111000000 0001123578999999998743 34
Q ss_pred HHHHHHhcCccceeEEEecc
Q 003100 555 VENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SAT 574 (848)
+..++..++...++|++--+
T Consensus 433 ~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 433 ALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHHHhCCCCCEEEEECcc
Confidence 56777788888888876433
No 185
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.38 E-value=0.0012 Score=78.98 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=87.7
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
..++|+.|+-..+.++-++|.|+.|+|||.+ +.-++..+.+... ..+..+++++||...|..+.+.+...+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 3589999999999999999999999999986 3334444433211 11246889999999999888776554322
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCc---ccccCCccEEEEecccccccccchhhHHHH
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~---~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
.+ + .. ..... ...-..|--+|+........+ ..+.-.+++||||||-++- ...+..+
T Consensus 226 ~~-~-----~~------~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~l 285 (615)
T PRK10875 226 LP-L-----TD------EQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARL 285 (615)
T ss_pred cc-c-----ch------hhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHH
Confidence 10 0 00 00000 011123333332221111000 1122356899999999762 3566778
Q ss_pred HHhcCccceeEEEec
Q 003100 559 VDCLPRRRQSLLFSA 573 (848)
Q Consensus 559 l~~l~~~~Q~ll~SA 573 (848)
+..+++..++|++--
T Consensus 286 l~al~~~~rlIlvGD 300 (615)
T PRK10875 286 IDALPPHARVIFLGD 300 (615)
T ss_pred HHhcccCCEEEEecc
Confidence 888999888888743
No 186
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.38 E-value=0.00062 Score=78.55 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=61.4
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 393 ALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 393 ~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.+...++.++..-|..|+.++|+..-.||++|.|+|||.+-. .|+-++.+... ..+|+++|+...+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~~~---------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQHA---------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHhcC---------CceEEEcccchhHHHHH
Confidence 445578888999999999999999999999999999999733 34445544321 25999999999999999
Q ss_pred HHHHHH
Q 003100 473 AEAIAL 478 (848)
Q Consensus 473 ~~l~~l 478 (848)
+.+.+.
T Consensus 472 eKIh~t 477 (935)
T KOG1802|consen 472 EKIHKT 477 (935)
T ss_pred HHHHhc
Confidence 888765
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.34 E-value=0.0018 Score=77.17 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 003100 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483 (848)
Q Consensus 404 ~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 483 (848)
..|+.|+..++.++-++|.|+.|+|||.+ +..++..+.+..... .+.++++++||-..|..+.+.+.......
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~~~l- 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAVKNL- 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhhccc-
Confidence 78999999999999999999999999986 344444444322110 12368999999999888777665543211
Q ss_pred CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCc---ccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 484 ~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~---~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
.. . .. ... ...+-..|-.+|+........+ ..+...+++||||||=++.. ..+..++.
T Consensus 221 --~~---~--~~---~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~ 281 (586)
T TIGR01447 221 --AA---A--EA---LIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLK 281 (586)
T ss_pred --cc---c--hh---hhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHH
Confidence 10 0 00 000 0112234434443222111001 01223579999999997632 45677888
Q ss_pred hcCccceeEEEec
Q 003100 561 CLPRRRQSLLFSA 573 (848)
Q Consensus 561 ~l~~~~Q~ll~SA 573 (848)
.+++..++|++--
T Consensus 282 al~~~~rlIlvGD 294 (586)
T TIGR01447 282 ALPPNTKLILLGD 294 (586)
T ss_pred hcCCCCEEEEECC
Confidence 8888888887643
No 188
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.27 E-value=0.0076 Score=75.47 Aligned_cols=126 Identities=23% Similarity=0.211 Sum_probs=75.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~d-vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
.|+ .+++-|.+++..++.+++ ++|.+..|+|||.+ +-.+. .+++.. +..++.++||--.|..+.+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~-~~~e~~---------G~~V~~~ApTGkAA~~L~e~- 409 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAR-EAWEAA---------GYEVRGAALSGIAAENLEGG- 409 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHH-HHHHHc---------CCeEEEecCcHHHHHHHhhc-
Confidence 454 499999999999998664 67999999999985 33333 333321 23689999997766554321
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhH
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l 555 (848)
.++.. .|-.+|+.-.... ...+...++||||||-++... .+
T Consensus 410 -------tGi~a-------------------------~TI~sll~~~~~~---~~~l~~~~vlIVDEASMv~~~----~m 450 (988)
T PRK13889 410 -------SGIAS-------------------------RTIASLEHGWGQG---RDLLTSRDVLVIDEAGMVGTR----QL 450 (988)
T ss_pred -------cCcch-------------------------hhHHHHHhhhccc---ccccccCcEEEEECcccCCHH----HH
Confidence 12211 1111111111111 123456789999999987543 34
Q ss_pred HHHHHhc-CccceeEEEecc
Q 003100 556 ENIVDCL-PRRRQSLLFSAT 574 (848)
Q Consensus 556 ~~Il~~l-~~~~Q~ll~SAT 574 (848)
..++... +...++||+--+
T Consensus 451 ~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 451 ERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred HHHHHhhhhCCCEEEEECCH
Confidence 4555533 456677776443
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.20 E-value=0.0012 Score=76.20 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.+.+-|.+|+....+.++ .++.||.|+|||..... ++..+.+.+. ++||+.||.+.+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~~k----------~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQKK----------RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHcCC----------eEEEEcCchHHHHHHHHHhc
Confidence 467889999999888865 46889999999998444 5555554432 79999999999998888643
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.14 E-value=0.0016 Score=56.32 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=40.1
Q ss_pred HHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 409 TLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 409 aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
+|...+. +.-++|.|+.|||||.. ++.++..+....... +-++||++||+.++.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~~------~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTT-LAARIAELLAARADP------GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCC------CCeEEEECCCHHHHHHHHHHH
Confidence 3443334 44456699999999976 455555555321111 126999999999999988877
No 191
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.09 E-value=0.0035 Score=75.42 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=88.5
Q ss_pred ceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCC-ce-EEEecCCccccccCCCCCeeEEcCCC
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASK-RL-ILVTSDVSARGMDYPDVTSVVQVGIP 715 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~-~~-VLVaTdvl~rGlDip~V~~VI~yd~P 715 (848)
.++|||+.-...+..+...|...++....+.|.|+...|.+.+..|..+. .. .|++.-+...|+|+-...+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 49999999998888888888888999999999999999999999999543 33 46678889999999999999999999
Q ss_pred CChhHHHHHhhccCCCCCCceEE
Q 003100 716 PDREQYIHRLGRTGREGKEGEGV 738 (848)
Q Consensus 716 ~s~~~yiQRiGRaGR~G~~G~~i 738 (848)
+++..=-|.+-|+.|.|+.-.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred cChHHHHHHHHHHHHhcccceee
Confidence 99999999999999998755444
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.06 E-value=0.0034 Score=75.09 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHH
Q 003100 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIE 439 (848)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~ 439 (848)
+|++.|...+..++ ...++++.+|||+|||++.+-..|.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LA 63 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLA 63 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH
Confidence 47999988776655 4678999999999999985544443
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0039 Score=71.59 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=74.1
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh
Q 003100 421 VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500 (848)
Q Consensus 421 v~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~ 500 (848)
..+.||||||++..- ++-++++.+.. ..|+.|..-....-....+..-....--+.-.+.+++..+.-..
T Consensus 2 f~matgsgkt~~ma~-lil~~y~kgyr---------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAG-LILECYKKGYR---------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHH-HHHHHHHhchh---------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 458999999998544 44455555443 35666665433333222221111000001112233333322111
Q ss_pred hhh---hcCCCcEEEeChHHHHHHHHhccCcccc---cCCcc-EEEEeccccccccc---------chhhHHHHHH---h
Q 003100 501 RRL---ESDPCQILVATPGRLLDHIENKSGLSVR---LMGLK-MLVLDEADHLLDLG---------FRKDVENIVD---C 561 (848)
Q Consensus 501 ~~l---~~~~~~IIV~TPgrLl~~L~~~~~~~~~---l~~l~-~lVIDEAH~ll~~g---------f~~~l~~Il~---~ 561 (848)
... ...+..|+++|.+.|...+.+.+.-.+. +.+.. +++-||||++.... -...|...+. .
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 110 2346789999999998777655332232 33334 45669999985321 1111222221 2
Q ss_pred cCccceeEEEeccCChH
Q 003100 562 LPRRRQSLLFSATMPKE 578 (848)
Q Consensus 562 l~~~~Q~ll~SATl~~~ 578 (848)
-.++.-++.||||.+.+
T Consensus 152 ~nkd~~~lef~at~~k~ 168 (812)
T COG3421 152 QNKDNLLLEFSATIPKE 168 (812)
T ss_pred cCCCceeehhhhcCCcc
Confidence 23455678899999843
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.90 E-value=0.0022 Score=70.11 Aligned_cols=125 Identities=22% Similarity=0.277 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
|++-|.+++.. ....++|.|..|||||.+.+--++ +++.... ..+-++|+|++|+.+|..+..++...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999988 677899999999999998444344 3443321 12236999999999999999999987654
Q ss_pred CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 482 ~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
..... .... ...........+.|+|-..+...+-........ -.-.+-++|+..
T Consensus 72 ~~~~~----~~~~----~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQES----SDNE----RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp CCHCC----TT-H----HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred ccccc----cccc----cccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 21000 0000 111111112467899988776544332111111 112456777776
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.88 E-value=0.016 Score=71.46 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.+++-|++|+..++.+ +-++|.++.|+|||.. +-.+..++... +..+++++||--.|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~---------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA---------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC---------CCeEEEEeCcHHHHHHHH
Confidence 4899999999999874 5678999999999984 33333333321 236899999977766543
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.74 E-value=0.0079 Score=56.89 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.2
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
+++.++|.|++|+|||.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 356789999999999995
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.51 E-value=0.0069 Score=68.46 Aligned_cols=60 Identities=30% Similarity=0.360 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHH------hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 401 QMTRVQEATLSAC------LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 401 ~~t~iQ~~aI~~i------l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
+|++-|+.++..+ .++..++|.|+-|+|||.. +-++...++.. +..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRSR---------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhccc---------cceEEEecchHHHHHhc
Confidence 3678899998887 6688999999999999984 44444444321 23689999998777665
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.47 E-value=0.042 Score=69.49 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcC
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~P 463 (848)
++++..+......++ .|++-|.+++..+.. ++-++|.|..|+|||.+ +-++.. ++... |..++.++|
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~-~~e~~---------G~~V~g~Ap 433 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAARE-AWEAA---------GYRVVGGAL 433 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHH-HHHHc---------CCeEEEEcC
Confidence 345555555444443 599999999998865 45678999999999985 333333 33321 236889999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 464 TreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
|-..|..+.+. .++...++ .+++...... ...+..-++||||||
T Consensus 434 TgkAA~~L~e~--------~Gi~a~TI-------------------------as~ll~~~~~---~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 434 AGKAAEGLEKE--------AGIQSRTL-------------------------SSWELRWNQG---RDQLDNKTVFVLDEA 477 (1102)
T ss_pred cHHHHHHHHHh--------hCCCeeeH-------------------------HHHHhhhccC---ccCCCCCcEEEEECc
Confidence 97777655322 12222211 1111000001 123456679999999
Q ss_pred cccccccchhhHHHHHHhcC-ccceeEEEecc
Q 003100 544 DHLLDLGFRKDVENIVDCLP-RRRQSLLFSAT 574 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~~l~-~~~Q~ll~SAT 574 (848)
-++.. ..+..++...+ ...++|++--+
T Consensus 478 sMv~~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 478 GMVAS----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ccCCH----HHHHHHHHHHHhcCCEEEEECCH
Confidence 97643 34555666554 45677776443
No 199
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.42 E-value=0.013 Score=70.89 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcC
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~-dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~P 463 (848)
.+.|.+.+. -+..+..-|++|+-.++.-+ ..+|.|-.|+|||.. +..++..|+..+ -++|+.+=
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~g----------kkVLLtsy 721 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVALG----------KKVLLTSY 721 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHcC----------CeEEEEeh
Confidence 455555553 23457889999998887755 578899999999996 333444444332 26899999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhh----------------hcCCCcEEEeChHHHHHHHHhccC
Q 003100 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL----------------ESDPCQILVATPGRLLDHIENKSG 527 (848)
Q Consensus 464 TreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l----------------~~~~~~IIV~TPgrLl~~L~~~~~ 527 (848)
|...+..+.-.+..+ ++.+.-+-.+..+..+.+.+ .-+.+.||.||--.+.+.|.
T Consensus 722 ThsAVDNILiKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf---- 792 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF---- 792 (1100)
T ss_pred hhHHHHHHHHHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----
Confidence 987777665554443 23222222222222111111 11346788888555444333
Q ss_pred cccccCCccEEEEeccccccc
Q 003100 528 LSVRLMGLKMLVLDEADHLLD 548 (848)
Q Consensus 528 ~~~~l~~l~~lVIDEAH~ll~ 548 (848)
..+.+++.|||||-.++.
T Consensus 793 ---~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 ---VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ---hccccCEEEEcccccccc
Confidence 235689999999998754
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.34 E-value=0.022 Score=55.44 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=38.1
Q ss_pred eecCCcchhhHHHHHHHHhcCC-ceEEEecCCccccccCCC--CCeeEEcCCC
Q 003100 666 EMYSRKPQLYRDRISEEFRASK-RLILVTSDVSARGMDYPD--VTSVVQVGIP 715 (848)
Q Consensus 666 ~lhg~ls~~~R~~i~~~F~~G~-~~VLVaTdvl~rGlDip~--V~~VI~yd~P 715 (848)
.+..+....+...+++.|+... ..||++|..++.|||+|+ +++||..++|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3444444445678888888654 389999988999999998 5689988877
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.33 E-value=0.034 Score=61.07 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=85.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~--dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
.|+......|.-|+..++... =|.+.++.|||||+.++.+.+...+..+... ++||.=|+..+-..+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--------KiiVtRp~vpvG~dI--- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--------KIIVTRPTVPVGEDI--- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--------eEEEecCCcCccccc---
Confidence 577778889999999988753 3568899999999998888888877655432 577777775543221
Q ss_pred HHHHhhcCCCceEEEEeCC-cchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccC-------CccEEEEeccccc
Q 003100 475 AIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM-------GLKMLVLDEADHL 546 (848)
Q Consensus 475 l~~l~~~~~~i~v~~l~gg-~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~-------~l~~lVIDEAH~l 546 (848)
++.||..---...- ..+......+.+ .-=++.+.|-..|....-....+. .=.+||||||+.+
T Consensus 293 -----GfLPG~eEeKm~PWmq~i~DnLE~L~~----~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 293 -----GFLPGTEEEKMGPWMQAIFDNLEVLFS----PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred -----CcCCCchhhhccchHHHHHhHHHHHhc----ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 11111100000000 000001111111 111223333333332210000011 1258999999987
Q ss_pred ccccchhhHHHHHHhcCccceeEEEe
Q 003100 547 LDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 547 l~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
. ..++..|+....+..+++|+.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 4 457888999998888888863
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.27 E-value=0.02 Score=55.80 Aligned_cols=41 Identities=29% Similarity=0.585 Sum_probs=32.8
Q ss_pred hHHHHHHHHhcCCc---eEEEecCC--ccccccCCC--CCeeEEcCCC
Q 003100 675 YRDRISEEFRASKR---LILVTSDV--SARGMDYPD--VTSVVQVGIP 715 (848)
Q Consensus 675 ~R~~i~~~F~~G~~---~VLVaTdv--l~rGlDip~--V~~VI~yd~P 715 (848)
+...+++.|++... .||+++.- ++.|||+|+ +++||..++|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 44677888886543 68888877 999999998 5789988887
No 203
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=96.24 E-value=0.01 Score=49.63 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHhhccCcccHHHH-HHHHHHHcCCCCCCCCC
Q 003100 772 QMDNHMAKIDNNVKEA---AYHAWLGYYNSIREIGRDKTTLVEL-ANKFAQSIGLQRPPPLF 829 (848)
Q Consensus 772 ~~~~~l~~~~~~~~e~---~~~s~l~~y~~~~~~~~~~~~~~~l-~~~la~s~GL~~~P~v~ 829 (848)
.+...+.. +..+.+. ||.+|+.+|..+ .-.+.-+++.++ ..++|+||||..+|.|+
T Consensus 5 ~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~ 64 (65)
T PF13959_consen 5 KLEKLVAK-DRELKELAQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKVR 64 (65)
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCCC
Confidence 33333333 4444444 555555555544 122333445444 56789999999999986
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.12 Score=58.78 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcCcc-ceeEEEeccCCh-HHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRR-RQSLLFSATMPK-EVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~-~Q~ll~SATl~~-~v~~l~~~~ 586 (848)
.++++||||++.+.... .....+..++...... ..++.+|||... .+......+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 56899999999987532 1234455555554433 456889999864 333333333
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=96.15 E-value=0.067 Score=59.56 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh
Q 003100 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l 587 (848)
..+++|+||.|.++. +..+...+..+...+.+..-+++++||...+....+..+.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 356899999999986 4446677777777777777889999998776555555443
No 206
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.13 E-value=0.011 Score=62.81 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=63.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCc-chhHhhhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT-RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 454 ~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~-~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
+.|.+|||+..--=|..+.+.+..+-.. +..|.-++.-. .+.++...+....++|.||||+||..+++++ .+.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l 199 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSL 199 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCc
Confidence 3467999999866666777666665311 22344444433 5666667777778999999999999999877 5678
Q ss_pred CCccEEEEecccc
Q 003100 533 MGLKMLVLDEADH 545 (848)
Q Consensus 533 ~~l~~lVIDEAH~ 545 (848)
.++.+||||--|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999998764
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.12 E-value=0.08 Score=49.94 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999974
No 208
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.00 E-value=0.12 Score=58.83 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=44.0
Q ss_pred cCCCCCcHHHHHHHHHH----hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSAC----LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~i----l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
+.|...+|-|-+-+-.+ -.+.++++.+|+|+|||.+.+--++...+..... ..+.++..-|..-+....
