Query 003100
Match_columns 848
No_of_seqs 492 out of 3886
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqw_A ATP-dependent RNA helic 100.0 4.8E-58 1.6E-62 544.0 41.0 454 386-846 28-505 (579)
2 2db3_A ATP-dependent RNA helic 100.0 8.8E-57 3E-61 514.9 42.2 361 377-753 54-417 (434)
3 3i5x_A ATP-dependent RNA helic 100.0 6.7E-57 2.3E-61 532.0 40.1 454 385-845 78-555 (563)
4 2i4i_A ATP-dependent RNA helic 100.0 3.3E-53 1.1E-57 480.1 40.7 366 378-754 14-393 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 5E-53 1.7E-57 478.2 36.7 358 377-754 35-393 (410)
6 1xti_A Probable ATP-dependent 100.0 7.8E-52 2.7E-56 464.5 39.5 361 377-754 6-368 (391)
7 3eiq_A Eukaryotic initiation f 100.0 3.4E-52 1.1E-56 471.0 33.8 358 378-754 39-397 (414)
8 3fmp_B ATP-dependent RNA helic 100.0 1.8E-53 6.1E-58 493.1 22.0 365 369-754 82-457 (479)
9 1s2m_A Putative ATP-dependent 100.0 3E-51 1E-55 461.8 39.2 356 378-754 20-375 (400)
10 3fht_A ATP-dependent RNA helic 100.0 3.4E-51 1.1E-55 462.2 39.4 364 370-754 16-390 (412)
11 1hv8_A Putative ATP-dependent 100.0 4E-50 1.4E-54 445.5 38.5 350 378-754 5-355 (367)
12 3pey_A ATP-dependent RNA helic 100.0 3.2E-50 1.1E-54 450.8 37.5 353 378-754 4-367 (395)
13 1fuu_A Yeast initiation factor 100.0 6E-51 2E-55 457.4 20.8 355 379-754 21-376 (394)
14 2z0m_A 337AA long hypothetical 100.0 9.6E-48 3.3E-52 421.7 35.1 332 386-754 1-332 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.9E-47 6.6E-52 452.2 39.5 343 381-753 23-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 6.1E-47 2.1E-51 442.8 33.7 343 379-754 2-353 (523)
17 3l9o_A ATP-dependent RNA helic 100.0 2.6E-46 8.8E-51 469.0 29.1 341 379-752 162-606 (1108)
18 3oiy_A Reverse gyrase helicase 100.0 5.9E-46 2E-50 421.7 26.9 321 390-752 10-371 (414)
19 3fho_A ATP-dependent RNA helic 100.0 3.5E-46 1.2E-50 435.4 19.7 350 381-754 121-481 (508)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.7E-42 6E-47 420.4 39.5 333 379-746 8-410 (715)
21 1tf5_A Preprotein translocase 100.0 1E-43 3.5E-48 422.4 27.0 329 396-746 79-547 (844)
22 2zj8_A DNA helicase, putative 100.0 1.4E-42 4.7E-47 421.6 37.2 332 380-745 2-388 (720)
23 4a2p_A RIG-I, retinoic acid in 100.0 3.6E-43 1.2E-47 412.4 26.8 337 397-745 3-509 (556)
24 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-42 3.8E-47 421.3 29.9 332 380-746 2-390 (702)
25 2ykg_A Probable ATP-dependent 100.0 9.7E-43 3.3E-47 421.1 27.4 346 391-748 3-520 (696)
26 3tbk_A RIG-I helicase domain; 100.0 1.4E-42 4.8E-47 406.6 26.3 336 401-748 4-511 (555)
27 4ddu_A Reverse gyrase; topoiso 100.0 3.7E-42 1.3E-46 431.3 28.7 281 396-716 74-388 (1104)
28 4a2q_A RIG-I, retinoic acid in 100.0 2E-41 6.7E-46 415.7 28.4 338 396-745 243-750 (797)
29 2fsf_A Preprotein translocase 100.0 4.4E-41 1.5E-45 398.6 30.2 328 397-746 71-585 (853)
30 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.6E-45 413.9 35.7 324 396-754 82-510 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 3.2E-40 1.1E-44 377.7 34.9 326 401-744 9-475 (494)
32 1nkt_A Preprotein translocase 100.0 2.5E-39 8.4E-44 383.9 35.2 329 396-746 107-619 (922)
33 4a4z_A Antiviral helicase SKI2 100.0 1.4E-39 4.8E-44 404.7 34.2 319 397-752 36-502 (997)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 5.1E-41 1.8E-45 420.9 20.3 319 392-753 48-463 (1054)
35 4a2w_A RIG-I, retinoic acid in 100.0 3.8E-40 1.3E-44 409.4 25.9 338 396-745 243-750 (936)
36 4gl2_A Interferon-induced heli 100.0 1.1E-40 3.8E-45 403.3 19.3 332 401-743 7-517 (699)
37 4f92_B U5 small nuclear ribonu 100.0 9.8E-39 3.3E-43 413.4 34.4 346 386-753 911-1317(1724)
38 4f92_B U5 small nuclear ribonu 100.0 8.4E-39 2.9E-43 414.1 31.3 345 398-752 76-481 (1724)
39 1gm5_A RECG; helicase, replica 100.0 3.5E-39 1.2E-43 390.0 25.7 321 388-744 356-697 (780)
40 2xau_A PRE-mRNA-splicing facto 100.0 1E-38 3.5E-43 387.8 24.3 338 378-746 71-445 (773)
41 2whx_A Serine protease/ntpase/ 100.0 5.2E-40 1.8E-44 390.0 9.9 314 381-753 151-490 (618)
42 2jlq_A Serine protease subunit 100.0 1E-38 3.5E-43 366.9 16.5 287 398-743 1-310 (451)
43 2eyq_A TRCF, transcription-rep 100.0 1.9E-36 6.7E-41 381.7 36.3 325 384-745 586-923 (1151)
44 2oca_A DAR protein, ATP-depend 100.0 9.3E-38 3.2E-42 364.0 20.9 316 400-742 112-453 (510)
45 1yks_A Genome polyprotein [con 100.0 1.6E-38 5.5E-43 364.0 7.4 279 412-753 4-311 (440)
46 2fwr_A DNA repair protein RAD2 100.0 2.5E-36 8.5E-41 348.6 23.0 289 401-739 93-447 (472)
47 3o8b_A HCV NS3 protease/helica 100.0 4.6E-37 1.6E-41 362.5 16.8 278 401-747 217-517 (666)
48 2wv9_A Flavivirin protease NS2 100.0 4.4E-37 1.5E-41 367.3 13.1 302 393-752 202-544 (673)
49 2z83_A Helicase/nucleoside tri 100.0 1.1E-36 3.6E-41 350.8 13.9 273 410-744 15-313 (459)
50 3fmo_B ATP-dependent RNA helic 100.0 2.5E-34 8.6E-39 312.9 22.8 210 368-591 81-293 (300)
51 2v6i_A RNA helicase; membrane, 100.0 1.7E-34 5.6E-39 329.9 20.9 269 415-741 1-288 (431)
52 3rc3_A ATP-dependent RNA helic 100.0 4.4E-34 1.5E-38 340.6 24.4 305 387-754 130-454 (677)
53 3h1t_A Type I site-specific re 100.0 1E-33 3.6E-38 336.0 21.7 315 400-733 177-545 (590)
54 3fe2_A Probable ATP-dependent 100.0 8.9E-33 3.1E-37 290.9 24.1 210 377-595 27-236 (242)
55 1vec_A ATP-dependent RNA helic 100.0 5.7E-32 1.9E-36 276.7 24.0 201 379-591 3-203 (206)
56 3iuy_A Probable ATP-dependent 100.0 4.7E-32 1.6E-36 282.4 22.4 206 378-591 18-224 (228)
57 3ly5_A ATP-dependent RNA helic 100.0 5.9E-32 2E-36 288.5 22.9 210 377-594 50-261 (262)
58 3ber_A Probable ATP-dependent 100.0 1.3E-31 4.4E-36 283.7 24.4 204 377-592 41-244 (249)
59 2pl3_A Probable ATP-dependent 100.0 2.1E-31 7.1E-36 279.0 25.1 206 377-591 23-228 (236)
60 3bor_A Human initiation factor 100.0 6E-32 2E-36 283.8 20.8 202 378-591 29-230 (237)
61 2oxc_A Probable ATP-dependent 100.0 9.5E-32 3.2E-36 280.9 22.0 200 378-590 23-223 (230)
62 1q0u_A Bstdead; DEAD protein, 100.0 6.1E-32 2.1E-36 279.9 20.2 202 379-592 4-208 (219)
63 3dmq_A RNA polymerase-associat 100.0 1.7E-31 5.7E-36 332.5 27.7 324 400-743 152-612 (968)
64 1t6n_A Probable ATP-dependent 100.0 2.2E-31 7.6E-36 275.5 21.6 203 378-591 13-216 (220)
65 1qde_A EIF4A, translation init 100.0 5.3E-31 1.8E-35 273.3 22.6 200 378-591 13-212 (224)
66 1wrb_A DJVLGB; RNA helicase, D 100.0 3.8E-31 1.3E-35 280.1 21.5 210 377-591 21-235 (253)
67 2gxq_A Heat resistant RNA depe 100.0 8.4E-31 2.9E-35 268.0 22.6 200 380-591 2-201 (207)
68 3jux_A Protein translocase sub 100.0 5.9E-29 2E-33 289.4 38.4 322 397-746 72-589 (822)
69 1z63_A Helicase of the SNF2/RA 100.0 3.1E-30 1.1E-34 299.7 26.0 322 400-752 36-463 (500)
70 3dkp_A Probable ATP-dependent 100.0 1.4E-30 4.8E-35 274.2 20.4 206 378-592 24-237 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.4E-29 2.2E-33 307.8 28.9 319 401-743 271-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 1.3E-27 4.4E-32 292.9 30.6 331 400-752 235-694 (800)
73 1z3i_X Similar to RAD54-like; 100.0 1.2E-26 4.1E-31 277.7 34.9 327 401-743 55-527 (644)
74 1c4o_A DNA nucleotide excision 99.9 1.8E-25 6.1E-30 267.8 28.3 131 619-752 423-558 (664)
75 2ipc_A Preprotein translocase 99.9 7E-24 2.4E-28 251.0 38.9 133 397-547 76-215 (997)
76 2d7d_A Uvrabc system protein B 99.9 1E-24 3.5E-29 261.1 25.5 129 619-750 429-562 (661)
77 3eaq_A Heat resistant RNA depe 99.9 8.6E-25 2.9E-29 225.7 21.0 153 607-763 5-160 (212)
78 2hjv_A ATP-dependent RNA helic 99.9 9.9E-25 3.4E-29 215.7 17.5 147 604-754 6-152 (163)
79 3i32_A Heat resistant RNA depe 99.9 2.6E-24 8.7E-29 233.4 20.8 209 607-824 2-213 (300)
80 2rb4_A ATP-dependent RNA helic 99.9 2.7E-24 9.3E-29 215.0 15.9 147 604-754 4-157 (175)
81 1t5i_A C_terminal domain of A 99.9 2.1E-24 7.3E-29 215.3 14.9 146 605-754 3-149 (172)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.9E-24 2E-28 214.7 15.0 148 604-754 16-163 (185)
83 1fuk_A Eukaryotic initiation f 99.9 5.2E-24 1.8E-28 210.8 13.4 144 607-754 3-147 (165)
84 2p6n_A ATP-dependent RNA helic 99.9 1.2E-23 4.2E-28 213.5 14.5 146 604-754 26-172 (191)
85 2yjt_D ATP-dependent RNA helic 99.8 3.6E-24 1.2E-28 213.1 0.0 144 607-754 3-147 (170)
86 3llm_A ATP-dependent RNA helic 99.9 9E-22 3.1E-26 206.1 17.3 181 387-588 47-229 (235)
87 2vl7_A XPD; helicase, unknown 99.9 5.6E-21 1.9E-25 224.0 22.9 114 622-742 370-519 (540)
88 3b6e_A Interferon-induced heli 99.9 1.2E-21 4E-26 200.8 13.4 170 397-574 29-216 (216)
89 3crv_A XPD/RAD3 related DNA he 99.8 5.1E-19 1.7E-23 208.0 26.6 315 401-743 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.8 4.5E-20 1.6E-24 198.4 12.4 158 401-583 113-270 (282)
91 2fz4_A DNA repair protein RAD2 99.7 4.1E-17 1.4E-21 171.1 16.7 139 400-578 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 2.2E-16 7.5E-21 187.5 24.9 83 401-494 3-89 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 2.4E-16 8.1E-21 168.5 12.3 127 615-743 92-223 (271)
94 1w36_D RECD, exodeoxyribonucle 98.6 9.2E-08 3.2E-12 113.3 9.4 146 403-574 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 97.9 0.00052 1.8E-08 81.5 23.0 72 400-480 8-79 (647)
96 3upu_A ATP-dependent DNA helic 97.8 5E-05 1.7E-09 86.8 11.2 72 394-475 18-94 (459)
97 2gk6_A Regulator of nonsense t 97.8 9E-05 3.1E-09 88.0 13.3 70 399-478 178-247 (624)
98 3e1s_A Exodeoxyribonuclease V, 97.8 6.2E-05 2.1E-09 88.3 11.3 125 401-572 189-313 (574)
99 2xzl_A ATP-dependent helicase 97.7 0.00032 1.1E-08 85.4 15.2 70 399-478 358-427 (802)
100 2wjy_A Regulator of nonsense t 97.6 0.00016 5.6E-09 87.9 11.8 70 399-478 354-423 (800)
101 4b3f_X DNA-binding protein smu 97.6 0.0001 3.5E-09 88.0 9.8 67 401-478 189-256 (646)
102 3hgt_A HDA1 complex subunit 3; 97.2 0.00099 3.4E-08 71.8 10.5 121 616-743 106-236 (328)
103 2o0j_A Terminase, DNA packagin 96.5 0.029 9.9E-07 62.2 15.2 74 401-483 163-236 (385)
104 3ec2_A DNA replication protein 96.2 0.018 6.3E-07 56.2 9.9 18 415-432 37-54 (180)
105 3cpe_A Terminase, DNA packagin 96.1 0.03 1E-06 65.8 13.0 74 401-483 163-236 (592)
106 3vkw_A Replicase large subunit 95.3 0.018 6E-07 64.9 6.3 106 418-573 163-268 (446)
107 1uaa_A REP helicase, protein ( 95.3 0.022 7.6E-07 67.9 7.6 79 401-489 2-83 (673)
108 1pjr_A PCRA; DNA repair, DNA r 95.2 0.035 1.2E-06 66.9 9.1 81 400-489 10-91 (724)
109 1l8q_A Chromosomal replication 95.1 0.12 4.1E-06 55.4 12.0 17 416-432 37-53 (324)
110 2kjq_A DNAA-related protein; s 95.0 0.02 6.8E-07 54.7 4.8 41 534-575 83-124 (149)
111 2orw_A Thymidine kinase; TMTK, 94.9 0.12 4E-06 51.1 10.2 39 415-464 2-40 (184)
112 1xx6_A Thymidine kinase; NESG, 94.7 0.063 2.2E-06 53.5 7.9 38 416-464 8-45 (191)
113 2b8t_A Thymidine kinase; deoxy 94.5 0.14 4.7E-06 52.4 10.0 91 416-547 12-102 (223)
114 3te6_A Regulatory protein SIR3 94.2 0.32 1.1E-05 52.4 12.6 27 416-443 45-71 (318)
115 3u4q_A ATP-dependent helicase/ 94.1 0.064 2.2E-06 68.5 7.9 74 400-480 9-82 (1232)
116 2w58_A DNAI, primosome compone 94.1 0.32 1.1E-05 48.0 11.5 16 417-432 55-70 (202)
117 3kl4_A SRP54, signal recogniti 94.0 0.33 1.1E-05 54.6 12.5 55 533-587 178-235 (433)
118 2chg_A Replication factor C sm 93.5 0.65 2.2E-05 45.6 12.7 39 533-572 101-139 (226)
119 2j9r_A Thymidine kinase; TK1, 93.3 0.093 3.2E-06 53.2 5.8 39 416-465 28-66 (214)
120 2z4s_A Chromosomal replication 93.2 0.4 1.4E-05 54.1 11.6 44 534-577 194-239 (440)
121 2qby_B CDC6 homolog 3, cell di 93.2 0.36 1.2E-05 52.6 11.0 17 416-432 45-61 (384)
122 2v1u_A Cell division control p 93.1 0.53 1.8E-05 51.0 12.3 18 415-432 43-60 (387)
123 3u61_B DNA polymerase accessor 93.0 0.49 1.7E-05 50.5 11.6 39 534-572 105-143 (324)
124 3bos_A Putative DNA replicatio 92.7 0.14 4.8E-06 51.6 6.3 18 415-432 51-68 (242)
125 1a5t_A Delta prime, HOLB; zinc 92.5 0.2 6.8E-06 54.2 7.6 31 402-432 3-40 (334)
126 1fnn_A CDC6P, cell division co 92.5 0.39 1.3E-05 52.3 10.1 15 418-432 46-60 (389)
127 2qgz_A Helicase loader, putati 92.0 0.5 1.7E-05 50.5 9.8 17 416-432 152-168 (308)
128 3h4m_A Proteasome-activating n 91.9 0.21 7.2E-06 52.3 6.6 52 378-432 13-67 (285)
129 2zpa_A Uncharacterized protein 91.8 0.14 4.8E-06 60.4 5.5 113 401-576 175-289 (671)
130 3syl_A Protein CBBX; photosynt 91.6 0.21 7E-06 52.9 6.2 17 416-432 67-83 (309)
131 2orv_A Thymidine kinase; TP4A 91.5 0.29 1E-05 50.1 6.9 39 416-465 19-57 (234)
132 3dm5_A SRP54, signal recogniti 91.5 1.2 4.1E-05 50.0 12.5 54 534-587 182-236 (443)
133 1d2n_A N-ethylmaleimide-sensit 91.4 1.2 3.9E-05 46.3 11.7 16 417-432 65-80 (272)
134 1w4r_A Thymidine kinase; type 91.3 0.29 1E-05 48.7 6.5 38 416-464 20-57 (195)
135 1sxj_E Activator 1 40 kDa subu 91.0 1.2 4.2E-05 47.8 11.9 42 533-575 133-174 (354)
136 1jbk_A CLPB protein; beta barr 91.0 1.8 6.1E-05 41.2 11.9 17 416-432 43-59 (195)
137 3eie_A Vacuolar protein sortin 91.0 1 3.5E-05 48.2 11.0 49 378-432 14-67 (322)
138 2p65_A Hypothetical protein PF 90.9 1.5 5.2E-05 41.7 11.3 17 416-432 43-59 (187)
139 3e2i_A Thymidine kinase; Zn-bi 90.6 0.28 9.5E-06 49.7 5.6 40 415-465 27-66 (219)
140 1gm5_A RECG; helicase, replica 90.3 0.47 1.6E-05 57.4 8.3 76 637-712 417-497 (780)
141 3pfi_A Holliday junction ATP-d 90.0 1.8 6.1E-05 46.3 11.9 42 379-432 26-71 (338)
142 3cf0_A Transitional endoplasmi 90.0 0.48 1.6E-05 50.3 7.3 52 378-432 11-65 (301)
143 2qby_A CDC6 homolog 1, cell di 90.0 0.73 2.5E-05 49.8 8.9 17 416-432 45-61 (386)
144 1xwi_A SKD1 protein; VPS4B, AA 89.7 1.5 5.1E-05 47.0 10.9 49 378-432 8-61 (322)
145 1njg_A DNA polymerase III subu 89.4 5.9 0.0002 38.9 14.6 38 534-572 126-163 (250)
146 1g5t_A COB(I)alamin adenosyltr 89.4 0.83 2.9E-05 45.5 7.9 51 533-583 119-171 (196)
147 3b9p_A CG5977-PA, isoform A; A 89.3 1.9 6.6E-05 45.1 11.3 52 378-432 17-70 (297)
148 4b4t_J 26S protease regulatory 89.1 0.95 3.2E-05 50.2 8.9 52 378-432 144-198 (405)
149 1sxj_D Activator 1 41 kDa subu 89.0 1 3.4E-05 48.4 9.0 38 534-572 133-170 (353)
150 1iqp_A RFCS; clamp loader, ext 88.6 1.6 5.6E-05 46.0 10.2 39 533-572 109-147 (327)
151 2w0m_A SSO2452; RECA, SSPF, un 88.5 1.6 5.3E-05 43.5 9.5 18 415-432 22-39 (235)
152 4b4t_M 26S protease regulatory 88.5 0.47 1.6E-05 53.2 6.0 52 378-432 177-231 (434)
153 3vfd_A Spastin; ATPase, microt 88.5 2.8 9.5E-05 46.0 12.3 44 379-432 112-164 (389)
154 1jr3_A DNA polymerase III subu 88.4 5.2 0.00018 43.0 14.3 39 533-572 118-156 (373)
155 2qp9_X Vacuolar protein sortin 87.7 0.95 3.3E-05 49.3 7.8 17 416-432 84-100 (355)
156 1hqc_A RUVB; extended AAA-ATPa 87.6 3.6 0.00012 43.4 12.1 17 416-432 38-54 (324)
157 4b4t_H 26S protease regulatory 87.2 1.2 4.2E-05 50.1 8.3 52 378-432 205-259 (467)
158 2dr3_A UPF0273 protein PH0284; 87.1 1.5 5.2E-05 44.1 8.5 18 415-432 22-39 (247)
159 4b4t_L 26S protease subunit RP 86.9 0.92 3.2E-05 50.9 7.1 52 378-432 177-231 (437)
160 3oiy_A Reverse gyrase helicase 85.9 1.7 5.8E-05 47.9 8.7 76 636-711 63-145 (414)
161 1sxj_B Activator 1 37 kDa subu 85.5 1.6 5.4E-05 46.0 7.8 38 534-572 107-144 (323)
162 2r6a_A DNAB helicase, replicat 85.0 3.2 0.00011 46.7 10.5 27 415-442 202-228 (454)
163 1w5s_A Origin recognition comp 85.0 3 0.0001 45.6 10.1 17 416-432 50-68 (412)
164 2ehv_A Hypothetical protein PH 85.0 1 3.5E-05 45.6 5.8 46 533-578 134-184 (251)
165 4b4t_I 26S protease regulatory 84.3 1.5 5.3E-05 48.9 7.2 52 378-432 178-232 (437)
166 2hjv_A ATP-dependent RNA helic 84.3 3.4 0.00012 39.2 8.9 72 457-542 37-111 (163)
167 4ddu_A Reverse gyrase; topoiso 83.7 2.4 8.1E-05 53.4 9.4 76 636-712 120-203 (1104)
168 4b4t_K 26S protease regulatory 83.7 1.5 5.2E-05 49.0 6.9 52 378-432 168-222 (428)
169 1ls1_A Signal recognition part 83.5 11 0.00038 39.7 13.3 46 533-578 179-225 (295)
170 2zan_A Vacuolar protein sortin 83.5 2 6.8E-05 48.3 7.9 52 378-432 130-183 (444)
171 3k1j_A LON protease, ATP-depen 83.4 4.5 0.00015 47.3 11.2 22 411-432 55-76 (604)
172 3hu3_A Transitional endoplasmi 82.6 2.2 7.6E-05 48.6 7.9 43 535-577 298-350 (489)
173 1t6n_A Probable ATP-dependent 82.5 5 0.00017 39.7 9.7 72 637-711 82-164 (220)
174 3pvs_A Replication-associated 82.2 1.8 6.2E-05 48.7 6.9 16 417-432 51-66 (447)
175 1sxj_C Activator 1 40 kDa subu 82.2 3.7 0.00012 44.0 9.1 39 533-572 109-147 (340)
176 3hjh_A Transcription-repair-co 82.0 4.1 0.00014 46.3 9.8 89 415-521 13-116 (483)
177 1fuk_A Eukaryotic initiation f 81.6 5.4 0.00019 37.8 9.2 72 457-542 32-106 (165)
178 3ber_A Probable ATP-dependent 81.6 5.9 0.0002 40.4 10.1 84 624-711 98-192 (249)
179 1nlf_A Regulatory protein REPA 81.6 11 0.00037 39.1 12.2 20 413-432 27-46 (279)
180 2p6n_A ATP-dependent RNA helic 81.4 7.9 0.00027 37.9 10.5 70 457-540 56-128 (191)
181 1um8_A ATP-dependent CLP prote 81.0 7.5 0.00026 42.2 11.2 17 416-432 72-88 (376)
182 2fna_A Conserved hypothetical 80.8 31 0.0011 36.2 15.9 16 417-432 31-46 (357)
183 2eyq_A TRCF, transcription-rep 80.7 3 0.0001 52.7 8.8 76 636-711 651-731 (1151)
184 2rb4_A ATP-dependent RNA helic 80.3 9.4 0.00032 36.4 10.5 70 457-540 36-108 (175)
185 2q6t_A DNAB replication FORK h 80.0 3.6 0.00012 46.1 8.4 27 415-442 199-225 (444)
186 3eaq_A Heat resistant RNA depe 79.1 7 0.00024 38.9 9.4 70 457-540 33-105 (212)
187 3bh0_A DNAB-like replicative h 79.0 4.5 0.00015 43.1 8.3 53 414-478 66-118 (315)
188 2gno_A DNA polymerase III, gam 78.9 7.8 0.00027 41.1 10.1 41 533-575 81-121 (305)
189 2cvh_A DNA repair and recombin 78.7 4.8 0.00017 39.6 8.0 18 415-432 19-36 (220)
190 3bor_A Human initiation factor 78.0 4.9 0.00017 40.5 7.9 86 623-711 84-179 (237)
191 2ce7_A Cell division protein F 76.8 4.6 0.00016 45.8 8.0 49 379-432 13-65 (476)
192 1vec_A ATP-dependent RNA helic 76.2 8.5 0.00029 37.4 9.0 71 636-710 70-151 (206)
193 3e70_C DPA, signal recognition 76.1 20 0.00068 38.4 12.5 54 534-587 211-265 (328)
194 3n70_A Transport activator; si 76.1 1.6 5.4E-05 40.7 3.3 20 413-432 21-40 (145)
195 3co5_A Putative two-component 75.9 1.5 5E-05 40.9 3.0 21 412-432 23-43 (143)
196 1t5i_A C_terminal domain of A 75.1 16 0.00054 34.9 10.4 71 457-541 33-106 (172)
197 1vma_A Cell division protein F 74.8 35 0.0012 36.0 13.9 17 416-432 104-120 (306)
198 1n0w_A DNA repair protein RAD5 74.7 5.5 0.00019 39.8 7.3 18 415-432 23-40 (243)
199 2px0_A Flagellar biosynthesis 74.7 13 0.00045 39.1 10.4 18 415-432 104-121 (296)
200 4a1f_A DNAB helicase, replicat 74.7 3.9 0.00013 44.2 6.3 50 415-476 45-94 (338)
201 3cmu_A Protein RECA, recombina 74.4 5.4 0.00018 52.8 8.6 18 416-433 1427-1444(2050)
202 3fe2_A Probable ATP-dependent 74.4 13 0.00044 37.4 10.0 72 636-711 101-182 (242)
203 2jgn_A DBX, DDX3, ATP-dependen 74.4 8.9 0.00031 37.2 8.4 70 457-540 48-120 (185)
204 3pxi_A Negative regulator of g 74.2 3.7 0.00013 49.4 6.7 15 418-432 523-537 (758)
205 2yhs_A FTSY, cell division pro 73.9 9.9 0.00034 43.2 9.6 27 416-444 293-319 (503)
206 1xti_A Probable ATP-dependent 73.1 11 0.00036 40.6 9.5 73 636-711 75-158 (391)
207 2oxc_A Probable ATP-dependent 72.9 8.4 0.00029 38.5 8.1 82 624-710 79-171 (230)
208 3i5x_A ATP-dependent RNA helic 72.4 20 0.00068 41.0 12.1 75 457-542 341-418 (563)
209 3b85_A Phosphate starvation-in 72.0 4.1 0.00014 40.8 5.3 41 399-441 5-45 (208)
210 2zr9_A Protein RECA, recombina 70.9 11 0.00038 40.7 9.0 27 415-442 60-86 (349)
211 3sqw_A ATP-dependent RNA helic 70.2 24 0.00081 40.7 12.1 78 456-544 289-369 (579)
212 1oyw_A RECQ helicase, ATP-depe 69.7 6.8 0.00023 44.9 7.3 74 637-710 65-144 (523)
213 2ffh_A Protein (FFH); SRP54, s 69.2 51 0.0017 36.6 14.0 52 533-584 179-231 (425)
214 2v1x_A ATP-dependent DNA helic 69.1 7.1 0.00024 45.5 7.4 59 637-695 84-144 (591)
215 1e9r_A Conjugal transfer prote 68.9 4.1 0.00014 45.3 5.1 44 415-469 52-95 (437)
216 2i4i_A ATP-dependent RNA helic 68.6 15 0.00051 39.9 9.5 71 456-540 277-350 (417)
217 2z43_A DNA repair and recombin 68.2 7.6 0.00026 41.4 6.8 18 415-432 106-123 (324)
218 2gxq_A Heat resistant RNA depe 68.2 20 0.00069 34.6 9.5 72 636-711 71-150 (207)
219 1qde_A EIF4A, translation init 67.3 8.1 0.00028 38.2 6.4 82 624-710 69-160 (224)
220 3cf2_A TER ATPase, transitiona 67.1 4.7 0.00016 48.7 5.3 53 377-432 472-527 (806)
221 3jvv_A Twitching mobility prot 66.4 6 0.0002 43.0 5.6 19 414-432 121-139 (356)
222 3bgw_A DNAB-like replicative h 66.1 7 0.00024 43.9 6.2 27 415-442 196-222 (444)
223 1qvr_A CLPB protein; coiled co 65.8 14 0.00047 45.1 9.2 17 416-432 191-207 (854)
224 2eyu_A Twitching motility prot 65.6 3.4 0.00012 42.9 3.3 28 413-442 22-49 (261)
225 3cmw_A Protein RECA, recombina 65.3 13 0.00046 48.4 9.2 120 416-578 1431-1570(1706)
226 3i32_A Heat resistant RNA depe 64.8 13 0.00043 39.4 7.6 70 457-540 30-102 (300)
227 1xp8_A RECA protein, recombina 64.5 24 0.00083 38.4 10.0 28 415-443 73-100 (366)
228 3iuy_A Probable ATP-dependent 64.4 9.4 0.00032 37.9 6.3 72 636-711 93-173 (228)
229 1ypw_A Transitional endoplasmi 64.3 7.6 0.00026 47.0 6.5 18 415-432 237-254 (806)
230 1qvr_A CLPB protein; coiled co 63.9 15 0.0005 44.8 9.0 15 418-432 590-604 (854)
231 3hr8_A Protein RECA; alpha and 63.2 12 0.00041 40.6 7.2 27 415-442 60-86 (356)
232 1hv8_A Putative ATP-dependent 63.0 15 0.00052 38.8 8.0 71 457-541 240-313 (367)
233 3ly5_A ATP-dependent RNA helic 62.6 18 0.00062 37.0 8.2 72 636-711 125-207 (262)
234 1p9r_A General secretion pathw 62.1 6.6 0.00023 43.7 5.0 28 405-432 154-183 (418)
235 1v5w_A DMC1, meiotic recombina 62.1 15 0.00052 39.5 7.8 17 416-432 122-138 (343)
236 2pl3_A Probable ATP-dependent 61.8 14 0.00047 36.9 7.0 70 636-710 96-176 (236)
237 3fmo_B ATP-dependent RNA helic 61.7 10 0.00035 39.9 6.2 83 622-711 147-241 (300)
238 1wrb_A DJVLGB; RNA helicase, D 61.4 32 0.0011 34.5 9.8 71 637-711 100-180 (253)
239 3cmu_A Protein RECA, recombina 61.1 13 0.00045 49.2 8.1 23 413-435 1078-1100(2050)
240 2oap_1 GSPE-2, type II secreti 61.0 4.4 0.00015 46.4 3.4 39 392-432 237-276 (511)
241 2i1q_A DNA repair and recombin 60.2 8.3 0.00028 40.9 5.2 17 416-432 98-114 (322)
242 2d7d_A Uvrabc system protein B 60.2 26 0.0009 41.3 10.0 76 457-546 447-525 (661)
243 3lda_A DNA repair protein RAD5 60.0 11 0.00039 41.6 6.4 17 416-432 178-194 (400)
244 1pzn_A RAD51, DNA repair and r 60.0 18 0.0006 39.1 7.8 17 416-432 131-147 (349)
245 1wp9_A ATP-dependent RNA helic 59.9 35 0.0012 37.1 10.6 96 425-543 340-446 (494)
246 2gza_A Type IV secretion syste 59.9 4.8 0.00016 43.8 3.3 20 412-431 171-190 (361)
247 1lvg_A Guanylate kinase, GMP k 59.9 5.8 0.0002 39.0 3.6 26 415-442 3-28 (198)
248 3cf2_A TER ATPase, transitiona 59.4 16 0.00053 44.2 7.8 16 417-432 239-254 (806)
249 2xxa_A Signal recognition part 59.3 71 0.0024 35.4 12.8 16 417-432 101-116 (433)
250 3tbk_A RIG-I helicase domain; 59.1 17 0.0006 40.9 8.0 71 637-711 52-133 (555)
251 3fht_A ATP-dependent RNA helic 58.9 17 0.00059 39.1 7.7 70 457-540 268-340 (412)
252 1kgd_A CASK, peripheral plasma 58.6 5.9 0.0002 38.1 3.4 19 414-432 3-21 (180)
253 1w36_B RECB, exodeoxyribonucle 58.6 13 0.00046 46.9 7.5 63 418-480 18-81 (1180)
254 2wv9_A Flavivirin protease NS2 57.0 16 0.00053 43.3 7.2 54 456-515 411-464 (673)
255 1lv7_A FTSH; alpha/beta domain 56.7 16 0.00054 37.0 6.5 52 378-432 8-61 (257)
256 1ofh_A ATP-dependent HSL prote 56.6 21 0.00072 36.9 7.6 18 415-432 49-66 (310)
257 2j37_W Signal recognition part 56.4 86 0.0029 35.5 13.0 52 533-584 182-234 (504)