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~-------~~KliYCSRTvpEieK~l 84 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE-------HRKLIYCSRTVPEIEKAL 84 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc-------cceEEEecCcchHHHHHH
Confidence 35677888887665443 3467899999999999998444444443332211 124556555543333333
Q ss_pred HHHHHH
Q 003100 473 AEAIAL 478 (848)
Q Consensus 473 ~~l~~l 478 (848)
.+++.+
T Consensus 85 ~El~~l 90 (755)
T KOG1131|consen 85 EELKRL 90 (755)
T ss_pred HHHHHH
Confidence 444443
No 209
>PRK08181 transposase; Validated
Probab=95.92 E-value=0.086 Score=56.95 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=28.7
Q ss_pred CCccEEEEeccccccccc-chhhHHHHHHhcCccceeEEEeccCChHH
Q 003100 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKEV 579 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~~~~Q~ll~SATl~~~v 579 (848)
.++++|||||.+.+.... -...+..|++.......+|+.|-..+...
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 457899999999865322 23456666665444455666555554443
No 210
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.88 E-value=0.57 Score=63.67 Aligned_cols=211 Identities=13% Similarity=0.105 Sum_probs=109.2
Q ss_pred CCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.+++-|.+++..++.. +-++|.++.|+|||.+ +-.+..+.+.. |..+++++||-..|..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~---------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ---------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHhcch
Confidence 4889999999998875 5678999999999985 33333344331 247899999988777665542111
Q ss_pred hhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
... +......+.. ..-..|...|+ . . ...+..-++||||||-++.. ..+..+
T Consensus 498 --------A~T------i~~~l~~l~~---~~~~~tv~~fl---~-~---~~~l~~~~vlIVDEAsMl~~----~~~~~L 549 (1960)
T TIGR02760 498 --------AST------FITWVKNLFN---DDQDHTVQGLL---D-K---SSPFSNKDIFVVDEANKLSN----NELLKL 549 (1960)
T ss_pred --------hhh------HHHHHHhhcc---cccchhHHHhh---c-c---cCCCCCCCEEEEECCCCCCH----HHHHHH
Confidence 000 0001111111 11122322332 1 1 12345678999999998744 345666
Q ss_pred HHhc-CccceeEEEeccC--C----hHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHH
Q 003100 559 VDCL-PRRRQSLLFSATM--P----KEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEH 631 (848)
Q Consensus 559 l~~l-~~~~Q~ll~SATl--~----~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~ 631 (848)
+... +...++||+--+- + -.+..+..... -+...+..+ ..... .+ .+.......++..+.......
T Consensus 550 l~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~~l~~i--~rq~~--~v--~i~~~~~~~r~~~ia~~y~~L 622 (1960)
T TIGR02760 550 IDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGG-VTTYAWVDT--KQQKA--SV--EISEAVDKLRVDYIASAWLDL 622 (1960)
T ss_pred HHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCC-CcEEEeecc--cccCc--ce--eeeccCchHHHHHHHHHHHhc
Confidence 6654 4578888775442 1 12222222211 111111111 11111 11 111112223333333333222
Q ss_pred hhCCCCceEEEEEecchHHHHHHHHHHH
Q 003100 632 ILGTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 632 ~~~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
.. ....++|+..+..+...|....+.
T Consensus 623 ~~--~r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 623 TP--DRQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred cc--ccCceEEEcCCcHHHHHHHHHHHH
Confidence 11 333689999998888888777654
No 211
>PRK04296 thymidine kinase; Provisional
Probab=95.88 E-value=0.013 Score=59.89 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=30.1
Q ss_pred EeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 512 V~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
+..+..++..+.. .-.++++|||||||.+. ..++..++..+.+.-..+++++-
T Consensus 62 ~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 62 VSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred eCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 3445555555543 12367899999998642 23355666664444445555544
No 212
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.85 E-value=0.025 Score=68.46 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
..+.+.|..|+..++.. ..++|.||+|+|||.+ +..++.++...+ .++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~g----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKRG----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 45799999999998876 5778999999999986 444555554432 2699999999999999888776
No 213
>PRK06526 transposase; Provisional
Probab=95.85 E-value=0.038 Score=59.18 Aligned_cols=46 Identities=13% Similarity=-0.014 Sum_probs=27.7
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcCccceeEEEeccCChH
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~~Q~ll~SATl~~~ 578 (848)
.++++|||||+|.+... .-...+..++........+|+.|...+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 35789999999986422 12334555665433344577777665544
No 214
>PRK06921 hypothetical protein; Provisional
Probab=95.81 E-value=0.11 Score=56.12 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
.+..+++.|++|+|||.. +..+...+..
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 367899999999999974 3344444443
No 215
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.81 E-value=0.028 Score=69.25 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|++-|++++.+ ....++|.|..|||||.+ +..=+.++..... .++-.+|+|+.|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999975 356899999999999998 4555555654321 123369999999999999999998875
Q ss_pred h
Q 003100 480 K 480 (848)
Q Consensus 480 ~ 480 (848)
.
T Consensus 74 ~ 74 (715)
T TIGR01075 74 G 74 (715)
T ss_pred c
Confidence 3
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=95.75 E-value=0.12 Score=61.26 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|.|+|...+..+..++-.++..+=..|||.+...-++..+.... +..+++++|++.-|..+++.+..+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 388999999988766676778888889999976544443333221 23799999999999999988887765
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
..|.+.-..+... ......+ .++..|.+.|-.. . ...=.+..++||||+|.+.+ +...+..+..
T Consensus 130 ~~P~l~~~~i~~~---~~~~I~l-~NGS~I~~lss~~-------~---t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p 193 (534)
T PHA02533 130 LLPDFLQPGIVEW---NKGSIEL-ENGSKIGAYASSP-------D---AVRGNSFAMIYIDECAFIPN--FIDFWLAIQP 193 (534)
T ss_pred hCHHHhhcceeec---CccEEEe-CCCCEEEEEeCCC-------C---ccCCCCCceEEEeccccCCC--HHHHHHHHHH
Confidence 5443211001000 0011111 2445554444210 0 11122467899999998755 2344444444
Q ss_pred hcCc--cceeEEEecc
Q 003100 561 CLPR--RRQSLLFSAT 574 (848)
Q Consensus 561 ~l~~--~~Q~ll~SAT 574 (848)
.+.. ..+++++|.+
T Consensus 194 ~lasg~~~r~iiiSTp 209 (534)
T PHA02533 194 VISSGRSSKIIITSTP 209 (534)
T ss_pred HHHcCCCceEEEEECC
Confidence 4332 2345555554
No 217
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.14 Score=57.82 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHH-HHHHHHH
Q 003100 533 MGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEV-RRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v-~~l~~~~ 586 (848)
.+.++|+||.+-+... ......+..+.........++++|||..... ......+
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 4568899999976532 1122333333222233345788899985543 3344444
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.31 Score=56.23 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=37.9
Q ss_pred eChHHHHHHHHhccCcccccCCccEEEEecccccc-cccchhhHHHHHHh-cCccceeEEEeccCCh-HHHHHHHHH
Q 003100 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENIVDC-LPRRRQSLLFSATMPK-EVRRISQLV 586 (848)
Q Consensus 513 ~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~-l~~~~Q~ll~SATl~~-~v~~l~~~~ 586 (848)
.++..+...+.. +.++++||||-+-+.. +......+..++.. ..+....+++|||... .+..+...+
T Consensus 285 ~~~~~l~~~l~~-------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ-------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH-------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 445555555543 2357999999987643 22233455555552 2233457888998764 444444444
No 219
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.24 Score=55.92 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=40.8
Q ss_pred EeChHHHHHHHHhccCcccccCCccEEEEecccccccc-cchhhHHHHHHhcCccceeEEEeccCC-hHHHHHHHHH
Q 003100 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMP-KEVRRISQLV 586 (848)
Q Consensus 512 V~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~~Q~ll~SATl~-~~v~~l~~~~ 586 (848)
+.+|..+.+.+.... .-.++++|+||-+=+.... .....+..++....+..-++.+|||.. ..+..++..+
T Consensus 302 ~~d~~~L~~aL~~lk----~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 302 VRDEAAMTRALTYFK----EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred cCCHHHHHHHHHHHH----hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 346777766664321 1125789999999775432 123344455554444545677898765 4555555554
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.47 E-value=0.18 Score=53.75 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCccEEEEecccccccccchh-hHHHHHHhcC-ccceeEEEeccCChHH
Q 003100 533 MGLKMLVLDEADHLLDLGFRK-DVENIVDCLP-RRRQSLLFSATMPKEV 579 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~-~l~~Il~~l~-~~~Q~ll~SATl~~~v 579 (848)
.++++|||||++......+.. .+..|++.-- ....+++.|---+.++
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 467899999999876443443 4455666432 3456676665544443
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.45 E-value=0.2 Score=51.53 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=35.9
Q ss_pred CCccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~ 585 (848)
.++++|+||=+-+.. +......+..++..+.+..-.+.+|||...+....+..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 457899999998754 23345667777777777777889999997654443333
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.34 E-value=0.081 Score=49.31 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999995
No 223
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.33 E-value=0.0036 Score=74.68 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc---CCceEEEecCC
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA---SKRLILVTSDV 696 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~---G~~~VLVaTdv 696 (848)
++..|...++... ..+++++||..-.+..+.+..++...+ .+..+.|...-..|+.++.+|.. ....+|++|.+
T Consensus 616 k~~~l~~~~~~l~--~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 616 KLTLLLKMLKKLK--SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 4444445554433 357899999999999999999999888 89999999999999999999983 34678999998
Q ss_pred cccc
Q 003100 697 SARG 700 (848)
Q Consensus 697 l~rG 700 (848)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 7665
No 224
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.22 E-value=0.042 Score=67.10 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|++-|++++.+ ....++|.|..|||||.+ ++.-+.+++.... .++-++|+|+.|+..|.++.+++..++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378999999976 356789999999999998 4455555554311 1223699999999999999999988764
No 225
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.15 E-value=0.081 Score=64.49 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=56.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
..-..|++-|++++-. ...+++|.|..|||||.+ ++.-+.+++..... .+-.+|+|+.|+.+|..+.+++.
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~~------~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQA------QPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCC------CHHHeEEEeccHHHHHHHHHHHH
Confidence 3445799999999864 345789999999999997 44555555543211 12369999999999999999988
Q ss_pred HHhh
Q 003100 477 ALLK 480 (848)
Q Consensus 477 ~l~~ 480 (848)
..++
T Consensus 263 ~~lg 266 (684)
T PRK11054 263 ERLG 266 (684)
T ss_pred HhcC
Confidence 7764
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.89 E-value=0.54 Score=53.03 Aligned_cols=130 Identities=20% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT-RELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT-reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 494 (848)
++.+.+.||||.|||+.-.=-+....+..+.. -.+||.+-| |-=|..+.....+++ ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~--------kVaiITtDtYRIGA~EQLk~Ya~im----~vp~------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK--------KVAIITTDTYRIGAVEQLKTYADIM----GVPL------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc--------ceEEEEeccchhhHHHHHHHHHHHh----CCce-------
Confidence 67888999999999996332222222122211 146777766 444444333333333 2222
Q ss_pred chhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEec
Q 003100 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 495 ~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
.++-+|.-|...+.. +.++++|.||=+-+=. |......+..++..-..-.-.+.+||
T Consensus 264 ---------------~vv~~~~el~~ai~~-------l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa 321 (407)
T COG1419 264 ---------------EVVYSPKELAEAIEA-------LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA 321 (407)
T ss_pred ---------------EEecCHHHHHHHHHH-------hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec
Confidence 344556666555543 3466888888776532 22244555555555544455678899
Q ss_pred cCCh-HHHHHHHHH
Q 003100 574 TMPK-EVRRISQLV 586 (848)
Q Consensus 574 Tl~~-~v~~l~~~~ 586 (848)
|... .+..+...+
T Consensus 322 t~K~~dlkei~~~f 335 (407)
T COG1419 322 TTKYEDLKEIIKQF 335 (407)
T ss_pred CcchHHHHHHHHHh
Confidence 8754 344444443
No 227
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.77 E-value=0.078 Score=57.13 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=57.5
Q ss_pred HHHHHHhcCCceEEEecCCccccccCCC--------CCeeEEcCCCCChhHHHHHhhccCCCCCC-ceEEEEeCc---ch
Q 003100 678 RISEEFRASKRLILVTSDVSARGMDYPD--------VTSVVQVGIPPDREQYIHRLGRTGREGKE-GEGVLLLAP---WE 745 (848)
Q Consensus 678 ~i~~~F~~G~~~VLVaTdvl~rGlDip~--------V~~VI~yd~P~s~~~yiQRiGRaGR~G~~-G~~i~l~~~---~e 745 (848)
...+.|.+|+..|+|.|++++.||.+.. -++-|...+|++....+|..||+.|.|+. .-.|.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998753 34567788999999999999999999963 444544432 46
Q ss_pred hhHHHH
Q 003100 746 EYFLDD 751 (848)
Q Consensus 746 ~~~l~~ 751 (848)
..|...
T Consensus 132 ~Rfas~ 137 (278)
T PF13871_consen 132 RRFAST 137 (278)
T ss_pred HHHHHH
Confidence 655543
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.72 E-value=0.28 Score=47.52 Aligned_cols=45 Identities=16% Similarity=0.397 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccc----------chhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDLG----------FRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g----------f~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
....++||||++.+.+.. ....+..+.........+++++...+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 467899999999875432 234445555555443444555544433
No 229
>PRK08116 hypothetical protein; Validated
Probab=94.70 E-value=0.34 Score=52.35 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=28.9
Q ss_pred CCccEEEEecccc--cccccchhhHHHHHHhc-CccceeEEEeccCChHHH
Q 003100 533 MGLKMLVLDEADH--LLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEVR 580 (848)
Q Consensus 533 ~~l~~lVIDEAH~--ll~~gf~~~l~~Il~~l-~~~~Q~ll~SATl~~~v~ 580 (848)
.+.++||||+++. ..++ ....+..|++.. ....++|+.|...+.++.
T Consensus 177 ~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 177 VNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4568899999954 4444 345566666643 334567776666555543
No 230
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.65 E-value=0.12 Score=63.42 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
|++-|++++.+ ...+++|.|..|||||.+ ++--+.+++.... ..+-.+|+|+.|+..|.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899999875 356899999999999997 5555555554311 1123689999999999999999988765
No 231
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.60 E-value=0.78 Score=54.38 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcc-------ceeeecCCcchhhHHHHHHHHh----
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM-------NVREMYSRKPQLYRDRISEEFR---- 684 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg~ls~~~R~~i~~~F~---- 684 (848)
.....+.-|..++......-| +.++||+||.+-...++....+.|+ +-..+-...+ -..+++.|.
T Consensus 609 ~s~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~ 684 (821)
T KOG1133|consen 609 ESPEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAE 684 (821)
T ss_pred CChHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhh
Confidence 344445556566655544334 7999999999988888888876543 1222222222 355666665
Q ss_pred cCCceEEEec--CCccccccCCC--CCeeEEcCCCCC------------------------hh--------HHHHHhhcc
Q 003100 685 ASKRLILVTS--DVSARGMDYPD--VTSVVQVGIPPD------------------------RE--------QYIHRLGRT 728 (848)
Q Consensus 685 ~G~~~VLVaT--dvl~rGlDip~--V~~VI~yd~P~s------------------------~~--------~yiQRiGRa 728 (848)
.|.-.+|+|. --++.||||.+ .++||.+++|.. .+ ..-|-+|||
T Consensus 685 ~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRA 764 (821)
T KOG1133|consen 685 RGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRA 764 (821)
T ss_pred cCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4555677765 56889999987 788999998731 11 123888999
Q ss_pred CCCCCCceEEEEeC
Q 003100 729 GREGKEGEGVLLLA 742 (848)
Q Consensus 729 GR~G~~G~~i~l~~ 742 (848)
-|.-+.--+|+++.
T Consensus 765 IRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 765 IRHRKDYASIYLLD 778 (821)
T ss_pred HhhhccceeEEEeh
Confidence 98776666666654
No 232
>PRK12377 putative replication protein; Provisional
Probab=94.54 E-value=0.29 Score=52.25 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=25.5
Q ss_pred cCCccEEEEeccccc--ccccchhhHHHHHHhcC-ccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHL--LDLGFRKDVENIVDCLP-RRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~l--l~~gf~~~l~~Il~~l~-~~~Q~ll~SAT 574 (848)
+.++++|||||.+.. ..+ -...+..|++..- ....+++.|--
T Consensus 161 l~~~dLLiIDDlg~~~~s~~-~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKN-EQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHH-HHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 356889999999654 333 3445556666433 34566666543
No 233
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.54 E-value=0.23 Score=58.23 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhC-----C----CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 404 RVQEATLSACLE-----G----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 404 ~iQ~~aI~~il~-----g----~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
|+|+-++-.++. | +.+++.-+=|.|||.....-++-.++-.+ ..+..+++++++++-|..++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 578777776662 2 35788889999999864443343343221 1234799999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh
Q 003100 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (848)
Q Consensus 475 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~ 554 (848)
+..+....+.+....-. .. .....-.|.....+.++..+...... ..=.+..++|+||+|.+.+......
T Consensus 74 ~~~~i~~~~~l~~~~~~---~~------~~~~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h~~~~~~~~~~ 143 (477)
T PF03354_consen 74 AKKMIEASPELRKRKKP---KI------IKSNKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELHAHKDDELYDA 143 (477)
T ss_pred HHHHHHhChhhccchhh---hh------hhhhceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCCCCCCHHHHHH
Confidence 99998765433311100 00 00001123222222222222222111 1122568999999999876433333
Q ss_pred HHHHHHhcCccceeEEEe
Q 003100 555 VENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~S 572 (848)
+..-... .++.+++.+|
T Consensus 144 l~~g~~~-r~~pl~~~IS 160 (477)
T PF03354_consen 144 LESGMGA-RPNPLIIIIS 160 (477)
T ss_pred HHhhhcc-CCCceEEEEe
Confidence 3333333 2345555443
No 234
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.54 E-value=0.075 Score=65.59 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|++-|++++.+. ...++|.|..|||||.+ +..-+.++..... .++-.+|+|+-|+..|.++.+++.+++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999999753 46899999999999997 4445555554321 122369999999999999999999887
Q ss_pred h
Q 003100 480 K 480 (848)
Q Consensus 480 ~ 480 (848)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 5
No 235
>PRK08727 hypothetical protein; Validated
Probab=94.53 E-value=0.2 Score=52.88 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCccEEEEeccccccccc-chhhHHHHHHhcCc-cceeEEEeccCChHH
Q 003100 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEV 579 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~~-~~Q~ll~SATl~~~v 579 (848)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 356789999999886432 22334445554432 334555454445444
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.26 E-value=0.29 Score=54.51 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCccEEEEeccccccccc-chhhHHHHHHhcC-ccceeEEEeccCChHH
Q 003100 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEV 579 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~-~~~Q~ll~SATl~~~v 579 (848)
.++++||||+.+...... ....+..|++... ...++|+.|-..+.++
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 467899999998764332 2445666666543 2455655554444444
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=94.23 E-value=0.17 Score=53.42 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcCc-cceeEEEeccCChH
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~-~~Q~ll~SATl~~~ 578 (848)
.+.++|||||+|.+... .+...+..+++.+.. ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 35689999999997632 234456666665543 34567787776543
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.13 E-value=0.3 Score=50.91 Aligned_cols=42 Identities=10% Similarity=0.255 Sum_probs=24.4
Q ss_pred ccEEEEecccccccc-cchhhHHHHHHhcCccceeEEEeccCC
Q 003100 535 LKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 535 l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
..+|||||+|.+... .....+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 368999999998643 124555566554432222455555543
No 239
>PRK05642 DNA replication initiation factor; Validated
Probab=94.10 E-value=0.2 Score=53.08 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
.++++||||++|.+... .....+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999987532 2455677777766554344666666544
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.05 E-value=0.32 Score=52.88 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=61.5
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCC-CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT-QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~-~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
.+++++|+|+.|||. ++++..+....... ....-+.++|-+|...-....+..+...+.. . +....
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga----P----~~~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA----P----YRPRD 128 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc----c----cCCCC
Confidence 589999999999999 34555443222111 1112245667777766666666655554421 1 00010
Q ss_pred hhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc--hhhHHHHHHhcCcccee
Q 003100 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQS 568 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ 568 (848)
...... .....+|. --++++|||||+|.++.-.. +..+...++.+....++
T Consensus 129 ~~~~~~--------------~~~~~llr--------~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 129 RVAKLE--------------QQVLRLLR--------RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred CHHHHH--------------HHHHHHHH--------HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 000000 00122232 23678999999999886442 23344455555554443
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.97 E-value=0.42 Score=48.03 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=28.5
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
++|.|++|+|||...+ -++....+.+ -.++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~-~~~~~~~~~g----------~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFAL-QFLYAGLARG----------EPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHHCC----------CcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999999532 2222222221 24777754 45556666665544
No 242
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=93.94 E-value=0.0067 Score=68.40 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=90.2
Q ss_pred eeeeeccCCCCccCCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCch
Q 003100 21 RVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS---ETNQHKPMSPD 97 (848)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 97 (848)
-++++.++|+++||+..+..|+|..+...+.|..-.+++....+-+.+++.+|.++.+..-+...- -..+..+..++
T Consensus 121 Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~ 200 (543)
T KOG0342|consen 121 DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD 200 (543)
T ss_pred cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH
Confidence 467799999999999999999999999999999999999999999999999999999976643211 23356677888
Q ss_pred HHHHHHHHhhcccCcccccCCCCCCCc
Q 003100 98 EHVKALADRFMKEGAEDLWNEDDGPVK 124 (848)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (848)
...|.....+.+||....|-+|.++..
T Consensus 201 kl~k~~niliATPGRLlDHlqNt~~f~ 227 (543)
T KOG0342|consen 201 KLVKGCNILIATPGRLLDHLQNTSGFL 227 (543)
T ss_pred HhhccccEEEeCCchHHhHhhcCCcch
Confidence 889999999999999999999998844
No 243
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.84 E-value=0.23 Score=61.53 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|++-|.+++.+ ....++|.|..|||||.+ ++.-+.+++.... ..+-++|+++-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3589999999975 356899999999999997 4444455554321 112369999999999999999998886
Q ss_pred h
Q 003100 480 K 480 (848)
Q Consensus 480 ~ 480 (848)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 5
No 244
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.33 Score=60.36 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=28.2
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+++++||||+|+|.... .+.+.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 568999999999998654 445666777766666556554
No 245
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.69 E-value=0.36 Score=56.28 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred CccEEEEeccccccccc-chhhHHHHHHhcC-ccceeEEEeccCChHHHH
Q 003100 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEVRR 581 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~ 581 (848)
++++|||||+|.+.... ....+..+++.+. ...++++.|.+.|..+..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 56799999999876432 2334555555443 345555555555555443
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.64 E-value=0.56 Score=54.59 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCccEEEEecccccccc-cchhhHHHHHHhcCc-cceeEEEeccCChHHH
Q 003100 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKEVR 580 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~-~~Q~ll~SATl~~~v~ 580 (848)
.++++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..+.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~ 254 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLN 254 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHh
Confidence 46789999999987632 234556666665433 4466665555555443
No 247
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.64 E-value=0.21 Score=62.55 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCC-------CCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEE
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-------STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~-------~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~ 488 (848)
|+++++.-..|.|||.+-+.-.+..+.+.... .........-.|||+|. ++..||..++.+-... .+.|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Q ss_pred EEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE------------------EEEeccccccccc
Q 003100 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM------------------LVLDEADHLLDLG 550 (848)
Q Consensus 489 ~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~------------------lVIDEAH~ll~~g 550 (848)
.+.|=.+........... +|||++|+..|...|... ...-..+.+++ |++|||+.+-..
T Consensus 451 ~Y~Girk~~~~~~~el~~-yDIVlTtYdiLr~El~ht-e~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess- 527 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQ-YDIVLTTYDILRNELYHT-EDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS- 527 (1394)
T ss_pred EEechhhhcccCchhhhc-cCEEEeehHHHHhHhhcc-cccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch-
Q ss_pred chhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 551 FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 551 f~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.....+.+..++ ....-+.|.|+-..+..+.-.+
T Consensus 528 -sS~~a~M~~rL~-~in~W~VTGTPiq~Iddl~~Ll 561 (1394)
T KOG0298|consen 528 -SSAAAEMVRRLH-AINRWCVTGTPIQKIDDLFPLL 561 (1394)
T ss_pred -HHHHHHHHHHhh-hhceeeecCCchhhhhhhHHHH
No 248
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.62 E-value=0.41 Score=62.79 Aligned_cols=65 Identities=26% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.|++-|++++..++.. +-++|.+..|+|||.+. -.++..+..... ..+..++.++||-..|..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 6999999999999965 67889999999999862 122222211000 11236888999987776653
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.44 Score=51.08 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=33.8
Q ss_pred HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~ 474 (848)
+.++.++++.|++|+|||.. +..+...+.+.+ .-++++++.+|+.++...
T Consensus 102 ~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~g-----------~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHL-AIAIGNELLKAG-----------ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred hccCCcEEEECCCCCcHHHH-HHHHHHHHHHcC-----------CeEEEEEHHHHHHHHHHH
Confidence 33788999999999999986 334444454332 234667777887766544
No 250
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.50 E-value=0.16 Score=54.89 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=33.9
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
...+++|||||||.|... -+..+.+++...++....++.+..+..
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhh
Confidence 456799999999998754 356677778877777778887766544
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.40 E-value=0.56 Score=62.37 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
.+++.|++|+..++.+ +-++|.+..|+|||.. +-.++..+..... ..+..++.++||--.|..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~------~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE------SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc------ccCceEEEECCcHHHHHHHH
Confidence 5899999999999985 4678999999999985 3233333221110 11236888999987776543
No 252
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.46 Score=53.72 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=64.6
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
-.++.||.|+||+.. ...+.+.++................+.+++.-.-|.++ . ...+|++.+..-.......
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~--~~~HPDl~~i~~~~~~~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----A--AGAHGGLLTLERSWNEKGK 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----H--ccCCCCeEEEecccccccc
Confidence 578999999999985 44455555543221110000001233444442233222 1 2345555443321111000
Q ss_pred HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 498 ~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.. ...|.|-..-.+.+.+... .......+|||||+|.|... -...+.+++..-+....+|++|..
T Consensus 116 ----~~---~~~I~VdqiR~l~~~~~~~----~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 116 ----RL---RTVITVDEVRELISFFGLT----AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ----cc---cccccHHHHHHHHHHhCcC----cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 00 1234333322233333222 22356789999999998654 344555666655545555554443
No 253
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.39 E-value=0.62 Score=51.68 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...++|||||+|.+... ....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999988643 3445666666655555555543
No 254
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.32 E-value=0.46 Score=56.72 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCccEEEEeccccccccc-chhhHHHHHHhcCc-cceeEEEeccCChHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEVRRI 582 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~~-~~Q~ll~SATl~~~v~~l 582 (848)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhc
Confidence 457899999999986533 24555666665544 467777666566655433
No 255
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.31 E-value=0.39 Score=58.84 Aligned_cols=92 Identities=8% Similarity=0.048 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH-hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~-~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.|.......+...+. .++++||.+|+...+..+++.|++ .+..+..+||+++..+|...+.....|..+|+|+|..+
T Consensus 174 GKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 174 GKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred hHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 344444444444332 356899999999999999999976 47789999999999999999999999999999999744
Q ss_pred cccccCCCCCeeEEcC
Q 003100 698 ARGMDYPDVTSVVQVG 713 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd 713 (848)
. -+.+.++.+||.-.
T Consensus 252 l-~~p~~~l~liVvDE 266 (679)
T PRK05580 252 L-FLPFKNLGLIIVDE 266 (679)
T ss_pred h-cccccCCCEEEEEC
Confidence 3 25677888888444
No 256
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.12 E-value=0.5 Score=54.21 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=26.9
Q ss_pred CccEEEEeccccccccc-chhhHHHHHHhcC-ccceeEEEeccCChHHH
Q 003100 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEVR 580 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~ 580 (848)
++++|||||+|.+.... ....+..+++.+. ...++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46789999999876532 2334455555442 34565554444444443
No 257
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.05 E-value=0.99 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=16.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~ 442 (848)
++|.|+||+|||++ +--++..+.
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 35999999999997 344555554
No 258
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.03 E-value=1.7 Score=47.07 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc-H-HHHHHHHHHHHHHhhcCCCceEEEEeC
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT-R-ELASQIAAEAIALLKNHDGIGVLTLVG 492 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT-r-eLa~Qi~~~l~~l~~~~~~i~v~~l~g 492 (848)
.+..+.+++++|+|||..+.+-+. .+..... ..++|-+.+ | ..+.|+......+ +
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~~~~---------~v~~i~~D~~ri~~~~ql~~~~~~~-----~-------- 130 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHGKKK---------TVGFITTDHSRIGTVQQLQDYVKTI-----G-------- 130 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHHcCC---------eEEEEecCCCCHHHHHHHHHHhhhc-----C--------
Confidence 346788999999999996544332 2222111 123444433 2 3444443322211 1
Q ss_pred CcchhHhhhhhhcCCCcEEE-eChHHHHHHHHhccCcccccCCccEEEEecccccc-cccchhhHHHHHHhcCccceeEE
Q 003100 493 GTRFKVDQRRLESDPCQILV-ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLL 570 (848)
Q Consensus 493 g~~~~~~~~~l~~~~~~IIV-~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll 570 (848)
+.+.. .+|..+.+.+..- ....++++||||-+=+.. +......+..++....+..-++.
T Consensus 131 ---------------~~~~~~~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 131 ---------------FEVIAVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred ---------------ceEEecCCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 12222 3455555554322 112357899999998764 22234445555555555545677
Q ss_pred EeccCC-hHHHHHHHHH
Q 003100 571 FSATMP-KEVRRISQLV 586 (848)
Q Consensus 571 ~SATl~-~~v~~l~~~~ 586 (848)
+|||.. .+....++.+
T Consensus 192 l~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 192 LSASMKSKDMIEIITNF 208 (270)
T ss_pred EcCccCHHHHHHHHHHh
Confidence 999864 4665665554
No 259
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.80 E-value=0.87 Score=50.20 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=26.9
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
..++|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999843334556666777766666666544
No 260
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.76 E-value=0.89 Score=55.35 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+++++||||+|+|....| ..+.+++..-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999976543 34555666555555555544
No 261
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.69 E-value=0.65 Score=49.16 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=24.6
Q ss_pred ccEEEEecccccccc-cchhhHHHHHHhcCc-cceeEEEeccCCh
Q 003100 535 LKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPK 577 (848)
Q Consensus 535 l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~-~~Q~ll~SATl~~ 577 (848)
+++|||||+|.+... .....+..+++.+.. ....+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998632 234455556655432 2223444555443
No 262
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.69 E-value=0.27 Score=64.19 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
++|+-|.++|.. .+++++|.|..|||||.+.+--++..+... . ..-++|+|+=|+..|..+.+++.+.+.
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~-------~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-V-------DIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C-------CHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 368999999973 688999999999999998555555555432 1 111589999999999999998888764
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ 545 (848)
....-. ........+...+ ...-|+|-..++..+-+.....+.+. -.+=|.||...
T Consensus 71 ~~~~~~----p~~~~L~~q~~~~----~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQE----PNSKHLRRQLALL----NTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred HHHhcC----chhHHHHHHHhhc----cCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 321000 0001111111111 34568888887655544422222221 13445777765
No 263
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.66 E-value=0.8 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
..+++|.|++|+|||.+ +--++..+
T Consensus 55 ~~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 35799999999999995 33344444
No 264
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.62 E-value=0.71 Score=52.74 Aligned_cols=146 Identities=13% Similarity=0.194 Sum_probs=80.8
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE-LASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre-La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 496 (848)
-.++.+..|||||.+.++-++..++... ++..+||+-|+.. |..-++..+...+... ++....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~ 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc
Confidence 3678999999999998888877777641 1236899989876 6666777777665543 2321111111100
Q ss_pred hHhhhhhhcCCCcEEEeCh-HHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcC--ccceeEEEec
Q 003100 497 KVDQRRLESDPCQILVATP-GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSA 573 (848)
Q Consensus 497 ~~~~~~l~~~~~~IIV~TP-grLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~--~~~Q~ll~SA 573 (848)
...+...+..|++..- +...+ ......+.++.+|||..+... .+..++..++ .....+++|.
T Consensus 74 ---~i~~~~~g~~i~f~g~~d~~~~--------ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~ 138 (396)
T TIGR01547 74 ---EIKILNTGKKFIFKGLNDKPNK--------LKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSS 138 (396)
T ss_pred ---EEEecCCCeEEEeecccCChhH--------hhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEc
Confidence 0111111334555432 11111 112234689999999998543 4445554443 2222478888
Q ss_pred cCChHHHHHHHHHh
Q 003100 574 TMPKEVRRISQLVL 587 (848)
Q Consensus 574 Tl~~~v~~l~~~~l 587 (848)
|+.....-+.+.+.
T Consensus 139 NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 139 NPESPLHWVKKRFI 152 (396)
T ss_pred CcCCCccHHHHHHH
Confidence 87654333444444
No 265
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.60 E-value=0.73 Score=51.05 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCCCcHHHHHHHHHHhC----CC---CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLE----GK---DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~----g~---dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
+..++|+|..++..+.. ++ -.++.||.|.||+.. ...+.+.++...... .+ -|+...
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~~-----~~-----~c~~c~----- 65 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDP-----AA-----AQRTRQ----- 65 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCCC-----CC-----cchHHH-----
Confidence 45689999998876653 33 478999999999985 333444554322110 00 112111
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc
Q 003100 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (848)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf 551 (848)
.+. .+.+|++.+.....+..-. .....|.|-.--.+.+.+... -.....+++|||+||.|....
T Consensus 66 --~~~--~g~HPD~~~i~~~p~~~~~-------k~~~~I~idqIR~l~~~~~~~----p~~g~~kV~iI~~ae~m~~~A- 129 (319)
T PRK08769 66 --LIA--AGTHPDLQLVSFIPNRTGD-------KLRTEIVIEQVREISQKLALT----PQYGIAQVVIVDPADAINRAA- 129 (319)
T ss_pred --HHh--cCCCCCEEEEecCCCcccc-------cccccccHHHHHHHHHHHhhC----cccCCcEEEEeccHhhhCHHH-
Confidence 111 1345555443211110000 000123332222233333222 223467999999999997653
Q ss_pred hhhHHHHHHhcCccceeEEEecc
Q 003100 552 RKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 552 ~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
...+.+++..-|.+..+|+.|..
T Consensus 130 aNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 130 CNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHHhhCCCCCCeEEEEECC
Confidence 55566677775666666666543
No 266
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.54 E-value=1.4 Score=52.80 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=85.2
Q ss_pred HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-CCceEEEEe
Q 003100 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLV 491 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~-~~i~v~~l~ 491 (848)
....+-.++..|=-.|||.. +.+++..++... .|.++++++|.+..+..+++++...+... +.-.+..+.