258 1c4o_A DNA nucleotide excision 56.4 29 0.001 40.9 9.5 76 457-546 441-519 (664)
259 3pey_A ATP-dependent RNA helic 56.3 20 0.00068 38.3 7.5 75 457-545 245-322 (395)
260 3hws_A ATP-dependent CLP prote 56.3 13 0.00043 40.2 5.9 18 415-432 50-67 (363)
261 2db3_A ATP-dependent RNA helic 56.2 19 0.00064 39.9 7.4 69 458-540 303-374 (434)
262 2ewv_A Twitching motility prot 55.9 5.6 0.00019 43.5 3.0 28 414-443 134-161 (372)
263 1s2m_A Putative ATP-dependent 55.5 31 0.0011 37.0 9.0 72 636-711 88-169 (400)
264 1q0u_A Bstdead; DEAD protein, 55.1 13 0.00046 36.5 5.5 83 624-710 59-155 (219)
265 2bjv_A PSP operon transcriptio 54.7 8.6 0.00029 39.3 4.1 19 414-432 27-45 (265)
266 1yks_A Genome polyprotein [con 54.4 12 0.00042 41.7 5.5 67 457-539 179-245 (440)
267 3tr0_A Guanylate kinase, GMP k 54.1 7.6 0.00026 37.7 3.4 18 415-432 6-23 (205)
268 2zts_A Putative uncharacterize 54.1 12 0.0004 37.5 4.9 18 415-432 29-46 (251)
269 2xau_A PRE-mRNA-splicing facto 53.8 26 0.00088 42.2 8.6 75 457-540 305-393 (773)
270 2pt7_A CAG-ALFA; ATPase, prote 52.8 5.7 0.0002 42.7 2.4 57 46-124 1-57 (330)
271 4a2p_A RIG-I, retinoic acid in 52.4 24 0.00081 39.9 7.7 71 637-711 55-136 (556)
272 2j0s_A ATP-dependent RNA helic 52.3 38 0.0013 36.5 9.1 72 636-711 104-185 (410)
273 3nbx_X ATPase RAVA; AAA+ ATPas 51.9 13 0.00045 42.3 5.3 29 404-432 29-57 (500)
274 4a2q_A RIG-I, retinoic acid in 51.7 28 0.00095 41.9 8.5 71 637-711 296-377 (797)
275 2v6i_A RNA helicase; membrane, 51.6 18 0.00062 40.1 6.4 53 457-515 173-225 (431)
276 4ag6_A VIRB4 ATPase, type IV s 51.3 9.4 0.00032 41.7 3.9 43 414-467 33-75 (392)
277 1z6g_A Guanylate kinase; struc 51.1 10 0.00034 37.9 3.7 20 413-432 20-39 (218)
278 1tue_A Replication protein E1; 51.1 16 0.00056 36.5 5.2 43 388-432 28-74 (212)
279 1j8m_F SRP54, signal recogniti 50.9 1.6E+02 0.0053 30.7 13.2 17 416-432 98-114 (297)
280 3vaa_A Shikimate kinase, SK; s 50.9 9.9 0.00034 37.1 3.6 18 415-432 24-41 (199)
281 1u0j_A DNA replication protein 50.8 24 0.00083 36.6 6.7 42 389-433 74-121 (267)
282 3gk5_A Uncharacterized rhodane 50.8 20 0.00068 31.3 5.3 39 635-673 53-91 (108)
283 3dkp_A Probable ATP-dependent 50.6 14 0.00048 37.0 4.8 73 636-711 97-181 (245)
284 3uk6_A RUVB-like 2; hexameric 50.3 19 0.00065 38.5 6.1 17 416-432 70-86 (368)
285 2jlq_A Serine protease subunit 50.2 23 0.00079 39.5 7.0 53 457-515 190-242 (451)
286 3cmw_A Protein RECA, recombina 50.0 26 0.00088 45.8 8.0 20 415-434 33-52 (1706)
287 3ney_A 55 kDa erythrocyte memb 49.9 9.4 0.00032 37.8 3.2 19 414-432 17-35 (197)
288 1ixz_A ATP-dependent metallopr 49.5 7.4 0.00025 39.5 2.5 52 378-432 12-65 (254)
289 2r44_A Uncharacterized protein 49.3 6.9 0.00024 41.5 2.3 22 411-432 41-62 (331)
290 1fuu_A Yeast initiation factor 49.3 39 0.0013 36.0 8.5 85 622-711 74-168 (394)
291 1znw_A Guanylate kinase, GMP k 48.5 11 0.00037 37.1 3.5 21 412-432 16-36 (207)
292 3a00_A Guanylate kinase, GMP k 48.4 11 0.00039 36.2 3.6 16 417-432 2-17 (186)
293 3eiq_A Eukaryotic initiation f 48.4 49 0.0017 35.5 9.2 87 622-711 93-189 (414)
294 3c8u_A Fructokinase; YP_612366 47.9 11 0.00037 37.1 3.4 26 416-443 22-47 (208)
295 1q57_A DNA primase/helicase; d 47.9 21 0.0007 40.5 6.1 26 414-440 240-265 (503)
296 3iij_A Coilin-interacting nucl 47.8 10 0.00034 36.2 3.0 19 414-432 9-27 (180)
297 1ojl_A Transcriptional regulat 47.3 9.4 0.00032 40.3 3.0 19 414-432 23-41 (304)
298 2yjt_D ATP-dependent RNA helic 52.9 4 0.00014 39.0 0.0 70 457-540 32-104 (170)
299 2x8a_A Nuclear valosin-contain 46.9 5.5 0.00019 41.5 1.0 52 378-432 6-60 (274)
300 4f4c_A Multidrug resistance pr 46.9 21 0.00072 45.7 6.6 41 532-572 1233-1273(1321)
301 2j41_A Guanylate kinase; GMP, 46.9 9.5 0.00032 37.0 2.7 19 414-432 4-22 (207)
302 3tau_A Guanylate kinase, GMP k 46.8 11 0.00036 37.3 3.1 18 415-432 7-24 (208)
303 3foj_A Uncharacterized protein 46.7 12 0.00042 32.1 3.1 38 636-673 55-92 (100)
304 3eme_A Rhodanese-like domain p 46.7 12 0.00042 32.2 3.2 38 636-673 55-92 (103)
305 3iwh_A Rhodanese-like domain p 46.7 12 0.00041 32.8 3.1 37 636-672 55-91 (103)
306 1ex7_A Guanylate kinase; subst 46.7 12 0.00042 36.6 3.5 15 417-431 2-16 (186)
307 2ius_A DNA translocase FTSK; n 46.6 19 0.00064 41.1 5.4 18 415-432 166-183 (512)
308 2qor_A Guanylate kinase; phosp 46.4 8.4 0.00029 37.8 2.3 20 413-432 9-28 (204)
309 3exa_A TRNA delta(2)-isopenten 46.3 7.8 0.00027 41.5 2.1 16 417-432 4-19 (322)
310 1qhx_A CPT, protein (chloramph 46.1 8.5 0.00029 36.5 2.2 17 416-432 3-19 (178)
311 3trf_A Shikimate kinase, SK; a 45.9 8.9 0.0003 36.6 2.3 17 416-432 5-21 (185)
312 1kag_A SKI, shikimate kinase I 45.7 12 0.00042 35.1 3.3 17 416-432 4-20 (173)
313 1tf7_A KAIC; homohexamer, hexa 45.6 46 0.0016 37.8 8.7 20 413-432 278-297 (525)
314 1tq4_A IIGP1, interferon-induc 45.5 30 0.001 38.3 6.8 55 533-587 183-248 (413)
315 3a8t_A Adenylate isopentenyltr 45.1 10 0.00036 40.8 2.9 17 416-432 40-56 (339)
316 1s96_A Guanylate kinase, GMP k 45.1 13 0.00044 37.3 3.4 20 413-432 13-32 (219)
317 3nwn_A Kinesin-like protein KI 44.9 13 0.00046 40.3 3.7 25 408-432 95-121 (359)
318 1f2t_A RAD50 ABC-ATPase; DNA d 44.8 14 0.00047 34.6 3.4 23 418-442 25-47 (149)
319 3lw7_A Adenylate kinase relate 44.8 9.1 0.00031 35.7 2.2 15 418-432 3-17 (179)
320 3u4q_B ATP-dependent helicase/ 44.7 16 0.00054 46.2 4.9 49 621-669 324-375 (1166)
321 3foz_A TRNA delta(2)-isopenten 44.7 9.2 0.00032 40.8 2.3 15 418-432 12-26 (316)
322 1wv9_A Rhodanese homolog TT165 44.6 19 0.00063 30.5 3.9 36 638-673 54-89 (94)
323 1zp6_A Hypothetical protein AT 44.6 6.9 0.00024 37.6 1.3 20 413-432 6-25 (191)
324 3kta_A Chromosome segregation 44.0 11 0.00038 35.9 2.7 23 418-442 28-50 (182)
325 2ze6_A Isopentenyl transferase 43.7 9.3 0.00032 39.1 2.2 15 418-432 3-17 (253)
326 1bg2_A Kinesin; motor protein, 43.4 15 0.00053 39.3 3.9 25 408-432 68-94 (325)
327 2qmh_A HPR kinase/phosphorylas 43.1 9.7 0.00033 38.0 2.1 17 416-432 34-50 (205)
328 4eun_A Thermoresistant glucoki 43.0 16 0.00053 35.7 3.6 18 415-432 28-45 (200)
329 1rj9_A FTSY, signal recognitio 42.9 21 0.00073 37.7 4.9 27 416-444 102-128 (304)
330 2i3b_A HCR-ntpase, human cance 42.7 18 0.0006 35.4 3.9 41 532-575 103-145 (189)
331 1iy2_A ATP-dependent metallopr 42.7 10 0.00034 39.2 2.3 52 378-432 36-89 (278)
332 2v9p_A Replication protein E1; 42.6 13 0.00046 39.4 3.2 26 415-442 125-150 (305)
333 2qz4_A Paraplegin; AAA+, SPG7, 42.3 10 0.00036 38.3 2.3 17 416-432 39-55 (262)
334 2iut_A DNA translocase FTSK; n 42.0 24 0.00083 40.7 5.4 26 416-442 214-239 (574)
335 1kht_A Adenylate kinase; phosp 42.0 17 0.00058 34.6 3.6 17 416-432 3-19 (192)
336 3b6e_A Interferon-induced heli 41.5 41 0.0014 32.4 6.5 56 636-695 81-140 (216)
337 1v8k_A Kinesin-like protein KI 41.5 16 0.00053 40.5 3.6 25 408-432 145-171 (410)
338 2vvg_A Kinesin-2; motor protei 41.3 17 0.00059 39.3 3.9 24 409-432 81-106 (350)
339 2y65_A Kinesin, kinesin heavy 41.2 17 0.00059 39.5 3.9 24 409-432 76-101 (365)
340 4etp_A Kinesin-like protein KA 41.2 18 0.00061 40.0 4.0 25 409-433 132-158 (403)
341 2h58_A Kinesin-like protein KI 41.2 18 0.0006 38.9 3.9 25 408-432 71-97 (330)
342 3t0q_A AGR253WP; kinesin, alph 41.1 16 0.00056 39.5 3.7 26 408-433 76-103 (349)
343 1goj_A Kinesin, kinesin heavy 40.9 18 0.0006 39.3 3.9 24 409-432 72-97 (355)
344 3b9q_A Chloroplast SRP recepto 40.9 21 0.00072 37.7 4.4 28 415-444 99-126 (302)
345 3dc4_A Kinesin-like protein NO 40.7 15 0.00052 39.7 3.3 24 409-432 86-111 (344)
346 3b6u_A Kinesin-like protein KI 40.6 17 0.00058 39.7 3.7 25 408-432 92-118 (372)
347 3d8b_A Fidgetin-like protein 1 40.6 27 0.00091 37.6 5.3 51 379-432 81-133 (357)
348 3lre_A Kinesin-like protein KI 40.5 18 0.00061 39.3 3.9 24 409-432 97-122 (355)
349 4a14_A Kinesin, kinesin-like p 40.5 18 0.00062 39.0 3.9 24 409-432 75-100 (344)
350 4gp7_A Metallophosphoesterase; 40.4 8.9 0.0003 36.6 1.3 18 415-432 8-25 (171)
351 1m7g_A Adenylylsulfate kinase; 40.4 25 0.00085 34.5 4.7 30 402-432 12-41 (211)
352 2zfi_A Kinesin-like protein KI 40.4 18 0.00062 39.4 3.9 25 408-432 80-106 (366)
353 1t5c_A CENP-E protein, centrom 40.3 17 0.00059 39.3 3.7 24 409-432 69-94 (349)
354 1y63_A LMAJ004144AAA protein; 40.3 12 0.00041 36.0 2.2 18 415-432 9-26 (184)
355 1knq_A Gluconate kinase; ALFA/ 40.2 16 0.00055 34.5 3.1 17 416-432 8-24 (175)
356 3hix_A ALR3790 protein; rhodan 40.0 21 0.00073 31.0 3.7 38 636-673 51-89 (106)
357 2c9o_A RUVB-like 1; hexameric 40.0 21 0.00073 39.8 4.6 42 379-432 34-79 (456)
358 3rc3_A ATP-dependent RNA helic 39.9 41 0.0014 39.7 7.2 74 458-546 323-401 (677)
359 1ye8_A Protein THEP1, hypothet 39.8 17 0.0006 35.0 3.3 29 533-561 98-128 (178)
360 3gbj_A KIF13B protein; kinesin 39.8 18 0.0006 39.3 3.7 25 408-432 83-109 (354)
361 2nr8_A Kinesin-like protein KI 39.8 18 0.00061 39.3 3.7 25 408-432 94-120 (358)
362 3io5_A Recombination and repai 39.8 34 0.0011 36.7 5.7 41 418-467 30-70 (333)
363 4akg_A Glutathione S-transfera 39.5 26 0.00091 47.9 6.0 48 386-434 890-941 (2695)
364 3g5j_A Putative ATP/GTP bindin 39.4 26 0.00087 31.4 4.3 37 638-674 90-127 (134)
365 3nwj_A ATSK2; P loop, shikimat 39.3 21 0.00073 36.6 4.1 20 413-432 45-64 (250)
366 3o8b_A HCV NS3 protease/helica 39.2 43 0.0015 39.5 7.0 51 456-515 397-447 (666)
367 1f9v_A Kinesin-like protein KA 39.2 17 0.00056 39.4 3.3 25 409-433 76-102 (347)
368 1x88_A Kinesin-like protein KI 39.0 17 0.00058 39.5 3.4 25 408-432 79-105 (359)
369 1tq1_A AT5G66040, senescence-a 38.7 30 0.001 31.2 4.6 38 636-673 81-119 (129)
370 3tif_A Uncharacterized ABC tra 38.5 14 0.00047 37.5 2.4 17 415-431 30-46 (235)
371 3uie_A Adenylyl-sulfate kinase 38.5 17 0.00059 35.3 3.1 30 402-432 12-41 (200)
372 2heh_A KIF2C protein; kinesin, 38.4 19 0.00064 39.6 3.6 25 409-433 126-152 (387)
373 3vkg_A Dynein heavy chain, cyt 38.1 39 0.0014 46.8 7.3 54 386-442 873-930 (3245)
374 1gku_B Reverse gyrase, TOP-RG; 38.0 31 0.0011 43.0 6.0 74 636-711 98-181 (1054)
375 3asz_A Uridine kinase; cytidin 37.9 17 0.00058 35.5 2.9 25 416-442 6-30 (211)
376 3kb2_A SPBC2 prophage-derived 37.8 20 0.00068 33.4 3.3 15 418-432 3-17 (173)
377 3u06_A Protein claret segregat 37.8 21 0.00071 39.6 3.9 25 408-432 129-155 (412)
378 3crm_A TRNA delta(2)-isopenten 37.6 16 0.00055 39.1 2.8 15 418-432 7-21 (323)
379 1ly1_A Polynucleotide kinase; 37.5 14 0.00047 34.8 2.2 15 418-432 4-18 (181)
380 1gmx_A GLPE protein; transfera 37.4 27 0.00093 30.2 4.0 40 635-674 56-96 (108)
381 2wbe_C Bipolar kinesin KRP-130 37.3 18 0.00062 39.5 3.3 25 408-432 91-117 (373)
382 3lnc_A Guanylate kinase, GMP k 37.1 12 0.0004 37.5 1.6 19 414-432 25-43 (231)
383 2owm_A Nckin3-434, related to 36.7 22 0.00075 39.8 3.9 25 408-432 127-153 (443)
384 3flh_A Uncharacterized protein 36.6 40 0.0014 30.1 5.0 38 636-673 70-109 (124)
385 3cob_A Kinesin heavy chain-lik 36.6 18 0.00061 39.5 3.0 24 409-432 71-96 (369)
386 1in4_A RUVB, holliday junction 36.5 21 0.00072 38.0 3.7 16 417-432 52-67 (334)
387 3auy_A DNA double-strand break 36.5 18 0.00063 39.2 3.2 22 419-442 28-49 (371)
388 3d3q_A TRNA delta(2)-isopenten 36.2 15 0.00051 39.6 2.4 15 418-432 9-23 (340)
389 3eph_A TRNA isopentenyltransfe 36.1 19 0.00064 39.8 3.1 15 418-432 4-18 (409)
390 3bfn_A Kinesin-like protein KI 35.9 19 0.00064 39.6 3.1 24 409-432 90-115 (388)
391 4a2w_A RIG-I, retinoic acid in 35.7 40 0.0014 41.4 6.4 71 637-711 296-377 (936)
392 3cm0_A Adenylate kinase; ATP-b 35.7 12 0.00041 35.7 1.4 18 415-432 3-20 (186)
393 2z83_A Helicase/nucleoside tri 35.6 38 0.0013 37.8 5.7 53 457-515 192-244 (459)
394 3qks_A DNA double-strand break 35.5 22 0.00076 34.9 3.4 25 418-444 25-49 (203)
395 2og2_A Putative signal recogni 35.5 28 0.00095 37.8 4.4 27 416-444 157-183 (359)
396 3t15_A Ribulose bisphosphate c 35.5 20 0.00068 37.5 3.2 16 417-432 37-52 (293)
397 1nij_A Hypothetical protein YJ 35.3 29 0.00098 36.8 4.4 15 418-432 6-20 (318)
398 4h1g_A Maltose binding protein 35.2 35 0.0012 40.6 5.6 25 408-432 453-479 (715)
399 2chq_A Replication factor C sm 35.2 49 0.0017 34.1 6.2 41 379-432 14-54 (319)
400 2l82_A Designed protein OR32; 35.0 91 0.0031 27.4 6.6 51 640-690 5-55 (162)
401 1ry6_A Internal kinesin; kines 35.0 20 0.00069 38.9 3.2 18 415-432 82-101 (360)
402 2rep_A Kinesin-like protein KI 34.9 23 0.00078 38.7 3.6 24 409-432 107-132 (376)
403 2ykg_A Probable ATP-dependent 34.6 61 0.0021 37.9 7.6 70 638-711 62-142 (696)
404 1htw_A HI0065; nucleotide-bind 34.6 17 0.00058 34.4 2.2 27 414-442 31-57 (158)
405 4f4c_A Multidrug resistance pr 34.5 28 0.00096 44.5 4.9 40 532-571 570-609 (1321)
406 2cbz_A Multidrug resistance-as 34.3 18 0.0006 36.7 2.4 27 533-559 144-170 (237)
407 1g8p_A Magnesium-chelatase 38 34.1 20 0.00068 37.9 3.0 17 416-432 45-61 (350)
408 1qxn_A SUD, sulfide dehydrogen 34.1 32 0.0011 31.4 4.0 39 635-673 80-119 (137)
409 3qf7_A RAD50; ABC-ATPase, ATPa 34.1 22 0.00076 38.5 3.4 16 418-433 25-40 (365)
410 2hhg_A Hypothetical protein RP 34.0 25 0.00086 31.9 3.3 38 636-673 85-123 (139)
411 2f1r_A Molybdopterin-guanine d 33.6 15 0.00051 35.3 1.7 24 418-443 4-27 (171)
412 3t61_A Gluconokinase; PSI-biol 33.5 25 0.00086 34.0 3.4 16 417-432 19-34 (202)
413 2fsx_A RV0390, COG0607: rhodan 33.2 31 0.001 31.9 3.8 37 636-672 79-116 (148)
414 1tev_A UMP-CMP kinase; ploop, 33.1 16 0.00054 34.9 1.8 17 416-432 3-19 (196)
415 1sxj_A Activator 1 95 kDa subu 32.9 56 0.0019 37.0 6.6 40 534-575 148-189 (516)
416 2bdt_A BH3686; alpha-beta prot 32.9 18 0.00062 34.6 2.2 15 418-432 4-18 (189)
417 4fcw_A Chaperone protein CLPB; 32.9 24 0.00082 36.6 3.3 16 417-432 48-63 (311)
418 1sgw_A Putative ABC transporte 32.8 21 0.00071 35.7 2.6 18 414-431 33-50 (214)
419 2oca_A DAR protein, ATP-depend 32.7 1E+02 0.0035 34.4 8.8 76 457-545 349-427 (510)
420 1tf5_A Preprotein translocase 32.7 75 0.0026 38.3 7.8 68 637-710 124-208 (844)
421 2fsf_A Preprotein translocase 32.7 65 0.0022 38.9 7.2 68 637-710 115-199 (853)
422 2v54_A DTMP kinase, thymidylat 32.3 17 0.00057 35.2 1.8 18 415-432 3-20 (204)
423 2c95_A Adenylate kinase 1; tra 32.2 20 0.00069 34.3 2.4 19 414-432 7-25 (196)
424 1cke_A CK, MSSA, protein (cyti 32.2 27 0.00091 34.4 3.4 16 417-432 6-21 (227)
425 2r62_A Cell division protease 32.1 11 0.00038 38.4 0.5 17 416-432 44-60 (268)
426 2ghi_A Transport protein; mult 32.1 20 0.00068 36.9 2.4 18 414-431 44-61 (260)
427 2jtq_A Phage shock protein E; 31.8 41 0.0014 27.6 4.0 37 635-672 39-76 (85)
428 2pze_A Cystic fibrosis transme 31.8 20 0.00068 36.1 2.3 17 415-431 33-49 (229)
429 2whx_A Serine protease/ntpase/ 31.8 56 0.0019 38.1 6.5 53 457-515 357-409 (618)
430 2k0z_A Uncharacterized protein 31.8 43 0.0015 29.1 4.3 39 635-673 54-92 (110)
431 3gfo_A Cobalt import ATP-bindi 31.7 19 0.00067 37.4 2.3 17 415-431 33-49 (275)
432 3d1p_A Putative thiosulfate su 31.7 29 0.001 31.6 3.3 38 636-673 90-128 (139)
433 2ff7_A Alpha-hemolysin translo 31.6 20 0.00069 36.6 2.4 18 414-431 33-50 (247)
434 3nhv_A BH2092 protein; alpha-b 31.5 33 0.0011 31.7 3.7 38 636-673 71-110 (144)
435 2jaq_A Deoxyguanosine kinase; 31.5 28 0.00097 33.3 3.4 15 418-432 2-16 (205)
436 2pez_A Bifunctional 3'-phospho 31.5 27 0.00091 33.1 3.1 18 415-432 4-21 (179)
437 2pcj_A ABC transporter, lipopr 31.0 20 0.00068 36.0 2.2 17 415-431 29-45 (224)
438 4dzz_A Plasmid partitioning pr 30.8 1.2E+02 0.0039 28.9 7.8 32 508-545 55-86 (206)
439 1nks_A Adenylate kinase; therm 30.8 30 0.001 32.8 3.3 15 418-432 3-17 (194)
440 1g6h_A High-affinity branched- 30.7 21 0.00073 36.6 2.4 18 414-431 31-48 (257)
441 2rhm_A Putative kinase; P-loop 30.7 20 0.00067 34.2 2.0 17 416-432 5-21 (193)
442 4a74_A DNA repair and recombin 30.6 18 0.00063 35.5 1.8 18 415-432 24-41 (231)
443 3tqc_A Pantothenate kinase; bi 30.5 43 0.0015 35.7 4.8 23 419-443 95-117 (321)
444 4g1u_C Hemin import ATP-bindin 30.4 21 0.00073 36.8 2.3 17 415-431 36-52 (266)
445 1gvn_B Zeta; postsegregational 30.4 21 0.00071 37.3 2.3 16 417-432 34-49 (287)
446 1mv5_A LMRA, multidrug resista 30.3 19 0.00065 36.6 1.9 17 415-431 27-43 (243)
447 4anj_A Unconventional myosin-V 30.2 44 0.0015 41.5 5.4 69 374-443 93-170 (1052)
448 3aez_A Pantothenate kinase; tr 30.1 28 0.00096 36.9 3.2 26 416-443 90-115 (312)
449 1b0u_A Histidine permease; ABC 30.1 22 0.00077 36.6 2.4 40 533-572 170-209 (262)
450 1u94_A RECA protein, recombina 30.1 36 0.0012 36.8 4.1 27 415-442 62-88 (356)
451 1g41_A Heat shock protein HSLU 30.0 76 0.0026 35.4 6.9 17 416-432 50-66 (444)
452 1ji0_A ABC transporter; ATP bi 29.8 23 0.00078 35.9 2.4 17 415-431 31-47 (240)
453 1z5z_A Helicase of the SNF2/RA 29.8 2.2E+02 0.0074 29.1 10.0 94 424-541 92-190 (271)
454 3pxg_A Negative regulator of g 29.7 30 0.001 38.8 3.6 18 415-432 200-217 (468)
455 1odf_A YGR205W, hypothetical 3 29.6 32 0.0011 36.0 3.5 15 418-432 33-47 (290)
456 1zuh_A Shikimate kinase; alpha 29.6 25 0.00085 32.9 2.5 16 417-432 8-23 (168)
457 3ilm_A ALR3790 protein; rhodan 29.5 35 0.0012 31.4 3.4 38 636-673 55-93 (141)
458 2yvu_A Probable adenylyl-sulfa 29.5 31 0.0011 32.8 3.3 17 416-432 13-29 (186)
459 1zd8_A GTP:AMP phosphotransfer 29.4 22 0.00074 35.3 2.1 17 416-432 7-23 (227)
460 2plr_A DTMP kinase, probable t 29.3 29 0.001 33.4 3.1 18 415-432 3-20 (213)
461 2zu0_C Probable ATP-dependent 29.1 24 0.00082 36.5 2.4 17 415-431 45-61 (267)
462 1xjc_A MOBB protein homolog; s 29.1 44 0.0015 32.1 4.1 15 418-432 6-20 (169)
463 1vee_A Proline-rich protein fa 28.8 37 0.0013 30.8 3.5 37 636-672 73-110 (134)
464 3nh6_A ATP-binding cassette SU 28.8 18 0.00062 38.3 1.4 17 415-431 79-95 (306)
465 2olj_A Amino acid ABC transpor 28.8 24 0.00084 36.4 2.4 17 415-431 49-65 (263)
466 3fb4_A Adenylate kinase; psych 28.8 23 0.00079 34.6 2.2 15 418-432 2-16 (216)
467 1vpl_A ABC transporter, ATP-bi 28.7 25 0.00084 36.2 2.4 40 533-572 163-202 (256)
468 4gl2_A Interferon-induced heli 28.7 21 0.00071 42.0 2.1 70 637-710 56-141 (699)
469 2ixe_A Antigen peptide transpo 28.7 25 0.00084 36.5 2.4 41 532-572 172-213 (271)
470 2qt1_A Nicotinamide riboside k 28.6 16 0.00054 35.7 0.9 20 413-432 18-37 (207)
471 2d2e_A SUFC protein; ABC-ATPas 28.5 25 0.00084 35.9 2.4 38 535-572 162-199 (250)
472 2iyv_A Shikimate kinase, SK; t 28.4 28 0.00095 33.1 2.6 16 417-432 3-18 (184)
473 3f9v_A Minichromosome maintena 28.3 25 0.00087 40.8 2.7 15 418-432 329-343 (595)
474 3h1t_A Type I site-specific re 28.3 1E+02 0.0035 35.2 8.0 80 456-544 440-527 (590)
475 2yz2_A Putative ABC transporte 28.3 25 0.00086 36.2 2.4 17 415-431 32-48 (266)
476 1cr0_A DNA primase/helicase; R 28.1 32 0.0011 35.7 3.2 19 414-432 33-51 (296)
477 2qi9_C Vitamin B12 import ATP- 28.0 25 0.00087 35.9 2.3 17 415-431 25-41 (249)
478 2bwj_A Adenylate kinase 5; pho 27.9 22 0.00076 34.0 1.8 17 416-432 12-28 (199)
479 1qf9_A UMP/CMP kinase, protein 27.9 24 0.00081 33.5 2.0 15 418-432 8-22 (194)
480 1e6c_A Shikimate kinase; phosp 27.8 27 0.00094 32.5 2.4 16 417-432 3-18 (173)
481 2ihy_A ABC transporter, ATP-bi 27.8 25 0.00087 36.6 2.3 17 415-431 46-62 (279)
482 2nq2_C Hypothetical ABC transp 27.6 25 0.00087 35.9 2.3 40 533-572 145-185 (253)
483 2fz4_A DNA repair protein RAD2 27.6 1E+02 0.0034 30.8 6.8 46 637-695 133-179 (237)
484 1via_A Shikimate kinase; struc 27.5 34 0.0012 32.2 3.1 15 418-432 6-20 (175)
485 3dmn_A Putative DNA helicase; 27.4 1.6E+02 0.0055 27.8 7.9 80 618-714 44-123 (174)
486 3dl0_A Adenylate kinase; phosp 27.3 26 0.00087 34.4 2.2 15 418-432 2-16 (216)
487 2r2a_A Uncharacterized protein 27.3 35 0.0012 33.6 3.2 15 418-432 7-21 (199)
488 1nkt_A Preprotein translocase 27.2 94 0.0032 37.8 7.3 68 637-710 152-236 (922)
489 2cdn_A Adenylate kinase; phosp 27.1 23 0.00078 34.3 1.8 17 416-432 20-36 (201)
490 3ipz_A Monothiol glutaredoxin- 27.1 2E+02 0.0068 24.8 7.9 45 637-681 17-67 (109)
491 3m6a_A ATP-dependent protease 26.9 35 0.0012 39.1 3.5 18 415-432 107-124 (543)
492 1zu4_A FTSY; GTPase, signal re 26.8 49 0.0017 35.1 4.5 17 416-432 105-121 (320)
493 2z0m_A 337AA long hypothetical 26.8 71 0.0024 33.0 5.7 70 637-711 56-135 (337)
494 1rz3_A Hypothetical protein rb 26.7 38 0.0013 32.9 3.3 17 416-432 22-38 (201)
495 2if2_A Dephospho-COA kinase; a 26.6 25 0.00087 34.0 2.0 15 418-432 3-17 (204)
496 1ukz_A Uridylate kinase; trans 26.6 27 0.00092 33.7 2.2 15 418-432 17-31 (203)
497 3ice_A Transcription terminati 26.5 78 0.0027 34.8 5.9 26 407-432 162-190 (422)
498 1aky_A Adenylate kinase; ATP:A 26.4 28 0.00095 34.3 2.3 17 416-432 4-20 (220)
499 1jjv_A Dephospho-COA kinase; P 26.4 27 0.00093 33.9 2.2 14 419-432 5-18 (206)
500 2r2a_A Uncharacterized protein 26.3 35 0.0012 33.6 3.0 39 535-574 88-132 (199)
No 1
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.8e-58 Score=544.02 Aligned_cols=454 Identities=31% Similarity=0.477 Sum_probs=359.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcC
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~P 463 (848)
+++.++++|..+||..|+|+|.++|+.++ .++++|++||||+|||++|++|+++.+....... ..++++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc----cCCCeEEEEcc
Confidence 99999999999999999999999999999 7889999999999999999999999998764321 23457999999
Q ss_pred cHHHHHHHHHHHHHHhhc---CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEE
Q 003100 464 TRELASQIAAEAIALLKN---HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (848)
Q Consensus 464 TreLa~Qi~~~l~~l~~~---~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVI 540 (848)
|++||.|+++.+.+++.. ...+.+..++|+.........+...+++|+|+||++|++++.... ...+..+++|||
T Consensus 104 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lVi 181 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVL 181 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--ccccccCCEEEE
Confidence 999999999999998743 345678889999888877777766678999999999999987642 234678999999
Q ss_pred ecccccccccchhhHHHHHHhcCc-------cceeEEEeccCChHHHHHHHHHhccceEE-EeecCCCcccccceeeccc
Q 003100 541 DEADHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKEVRRISQLVLKREHTY-IDTVGLGSVETPVKIKQSC 612 (848)
Q Consensus 541 DEAH~ll~~gf~~~l~~Il~~l~~-------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~-i~~~~~~~~~~~~~v~q~~ 612 (848)
||||++++++|...+..|+..++. .+|+++||||+++.+..++..++..+..+ +.............+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999887643 67999999999999998888887764433 3322222233334444444
Q ss_pred ccCCh-h-hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---ccceeeecCCcchhhHHHHHHHHhcCC
Q 003100 613 LVAPH-E-LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASK 687 (848)
Q Consensus 613 ~~~~~-~-~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~ls~~~R~~i~~~F~~G~ 687 (848)
..... . .....+..++.......++.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC
Confidence 44432 2 222333333332222346789999999999999999999987 899999999999999999999999999
Q ss_pred ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCCC
Q 003100 688 RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLPH 764 (848)
Q Consensus 688 ~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~~ 764 (848)
..|||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.|..+++.+++ ..+.......