T Consensus 251 ~fkqk~tVflVPRR~GKTwi-vv~iI~~ll~s~--------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk 321 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWF-LVPLIALALATF--------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK 321 (738)
T ss_pred HhhccceEEEecccCCchhh-HHHHHHHHHHhC--------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec
Confidence 34567788899999999996 446766555432 24589999999999999999999887632 121122222
Q ss_pred CCcchhHhhhhhhcCC-CcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhc-CccceeE
Q 003100 492 GGTRFKVDQRRLESDP-CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSL 569 (848)
Q Consensus 492 gg~~~~~~~~~l~~~~-~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l-~~~~Q~l 569 (848)
| ..+ ...+..+. ..|.++|- .+. + ..+=..++++|||||+.+.+. .+..++-.+ ..+.++|
T Consensus 322 G-e~I---~i~f~nG~kstI~FaSa-------rnt-N-siRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I 384 (738)
T PHA03368 322 G-ETI---SFSFPDGSRSTIVFASS-------HNT-N-GIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKII 384 (738)
T ss_pred C-cEE---EEEecCCCccEEEEEec-------cCC-C-CccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEE
Confidence 3 221 00111111 25555531 111 0 122346899999999998764 333333322 2478999
Q ss_pred EEeccCCh
Q 003100 570 LFSATMPK 577 (848)
Q Consensus 570 l~SATl~~ 577 (848)
++|.|-+.
T Consensus 385 ~ISS~Ns~ 392 (738)
T PHA03368 385 FVSSTNTG 392 (738)
T ss_pred EEecCCCC
Confidence 99988654
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=92.53 E-value=0.69 Score=49.73 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.5
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..+.++++.||+|+|||..
T Consensus 99 i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH
Confidence 45688999999999999985
No 268
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.46 E-value=0.31 Score=58.24 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH-HHHHH
Q 003100 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-AEAIA 477 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~-~~l~~ 477 (848)
..+|+|.+.+..+-.. +.|+++.++-+|||.+ ++-++-...... +.-+|++.||.++|.... .++..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~---------P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD---------PGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC---------CCCEEEEEEcHHHHHHHHHHHHHH
Confidence 4689999999887654 5788999999999995 333333222222 224899999999999987 56777
Q ss_pred HhhcCCCceEEEEe---CCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 478 LLKNHDGIGVLTLV---GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 478 l~~~~~~i~v~~l~---gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
++...+.+.-.+.- ...........+. + ..|.++.-. +...+.-..+++|++||+|.+.
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-g-g~l~~~ga~---------S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRFP-G-GFLYLVGAN---------SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheecC-C-CEEEEEeCC---------CCcccccCCcCEEEEechhhcc
Confidence 77766544422111 0011111111221 2 234443211 1112334568999999999985
No 269
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.46 E-value=0.56 Score=55.44 Aligned_cols=91 Identities=7% Similarity=0.067 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.|......++...+. .++++||.+|+..-+..+++.|++. +..+..+||+++..+|.++.....+|+..|+|+|..+
T Consensus 9 GKT~v~l~~i~~~l~--~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 9 GKTEVYLQAIEKVLA--LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 344444444444332 3568999999999999999999764 6789999999999999999999999999999999754
Q ss_pred cccccCCCCCeeEEc
Q 003100 698 ARGMDYPDVTSVVQV 712 (848)
Q Consensus 698 ~rGlDip~V~~VI~y 712 (848)
.. +.++++.+||.-
T Consensus 87 lf-~p~~~l~lIIVD 100 (505)
T TIGR00595 87 LF-LPFKNLGLIIVD 100 (505)
T ss_pred Hc-CcccCCCEEEEE
Confidence 32 457788888843
No 270
>PRK04195 replication factor C large subunit; Provisional
Probab=92.42 E-value=0.96 Score=53.21 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=27.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE---GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~---g~dvIv~a~TGSGKTla 432 (848)
+.+|+++-.++..++.|... +..... .+.+++.||+|+|||.+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 34577776666666655432 111112 46799999999999984
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.40 E-value=0.53 Score=49.28 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=32.9
Q ss_pred cCCccEEEEeccccccccc-chhhHHHHHHhcC-ccceeEEEeccCChHHH
Q 003100 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEVR 580 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~ 580 (848)
+..+++||||.+|.+.... ....+..+++.+. ...++|+.|...|..+.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 3467899999999987542 3556666666553 35677777777776654
No 272
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=3.6 Score=48.43 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=31.6
Q ss_pred cCcccCCCCHHHHHHHHHc-CC-CCCcHHHHHHHH------------HHhCCCCEEEEcCCCCcchHHH
Q 003100 379 KRFDECGISPLTIKALTAA-GY-IQMTRVQEATLS------------ACLEGKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~-g~-~~~t~iQ~~aI~------------~il~g~dvIv~a~TGSGKTlaf 433 (848)
..+...|+++.+.+.|... .- .........++. .+..|+.++++|+||+|||...
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHH
Confidence 3456778888887777542 11 111111111111 1224667889999999999864
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.29 E-value=0.84 Score=53.04 Aligned_cols=54 Identities=9% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCccEEEEeccccccccc-chhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.++++|||||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..+...+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL 256 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERL 256 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHH
Confidence 357899999999986532 2445555555432 34566666656666665544343
No 274
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.29 E-value=0.46 Score=58.34 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-ccccccCCCCCeeE
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMDYPDVTSVV 710 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l~rGlDip~V~~VI 710 (848)
.+.+++|.+||..-|...+..+++. ++.+..+||+++..+|..++....+|...|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4668999999999888887776654 688999999999999999999999999999999964 44567889999988
Q ss_pred E
Q 003100 711 Q 711 (848)
Q Consensus 711 ~ 711 (848)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 275
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.25 E-value=0.77 Score=45.56 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=41.7
Q ss_pred cCCccEEEEecccccccccc--hhhHHHHHHhcCccceeEEEeccCChHHHHHHHH
Q 003100 532 LMGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~ 585 (848)
...+++|||||+=..+..++ .+.+..+++..|...-+|+.+-.+|+++...+..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 45789999999998877764 4567777787777778888888888887765543
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=0.65 Score=55.66 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
.+++++||||+|+|....+ +.+.++++.-+.+..+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 4688999999999976544 345555655555666666543
No 277
>PLN03025 replication factor C subunit; Provisional
Probab=92.18 E-value=1.6 Score=48.44 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=24.4
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEE
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
..++|||||+|.|.... ...+..++...+....+++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEE
Confidence 47899999999987543 45556666655555544443
No 278
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.17 E-value=0.25 Score=54.45 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=43.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~-dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
..|..+++-|...+-.+...+ ++++++.||||||+ ++ +.+...-... -++|++--|.||-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lL---Nal~~~i~~~-------eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LL---NALSGFIDSD-------ERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HH---HHHHhcCCCc-------ccEEEEeehhhhc
Confidence 457789999999998777755 99999999999999 33 3332221111 1688888888773
No 279
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.99 E-value=1.4 Score=51.21 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=30.5
Q ss_pred CccEEEEeccccccccc-chhhHHHHHHhcCc-cceeEEEeccCChHHHHHHHH
Q 003100 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g-f~~~l~~Il~~l~~-~~Q~ll~SATl~~~v~~l~~~ 585 (848)
.+++|||||+|.+.+.. ....+..+++.+.. ..++|+.|...|..+..+...
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 46789999999886532 23445555554433 445555555556655554433
No 280
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.79 E-value=0.5 Score=52.38 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 392 KALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 392 ~~L~~~g~~~~t~iQ~~aI~~il-~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
..+...|. +++.|.+.|..+. .+.+++|+|+||||||.. +-.++..+..... .-+++++=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~--------~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP--------EDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC--------CceEEEecCCccc
Confidence 34445554 6677887776544 577999999999999994 3333333322111 1267777777776
No 281
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.76 E-value=0.72 Score=48.27 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=26.3
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccce-eEEEeccCCh
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ-SLLFSATMPK 577 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q-~ll~SATl~~ 577 (848)
..++|||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3567999999987543 23445555554433333 4677777543
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.75 E-value=2.6 Score=48.28 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=30.6
Q ss_pred CccEEEEecccccc-cccchhhHHHHHHhcC---ccceeEEEeccCCh-HHHHHHHHH
Q 003100 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLP---RRRQSLLFSATMPK-EVRRISQLV 586 (848)
Q Consensus 534 ~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~---~~~Q~ll~SATl~~-~v~~l~~~~ 586 (848)
.+++||||=+-+.. +......+..++.... +...++.+|||... .+......+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 56889999766542 2223344445554432 22456888999876 455555444
No 283
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.73 E-value=0.63 Score=48.70 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC----CceEEEE
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD----GIGVLTL 490 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~----~i~v~~l 490 (848)
.|..++|.+++|+|||+..+--+.+.+.+.+. ++++++- .+-..++.+.+..+.-... .-....+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----------~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~ 86 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----------KVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKII 86 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------------EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----------cEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEE
Confidence 35788999999999998533334444444121 4777763 3444555555554311000 0001111
Q ss_pred eCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccc----ccchhhHHHHHHhcCccc
Q 003100 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD----LGFRKDVENIVDCLPRRR 566 (848)
Q Consensus 491 ~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~----~gf~~~l~~Il~~l~~~~ 566 (848)
......... . -..+..+...+... +.-.+.+.+|||-...+.. ..++..+..+...+....
T Consensus 87 d~~~~~~~~---------~--~~~~~~l~~~i~~~----i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~ 151 (226)
T PF06745_consen 87 DAFPERIGW---------S--PNDLEELLSKIREA----IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRG 151 (226)
T ss_dssp ESSGGGST----------T--SCCHHHHHHHHHHH----HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTT
T ss_pred ecccccccc---------c--ccCHHHHHHHHHHH----HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCC
Confidence 111000000 0 12334444444332 1112348899999888732 225556666677666666
Q ss_pred eeEEEeccC
Q 003100 567 QSLLFSATM 575 (848)
Q Consensus 567 Q~ll~SATl 575 (848)
.++++++..
T Consensus 152 ~t~llt~~~ 160 (226)
T PF06745_consen 152 VTTLLTSEM 160 (226)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEcc
Confidence 677777663
No 284
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.58 E-value=2.4 Score=51.68 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=84.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 394 LTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
+.....+....-|.+.+..++.. +-+++.|.=|=|||.+.-|.+. .+.+... ...++|++|+.+-+..+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~--------~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG--------SVRIIVTAPTPANVQTL 277 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC--------CceEEEeCCCHHHHHHH
Confidence 33333333444445556666653 3578999999999998665552 2222211 23699999999998888
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc
Q 003100 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (848)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf 551 (848)
.+.+.+-+... |+.......... ...........|=+.+|.... ..-++||||||=.+ -
T Consensus 278 f~fa~~~l~~l-g~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~-------------~~~DllvVDEAAaI----p 336 (758)
T COG1444 278 FEFAGKGLEFL-GYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ-------------EEADLLVVDEAAAI----P 336 (758)
T ss_pred HHHHHHhHHHh-CCcccccccccc---ceeeecCCceeEEeeCcchhc-------------ccCCEEEEehhhcC----C
Confidence 87766655432 222111111100 000111122345566665432 11478999999876 3
Q ss_pred hhhHHHHHHhcCccceeEEEeccCC
Q 003100 552 RKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 552 ~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
.+.+..++... +.++||.|+.
T Consensus 337 lplL~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 337 LPLLHKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred hHHHHHHHhhc----CceEEEeeec
Confidence 44555555543 4588888874
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.57 E-value=2.3 Score=49.17 Aligned_cols=52 Identities=12% Similarity=0.269 Sum_probs=33.9
Q ss_pred ccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 535 LKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 535 l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.++||||.+-++. +......+..+.....+..-++.++||...+....++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 4889999996543 222344556666666667778888998876555555443
No 286
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=91.57 E-value=3.9 Score=49.28 Aligned_cols=139 Identities=9% Similarity=0.117 Sum_probs=76.6
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC------CCc-e
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH------DGI-G 486 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~------~~i-~ 486 (848)
...+-.++.+|=|.|||.+..+.+. .+... .+.+++|++|...-+.+++..+...+... +.. .
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~-~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILA-AMISF---------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHH-HHHHh---------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 3466788999999999997443333 33321 12479999999999999999888887522 111 1
Q ss_pred EEEEeCCcc-hhHhhhhhhc-CCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcC-
Q 003100 487 VLTLVGGTR-FKVDQRRLES-DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP- 563 (848)
Q Consensus 487 v~~l~gg~~-~~~~~~~l~~-~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~- 563 (848)
+..+.|+.. +......... ++..|.+++-. .+ ..+-..+++||+|||..+.. +.+..|+-.+.
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars---------~~-s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~ 320 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS---------PN-AARGQNPDLVIVDEAAFVNP----GALLSVLPLMAV 320 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc---------CC-CcCCCCCCEEEEECcccCCH----HHHHHHHHHHcc
Confidence 222222221 0000000000 11223332211 11 12223578999999999865 34444544443
Q ss_pred ccceeEEEeccCC
Q 003100 564 RRRQSLLFSATMP 576 (848)
Q Consensus 564 ~~~Q~ll~SATl~ 576 (848)
...+++++|.+..
T Consensus 321 ~~~k~IiISS~~~ 333 (752)
T PHA03333 321 KGTKQIHISSPVD 333 (752)
T ss_pred CCCceEEEeCCCC
Confidence 4566777777753
No 287
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.57 E-value=2.2 Score=49.03 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCcchHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlafl 434 (848)
|.-+.++|+||+|||....
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5567899999999999643
No 288
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.52 E-value=0.51 Score=52.36 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 391 IKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
++.|...|+ +++.|.+.+.. +..+++++++|+||||||.. +-.++..+.... +.-+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 455555565 56778887765 45678999999999999973 333443332111 11267777787776
No 289
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.51 E-value=0.92 Score=46.30 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=39.9
Q ss_pred CCccEEEEecccccccccc--hhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
..+++||+||+=..++.|+ .+.+..++...|...-+|+.--..|+++...+...
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 5689999999999888874 45666677776666667776667788776666543
No 290
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.47 E-value=0.057 Score=54.44 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=51.5
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh
Q 003100 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (848)
Q Consensus 420 Iv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~ 499 (848)
|+.|+=|-|||.+.-+.+...+. . ....++|.+|+.+-+..+++.+..-+... +++. ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-K---------GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-h---------cCceEEEecCCHHHHHHHHHHHHhhcccc-cccc----cccccccc
Confidence 57899999999964443221111 1 11369999999998887776655444321 1111 00000000
Q ss_pred hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 500 ~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
...+......|-+..|..+...- ...++||||||=.+- .+.+.+++.. ...++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~~----------~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAEK----------PQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhCc----------CCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 11111223567777777664321 134789999998763 2344444433 23567777874
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.46 E-value=0.96 Score=61.55 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHH--HHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFL--LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlafl--LPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~ 472 (848)
..+++.|++|+..++.+ +-++|.+..|+|||.... +-.+..+++. .+..++.++||-..|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------cCCeEEEEeChHHHHHHHH
Confidence 36899999999999875 456789999999998531 1222222221 1236888999977776653
No 292
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.35 E-value=2 Score=52.80 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCcchHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLL 435 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflL 435 (848)
++-+.+++|||+|||++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34567999999999996433
No 293
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.34 E-value=1.2 Score=54.36 Aligned_cols=93 Identities=13% Similarity=-0.027 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-c-cceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-K-MNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~-~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
..|.+.+..++...+. .++.+||.+|.+..+..+...|+.. + ..+..+|++++..+|.+.+....+|+.+|+|.|.
T Consensus 171 SGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 171 EDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 4677777777777664 4678999999999999999999865 3 5699999999999999999999999999999998
Q ss_pred CccccccCCCCCeeEEcC
Q 003100 696 VSARGMDYPDVTSVVQVG 713 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd 713 (848)
.+. =.-+++..+||..+
T Consensus 249 SAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eeE-EeccCCCCEEEEEc
Confidence 644 35667778877544
No 294
>PF13173 AAA_14: AAA domain
Probab=91.32 E-value=1.3 Score=41.94 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=25.1
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.-.+|+|||+|.+.+ +...+..+.+.- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 346799999999865 456666666644 44565554433
No 295
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.29 E-value=0.66 Score=51.70 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHhCCC----CEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEGK----DAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~----dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.++|+|...+..+.... -.++.||.|.|||..+ ..+...++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHc
Confidence 35789999998877542 4789999999999853 33334444
No 296
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.17 E-value=2.4 Score=47.87 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
++.+++++|||+|||...
T Consensus 206 ~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999853
No 297
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.16 E-value=0.86 Score=53.86 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+++++||||||+|....| ..+.+++...|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999876543 44556666666666555544
No 298
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.02 E-value=1 Score=48.39 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
..++++.||+|+|||...
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 357899999999999853
No 299
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.02 E-value=1.4 Score=51.51 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=26.4
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
....+++||||+|.|....| +.+.+.+..-++...+|+ .+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCCh
Confidence 35789999999999876433 344555555444444444 33533
No 300
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.95 E-value=2.6 Score=41.93 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=31.1
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
...+++||||||.|... -...+.+++..-+....+++.|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 56899999999998765 466777778877767766666655433
No 301
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.73 E-value=0.16 Score=65.84 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=76.9
Q ss_pred eEEEEEecchHHHHHHHHHHHhc-cceeeecCCcch-----------hhHHHHHHHHhcCCceEEEecCCccccccCCCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLREMK-MNVREMYSRKPQ-----------LYRDRISEEFRASKRLILVTSDVSARGMDYPDV 706 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~~-~~v~~lhg~ls~-----------~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V 706 (848)
-.|+||+....+..+.+.++... ..+..+.|.+.+ ..+..++..|......+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899999888888888887653 233334444322 226778999999999999999999999999999
Q ss_pred CeeEEcCCCCChhHHHHHhhccCCCC
Q 003100 707 TSVVQVGIPPDREQYIHRLGRTGREG 732 (848)
Q Consensus 707 ~~VI~yd~P~s~~~yiQRiGRaGR~G 732 (848)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997754
No 302
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.72 E-value=0.83 Score=49.13 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.9
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|.-+++.|++|+|||..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF 46 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH
Confidence 44577889999999999984
No 303
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.64 E-value=2.1 Score=45.81 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHh----CCC-CEEEEcCCCCcchHH
Q 003100 402 MTRVQEATLSACL----EGK-DAVVKAKTGTGKSIA 432 (848)
Q Consensus 402 ~t~iQ~~aI~~il----~g~-dvIv~a~TGSGKTla 432 (848)
+++.+.+++..+. .+. .+++.|++|+|||..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4555666665442 233 578999999999985
No 304
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.62 E-value=1.1 Score=54.18 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=26.2
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
+.+.++|||||+|.|.... ...+.+++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876533 334555666555566555554
No 305
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.57 E-value=1.2 Score=45.47 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=56.2
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCce-EEEEeCCcch
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG-VLTLVGGTRF 496 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~-v~~l~gg~~~ 496 (848)
=-++++|+.||||.. +|+.+.+.... +.++++..|-. .... +.. +..-. |...
T Consensus 6 l~~i~gpM~SGKT~e----Ll~r~~~~~~~-------g~~v~vfkp~i----------D~R~----~~~~V~Sr~-G~~~ 59 (201)
T COG1435 6 LEFIYGPMFSGKTEE----LLRRARRYKEA-------GMKVLVFKPAI----------DTRY----GVGKVSSRI-GLSS 59 (201)
T ss_pred EEEEEccCcCcchHH----HHHHHHHHHHc-------CCeEEEEeccc----------cccc----ccceeeecc-CCcc
Confidence 357899999999996 33333333221 23688888841 1111 111 11111 2111
Q ss_pred hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 497 ~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
..++|-.+..+.+++..... ...+++|.||||+-+... .-.++..+.+
T Consensus 60 -----------~A~~i~~~~~i~~~i~~~~~----~~~~~~v~IDEaQF~~~~-~v~~l~~lad 107 (201)
T COG1435 60 -----------EAVVIPSDTDIFDEIAALHE----KPPVDCVLIDEAQFFDEE-LVYVLNELAD 107 (201)
T ss_pred -----------cceecCChHHHHHHHHhccc----CCCcCEEEEehhHhCCHH-HHHHHHHHHh
Confidence 35677788888888876521 123789999999975432 2333444444
No 306
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.46 E-value=1.8 Score=48.63 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...++|||||||.|.... ...+.+++..-+....+|++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999997543 445666676655555555554
No 307
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.36 E-value=0.97 Score=49.70 Aligned_cols=67 Identities=31% Similarity=0.413 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 391 IKALTAAGYIQMTRVQEATLSAC-LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~i-l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
++.|.+.|. +++.|.+.+..+ ..+++++|+|+||||||.. +-.++..+.... +.-+++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~--------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND--------PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC--------CCceEEEECCchhhc
Confidence 445555554 556666666544 4577999999999999994 333333332211 112678888887773
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.34 E-value=1.6 Score=52.59 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=26.4
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....++|||||+|.|.... ...+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4568999999999987543 334455555555555555544
No 309
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.32 E-value=1 Score=42.06 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.4
Q ss_pred ccEEEEeccccccccc
Q 003100 535 LKMLVLDEADHLLDLG 550 (848)
Q Consensus 535 l~~lVIDEAH~ll~~g 550 (848)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987654
No 310
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=3.2 Score=46.96 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=19.3
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
.++++.|+||+|||.+ .--++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 4699999999999996 33345555443
No 311
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.28 E-value=1.8 Score=48.04 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=27.1
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+++|||+||.|... -...+.+++..=|.+.-+|+.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 356899999999999765 3556666676644455444444
No 312
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.26 E-value=4.2 Score=49.27 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEE
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
..++++||||||+|.... ...+.+++..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987654 33455556654444444443
No 313
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.25 E-value=0.91 Score=52.80 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred CCccEEEEecccccccccchhhHHHHHHh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDC 561 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~ 561 (848)
..++++||||||+|.... ...+.+++..
T Consensus 120 g~~KV~IIDEah~Ls~~A-~NALLKtLEE 147 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS-FNALLKTLEE 147 (484)
T ss_pred CCCEEEEEechhhcCHHH-HHHHHHHhhc
Confidence 357899999999986543 3334444443
No 314
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.18 E-value=0.65 Score=57.31 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhc-----cceee-ecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMK-----MNVRE-MYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~-----~~v~~-lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.++++++.+||..-+.+.++.|.... ..+.. +|+.|+..+++.++++|.+|+.+|||+|+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 46899999999999988888887763 33333 9999999999999999999999999999764
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.04 E-value=4.8 Score=43.63 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCccEEEEecccccc-cccchhhHHHHHHhcC------ccceeEEEeccCChHHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLP------RRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~------~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.++++||||=+-++. +......+..+..... +..-++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 457888888887754 2223445555555544 45567888998765544444443
No 316
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.79 E-value=1.2 Score=53.55 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.+++++||||+|+|....+ ..+.+++...+....+|+ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EEC
Confidence 4678999999998876543 445566666555554444 344
No 317
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=89.78 E-value=1.3 Score=51.08 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCcchHHH
Q 003100 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 403 t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaf 433 (848)
-......+..+..++++++.+++|+|||...
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3344556667778999999999999999853
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.72 E-value=2.4 Score=50.90 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
...+++||||+|+|.... ...+.+++...+...-+|+.+ |-+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 568999999999997653 334555666555555555544 443
No 319
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.60 E-value=0.97 Score=55.02 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=64.9
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc-cccccCCCCCeeE
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-ARGMDYPDVTSVV 710 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl-~rGlDip~V~~VI 710 (848)
.+.+++|.+||..-|...++.+.+. ++.+..+||+++..+|..++....+|+..|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3568999999999988888777654 6899999999999999999999999999999999754 3467888899888
Q ss_pred E
Q 003100 711 Q 711 (848)
Q Consensus 711 ~ 711 (848)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 3
No 320
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.59 E-value=2.1 Score=50.39 Aligned_cols=90 Identities=21% Similarity=0.178 Sum_probs=53.0
Q ss_pred CCCCHH-HHHHHHHcCCCCCcH-------HHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCC
Q 003100 384 CGISPL-TIKALTAAGYIQMTR-------VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (848)
Q Consensus 384 l~l~~~-l~~~L~~~g~~~~t~-------iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~ 455 (848)
.++..+ +...|.+.--.+|+. -|-++|.. -.++-+||+|..|||||.++ |.=+..|+-.- .... ..+
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiA-LHRvAyLlY~~-R~~l--~~k 261 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIA-LHRVAYLLYGY-RGPL--QAK 261 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHH-HHHHHHHHhcc-cccc--ccC
Confidence 344444 455566554444443 33334432 23667899999999999984 33333333221 1111 111
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 456 IYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
.+||+.|.+.++.-+.+.+-.+.
T Consensus 262 -~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 262 -PVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred -ceEEEcCcHHHHHHHHHhchhhc
Confidence 39999999999888877766653
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.52 E-value=4.6 Score=46.57 Aligned_cols=53 Identities=2% Similarity=0.186 Sum_probs=31.0
Q ss_pred CccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 534 GLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.+++||||=+-++.. ......+..+.....+..-++.++||........+..+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 456777777765432 12334455555555556667778888765555555444
No 322
>PRK05973 replicative DNA helicase; Provisional
Probab=89.42 E-value=2.7 Score=44.57 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHcCCCC----------CcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCC
Q 003100 384 CGISPLTIKALTAAGYIQ----------MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (848)
Q Consensus 384 l~l~~~l~~~L~~~g~~~----------~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~ 453 (848)
++++..+=+...+.||.. +||.. ++..-+..|.-++|.|++|+|||+. .+-++....+.+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~~G-------- 92 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMKSG-------- 92 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC--------
Confidence 344555545555667663 44422 2334445577889999999999985 333332222221
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 454 PPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 454 ~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
-+++|++-- +-..|+.+++..+
T Consensus 93 --e~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 93 --RTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred --CeEEEEEEe-CCHHHHHHHHHHc
Confidence 146666432 2345666665554
No 323
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.08 E-value=1.6 Score=43.96 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=40.4
Q ss_pred CCccEEEEecccccccccc--hhhHHHHHHhcCccceeEEEeccCChHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~ 585 (848)
..+++||+||+-..++.|+ .+.+..++...|...-+|+..-..|+.+...+..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5689999999998887774 3466677777777777888777788887666544
No 324
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.01 E-value=1.2 Score=54.43 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-ccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
+-..|.+...+++...+. .++.+||.+|.+..+..+...|+.. +.++..+|+++++.+|.....+..+|+.+|+|.|
T Consensus 226 TGSGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 445667777777777664 4679999999999888888888654 7899999999999999999999999999999999
Q ss_pred CCccccccCCCCCeeE
Q 003100 695 DVSARGMDYPDVTSVV 710 (848)
Q Consensus 695 dvl~rGlDip~V~~VI 710 (848)
..+- =.-+++..+||
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 7543 34566666666
No 325
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.00 E-value=4.6 Score=48.81 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
.+++++||||+|+|....|. .+.+.+..-+....+|+.+ |-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T-td~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT-TDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE-CCc
Confidence 46899999999998765433 3444444444444454443 443
No 326
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.88 E-value=1.2 Score=50.25 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEE
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
...+++||||+|.+....+ ..+.+.+...+....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999999875433 2344455554445555554
No 327
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.81 E-value=1.6 Score=55.13 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=64.7
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-CccccccCCCCCeeEE
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSARGMDYPDVTSVVQ 711 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-vl~rGlDip~V~~VI~ 711 (848)
+.+++|.+||..-|...+..|+.. ++.+..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999998887764 56788999999999999999999999999999996 3446688899999884
No 328
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.79 E-value=0.5 Score=55.88 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 401 ~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+|+.+|.+.+..+. .|+-.|+.+|||+|||+..+-.++..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 48999998886654 5898999999999999987666666554
No 329
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.68 E-value=3.1 Score=45.86 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=27.8
Q ss_pred cCCccEEEEeccccc--ccccchhhHHHHHHhc-CccceeEEEeccCChHHH
Q 003100 532 LMGLKMLVLDEADHL--LDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEVR 580 (848)
Q Consensus 532 l~~l~~lVIDEAH~l--l~~gf~~~l~~Il~~l-~~~~Q~ll~SATl~~~v~ 580 (848)
+.++++|||||.... .+|.....+..|++.. .....+++.|--...++.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 346789999999754 3443223344555543 345566666655444443
No 330
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.68 E-value=5.5 Score=43.66 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=25.2
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
..++|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4678999999998653 2345666666656666555544
No 331
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=1.8 Score=53.83 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
.+++++||||||+|.... ...+.+++..-+....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCch
Confidence 467899999999986442 34455566655555555554 44333
No 332
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.43 E-value=1.8 Score=49.70 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHH
Q 003100 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (848)
Q Consensus 390 l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~ 469 (848)
+++.+++ .+..+-..|.++.-..-.|.- .|.+-.|||||...++- +.++....+ .-+++|.+-|+.|+.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~knP--------d~~I~~Tfftk~L~s 220 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHSKNP--------DSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhcCCC--------CceEEEEeehHHHHH
Confidence 4444443 233455667776544444555 67889999999963332 333433222 237999999999999
Q ss_pred HHHHHHHHHh
Q 003100 470 QIAAEAIALL 479 (848)
Q Consensus 470 Qi~~~l~~l~ 479 (848)
++...+.+++
T Consensus 221 ~~r~lv~~F~ 230 (660)
T COG3972 221 TMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHH
Confidence 9999888887
No 333
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.37 E-value=2 Score=50.65 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCcchHHHH
Q 003100 417 KDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlafl 434 (848)
+.++++||.|+|||.++.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999999643
No 334
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.36 E-value=3.4 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
..++|.||+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999985 333444443
No 335
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=88.25 E-value=2 Score=47.59 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=27.1
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
....+++|||+||.|... -...+.+++..=|++.-+|+.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 356899999999999754 35556666666444444444443
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.23 E-value=5.8 Score=44.85 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred CccEEEEecccccccccchhhHHHHHHhc-CccceeEEEeccCChHH
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEV 579 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l-~~~~Q~ll~SATl~~~v 579 (848)
...+|+|||.|-- |.+-.-.+..++..+ ....-+|..|-+.|.++
T Consensus 127 ~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 4578999999953 332223334444433 34566777777777654
No 337
>CHL00181 cbbX CbbX; Provisional
Probab=88.13 E-value=6.3 Score=43.06 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
+.++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 557899999999999964
No 338
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.97 E-value=0.99 Score=45.66 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 411 SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 411 ~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
..+-+++++++.|++|+|||.. +..+...+...+ ..+++ +++.+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~~g----------~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHL-AVAIANEAIRKG----------YSVLF-ITASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHH-HHHHHHHHHHTT------------EEE-EEHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHH-HHHHHHHhccCC----------cceeE-eecCceeccc
Confidence 3445688999999999999986 444555555432 13544 4555665543
No 339
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.80 E-value=2.9 Score=44.16 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|..++|.|++|+|||+..+--+.+.+ +.+ -+++|++ +-+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~g----------e~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMG----------EPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcC----------CcEEEEE-eeCCHHHHHHHHHHh
Confidence 367889999999999985332233333 211 1477776 445566666666554
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.48 E-value=2.7 Score=51.83 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=26.1
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHH
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRI 582 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l 582 (848)
...+|||||+|++.... .. .++..+. ..++++.+||-.+....+
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Qd---aLL~~lE-~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QD---ALLPWVE-NGTITLIGATTENPYFEV 152 (725)
T ss_pred CceEEEEeChhhCCHHH-HH---HHHHHhc-CceEEEEEecCCChHhhh
Confidence 35689999999975432 22 2333332 356778888765544333
No 341
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.48 E-value=2.2 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=16.3
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~ 442 (848)
++++||.|+|||.+.. .+...+.
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHh
Confidence 4999999999999633 3333443
No 342
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.47 E-value=4 Score=46.80 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=23.5
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
....++|||||+|.|.... ...+.+.+...++.. +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4567899999999987542 223344444333333 3444444
No 343
>PF05729 NACHT: NACHT domain
Probab=87.43 E-value=5 Score=38.91 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=18.2
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
-++|.|+.|+|||.. +--++..+...
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhc
Confidence 478999999999995 33444444443
No 344
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.43 E-value=4 Score=47.74 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCcchHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlafl 434 (848)
|+-+.++||||+|||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4567799999999999643
No 345
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.30 E-value=2.3 Score=51.13 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=24.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
...++|||||||.|.... ...+.+++..-+ ..-++++.+|-+.
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~-~~~ifILaTt~~~ 160 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPP-ARVTFVLATTEPH 160 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccC-CCEEEEEecCChh
Confidence 457899999999986432 233334444322 2334445555444
No 346
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.22 E-value=5 Score=42.33 Aligned_cols=19 Identities=32% Similarity=0.428 Sum_probs=16.3
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..|.-+++.+++|+|||+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4577889999999999995
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.16 E-value=10 Score=37.70 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=28.9
Q ss_pred CccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 534 ~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
..+++|+|...... +......+..+........-++.++|+........+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 56789999988753 222333444444433345556667776555444444443
No 348
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.15 E-value=1.9 Score=52.68 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=25.4
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
....+++||||||.|.... ...+.+.+..-|....+| +.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifI-LaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFI-LATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEE-EEcCChh
Confidence 3577899999999986532 334444455444444334 3444333
No 349
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.13 E-value=1.4 Score=45.93 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.+.++||+||||.|.+- -...+...+....+..+..+...+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 45688999999998763 455566666655555555444333
No 350
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.07 E-value=1 Score=48.78 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=32.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhC
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~ 445 (848)
..+|+++++++-+.+.+.. ...=++|.+|||||||.. +..++.++.+..
T Consensus 105 i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 105 IPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred CCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 4557777777766553321 122367999999999997 666777776543
No 351
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.96 E-value=8 Score=46.38 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=24.7
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
....+++||||+|+|....+. .+.+.+...+... ++++.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeCCh
Confidence 356889999999998654333 3344444433333 333344543
No 352
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.89 E-value=0.92 Score=52.47 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 402 MTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~--dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+++.|.+.+..+++.. =++|.||||||||.. +..+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 4678888887777644 356899999999996 555555554
No 353
>PTZ00293 thymidine kinase; Provisional
Probab=86.88 E-value=2.1 Score=44.52 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
|.=.++.||++||||.- +|-.+......+ .+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag----------~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSE----------KKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcC----------CceEEEEec
Confidence 44467899999999985 444443333221 257888885
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.87 E-value=4.5 Score=45.28 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=26.6
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
....+++|||+||+|.... ...+.+++..-|+..-+|+.|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEEC
Confidence 3568999999999997653 4556666665444444444443
No 355
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.82 E-value=2 Score=47.21 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=25.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...++|||||||.|... -...+..++..-+....+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57899999999998763 3445555555544444444443
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=86.77 E-value=8.8 Score=44.43 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.5
Q ss_pred CEEEEcCCCCcchHHH
Q 003100 418 DAVVKAKTGTGKSIAF 433 (848)
Q Consensus 418 dvIv~a~TGSGKTlaf 433 (848)
-+++++++|+|||+..
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999863
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.74 E-value=5.4 Score=47.52 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...+++||||||+|.... ...+.+.+...+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999987643 345556666655555555544
No 358
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.73 E-value=3.5 Score=49.02 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=26.1
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+.+++||||+|+|....+ ..+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4678999999999876433 34555566655556556554
No 359
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.67 E-value=5.7 Score=40.35 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=38.7
Q ss_pred CCccEEEEecccccccccch--hhHHHHHHhcCccceeEEEeccCChHHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~--~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
..+++||+||.-..+..|+. +.+..++..-|....+|+.--..|+.+...+...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 36899999999998877743 4566666666666666666656788877776654
No 360
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.67 E-value=3.8 Score=46.48 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.-+++.+++|+|||.. ++-+...+... +.+++|+.-. +-..|+..+..++
T Consensus 81 ~GslvLI~G~pG~GKStL-llq~a~~~a~~----------g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL-LLQVAARLAKR----------GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhc----------CCeEEEEECC-cCHHHHHHHHHHc
Confidence 356788999999999995 33333333221 1257787653 3445665555443
No 361
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.64 E-value=5.5 Score=40.28 Aligned_cols=41 Identities=7% Similarity=0.254 Sum_probs=24.5
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.....+|||||+|.+... ....+...+...++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 356789999999998653 2344555555533333 3444443
No 362
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.58 E-value=2.9 Score=50.45 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=23.8
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
....++|||||+|.|.... ...+.+.+...+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 3567899999999986543 233444444433333 3444444
No 363
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.39 E-value=2.2 Score=49.91 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.7
Q ss_pred CEEEEcCCCCcchHHH
Q 003100 418 DAVVKAKTGTGKSIAF 433 (848)
Q Consensus 418 dvIv~a~TGSGKTlaf 433 (848)
.+|++||.|+|||...