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 421 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE 421 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEEC
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888864 3444333333
Q ss_pred CChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-Cccc-HHHHHHHHHHHcCCCC-CCCCCHHHHHhcCCCCC
Q 003100 765 LNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGR-DKTT-LVELANKFAQSIGLQR-PPPLFRKTALKMGLKDI 841 (848)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~e~~~~s~l~~y~~~~~~~~-~~~~-~~~l~~~la~s~GL~~-~P~v~~~~~~k~gl~~~ 841 (848)
........+...+..... .....+.+|+.||.......+ ...+ +..+++.++..++.+. .|.+.++++.+|||++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~ 500 (579)
T 3sqw_A 422 PSEEIKSEVLEAVTEEPE-DISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRS 500 (579)
T ss_dssp CCHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCTTCCEEECHHHHHHHTCTTC
T ss_pred ccHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCCCCCccchhHHHhcCCCCC
Confidence 344444443333322112 234567899999988754332 3233 4677778888778875 46689999999999999
Q ss_pred CCcee
Q 003100 842 PGIRL 846 (848)
Q Consensus 842 pgl~i 846 (848)
||+.+
T Consensus 501 ~~~~~ 505 (579)
T 3sqw_A 501 PIGKA 505 (579)
T ss_dssp HHHHH
T ss_pred CCcee
Confidence 99854
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.8e-57 Score=514.86 Aligned_cols=361 Identities=28% Similarity=0.483 Sum_probs=313.5
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+..+|+++++++.++++|.++||..|||+|+++||.+++|+|++++|+||||||++|++|++++++..... ....++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~ 130 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRP 130 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCC
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999999875432 122356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+|||+||.|+++++.+++... ++.+.+++||.....+...+. .+++|+|+||++|++++.+. ...+.+++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~---~~~l~~~~ 205 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECIT-RGCHVVIATPGRLLDFVDRT---FITFEDTR 205 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT---SCCCTTCC
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhh-cCCCEEEEChHHHHHHHHhC---CcccccCC
Confidence 89999999999999999999987653 688889999988776555554 46899999999999999876 35678999
Q ss_pred EEEEecccccccccchhhHHHHHHhc--CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCL--PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV 614 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l--~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~ 614 (848)
+|||||||++++++|...+..|+..+ ++.+|+++||||++..+..++..++..+ ..+..... ......+.+.+..
T Consensus 206 ~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~-~~i~~~~~--~~~~~~i~~~~~~ 282 (434)
T 2db3_A 206 FVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY-VFVAIGIV--GGACSDVKQTIYE 282 (434)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC-EEEEESST--TCCCTTEEEEEEE
T ss_pred eEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCC-EEEEeccc--cccccccceEEEE
Confidence 99999999999999999999999875 6789999999999999999998888743 33332211 1234557777777
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
+....+...+..++... ..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||
T Consensus 283 ~~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 283 VNKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp CCGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred eCcHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 88888888888888764 2359999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhc
Q 003100 695 DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLK 753 (848)
Q Consensus 695 dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~ 753 (848)
+++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++. +..++..|.
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999964 445554443
No 3
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.7e-57 Score=531.96 Aligned_cols=454 Identities=31% Similarity=0.470 Sum_probs=352.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEc
Q 003100 385 GISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (848)
Q Consensus 385 ~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~ 462 (848)
.+++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+....... ..++++|||+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lil~ 153 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVA 153 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc----cCCeeEEEEc
Confidence 399999999999999999999999999999 6789999999999999999999999998765321 2245799999
Q ss_pred CcHHHHHHHHHHHHHHhhc---CCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 463 PTRELASQIAAEAIALLKN---HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 463 PTreLa~Qi~~~l~~l~~~---~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||++||.|+++.+.+++.. ...+.+..++|+.........+...+++|+|+||++|++++.+.. ...+..+++||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV 231 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKV 231 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEE
Confidence 9999999999999998653 235668889999888777777766678999999999999987642 23467899999
Q ss_pred EecccccccccchhhHHHHHHhcCc-------cceeEEEeccCChHHHHHHHHHhccceEE-EeecCCCcccccceeecc
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKEVRRISQLVLKREHTY-IDTVGLGSVETPVKIKQS 611 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~~-------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~-i~~~~~~~~~~~~~v~q~ 611 (848)
|||||++++++|...+..|+..++. .+|+++||||+++.+..++..++..+..+ +.............+.+.
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 9999999999999999999877643 67999999999999998888887754433 332222222333344444
Q ss_pred cccCCh-hhHH-HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---ccceeeecCCcchhhHHHHHHHHhcC
Q 003100 612 CLVAPH-ELHF-QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 612 ~~~~~~-~~k~-~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~ls~~~R~~i~~~F~~G 686 (848)
+..... ..+. ..+..+.........+.++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC
Confidence 444332 2222 233333332222356789999999999999999999987 88999999999999999999999999
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCC
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLP 763 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~ 763 (848)
+..|||||+++++|||+|+|++||+|++|.++.+|+||+|||||.|+.|.|++|+++.|..+++.|++ ..+......
T Consensus 392 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 471 (563)
T 3i5x_A 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 471 (563)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred CCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888864 344433322
Q ss_pred CCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-Ccc-cHHHHHHHHHHHcCCCCC-CCCCHHHHHhcCCCC
Q 003100 764 HLNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGR-DKT-TLVELANKFAQSIGLQRP-PPLFRKTALKMGLKD 840 (848)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~~~~e~~~~s~l~~y~~~~~~~~-~~~-~~~~l~~~la~s~GL~~~-P~v~~~~~~k~gl~~ 840 (848)
....+....+...+... ........++|+.||++.....+ +.. .+.+++..|+.-.+.+.. |.+..+++.+|||.+
T Consensus 472 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~ 550 (563)
T 3i5x_A 472 EPSEEIKSEVLEAVTEE-PEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSR 550 (563)
T ss_dssp CCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHHHHHHHTCTT
T ss_pred CccHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHcCCCC
Confidence 33333333333322211 22234566889999988754433 222 244566666666555543 678899999999999
Q ss_pred CCCce
Q 003100 841 IPGIR 845 (848)
Q Consensus 841 ~pgl~ 845 (848)
.|+.+
T Consensus 551 ~~~~~ 555 (563)
T 3i5x_A 551 SPIGK 555 (563)
T ss_dssp CHHHH
T ss_pred CccHH
Confidence 98753
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-53 Score=480.10 Aligned_cols=366 Identities=31% Similarity=0.448 Sum_probs=310.1
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCC----------
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS---------- 447 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~---------- 447 (848)
..+|+++++++.++++|..+||..||++|.++|+.++.++|++++||||||||++|++|+++.+......
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3569999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred CCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC
Q 003100 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (848)
Q Consensus 448 ~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~ 527 (848)
.......++++|||+||++||.|+++.+.+++.. .++.+..++|+.........+. .+++|+|+||++|.+++...
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~~-- 169 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLE-RGCHLLVATPGRLVDMMERG-- 169 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHT-TCCSEEEECHHHHHHHHHTT--
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhh-CCCCEEEEChHHHHHHHHcC--
Confidence 0001112357999999999999999999998764 3788999999988776655554 45899999999999999876
Q ss_pred cccccCCccEEEEecccccccccchhhHHHHHHh--cCc--cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCccc
Q 003100 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVE 603 (848)
Q Consensus 528 ~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~--l~~--~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~ 603 (848)
...+..+++|||||||++++++|...+..++.. +++ .+|+++||||++..+..+...++..+.. +.... ...
T Consensus 170 -~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 245 (417)
T 2i4i_A 170 -KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIF-LAVGR--VGS 245 (417)
T ss_dssp -SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEE-EEEC------
T ss_pred -CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEE-EEeCC--CCC
Confidence 355788999999999999999999999999884 333 6899999999999998888887764432 22211 112
Q ss_pred ccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHH
Q 003100 604 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 683 (848)
Q Consensus 604 ~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F 683 (848)
....+.+.+..+....+...+..++... ..++++||||+++..++.++..|...++.+..+||++++.+|..+++.|
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH
Confidence 3445667777778888888888887753 3567999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 684 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 684 ~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|+..|||||+++++|+|+|++++||+|++|.+..+|+||+|||||.|+.|.|++|+++.+...++.+.+
T Consensus 323 ~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 323 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777666543
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5e-53 Score=478.24 Aligned_cols=358 Identities=30% Similarity=0.510 Sum_probs=308.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|+++++++.++++|..+||..|+++|.++++.++++++++++++||||||++|++|+++.+... ..+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--------cCCc
Confidence 34679999999999999999999999999999999999999999999999999999999998776321 1234
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++|+.|+++.+.++.... ++.+..++|+.....+...+.. +++|+|+||++|.+++... ...+..++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~---~~~~~~~~ 181 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRR---SLRTRAIK 181 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhC---CccHhhee
Confidence 79999999999999999999987544 7889999999887766655543 4799999999999999876 35577899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+|||||||++++++|...+..++..+++..|+++||||++..+..+...++..+..+.. . ........+.+.+..+.
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV-K--RDELTLEGIKQFFVAVE 258 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC-C--GGGCSCTTEEEEEEEES
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEe-c--CccccCCCceEEEEEeC
Confidence 99999999999999999999999999999999999999999887777666654433321 1 11123334555555544
Q ss_pred h-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 617 H-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 617 ~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
. ..+...+..++... ...++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+
T Consensus 259 ~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 259 REEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp STTHHHHHHHHHHHHH----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred cHHhHHHHHHHHHHhc----CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 4 44778888877765 356999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+.+.+...++.+++
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 393 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHH
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877765
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.8e-52 Score=464.47 Aligned_cols=361 Identities=28% Similarity=0.432 Sum_probs=311.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
....|+++++++.++++|.++||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..+.
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 77 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQV 77 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCe
Confidence 34679999999999999999999999999999999999999999999999999999999998776322 1234
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++|+.|+++.+.++....+++.+..++|+.........+..+.++|+|+||++|..++... ...+.+++
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~ 154 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIK 154 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCS
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccccccC
Confidence 799999999999999999999988777899999999988877766676666899999999999988765 34578899
Q ss_pred EEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 537 MLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 537 ~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
+|||||||++.+ .+|...+..++...++..|++++|||++..+..+...++..+..+.. . .........+.+.+...
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV-D-DETKLTLHGLQQYYVKL 232 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEEC-C-CCCCCCCTTCEEEEEEC
T ss_pred EEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEe-c-CccccCcccceEEEEEc
Confidence 999999999987 47889999999999999999999999999998888888765544321 1 11122334456666777
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
....+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+
T Consensus 233 ~~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp CGGGHHHHHHHHHHHS----CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred CchhHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 7788888888877754 567999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhcc
Q 003100 696 VSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 754 (848)
Q Consensus 696 vl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~~ 754 (848)
++++|+|+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++. +..+++.+++
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 4456666653
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-52 Score=471.05 Aligned_cols=358 Identities=28% Similarity=0.474 Sum_probs=296.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.+++.|.++||..|+++|.++|+.+++|+++++++|||||||++|++|+++.+.... .+.+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 110 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KATQ 110 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCC
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------Ccee
Confidence 46799999999999999999999999999999999999999999999999999999999998764321 2347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.+++... ++.+..++|+.........+....++|+|+||++|++++... ...+..+++
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~~ 186 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSPKYIKM 186 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCSTTCCE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccCcE
Confidence 9999999999999999999987654 788899999988887777777677899999999999999876 355678999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC-
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP- 616 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~- 616 (848)
|||||||++.+++|...+..++..+++..|+++||||++..+..+...++..+..+... ........+.+.+....
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 263 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK---KEELTLEGIRQFYINVER 263 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC---CCCCCTTSCCEEEEECSS
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec---CCccCCCCceEEEEEeCh
Confidence 99999999999999999999999999999999999999999988888777654433211 11122333444444443
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...+...+..++... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|..+|||||++
T Consensus 264 ~~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 264 EEWKLDTLCDLYETL----TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp STTHHHHHHHHHHSS----CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred HHhHHHHHHHHHHhC----CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 344777777766643 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+...++.+++
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888877765
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-53 Score=493.08 Aligned_cols=365 Identities=30% Similarity=0.423 Sum_probs=180.5
Q ss_pred ccCCCCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCC
Q 003100 369 KREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446 (848)
Q Consensus 369 ~~~~~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~ 446 (848)
.....+.....+|.++++++.++++|..+||..|+++|.++|+.++.+ +++|++||||||||++|++|+++.+....
T Consensus 82 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~- 160 (479)
T 3fmp_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 160 (479)
T ss_dssp SSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-
T ss_pred CCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-
Confidence 344556666788999999999999999999999999999999999987 99999999999999999999987764322
Q ss_pred CCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc
Q 003100 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS 526 (848)
Q Consensus 447 ~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~ 526 (848)
.++++|||+||++||.|+++.+.++....+++.+.+.+++....... ...++|+|+||++|++++.+..
T Consensus 161 -------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 161 -------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp -------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC
T ss_pred -------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcC
Confidence 23479999999999999999999998887788898888887654322 2347999999999999997643
Q ss_pred CcccccCCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCccccc
Q 003100 527 GLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETP 605 (848)
Q Consensus 527 ~~~~~l~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~ 605 (848)
.+.+.++++|||||||++++ .+|...+..++..+++.+|+++||||++..+..++..++..+. .+.... .....
T Consensus 230 --~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~i~~~~--~~~~~ 304 (479)
T 3fmp_B 230 --FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-VIKLKR--EEETL 304 (479)
T ss_dssp --CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEE-EEEEC--------
T ss_pred --CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCe-EEeccc--cccCc
Confidence 34568899999999999987 6889999999999999999999999999999998888876433 333221 12233
Q ss_pred ceeecccccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHh
Q 003100 606 VKIKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR 684 (848)
Q Consensus 606 ~~v~q~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~ 684 (848)
..+.+.++.+.. ..++..+..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhc----cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 455566555544 45666666665543 4568999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCccccccCCCCCeeEEcCCCC------ChhHHHHHhhccCCCCCCceEEEEeCcch-hhHHHHhcc
Q 003100 685 ASKRLILVTSDVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD 754 (848)
Q Consensus 685 ~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e-~~~l~~L~~ 754 (848)
+|+.+|||||+++++|||+|+|++||+||+|. +..+|+||+|||||.|+.|.|++|+.+.+ ..+++.+++
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHH
Confidence 99999999999999999999999999999994 66899999999999999999999998765 566666654
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3e-51 Score=461.82 Aligned_cols=356 Identities=31% Similarity=0.473 Sum_probs=308.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.++++|.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+.... .+.+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 91 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQ 91 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCcc
Confidence 45799999999999999999999999999999999999999999999999999999999997764321 2347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.+++... ++.+..++|+.........+. ..++|+|+||++|.+++... ...+.++++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~ 166 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRK---VADLSDCSL 166 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTT---CSCCTTCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhc-CCCCEEEEchHHHHHHHHhC---CcccccCCE
Confidence 9999999999999999999987654 788889999887765544443 45899999999999988765 345788999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCCh
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPH 617 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~ 617 (848)
|||||||++.+.+|...+..++..+++..|+++||||++..+..+....+..+..+ ... .......+.+.+..+..
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI-NLM---EELTLKGITQYYAFVEE 242 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE-SCC---SSCBCTTEEEEEEECCG
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEE-Eec---cccccCCceeEEEEech
Confidence 99999999999889999999999999999999999999999888877777654332 211 11233445666667777
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||+++
T Consensus 243 ~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 318 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL----QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 318 (400)
T ss_dssp GGHHHHHHHHHHHS----CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCS
T ss_pred hhHHHHHHHHHhhc----CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence 78888887777653 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.|...++.+++
T Consensus 319 ~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 319 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777664
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.4e-51 Score=462.18 Aligned_cols=364 Identities=30% Similarity=0.432 Sum_probs=307.8
Q ss_pred cCCCCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCC
Q 003100 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (848)
Q Consensus 370 ~~~~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~ 447 (848)
....+.....+|+++++++.++++|.++||..|+++|.++++.++++ ++++++||||+|||++|++|+++.+....
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-- 93 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 93 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--
Confidence 44556667788999999999999999999999999999999999997 99999999999999999999998774332
Q ss_pred CCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccC
Q 003100 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (848)
Q Consensus 448 ~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~ 527 (848)
.+.++||++||++||.|+++.+.++....+++.+....++....... ...++|+|+||++|.+++.+..
T Consensus 94 ------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~- 162 (412)
T 3fht_A 94 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK- 162 (412)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcC-
Confidence 23479999999999999999999998877788899888887654322 3457999999999999997643
Q ss_pred cccccCCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccc
Q 003100 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPV 606 (848)
Q Consensus 528 ~~~~l~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~ 606 (848)
...+.++++|||||||++++ .+|...+..+...+++..|+++||||++..+..+...++..+.. +.... ......
T Consensus 163 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~ 238 (412)
T 3fht_A 163 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV-IKLKR--EEETLD 238 (412)
T ss_dssp -SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE-ECCCG--GGSSCT
T ss_pred -CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeE-Eeecc--cccccc
Confidence 34567899999999999987 67888999999999999999999999999998888888764433 32211 122333
Q ss_pred eeecccccCC-hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc
Q 003100 607 KIKQSCLVAP-HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 607 ~v~q~~~~~~-~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
.+.+.+.... ...+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 314 (412)
T 3fht_A 239 TIKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 314 (412)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHH----SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCChHHHHHHHHHHHhhc----CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC
Confidence 4445544443 456777777777654 45799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCC------CChhHHHHHhhccCCCCCCceEEEEeCcch-hhHHHHhcc
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD 754 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e-~~~l~~L~~ 754 (848)
|+.+|||||+++++|+|+|++++||+|++| .+..+|+||+||+||.|+.|.|++|+.+.+ ..+++.+++
T Consensus 315 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 390 (412)
T 3fht_A 315 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390 (412)
T ss_dssp TSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHH
Confidence 999999999999999999999999999999 467899999999999999999999998764 666766654
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-50 Score=445.49 Aligned_cols=350 Identities=33% Similarity=0.547 Sum_probs=305.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
..+|+++++++.++++|.++||..|+++|.++++.++++ +++++++|||+|||++|++|++..+... .+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGI 75 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCC
Confidence 356999999999999999999999999999999999988 6999999999999999999998765321 234
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++|+.|+++.+.+++.. .++.+..++|+.........+. .++|+|+||++|.+++... ...+.+++
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~---~~~~~~~~ 149 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRG---TLNLKNVK 149 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTT---CSCTTSCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcC---CcccccCC
Confidence 7999999999999999999998865 3678889999988766555554 4799999999999998765 34578899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP 616 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~ 616 (848)
+|||||||++.+++|...+..++..+++..+++++|||++..+..+...++.. ..++... ....+.+.+..+.
T Consensus 150 ~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~ 222 (367)
T 1hv8_A 150 YFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGD-YSFIKAK------INANIEQSYVEVN 222 (367)
T ss_dssp EEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCS-EEEEECC------SSSSSEEEEEECC
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCC-CeEEEec------CCCCceEEEEEeC
Confidence 99999999999999999999999999999999999999999988887777653 3333221 1224556666677
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...++..+..++. ....++||||++...++.+++.|...++.+..+||++++.+|..+++.|++|+..|||||++
T Consensus 223 ~~~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 297 (367)
T 1hv8_A 223 ENERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp GGGHHHHHHHHHC-----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred hHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 7788887777665 35679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+++|+|+|++++||++++|.++.+|+||+||+||.|+.|.|++++++.|...++.+++
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877777754
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-50 Score=450.83 Aligned_cols=353 Identities=29% Similarity=0.438 Sum_probs=294.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCC
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~ 455 (848)
..+|+++++++.++++|.++||..|+++|.++++.++.+ ++++++||||+|||++|++|++..+.... .+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~ 75 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------AS 75 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CC
Confidence 367999999999999999999999999999999999998 99999999999999999999998764322 23
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
.++||++||++|+.|+++.+.++.... ++.+...+++...... ...++|+|+||++|.+++... ...+.++
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~---~~~~~~~ 146 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRRK---LMQLQKI 146 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHTT---CBCCTTC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHcC---CcccccC
Confidence 479999999999999999999987644 6777777776543221 234799999999999998765 3557889
Q ss_pred cEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc
Q 003100 536 KMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV 614 (848)
Q Consensus 536 ~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~ 614 (848)
++|||||||++.+ .++...+..+...+++..|+++||||+++.+..+...++..+..+. ... .......+.+.+..
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLE-LQT--NEVNVDAIKQLYMD 223 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEEC-CCG--GGCSCTTEEEEEEE
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEE-ccc--cccccccccEEEEE
Confidence 9999999999987 7789999999999999999999999999999888888776443332 111 11122334444444
Q ss_pred C-ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEe
Q 003100 615 A-PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVT 693 (848)
Q Consensus 615 ~-~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVa 693 (848)
+ ....+...+..++.. ...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..||||
T Consensus 224 ~~~~~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 224 CKNEADKFDVLTELYGL----MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299 (395)
T ss_dssp CSSHHHHHHHHHHHHTT----TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred cCchHHHHHHHHHHHHh----ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 3 445566666555443 35679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCeeEEcCCCC------ChhHHHHHhhccCCCCCCceEEEEeCcch-hhHHHHhcc
Q 003100 694 SDVSARGMDYPDVTSVVQVGIPP------DREQYIHRLGRTGREGKEGEGVLLLAPWE-EYFLDDLKD 754 (848)
Q Consensus 694 Tdvl~rGlDip~V~~VI~yd~P~------s~~~yiQRiGRaGR~G~~G~~i~l~~~~e-~~~l~~L~~ 754 (848)
|+++++|+|+|++++||+||+|. ++.+|+||+||+||.|+.|.|++|+.+.+ ..+++.+++
T Consensus 300 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred CChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999998744 456666554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6e-51 Score=457.39 Aligned_cols=355 Identities=32% Similarity=0.514 Sum_probs=176.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|+++++++.+++.|..+||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.... .+.++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~ 92 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQA 92 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCE
Confidence 5699999999999999999999999999999999999999999999999999999999998764321 23479
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++||++|+.|+++.+.+++... ++.+..++|+.........+. .++|+|+||++|.+.+... ...+.++++|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~---~~~~~~~~~v 166 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRR---RFRTDKIKMF 166 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTT---SSCCTTCCEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhC---CcchhhCcEE
Confidence 999999999999999999987653 688999999988765555444 3799999999999998765 3456789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
||||||++.+++|...+..++..+++..|+++||||+++.+..+...++..+..+.... .......+.+.+..+...
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK---DELTLEGIKQFYVNVEEE 243 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC---ccccCCCceEEEEEcCch
Confidence 99999999999999999999999999999999999999998888877776554433211 111222344444433333
Q ss_pred -hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 619 -LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 619 -~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 244 ~~~~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 244 EYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhcC----CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 3555555555432 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+..+++.+++
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877777655
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.6e-48 Score=421.71 Aligned_cols=332 Identities=31% Similarity=0.522 Sum_probs=279.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
+++.+.++|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++. +.++||++||+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5788999999999999999999999999999999999999999999999998753 12699999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc
Q 003100 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (848)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ 545 (848)
+|+.|+++.+.+++... ++.+..++|+.........+.. ++|+|+||++|.+++... ...+.++++||+||||+
T Consensus 67 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADL 140 (337)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHH
T ss_pred HHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHH
Confidence 99999999999987654 6788899998877655555433 799999999999988765 34567899999999999
Q ss_pred cccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHH
Q 003100 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILH 625 (848)
Q Consensus 546 ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~ 625 (848)
+.+++|...+..++..++...++++||||++..+......++.....+ ... .....+.+.+.......+.. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~--~ 212 (337)
T 2z0m_A 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEI-EAC-----IGLANVEHKFVHVKDDWRSK--V 212 (337)
T ss_dssp HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEE-ECS-----GGGGGEEEEEEECSSSSHHH--H
T ss_pred hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceee-ecc-----cccCCceEEEEEeChHHHHH--H
Confidence 999999999999999999999999999999999888887777643332 211 12223334444333332221 1
Q ss_pred HHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCC
Q 003100 626 HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPD 705 (848)
Q Consensus 626 ~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~ 705 (848)
..+ ....++++||||++.+.++.++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 213 ~~~----~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 284 (337)
T 2z0m_A 213 QAL----RENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPL 284 (337)
T ss_dssp HHH----HTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCC
T ss_pred HHH----HhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccC
Confidence 222 23467899999999999999998886 5889999999999999999999999999999999999999999
Q ss_pred CCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 706 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 706 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
+++||+|++|.++.+|+||+||+||.|+.|.|++|+. .|..+++.+++
T Consensus 285 ~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 285 VEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp BSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 9999999999999999999999999999999999999 77777777765
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.9e-47 Score=452.18 Aligned_cols=343 Identities=17% Similarity=0.254 Sum_probs=276.6
Q ss_pred cccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 381 FDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 381 f~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
+.++++++.+.+.|+. +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +.++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~l 88 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFTL 88 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcEE
Confidence 4568899999999998 69999999999999999999999999999999999999999741 12799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhh---h--hcCCCcEEEeChHHHH------HHHHhccCc
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR---L--ESDPCQILVATPGRLL------DHIENKSGL 528 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l--~~~~~~IIV~TPgrLl------~~L~~~~~~ 528 (848)
||+|+++|+.|+++.+.++ ++.+..+.|+......... + ....++|+|+||++|. +.+..
T Consensus 89 VisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~---- 159 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK---- 159 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH----
T ss_pred EEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh----
Confidence 9999999999999999886 6778888888765533222 2 2456899999999874 23332
Q ss_pred ccccCCccEEEEeccccccccc--chhhHHH--HHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccc
Q 003100 529 SVRLMGLKMLVLDEADHLLDLG--FRKDVEN--IVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVET 604 (848)
Q Consensus 529 ~~~l~~l~~lVIDEAH~ll~~g--f~~~l~~--Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~ 604 (848)
...+.++++|||||||++.+|| |++.+.. ++....+..|+++||||++..+...+...+..+...+........
T Consensus 160 ~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-- 237 (591)
T 2v1x_A 160 AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-- 237 (591)
T ss_dssp HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT--
T ss_pred hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc--
Confidence 2446789999999999999998 8887765 444445678999999999998877776666544333222211111
Q ss_pred cceeecccccC--ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHH
Q 003100 605 PVKIKQSCLVA--PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 682 (848)
Q Consensus 605 ~~~v~q~~~~~--~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~ 682 (848)
++...+... ....+...+..++... ..+.++||||+|++.++.++..|...++.+..+||+|++.+|..+++.
T Consensus 238 --nl~~~v~~~~~~~~~~~~~l~~~l~~~---~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 312 (591)
T 2v1x_A 238 --NLYYEVRQKPSNTEDFIEDIVKLINGR---YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRK 312 (591)
T ss_dssp --TEEEEEEECCSSHHHHHHHHHHHHTTT---TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred --ccEEEEEeCCCcHHHHHHHHHHHHHHh---ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 111111111 1233444555554432 256799999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhc
Q 003100 683 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 683 F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~ 753 (848)
|++|+..|||||+++++|||+|+|++||+|++|.+++.|+||+|||||.|.+|.|++|+++.|...+..+.
T Consensus 313 F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 313 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp HHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred HHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877766654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.1e-47 Score=442.84 Aligned_cols=343 Identities=20% Similarity=0.278 Sum_probs=274.3
Q ss_pred cCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 379 KRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..|+++++++.+.+.|++ +||..|+++|.++|+.+++|+|+++++|||+|||++|++|++.. . ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~-----------g~ 67 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N-----------GL 67 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S-----------SE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C-----------CC
Confidence 358999999999999998 89999999999999999999999999999999999999999732 1 26
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCC
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~ 534 (848)
+|||+|+++|+.|+.+.+..+ ++.+..+.++...... ...+..+.++|+|+||++|....... .+...+
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~ 139 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWN 139 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSC
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCC
Confidence 899999999999999998875 6778888887664432 23344566899999999995321111 123467
Q ss_pred ccEEEEeccccccccc--chhhHHHH---HHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceee
Q 003100 535 LKMLVLDEADHLLDLG--FRKDVENI---VDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIK 609 (848)
Q Consensus 535 l~~lVIDEAH~ll~~g--f~~~l~~I---l~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~ 609 (848)
+++|||||||++.+|| |+..+..+ ...+ +..+++++|||++..+.......+......+....... .++
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r----~~l- 213 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR----PNI- 213 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC----TTE-
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC----Cce-
Confidence 8999999999999988 77766554 3334 46889999999998876544333322111221111111 111
Q ss_pred cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCce
Q 003100 610 QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRL 689 (848)
Q Consensus 610 q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~ 689 (848)
.+.......+...+..++... ++.++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++|+..
T Consensus 214 -~~~v~~~~~~~~~l~~~l~~~----~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 288 (523)
T 1oyw_A 214 -RYMLMEKFKPLDQLMRYVQEQ----RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288 (523)
T ss_dssp -EEEEEECSSHHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred -EEEEEeCCCHHHHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 122223345566666666653 567999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 690 ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 690 VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|.+|.|++|+++.|...++.+-.
T Consensus 289 vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988776665543
No 17
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-46 Score=469.00 Aligned_cols=341 Identities=18% Similarity=0.187 Sum_probs=264.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
..|..+++++.+...+...++..|+++|.++|+.+++|+++|++|+||||||++|++|++..+.. +.++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rv 230 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRV 230 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCeE
Confidence 45777888887777777777778999999999999999999999999999999999999988743 2379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++||++||.|+++.+.+++. .+.+++|+.... ..++|+|+||++|.+++.... ..+.++++|
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lV 294 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGS---EVMREVAWV 294 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCS---SHHHHEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCc---cccccCCEE
Confidence 9999999999999999999864 477888887643 348999999999999998763 446789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHH--HHHHHHhccceEEEeecCCCcccccceeeccccc--
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVR--RISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV-- 614 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~--~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~-- 614 (848)
||||||++.+++|...+..++..+++..|+|+||||+++... .+.......+..++.... .+..+.++++.
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~-----rp~pl~~~~~~~~ 369 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-----RPTPLQHYLFPAH 369 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC-----CSSCEEEEEEETT
T ss_pred EEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-----CcccceEEEeecC
Confidence 999999999999999999999999999999999999987533 333333333333332211 11111111110
Q ss_pred -------CChh----------------------------------------hH---HHHHHHHHHHHhhCCCCceEEEEE
Q 003100 615 -------APHE----------------------------------------LH---FQILHHLLKEHILGTPDYKVIVFC 644 (848)
Q Consensus 615 -------~~~~----------------------------------------~k---~~~L~~lL~~~~~~~~~~kiLVF~ 644 (848)
+... .+ ...+..++..... ....++||||
T Consensus 370 ~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~ 448 (1108)
T 3l9o_A 370 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFS 448 (1108)
T ss_dssp SSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEe
Confidence 0000 00 2223333333222 3467999999
Q ss_pred ecchHHHHHHHHHHHhccc---------------------------------------eeeecCCcchhhHHHHHHHHhc
Q 003100 645 STGMVTSLLYLLLREMKMN---------------------------------------VREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 645 ~s~~~a~~l~~~L~~~~~~---------------------------------------v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
+++..|+.++..|...++. +..+||+|++.+|..++..|++
T Consensus 449 ~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~ 528 (1108)
T 3l9o_A 449 FSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQE 528 (1108)
T ss_dssp SCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC
Confidence 9999999999988654332 7899999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCC--------CChhHHHHHhhccCCCC--CCceEEEEeCcc-hhhHHHHh
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIP--------PDREQYIHRLGRTGREG--KEGEGVLLLAPW-EEYFLDDL 752 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P--------~s~~~yiQRiGRaGR~G--~~G~~i~l~~~~-e~~~l~~L 752 (848)
|.++|||||+++++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++.+. +...+..+
T Consensus 529 G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 529 GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999999999999999999987764 46778999999999999 689999998875 33344443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.9e-46 Score=421.73 Aligned_cols=321 Identities=21% Similarity=0.283 Sum_probs=255.3
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 390 TIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 390 l~~~L~~-~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
+.+.+++ .|| .|+++|.++++.+++|+|++++||||||||++|++|++..+. .+.++|||+||++||
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHHH
Confidence 4455554 466 699999999999999999999999999999999999887651 124799999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeCCcch---hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc
Q 003100 469 SQIAAEAIALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (848)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~v~~l~gg~~~---~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ 545 (848)
.|+++.+.+++. .++.+..++|+... ......+..+.++|+|+||++|.+++.. ..+.++++|||||||+
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHh
Confidence 999999999866 58899999999887 4445556566689999999999988864 3456899999999987
Q ss_pred ccc-----------ccchhh-HHHHHHhcC-----------ccceeEEEecc-CChHHH-HHHHHHhccceEEEeecCCC
Q 003100 546 LLD-----------LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKEVR-RISQLVLKREHTYIDTVGLG 600 (848)
Q Consensus 546 ll~-----------~gf~~~-l~~Il~~l~-----------~~~Q~ll~SAT-l~~~v~-~l~~~~l~~~~~~i~~~~~~ 600 (848)
+.+ ++|... +..++..++ ..+|+++|||| .|..+. .+....+. +... .
T Consensus 151 ~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~~--~ 223 (414)
T 3oiy_A 151 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--R 223 (414)
T ss_dssp HHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCSS--C
T ss_pred hhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCcC--c
Confidence 653 778888 788888876 78999999999 565543 23333322 1111 1
Q ss_pred cccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcccee-eecCCcchhhHHHH
Q 003100 601 SVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR-EMYSRKPQLYRDRI 679 (848)
Q Consensus 601 ~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~-~lhg~ls~~~R~~i 679 (848)
.......+.+.+... .+...+..++... +.++||||+++..++.++..|...++.+. .+||. +|.
T Consensus 224 ~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~-- 289 (414)
T 3oiy_A 224 LVSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN-- 289 (414)
T ss_dssp CCCCCCSEEEEEESS---CCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--
T ss_pred cccccccchheeecc---CHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--
Confidence 112233455555544 3445566666652 37999999999999999999999999998 99995 344
Q ss_pred HHHHhcCCceEEEe----cCCccccccCCC-CCeeEEcCCC--CChhHHHHHhhccCCCC----CCceEEEEeCcchhhH
Q 003100 680 SEEFRASKRLILVT----SDVSARGMDYPD-VTSVVQVGIP--PDREQYIHRLGRTGREG----KEGEGVLLLAPWEEYF 748 (848)
Q Consensus 680 ~~~F~~G~~~VLVa----Tdvl~rGlDip~-V~~VI~yd~P--~s~~~yiQRiGRaGR~G----~~G~~i~l~~~~e~~~ 748 (848)
++.|++|+++|||| |+++++|+|+|+ |++||+||+| .+..+|+||+|||||.| +.|.|++|+ .+..+
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~ 367 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEI 367 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHH
T ss_pred HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHH
Confidence 99999999999999 999999999999 9999999999 99999999999999988 589999999 44444
Q ss_pred HHHh
Q 003100 749 LDDL 752 (848)
Q Consensus 749 l~~L 752 (848)
++.+
T Consensus 368 ~~~l 371 (414)
T 3oiy_A 368 FESL 371 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-46 Score=435.43 Aligned_cols=350 Identities=26% Similarity=0.356 Sum_probs=243.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 381 f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
|...++++.+++.+.+.||..|+++|.++|+.++++ ++++++||||||||++|++|++..+.... .+.++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~v 192 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQA 192 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCE
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceE
Confidence 556678899999999999999999999999999998 99999999999999999999998774432 23479
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
|||+||++|+.|+++.+.+++... ++.+...+++..... ....++|+|+||++|.+++... ...+.++++|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~---~~~~~~~~lI 263 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRR---QLDARDIKVF 263 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTT---CSCCTTCCEE
T ss_pred EEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcC---CccccCCCEE
Confidence 999999999999999999987643 455555555443221 1225899999999999988765 3457889999
Q ss_pred EEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC-C
Q 003100 539 VLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA-P 616 (848)
Q Consensus 539 VIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~-~ 616 (848)
||||||++.+ .++...+..++..+++..|++++|||+++.+..+...++..+.. +.... .......+.+.+... .
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANE-IRLKT--EELSVEGIKQLYMDCQS 340 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEE-ECCCC--CC----CCCCEEEEC--
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeE-EEecc--ccCCcccceEEEEECCc
Confidence 9999999987 67999999999999999999999999999998888887764433 22211 111222333333333 3
Q ss_pred hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 617 HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 617 ~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
...+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 341 ~~~k~~~l~~ll~~~----~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~ 416 (508)
T 3fho_A 341 EEHKYNVLVELYGLL----TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 416 (508)
T ss_dssp CHHHHHHHHHHHC-------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-
T ss_pred hHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCCh
Confidence 445566665555432 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeEEcCCC------CChhHHHHHhhccCCCCCCceEEEEeCc-chhhHHHHhcc
Q 003100 697 SARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAP-WEEYFLDDLKD 754 (848)
Q Consensus 697 l~rGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~l~~~-~e~~~l~~L~~ 754 (848)
+++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+.+ .+...++.+++
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~ 481 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHH
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999 7899999999999999999999999985 34455555544
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-42 Score=420.44 Aligned_cols=333 Identities=21% Similarity=0.246 Sum_probs=262.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
.+|+++++++.+.+.+.+.||..|+++|.++++. +.++++++++||||||||++|.+|+++.+... +.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCe
Confidence 5699999999999999999999999999999999 78899999999999999999999999887643 237
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++|+++||.|+++.+..+.. . ++.+..++|+....... + ..++|+|+||++|..++.+.. ..+.++++
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~ 148 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDAW--L--KNYDIIITTYEKLDSLWRHRP---EWLNEVNY 148 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCGG--G--GGCSEEEECHHHHHHHHHHCC---GGGGGEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchhh--c--CCCCEEEEcHHHHHHHHhCCh---hHhhccCE
Confidence 99999999999999999954433 2 78899999987654321 2 247999999999999888752 34778999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc-----
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC----- 612 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~----- 612 (848)
|||||||++.+.++...+..++..++ ..|+|+||||+++ ...++.++.. + .+.... .+..+...+
T Consensus 149 vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~-~--~~~~~~-----r~~~l~~~~~~~~~ 218 (715)
T 2va8_A 149 FVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGA-E--PVATNW-----RPVPLIEGVIYPER 218 (715)
T ss_dssp EEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTC-E--EEECCC-----CSSCEEEEEEEECS
T ss_pred EEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCC-C--ccCCCC-----CCCCceEEEEecCC
Confidence 99999999998888888888888776 8999999999986 3555555432 1 111100 111111100
Q ss_pred -------ccCC--------hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc----------------
Q 003100 613 -------LVAP--------HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK---------------- 661 (848)
Q Consensus 613 -------~~~~--------~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~---------------- 661 (848)
.... .......+...+ ..++++||||++++.++.++..|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 292 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQ 292 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHH------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHH------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 0000 122333333332 246899999999999999999987641
Q ss_pred --------------------cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----cC----
Q 003100 662 --------------------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG---- 713 (848)
Q Consensus 662 --------------------~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----yd---- 713 (848)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 293 ~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 293 LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp HHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred HHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 25899999999999999999999999999999999999999999999999 99
Q ss_pred ---CCCChhHHHHHhhccCCCC--CCceEEEEeCcchh
Q 003100 714 ---IPPDREQYIHRLGRTGREG--KEGEGVLLLAPWEE 746 (848)
Q Consensus 714 ---~P~s~~~yiQRiGRaGR~G--~~G~~i~l~~~~e~ 746 (848)
.|.+..+|+||+|||||.| ..|.|++++++.+.
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 8999999999999999988 47999999987663
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1e-43 Score=422.38 Aligned_cols=329 Identities=19% Similarity=0.217 Sum_probs=255.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
.+|| .||++|..++|.+++|+ |+.|+||+|||++|+||++...+. +..++||+||++||.|+++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 4799 89999999999999998 999999999999999999854332 235999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccC---cccccCCccEEEEecccccc-ccc
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DLG 550 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~---~~~~l~~l~~lVIDEAH~ll-~~g 550 (848)
..++.+. ++.+.+++||.+....... .+++|+|+||++| .++|..... ....++.+.++||||||+|+ +.+
T Consensus 145 ~~l~~~l-gl~v~~i~gg~~~~~r~~~---~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 145 GKIFEFL-GLTVGLNLNSMSKDEKREA---YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHT-TCCEEECCTTSCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9998876 8999999999875433222 2489999999999 777765421 13457889999999999998 664
Q ss_pred ---------------chhhHHHHHHhcC---------ccceeE-----------------EEeccCChHHHHHH-----H
Q 003100 551 ---------------FRKDVENIVDCLP---------RRRQSL-----------------LFSATMPKEVRRIS-----Q 584 (848)
Q Consensus 551 ---------------f~~~l~~Il~~l~---------~~~Q~l-----------------l~SATl~~~v~~l~-----~ 584 (848)
|...+..|+..++ +.+|++ +||||++..+..+. .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 6788999999997 478888 99999874333322 2
Q ss_pred HHhccceEEEe------ecC---------------------------CC-cccccceee---------------------
Q 003100 585 LVLKREHTYID------TVG---------------------------LG-SVETPVKIK--------------------- 609 (848)
Q Consensus 585 ~~l~~~~~~i~------~~~---------------------------~~-~~~~~~~v~--------------------- 609 (848)
.++..+..++- .+. .. ...+...+.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 22222111110 000 00 000000011
Q ss_pred --------------------------cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccc
Q 003100 610 --------------------------QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 663 (848)
Q Consensus 610 --------------------------q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~ 663 (848)
+.++......|+..+...+..... .+.++||||+|++.++.++..|...|+.
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~gi~ 458 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNKGIP 458 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 113344667788888887765321 2458999999999999999999999999
Q ss_pred eeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCC--------CCCeeEEcCCCCChhHHHHHhhccCCCCCCc
Q 003100 664 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEG 735 (848)
Q Consensus 664 v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G 735 (848)
+..+||++.+.+|..+...|+.| .|||||++++||+||+ ++.+||+|++|.+...|+||+|||||.|.+|
T Consensus 459 ~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 459 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 99999999888887666666555 6999999999999999 8889999999999999999999999999999
Q ss_pred eEEEEeCcchh
Q 003100 736 EGVLLLAPWEE 746 (848)
Q Consensus 736 ~~i~l~~~~e~ 746 (848)
.+++|++..|.
T Consensus 537 ~s~~~vs~eD~ 547 (844)
T 1tf5_A 537 ITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEETTSS
T ss_pred eEEEEecHHHH
Confidence 99999998763
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.4e-42 Score=421.63 Aligned_cols=332 Identities=20% Similarity=0.228 Sum_probs=268.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~-il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
+|+++++++.+.+.+.+.||..|+++|.++++. ++++++++++||||||||++|.+|+++.+...+ .++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----------~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG----------GKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----------SEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC----------CEE
Confidence 589999999999999999999999999999998 889999999999999999999999998887532 379
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++|+++||.|+++.+.++... ++.+..++|+....... + ..++|+|+||++|..++.+.. ..+.++++|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~v 142 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW--L--GKYDIIIATAEKFDSLLRHGS---SWIKDVKIL 142 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG--G--GGCSEEEECHHHHHHHHHHTC---TTGGGEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCccccc--c--CCCCEEEECHHHHHHHHHcCh---hhhhcCCEE
Confidence 99999999999999999655432 78899999976654321 2 247999999999999888752 336789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccc-----
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCL----- 613 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~----- 613 (848)
||||||++.++++...+..++..++...|+|+||||+++ ...+..++.. . .+... ..+..+...+.
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~-~--~~~~~-----~rp~~l~~~~~~~~~~ 213 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNA-E--LIVSD-----WRPVKLRRGVFYQGFV 213 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTE-E--EEECC-----CCSSEEEEEEEETTEE
T ss_pred EEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCC-c--ccCCC-----CCCCcceEEEEeCCee
Confidence 999999999988999999999988778999999999986 3455554421 1 11110 01111111110
Q ss_pred -cCC-----hhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhc--------------------------
Q 003100 614 -VAP-----HELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMK-------------------------- 661 (848)
Q Consensus 614 -~~~-----~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~-------------------------- 661 (848)
... .......+...+. .++++||||++++.++.++..|.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 214 TWEDGSIDRFSSWEELVYDAIR------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp EETTSCEEECSSTTHHHHHHHH------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred eccccchhhhhHHHHHHHHHHh------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 111 1223333433332 45799999999999999999987531
Q ss_pred -------cceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----cC----CCCChhHHHHHhh
Q 003100 662 -------MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG----IPPDREQYIHRLG 726 (848)
Q Consensus 662 -------~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----yd----~P~s~~~yiQRiG 726 (848)
..+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~G 367 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLG 367 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHT
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHh
Confidence 24899999999999999999999999999999999999999999999998 76 5899999999999
Q ss_pred ccCCCC--CCceEEEEeCcch
Q 003100 727 RTGREG--KEGEGVLLLAPWE 745 (848)
Q Consensus 727 RaGR~G--~~G~~i~l~~~~e 745 (848)
||||.| ..|.|++++++.+
T Consensus 368 RaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 368 RAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp TBCCTTTCSEEEEEEECSSSC
T ss_pred hcCCCCCCCCceEEEEecCcc
Confidence 999988 5799999998876
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.6e-43 Score=412.38 Aligned_cols=337 Identities=16% Similarity=0.181 Sum_probs=201.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
++...|+++|.++++.+++++++++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999988865431 113479999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++.++++...+.
T Consensus 77 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~ 152 (556)
T 4a2p_A 77 HHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLM 152 (556)
T ss_dssp HHHGGG-TCCEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHH
T ss_pred HHhccc-CceEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHH
Confidence 998754 7889999998866544444433 37999999999999997652 1257889999999999999877433332
Q ss_pred -HHHHh-c---CccceeEEEeccCCh-----------HHHHHHHHHh------------------ccceEEEeecCCCcc
Q 003100 557 -NIVDC-L---PRRRQSLLFSATMPK-----------EVRRISQLVL------------------KREHTYIDTVGLGSV 602 (848)
Q Consensus 557 -~Il~~-l---~~~~Q~ll~SATl~~-----------~v~~l~~~~l------------------~~~~~~i~~~~~~~~ 602 (848)
.++.. + .+..|+++||||++. .+..+...+. ..+............
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 232 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcC
Confidence 22221 1 356899999999953 1112221111 001100000000000
Q ss_pred cc-------------------------------ccee---eccc------------------------------------
Q 003100 603 ET-------------------------------PVKI---KQSC------------------------------------ 612 (848)
Q Consensus 603 ~~-------------------------------~~~v---~q~~------------------------------------ 612 (848)
.. .... .+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (556)
T 4a2p_A 233 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0000
Q ss_pred -----------------------------------------------------ccCChhhHHHHHHHHHHHHhhCCCCce
Q 003100 613 -----------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDYK 639 (848)
Q Consensus 613 -----------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~k 639 (848)
.......|+..|..+|...+....+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k 392 (556)
T 4a2p_A 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 392 (556)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCce
Confidence 000013466667777766654456789
Q ss_pred EEEEEecchHHHHHHHHHHHh------------ccceeeecCCcchhhHHHHHHHHhc-CCceEEEecCCccccccCCCC
Q 003100 640 VIVFCSTGMVTSLLYLLLREM------------KMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDV 706 (848)
Q Consensus 640 iLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~V 706 (848)
+||||+++.+++.++..|... |..+..+||+|++.+|..+++.|++ |.+.|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999875 5566677888999999999999999 999999999999999999999
Q ss_pred CeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 707 TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 707 ~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
++||+||+|+++..|+||+|| ||. +.|.+++|+++.+
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 999999999999999999999 998 7899999998865
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-42 Score=421.27 Aligned_cols=332 Identities=20% Similarity=0.266 Sum_probs=262.8
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 380 RFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 380 ~f~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
+|++++ +++.+.+.+.+.||..|+++|.++++.++++++++++||||||||++|.+|+++.+... .+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------Cc
Confidence 588888 99999999999999999999999999999999999999999999999999999887532 26
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++|+++||.|+++.+..+.. . ++.+..++|+...... . ...++|+|+||++|..++.+.. ..+.++++
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~ 141 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE--H--LGDCDIIVTTSEKADSLIRNRA---SWIKAVSC 141 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS--C--STTCSEEEEEHHHHHHHHHTTC---SGGGGCCE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh--h--ccCCCEEEECHHHHHHHHHcCh---hHHhhcCE
Confidence 99999999999999999854432 2 7889999998765432 1 1358999999999999988752 33678999
Q ss_pred EEEecccccccccchhhHHHHHHhc---CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccc-
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCL- 613 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l---~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~- 613 (848)
|||||||++.++++...+..++..+ .+..|+|+||||+++ ...++.++. .+ .+.... .+..+...+.
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~--~~~~~~-----r~~~l~~~~~~ 212 (702)
T 2p6r_A 142 LVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-AD--YYVSDW-----RPVPLVEGVLC 212 (702)
T ss_dssp EEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CE--EEECCC-----CSSCEEEEEEC
T ss_pred EEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CC--cccCCC-----CCccceEEEee
Confidence 9999999999988888888877665 568999999999986 455665543 21 121111 1111111111
Q ss_pred -----cCChh-------hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh---------------------
Q 003100 614 -----VAPHE-------LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------------------- 660 (848)
Q Consensus 614 -----~~~~~-------~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--------------------- 660 (848)
..... .....+...+. .++++||||++++.++.++..|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~ 286 (702)
T 2p6r_A 213 EGTLELFDGAFSTSRRVKFEELVEECVA------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGE 286 (702)
T ss_dssp SSEEEEEETTEEEEEECCHHHHHHHHHH------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSH
T ss_pred CCeeeccCcchhhhhhhhHHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccc
Confidence 00000 13444444332 4679999999999999999988753
Q ss_pred ---------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----cC---CCCChhHHHHH
Q 003100 661 ---------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG---IPPDREQYIHR 724 (848)
Q Consensus 661 ---------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----yd---~P~s~~~yiQR 724 (848)
+..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||
T Consensus 287 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr 366 (702)
T 2p6r_A 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQM 366 (702)
T ss_dssp HHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHH
T ss_pred ccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHH
Confidence 246889999999999999999999999999999999999999999999998 66 78999999999
Q ss_pred hhccCCCC--CCceEEEEeCcchh
Q 003100 725 LGRTGREG--KEGEGVLLLAPWEE 746 (848)
Q Consensus 725 iGRaGR~G--~~G~~i~l~~~~e~ 746 (848)
+|||||.| ..|.|++++++.+.
T Consensus 367 ~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 367 AGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HTTBSCTTTCSCEEEEEECCGGGH
T ss_pred hhhcCCCCCCCCceEEEEecCccH
Confidence 99999988 57999999998763
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.7e-43 Score=421.10 Aligned_cols=346 Identities=17% Similarity=0.188 Sum_probs=223.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 391 ~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
..+|..+||..|+++|.++++.+++|+++|+++|||+|||++|++|+++.+...... .+.++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHH
Confidence 356778999999999999999999999999999999999999999999988764321 12379999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc
Q 003100 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550 (848)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g 550 (848)
+++.+.+++.. .++.+..++|+.........+.. +++|+|+||++|.+.+.... ...+.++++|||||||++.+..
T Consensus 77 ~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 77 NKSVFSKYFER-HGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp HHHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTC
T ss_pred HHHHHHHHhcc-CCceEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcc
Confidence 99999999754 37889999998866544444433 48999999999999998652 1157789999999999988654
Q ss_pred -chhhHHHHHHh-----cCccceeEEEeccCC--------hHHHHHHHHHhc---------------------cceEEEe
Q 003100 551 -FRKDVENIVDC-----LPRRRQSLLFSATMP--------KEVRRISQLVLK---------------------REHTYID 595 (848)
Q Consensus 551 -f~~~l~~Il~~-----l~~~~Q~ll~SATl~--------~~v~~l~~~~l~---------------------~~~~~i~ 595 (848)
+...+...+.. .++..++++||||+. ..+..+...... .+.....
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 22222222222 246689999999996 122222222110 0100000
Q ss_pred ecCCCccc------------------------------------------------------------------------
Q 003100 596 TVGLGSVE------------------------------------------------------------------------ 603 (848)
Q Consensus 596 ~~~~~~~~------------------------------------------------------------------------ 603 (848)
........
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 00000000
Q ss_pred ------------------------------------ccceeeccccc-------------C---ChhhHHHHHHHHHHHH
Q 003100 604 ------------------------------------TPVKIKQSCLV-------------A---PHELHFQILHHLLKEH 631 (848)
Q Consensus 604 ------------------------------------~~~~v~q~~~~-------------~---~~~~k~~~L~~lL~~~ 631 (848)
....+.+.+.. . ....++..+..++...
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 00000000000 0 1345677777888776
Q ss_pred hhCCCCceEEEEEecchHHHHHHHHHHHhc----cceeee--------cCCcchhhHHHHHHHHhc-CCceEEEecCCcc
Q 003100 632 ILGTPDYKVIVFCSTGMVTSLLYLLLREMK----MNVREM--------YSRKPQLYRDRISEEFRA-SKRLILVTSDVSA 698 (848)
Q Consensus 632 ~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~----~~v~~l--------hg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~ 698 (848)
+...++.++||||+++..++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+++|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 655567899999999999999999999987 888888 559999999999999998 9999999999999
Q ss_pred ccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhH
Q 003100 699 RGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYF 748 (848)
Q Consensus 699 rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~ 748 (848)
+|||+|+|++||+||+|.++.+|+||+|| ||. +.|.|++|++..+...
T Consensus 473 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999999999 997 7899999998766533
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.4e-42 Score=406.65 Aligned_cols=336 Identities=19% Similarity=0.211 Sum_probs=229.0
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+++|.++++.+++|+++|+++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.+++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999999988876432 1134799999999999999999999987
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccccccc-chhhHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKDVENIV 559 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-f~~~l~~Il 559 (848)
.. ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++.+.+ +...+...+
T Consensus 78 ~~-~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 153 (555)
T 3tbk_A 78 RL-GYNIASISGATSDSVSVQHIIE-DNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYL 153 (555)
T ss_dssp TT-TCCEEEECTTTGGGSCHHHHHH-HCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHH
T ss_pred cC-CcEEEEEcCCCcchhhHHHHhc-CCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHH
Confidence 54 7889999999876544444433 37999999999999997753 1256789999999999998775 333333333
Q ss_pred Hhc-----CccceeEEEeccCChH--------HHHHHHHHhccceEEEeecCCC------ccccccee----e-------
Q 003100 560 DCL-----PRRRQSLLFSATMPKE--------VRRISQLVLKREHTYIDTVGLG------SVETPVKI----K------- 609 (848)
Q Consensus 560 ~~l-----~~~~Q~ll~SATl~~~--------v~~l~~~~l~~~~~~i~~~~~~------~~~~~~~v----~------- 609 (848)
... .+..|+++||||++.. ...+...........+...... ....+... .
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChH
Confidence 322 2457999999999542 1111111100010111110000 00000000 0
Q ss_pred ------------c---------------------------cc--------------------------------------
Q 003100 610 ------------Q---------------------------SC-------------------------------------- 612 (848)
Q Consensus 610 ------------q---------------------------~~-------------------------------------- 612 (848)
. ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred ---------------------------------------------------ccCChhhHHHHHHHHHHHHhhCCCCceEE
Q 003100 613 ---------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDYKVI 641 (848)
Q Consensus 613 ---------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiL 641 (848)
.......|...+..+|...+...++.++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~l 393 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTI 393 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEE
Confidence 00001346667777777766555678999
Q ss_pred EEEecchHHHHHHHHHHHhc------------cceeeecCCcchhhHHHHHHHHhc-CCceEEEecCCccccccCCCCCe
Q 003100 642 VFCSTGMVTSLLYLLLREMK------------MNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPDVTS 708 (848)
Q Consensus 642 VF~~s~~~a~~l~~~L~~~~------------~~v~~lhg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~V~~ 708 (848)
|||+++.+++.++..|...+ .....+||+|++.+|..+++.|++ |.+.|||||+++++|||+|+|++
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSE
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCE
Confidence 99999999999999999864 345566679999999999999999 99999999999999999999999
Q ss_pred eEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhH
Q 003100 709 VVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYF 748 (848)
Q Consensus 709 VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~ 748 (848)
||+||+|+++..|+||+|| ||. +.|.+++|+++.+...
T Consensus 474 VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 474 VILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIE 511 (555)
T ss_dssp EEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHH
T ss_pred EEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHH
Confidence 9999999999999999999 998 8999999999876543
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.7e-42 Score=431.27 Aligned_cols=281 Identities=20% Similarity=0.268 Sum_probs=227.8
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..|| .||++|.++|+.+++|+|++++||||||||++|++|++..+. .+.++|||+||++||.|+++.+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHH
Confidence 4688 599999999999999999999999999999988888776651 1347999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcch---hHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc-----
Q 003100 476 IALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL----- 547 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~---~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll----- 547 (848)
.++. ..++.+..++|+... ..+...+..+.++|+|+||++|++++.. +.+.++++|||||||++.
T Consensus 142 ~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 142 QKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHH
T ss_pred HHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCcccccccc
Confidence 9965 458899999999887 5555666666699999999999988864 456789999999997654
Q ss_pred -----c-ccchhh-HHHHHHhcC-----------ccceeEEEecc-CChHHHH-HHHHHhccceEEEeecCCCcccccce
Q 003100 548 -----D-LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKEVRR-ISQLVLKREHTYIDTVGLGSVETPVK 607 (848)
Q Consensus 548 -----~-~gf~~~-l~~Il~~l~-----------~~~Q~ll~SAT-l~~~v~~-l~~~~l~~~~~~i~~~~~~~~~~~~~ 607 (848)
+ +||... +..++..++ +.+|+++|||| .|..+.. +....+. +... ........
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~--~~~~~~~~ 287 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--RLVSVARN 287 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCC--BCCCCCCC
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEec--cCCCCcCC
Confidence 4 888888 889998887 78999999999 5655442 2222222 1111 11223445
Q ss_pred eecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcccee-eecCCcchhhHHHHHHHHhcC
Q 003100 608 IKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVR-EMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 608 v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~-~lhg~ls~~~R~~i~~~F~~G 686 (848)
+.+.++.+ .+...+..++... ++++||||+++..++.++..|...++.+. .+||. |.+ ++.|++|
T Consensus 288 i~~~~~~~---~k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G 353 (1104)
T 4ddu_A 288 ITHVRISS---RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVG 353 (1104)
T ss_dssp EEEEEESC---CCHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHT
T ss_pred ceeEEEec---CHHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCC
Confidence 66666555 3455566666652 37999999999999999999999999998 99993 555 9999999
Q ss_pred CceEEEe----cCCccccccCCC-CCeeEEcCCCC
Q 003100 687 KRLILVT----SDVSARGMDYPD-VTSVVQVGIPP 716 (848)
Q Consensus 687 ~~~VLVa----Tdvl~rGlDip~-V~~VI~yd~P~ 716 (848)
+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 354 ~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 354 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999 999999999999 99999999998
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2e-41 Score=415.75 Aligned_cols=338 Identities=16% Similarity=0.177 Sum_probs=208.7
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
-+|+..|+++|.++|+.++.|+++|+++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999988875421 11347999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhh-
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD- 554 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~- 554 (848)
.+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++.+.+....
T Consensus 317 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHHHGGG-TCCEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred HHhcccC-CceEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHH
Confidence 9998754 7889999999876544444433 48999999999999997652 12577899999999999987653222
Q ss_pred HHHHHHhc----CccceeEEEeccCCh-----------HHHHHHHHHh------------------ccceEEEeecCCCc
Q 003100 555 VENIVDCL----PRRRQSLLFSATMPK-----------EVRRISQLVL------------------KREHTYIDTVGLGS 601 (848)
Q Consensus 555 l~~Il~~l----~~~~Q~ll~SATl~~-----------~v~~l~~~~l------------------~~~~~~i~~~~~~~ 601 (848)
+..++... .+..|+++||||+.. .+..+...+. ..+...........
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCS
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCC
Confidence 22232221 456899999999952 2222221111 10110000000000
Q ss_pred ccc-------------------------------ccee---eccc-----------------------------------
Q 003100 602 VET-------------------------------PVKI---KQSC----------------------------------- 612 (848)
Q Consensus 602 ~~~-------------------------------~~~v---~q~~----------------------------------- 612 (848)
... .... .+..
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 0000 0000
Q ss_pred ------------------------------------------------------ccCChhhHHHHHHHHHHHHhhCCCCc
Q 003100 613 ------------------------------------------------------LVAPHELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 613 ------------------------------------------------------~~~~~~~k~~~L~~lL~~~~~~~~~~ 638 (848)
.......|+..|..+|...+...++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00001335666677777655555678
Q ss_pred eEEEEEecchHHHHHHHHHHHh------------ccceeeecCCcchhhHHHHHHHHhc-CCceEEEecCCccccccCCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLREM------------KMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPD 705 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~ 705 (848)
++||||+++..++.++..|... |..+..+||+|++.+|..+++.|++ |.+.|||||+++++|||+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~ 712 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CC
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchh
Confidence 9999999999999999999873 5667788999999999999999999 99999999999999999999
Q ss_pred CCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 706 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 706 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
|++||+||+|+|+..|+||+|| ||. +.|.|++|+++.+
T Consensus 713 v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp CSEEEEESCCSCHHHHHTC---------CCCEEEEECCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 9999999999999999999999 998 7999999998765
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.4e-41 Score=398.63 Aligned_cols=328 Identities=19% Similarity=0.198 Sum_probs=230.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
+|. .|+++|..+++.+++|+ |+.++||+|||++|++|++...+. +..++||+||++||.|+++++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 575 79999999999999998 999999999999999999865432 2358999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEecccccc-ccc-
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DLG- 550 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll-~~g- 550 (848)
.++.+. ++.+.+++||.+... +.+. .+++|+|+||++| .++|.....+ ...++++.++||||||+|+ +.+
T Consensus 137 ~l~~~l-gl~v~~i~GG~~~~~--r~~~-~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 137 PLFEFL-GLTVGINLPGMPAPA--KREA-YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHT-TCCEEECCTTCCHHH--HHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHhc-CCeEEEEeCCCCHHH--HHHh-cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 998876 899999999987542 2222 2489999999999 7888765211 2456899999999999998 543
Q ss_pred --------------chhhHHHHHHhcCc--------------------cceeE------------------------EEe
Q 003100 551 --------------FRKDVENIVDCLPR--------------------RRQSL------------------------LFS 572 (848)
Q Consensus 551 --------------f~~~l~~Il~~l~~--------------------~~Q~l------------------------l~S 572 (848)
|...+..|+..+++ .+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 56788888888874 56664 899
Q ss_pred ccCChHHHHHH-----HHHhccceEE---------Eee------------------------cCC-Ccccccceeec---
Q 003100 573 ATMPKEVRRIS-----QLVLKREHTY---------IDT------------------------VGL-GSVETPVKIKQ--- 610 (848)
Q Consensus 573 ATl~~~v~~l~-----~~~l~~~~~~---------i~~------------------------~~~-~~~~~~~~v~q--- 610 (848)
||.+..+..+. ..++..+..+ ++. +.. ....+...+.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 99764222221 1111111100 000 000 00001111221
Q ss_pred --------------------------------------------ccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEec
Q 003100 611 --------------------------------------------SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCST 646 (848)
Q Consensus 611 --------------------------------------------~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s 646 (848)
.++......|+..+...+.... ..+.++||||+|
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~s 450 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTIS 450 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESS
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECc
Confidence 1244567788888888886543 235689999999
Q ss_pred chHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCC--------------------
Q 003100 647 GMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDV-------------------- 706 (848)
Q Consensus 647 ~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V-------------------- 706 (848)
+..++.++..|...|+.+..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 9999999999999999999999999888888888888888 699999999999999974
Q ss_pred -----------------CeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 707 -----------------TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 707 -----------------~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
.+||+|+.|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998774
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=413.90 Aligned_cols=324 Identities=18% Similarity=0.203 Sum_probs=252.7
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..+|. |+++|.++|+.++++++++++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHH
Confidence 35676 999999999999999999999999999999999999877642 237999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhH
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l 555 (848)
.+++. .+.+++|+.... ..++|+|+||++|..++.+. ...+.++++|||||||++.++++...+
T Consensus 150 ~~~~~-----~vglltGd~~~~--------~~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 150 LAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp HHHHS-----CEEEECSSCEEC--------TTCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred HHHhC-----CEEEEeCCCccC--------CCCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEechhhhcccchhHHH
Confidence 99874 578889987654 23799999999999988765 345788999999999999999999999
Q ss_pred HHHHHhcCccceeEEEeccCChHHHHHHHHH---hccceEEEeecCCCcccccceeecccccC---------Chh-----
Q 003100 556 ENIVDCLPRRRQSLLFSATMPKEVRRISQLV---LKREHTYIDTVGLGSVETPVKIKQSCLVA---------PHE----- 618 (848)
Q Consensus 556 ~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~---l~~~~~~i~~~~~~~~~~~~~v~q~~~~~---------~~~----- 618 (848)
..++..+++..|+|+||||+++... ++.++ ...+..++.... .+..+.++++.. ...