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999853
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.30 E-value=13 Score=44.76 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=27.1
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
...++++||||+|+|.... ...+.+++..-+....+|+. +|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~-t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFA-TTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEE-eCChh
Confidence 3568999999999987543 34455556654444444443 35333
No 365
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.29 E-value=2.2 Score=50.27 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999984
No 366
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=86.22 E-value=0.96 Score=52.84 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=30.0
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHH
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRR 581 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~ 581 (848)
..+-++.|+|||-.-++.+....+-.++.... +-++|-.-.+.+..
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWK 631 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHh
Confidence 45678999999999877666666666655442 44555555555443
No 367
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.11 E-value=0.53 Score=56.26 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhC----------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 401 QMTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~----------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
.+...|.+++-.+.+ .-..+|-...|.||--...--|++..++... ++|.+.-+..|-..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK----------rAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK----------RALWFSVSSDLKFD 333 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc----------eeEEEEeccccccc
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHH-hccCcccccCCc---------cEEEE
Q 003100 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGL---------KMLVL 540 (848)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~-~~~~~~~~l~~l---------~~lVI 540 (848)
..+.+..+... +|.|..+.--.-.+.....-....-.|++||+-.|+-.-+ ....+...++.+ .+||+
T Consensus 334 AERDL~DigA~--~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 334 AERDLRDIGAT--GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhhchhhcCCC--CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Q ss_pred eccccccccc---------chhhHHHHHHhcCccceeEEEecc
Q 003100 541 DEADHLLDLG---------FRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 541 DEAH~ll~~g---------f~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
||||+-.+.- -+..+..+-+.|| +.+++.-|||
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
No 368
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=86.09 E-value=2.1 Score=50.73 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhh-CCCCce-EEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEE
Q 003100 620 HFQILHHLLKEHIL-GTPDYK-VIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILV 692 (848)
Q Consensus 620 k~~~L~~lL~~~~~-~~~~~k-iLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLV 692 (848)
-..++.-+|..... ...... +||++||++-|..+++.+... ++.++.++|+++...+... ++.| .+|||
T Consensus 80 T~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivV 155 (513)
T COG0513 80 TAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVV 155 (513)
T ss_pred HHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEE
Confidence 34555555555321 222223 999999999999999888765 4568999999887666644 4446 99999
Q ss_pred ecC-----Ccccc-ccCCCCCeeE
Q 003100 693 TSD-----VSARG-MDYPDVTSVV 710 (848)
Q Consensus 693 aTd-----vl~rG-lDip~V~~VI 710 (848)
+|+ .+.++ +++..|.++|
T Consensus 156 aTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 156 ATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred ECccHHHHHHHcCCcchhhcCEEE
Confidence 996 45566 8899999988
No 369
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.03 E-value=3 Score=48.60 Aligned_cols=52 Identities=33% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.-+++.+++|+|||+. ++-+...+.+. +.+++|+.- .+-..|+...+.++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~----------g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAAA----------GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHhc----------CCeEEEEEc-cccHHHHHHHHHHc
Confidence 356788999999999995 33333333221 125788764 45556776665544
No 370
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.94 E-value=2.7 Score=47.34 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCcchHHH
Q 003100 417 KDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaf 433 (848)
.++|+.+|.|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 37899999999999854
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.93 E-value=14 Score=41.08 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCccEEEEeccccccc-ccchhhHHHHHHhc------CccceeEEEeccCChHHHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLD-LGFRKDVENIVDCL------PRRRQSLLFSATMPKEVRRISQLV 586 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l------~~~~Q~ll~SATl~~~v~~l~~~~ 586 (848)
.++++||||=+-++.. ......+..+...+ .+..-++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4678899998887642 22234444544322 233457888999765433333333
No 372
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.92 E-value=1.7 Score=49.30 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.4
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
+..++|++|||||||.. +-.+++++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 45688999999999994 3445555543
No 373
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.88 E-value=2.2 Score=43.95 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=30.1
Q ss_pred eChHHHHHHHHhccCcccccCCccEEEEecccccc-c----ccchhhHHHHHHhcCc-cceeEEEeccC
Q 003100 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-D----LGFRKDVENIVDCLPR-RRQSLLFSATM 575 (848)
Q Consensus 513 ~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll-~----~gf~~~l~~Il~~l~~-~~Q~ll~SATl 575 (848)
.+-..++..+.... .+ -+|||||+|.+. . ..+...+..++..... ....++++++.
T Consensus 104 ~~l~~~~~~l~~~~------~~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKG------KK-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCH------CC-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcC------Cc-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 33445555555431 11 579999999998 2 2355556666655322 23345566664
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=85.87 E-value=2.1 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
|.-+++.+++|+|||..
T Consensus 25 g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 25 PSLILIEGDHGTGKSVL 41 (234)
T ss_pred CcEEEEECCCCCChHHH
Confidence 56788999999999985
No 375
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.84 E-value=2.2 Score=50.16 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=34.4
Q ss_pred CcccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 374 PILSQKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 374 ~~~~~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
...+..+|++.|--.++...|.-. -+.. |-+-+++-. -.-..|++++|.|+||||.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~--pd~~k~lGi-~~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKR--PDLFKALGI-DAPSGVLLCGPPGCGKTLL 561 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccC--HHHHHHhCC-CCCCceEEeCCCCccHHHH
Confidence 334456799998777776666531 2222 222223321 1245799999999999994
No 376
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.79 E-value=3.3 Score=47.21 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=35.4
Q ss_pred CccEEEEecccccccc-cchhhHHHHHHhcCc-cceeEEEeccCChHHHHHH
Q 003100 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKEVRRIS 583 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~-~~Q~ll~SATl~~~v~~l~ 583 (848)
++++++||.++.+... .....+..+++.+.. ..|+|+.|...|.++..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 6789999999998754 245556666666553 4488888888887766443
No 377
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.77 E-value=6.6 Score=46.65 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=83.8
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc-CCCceEEEEeC
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN-HDGIGVLTLVG 492 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~-~~~i~v~~l~g 492 (848)
...+-.+..-|=-.|||. |++|++..++.. ..++++.|++.-|..++-+..++...+.. ++.-.+...-+
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s--------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~ 270 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN--------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD 270 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh--------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC
Confidence 455677778899999998 699999988874 23578999999999998888877655532 22211211111
Q ss_pred CcchhHhhhhhhcCCCcEEEeChHHHHH-H-HHhccCcccccCCccEEEEecccccccccchhhHHHHHHhc-CccceeE
Q 003100 493 GTRFKVDQRRLESDPCQILVATPGRLLD-H-IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSL 569 (848)
Q Consensus 493 g~~~~~~~~~l~~~~~~IIV~TPgrLl~-~-L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l-~~~~Q~l 569 (848)
-.|.+.-||.=-. + +.....-..+=.++.++++||||-+. .+.+..|+-.+ .+++++|
T Consensus 271 ---------------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiI 331 (668)
T PHA03372 271 ---------------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKII 331 (668)
T ss_pred ---------------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEE
Confidence 1333333332100 0 00000012344568899999999863 34556666654 3678889
Q ss_pred EEeccCC
Q 003100 570 LFSATMP 576 (848)
Q Consensus 570 l~SATl~ 576 (848)
+.|.|-+
T Consensus 332 fISS~Ns 338 (668)
T PHA03372 332 FISSTNT 338 (668)
T ss_pred EEeCCCC
Confidence 9998853
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.74 E-value=2 Score=46.26 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=27.6
Q ss_pred HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
+..+.+++++|+||||||.. +-.++..+-.. ..+++++-.+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE----------DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----------TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc----------ccceEEeccccce
Confidence 34578999999999999995 33333333221 1256777766665
No 379
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.74 E-value=1.6 Score=44.08 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCcc-ceeEEEec
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSA 573 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~-~Q~ll~SA 573 (848)
.+.+++++||...-++......+..++..+... .++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456889999999999887777777776655433 56666543
No 380
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.69 E-value=1.3 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHh-CCCCEEEEcCCCCcchHH
Q 003100 401 QMTRVQEATLSACL-EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 401 ~~t~iQ~~aI~~il-~g~dvIv~a~TGSGKTla 432 (848)
.+++-|.+.+.... .+..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 35677777776555 478899999999999984
No 381
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.67 E-value=3 Score=43.67 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.8
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
++|+.||.|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 689999999999984
No 382
>PRK10689 transcription-repair coupling factor; Provisional
Probab=85.48 E-value=1.8 Score=56.08 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-CccccccCCCCCeeE
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSARGMDYPDVTSVV 710 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-vl~rGlDip~V~~VI 710 (848)
.+.+++|.+||..-|..++..|.+. ++.+..+++..+..++..++....+|..+|+|+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3578999999999999998888753 46788899999999999999999999999999996 344557778888887
Q ss_pred E
Q 003100 711 Q 711 (848)
Q Consensus 711 ~ 711 (848)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 383
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=85.47 E-value=1.6 Score=48.77 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=26.3
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+++|||+||.|... -...+.+++..=|...-+|+.|
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 357899999999999765 3555666666634444444444
No 384
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.27 E-value=4 Score=46.97 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.||+|+|||..
T Consensus 37 ~~ilL~GppGtGKTtL 52 (413)
T PRK13342 37 SSMILWGPPGTGKTTL 52 (413)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3789999999999985
No 385
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.97 E-value=6.1 Score=49.02 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=27.0
Q ss_pred cEEEEecccccccccc----hhhHHHHHHhcCccceeEEEeccCChHHH
Q 003100 536 KMLVLDEADHLLDLGF----RKDVENIVDCLPRRRQSLLFSATMPKEVR 580 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf----~~~l~~Il~~l~~~~Q~ll~SATl~~~v~ 580 (848)
.+|+|||+|.+...|- ..++..++..+-..-++.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 5899999999975442 22344444433334456666677666543
No 386
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=84.96 E-value=18 Score=40.00 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=50.7
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH-HHH---HHHHHhhcCCCceEEEEeCCcc
Q 003100 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ-IAA---EAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 420 Iv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q-i~~---~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
++.++-|+|||.+.++-++..+..... ...++++ ||..-+.+ +.. .+..+......+........ .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR-K 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC-c
Confidence 577899999999877777766654432 1245555 66544444 333 22222222111111100111 1
Q ss_pred hhHhhhhhhcCCCcEEEeChHH--HHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHH
Q 003100 496 FKVDQRRLESDPCQILVATPGR--LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgr--Ll~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
. .+ .++..|.+.+-.. -..-+. =..+.+||+||+-.+.+..+...+....
T Consensus 71 ~-----~~-~nG~~i~~~~~~~~~~~~~~~--------G~~~~~i~iDE~~~~~~~~~~~~~~~~~ 122 (384)
T PF03237_consen 71 I-----IL-PNGSRIQFRGADSPDSGDNIR--------GFEYDLIIIDEAAKVPDDAFSELIRRLR 122 (384)
T ss_dssp E-----EE-TTS-EEEEES-----SHHHHH--------TS--SEEEEESGGGSTTHHHHHHHHHHH
T ss_pred E-----Ee-cCceEEEEecccccccccccc--------ccccceeeeeecccCchHHHHHHHHhhh
Confidence 0 01 3445566665221 111111 1357899999998876554444443333
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.86 E-value=1.9 Score=43.24 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=18.4
Q ss_pred CCccEEEEecccccc--cccchhhHHHHHH
Q 003100 533 MGLKMLVLDEADHLL--DLGFRKDVENIVD 560 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll--~~gf~~~l~~Il~ 560 (848)
...+++||||+=.|- ..+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 467899999999875 4458888877777
No 388
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.84 E-value=1.5 Score=49.13 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
++..+++++|+|+||||||.. +-.++..+ .. .-+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i----~~-------~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI----PP-------QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc----CC-------CCCEEEECCCcccc
Confidence 344688999999999999993 22222222 11 12467777777763
No 389
>PHA00729 NTP-binding motif containing protein
Probab=84.72 E-value=6.2 Score=41.50 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=37.9
Q ss_pred cEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-ch----hhHHHHHHhcCccceeEEEeccCChHHHHHH
Q 003100 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FR----KDVENIVDCLPRRRQSLLFSATMPKEVRRIS 583 (848)
Q Consensus 509 ~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-f~----~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~ 583 (848)
.+++.+...|+..+.... .....+++|||||+-.-+... +. .....+...+....+++.+...-+..+....
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 455666666666665321 112345789999943222110 11 2223344555555677777766555555443
Q ss_pred H
Q 003100 584 Q 584 (848)
Q Consensus 584 ~ 584 (848)
+
T Consensus 137 r 137 (226)
T PHA00729 137 R 137 (226)
T ss_pred H
Confidence 3
No 390
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.64 E-value=4.2 Score=44.34 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
++.+++++|||+|||...
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446779999999999863
No 391
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=84.60 E-value=0.88 Score=53.22 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=37.1
Q ss_pred CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 417 ~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.++++.|+||||||..|++|.+ + .... -+||+-|--+|+........+.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l-~~~~----------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--L-NYPG----------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--H-hccC----------CEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999999976 2 2211 2788899999987766655544
No 392
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=84.58 E-value=4.1 Score=44.43 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
+.++++.||+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999864
No 393
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=84.56 E-value=2.6 Score=42.63 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
.++.||++||||.- ++-.+..+... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~----------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA----------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT----------T-EEEEEEES
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC----------CCeEEEEEec
Confidence 47889999999996 44444444332 2368888885
No 394
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=84.48 E-value=3 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.3
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..+++++|+|+||||||..
T Consensus 157 v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH
Confidence 44688999999999999993
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.43 E-value=13 Score=42.96 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.7
Q ss_pred CEEEEcCCCCcchHHH
Q 003100 418 DAVVKAKTGTGKSIAF 433 (848)
Q Consensus 418 dvIv~a~TGSGKTlaf 433 (848)
-+++++++|+|||+..
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4679999999999963
No 396
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.39 E-value=1.5 Score=42.92 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=30.7
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
..+++++||...-+|......+..++..+....++++++..-..
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46889999999988877777777777765443345555544433
No 397
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.30 E-value=6.5 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=27.5
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+++||||||+|.... ...+.+++..-|+...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3568999999999987543 345566666656666666554
No 398
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=84.25 E-value=9.6 Score=42.43 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=28.2
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
....+++|+|++|.|... ....+.+++...+....+|+ +++-
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Il-vth~ 152 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLL-VSHA 152 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEE-EeCC
Confidence 356889999999998654 56667777777665544444 4443
No 399
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=84.21 E-value=0.62 Score=53.04 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
+++++|+||||||.++++|.+-. .. ..++|+-|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~~----------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---WP----------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---CC----------CCEEEEccchhHHHHHHHHHHH
Confidence 57899999999999999887632 11 1488999998998766554443
No 400
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.13 E-value=5.5 Score=48.22 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=24.0
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+++||||+|.|.... ...+.+.+..-+...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987543 233444455444443344433
No 401
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=84.08 E-value=4.5 Score=44.89 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhc
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~ 588 (848)
+-.+|.|||+|++...+ ..++--.-.+--+++.-||--+.-..+...++.
T Consensus 222 rkTilFiDEiHRFNksQ-----QD~fLP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQ-----QDTFLPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred ceeEEEeHHhhhhhhhh-----hhcccceeccCceEEEecccCCCccchhHHHHh
Confidence 34679999999964321 111111112334677788865554445444443
No 402
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.88 E-value=3.9 Score=46.69 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 45799999999999984
No 403
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.68 E-value=2.2 Score=48.45 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.4
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+-.|+.+++.|++|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34689999999999999984
No 404
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=83.56 E-value=3.9 Score=48.97 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=65.3
Q ss_pred CCCceEEEEEecchH----HHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc-cccccCCCCCee
Q 003100 635 TPDYKVIVFCSTGMV----TSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-ARGMDYPDVTSV 709 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~----a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl-~rGlDip~V~~V 709 (848)
..++++.+-+||--- +..+.+.|...++.+..+.|.+....|..++....+|.++|+|.|-++ .-.+++.+.-+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 357899999999554 455555666678999999999999999999999999999999999764 578999999998
Q ss_pred EE
Q 003100 710 VQ 711 (848)
Q Consensus 710 I~ 711 (848)
|.
T Consensus 389 Ii 390 (677)
T COG1200 389 II 390 (677)
T ss_pred EE
Confidence 83
No 405
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.20 E-value=6.1 Score=41.55 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=19.7
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
..|.-++|.|++|+|||.. ++-++.++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~-~~~~~~~~~ 38 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF-ALNIAENIA 38 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 3567788999999999984 444443333
No 406
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.19 E-value=16 Score=44.46 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=18.6
Q ss_pred CCccEEEEecccccccccchhhHHHHHHh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDC 561 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~ 561 (848)
...++|||||||.|.... ...+.+.+..