T Consensus 214 e~il~~l~~~~~il~LSATi~n~~e-~a~~l~~~~~~~~~vi~~~~-----rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIPNAME-FAEWICKIHSQPCHIVYTNF-----RPTPLQHYLFPAHGDGIYLVVDEKSTFRE 287 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHH-HHHHHHHHHTSCEEEEEECC-----CSSCEEEEEEETTSSCCEEEECTTCCBCH
T ss_pred HHHHHhcCCCCeEEEEcCCCCCHHH-HHHHHHhhcCCCeEEEecCC-----CcccceEEEEecCCcceeeeeccccccch
Confidence 9999999999999999999987543 33332 222333332211 111222211110 000
Q ss_pred ------------------------h------H--------HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh
Q 003100 619 ------------------------L------H--------FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM 660 (848)
Q Consensus 619 ------------------------~------k--------~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~ 660 (848)
. + ...+..++.... .....++||||+++..|+.++..|...
T Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~-~~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 288 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW-KKKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHHHHTCC------------------------------CHHHHHHHHHH-HHTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 0 111222222221 124458999999999999999888653
Q ss_pred cc---------------------------------------ceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccc
Q 003100 661 KM---------------------------------------NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGM 701 (848)
Q Consensus 661 ~~---------------------------------------~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGl 701 (848)
++ .+..+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 22 378899999999999999999999999999999999999
Q ss_pred cCCCCCeeEE----cCC----CCChhHHHHHhhccCCCCC--CceEEEEeCcc-hhhHHHHhcc
Q 003100 702 DYPDVTSVVQ----VGI----PPDREQYIHRLGRTGREGK--EGEGVLLLAPW-EEYFLDDLKD 754 (848)
Q Consensus 702 Dip~V~~VI~----yd~----P~s~~~yiQRiGRaGR~G~--~G~~i~l~~~~-e~~~l~~L~~ 754 (848)
|+|++++||+ ||. |.++.+|+||+|||||.|. .|.|++++.+. +...+..+..
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 9999999999 999 8999999999999999996 59999999875 5555555533
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-40 Score=377.73 Aligned_cols=326 Identities=21% Similarity=0.250 Sum_probs=247.8
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+++|.++++.++.+ ++|++++||+|||++++++++..+... +.++|||+||++|+.|+.+++.+++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 5999999999999999 999999999999999999998877521 23699999999999999999999863
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
. +...+..++|+........... .++|+|+||+.|...+... ...+.++++|||||||++.+......+...+.
T Consensus 78 ~-~~~~v~~~~g~~~~~~~~~~~~--~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 78 L-PPEKIVALTGEKSPEERSKAWA--RAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp S-CGGGEEEECSCSCHHHHHHHHH--HCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred c-chhheEEeeCCcchhhhhhhcc--CCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHH
Confidence 2 3457888888877654333222 3799999999999988765 34577899999999999986554555555666
Q ss_pred hcCccceeEEEeccCChHHHHHHHHH--hccceEEEeecCCCccc--------------ccceee---------------
Q 003100 561 CLPRRRQSLLFSATMPKEVRRISQLV--LKREHTYIDTVGLGSVE--------------TPVKIK--------------- 609 (848)
Q Consensus 561 ~l~~~~Q~ll~SATl~~~v~~l~~~~--l~~~~~~i~~~~~~~~~--------------~~~~v~--------------- 609 (848)
...+..++++||||+......+...+ +......+......... .+....
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999985433333222 11011100000000000 000000
Q ss_pred -------------------------------------------------------------------cc-----------
Q 003100 610 -------------------------------------------------------------------QS----------- 611 (848)
Q Consensus 610 -------------------------------------------------------------------q~----------- 611 (848)
.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence 00
Q ss_pred ------------------------cccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeee
Q 003100 612 ------------------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREM 667 (848)
Q Consensus 612 ------------------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~l 667 (848)
........|+..+..+|...+...++.++||||++...++.++..|...++.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 00002334566677777765543567899999999999999999999999999999
Q ss_pred cC--------CcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEE
Q 003100 668 YS--------RKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVL 739 (848)
Q Consensus 668 hg--------~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~ 739 (848)
|| ++++.+|..+++.|++|...|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred EeCcc
Q 003100 740 LLAPW 744 (848)
Q Consensus 740 l~~~~ 744 (848)
|+++.
T Consensus 471 l~~~~ 475 (494)
T 1wp9_A 471 LMAKG 475 (494)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99875
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.5e-39 Score=383.87 Aligned_cols=329 Identities=18% Similarity=0.197 Sum_probs=257.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
.+|+ .||++|..+++.+++|+ |+.++||+|||++|++|++...+.. ..++||+||++||.|+++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHH
Confidence 4798 89999999999999998 9999999999999999997554321 25999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccC---cccccCCccEEEEecccccc-c--
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-D-- 548 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~---~~~~l~~l~~lVIDEAH~ll-~-- 548 (848)
..++.+. ++.+.+++||.+....... .+++|+|+||++| .++|..... ....++.+.++||||||+|+ +
T Consensus 173 ~~l~~~l-GLsv~~i~gg~~~~~r~~~---y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 173 GRVHRFL-GLQVGVILATMTPDERRVA---YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHT-TCCEEECCTTCCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 9998875 8999999999875432222 2489999999999 788876521 13557789999999999998 4
Q ss_pred -------------ccchhhHHHHHHhcC---------ccceeE-----------------EEeccCChHHHHHH-----H
Q 003100 549 -------------LGFRKDVENIVDCLP---------RRRQSL-----------------LFSATMPKEVRRIS-----Q 584 (848)
Q Consensus 549 -------------~gf~~~l~~Il~~l~---------~~~Q~l-----------------l~SATl~~~v~~l~-----~ 584 (848)
++|...+..|+..++ +.+|++ +||||.+.-+..+. .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 358889999999998 688998 99999875333322 2
Q ss_pred HHhccceEE---------Eeec----------------------CC---Ccccccceee---------------------
Q 003100 585 LVLKREHTY---------IDTV----------------------GL---GSVETPVKIK--------------------- 609 (848)
Q Consensus 585 ~~l~~~~~~---------i~~~----------------------~~---~~~~~~~~v~--------------------- 609 (848)
.++..+..+ ++.. +. ....+...+.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 222222111 1100 00 0000111111
Q ss_pred --------------------------cccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccc
Q 003100 610 --------------------------QSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMN 663 (848)
Q Consensus 610 --------------------------q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~ 663 (848)
+.++......|+..+...+..... .+.++||||+|+..++.++..|...|+.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 112345567788888887765432 3458999999999999999999999999
Q ss_pred eeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCC-------------------------------------
Q 003100 664 VREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDV------------------------------------- 706 (848)
Q Consensus 664 v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V------------------------------------- 706 (848)
+..+||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999998877777777788777 699999999999999975
Q ss_pred ---------------CeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 707 ---------------TSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 707 ---------------~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
.+||+|+.|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998764
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-39 Score=404.70 Aligned_cols=319 Identities=16% Similarity=0.222 Sum_probs=246.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.+|. |+++|.++|+.+++|++++++||||||||++|++|+...+.. +.++||++||++|+.|+++.+.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHH
Confidence 4565 899999999999999999999999999999999998766532 2379999999999999999998
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
+++. ++.+..++|+.... ..++|+|+||++|..++... ...+.++++|||||||++.+++|...+.
T Consensus 104 ~~~~---~~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 104 ETFD---DVNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TTC-----CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HHcC---CCeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECcccccccchHHHHH
Confidence 8653 67899999987643 23799999999999998766 3456789999999999999999999999
Q ss_pred HHHHhcCccceeEEEeccCChHHHHHHHHHhc---cceEEEeecCCCcccccceeecc----------------------
Q 003100 557 NIVDCLPRRRQSLLFSATMPKEVRRISQLVLK---REHTYIDTVGLGSVETPVKIKQS---------------------- 611 (848)
Q Consensus 557 ~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~---~~~~~i~~~~~~~~~~~~~v~q~---------------------- 611 (848)
.++..+++..|+|++|||+++.. .+..++.. .+..++.... .+.++.++
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~-----r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~ 243 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPK-----RPVPLEINIWAKKELIPVINQNSEFLEANF 243 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS-----CSSCEEEEEEETTEEEEEECTTCCBCHHHH
T ss_pred HHHHhcccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCC-----CCccceEEEecCCcchhcccchhhhhHHHH
Confidence 99999999999999999998765 35544432 1222221111 01111110
Q ss_pred -----------------------------------------------------------------------cccCChhhH
Q 003100 612 -----------------------------------------------------------------------CLVAPHELH 620 (848)
Q Consensus 612 -----------------------------------------------------------------------~~~~~~~~k 620 (848)
+.......+
T Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (997)
T 4a4z_A 244 RKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT 323 (997)
T ss_dssp HHHHHHHC-----------------------------------------------------------------CCCCTTH
T ss_pred HHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhH
Confidence 001112223
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhcc--------------------------------------
Q 003100 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKM-------------------------------------- 662 (848)
Q Consensus 621 ~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~-------------------------------------- 662 (848)
+..+...+.. ....++||||+++..|+.++..|...++
T Consensus 324 ~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 324 WPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp HHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 3344444443 3557999999999999999999866444
Q ss_pred -ceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCC---------ChhHHHHHhhccCCCC
Q 003100 663 -NVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPP---------DREQYIHRLGRTGREG 732 (848)
Q Consensus 663 -~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~---------s~~~yiQRiGRaGR~G 732 (848)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. ++.+|+||+|||||.|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G 478 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCC
Confidence 5799999999999999999999999999999999999999999 5566666655 9999999999999998
Q ss_pred --CCceEEEEeC--cchhhHHHHh
Q 003100 733 --KEGEGVLLLA--PWEEYFLDDL 752 (848)
Q Consensus 733 --~~G~~i~l~~--~~e~~~l~~L 752 (848)
..|.|++++. +.+...++.+
T Consensus 479 ~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 479 LDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp TCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CCcceEEEEecCCCcchHHHHHHH
Confidence 5688888873 2344445444
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.1e-41 Score=420.86 Aligned_cols=319 Identities=20% Similarity=0.252 Sum_probs=244.9
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH
Q 003100 392 KALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (848)
Q Consensus 392 ~~L~-~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q 470 (848)
+.+. .+||. | ++|.++|+.+++|+|++++||||||||+ |++|++..+... +.++|||+||++||.|
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHH
Confidence 4444 48999 9 9999999999999999999999999998 999999887642 2479999999999999
Q ss_pred HHHHHHHHhhcCCCc----eEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 471 IAAEAIALLKNHDGI----GVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 471 i~~~l~~l~~~~~~i----~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
+++.+.+++... ++ .+..++|+...... ...+.. ++|+|+||++|++++.+ +.++++||||||
T Consensus 115 ~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~-------L~~l~~lViDEa 184 (1054)
T 1gku_B 115 AAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE-------LGHFDFIFVDDV 184 (1054)
T ss_dssp HHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT-------SCCCSEEEESCH
T ss_pred HHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH-------hccCCEEEEeCh
Confidence 999999998764 56 89999999887653 233333 89999999999987754 568999999999
Q ss_pred cccccccchhhHHHHHHhc-----------CccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccc
Q 003100 544 DHLLDLGFRKDVENIVDCL-----------PRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSC 612 (848)
Q Consensus 544 H~ll~~gf~~~l~~Il~~l-----------~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~ 612 (848)
|++++ +...+..++..+ +..+|+++||||++.. ..+...++..... +... ........+.+.+
T Consensus 185 h~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~-i~v~--~~~~~~~~i~~~~ 258 (1054)
T 1gku_B 185 DAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLN-FDIG--SSRITVRNVEDVA 258 (1054)
T ss_dssp HHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHC-CCCS--CCEECCCCEEEEE
T ss_pred hhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceE-EEcc--CcccCcCCceEEE
Confidence 99998 467777777665 4568999999999887 4333333332211 1111 1111223344444
Q ss_pred ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEE
Q 003100 613 LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV 692 (848)
Q Consensus 613 ~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLV 692 (848)
+ ...+...+..++... +.++||||+++..|+.++..|... +.+..+||++ ..+++.|++|+.+|||
T Consensus 259 ~---~~~k~~~L~~ll~~~-----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLV 324 (1054)
T 1gku_B 259 V---NDESISTLSSILEKL-----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLI 324 (1054)
T ss_dssp E---SCCCTTTTHHHHTTS-----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEE
T ss_pred e---chhHHHHHHHHHhhc-----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEE
Confidence 4 233444555555432 568999999999999999999988 9999999998 4788999999999999
Q ss_pred e----cCCccccccCCCC-CeeEEcCCC----------------------------------------------------
Q 003100 693 T----SDVSARGMDYPDV-TSVVQVGIP---------------------------------------------------- 715 (848)
Q Consensus 693 a----Tdvl~rGlDip~V-~~VI~yd~P---------------------------------------------------- 715 (848)
| |+++++|||+|+| ++||+||+|
T Consensus 325 aTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1054)
T 1gku_B 325 GTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVM 404 (1054)
T ss_dssp EECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHH
T ss_pred EecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 9999999999996 999999999
Q ss_pred -------------------CChhHHHHHhhccCCCCCCc--eEEEEeCcchhhHHHHhc
Q 003100 716 -------------------PDREQYIHRLGRTGREGKEG--EGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 716 -------------------~s~~~yiQRiGRaGR~G~~G--~~i~l~~~~e~~~l~~L~ 753 (848)
.+..+|+||+|||||.|..| .+++|+...+..+++.|+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~ 463 (1054)
T 1gku_B 405 GKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFI 463 (1054)
T ss_dssp TTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHH
T ss_pred ccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHH
Confidence 78999999999999987765 477777776666555443
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-40 Score=409.43 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=207.5
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 396 ~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
-.|+..|+++|.++|+.+++|+++|++++||+|||++|++|+++.+..... ..+.++|||+||++|+.|++..+
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 357888999999999999999999999999999999999999877654321 11347999999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc-hhh
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF-RKD 554 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf-~~~ 554 (848)
.+++... ++.+..++|+.........+.. +++|+|+||++|.+++.... ...+.++++|||||||++...+. ...
T Consensus 317 ~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHHTT-TCCEEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHhccc-CceEEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHH
Confidence 9998754 7889999999865544333332 37999999999999998652 12567899999999999987652 222
Q ss_pred HHHHHHhc----CccceeEEEeccCCh-----------HHHHHHHHHh------------------ccceEEEeecCCCc
Q 003100 555 VENIVDCL----PRRRQSLLFSATMPK-----------EVRRISQLVL------------------KREHTYIDTVGLGS 601 (848)
Q Consensus 555 l~~Il~~l----~~~~Q~ll~SATl~~-----------~v~~l~~~~l------------------~~~~~~i~~~~~~~ 601 (848)
+..++... .+..|+++||||+.. .+..+...+- ..+...........
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 472 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCS
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccccc
Confidence 22333221 456899999999952 1222211111 11111110000000
Q ss_pred ccc----------------------------c---cee---ecccc----------------------------------
Q 003100 602 VET----------------------------P---VKI---KQSCL---------------------------------- 613 (848)
Q Consensus 602 ~~~----------------------------~---~~v---~q~~~---------------------------------- 613 (848)
... + ... .+...
T Consensus 473 ~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 552 (936)
T 4a2w_A 473 HNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 0 000 00000
Q ss_pred -------------------------------------------------------cCChhhHHHHHHHHHHHHhhCCCCc
Q 003100 614 -------------------------------------------------------VAPHELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 614 -------------------------------------------------------~~~~~~k~~~L~~lL~~~~~~~~~~ 638 (848)
......|+..|..+|...+....+.
T Consensus 553 ~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (936)
T 4a2w_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (936)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTC
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0001335555666666655455678
Q ss_pred eEEEEEecchHHHHHHHHHHHh------------ccceeeecCCcchhhHHHHHHHHhc-CCceEEEecCCccccccCCC
Q 003100 639 KVIVFCSTGMVTSLLYLLLREM------------KMNVREMYSRKPQLYRDRISEEFRA-SKRLILVTSDVSARGMDYPD 705 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~ls~~~R~~i~~~F~~-G~~~VLVaTdvl~rGlDip~ 705 (848)
++||||+++.+++.++..|... |..+..+||+|++.+|..+++.|++ |.+.|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 9999999999999999999986 5566777999999999999999999 99999999999999999999
Q ss_pred CCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 706 VTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 706 V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
|++||+||+|+|+..|+||+|| ||. ..|.+++|++..+
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 9999999999999999999999 998 7899999998754
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=403.34 Aligned_cols=332 Identities=18% Similarity=0.234 Sum_probs=226.4
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH-HHHHHHHh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI-AAEAIALL 479 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi-~~~l~~l~ 479 (848)
.|+++|.++++.+++|+++|+++|||+|||++|++|+++.+...... ..+.++|||+||++|+.|+ ++++.+++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 59999999999999999999999999999999999999988765321 0113689999999999999 99999988
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc---CcccccCCccEEEEecccccccccchhh-H
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS---GLSVRLMGLKMLVLDEADHLLDLGFRKD-V 555 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~---~~~~~l~~l~~lVIDEAH~ll~~gf~~~-l 555 (848)
.. ++.+..++|+.........+. ..++|+|+||++|.+.+.+.. ...+.+..+++|||||||++...++... +
T Consensus 82 ~~--~~~v~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TT--TSCEEEEC----CCCCHHHHH-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred Cc--CceEEEEeCCcchhhHHHhhh-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 64 478999999887654444443 348999999999998884321 1134567899999999999865443333 3
Q ss_pred HHHHHhc-------------CccceeEEEeccCChH-----------HHHHHHHHhc------------------cceEE
Q 003100 556 ENIVDCL-------------PRRRQSLLFSATMPKE-----------VRRISQLVLK------------------REHTY 593 (848)
Q Consensus 556 ~~Il~~l-------------~~~~Q~ll~SATl~~~-----------v~~l~~~~l~------------------~~~~~ 593 (848)
..++... .+..|++++|||+... +..+...+.. .+...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 3222211 1567999999999862 1212111111 11111
Q ss_pred EeecCCCccccc--------c---------eeec----ccc---------------------------------------
Q 003100 594 IDTVGLGSVETP--------V---------KIKQ----SCL--------------------------------------- 613 (848)
Q Consensus 594 i~~~~~~~~~~~--------~---------~v~q----~~~--------------------------------------- 613 (848)
+........... . .... .+.
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 110000000000 0 0000 000
Q ss_pred --------------------------------cC-------------------------ChhhHHHHHHHHHHHHhhCCC
Q 003100 614 --------------------------------VA-------------------------PHELHFQILHHLLKEHILGTP 636 (848)
Q Consensus 614 --------------------------------~~-------------------------~~~~k~~~L~~lL~~~~~~~~ 636 (848)
.. ....++..|..+|..++...+
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~ 398 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE 398 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 00 011122233444554443334
Q ss_pred -CceEEEEEecchHHHHHHHHHHHh------ccceeeecCC--------cchhhHHHHHHHHhcCCceEEEecCCccccc
Q 003100 637 -DYKVIVFCSTGMVTSLLYLLLREM------KMNVREMYSR--------KPQLYRDRISEEFRASKRLILVTSDVSARGM 701 (848)
Q Consensus 637 -~~kiLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~--------ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGl 701 (848)
+.++||||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|++.|||||+++++||
T Consensus 399 ~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 399 ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 789999999999999999999987 8999999999 9999999999999999999999999999999
Q ss_pred cCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCc
Q 003100 702 DYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 702 Dip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
|+|+|++||+||+|+|+..|+||+|||||.| .+++++.+
T Consensus 479 Dip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 479 DIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred ccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999999999986644 55555544
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.8e-39 Score=413.44 Aligned_cols=346 Identities=15% Similarity=0.198 Sum_probs=263.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 386 ISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
+.....+++...+|..++|+|.++++.++. +++++|+||||||||++|.+|+++.+.+.. +.++|||+||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEEEEcCh
Confidence 456678888888999999999999999976 568999999999999999999999987642 2369999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 465 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
|+||.|+++.+.+.+....++.|..++|+...... .+. .++|+|||||++..++.+... ...+.++++|||||+|
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~--~~~IiV~TPEkld~llr~~~~-~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--LLG--KGNIIISTPEKWDILSRRWKQ-RKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--HHH--HCSEEEECHHHHHHHHTTTTT-CHHHHSCSEEEECCGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh--hcC--CCCEEEECHHHHHHHHhCccc-ccccceeeEEEeechh
Confidence 99999999999887766568899999998764322 222 379999999998777765422 2346789999999999
Q ss_pred ccccccchhhHHHHHH-------hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCC-
Q 003100 545 HLLDLGFRKDVENIVD-------CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAP- 616 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~-------~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~- 616 (848)
.+.+. .+..++.++. .+++..|+|+||||+++ ...++.++.......... .....+..+..++....
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~---~~~~RPvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNF---HPNVRPVPLELHIQGFNI 1131 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEEC---CGGGCSSCEEEEEEEECC
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEe---CCCCCCCCeEEEEEeccC
Confidence 98874 5655555544 34678999999999987 455666654332222111 12223444443332221
Q ss_pred --hhhHH----HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh------------------------------
Q 003100 617 --HELHF----QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM------------------------------ 660 (848)
Q Consensus 617 --~~~k~----~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~------------------------------ 660 (848)
...++ ..+...+..+ .+.+++||||+|+..|+.++..|...
T Consensus 1132 ~~~~~~~~~~~~~~~~~i~~~---~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1132 SHTQTRLLSMAKPVYHAITKH---SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp CSHHHHHHTTHHHHHHHHHHH---CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred CCchhhhhhhcchHHHHHHHh---cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 11121 1223333333 46779999999999999887766431
Q ss_pred ----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----------cCCCCChhHHHHHhh
Q 003100 661 ----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----------VGIPPDREQYIHRLG 726 (848)
Q Consensus 661 ----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----------yd~P~s~~~yiQRiG 726 (848)
...+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. ...|.++.+|+||+|
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhc
Confidence 246889999999999999999999999999999999999999999999983 234678999999999
Q ss_pred ccCCCCC--CceEEEEeCcchhhHHHHhc
Q 003100 727 RTGREGK--EGEGVLLLAPWEEYFLDDLK 753 (848)
Q Consensus 727 RaGR~G~--~G~~i~l~~~~e~~~l~~L~ 753 (848)
||||.|. .|.|++++.+.+..+++.+-
T Consensus 1289 RAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1289 HANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp TBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred cccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 9999996 79999999988877776653
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.4e-39 Score=414.07 Aligned_cols=345 Identities=21% Similarity=0.299 Sum_probs=260.4
Q ss_pred CCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 398 g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
||+.|+++|.+++|.++. ++|++|+||||||||++|.+|+++.+.+...........+.++|||+|+|+||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999998875 7899999999999999999999999987544333333456799999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
+.+... ++.|..++|+....... . .+++|+||||+++..++.+. .....+..+++|||||+|.+.+ ..+..++
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE 228 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLLHD-DRGPVLE 228 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGGGS-TTHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhcCC-ccHHHHH
Confidence 988764 88999999998764322 1 24899999999975444332 2223478899999999998866 4666666
Q ss_pred HHHH-------hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh---hHHHHHHH
Q 003100 557 NIVD-------CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE---LHFQILHH 626 (848)
Q Consensus 557 ~Il~-------~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~---~k~~~L~~ 626 (848)
.++. .+++..|+|++|||+|+ ...++.++...+..-+... .....|..+.+.++..... ..+..+..
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~--~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYF--DNSFRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEEC--CGGGCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEE--CCCCccCccEEEEeccCCcchhhhhHHHHH
Confidence 5544 35678899999999986 4556665433211101011 2223556666665544332 23333333
Q ss_pred HHHHHhh-CCCCceEEEEEecchHHHHHHHHHHHh-------------------------------------ccceeeec
Q 003100 627 LLKEHIL-GTPDYKVIVFCSTGMVTSLLYLLLREM-------------------------------------KMNVREMY 668 (848)
Q Consensus 627 lL~~~~~-~~~~~kiLVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lh 668 (848)
.+...+. ....+++||||+|++.|+.++..|.+. ...+..||
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 3333222 234568999999999999988887642 23588999
Q ss_pred CCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE----cC------CCCChhHHHHHhhccCCCC--CCce
Q 003100 669 SRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ----VG------IPPDREQYIHRLGRTGREG--KEGE 736 (848)
Q Consensus 669 g~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~----yd------~P~s~~~yiQRiGRaGR~G--~~G~ 736 (848)
|+|++.+|..+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|.||+|||||.| ..|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999995 44 3568999999999999987 4799
Q ss_pred EEEEeCcchhhHHHHh
Q 003100 737 GVLLLAPWEEYFLDDL 752 (848)
Q Consensus 737 ~i~l~~~~e~~~l~~L 752 (848)
+++++.+.+..++..+
T Consensus 466 ~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 466 GILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEESTTCCHHHHH
T ss_pred EEEEecchhHHHHHHH
Confidence 9999988776555444
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-39 Score=390.02 Aligned_cols=321 Identities=18% Similarity=0.230 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEE
Q 003100 388 PLTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461 (848)
Q Consensus 388 ~~l~~~L~~~g~~~~t~iQ~~aI~~il~g------~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL 461 (848)
+.+.+.+..++| .||++|.++|+.++++ .+++++|+||||||++|++|+++.+... .++||+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEE
Confidence 344555678999 8999999999998875 5999999999999999999999887543 369999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 462 ~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
+||++||.|+++.+.+++... ++.+..++|+...... ...+..+.++|+|+||+.|.+ ...+.++++|
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~~~~~~l~lV 494 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE--------DVHFKNLGLV 494 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--------CCCCSCCCEE
T ss_pred eCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--------hhhccCCceE
Confidence 999999999999999998654 7889999999876543 234455669999999998743 2457789999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
||||+|++.... ...+.......++++||||+.+....+.. +.......++..... ...+...+. ..
T Consensus 495 VIDEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~-~g~~~~s~i~~~p~~----r~~i~~~~~--~~- 561 (780)
T 1gm5_A 495 IIDEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAF-YGDLDVTVIDEMPPG----RKEVQTMLV--PM- 561 (780)
T ss_dssp EEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH-TCCSSCEEECCCCSS----CCCCEECCC--CS-
T ss_pred EecccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH-hCCcceeeeeccCCC----CcceEEEEe--cc-
Confidence 999999963221 11222334568999999998765433322 111123333221111 112222221 12
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecc--------hHHHHHHHHHHH---hccceeeecCCcchhhHHHHHHHHhcCC
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTG--------MVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASK 687 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~--------~~a~~l~~~L~~---~~~~v~~lhg~ls~~~R~~i~~~F~~G~ 687 (848)
.+...+...+...+ ..+.+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+
T Consensus 562 ~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~ 639 (780)
T 1gm5_A 562 DRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR 639 (780)
T ss_dssp STHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS
T ss_pred chHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 22334445555443 3467899999976 457788888877 4688999999999999999999999999
Q ss_pred ceEEEecCCccccccCCCCCeeEEcCCCC-ChhHHHHHhhccCCCCCCceEEEEeCcc
Q 003100 688 RLILVTSDVSARGMDYPDVTSVVQVGIPP-DREQYIHRLGRTGREGKEGEGVLLLAPW 744 (848)
Q Consensus 688 ~~VLVaTdvl~rGlDip~V~~VI~yd~P~-s~~~yiQRiGRaGR~G~~G~~i~l~~~~ 744 (848)
++|||||+++++|||+|++++||+++.|. +.++|.||+||+||.|..|.|++++.+.
T Consensus 640 ~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 640 YDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999999999996 7899999999999999999999999853
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-38 Score=387.80 Aligned_cols=338 Identities=16% Similarity=0.167 Sum_probs=253.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
..+|.++++++.+.+.+...+ ..|++.|+++|+.++. +++++++||||||||+ ++|++ +....... ..+.
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l--l~~~~~~~----~~g~ 141 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF--VLFDEMPH----LENT 141 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH--HHHHHCGG----GGTC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH--HHHhcccc----CCCc
Confidence 356999999999999999988 7799999999987775 5689999999999999 67776 22221110 1134
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
+++|++|+|+||.|++..+...+....+..++....... .....++|+|+|||+|.+.+... ..+.+++
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~-------~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~ 210 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN-------KTSNKTILKYMTDGMLLREAMED----HDLSRYS 210 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE-------ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc-------ccCCCCCEEEECHHHHHHHHhhC----ccccCCC
Confidence 799999999999999988877654322333332221111 11234799999999999988765 3478999
Q ss_pred EEEEecccc-cccccc-hhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeeccccc
Q 003100 537 MLVLDEADH-LLDLGF-RKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLV 614 (848)
Q Consensus 537 ~lVIDEAH~-ll~~gf-~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~ 614 (848)
+|||||+|. .++..+ ...+..+... .+..|+++||||++.. .+...+ .. ..++...+ ....+.+.+..
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~~~~-~~-~~vi~v~g-----r~~pv~~~~~~ 280 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQRYF-ND-APLLAVPG-----RTYPVELYYTP 280 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHHHHT-TS-CCEEECCC-----CCCCEEEECCS
T ss_pred EEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHHHHh-cC-CCcccccC-----cccceEEEEec
Confidence 999999995 665432 2333444433 3578999999999643 444443 32 22333222 22346666666
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH-----------hccceeeecCCcchhhHHHHHHHH
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-----------MKMNVREMYSRKPQLYRDRISEEF 683 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~-----------~~~~v~~lhg~ls~~~R~~i~~~F 683 (848)
.+.......+...+...+.....+++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 555555544444444433334578999999999999999999985 467899999999999999999999
Q ss_pred h-----cCCceEEEecCCccccccCCCCCeeEEcCC------------------CCChhHHHHHhhccCCCCCCceEEEE
Q 003100 684 R-----ASKRLILVTSDVSARGMDYPDVTSVVQVGI------------------PPDREQYIHRLGRTGREGKEGEGVLL 740 (848)
Q Consensus 684 ~-----~G~~~VLVaTdvl~rGlDip~V~~VI~yd~------------------P~s~~~yiQRiGRaGR~G~~G~~i~l 740 (848)
+ +|..+|||||+++++|||+|+|++||++|+ |.+.++|+||+|||||. .+|.|++|
T Consensus 361 ~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l 439 (773)
T 2xau_A 361 PESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRL 439 (773)
T ss_dssp CCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEES
T ss_pred ccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEE
Confidence 9 999999999999999999999999999888 89999999999999998 79999999
Q ss_pred eCcchh
Q 003100 741 LAPWEE 746 (848)
Q Consensus 741 ~~~~e~ 746 (848)
+++.+.
T Consensus 440 ~~~~~~ 445 (773)
T 2xau_A 440 YTEEAF 445 (773)
T ss_dssp SCHHHH
T ss_pred ecHHHh
Confidence 987654
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.2e-40 Score=390.00 Aligned_cols=314 Identities=17% Similarity=0.155 Sum_probs=233.2
Q ss_pred ccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 381 FDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 381 f~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
|.. +++++.++++|... ...++|+|+++++.+++++|+|++|+||||||++|++|+++.+... +.++|
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vL 219 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTL 219 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEE
Confidence 444 56677666666543 4778999888999999999999999999999999999999998763 23799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
||+|||+||.|+++.+. +..+........ .....+..|.++|.+.|...+... ..+.++++||
T Consensus 220 vl~PtreLa~Qi~~~l~-------~~~v~~~~~~l~------~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iV 282 (618)
T 2whx_A 220 ILAPTRVVAAEMEEALR-------GLPIRYQTPAVK------SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIV 282 (618)
T ss_dssp EEESSHHHHHHHHHHTT-------TSCEEECCTTSS------CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEE
T ss_pred EEcChHHHHHHHHHHhc-------CCceeEecccce------eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEE
Confidence 99999999999998765 223332111100 011223467788999888777654 3478899999
Q ss_pred EecccccccccchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChh
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHE 618 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~ 618 (848)
|||||++ +.+|...+..|+..++ +++|+++||||++..+..+.. .....+..... .+.