T Consensus 120 ~~~KViIIDEad~Lt~~a-~naLLK~LEe 147 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA-FNALLKTLEE 147 (620)
T ss_pred CCceEEEEECccccCHHH-HHHHHHHHhc
Confidence 467899999999986532 2334444444
No 407
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.99 E-value=2.9 Score=51.10 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.+++-|++++... ...++|.|..|||||.+ +..=+.++.....-. +-.+|.++=|+..|.++.+++.+++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v~------p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGVD------PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCcC------hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999875 66889999999999998 444444555443211 22589999999999999999999886
No 408
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.76 E-value=5.9 Score=39.73 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
+.+-+++++||.-.-+|......+..++..+.+. .+++++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999988887777777777766443 34444433
No 409
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.67 E-value=5.4 Score=42.88 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.5
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-++|.+++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466788999999999985
No 410
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.66 E-value=28 Score=38.65 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=72.3
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEE-cCc-HHHHHHHHHHHHHHhhcCCCceEEE-EeCCc
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL-CPT-RELASQIAAEAIALLKNHDGIGVLT-LVGGT 494 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL-~PT-reLa~Qi~~~l~~l~~~~~~i~v~~-l~gg~ 494 (848)
.+++++-.|+|||+. +.=|.+.+.... .++++. +-| |+-|.++...+-+.+ ++.+.. -.|+.
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~~g---------~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~D 205 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQQG---------KSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGAD 205 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHHCC---------CeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCC
Confidence 356889999999995 444444444321 134443 334 777666555544443 333332 12222
Q ss_pred chhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc-cchhhHHHHHHhcCccce-----e
Q 003100 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQ-----S 568 (848)
Q Consensus 495 ~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l~~~~Q-----~ 568 (848)
+.. ...+.++.. .-.++++|++|=|-||-+. +.-..+.+|.+-+.+... +
T Consensus 206 pAa-------------------VafDAi~~A-----kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ 261 (340)
T COG0552 206 PAA-------------------VAFDAIQAA-----KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEI 261 (340)
T ss_pred cHH-------------------HHHHHHHHH-----HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceE
Confidence 211 123344332 2357889999999998653 355667777766655432 4
Q ss_pred E-EEeccCChHHHHHHHHH
Q 003100 569 L-LFSATMPKEVRRISQLV 586 (848)
Q Consensus 569 l-l~SATl~~~v~~l~~~~ 586 (848)
+ .+-||...+--.-++.+
T Consensus 262 llvlDAttGqnal~QAk~F 280 (340)
T COG0552 262 LLVLDATTGQNALSQAKIF 280 (340)
T ss_pred EEEEEcccChhHHHHHHHH
Confidence 4 44899877655545444
No 411
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.60 E-value=5.7 Score=47.67 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCCh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
...+++||||||.|.... ...+...+..-+...-+| +.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfI-L~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFI-FATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEE-EECCChH
Confidence 457899999999986432 334555555544444334 4444433
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.50 E-value=6.5 Score=42.56 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHhC-C--CCEEEEcCCCCcchH
Q 003100 408 ATLSACLE-G--KDAVVKAKTGTGKSI 431 (848)
Q Consensus 408 ~aI~~il~-g--~dvIv~a~TGSGKTl 431 (848)
..++.+.. + +++++.+++|+|||+
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 34455543 3 588999999999999
No 413
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=2.7 Score=52.75 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCCcccccCcccCCCCHHHHHHHHHcCCCCC-cHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 372 EEPILSQKRFDECGISPLTIKALTAAGYIQM-TRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 372 ~~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~-t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
.........|+++|....++..|+.+-...+ +|-+-.-+ .|.--+-|+..+|.|+|||+.
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 3344455679999988888888887644322 22221111 122256799999999999984
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.23 E-value=6.4 Score=48.90 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=29.7
Q ss_pred ccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
...|++++--...++.+.++ .+..+.-++.-. +..++.+++.||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 35688886555555555432 111111111111 12357899999999999984
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.21 E-value=4.4 Score=40.42 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=31.4
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
..+-+++++||--.-+|......+..++..+... .+++++..
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh 153 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAH 153 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 3466899999999989888888888888777554 45555533
No 416
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=82.19 E-value=1.2 Score=53.71 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
..++++.||||||||..|++|.+-.. . .-+||+=|--|+........++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~---~----------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW---E----------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC---C----------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 35799999999999999999987432 1 13789999999988777665553
No 417
>PRK09087 hypothetical protein; Validated
Probab=82.15 E-value=4 Score=42.96 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=24.8
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCc-cceeEEEeccCChH
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~-~~Q~ll~SATl~~~ 578 (848)
.+|+||++|.+.. -...+..+++.+.. ..++|+.|.|.|..
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 3699999998632 24556777766655 34544444444443
No 418
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.01 E-value=4.4 Score=48.16 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=16.4
Q ss_pred hCCCCEEEEcCCCCcchH
Q 003100 414 LEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTl 431 (848)
..|+-+.+.|++|||||+
T Consensus 359 ~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 359 PPGERVAILGPSGSGKST 376 (529)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 458889999999999998
No 419
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=81.97 E-value=11 Score=39.43 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|..+++.+++|+|||..
T Consensus 19 ~G~~~~i~G~~G~GKT~l 36 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIF 36 (229)
T ss_pred CCeEEEEECCCCCChHHH
Confidence 467889999999999985
No 420
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.57 E-value=2 Score=48.47 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+.-++|++|||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 466789999999999994
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=81.49 E-value=3.5 Score=41.16 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=31.2
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
+.+-+++++||.-.-+|......+..++..+.....+++++..
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4567899999999999988788888888766443335555444
No 422
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=1.2 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=18.7
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+..|+++.+|||||||+.++ .|..++
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~L 121 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKIL 121 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHh
Confidence 34589999999999999433 344444
No 423
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=81.42 E-value=6.1 Score=46.00 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=55.7
Q ss_pred eEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cccc----ccCCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG----MDYPD 705 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~rG----lDip~ 705 (848)
-.|||+||++-|..+.++|... ++.+..|.|+|....+++++.. .-.|+|||.- +..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3899999999999999998765 7899999999999999999876 6789999972 1111 15677
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
|+|.|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 787763
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.39 E-value=7.7 Score=45.71 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.-++|.+++|+|||+.. +-.+....+.+ -+++|++ .-|-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~-~~f~~~~~~~g----------e~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLV-SKFLENACANK----------ERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHHCC----------CeEEEEE-eeCCHHHHHHHHHHc
Confidence 3567899999999999952 22222222221 2577776 456667777777655
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=81.36 E-value=6.6 Score=38.05 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.+-+++++||.-.-+|......+..++..+. .+++++..
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 4568899999999888877777777777652 35555443
No 426
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.35 E-value=0.97 Score=45.34 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=27.0
Q ss_pred CCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 507 ~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
.++|||++...|++-........+. .+-.+|||||||.+.+.
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHHH
Confidence 3799999999887654333111122 24478999999998653
No 427
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=81.25 E-value=8.6 Score=45.19 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHhC------C----CCEEEEcCCCCcchHHHH-HHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHH
Q 003100 401 QMTRVQEATLSACLE------G----KDAVVKAKTGTGKSIAFL-LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~------g----~dvIv~a~TGSGKTlafl-LPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~ 469 (848)
.+-|+|.-++-.|+. + +..+|..|-+-|||.... |.....+.... .+-...|++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~--------~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR--------SGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh--------cCCcEEEEeccHHHHH
Confidence 377999999988873 1 356888999999998543 32333333321 1236899999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 470 Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
+.+..++..+...+.+...+ ........|.+.--...+..+..... ...-.+..+.|+||.|.....
T Consensus 133 ~~F~~ar~mv~~~~~l~~~~------------~~q~~s~~i~~~~~~s~ik~~aa~~~-~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDDDLRDLC------------NVQTHSRTITHRKTDSTIKAVAADPN-TVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCcchhhhh------------ccccceeEEEecccceeeeeeccCCC-cccCCCcceEEEehhhhhcCH
Confidence 99988888776543221111 01111111222111111222222211 122345688999999997654
Q ss_pred cchhhHHHHHHhc--CccceeEEEec
Q 003100 550 GFRKDVENIVDCL--PRRRQSLLFSA 573 (848)
Q Consensus 550 gf~~~l~~Il~~l--~~~~Q~ll~SA 573 (848)
+ ..+..+..-+ .++.+++..|-
T Consensus 200 ~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhhhccCcCceEEEEec
Confidence 2 3444444433 24556666554
No 428
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.21 E-value=9.8 Score=44.65 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=69.0
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Ccccc-ccCCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSARG-MDYPDV 706 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~rG-lDip~V 706 (848)
...+||.+||++-|..+...+.+. ++.+.+++|+.+...+.+.++ ..+.|+|||. .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 446999999999999999988776 455889999998776665543 3478999995 44555 788899
Q ss_pred CeeE--------EcCCCCChhHHHHHhhccCC
Q 003100 707 TSVV--------QVGIPPDREQYIHRLGRTGR 730 (848)
Q Consensus 707 ~~VI--------~yd~P~s~~~yiQRiGRaGR 730 (848)
+++| ..++-..+...++.++|+-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9988 34455567778888888776
No 429
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=81.19 E-value=1.7 Score=45.29 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=12.3
Q ss_pred EEEEcCCCCcchHH
Q 003100 419 AVVKAKTGTGKSIA 432 (848)
Q Consensus 419 vIv~a~TGSGKTla 432 (848)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999994
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=81.16 E-value=4.9 Score=49.90 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=29.4
Q ss_pred cCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..|++++-.+.+.+.|... .+..+..++.. .+...+.+++.||+|+|||+.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHH
Confidence 4677777777776666542 11111111110 011245689999999999984
No 431
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=80.99 E-value=11 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=34.0
Q ss_pred cCCccEEEEecccccccccch--hhHHHHHHhcCccceeEEEeccCChHHHHHHHH
Q 003100 532 LMGLKMLVLDEADHLLDLGFR--KDVENIVDCLPRRRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~--~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~ 585 (848)
-..+++||+||+-..++.|+. ..+..++...|...-+|+.--.+|+++...+..
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 357899999999998887753 556667776666777777766777777665543
No 432
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=80.80 E-value=8.8 Score=38.98 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cc-ccccCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPD 705 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~-rGlDip~ 705 (848)
...++||.|++...+......+... ++.+..++|+.+..+..... .+...|+|+|.- +. .-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999888887777655 67788899988765554333 267789999952 22 2256677
Q ss_pred CCeeE
Q 003100 706 VTSVV 710 (848)
Q Consensus 706 V~~VI 710 (848)
+.+||
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 77776
No 433
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=80.58 E-value=8.8 Score=43.90 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=27.5
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChH
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~ 578 (848)
.+.+++||||+|+|.... ...+.+++..-++.. ++++++|-+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 467899999999997543 345555665544444 45555554443
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.40 E-value=2 Score=35.60 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=19.0
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
|..+++.+++|||||. ++-+++.++
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHH
Confidence 4578999999999999 455555544
No 435
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=80.37 E-value=6.4 Score=47.24 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=27.9
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEE
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
+++-.++|+|||..-+|..-...+.+.+..+.+++.+++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 4455789999999988877677777777655555544443
No 436
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=80.21 E-value=3.1 Score=54.15 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~ 481 (848)
.+++++|.|..|||||.+-..-++..++...... .-.+|||+.|+..|..+..++.+-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~------v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLD------VDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCC------hhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 4779999999999999986666777776643111 126899999999999999888876654
No 437
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.17 E-value=2.4 Score=41.96 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=58.8
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
.++|.++.|+|||.+ ++-+.+.+...+..- .. |++|- +.+-.+ -.++.+..+..|....
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~kv--------gG-f~t~E----------VR~gGk-R~GF~Ivdl~tg~~~~ 65 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYKV--------GG-FITPE----------VREGGK-RIGFKIVDLATGEEGI 65 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCcee--------ee-EEeee----------eecCCe-EeeeEEEEccCCceEE
Confidence 578999999999996 555666666553321 12 44442 111111 1244554444332211
Q ss_pred HhhhhhhcCCCcEEEeChHHHHHHHHhcc--CcccccCCccEEEEecccccc--cccchhhHHHHHHhc
Q 003100 498 VDQRRLESDPCQILVATPGRLLDHIENKS--GLSVRLMGLKMLVLDEADHLL--DLGFRKDVENIVDCL 562 (848)
Q Consensus 498 ~~~~~l~~~~~~IIV~TPgrLl~~L~~~~--~~~~~l~~l~~lVIDEAH~ll--~~gf~~~l~~Il~~l 562 (848)
...... ...-|+-++...+.+..-. .....+..-+++||||+--|- ...|...+..++..-
T Consensus 66 la~~~~----~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 66 LARVGF----SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred EEEcCC----CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 000000 1222333333323222110 000112335899999999764 445888888887653
No 438
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=79.97 E-value=8 Score=40.28 Aligned_cols=51 Identities=25% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
|.-+++.+++|+|||.. ++-++....+.+ -.++|+.-. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~-~~~~~~~~~~~g----------~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF-SLQFLYQGLKNG----------EKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHhCC----------CeEEEEECC-CCHHHHHHHHHHc
Confidence 56788999999999874 222222222211 146676543 4456666665544
No 439
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=79.90 E-value=10 Score=38.86 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCc---cceeEEEeccCChHH
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPR---RRQSLLFSATMPKEV 579 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~---~~Q~ll~SATl~~~v 579 (848)
.+-+++|+||...-++......+.+++..+.. ..+++++|.--...+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 56789999999999988777777776655422 356788776544433
No 440
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=79.80 E-value=3.3 Score=46.36 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHH
Q 003100 391 IKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTla 432 (848)
+..|.+.|+ +++.+.+.+..+.. +.+++++++||||||..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 455556665 45667777765554 67999999999999983
No 441
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=79.80 E-value=4.1 Score=46.88 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
..++++.+|||+|||+.
T Consensus 108 ~~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 108 KSNILLIGPTGSGKTLL 124 (412)
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46799999999999985
No 442
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=79.76 E-value=12 Score=43.68 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEE
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll 570 (848)
...++|||||+|.|.... ...+.+.+..-+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 467899999999986532 3344455555444443444
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.72 E-value=4.5 Score=49.56 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=37.0
Q ss_pred ccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 535 l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
--++|||..|.+.+......+..++++.|.+.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 358999999999998878889999999999999999887755
No 444
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=79.49 E-value=38 Score=41.92 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc-------cceeeecCCcchhhHHHHHHHHhc-------
Q 003100 620 HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-------MNVREMYSRKPQLYRDRISEEFRA------- 685 (848)
Q Consensus 620 k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~-------~~v~~lhg~ls~~~R~~i~~~F~~------- 685 (848)
....|-+.|...... -...+|||++++...+.+.......+ ..- .+..-.+...-..++..|.+
T Consensus 545 y~~~lg~~i~~v~rv-Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes 622 (945)
T KOG1132|consen 545 YLSELGEAILNVARV-VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPES 622 (945)
T ss_pred HHHHHHHHHHHHHhh-cccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccc
Confidence 344444444443332 34569999999988777755443311 111 22222233344555566653
Q ss_pred -CCceEEEecCCccccccCCC--CCeeEEcCCC
Q 003100 686 -SKRLILVTSDVSARGMDYPD--VTSVVQVGIP 715 (848)
Q Consensus 686 -G~~~VLVaTdvl~rGlDip~--V~~VI~yd~P 715 (848)
|..-+.||---+++|+|+.+ -+.||..++|
T Consensus 623 ~ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 623 SGAVFFAVCRGKVSEGLDFSDDNGRAVIITGLP 655 (945)
T ss_pred cceEEEEEecccccCCCCccccCCceeEEecCC
Confidence 33355677788899999976 5679999987
No 445
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=79.48 E-value=5 Score=41.31 Aligned_cols=54 Identities=24% Similarity=0.419 Sum_probs=44.8
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHH
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQL 585 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~ 585 (848)
.++-+++|+||.-.=+|......+..++..+...-..++||.-.-.+++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 456789999999998888788888888988888788899998887887766654
No 446
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=79.47 E-value=5 Score=50.92 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEec-CCccccccCCCCCeeE
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTS-DVSARGMDYPDVTSVV 710 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT-dvl~rGlDip~V~~VI 710 (848)
.++++.|.+||.--|+.-++.|++. .++|..+..-.+.+++..+++..++|+++|+|.| ..+..+|-+.++.+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 5689999999987777777766654 6788899999999999999999999999999999 4677899999999988
No 447
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.39 E-value=7.2 Score=43.55 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.3
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
..++.||.|+|||..
T Consensus 38 ~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI 52 (355)
T ss_pred EEEEECCCCCCHHHH
Confidence 568999999999985
No 448
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=3.7 Score=49.45 Aligned_cols=41 Identities=32% Similarity=0.362 Sum_probs=30.9
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
+++-.++|+|||-.-+|..-...+.+.+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 4567899999999999987777777888777666 4455433
No 449
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.19 E-value=16 Score=41.12 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.++++||.|+|||..
T Consensus 40 ~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 40 QALLFCGPRGVGKTTC 55 (367)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678999999999985
No 450
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=79.14 E-value=6.8 Score=47.67 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Cccc-cccCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSAR-GMDYP 704 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~r-GlDip 704 (848)
...++||.|||+.-+..++..+... ++.+..+||+.+...+...+ .....|+|+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 3458999999999999888877654 67889999998765444333 34578999995 3333 36888
Q ss_pred CCCeeE
Q 003100 705 DVTSVV 710 (848)
Q Consensus 705 ~V~~VI 710 (848)
++.+||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 888887
No 451
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=79.13 E-value=11 Score=43.36 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=19.2
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
..|.-+++.|++|+|||.. ++-+..++
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia~~~ 218 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIAENV 218 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHHHHH
Confidence 3466778999999999985 44444333
No 452
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.12 E-value=9.8 Score=44.80 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=23.7
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
.....++||||||.|....+ ..+...+...+... ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 35678999999998865433 33444444433333 4444434
No 453
>PRK10865 protein disaggregation chaperone; Provisional
Probab=79.06 E-value=15 Score=46.41 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
..++|+.||+|+|||..