T Consensus 283 iDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~----~~~~~~~v~~~----~~~------------ 341 (618)
T 2whx_A 283 MDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ----SNSPIEDIERE----IPE------------ 341 (618)
T ss_dssp EESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC----CSSCEEEEECC----CCS------------
T ss_pred EECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc----cCCceeeeccc----CCH------------
Confidence 9999998 7778888888888775 679999999999887543222 12222221110 000
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.....+...+.. ..+++||||+|++.++.++..|...++.+..+||. +|.++++.|++|+.+|||||++++
T Consensus 342 ~~~~~ll~~l~~-----~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~ 412 (618)
T 2whx_A 342 RSWNTGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISE 412 (618)
T ss_dssp SCCSSSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGG
T ss_pred HHHHHHHHHHHh-----CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHH
Confidence 000111222222 25699999999999999999999999999999984 688999999999999999999999
Q ss_pred ccccCCCCCee--------------------EEcCCCCChhHHHHHhhccCCCCC-CceEEEEeC---cchhhHHHHhc
Q 003100 699 RGMDYPDVTSV--------------------VQVGIPPDREQYIHRLGRTGREGK-EGEGVLLLA---PWEEYFLDDLK 753 (848)
Q Consensus 699 rGlDip~V~~V--------------------I~yd~P~s~~~yiQRiGRaGR~G~-~G~~i~l~~---~~e~~~l~~L~ 753 (848)
+|||+| |++| |+|+.|.+.++|+||+|||||.|. .|.|++|++ +.|..+++.++
T Consensus 413 rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le 490 (618)
T 2whx_A 413 MGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 490 (618)
T ss_dssp TTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHH
T ss_pred cCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHH
Confidence 999997 9998 777779999999999999999964 899999998 66766665554
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1e-38 Score=366.91 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=216.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCCE-EEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 398 GYIQMTRVQEATLSACLEGKDA-VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 398 g~~~~t~iQ~~aI~~il~g~dv-Iv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
|+.+++|+|+ +||.+++++++ +++||||||||++|++|++.++.... .++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~----------~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR----------LRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC----------CcEEEECCCHHHHHHHHHHhc
Confidence 7889999985 79999999887 89999999999999999998876532 369999999999999998763
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHH
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~ 556 (848)
++.+......... ....+..|.++|++.|.+.+.+. ..+.++++|||||||++ +.++...+.
T Consensus 70 -------g~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 70 -------GLPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp -------TSCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred -------Cceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 3334332222111 11233579999999999888765 45788999999999987 444444333
Q ss_pred HHHH-hcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCC
Q 003100 557 NIVD-CLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGT 635 (848)
Q Consensus 557 ~Il~-~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~ 635 (848)
.+.. ..++++|+++||||++..+..+ ... ...++..... .+ .. .+. .+...+..
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~-~~~~~~~~~~----~p--~~-~~~---------~~~~~l~~----- 186 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGSTDPF---PQS-NSPIEDIERE----IP--ER-SWN---------TGFDWITD----- 186 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCSS---CCC-SSCEEEEECC----CC--SS-CCS---------SSCHHHHH-----
T ss_pred HHHHhhcCCCceEEEEccCCCccchhh---hcC-CCceEecCcc----CC--ch-hhH---------HHHHHHHh-----
Confidence 3332 2356799999999998754322 111 2222222100 01 01 110 01122222
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcC--
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVG-- 713 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd-- 713 (848)
..+++||||+++..++.++..|...++.+..+|+.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 2569999999999999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred ------------------CCCChhHHHHHhhccCCCCC-CceEEEEeCc
Q 003100 714 ------------------IPPDREQYIHRLGRTGREGK-EGEGVLLLAP 743 (848)
Q Consensus 714 ------------------~P~s~~~yiQRiGRaGR~G~-~G~~i~l~~~ 743 (848)
.|.+..+|+||+|||||.|. .|.|++|+..
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.9e-36 Score=381.69 Aligned_cols=325 Identities=17% Similarity=0.144 Sum_probs=250.8
Q ss_pred CCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhC----CC--CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 384 CGISPLTIKALT-AAGYIQMTRVQEATLSACLE----GK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 384 l~l~~~l~~~L~-~~g~~~~t~iQ~~aI~~il~----g~--dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
++.++...+.+. .++|. +|++|.++|+.++. ++ |++++++||+|||++|+++++..+.. +.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~ 653 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HK 653 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TC
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 345666666664 57887 69999999999886 65 99999999999999999998866532 23
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||++||++||.|+++.+.+.+... ++.+..+.+....... ...+..+.++|+|+||+.|. . ...+.
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~----~~~~~ 724 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S----DVKFK 724 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S----CCCCS
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C----Ccccc
Confidence 79999999999999999999887654 5778888876554332 23455566999999998663 2 24578
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccc
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCL 613 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~ 613 (848)
++++|||||||++ ......++..++...++++||||+.+....+....+. ....+..... ....+...+.
T Consensus 725 ~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~-~~~~i~~~~~----~r~~i~~~~~ 794 (1151)
T 2eyq_A 725 DLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR-DLSIIATPPA----RRLAVKTFVR 794 (1151)
T ss_dssp SEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTS-EEEECCCCCC----BCBCEEEEEE
T ss_pred ccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCC-CceEEecCCC----CccccEEEEe
Confidence 8999999999994 4445666777777899999999987766555544443 2222221111 1112333222
Q ss_pred cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEE
Q 003100 614 VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLIL 691 (848)
Q Consensus 614 ~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VL 691 (848)
.... ......++... ..+++++|||+++..++.++..|.+. ++.+..+||+|++.+|..++..|++|+.+||
T Consensus 795 ~~~~---~~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VL 868 (1151)
T 2eyq_A 795 EYDS---MVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 868 (1151)
T ss_dssp ECCH---HHHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEE
T ss_pred cCCH---HHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 2222 22233333333 24679999999999999999999988 7899999999999999999999999999999
Q ss_pred EecCCccccccCCCCCeeEEcCC-CCChhHHHHHhhccCCCCCCceEEEEeCcch
Q 003100 692 VTSDVSARGMDYPDVTSVVQVGI-PPDREQYIHRLGRTGREGKEGEGVLLLAPWE 745 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd~-P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e 745 (848)
|||+++++|||+|++++||+++. +.+..+|+||+||+||.|+.|.|++++.+.+
T Consensus 869 VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 869 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999999999998 5689999999999999999999999987643
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.3e-38 Score=364.01 Aligned_cols=316 Identities=15% Similarity=0.123 Sum_probs=236.4
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|+++|.++++.++++++++++++||+|||++|+++++..+.... .++|||+||++|+.|+++.+.++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS----------SEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC----------CeEEEEECcHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999999999999998887765321 279999999999999999998774
Q ss_pred hcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHH
Q 003100 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 480 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
. .+++.+..+.|+...... ....++|+|+||+.|... . ...+.++++|||||||++.. ..+..++
T Consensus 182 ~-~~~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~~---~---~~~~~~~~liIiDE~H~~~~----~~~~~il 246 (510)
T 2oca_A 182 L-FSHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVKQ---P---KEWFSQFGMMMNDECHLATG----KSISSII 246 (510)
T ss_dssp S-SCGGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTTS---C---GGGGGGEEEEEEETGGGCCH----HHHHHHG
T ss_pred c-CCccceEEEecCCccccc----cccCCcEEEEeHHHHhhc---h---hhhhhcCCEEEEECCcCCCc----ccHHHHH
Confidence 3 345678888888765432 234589999999976542 1 23467899999999999866 4577788
Q ss_pred HhcCccceeEEEeccCChHHHHHHHHHhccceEEEeecCCC----cccccc--------------------eeec-cccc
Q 003100 560 DCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLG----SVETPV--------------------KIKQ-SCLV 614 (848)
Q Consensus 560 ~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~----~~~~~~--------------------~v~q-~~~~ 614 (848)
..+++..++++||||++.....+..........++...... ..-.+. ...+ ....
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 247 SGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred HhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 88888889999999997664332211110111111110000 000000 0000 0111
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS 694 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT 694 (848)
.....+...+..++..... ....++||||+ ...+..+++.|...+..+..+||++++.+|..+++.|++|+..|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 2223445556666665543 23456666666 888999999999988899999999999999999999999999999999
Q ss_pred -CCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 695 -DVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 695 -dvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
+++++|+|+|++++||++++|.++..|+||+||+||.|..|.+++++.
T Consensus 405 ~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 405 YGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998775666655
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.6e-38 Score=363.96 Aligned_cols=279 Identities=17% Similarity=0.203 Sum_probs=193.1
Q ss_pred HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEe
Q 003100 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~ 491 (848)
++++|+|++++||||||||++|++|+++.+.... .++||++||++||.|+++.+..+ .+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~----------~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----------LRTLVLAPTRVVLSEMKEAFHGL-------DVKFHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTTTS-------CEEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC----------CeEEEEcchHHHHHHHHHHHhcC-------CeEEec
Confidence 4678999999999999999999999999887542 36999999999999999877632 233222
Q ss_pred CCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhcc-----CcccccCCccEEEEecccccccccchhhHHHHHHhc-Ccc
Q 003100 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS-----GLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRR 565 (848)
Q Consensus 492 gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~-----~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l-~~~ 565 (848)
+... +|+||+++++++.... .....+.++++|||||||++ +.+|...+..+...+ +..
T Consensus 67 ~~~~---------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~ 130 (440)
T 1yks_A 67 QAFS---------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANE 130 (440)
T ss_dssp SCCC---------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred ccce---------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCC
Confidence 1110 2666665543332210 00134688999999999998 444443333333333 367
Q ss_pred ceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEe
Q 003100 566 RQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCS 645 (848)
Q Consensus 566 ~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~ 645 (848)
+|+++||||++..+..+... ...+.. +.+. ++...... +...+.. .++++||||+
T Consensus 131 ~~~l~~SAT~~~~~~~~~~~----~~~~~~------------~~~~---~~~~~~~~-~~~~l~~-----~~~~~lVF~~ 185 (440)
T 1yks_A 131 SATILMTATPPGTSDEFPHS----NGEIED------------VQTD---IPSEPWNT-GHDWILA-----DKRPTAWFLP 185 (440)
T ss_dssp CEEEEECSSCTTCCCSSCCC----SSCEEE------------EECC---CCSSCCSS-SCHHHHH-----CCSCEEEECS
T ss_pred ceEEEEeCCCCchhhhhhhc----CCCeeE------------eeec---cChHHHHH-HHHHHHh-----cCCCEEEEeC
Confidence 99999999998764322211 111110 0000 00000000 1122222 2569999999
Q ss_pred cchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE--------------
Q 003100 646 TGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ-------------- 711 (848)
Q Consensus 646 s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~-------------- 711 (848)
+++.++.++..|+..++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 186 s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~ 260 (440)
T 1yks_A 186 SIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGR 260 (440)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeeccccc
Confidence 999999999999999999999999 4688999999999999999999999999999 999996
Q ss_pred -----cCCCCChhHHHHHhhccCCC-CCCceEEEEe---CcchhhHHHHhc
Q 003100 712 -----VGIPPDREQYIHRLGRTGRE-GKEGEGVLLL---APWEEYFLDDLK 753 (848)
Q Consensus 712 -----yd~P~s~~~yiQRiGRaGR~-G~~G~~i~l~---~~~e~~~l~~L~ 753 (848)
|+.|.+.++|+||+|||||. |..|.|++|+ ++.+..+++.++
T Consensus 261 ~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 261 KVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred ceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 88899999999999999997 6899999996 566666665554
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.5e-36 Score=348.58 Aligned_cols=289 Identities=24% Similarity=0.261 Sum_probs=218.1
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+++|.++++.++++++++++++||+|||++|++++... +.++|||+||++|+.|+++++.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC--
Confidence 6999999999999999999999999999999999987643 126999999999999999998883
Q ss_pred cCCCce-EEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHH
Q 003100 481 NHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 481 ~~~~i~-v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
++. +..+.|+... ..+|+|+||+.+...+... ..++++|||||||++.+.+|.. ++
T Consensus 157 ---~~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~------~~~~~liIvDEaH~~~~~~~~~----~~ 213 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYVQ----IA 213 (472)
T ss_dssp ---CGGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEETGGGTTSTTTHH----HH
T ss_pred ---CCcceEEECCCcCC----------cCCEEEEEcHHHHHHHHHh------cCCCCEEEEECCcCCCChHHHH----HH
Confidence 567 8888877642 3699999999998766532 2458999999999999877654 45
Q ss_pred HhcCccceeEEEeccCChH-------------------HHHHHHHHhccceEEEee-cCCCccc----------------
Q 003100 560 DCLPRRRQSLLFSATMPKE-------------------VRRISQLVLKREHTYIDT-VGLGSVE---------------- 603 (848)
Q Consensus 560 ~~l~~~~Q~ll~SATl~~~-------------------v~~l~~~~l~~~~~~i~~-~~~~~~~---------------- 603 (848)
..+ +..+++++|||+... ...+...++. +..++.. .......
T Consensus 214 ~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (472)
T 2fwr_A 214 QMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQFLR 291 (472)
T ss_dssp HTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSCSS
T ss_pred Hhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 554 457899999999731 2222111111 1111000 0000000
Q ss_pred -------ccceeeccc---------------------ccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHH
Q 003100 604 -------TPVKIKQSC---------------------LVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYL 655 (848)
Q Consensus 604 -------~~~~v~q~~---------------------~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~ 655 (848)
....+.+.+ +.+....+...+..++.. ..+.++||||++...++.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~~~l~~ 367 (472)
T 2fwr_A 292 ARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRHNELVYRISK 367 (472)
T ss_dssp SCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHHHHHHH
T ss_pred hcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEECCHHHHHHHHH
Confidence 000000000 112234566677777765 257799999999999999998
Q ss_pred HHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCC-
Q 003100 656 LLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE- 734 (848)
Q Consensus 656 ~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~- 734 (848)
.|. +..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|..
T Consensus 368 ~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 368 VFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp HTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred HhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCC
Confidence 873 77899999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ceEEE
Q 003100 735 GEGVL 739 (848)
Q Consensus 735 G~~i~ 739 (848)
+.+++
T Consensus 443 ~~~~i 447 (472)
T 2fwr_A 443 KEAVL 447 (472)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 34443
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.6e-37 Score=362.54 Aligned_cols=278 Identities=19% Similarity=0.197 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.++.+|.++++.+.++++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 4566777777777789999999999999999999988741 23699999999999999998887763
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
..+...+|+.. ...+++|+|+||++|+ ... .+.+.++++|||||||+ ++.+|...+..|+.
T Consensus 283 ----~~vg~~vG~~~--------~~~~~~IlV~TPGrLl---~~~---~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~ 343 (666)
T 3o8b_A 283 ----IDPNIRTGVRT--------ITTGAPVTYSTYGKFL---ADG---GCSGGAYDIIICDECHS-TDSTTILGIGTVLD 343 (666)
T ss_dssp ----CCCEEECSSCE--------ECCCCSEEEEEHHHHH---HTT---SCCTTSCSEEEETTTTC-CSHHHHHHHHHHHH
T ss_pred ----CCeeEEECcEe--------ccCCCCEEEECcHHHH---hCC---CcccCcccEEEEccchh-cCccHHHHHHHHHH
Confidence 44666777754 2345899999999983 332 35577899999999965 57778889999999
Q ss_pred hcCccce--eEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCc
Q 003100 561 CLPRRRQ--SLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDY 638 (848)
Q Consensus 561 ~l~~~~Q--~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~ 638 (848)
.++..+| +++||||++..+. ...+ ..... ..... . .+. .+ ..... +.....+
T Consensus 344 ~l~~~~~~llil~SAT~~~~i~------~~~p-~i~~v-~~~~~-~--~i~-~~---~~~~~-----------l~~~~~~ 397 (666)
T 3o8b_A 344 QAETAGARLVVLATATPPGSVT------VPHP-NIEEV-ALSNT-G--EIP-FY---GKAIP-----------IEAIRGG 397 (666)
T ss_dssp HTTTTTCSEEEEEESSCTTCCC------CCCT-TEEEE-ECBSC-S--SEE-ET---TEEEC-----------GGGSSSS
T ss_pred hhhhcCCceEEEECCCCCcccc------cCCc-ceEEE-eeccc-c--hhH-HH---Hhhhh-----------hhhccCC
Confidence 9988777 6778999987421 0111 11110 00000 0 000 00 00000 0112467
Q ss_pred eEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeE--------
Q 003100 639 KVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVV-------- 710 (848)
Q Consensus 639 kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI-------- 710 (848)
++||||++++.++.+++.|++.++.+..+||++++.+ |.++..+|||||+++++|||+| |++||
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ 469 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQ 469 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccc
Confidence 9999999999999999999999999999999999875 4566779999999999999997 99999
Q ss_pred --EcC-----------CCCChhHHHHHhhccCCCCCCceEEEEeCcchhh
Q 003100 711 --QVG-----------IPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEY 747 (848)
Q Consensus 711 --~yd-----------~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~ 747 (848)
||| .|.+.++|+||+||||| |+.|. ++|+++.+..
T Consensus 470 ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 470 TVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 677 89999999999999999 99999 9999887654
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.4e-37 Score=367.27 Aligned_cols=302 Identities=17% Similarity=0.210 Sum_probs=211.9
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 393 ALTAAGYI-----QMTRVQE-----ATLSACL------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 393 ~L~~~g~~-----~~t~iQ~-----~aI~~il------~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
+|..+||. .||++|+ ++|+.++ +++|+|++|+||||||++|++|+++.+... +.
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~ 271 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RL 271 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CC
Confidence 34456666 8999999 9999988 899999999999999999999999887653 23
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+||++||.|+++.+..+ ++ ....+... .....+.-+-+.+.+.+...+... ..+.+++
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i--~~~~~~l~------~v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~ 334 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PV--RYLTPAVQ------REHSGNEIVDVMCHATLTHRLMSP----LRVPNYN 334 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CC--EECCC---------CCCCSCCCEEEEEHHHHHHHHHSS----SCCCCCS
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Ce--eeeccccc------ccCCHHHHHHHHHhhhhHHHHhcc----cccccce
Confidence 6999999999999999877643 22 21111100 000111233444555554444432 3578899
Q ss_pred EEEEecccccccccchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccC
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVA 615 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~ 615 (848)
+|||||||++ +..+...+..+...++ +.+|+++||||++..+..+.. ....+..... .+
T Consensus 335 lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~----~~~~i~~v~~------------~~--- 394 (673)
T 2wv9_A 335 LFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD----TNSPVHDVSS------------EI--- 394 (673)
T ss_dssp EEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEEEC------------CC---
T ss_pred EEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc----cCCceEEEee------------ec---
Confidence 9999999998 3223333333333332 679999999999876432211 1111111110 00
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
+...... +...+.. ..+++||||++++.++.++..|...++.+..+||. +|..+++.|++|+++|||||+
T Consensus 395 ~~~~~~~-~l~~l~~-----~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 395 PDRAWSS-GFEWITD-----YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSSCCSS-CCHHHHS-----CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECG
T ss_pred CHHHHHH-HHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECc
Confidence 0000000 1112221 46799999999999999999999999999999994 799999999999999999999
Q ss_pred CccccccCCCCCeeEE--------------------cCCCCChhHHHHHhhccCCC-CCCceEEEEe---CcchhhHHHH
Q 003100 696 VSARGMDYPDVTSVVQ--------------------VGIPPDREQYIHRLGRTGRE-GKEGEGVLLL---APWEEYFLDD 751 (848)
Q Consensus 696 vl~rGlDip~V~~VI~--------------------yd~P~s~~~yiQRiGRaGR~-G~~G~~i~l~---~~~e~~~l~~ 751 (848)
++++|||+| +++||+ |++|.+.++|+||+|||||. |+.|.|++|+ .+.|..+++.
T Consensus 465 v~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 465 ISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp GGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred hhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 999999999 999998 56899999999999999999 7899999996 4666555444
Q ss_pred h
Q 003100 752 L 752 (848)
Q Consensus 752 L 752 (848)
+
T Consensus 544 i 544 (673)
T 2wv9_A 544 T 544 (673)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-36 Score=350.84 Aligned_cols=273 Identities=16% Similarity=0.200 Sum_probs=198.0
Q ss_pred HHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEE
Q 003100 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489 (848)
Q Consensus 410 I~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~ 489 (848)
...+.+++++|++||||||||++|++|+++.+... +.++||++|||+||.|+++.+. ++.+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~ 77 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR-------GLPVRY 77 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT-------TSCEEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc-------CceEeE
Confidence 44566789999999999999999999999988753 2369999999999999998875 333333
Q ss_pred EeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc-----cccccchhhHHHHHHhcCc
Q 003100 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-----LLDLGFRKDVENIVDCLPR 564 (848)
Q Consensus 490 l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~-----ll~~gf~~~l~~Il~~l~~ 564 (848)
..+..... ...+..+.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. .++
T Consensus 78 ~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~ 142 (459)
T 2z83_A 78 QTSAVQRE------HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELG 142 (459)
T ss_dssp CC--------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTT
T ss_pred EecccccC------CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccC
Confidence 22221110 1123467789999888777654 4478999999999998 44444433221 236
Q ss_pred cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEE
Q 003100 565 RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFC 644 (848)
Q Consensus 565 ~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~ 644 (848)
..|+++||||++..+..+... ...++..... .+ ... ... +..++.. ..+++||||
T Consensus 143 ~~~~il~SAT~~~~~~~~~~~----~~pi~~~~~~----~~--~~~------~~~----~~~~l~~-----~~~~~LVF~ 197 (459)
T 2z83_A 143 EAAAIFMTATPPGTTDPFPDS----NAPIHDLQDE----IP--DRA------WSS----GYEWITE-----YAGKTVWFV 197 (459)
T ss_dssp SCEEEEECSSCTTCCCSSCCC----SSCEEEEECC----CC--SSC------CSS----CCHHHHH-----CCSCEEEEC
T ss_pred CccEEEEEcCCCcchhhhccC----CCCeEEeccc----CC--cch------hHH----HHHHHHh-----cCCCEEEEe
Confidence 799999999998764322111 1111111000 00 000 000 1122222 256999999
Q ss_pred ecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCeeEE-------------
Q 003100 645 STGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTSVVQ------------- 711 (848)
Q Consensus 645 ~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~VI~------------- 711 (848)
+++..++.++..|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 198 ~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~ 272 (459)
T 2z83_A 198 ASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEG 272 (459)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSS
T ss_pred CChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccc
Confidence 99999999999999999999999995 6888999999999999999999999999999 99999
Q ss_pred -------cCCCCChhHHHHHhhccCCCCC-CceEEEEeCcc
Q 003100 712 -------VGIPPDREQYIHRLGRTGREGK-EGEGVLLLAPW 744 (848)
Q Consensus 712 -------yd~P~s~~~yiQRiGRaGR~G~-~G~~i~l~~~~ 744 (848)
|+.|.+..+|+||+|||||.|. .|.|++|+++.
T Consensus 273 ~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 273 EGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=312.92 Aligned_cols=210 Identities=30% Similarity=0.418 Sum_probs=184.1
Q ss_pred cccCCCCcccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHHHHHHHHHHhC
Q 003100 368 EKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445 (848)
Q Consensus 368 ~~~~~~~~~~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g--~dvIv~a~TGSGKTlaflLPil~~l~~~~ 445 (848)
..+...+.....+|+++++++.++++|..+||..||++|.++||.++.+ +|++++||||||||++|++|+++++....
T Consensus 81 ~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~ 160 (300)
T 3fmo_B 81 QRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (300)
T ss_dssp CSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS
T ss_pred cCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC
Confidence 3455566777889999999999999999999999999999999999997 99999999999999999999998874322
Q ss_pred CCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhc
Q 003100 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENK 525 (848)
Q Consensus 446 ~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~ 525 (848)
.++++|||+|||+||.|++..+..+....+++.+.+++|+....... ..+++|+|+||++|++++.+.
T Consensus 161 --------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 161 --------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp --------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTT
T ss_pred --------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhc
Confidence 24579999999999999999999998877788999999987754322 345899999999999999764
Q ss_pred cCcccccCCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 526 SGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 526 ~~~~~~l~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
. .+.+.++++|||||||+|++ .+|...+..|+..+++.+|+++||||+++.+..++..++.++.
T Consensus 229 ~--~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~ 293 (300)
T 3fmo_B 229 K--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 293 (300)
T ss_dssp C--CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE
T ss_pred C--CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCe
Confidence 3 34578999999999999998 7899999999999999999999999999999999999997544
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.7e-34 Score=329.94 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=192.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 494 (848)
+|++++++||||||||++|++|+++.+...+ .++||++||++||.|+++.+. ++.+.+.+|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g----------~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR----------LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT-------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC----------CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCc
Confidence 3789999999999999999999997776532 369999999999999887664 44566555542
Q ss_pred chhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHh-cCccceeEEEec
Q 003100 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC-LPRRRQSLLFSA 573 (848)
Q Consensus 495 ~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~-l~~~~Q~ll~SA 573 (848)
.. ....+.-+.++|.+.+...+... ..+.++++|||||||++ +.++......+... .++.+|+++|||
T Consensus 64 ~~------~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 64 QS------ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEES
T ss_pred cc------cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 21 11123467788999887766653 34678999999999997 43344444444433 256899999999
Q ss_pred cCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHH
Q 003100 574 TMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLL 653 (848)
Q Consensus 574 Tl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l 653 (848)
|+++.+..+.. ....++... ..+ +. .....+..++.. ..+++||||++++.++.+
T Consensus 133 T~~~~~~~~~~----~~~~i~~~~------------~~~---~~-~~~~~~~~~l~~-----~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 133 TPPGTTEAFPP----SNSPIIDEE------------TRI---PD-KAWNSGYEWITE-----FDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp SCTTCCCSSCC----CSSCCEEEE------------CCC---CS-SCCSSCCHHHHS-----CSSCEEEECSSHHHHHHH
T ss_pred CCCcchhhhcC----CCCceeecc------------ccC---CH-HHHHHHHHHHHc-----CCCCEEEEeCCHHHHHHH
Confidence 99875322110 001111100 000 00 000111222322 256899999999999999
Q ss_pred HHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCccccccCCCCCe-----------------eEEcCCCC
Q 003100 654 YLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSARGMDYPDVTS-----------------VVQVGIPP 716 (848)
Q Consensus 654 ~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~rGlDip~V~~-----------------VI~yd~P~ 716 (848)
+..|...++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.
T Consensus 188 ~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~ 262 (431)
T 2v6i_A 188 GTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAI 262 (431)
T ss_dssp HHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccC
Confidence 99999999999999997 588899999999999999999999999999 655 57888999
Q ss_pred ChhHHHHHhhccCCCCC-CceEEEEe
Q 003100 717 DREQYIHRLGRTGREGK-EGEGVLLL 741 (848)
Q Consensus 717 s~~~yiQRiGRaGR~G~-~G~~i~l~ 741 (848)
+.++|+||+||+||.|. .|.++++.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999985 45555555
No 52
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.4e-34 Score=340.62 Aligned_cols=305 Identities=16% Similarity=0.122 Sum_probs=219.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH
Q 003100 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (848)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre 466 (848)
..+.++++.++.+ |.|.......+++++++++||||||||+ ++++.+.... .++|++|||+
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-----------~gl~l~PtR~ 190 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-----------SGVYCGPLKL 190 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-----------SEEEEESSHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-----------CeEEEeCHHH
Confidence 3444455544433 2333344456789999999999999998 4555555432 3589999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccc
Q 003100 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (848)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~l 546 (848)
||.|+++.+.+. ++.+..++|+...... -.....+++++|++.+. ....+++|||||||++
T Consensus 191 LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~-----------l~~~v~lvVIDEaH~l 251 (677)
T 3rc3_A 191 LAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS-----------VTTPYEVAVIDEIQMI 251 (677)
T ss_dssp HHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC-----------SSSCEEEEEECSGGGG
T ss_pred HHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh-----------hcccCCEEEEecceec
Confidence 999999998775 6778999998765110 00112577888875431 2457899999999999
Q ss_pred ccccchhhHHHHHHhcC-ccceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceeecccccCChhhHHHHHH
Q 003100 547 LDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIKQSCLVAPHELHFQILH 625 (848)
Q Consensus 547 l~~gf~~~l~~Il~~l~-~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~q~~~~~~~~~k~~~L~ 625 (848)
++.+|...+..++..++ +..|++++|||. +.+..+..... ....+..... ..+..+....+ .
T Consensus 252 ~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~~-~~~~v~~~~r----~~~l~~~~~~l--~--------- 314 (677)
T 3rc3_A 252 RDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTTG-EEVEVRDYKR----LTPISVLDHAL--E--------- 314 (677)
T ss_dssp GCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHHT-CCEEEEECCC----SSCEEECSSCC--C---------
T ss_pred CCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhcC-CceEEEEeee----cchHHHHHHHH--H---------
Confidence 99999999999998888 788999999995 33444443332 1222211100 01111111100 0
Q ss_pred HHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc--CCceEEEecCCccccccC
Q 003100 626 HLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA--SKRLILVTSDVSARGMDY 703 (848)
Q Consensus 626 ~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~--G~~~VLVaTdvl~rGlDi 703 (848)
.+.. ...+.||||++++.++.++..|.+.++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+
T Consensus 315 -~l~~-----~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi 388 (677)
T 3rc3_A 315 -SLDN-----LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL 388 (677)
T ss_dssp -SGGG-----CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC
T ss_pred -HHHh-----cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc
Confidence 0001 12356899999999999999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCeeEEcCC--------------CCChhHHHHHhhccCCCCCC---ceEEEEeCcchhhHHHHhcc
Q 003100 704 PDVTSVVQVGI--------------PPDREQYIHRLGRTGREGKE---GEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 704 p~V~~VI~yd~--------------P~s~~~yiQRiGRaGR~G~~---G~~i~l~~~~e~~~l~~L~~ 754 (848)
+|++||++++ |.+.++|+||+|||||.|.. |.|+++. +.+...++.+..
T Consensus 389 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d~~~~~~~~~ 454 (677)
T 3rc3_A 389 -SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HEDLSLLKEILK 454 (677)
T ss_dssp -CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTHHHHHHHHHH
T ss_pred -CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cchHHHHHHHHh
Confidence 9999999999 78999999999999999964 6665554 445445554443
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1e-33 Score=335.98 Aligned_cols=315 Identities=15% Similarity=0.149 Sum_probs=189.9
Q ss_pred CCCcHHHHHHHHHHhC----C-CCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHH-H
Q 003100 400 IQMTRVQEATLSACLE----G-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-A 473 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~----g-~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~-~ 473 (848)
..|+++|.++++.+++ + ++++++++||||||+++ ++++..++...+... ....+.++|||+||++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~-~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRT-GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSS-CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccc-cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3599999999998876 4 66999999999999994 556666665432110 1112347999999999999998 6
Q ss_pred HHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCc-ccccCCccEEEEecccccccccch
Q 003100 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL-SVRLMGLKMLVLDEADHLLDLGFR 552 (848)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~-~~~l~~l~~lVIDEAH~ll~~gf~ 552 (848)
.+..+ +..+..+.++. .....+|+|+||++|...+.....+ .+....+++|||||||++...+ .
T Consensus 255 ~~~~~-----~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 255 TFTPF-----GDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp CCTTT-----CSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHhc-----chhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 65544 22333333322 1234799999999998876422111 2345678999999999987653 3
Q ss_pred hhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhcc-----------------ceEEEeecCCCccc--c---------
Q 003100 553 KDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKR-----------------EHTYIDTVGLGSVE--T--------- 604 (848)
Q Consensus 553 ~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~-----------------~~~~i~~~~~~~~~--~--------- 604 (848)
..+..++..++ ..++++||||+..........++.. ++.++......... .
T Consensus 320 ~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 320 SNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp --CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred HHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 45667777775 4679999999874322211122211 11111110000000 0
Q ss_pred cceeecc-ccc------CChhhHHHHHHHHHHHHhhC-CCCceEEEEEecchHHHHHHHHHHHhccc--------eeeec
Q 003100 605 PVKIKQS-CLV------APHELHFQILHHLLKEHILG-TPDYKVIVFCSTGMVTSLLYLLLREMKMN--------VREMY 668 (848)
Q Consensus 605 ~~~v~q~-~~~------~~~~~k~~~L~~lL~~~~~~-~~~~kiLVF~~s~~~a~~l~~~L~~~~~~--------v~~lh 668 (848)
...+... +.. .....+...+...+..++.. .+.+++||||+++.+|+.++..|...+.. +..+|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~ 478 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVT 478 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECS
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEe
Confidence 0000000 000 00111223333333332221 35679999999999999999999886543 77899
Q ss_pred CCcchhhHHHHHHHHhcCCce---EEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCC
Q 003100 669 SRKPQLYRDRISEEFRASKRL---ILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGK 733 (848)
Q Consensus 669 g~ls~~~R~~i~~~F~~G~~~---VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~ 733 (848)
|.+++ +|..+++.|++|+.. |||||+++++|+|+|+|++||++++|.+...|+||+||+||.+.
T Consensus 479 g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 479 SEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp STTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99874 799999999998866 89999999999999999999999999999999999999999874
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.9e-33 Score=290.90 Aligned_cols=210 Identities=34% Similarity=0.484 Sum_probs=184.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|.++++++.+++.|.++||..|+++|.++|+.+++|+|++++||||||||++|++|++.++....... ...++
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~---~~~~~ 103 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE---RGDGP 103 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC---TTCCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc---cCCCC
Confidence 346799999999999999999999999999999999999999999999999999999999999987543211 12345
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++|||+||++||.|+++.+.+++... ++.+..++|+.........+.. +++|+|+||++|.+++... ...+.+++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~---~~~~~~~~ 178 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRLIDFLECG---KTNLRRTT 178 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHT---SCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CCCccccc
Confidence 79999999999999999999988765 7889999999887766666554 4899999999999999776 34678999
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEEe
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYID 595 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~ 595 (848)
+|||||||++++++|...+..++..+++.+|+++||||+++.+..++..++++ +..|.
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~-~~~i~ 236 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD-YIHIN 236 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSS-CEEEE
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCC-CEEEE
Confidence 99999999999999999999999999999999999999999999999999874 44443
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.7e-32 Score=276.71 Aligned_cols=201 Identities=34% Similarity=0.572 Sum_probs=178.4
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|+++++++.++++|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.... .++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeE
Confidence 4699999999999999999999999999999999999999999999999999999999998764321 23479
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEE
Q 003100 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~l 538 (848)
||++||++|+.|+++.+.++....+++.+..++|+.........+. .+++|+|+||++|.+++... ...+.++++|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~l 150 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKG---VAKVDHVQMI 150 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTT---CSCCTTCCEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC-CCCCEEEeCHHHHHHHHHcC---CcCcccCCEE
Confidence 9999999999999999999987766788999999988765555543 45899999999999998765 3457889999
Q ss_pred EEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 539 VIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
||||||++.+.+|...+..++..+++.+|+++||||++..+..++..++.++.
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999999999999887554
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=282.37 Aligned_cols=206 Identities=32% Similarity=0.460 Sum_probs=171.9
Q ss_pred ccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 378 QKRFDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 378 ~~~f~~-l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
..+|.+ +++++.++++|.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+....... ....+.
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~--~~~~~~ 95 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR--EQRNGP 95 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CCC
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh--hccCCC
Confidence 467888 79999999999999999999999999999999999999999999999999999998875432111 112345
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++||.|+++.+.++. ..++.+..++|+.........+.. +++|+|+||++|.+++... ...+.+++
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 169 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNN---SVNLRSIT 169 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTT---CCCCTTCC
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CcCcccce
Confidence 79999999999999999999985 347888999999877655555543 4899999999999988765 35578899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
+|||||||++++++|...+..++..+++.+|+++||||+++.+..++..+++++.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 224 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM 224 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCE
Confidence 9999999999999999999999999999999999999999999999999887554
No 57
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=288.48 Aligned_cols=210 Identities=39% Similarity=0.637 Sum_probs=179.7
Q ss_pred cccCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCC
Q 003100 377 SQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (848)
Q Consensus 377 ~~~~f~~l~--l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~ 454 (848)
....|.+++ +++.++++|..+||..|+++|.++++.++.++|++++||||||||++|++|+++.+.+.... ...
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~ 125 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRN 125 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGG
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccC
Confidence 445677877 99999999999999999999999999999999999999999999999999999998864321 122
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCC
Q 003100 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (848)
Q Consensus 455 ~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~ 534 (848)
+.++|||+||++||.|+++.+.+++... ++.+..++|+.........+..+ ++|+|+||++|.+++..... ..+.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~--~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPG--FMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTT--CCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCC--ccccc
Confidence 4579999999999999999999998654 67889999998877666655544 89999999999999877532 35778
Q ss_pred ccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceEEE
Q 003100 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHTYI 594 (848)
Q Consensus 535 l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i 594 (848)
+++|||||||++++++|...+..|+..+++.+|+++||||+++.+..+++.+++.++.++
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~~v 261 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCEEC
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCeee
Confidence 999999999999999999999999999999999999999999999999999987666543
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=283.68 Aligned_cols=204 Identities=37% Similarity=0.621 Sum_probs=179.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|+++++++.++++|..+||..|+++|.++++.+++|++++++||||||||++|++|+++.+..... +.
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--------~~ 112 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--------RL 112 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--------SS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--------Cc
Confidence 3467999999999999999999999999999999999999999999999999999999999998876532 24
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++|+.|+++.+.++.... ++.+..++|+.........+. .+++|+|+||++|.+++.+.. ...+.+++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~ 188 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALA-KKPHIIIATPGRLIDHLENTK--GFNLRALK 188 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHH-TCCSEEEECHHHHHHHHHHST--TCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhc-CCCCEEEECHHHHHHHHHcCC--CcCccccC
Confidence 79999999999999999999987654 688899999987665544443 458999999999999988643 23478899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceE
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHT 592 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~ 592 (848)
+|||||||++++++|...+..++..+++.+|+++||||++..+..+++.++.++..
T Consensus 189 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 189 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999876543
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=278.96 Aligned_cols=206 Identities=40% Similarity=0.641 Sum_probs=177.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~ 456 (848)
...+|+++++++.+++.|.++||..|+++|.++++.+++|+++++++|||||||++|++|+++.+...... ...+.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~ 98 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGL 98 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999998764321 12345
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||++||++||.|+++.+.++.... ++.+..++|+.........+ .+++|+|+||++|.+++.... ...+.+++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~ 173 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETV--SFHATDLQ 173 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCS--SCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcC--Cccccccc
Confidence 79999999999999999999987643 68889999998776555544 358999999999999887653 24467899
Q ss_pred EEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 537 ~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
+|||||||++++++|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 228 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPE 228 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCE
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999999999999999999999999999887543
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.98 E-value=6e-32 Score=283.81 Aligned_cols=202 Identities=29% Similarity=0.517 Sum_probs=169.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.++++|.++||..|+++|.++|+.+++++++++++|||||||++|++|+++.+.... .+.+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~ 100 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQ 100 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998764321 2347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.+++... ++.+..++|+.........+..+.++|+|+||++|.+++... ...+..+++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---~~~~~~~~~ 176 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YLSPKWIKM 176 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTT---SSCSTTCCE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC---CcCcccCcE
Confidence 9999999999999999999987644 678888999888776666666666899999999999999765 345778999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
|||||||++++++|...+..++..+++.+|+++||||+++.+..++..+++.+.
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~ 230 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPI 230 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCE
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCE
Confidence 999999999999999999999999999999999999999999999999987543
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.98 E-value=9.5e-32 Score=280.87 Aligned_cols=200 Identities=32% Similarity=0.488 Sum_probs=176.1
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+.+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~ 94 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQ 94 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998775332 2347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.++....+++.+..++|+.........+. +++|+|+||++|.+++... ...+.++++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~---~~~~~~~~~ 169 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELD---YLNPGSIRL 169 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTT---SSCGGGCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcC---CcccccCCE
Confidence 99999999999999999999987666889999999988765554443 4899999999999998765 345678999
Q ss_pred EEEeccccccccc-chhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccc
Q 003100 538 LVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKRE 590 (848)
Q Consensus 538 lVIDEAH~ll~~g-f~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~ 590 (848)
|||||||++++++ |...+..++..+++.+|+++||||+++.+..++..++..+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p 223 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDP 223 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCC
Confidence 9999999999998 9999999999999999999999999999988888877643
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.98 E-value=6.1e-32 Score=279.89 Aligned_cols=202 Identities=32% Similarity=0.530 Sum_probs=176.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~v 458 (848)
.+|+++++++.++++|.++||..|+++|.++++.+++++++++++|||||||++|++|+++.+.... .+.++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~ 75 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQA 75 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceE
Confidence 5699999999999999999999999999999999999999999999999999999999998764321 23479
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCC---CceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 459 LILCPTRELASQIAAEAIALLKNHD---GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 459 LIL~PTreLa~Qi~~~l~~l~~~~~---~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
||++||++|+.|+++.+.++..... ++.+..++|+.........+. .+++|+|+||++|.+++... ...+.++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~ 151 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQ---ALDVHTA 151 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTT---CCCGGGC
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcC---CCCcCcc
Confidence 9999999999999999999886543 577888999887654444333 45899999999999998765 3456789
Q ss_pred cEEEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccceE
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREHT 592 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~ 592 (848)
++|||||||++.+++|...+..++..+++.+|+++||||++.++..+++.++.++..
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTF 208 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEE
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeE
Confidence 999999999999999999999999999999999999999999999999999876543
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.98 E-value=1.7e-31 Score=332.51 Aligned_cols=324 Identities=17% Similarity=0.181 Sum_probs=220.8
Q ss_pred CCCcHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~ 477 (848)
..|+|+|.+++..++. +..+|++++||+|||++++..+...+.... . .++|||||+ .|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~--------~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-A--------ERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-C--------CCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-C--------CeEEEEeCH-HHHHHHHHHHHH
Confidence 3599999999998886 458999999999999997766655443221 1 159999999 999999999977
Q ss_pred HhhcCCCceEEEEeCCcchhHhhhh-hhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchh-h-
Q 003100 478 LLKNHDGIGVLTLVGGTRFKVDQRR-LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK-D- 554 (848)
Q Consensus 478 l~~~~~~i~v~~l~gg~~~~~~~~~-l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~-~- 554 (848)
.+ ++.+..+.++......... ......+|+|+|++.|....... ..+...++++|||||||++.+.+... .
T Consensus 222 ~f----~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~--~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF----NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL--EHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS----CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT--HHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh----CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH--HHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 65 4555555444322111110 11124699999999886422111 01234578999999999997654221 1
Q ss_pred HHHHHHhcCccceeEEEeccCCh----HHHHHHHHH----------------------------hccce-----------
Q 003100 555 VENIVDCLPRRRQSLLFSATMPK----EVRRISQLV----------------------------LKREH----------- 591 (848)
Q Consensus 555 l~~Il~~l~~~~Q~ll~SATl~~----~v~~l~~~~----------------------------l~~~~----------- 591 (848)
+..+.....+..+++++|||+.. ++..+.... .....
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 22222222345579999999732 111111110 00000
Q ss_pred ----------------------------------------EEEeecCCCcccccce-eec--------------------
Q 003100 592 ----------------------------------------TYIDTVGLGSVETPVK-IKQ-------------------- 610 (848)
Q Consensus 592 ----------------------------------------~~i~~~~~~~~~~~~~-v~q-------------------- 610 (848)
..+..........+.. +..
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 0000000000000000 000
Q ss_pred -------------------------ccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH-hccce
Q 003100 611 -------------------------SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE-MKMNV 664 (848)
Q Consensus 611 -------------------------~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~-~~~~v 664 (848)
....+....|...+..++.. .++.++||||+++..++.++..|.. .++.+
T Consensus 456 ~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 456 ARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp CCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred hhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 00122344577778777776 3678999999999999999999994 69999
Q ss_pred eeecCCcchhhHHHHHHHHhcCC--ceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeC
Q 003100 665 REMYSRKPQLYRDRISEEFRASK--RLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 665 ~~lhg~ls~~~R~~i~~~F~~G~--~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
..+||+|++.+|..+++.|++|+ +.|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++..
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999887666654
Q ss_pred c
Q 003100 743 P 743 (848)
Q Consensus 743 ~ 743 (848)
.
T Consensus 612 ~ 612 (968)
T 3dmq_A 612 Y 612 (968)
T ss_dssp E
T ss_pred c
Confidence 3
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=2.2e-31 Score=275.54 Aligned_cols=203 Identities=32% Similarity=0.542 Sum_probs=179.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
...|+++++++.++++|.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+.+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~ 84 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVS 84 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEE
Confidence 3569999999999999999999999999999999999999999999999999999999999776321 12347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.++....+++.+..++|+.........+....++|+|+||++|..++... ...+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC---CCCcccCCE
Confidence 99999999999999999999987766889999999988777766666666899999999999998765 345788999
Q ss_pred EEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 538 lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
|||||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe
Confidence 99999999987 5889999999999999999999999999999999988887543
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=5.3e-31 Score=273.30 Aligned_cols=200 Identities=33% Similarity=0.544 Sum_probs=169.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~ 457 (848)
..+|+++++++.+++.|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.... .+.+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~ 84 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQ 84 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998774321 2347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccE
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~ 537 (848)
+||++||++|+.|+++.+.++.... ++.+..++|+.........+.. ++|+|+||++|.+++... ...+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~---~~~~~~~~~ 158 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRR---RFRTDKIKM 158 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhC---CcchhhCcE
Confidence 9999999999999999999987654 7888899998876655444432 899999999999998875 355788999
Q ss_pred EEEecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 538 lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
|||||||++.+++|...+..++..+++..|+++||||+++.+..+++.++..+.
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~ 212 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV 212 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCE
Confidence 999999999999999999999999999999999999999999999999887544
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=3.8e-31 Score=280.08 Aligned_cols=210 Identities=36% Similarity=0.547 Sum_probs=178.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCC-CCCCCC
Q 003100 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPP 455 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~-~~~~~~ 455 (848)
...+|+++++++.++++|..+||..|+++|.++|+.+++++|++++||||||||++|++|+++++........ .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 3467999999999999999999999999999999999999999999999999999999999999875432110 011234
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCc
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l 535 (848)
+++|||+||++||.|+++.+.++.... ++.+..++|+.........+. .+++|+|+||++|.+++... ...+.++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~ 175 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQ-MGCHLLVATPGRLVDFIEKN---KISLEFC 175 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHS-SCCSEEEECHHHHHHHHHTT---SBCCTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhC-CCCCEEEECHHHHHHHHHcC---CCChhhC
Confidence 579999999999999999999987654 678889999988766555554 45899999999999999876 3557889
Q ss_pred cEEEEecccccccccchhhHHHHHHh--cCc--cceeEEEeccCChHHHHHHHHHhccce
Q 003100 536 KMLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 536 ~~lVIDEAH~ll~~gf~~~l~~Il~~--l~~--~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
++|||||||++++++|...+..++.. ++. .+|+++||||+++.+..++..++.++.
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 235 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYI 235 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99999999999999999999999985 444 789999999999999999999987543
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=8.4e-31 Score=268.00 Aligned_cols=200 Identities=37% Similarity=0.571 Sum_probs=174.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q 003100 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (848)
Q Consensus 380 ~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vL 459 (848)
+|+++++++.+++.|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+..... ...+.++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEE
Confidence 5999999999999999999999999999999999999999999999999999999999988753211 12345799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEE
Q 003100 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (848)
Q Consensus 460 IL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lV 539 (848)
|++||++|+.|+++.+.+++. .+.+..++|+.........+.. +++|+|+||++|.+++... ...+.++++||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iV 149 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQG---VLDLSRVEVAV 149 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHT---SSCCTTCSEEE
T ss_pred EEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcC---CcchhhceEEE
Confidence 999999999999999998864 3678889998877655555443 4899999999999998875 35578899999
Q ss_pred EecccccccccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhccce
Q 003100 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLKREH 591 (848)
Q Consensus 540 IDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~~~~ 591 (848)
|||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++..+.
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 201 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPV 201 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCE
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999887543
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=5.9e-29 Score=289.37 Aligned_cols=322 Identities=18% Similarity=0.196 Sum_probs=234.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
+|.. ++++|.-+.-.+..|+ |..+.||+|||+++.+|++-..+.+ ..+.|++||+.||.|-++++.
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHH
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHH
Confidence 4654 8999999888888887 9999999999999999997544432 258999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCc--------------------------------------------------chhHhhhhhhcC
Q 003100 477 ALLKNHDGIGVLTLVGGT--------------------------------------------------RFKVDQRRLESD 506 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~--------------------------------------------------~~~~~~~~l~~~ 506 (848)
.++.+. |+.|++++... ... +.+...
T Consensus 138 ~l~~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-err~aY-- 213 (822)
T 3jux_A 138 PVYLFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI-TRKEAY-- 213 (822)
T ss_dssp HHHHHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC-CHHHHH--
T ss_pred HHHHHh-CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH-HHHHHh--
Confidence 998876 89999988721 111 111111
Q ss_pred CCcEEEeChHHH-HHHHHhccCc---ccccCCccEEEEecccccc-cc--------c-------ch--------------
Q 003100 507 PCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL-DL--------G-------FR-------------- 552 (848)
Q Consensus 507 ~~~IIV~TPgrL-l~~L~~~~~~---~~~l~~l~~lVIDEAH~ll-~~--------g-------f~-------------- 552 (848)
.|||+++|..-| .++|..+-.. ..-...+.+.||||+|.++ |. | ..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 389999998877 4566544211 1224678999999999853 10 0 00
Q ss_pred ------------------------------------hhHHHHHHhc------Cc--------------------------
Q 003100 553 ------------------------------------KDVENIVDCL------PR-------------------------- 564 (848)
Q Consensus 553 ------------------------------------~~l~~Il~~l------~~-------------------------- 564 (848)
..+..|...+ .+
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 0000111100 00
Q ss_pred -----------------------------------cceeEEEeccCChHHHHHHHHHhccceEEEeecCCCcccccceee
Q 003100 565 -----------------------------------RRQSLLFSATMPKEVRRISQLVLKREHTYIDTVGLGSVETPVKIK 609 (848)
Q Consensus 565 -----------------------------------~~Q~ll~SATl~~~v~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~ 609 (848)
-.++.+||+|+..+...+...+. .....|.. . .....+.
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPt---n--kp~~R~d 447 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-MEVVVIPT---H--KPMIRKD 447 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-CCEEECCC---S--SCCCCEE
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-CeEEEECC---C--CCcceee
Confidence 02578899999888777766653 22222221 1 1111222
Q ss_pred c-ccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCc
Q 003100 610 Q-SCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKR 688 (848)
Q Consensus 610 q-~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~ 688 (848)
+ ..+......|+..+...+..... .+.++||||+|++.++.++..|...|+.+..+||+..+.++..+...|+.|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g-- 523 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG-- 523 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--
Confidence 2 34556778888888888876432 245899999999999999999999999999999996665555555556555
Q ss_pred eEEEecCCccccccCC--------CCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchh
Q 003100 689 LILVTSDVSARGMDYP--------DVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEE 746 (848)
Q Consensus 689 ~VLVaTdvl~rGlDip--------~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~ 746 (848)
.|+|||++++||+||+ ++.+||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 524 ~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 524 MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 6999999999999998 667999999999999999999999999999999999998774
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=3.1e-30 Score=299.73 Aligned_cols=322 Identities=15% Similarity=0.153 Sum_probs=218.8
Q ss_pred CCCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..|+|+|.+++.++. .++++|++++||+|||+++ +.++..+..... ..++|||||+ .|+.||.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~~--------~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKENE--------LTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTTC--------CSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcCC--------CCCEEEEccH-HHHHHHHHHH
Confidence 359999999998773 5789999999999999985 445555543321 1258999995 6889999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhH
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l 555 (848)
.+++ +++.+..+.|+... .....++|+|+||+.|..... +....+++||+||||++.+.+ ...
T Consensus 106 ~~~~---~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~ 168 (500)
T 1z63_A 106 SKFA---PHLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKI 168 (500)
T ss_dssp HHHC---TTSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHH
T ss_pred HHHC---CCceEEEEecCchh------ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHH
Confidence 9875 35667777666532 112247999999999875443 223468999999999997653 334
Q ss_pred HHHHHhcCccceeEEEeccCCh-HHHHH---HHH---------------------------------HhccceEEEeecC
Q 003100 556 ENIVDCLPRRRQSLLFSATMPK-EVRRI---SQL---------------------------------VLKREHTYIDTVG 598 (848)
Q Consensus 556 ~~Il~~l~~~~Q~ll~SATl~~-~v~~l---~~~---------------------------------~l~~~~~~i~~~~ 598 (848)
...+..++ ..+.+++|||+.. ....+ ... .+. +..+.....
T Consensus 169 ~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~ 246 (500)
T 1z63_A 169 FKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKY 246 (500)
T ss_dssp HHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTT
T ss_pred HHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeeccc
Confidence 45555554 4567999999843 12211 111 010 111000000
Q ss_pred C--Ccccccceeecc------------c--------------------------------------------ccCChhhH
Q 003100 599 L--GSVETPVKIKQS------------C--------------------------------------------LVAPHELH 620 (848)
Q Consensus 599 ~--~~~~~~~~v~q~------------~--------------------------------------------~~~~~~~k 620 (848)
. .....+...... | .......|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 000000000000 0 00112345
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-ccceeeecCCcchhhHHHHHHHHhcC-Cce-EEEecCCc
Q 003100 621 FQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRAS-KRL-ILVTSDVS 697 (848)
Q Consensus 621 ~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~ls~~~R~~i~~~F~~G-~~~-VLVaTdvl 697 (848)
+..+..++..... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|+++ ... +|+||+++
T Consensus 327 ~~~l~~~l~~~~~--~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~ 404 (500)
T 1z63_A 327 MIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 404 (500)
T ss_dssp HHHHHHHHHHHHT--TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC
T ss_pred HHHHHHHHHHHHc--cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc
Confidence 5666666666542 5679999999999999999999885 99999999999999999999999998 454 79999999
Q ss_pred cccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceE--EEEeCcc--hhhHHHHh
Q 003100 698 ARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG--VLLLAPW--EEYFLDDL 752 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~--i~l~~~~--e~~~l~~L 752 (848)
++|+|+|++++||+||+|+++..|+||+||++|.|+.+.+ +.|++.. |...+..+
T Consensus 405 ~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 405 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp -CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred cCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999987655 4444442 34444433
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=274.20 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=171.7
Q ss_pred ccCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCC
Q 003100 378 QKRFDEC----GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (848)
Q Consensus 378 ~~~f~~l----~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~ 453 (848)
..+|+++ ++++.++++|.++||..|+++|.++|+.+++|++++++||||||||++|++|+++.+.... .
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~ 96 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-------N 96 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-------S
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-------c
Confidence 3567776 8999999999999999999999999999999999999999999999999999998875321 2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 454 ~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
.+.++||++||++||.|+++.+.+++... ++.+..++|+.............+++|+|+||++|.+++..... ...+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~ 174 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP-GIDLA 174 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSC-SCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCC-Ccccc
Confidence 24579999999999999999999987654 67777777776544433344456789999999999999976532 24578
Q ss_pred CccEEEEeccccccc---ccchhhHHHHHHhc-CccceeEEEeccCChHHHHHHHHHhccceE
Q 003100 534 GLKMLVLDEADHLLD---LGFRKDVENIVDCL-PRRRQSLLFSATMPKEVRRISQLVLKREHT 592 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~---~gf~~~l~~Il~~l-~~~~Q~ll~SATl~~~v~~l~~~~l~~~~~ 592 (848)
++++|||||||++++ .+|...+..++..+ ++..|+++||||++.++..+++.+++++..
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 899999999999998 46888888888765 457899999999999999999999875443
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=6.4e-29 Score=307.78 Aligned_cols=319 Identities=14% Similarity=0.144 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHhC--------------CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH
Q 003100 401 QMTRVQEATLSACLE--------------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~--------------g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre 466 (848)
.|+++|.+|++.++. +++++++++||||||+++ ++++..+.... ...++|||+||++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHH
Confidence 599999999998875 368999999999999996 66664442211 1237999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccc
Q 003100 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (848)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~l 546 (848)
|+.|+.+.+..+... .+.++.+.......+...+++|+|+||++|..++...... ..+..+.+||+||||++
T Consensus 342 L~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~-~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDL-PVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp CCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCC-GGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccch-hccccccEEEEEccchh
Confidence 999999998876532 1234444443444454456899999999999988654211 23457889999999997
Q ss_pred ccccchhhHHHHHHhcCccceeEEEeccCChHHH-----HHHHHHhc----------------cceEEEeecCCCcc---
Q 003100 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKEVR-----RISQLVLK----------------REHTYIDTVGLGSV--- 602 (848)
Q Consensus 547 l~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~-----~l~~~~l~----------------~~~~~i~~~~~~~~--- 602 (848)
... ..+..|...++ ..++++||||+..... .....+.. .+.. +........
T Consensus 414 ~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~-v~y~~v~~~~~~ 488 (1038)
T 2w00_A 414 QFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFK-VDYNDVRPQFKS 488 (1038)
T ss_dssp HHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEE-EEECCCCGGGHH
T ss_pred cch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeE-EEEEeccchhhh
Confidence 542 33556667765 4799999999864321 11111110 0111 100000000
Q ss_pred -------cccceeecccccCChhhHHHHHHHHHHHHhhC--------CCCceEEEEEecchHHHHHHHHHHHhc------
Q 003100 603 -------ETPVKIKQSCLVAPHELHFQILHHLLKEHILG--------TPDYKVIVFCSTGMVTSLLYLLLREMK------ 661 (848)
Q Consensus 603 -------~~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~--------~~~~kiLVF~~s~~~a~~l~~~L~~~~------ 661 (848)
.....+.+..... ...+...+...+..++.. ..+.++||||+|+..|..++..|.+.+
T Consensus 489 ~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 489 LETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp HHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 0000011111122 233344443333232211 134689999999999999999998875
Q ss_pred ------cce-eeecCC----------c----------ch-----------------------------hhHHHHHHHHhc
Q 003100 662 ------MNV-REMYSR----------K----------PQ-----------------------------LYRDRISEEFRA 685 (848)
Q Consensus 662 ------~~v-~~lhg~----------l----------s~-----------------------------~~R~~i~~~F~~ 685 (848)
+.+ ..+|+. + ++ ..|..++++|++
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 444 455542 2 21 147889999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCC----ceEEEEeCc
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKE----GEGVLLLAP 743 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~----G~~i~l~~~ 743 (848)
|+++|||+|+++.+|+|+|.+ .|+.+|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 648 g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 648 QDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred CCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999999999999999 788999999999999999999998753 667766654
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=292.95 Aligned_cols=331 Identities=14% Similarity=0.172 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003100 400 IQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l 475 (848)
..|+|+|.+++.+++ .++++|++.+||+|||++.+..+...+...... ..+||||| ..|+.||.+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~--------~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN--------GPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC--------SCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC--------CCEEEEEC-chHHHHHHHHH
Confidence 369999999998776 789999999999999998554443333332211 14899999 67889999999
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhh-----------hcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRL-----------ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l-----------~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
.+++ +++.+.+++|+.......... ....++|+|+|++.+......- ....+++|||||||
T Consensus 306 ~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-----~~~~w~~vIvDEaH 377 (800)
T 3mwy_W 306 EKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-----GSIKWQFMAVDEAH 377 (800)
T ss_dssp HHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-----HTSEEEEEEETTGG
T ss_pred HHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-----hcCCcceeehhhhh
Confidence 8875 467788888876544332221 2235789999999997654322 22368899999999
Q ss_pred ccccccchhhHHHHHHhcCccceeEEEeccCC----hHHHHHHHHHhcc-----------------------------ce
Q 003100 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMP----KEVRRISQLVLKR-----------------------------EH 591 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~----~~v~~l~~~~l~~-----------------------------~~ 591 (848)
++.+. .......+..+. ....+++|||+- .++..+...+... +.
T Consensus 378 ~lkn~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 378 RLKNA--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp GGCCS--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred hhcCc--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 98653 344555566654 345688999972 2222222221000 00
Q ss_pred EEEeecCCCcccccceee-------------------------------------------------cccc---------
Q 003100 592 TYIDTVGLGSVETPVKIK-------------------------------------------------QSCL--------- 613 (848)
Q Consensus 592 ~~i~~~~~~~~~~~~~v~-------------------------------------------------q~~~--------- 613 (848)
..-..........+.... +.+.
T Consensus 455 ~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~ 534 (800)
T 3mwy_W 455 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVL 534 (800)
T ss_dssp EEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHC
T ss_pred HhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHH
Confidence 000000000000000000 0000
Q ss_pred ----------------cCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHH
Q 003100 614 ----------------VAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRD 677 (848)
Q Consensus 614 ----------------~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~ 677 (848)
......|+..|..+|.... ..+.++||||.....+..+...|...++.+..+||+++..+|.
T Consensus 535 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 535 QKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK--KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRR 612 (800)
T ss_dssp CCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHH
T ss_pred HhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh--hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 0012346666777777653 3567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCc---eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCce--EEEEeCcc--hhhHHH
Q 003100 678 RISEEFRASKR---LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE--GVLLLAPW--EEYFLD 750 (848)
Q Consensus 678 ~i~~~F~~G~~---~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~--~i~l~~~~--e~~~l~ 750 (848)
.+++.|+++.. .+|++|.+++.|||++.+++||+||+|+++..++||+||++|.|+... ++.|++.. |...++
T Consensus 613 ~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~ 692 (800)
T 3mwy_W 613 ISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692 (800)
T ss_dssp HHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHH
T ss_pred HHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH
Confidence 99999998654 489999999999999999999999999999999999999999997654 44555543 455554
Q ss_pred Hh
Q 003100 751 DL 752 (848)
Q Consensus 751 ~L 752 (848)
.+
T Consensus 693 ~~ 694 (800)
T 3mwy_W 693 RA 694 (800)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.2e-26 Score=277.69 Aligned_cols=327 Identities=15% Similarity=0.175 Sum_probs=217.4
Q ss_pred CCcHHHHHHHHHHh---------CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHH
Q 003100 401 QMTRVQEATLSACL---------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (848)
Q Consensus 401 ~~t~iQ~~aI~~il---------~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi 471 (848)
.|+|+|.+++..+. .+..+|++.+||+|||++.+..+ ..++....... ....++|||+|+ .|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i-~~l~~~~~~~~---p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI-WTLLKQSPDCK---PEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH-HHHHHCCTTSS---CSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHH-HHHHHhCcccc---CCCCcEEEEecH-HHHHHH
Confidence 59999999998874 45679999999999999855544 44444322111 011258999997 889999
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchhHh--hhhhhc-----CCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccc
Q 003100 472 AAEAIALLKNHDGIGVLTLVGGTRFKVD--QRRLES-----DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~--~~~l~~-----~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH 544 (848)
.+++.+++.. .+.+..++++...... ...... ..++|+|+|++.+...... +....+++||+||||
T Consensus 130 ~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 130 YNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTSCCCEEEETTGG
T ss_pred HHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcCCccEEEEECce
Confidence 9999998754 3556666666543211 112211 1478999999998765421 223578999999999
Q ss_pred ccccccchhhHHHHHHhcCccceeEEEeccCChH----HHHHH---------------HHH-------------------
Q 003100 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE----VRRIS---------------QLV------------------- 586 (848)
Q Consensus 545 ~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~----v~~l~---------------~~~------------------- 586 (848)
++.+.. ......+..+. ....+++|||+-.+ +..+. ..+
T Consensus 203 ~ikn~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 203 RLKNSD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp GCCTTC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred ecCChh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 997643 23333444443 34679999997321 10000 000
Q ss_pred -----------h-----c---------cceEEEee--cCCCcccc-----------------cce-----------eecc
Q 003100 587 -----------L-----K---------REHTYIDT--VGLGSVET-----------------PVK-----------IKQS 611 (848)
Q Consensus 587 -----------l-----~---------~~~~~i~~--~~~~~~~~-----------------~~~-----------v~q~ 611 (848)
+ + -|...... ........ ... +++.
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 0 0 00000000 00000000 000 0000
Q ss_pred --------------------------------cccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Q 003100 612 --------------------------------CLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLRE 659 (848)
Q Consensus 612 --------------------------------~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~ 659 (848)
........|+..+..++.... ...+.++||||+....++.+...|..
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR-TTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH-HHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh-hcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 000011334455555554432 12467999999999999999999999
Q ss_pred hccceeeecCCcchhhHHHHHHHHhcCCc---eEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCce
Q 003100 660 MKMNVREMYSRKPQLYRDRISEEFRASKR---LILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGE 736 (848)
Q Consensus 660 ~~~~v~~lhg~ls~~~R~~i~~~F~~G~~---~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~ 736 (848)
.++.+..+||++++.+|..+++.|+++.. .+|++|.++++|||++++++||+||+|+++..|.|++||++|.|+...
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999875 489999999999999999999999999999999999999999997654
Q ss_pred --EEEEeCc
Q 003100 737 --GVLLLAP 743 (848)
Q Consensus 737 --~i~l~~~ 743 (848)
++.|++.