T Consensus 199 ~~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAI 215 (857)
T ss_pred cCceEEECCCCCCHHHH
Confidence 45899999999999985
No 454
>PRK14701 reverse gyrase; Provisional
Probab=79.03 E-value=5.8 Score=53.12 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=53.6
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
.+.++||.+||+.-+..++..|... ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3568999999999999999888774 456789999999999999999999999999999974
No 455
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=79.00 E-value=10 Score=47.34 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999984
No 456
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=79.00 E-value=2.8 Score=45.26 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 403 TRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 403 t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
.+.|.+.+..++. +.-+++.++||||||.. +-.++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 4456666655443 34588999999999995 33344443
No 457
>PRK10436 hypothetical protein; Provisional
Probab=78.97 E-value=2.5 Score=49.28 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 403 TRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 403 t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
.+.|.+.+..++. +.-+++++|||||||.. +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3445555554443 44688999999999995 33445443
No 458
>PF12846 AAA_10: AAA-like domain
Probab=78.96 E-value=2.8 Score=45.18 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~ 469 (848)
+.+++|.|+||||||.... .++..+...+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g----------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG----------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC----------CCEEEEcCCchHHH
Confidence 4689999999999998744 5555555443 35778877755544
No 459
>PRK04328 hypothetical protein; Provisional
Probab=78.73 E-value=4.1 Score=43.47 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|..++|.+++|+|||+..+--+.+.+.+. -.++|+. +-+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-----------e~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-----------EPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-----------CcEEEEE-eeCCHHHHHHHHHHc
Confidence 366788999999999984222233323221 1466665 444445555555544
No 460
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.71 E-value=2.9 Score=41.45 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
.+-+++++||.-.-+|......+..++..+...-.+++++..-
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568899999999888887888888887664433455555443
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.47 E-value=3.4 Score=41.52 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=35.1
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCcc-ceeEEEeccCChHH
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATMPKEV 579 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~-~Q~ll~SATl~~~v 579 (848)
+.+-+++|+||--.-+|......+..++..+.+. -.+++++..-...+
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4567899999999999988888888888776554 35666665544433
No 462
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.47 E-value=4 Score=40.34 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.7
Q ss_pred EEEEcCCCCcchHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLP 436 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLP 436 (848)
.|+.++.|||||..|...
T Consensus 5 ~IvaG~NGsGKstv~~~~ 22 (187)
T COG4185 5 DIVAGPNGSGKSTVYAST 22 (187)
T ss_pred EEEecCCCCCceeeeecc
Confidence 478899999999987553
No 463
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.44 E-value=1.1e+02 Score=33.72 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=29.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-----CEEEEcCCCCcchH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK-----DAVVKAKTGTGKSI 431 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~-----dvIv~a~TGSGKTl 431 (848)
..|+++.=-+...++|++.=+.. + -+|.+..|+ -+++.+|.|+||+.
T Consensus 130 VkWsDVAGLE~AKeALKEAVILP---I---KFPqlFtGkR~PwrgiLLyGPPGTGKSY 181 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILP---I---KFPQLFTGKRKPWRGILLYGPPGTGKSY 181 (439)
T ss_pred CchhhhccchhHHHHHHhheeec---c---cchhhhcCCCCcceeEEEeCCCCCcHHH
Confidence 45776643445566665532221 1 135677765 48899999999997
No 464
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=78.42 E-value=9.1 Score=42.40 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=26.6
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
...+++|||+||.|... -...+.+++..-| +..+|+.|.
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 57899999999998764 3455666676655 554444443
No 465
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.40 E-value=16 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
..++++.||+|+|||..
T Consensus 194 ~~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAI 210 (852)
T ss_pred CCceEEEcCCCCCHHHH
Confidence 45899999999999985
No 466
>PRK13764 ATPase; Provisional
Probab=78.17 E-value=4.1 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=19.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
.+++++++++||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 34444444
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=78.12 E-value=4.4 Score=45.46 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.5
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+..++++||||||||..
T Consensus 121 ~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT 138 (343)
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 356789999999999995
No 468
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.03 E-value=15 Score=41.03 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=26.6
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+++||||||.|.... ...+.+++..-|+...+|+.|
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEe
Confidence 3567899999999987642 445666666655555555533
No 469
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=77.96 E-value=9.1 Score=38.70 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=39.1
Q ss_pred CCccEEEEecccccccccc--hhhHHHHHHhcCccceeEEEeccCChHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQ 584 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~ 584 (848)
..+++||+||+-..++.|+ .+.+..++...|...-+|+.--..|+++...+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 4689999999999888774 355666777777777777777777887765553
No 470
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=77.94 E-value=2.5 Score=48.24 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=33.4
Q ss_pred HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
.-...+++++.|.||||||.+ +-+++..+...+ -++||.=|.-+....
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g----------~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRARG----------DRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT-----------EEEEEEETTHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcC----------CEEEEEECCchHHHH
Confidence 345678999999999999984 567777776542 268888888776543
No 471
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=77.87 E-value=9.7 Score=45.67 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=23.9
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
....+++||||+|.|.... ...+.+.+...+ ..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp-~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPP-PYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCC-CCEEEEEecCC
Confidence 3568899999999986542 233444444433 33344444443
No 472
>PRK04841 transcriptional regulator MalT; Provisional
Probab=77.79 E-value=19 Score=45.75 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=33.6
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCC
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~ 576 (848)
-+||||++|.+.+......+..++...+....+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 57999999998766566788888888888888888887754
No 473
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=77.79 E-value=4.3 Score=44.44 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
.++++.||.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999984
No 474
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.73 E-value=19 Score=44.83 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
..++|+.||+|+|||..
T Consensus 203 ~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCceEEECCCCCCHHHH
Confidence 45899999999999995
No 475
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=77.49 E-value=7.7 Score=41.45 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
|.=+++.|.||.|||.. ++-+..++.... +..++|++.= .-..++..++..... ++....+..+.-
T Consensus 19 g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~---------~~~vly~SlE-m~~~~l~~R~la~~s---~v~~~~i~~g~l 84 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAF-ALQIALNAALNG---------GYPVLYFSLE-MSEEELAARLLARLS---GVPYNKIRSGDL 84 (259)
T ss_dssp T-EEEEEESTTSSHHHH-HHHHHHHHHHTT---------SSEEEEEESS-S-HHHHHHHHHHHHH---TSTHHHHHCCGC
T ss_pred CcEEEEEecccCCchHH-HHHHHHHHHHhc---------CCeEEEEcCC-CCHHHHHHHHHHHhh---cchhhhhhcccc
Confidence 45678999999999985 555555554432 1257777652 112233333333322 221111111211
Q ss_pred hhHhh-------hhhhcCCCcEEE-e----ChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 496 FKVDQ-------RRLESDPCQILV-A----TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 496 ~~~~~-------~~l~~~~~~IIV-~----TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
...+. ..+.. ..+.| . |++.|...+... ......+++||||=.|.+...
T Consensus 85 ~~~e~~~~~~~~~~l~~--~~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 85 SDEEFERLQAAAEKLSD--LPLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTS
T ss_pred CHHHHHHHHHHHHHHhh--CcEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCC
Confidence 11111 12222 23433 3 344555444432 112267899999999988653
No 476
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.46 E-value=32 Score=40.65 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh---Hhhh
Q 003100 425 TGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQR 501 (848)
Q Consensus 425 TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~---~~~~ 501 (848)
.++||+..-++.+.+.+... . .+.+||.+-+.+-|.|++..+. .+.++.+..++|..... ....
T Consensus 366 vF~gse~~K~lA~rq~v~~g-~--------~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-F--------KPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-C--------CCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHH
Confidence 36788877666555555433 1 2358888999999999888876 34588999999985433 3345
Q ss_pred hhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 502 RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 502 ~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
.+..+...|+||| +.|.+. +++.++.+||.+..-
T Consensus 433 ~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 6667778999999 566665 667899999996554
No 477
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=77.43 E-value=4.8 Score=43.04 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=17.1
Q ss_pred HhCCCCEEEEcCCCCcchH
Q 003100 413 CLEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTl 431 (848)
+-.|+.+++.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4568999999999999997
No 478
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.28 E-value=11 Score=45.40 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=53.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhH---hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~---~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+..|.++++.+.+. ++.+..++|+..... ....+..+..+||||| +.+... +++.
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----IDip 324 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LHID 324 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CCcc
Confidence 6899999999999988877654 677889998866443 3345556778999999 344443 5677
Q ss_pred CccEEEEecc
Q 003100 534 GLKMLVLDEA 543 (848)
Q Consensus 534 ~l~~lVIDEA 543 (848)
++++||.-..
T Consensus 325 ~V~~VInyd~ 334 (572)
T PRK04537 325 GVKYVYNYDL 334 (572)
T ss_pred CCCEEEEcCC
Confidence 8888876443
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.26 E-value=8.4 Score=48.60 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.3
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.++++||||+|||..
T Consensus 598 ~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 598 VFLLVGPSGVGKTET 612 (852)
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999985
No 480
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=18 Score=43.70 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHh--------CCCCEEEEcCCCCcchHH
Q 003100 401 QMTRVQEATLSACL--------EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 401 ~~t~iQ~~aI~~il--------~g~dvIv~a~TGSGKTla 432 (848)
-|..+-..+++.|. +|+-+++.+|+|-|||-.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI 454 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI 454 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH
Confidence 46677777777654 367788999999999984
No 481
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=77.05 E-value=2.2 Score=52.04 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
..++++.||||||||..|++|-+-. .. --+||+=|--|+........++
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~---~~----------gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT---FK----------GSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc---CC----------CCEEEEeCCchHHHHHHHHHHh
Confidence 4589999999999999999997632 11 1378899998887766554443
No 482
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=76.77 E-value=15 Score=41.29 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred CccEEEEeccccccccc--chhhHHHHHHhcCccceeEEEeccCChHH
Q 003100 534 GLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATMPKEV 579 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g--f~~~l~~Il~~l~~~~Q~ll~SATl~~~v 579 (848)
..-+||+|-||.+-|++ ....+..+-..++...-.+++|+++....
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 35689999999998876 33444455555666666788999987754
No 483
>PRK06904 replicative DNA helicase; Validated
Probab=76.68 E-value=23 Score=41.53 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.2
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
.|.=+|+.|.+|.|||.. .+-+..++
T Consensus 220 ~G~LiiIaarPg~GKTaf-alnia~~~ 245 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTF-AMNLCENA 245 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHH
Confidence 455567889999999984 45444443
No 484
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=76.52 E-value=3.1 Score=49.90 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=28.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 394 LTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
|.++|| .+.|.+.+..++. +.-++++||||||||.. +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 445564 4566666665554 34578999999999986 33445444
No 485
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=76.39 E-value=42 Score=36.48 Aligned_cols=27 Identities=19% Similarity=-0.015 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHhccceeeecCCcc
Q 003100 646 TGMVTSLLYLLLREMKMNVREMYSRKP 672 (848)
Q Consensus 646 s~~~a~~l~~~L~~~~~~v~~lhg~ls 672 (848)
|...|+.+++.|++.+..+...|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 467899999999999999988888764
No 486
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.00 E-value=3.8 Score=45.30 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=42.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHH-HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATL-SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI-~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...|...++++.- |.+ +..+++.|..-+ -++..+++++++++||||||.. +.+++..+-. ..
T Consensus 109 IRk~~~~~~t~~~---l~~--~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~-----------~~ 171 (312)
T COG0630 109 IRKFSDEPITPED---LIE--YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP-----------EE 171 (312)
T ss_pred EEcCCCCCCCHHH---Hhh--cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc-----------hh
Confidence 3344444555433 333 344666666554 4555688999999999999994 4444433211 12
Q ss_pred EEEEEcCcHHH
Q 003100 457 YVLILCPTREL 467 (848)
Q Consensus 457 ~vLIL~PTreL 467 (848)
+.+.+=-|.++
T Consensus 172 rivtIEdt~E~ 182 (312)
T COG0630 172 RIVTIEDTPEL 182 (312)
T ss_pred cEEEEeccccc
Confidence 56666666555
No 487
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=75.93 E-value=3.1 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCC-C-CEEEEcCCCCcchHH
Q 003100 394 LTAAGYIQMTRVQEATLSACLEG-K-DAVVKAKTGTGKSIA 432 (848)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~g-~-dvIv~a~TGSGKTla 432 (848)
|..+|+ .+-|.+.+..++.. + -++++||||||||..
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 344553 46666666665553 3 367999999999995
No 488
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=14 Score=43.02 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHH----HhC--------CCCEEEEcCCCCcchHH
Q 003100 383 ECGISPLTIKALTAAGYIQMTRVQEATLSA----CLE--------GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 383 ~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~----il~--------g~dvIv~a~TGSGKTla 432 (848)
.+|++++-++.....|.-.-.+.-.+.+.. +.+ -..|++.+|.|||||..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL 554 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH
Confidence 357888888888777766544433333321 111 13689999999999974
No 489
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=75.81 E-value=8.7 Score=44.81 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=53.5
Q ss_pred CceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Ccc-ccccCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~-rGlDip~ 705 (848)
..++||.|||++-+..+++.++.. ++.+..++|+.+...+...+. ....|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347999999999999998887764 577889999988765544332 5678999994 222 3578888
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 148 l~~lVi 153 (460)
T PRK11776 148 LNTLVL 153 (460)
T ss_pred CCEEEE
Confidence 999884
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=75.52 E-value=11 Score=43.99 Aligned_cols=52 Identities=31% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.-+++.+++|+|||.. ++-++..+... +.++||+..- +-..|+..+..++
T Consensus 93 ~GsvilI~G~pGsGKTTL-~lq~a~~~a~~----------g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTL-LLQVACQLAKN----------QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCcEEEEECc-CCHHHHHHHHHHc
Confidence 466788999999999995 33333333322 1157887753 4456666555443
No 491
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=75.43 E-value=7 Score=40.59 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCcchHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlafl 434 (848)
|.-+.+.+++|+|||...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcEEEEeCCCCCChhHHHH
Confidence 5677899999999998533
No 492
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=75.40 E-value=4.6 Score=43.81 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=30.3
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
+.+-+++|+||.-.-+|......+..++..+...+ ++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 45568999999999998887778888877665444 4444443
No 493
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=75.23 E-value=41 Score=40.57 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=29.8
Q ss_pred EEEecCCccccccCCCCCeeEEcCCCC--ChhHHHHHhhccCCCC
Q 003100 690 ILVTSDVSARGMDYPDVTSVVQVGIPP--DREQYIHRLGRTGREG 732 (848)
Q Consensus 690 VLVaTdvl~rGlDip~V~~VI~yd~P~--s~~~yiQRiGRaGR~G 732 (848)
+++-+.+-..+=++|+|-+||+..+-. +..+..|-.+|.-|++
T Consensus 548 FvLl~PVd~~~~~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~ 592 (1011)
T KOG2036|consen 548 FVLLGPVDPSQNAIPDVLCVIQVCLEGRISRQSIENSLRRGKRAA 592 (1011)
T ss_pred EEEecCcCcccCCCCcceEEEEEeecceecHHHHHHHHhcccccc
Confidence 344456666566999999999988754 4445677677766654
No 494
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.22 E-value=33 Score=41.67 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=26.0
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEecc
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SAT 574 (848)
....+++||||||.|.... ...+.+++...+... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4578999999999986542 344555566544444 3444444
No 495
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=75.17 E-value=6.7 Score=42.38 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
.++++.+|.|.|||..
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 4789999999999984
No 496
>PF14516 AAA_35: AAA-like domain
Probab=74.81 E-value=3.5 Score=46.04 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 404 RVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 404 ~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
|+.++++..+.+ |.-+.|.||=.+|||.. +.-+++++...
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~~ 58 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQQ 58 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHHC
Confidence 488899999988 88899999999999995 44555555443
No 497
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=74.79 E-value=9.6 Score=46.03 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=32.3
Q ss_pred EEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccc
Q 003100 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (848)
Q Consensus 487 v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~ 549 (848)
+-...||..-..+.+ ...=.=|=+-||++++-|..... .-=+++|||+|.|...
T Consensus 379 vR~sLGGvrDEAEIR---GHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss 432 (782)
T COG0466 379 VRISLGGVRDEAEIR---GHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSS 432 (782)
T ss_pred EEEecCccccHHHhc---cccccccccCChHHHHHHHHhCC------cCCeEEeechhhccCC
Confidence 344556665333332 22112233569999999876531 1236999999998754
No 498
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=74.68 E-value=9.4 Score=40.56 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=56.9
Q ss_pred ccceeeecCCcchhhHHHHHHHHhcC----CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccC-CCCCCc
Q 003100 661 KMNVREMYSRKPQLYRDRISEEFRAS----KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTG-REGKEG 735 (848)
Q Consensus 661 ~~~v~~lhg~ls~~~R~~i~~~F~~G----~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaG-R~G~~G 735 (848)
++.+..++++.+... -.|..+ ...|+|.=+.++||+.+++..+....--+....++.||.==-| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544322 233333 3789999999999999999999998888888888888754455 666677
Q ss_pred eEEEEeCcc
Q 003100 736 EGVLLLAPW 744 (848)
Q Consensus 736 ~~i~l~~~~ 744 (848)
.|-+++++.
T Consensus 185 l~Ri~~~~~ 193 (239)
T PF10593_consen 185 LCRIYMPEE 193 (239)
T ss_pred ceEEecCHH
Confidence 787777554
No 499
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.59 E-value=28 Score=42.33 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=28.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
+..++++-.++..++.+... ++...+ ....++-+++.||+|+|||.+
T Consensus 80 P~~ldel~~~~~ki~~l~~~-------l~~~~~-~~~~~~illL~GP~GsGKTTl 126 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETW-------LKAQVL-ENAPKRILLITGPSGCGKSTT 126 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHH-------HHhccc-ccCCCcEEEEECCCCCCHHHH
Confidence 45678888888777765432 000000 011234488999999999995
No 500
>PRK09354 recA recombinase A; Provisional
Probab=74.35 E-value=8.9 Score=43.02 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=27.7
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
.|+-+.|.+|+|||||.. ++.++...... +-.++|+..--.+-
T Consensus 59 ~G~IteI~G~~GsGKTtL-al~~~~~~~~~----------G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTL-ALHAIAEAQKA----------GGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHc----------CCcEEEECCccchH
Confidence 356778999999999996 44444333322 12577877655444
Done!