T Consensus 519 v~v~~lv~~ 527 (644)
T 1z3i_X 519 CYIYRLLST 527 (644)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEEEC
Confidence 4445554
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=1.8e-25 Score=267.80 Aligned_cols=131 Identities=19% Similarity=0.212 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.+...+...|..... .+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|+.|.+.|||||++++
T Consensus 423 ~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~ 500 (664)
T 1c4o_A 423 NQILDLMEGIRERAA--RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 500 (664)
T ss_dssp THHHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC
T ss_pred chHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh
Confidence 344445455554432 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCC-----CCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHh
Q 003100 699 RGMDYPDVTSVVQVGI-----PPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDL 752 (848)
Q Consensus 699 rGlDip~V~~VI~yd~-----P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L 752 (848)
+|+|+|+|++||+++. |.+..+|+||+|||||.+ .|.|++|+.+.+..+.+.+
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 9999999999999997 899999999999999985 8999999988765544333
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=7e-24 Score=250.96 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=110.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
+|+ .||++|..+++.+++|+ |++++||+|||++|++|++...+.. ..|+|++||++||.|.++++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHHH
Confidence 799 89999999999999998 9999999999999999996544321 258999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHH-HHHHHhccC---cccccC---CccEEEEecccccc
Q 003100 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLM---GLKMLVLDEADHLL 547 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrL-l~~L~~~~~---~~~~l~---~l~~lVIDEAH~ll 547 (848)
.++.+. ++.+.+++||.+..... .. .+++|+|+||++| +++|..+.. ....++ .+.++||||||.|+
T Consensus 142 ~l~~~l-GLsv~~i~Gg~~~~~r~--~a-y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 142 PVYRGL-GLSVGVIQHASTPAERR--KA-YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHTT-TCCEEECCTTCCHHHHH--HH-HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHhc-CCeEEEEeCCCCHHHHH--HH-cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999865 89999999998743222 22 2489999999999 899887621 123466 89999999999986
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1e-24 Score=261.10 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc
Q 003100 619 LHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA 698 (848)
Q Consensus 619 ~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~ 698 (848)
.+...+...|.... ..+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|+.|.+.|||||++++
T Consensus 429 ~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~ 506 (661)
T 2d7d_A 429 GQIDDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506 (661)
T ss_dssp THHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS
T ss_pred chHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh
Confidence 34444545555443 2457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEcCC-----CCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHH
Q 003100 699 RGMDYPDVTSVVQVGI-----PPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLD 750 (848)
Q Consensus 699 rGlDip~V~~VI~yd~-----P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~ 750 (848)
+|+|+|+|++||+++. |.+..+|+||+|||||. ..|.|++|+++.+..+.+
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 9999999999999997 99999999999999998 689999999987654443
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=8.6e-25 Score=225.71 Aligned_cols=153 Identities=30% Similarity=0.443 Sum_probs=135.4
Q ss_pred eeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC
Q 003100 607 KIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 607 ~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G 686 (848)
.+.+.++.++...|+..+..++... .++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 80 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG 80 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 3455666778889999999998754 467999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCC
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLP 763 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~ 763 (848)
..+|||||+++++|+|+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..+++.+++ ..+..+..+
T Consensus 81 ~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 81 EVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888877764 334444443
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=9.9e-25 Score=215.66 Aligned_cols=147 Identities=28% Similarity=0.499 Sum_probs=138.3
Q ss_pred ccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHH
Q 003100 604 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 683 (848)
Q Consensus 604 ~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F 683 (848)
...++.|.++.++...|+..|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4456889999999999999999998864 467999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 684 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 684 ~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|...|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++.+..+++.+++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888887765
No 79
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=2.6e-24 Score=233.36 Aligned_cols=209 Identities=25% Similarity=0.377 Sum_probs=156.7
Q ss_pred eeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcC
Q 003100 607 KIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRAS 686 (848)
Q Consensus 607 ~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G 686 (848)
.+.+.++.++...|+..+..++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g 77 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG 77 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC
Confidence 3567788888899999999998865 367999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc---CCCCcCCCC
Q 003100 687 KRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD---LPLDKLQLP 763 (848)
Q Consensus 687 ~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~---~~l~~~~~~ 763 (848)
.++|||||+++++|+|+|+|++||+||+|.+...|+||+|||||.|+.|.|++|+++.+..+++.+++ ..++.+..+
T Consensus 78 ~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 78 EVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp SCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred CceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888877765 344444444
Q ss_pred CCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCC
Q 003100 764 HLNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQR 824 (848)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~~~~e~~~~s~l~~y~~~~~~~~~~~~~~~l~~~la~s~GL~~ 824 (848)
.........+...+..+.. +....+..|........ +......++.+++..+|...
T Consensus 158 ~~~ei~~~~~~~~~~~l~~-~~~~~~~~f~~~~~~l~----~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 158 TPEEVLEAKWRHLLARLAR-VPEKDYRLYQDFAGRLF----AEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SCHHHHHTTHHHHHHHH----HHTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHH----hcCcHHHHHHHHHHHhcCCc
Confidence 3322223333333333322 22223333332222221 11345666777777766554
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=214.97 Aligned_cols=147 Identities=31% Similarity=0.442 Sum_probs=130.9
Q ss_pred ccceeecccccCChhh-HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHH
Q 003100 604 TPVKIKQSCLVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEE 682 (848)
Q Consensus 604 ~~~~v~q~~~~~~~~~-k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~ 682 (848)
++..+.|.++.++... |+..|..++... +.+++||||+++..++.++..|...++.+..+||+|++.+|..+++.
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~ 79 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI----TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQR 79 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS----CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 4557888888888655 888888877653 56799999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecCCccccccCCCCCeeEEcCCC------CChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 683 FRASKRLILVTSDVSARGMDYPDVTSVVQVGIP------PDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 683 F~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P------~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|++|...|||||+++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.|++|+.+.+..++..+++
T Consensus 80 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 80 FRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp HHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHH
T ss_pred HHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999998877777654
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.1e-24 Score=215.34 Aligned_cols=146 Identities=25% Similarity=0.343 Sum_probs=134.0
Q ss_pred cceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHh
Q 003100 605 PVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFR 684 (848)
Q Consensus 605 ~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~ 684 (848)
+..+.|.++.++...|+..|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 346788999999999999999988764 5679999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhcc
Q 003100 685 ASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 754 (848)
Q Consensus 685 ~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~~ 754 (848)
+|...|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.+++|+++. +..+++.+++
T Consensus 79 ~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~ 149 (172)
T 1t5i_A 79 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 149 (172)
T ss_dssp TTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 4566666654
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=5.9e-24 Score=214.72 Aligned_cols=148 Identities=29% Similarity=0.399 Sum_probs=123.7
Q ss_pred ccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHH
Q 003100 604 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 683 (848)
Q Consensus 604 ~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F 683 (848)
.+.++.|.++.++...|...|..+|... .++.++||||+++..++.++..|...++.+..+||++++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 4567899999999999999999998864 2567999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 684 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 684 ~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
++|...|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..+++.+.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877766654
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=5.2e-24 Score=210.83 Aligned_cols=144 Identities=32% Similarity=0.523 Sum_probs=127.9
Q ss_pred eeecccccCChhh-HHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc
Q 003100 607 KIKQSCLVAPHEL-HFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 607 ~v~q~~~~~~~~~-k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
.++|.++.++... |...|..++... +.+++||||++...++.++..|...++.+..+||++++.+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 78 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 78 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4677777777666 999999988864 56799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|...|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..++..+++
T Consensus 79 g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 79 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp TSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred CCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877777654
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=213.55 Aligned_cols=146 Identities=26% Similarity=0.420 Sum_probs=129.7
Q ss_pred ccceeecccccCChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHH
Q 003100 604 TPVKIKQSCLVAPHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF 683 (848)
Q Consensus 604 ~~~~v~q~~~~~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F 683 (848)
....+.|.++.++...|+..|..+|.. .+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|
T Consensus 26 ~~~~i~q~~~~~~~~~K~~~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F 100 (191)
T 2p6n_A 26 ASLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 100 (191)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCceEEEEEcChHHHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 456788888889999999988887764 245899999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcc-hhhHHHHhcc
Q 003100 684 RASKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPW-EEYFLDDLKD 754 (848)
Q Consensus 684 ~~G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~-e~~~l~~L~~ 754 (848)
++|+..|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++. +..+++.|++
T Consensus 101 ~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 101 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp HHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHH
T ss_pred hcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976 6666666544
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=3.6e-24 Score=213.07 Aligned_cols=144 Identities=31% Similarity=0.451 Sum_probs=131.9
Q ss_pred eeecccccCCh-hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhc
Q 003100 607 KIKQSCLVAPH-ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRA 685 (848)
Q Consensus 607 ~v~q~~~~~~~-~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~ 685 (848)
.+.|.++.++. ..|...|..++... .+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 78 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP----EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 78 (170)
Confidence 35677777777 78888888887653 46799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceEEEEeCcchhhHHHHhcc
Q 003100 686 SKRLILVTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEGVLLLAPWEEYFLDDLKD 754 (848)
Q Consensus 686 G~~~VLVaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~i~l~~~~e~~~l~~L~~ 754 (848)
|+..|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|+.|.+++|+.+.+..+++.+++
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999999988877777665
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=9e-22 Score=206.10 Aligned_cols=181 Identities=16% Similarity=0.223 Sum_probs=136.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHH
Q 003100 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (848)
Q Consensus 387 ~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTre 466 (848)
++.+.+.+.......++++|.++++.+..|++++++|+||||||++|.+++++.+..... ..++++|+++||++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRI 120 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchH
Confidence 334444455455556899999999999999999999999999999999999887765432 12347999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEeccccc
Q 003100 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (848)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~l 546 (848)
|+.|+++.+...+....+..++....... ......++|+|||||+|++++... +.++++|||||||++
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~~------l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEAG------IRGISHVIVDEIHER 188 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHHC------CTTCCEEEECCTTSC
T ss_pred HHHHHHHHHHHHhccccCceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHhh------hcCCcEEEEECCccC
Confidence 99999999887765544444444332221 111234789999999999998753 678999999999996
Q ss_pred -ccccch-hhHHHHHHhcCccceeEEEeccCChHHHHHHHHHhc
Q 003100 547 -LDLGFR-KDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVLK 588 (848)
Q Consensus 547 -l~~gf~-~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l~ 588 (848)
++.+|. ..+..++... ++.|+++||||++.+. +.+.+..
T Consensus 189 ~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~ 229 (235)
T 3llm_A 189 DINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFN 229 (235)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTS
T ss_pred CcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCC
Confidence 777777 4556666554 5789999999999876 5555443
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=5.6e-21 Score=224.03 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEE--ecCCccc
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILV--TSDVSAR 699 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLV--aTdvl~r 699 (848)
..+...|...+.. .++++||||+|....+.++..|.. +. ...++.. ..|..+++.|+.+. .||+ +|..+++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC------
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceec
Confidence 4455555554443 467999999999999999988864 23 3445443 46899999999865 5766 8899999
Q ss_pred cccCCC----CCeeEEcCCCCC----h--------------------------hHHHHHhhccCCCCCCceEEEEeC
Q 003100 700 GMDYPD----VTSVVQVGIPPD----R--------------------------EQYIHRLGRTGREGKEGEGVLLLA 742 (848)
Q Consensus 700 GlDip~----V~~VI~yd~P~s----~--------------------------~~yiQRiGRaGR~G~~G~~i~l~~ 742 (848)
|||+|+ +++||++++|.. + ..+.|.+||+-|....--+++++.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 999998 899999999831 1 224599999999754333344443
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=200.80 Aligned_cols=170 Identities=23% Similarity=0.281 Sum_probs=119.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHH-HHHHH
Q 003100 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ-IAAEA 475 (848)
Q Consensus 397 ~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Q-i~~~l 475 (848)
.....|+++|.++++.+++++++++++|||+|||++|+++++..+....... .+.++||++||++|+.| +.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~-----~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-----EPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT-----CCCCEEEEESSHHHHHHHHHHTH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc-----CCCcEEEEECHHHHHHHHHHHHH
Confidence 3455799999999999999999999999999999999999988776543111 12479999999999999 77788
Q ss_pred HHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCc---ccccCCccEEEEecccccccccch
Q 003100 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFR 552 (848)
Q Consensus 476 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~---~~~l~~l~~lVIDEAH~ll~~gf~ 552 (848)
..+... ++.+..++|+.........+.. .++|+|+||++|..++...... ...+.++++|||||||++.+.++.
T Consensus 104 ~~~~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 104 QPFLKK--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp HHHHTT--TSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHhcc--CceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 887654 6778888888765543333332 3799999999999988765210 134678999999999999876655
Q ss_pred hhHH-HHHHhc-------------CccceeEEEecc
Q 003100 553 KDVE-NIVDCL-------------PRRRQSLLFSAT 574 (848)
Q Consensus 553 ~~l~-~Il~~l-------------~~~~Q~ll~SAT 574 (848)
..+. .++... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 5543 222211 156899999998
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=5.1e-19 Score=208.03 Aligned_cols=315 Identities=16% Similarity=0.137 Sum_probs=194.2
Q ss_pred CCcHHHHHHHH----HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~----~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.++|+|.+++. ++..|+++++.||||+|||++|++|++.. +.++||++||++|+.|+.+++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 58999999776 45579999999999999999999999861 2379999999999999998888
Q ss_pred HHhhcCCCceEEEEeCCcchh---------------------------------Hhhh-----------------hhhcC
Q 003100 477 ALLKNHDGIGVLTLVGGTRFK---------------------------------VDQR-----------------RLESD 506 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~~~~---------------------------------~~~~-----------------~l~~~ 506 (848)
.+.... ++.+.++.|..++. .... .....
T Consensus 69 ~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 69 KIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 775443 67788777754320 0000 01122
Q ss_pred CCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccc-----------------------------------
Q 003100 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF----------------------------------- 551 (848)
Q Consensus 507 ~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf----------------------------------- 551 (848)
.++|||+|+..|++.+.... +. ......+|||||||.|.+ ..
T Consensus 148 ~adIVV~~~~~l~~~~~~~~-~~-~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l 224 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREF-ID-IDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQL 224 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTT-SC-CCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCEEEeCchHhcCHHHHHh-cC-CCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999998865442 11 124678999999999766 10
Q ss_pred --------------------hhhHHHH----------------------------HH-----------------------
Q 003100 552 --------------------RKDVENI----------------------------VD----------------------- 560 (848)
Q Consensus 552 --------------------~~~l~~I----------------------------l~----------------------- 560 (848)
...+..+ +.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~ 304 (551)
T 3crv_A 225 REVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEI 304 (551)
T ss_dssp TTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCT
T ss_pred HHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCH
Confidence 0000000 00
Q ss_pred -----hcCcc-ceeEEEeccCChHHHHHHHHHhcc-ceEE-EeecCCCcccccceeeccccc--CC------hhhHHHHH
Q 003100 561 -----CLPRR-RQSLLFSATMPKEVRRISQLVLKR-EHTY-IDTVGLGSVETPVKIKQSCLV--AP------HELHFQIL 624 (848)
Q Consensus 561 -----~l~~~-~Q~ll~SATl~~~v~~l~~~~l~~-~~~~-i~~~~~~~~~~~~~v~q~~~~--~~------~~~k~~~L 624 (848)
.+... +.+|++|||+.+ ...+...+.-. +... +......+.- ..... .++. .+ .......+
T Consensus 305 ~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~-l~v~~~~~~~~~~r~~~~~~~l 381 (551)
T 3crv_A 305 SYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYE-CYIGVDVTSKYDMRSDNMWKRY 381 (551)
T ss_dssp HHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEE-EEEECSCCCCTTTCCHHHHHHH
T ss_pred HHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceE-EEEeCCCCCccccCCHHHHHHH
Confidence 01112 678999999976 33344332221 1110 0011111110 11110 1110 00 02223455
Q ss_pred HHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEec--CCcccccc
Q 003100 625 HHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTS--DVSARGMD 702 (848)
Q Consensus 625 ~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaT--dvl~rGlD 702 (848)
...|...+.. .++++|||++|....+.++.. .+..+..-..+++ +..+++.|+.....||+|| ..+..|||
T Consensus 382 ~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD 454 (551)
T 3crv_A 382 ADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIE 454 (551)
T ss_dssp HHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSC
T ss_pred HHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccc
Confidence 5555554433 456999999999999888872 3333433223333 4667788864445899998 68999999
Q ss_pred CC-----CCCeeEEcCCCCC---------------------h-h--------HHHHHhhccCCCCCCceEEEEeCc
Q 003100 703 YP-----DVTSVVQVGIPPD---------------------R-E--------QYIHRLGRTGREGKEGEGVLLLAP 743 (848)
Q Consensus 703 ip-----~V~~VI~yd~P~s---------------------~-~--------~yiQRiGRaGR~G~~G~~i~l~~~ 743 (848)
+| .+++||..++|.. . . ...|-+||+-|....--+++++.+
T Consensus 455 ~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 455 LRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp CEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 99 3788998887731 1 1 124999999997654444445543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=4.5e-20 Score=198.35 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+++|.++++.++.+++.+++++||+|||+++++++...+.... .++|||+||++|+.|+.+++.+++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS----------SEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC----------CeEEEEECCHHHHHHHHHHHHHhcc
Confidence 699999999999999889999999999999999888776654321 2699999999999999999998854
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
. ....+..++++..... .....++|+|+||+.+..... ..+.++++|||||||++.+ ..+..++.
T Consensus 183 ~-~~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~~~------~~~~~~~~vIiDEaH~~~~----~~~~~il~ 247 (282)
T 1rif_A 183 F-SHAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVVKQPK------EWFSQFGMMMNDECHLATG----KSISSIIS 247 (282)
T ss_dssp C-CGGGEEECSTTCSSTT----CCCTTCSEEEECHHHHTTSCG------GGGGGEEEEEEETGGGCCH----HHHHHHTT
T ss_pred c-ccceEEEEeCCCcchh----hhccCCcEEEEchHHHHhhHH------HHHhhCCEEEEECCccCCc----ccHHHHHH
Confidence 3 3566777777765432 112347999999998754321 2356789999999999974 36778888
Q ss_pred hcCccceeEEEeccCChHHHHHH
Q 003100 561 CLPRRRQSLLFSATMPKEVRRIS 583 (848)
Q Consensus 561 ~l~~~~Q~ll~SATl~~~v~~l~ 583 (848)
.+.+..++++||||+++....+.
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~~~ 270 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp TCTTCCEEEEECSSCCTTSTTHH
T ss_pred HhhcCCeEEEEeCCCCCcchHHH
Confidence 88788999999999987654333
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=4.1e-17 Score=171.09 Aligned_cols=139 Identities=24% Similarity=0.226 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|+++|.+++..++++++++++++||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 46999999999999999999999999999999987776532 125899999999999999988873
Q ss_pred hcCCCce-EEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH
Q 003100 480 KNHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 480 ~~~~~i~-v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
++. +..+.|+... ..+|+|+||+.+...+... ...+++|||||||++.+..|. .+
T Consensus 157 ----~~~~v~~~~g~~~~----------~~~i~v~T~~~l~~~~~~~------~~~~~llIiDEaH~l~~~~~~----~i 212 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYV----QI 212 (237)
T ss_dssp ----CGGGEEEESSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEECSSCCCTTTHH----HH
T ss_pred ----CCCeEEEEeCCCCC----------cCCEEEEeHHHHHhhHHHh------cccCCEEEEECCccCCChHHH----HH
Confidence 566 7777776542 3699999999987766432 245899999999999876543 45
Q ss_pred HHhcCccceeEEEeccCChH
Q 003100 559 VDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 559 l~~l~~~~Q~ll~SATl~~~ 578 (848)
+..++ ..+++++|||++..
T Consensus 213 ~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 213 AQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHTCC-CSEEEEEEESCC--
T ss_pred HHhcc-CCEEEEEecCCCCC
Confidence 55554 57889999999764
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.73 E-value=2.2e-16 Score=187.54 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCcHHHHHHHH----HHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 401 ~~t~iQ~~aI~----~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|++.|.+.+. ++.+|+++++.||||+|||++|++|++.++.... .+++|++||++|+.|+.+++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~----------~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK----------LKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC----------CeEEEECCCHHHHHHHHHHHH
Confidence 47999998875 4567999999999999999999999999886532 379999999999999999998
Q ss_pred HHhhcCCCceEEEEeCCc
Q 003100 477 ALLKNHDGIGVLTLVGGT 494 (848)
Q Consensus 477 ~l~~~~~~i~v~~l~gg~ 494 (848)
.+.... .+++..++|+.
T Consensus 73 ~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 73 SLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp HHHHHS-CCCEEECCCHH
T ss_pred HHhhcc-CeEEEEEECCC
Confidence 886643 56776666644
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.66 E-value=2.4e-16 Score=168.52 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=99.4
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-ccceeeecCCcchhhHHHHHHHHhcC-Cce-EE
Q 003100 615 APHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-KMNVREMYSRKPQLYRDRISEEFRAS-KRL-IL 691 (848)
Q Consensus 615 ~~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~ls~~~R~~i~~~F~~G-~~~-VL 691 (848)
.....|+..+..+|..... .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|+++ ... +|
T Consensus 92 ~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp STTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 3456788889888887653 4679999999999999999999884 99999999999999999999999998 666 78
Q ss_pred EecCCccccccCCCCCeeEEcCCCCChhHHHHHhhccCCCCCCceE--EEEeCc
Q 003100 692 VTSDVSARGMDYPDVTSVVQVGIPPDREQYIHRLGRTGREGKEGEG--VLLLAP 743 (848)
Q Consensus 692 VaTdvl~rGlDip~V~~VI~yd~P~s~~~yiQRiGRaGR~G~~G~~--i~l~~~ 743 (848)
++|+++++|+|++++++||+||+|+++..|+||+||++|.|+.+.+ +.|++.
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999999987754 445543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.56 E-value=9.2e-08 Score=113.34 Aligned_cols=146 Identities=21% Similarity=0.299 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 403 TRVQEATLSACLEGKDAVVKAKTGTGKS--IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 403 t~iQ~~aI~~il~g~dvIv~a~TGSGKT--laflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
++.|+.+++.++.++.+++.|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 5566666644311 1234699999999999999888776654
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
.. ++..... .... .....+ ..++-.+|+.. . +.... .....+++||||||+. ++ ...+..++.
T Consensus 222 ~l-~l~~~~~-~~~~--~~~~Ti----h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~ 284 (608)
T 1w36_D 222 QL-PLTDEQK-KRIP--EDASTL----HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEASM-ID---LPMMSRLID 284 (608)
T ss_dssp HS-SCCSCCC-CSCS--CCCBTT----TSCC-------------CT---TSCCSCSEEEECSGGG-CB---HHHHHHHHH
T ss_pred cC-CCCHHHH-hccc--hhhhhh----HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechhh-CC---HHHHHHHHH
Confidence 32 2210000 0000 000000 11222233321 1 11111 1123689999999994 44 456788899
Q ss_pred hcCccceeEEEecc
Q 003100 561 CLPRRRQSLLFSAT 574 (848)
Q Consensus 561 ~l~~~~Q~ll~SAT 574 (848)
.++...|+|++--.
T Consensus 285 ~l~~~~~liLvGD~ 298 (608)
T 1w36_D 285 ALPDHARVIFLGDR 298 (608)
T ss_dssp TCCTTCEEEEEECT
T ss_pred hCCCCCEEEEEcch
Confidence 99999999987543
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.94 E-value=0.00052 Score=81.52 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..+++-|.+++.. .+..++|.|+.|||||.+ ++.-+.++..... .++-++|++++|+.+|.++.+++.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 366899999999999997 4444555554321 112369999999999999999999886
Q ss_pred h
Q 003100 480 K 480 (848)
Q Consensus 480 ~ 480 (848)
+
T Consensus 79 ~ 79 (647)
T 3lfu_A 79 G 79 (647)
T ss_dssp C
T ss_pred c
Confidence 4
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=5e-05 Score=86.76 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC----CC-CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHH
Q 003100 394 LTAAGYIQMTRVQEATLSACLE----GK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (848)
Q Consensus 394 L~~~g~~~~t~iQ~~aI~~il~----g~-dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa 468 (848)
..-+.|..|++-|++++..++. ++ .++|.|+.|||||.+ +..++..+...+. ..+++++||...|
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~---------~~il~~a~T~~Aa 87 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE---------TGIILAAPTHAAK 87 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC---------CCEEEEESSHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC---------ceEEEecCcHHHH
Confidence 3446788999999999987654 23 889999999999985 4555666655432 1489999999888
Q ss_pred HHHHHHH
Q 003100 469 SQIAAEA 475 (848)
Q Consensus 469 ~Qi~~~l 475 (848)
..+.+.+
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7766543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.82 E-value=9e-05 Score=88.02 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
...+++.|.+|+..++.+.-++|.||+|||||.+ +..++..+.... +.++|+++||...|.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTSS---------SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHcC---------CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999999888889999999999986 444555555321 226999999999999998877653
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.80 E-value=6.2e-05 Score=88.33 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.+++.|.+++..++.++.+++.|+.|+|||.. +..++..+... +.++++++||...|..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~----- 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL----------GLEVGLCAPTGKAARRLGEVT----- 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh-----
Confidence 48999999999999999999999999999985 33344444332 235899999999988766542
Q ss_pred cCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHH
Q 003100 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (848)
Q Consensus 481 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~ 560 (848)
+.....+. .+.. ... + . +... ......+++||||||+.+.. ..+..++.
T Consensus 253 ---~~~a~Tih----------~ll~----~~~-~--~----~~~~---~~~~~~~dvlIIDEasml~~----~~~~~Ll~ 301 (574)
T 3e1s_A 253 ---GRTASTVH----------RLLG----YGP-Q--G----FRHN---HLEPAPYDLLIVDEVSMMGD----ALMLSLLA 301 (574)
T ss_dssp ---TSCEEEHH----------HHTT----EET-T--E----ESCS---SSSCCSCSEEEECCGGGCCH----HHHHHHHT
T ss_pred ---cccHHHHH----------HHHc----CCc-c--h----hhhh---hcccccCCEEEEcCccCCCH----HHHHHHHH
Confidence 11111110 0000 000 0 0 0000 11233678999999998643 35667778
Q ss_pred hcCccceeEEEe
Q 003100 561 CLPRRRQSLLFS 572 (848)
Q Consensus 561 ~l~~~~Q~ll~S 572 (848)
.++...+++++-
T Consensus 302 ~~~~~~~lilvG 313 (574)
T 3e1s_A 302 AVPPGARVLLVG 313 (574)
T ss_dssp TSCTTCEEEEEE
T ss_pred hCcCCCEEEEEe
Confidence 888777777753
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00032 Score=85.41 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
+..+++.|.+|+..++.+.-++|.||.|||||.+ +..++.++.... +.++|+++||...|.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568999999999999887889999999999986 444555555421 126999999999999999888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.63 E-value=0.00016 Score=87.89 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
...+++.|.+|+..++.+.-++|.||.|+|||.+ +..++..+.... +.++|+++||...|.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTC---------SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC---------CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999888889999999999986 445555555321 226999999999999988877653
No 101
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.63 E-value=0.0001 Score=87.97 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~d-vIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.|.+-|.+|+..++..++ .||+||.|||||.+ +.-++.++.+.+ .++|+++||...|.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~~----------~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQG----------LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhCC----------CeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999887664 68999999999987 455565665532 26999999999999998887653
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.24 E-value=0.00099 Score=71.80 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 616 PHELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 616 ~~~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
....|+..|..+|.... ..+.++|||++..++.+.+..+|...++.+..+.|..... +.+ -.+....|.+.|.
T Consensus 106 ~~SGKf~~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k----~~~~~~~i~Llts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA----ANDFSCTVHLFSS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HcCccHHHHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh----cccCCceEEEEEC
Confidence 36789999999998764 3578999999999999999999999999999999995432 211 1245556655566
Q ss_pred Ccccccc-----CCCCCeeEEcCCCCChhHH-HHHhhccCCCC----CCceEEEEeCc
Q 003100 696 VSARGMD-----YPDVTSVVQVGIPPDREQY-IHRLGRTGREG----KEGEGVLLLAP 743 (848)
Q Consensus 696 vl~rGlD-----ip~V~~VI~yd~P~s~~~y-iQRiGRaGR~G----~~G~~i~l~~~ 743 (848)
...-|+| ....+.||.||.-+++..= +|.+-|+.|.| +.-.++.|++.
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 6666776 6789999999999999875 99999988874 24456667665
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.55 E-value=0.029 Score=62.21 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+|+|...+..+...+-+++..+-+.|||.+.+.-++..+... ++..+++++||+.-|..+.+.+..++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 58999999998765556689999999999997655554433321 234689999999999999888888876
Q ss_pred cCC
Q 003100 481 NHD 483 (848)
Q Consensus 481 ~~~ 483 (848)
..+
T Consensus 234 ~~P 236 (385)
T 2o0j_A 234 LLP 236 (385)
T ss_dssp HSC
T ss_pred hCh
Confidence 544
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.18 E-value=0.018 Score=56.23 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.0
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|+.+++.||+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 378899999999999984
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.12 E-value=0.03 Score=65.80 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
.|+|+|...+..+-..+-+++..+-|+|||.+...-++..+... ++..++++.|++..|..+...+..++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 48999999998775567789999999999997655444444322 123699999999999999988888876
Q ss_pred cCC
Q 003100 481 NHD 483 (848)
Q Consensus 481 ~~~ 483 (848)
..+
T Consensus 234 ~~p 236 (592)
T 3cpe_A 234 LLP 236 (592)
T ss_dssp TSC
T ss_pred hCh
Confidence 654
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.30 E-value=0.018 Score=64.88 Aligned_cols=106 Identities=25% Similarity=0.221 Sum_probs=60.2
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 497 (848)
-.++.|+.|+|||... ..+... . ..+|++||++++..+.+.+.+. +. ..
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~~--~---------~~lVlTpT~~aa~~l~~kl~~~-----~~--------~~-- 211 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVNF--E---------EDLILVPGRQAAEMIRRRANAS-----GI--------IV-- 211 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCCT--T---------TCEEEESCHHHHHHHHHHHTTT-----SC--------CC--
T ss_pred EEEEEcCCCCCHHHHH-----HHHhcc--C---------CeEEEeCCHHHHHHHHHHhhhc-----Cc--------cc--
Confidence 4579999999999952 222111 0 3699999999998887765321 00 00
Q ss_pred HhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEec
Q 003100 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (848)
Q Consensus 498 ~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SA 573 (848)
...+-|.|-+.++. +.. ......+++||||||-.+ +.+ .+..++..++. .+++++--
T Consensus 212 ---------~~~~~V~T~dsfL~---~~~--~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 212 ---------ATKDNVRTVDSFLM---NYG--KGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ---------CCTTTEEEHHHHHH---TTT--SSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTC-SEEEEEEC
T ss_pred ---------cccceEEEeHHhhc---CCC--CCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCC-CEEEEecC
Confidence 01223777666442 221 111124789999999854 433 33344444443 55555543
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.29 E-value=0.022 Score=67.94 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHh-CCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA-TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~-~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
.+++-|++++.. .+..++|.|..|||||.+ ++--+.+++.. +. .+-.+|+|+.|+.+|.++.+++...+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHH-HHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHH-HHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999986 367899999999999997 33334444433 21 12269999999999999999998876
Q ss_pred hcC--CCceEEE
Q 003100 480 KNH--DGIGVLT 489 (848)
Q Consensus 480 ~~~--~~i~v~~ 489 (848)
... .++.+.+
T Consensus 72 ~~~~~~~~~v~T 83 (673)
T 1uaa_A 72 GRKEARGLMIST 83 (673)
T ss_dssp CTTTTTTSEEEE
T ss_pred CcccccCCEEEe
Confidence 432 2344544
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.24 E-value=0.035 Score=66.92 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..|++-|++++.. ....++|.|..|||||.+ ++.-+.+++.... ..+-.+|+|+.|+.+|.++.+++..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999976 356899999999999997 4444445554321 112369999999999999999998876
Q ss_pred hcC-CCceEEE
Q 003100 480 KNH-DGIGVLT 489 (848)
Q Consensus 480 ~~~-~~i~v~~ 489 (848)
... .++.+.+
T Consensus 81 ~~~~~~~~v~T 91 (724)
T 1pjr_A 81 GGAAEDVWIST 91 (724)
T ss_dssp GGGGTTSEEEE
T ss_pred cccccCcEEee
Confidence 432 2344444
No 109
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.07 E-value=0.12 Score=55.42 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999985
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.98 E-value=0.02 Score=54.67 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=25.6
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCcc-ceeEEEeccC
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATM 575 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~-~Q~ll~SATl 575 (848)
+.++|||||++.+.... ...+..+++.+... ..++++|...
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46889999999866543 55566666654433 4424555553
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.86 E-value=0.12 Score=51.13 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
.|+-.++.|++|+|||... +-++..+... +.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~l-l~~~~~~~~~----------g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTEL-LSFVEIYKLG----------KKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHH-HHHHHHHHHC----------CCeEEEEeec
Confidence 3556789999999999963 3333333322 1268888887
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.75 E-value=0.063 Score=53.52 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
|+=.++.+++|||||.+ ++-++.++... +.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~----------g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIA----------KQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHT----------TCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEec
Confidence 45567899999999987 44444444322 2368899887
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.55 E-value=0.14 Score=52.39 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=50.3
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
|.-+++.|++|+|||++ ++-++..+...+ .+++++.|...- . .. ..+ ..-.| ..
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~g----------~kVli~~~~~d~------r----~~--~~i--~srlG-~~ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYAD----------VKYLVFKPKIDT------R----SI--RNI--QSRTG-TS 65 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEECCCG------G----GC--SSC--CCCCC-CS
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhcC----------CEEEEEEeccCc------h----HH--HHH--HHhcC-CC
Confidence 55678899999999997 344444443322 257888775321 0 00 000 00001 00
Q ss_pred hhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccc
Q 003100 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll 547 (848)
. ..+.+.+...++..+... ..-..+++|||||++.+.
T Consensus 66 ~-----------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 L-----------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp S-----------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGSC
T ss_pred c-----------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccCc
Confidence 0 133456667777776643 112357899999999753
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.32 Score=52.40 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=20.0
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
+.++++.||+|+|||++ +-.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 56899999999999996 3344555543
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.10 E-value=0.064 Score=68.51 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 003100 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (848)
Q Consensus 400 ~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~ 479 (848)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... ....-++|+|++|+..|..+.+++...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 35899999999863 8899999999999999843334444432210 0112269999999999999999988765
Q ss_pred h
Q 003100 480 K 480 (848)
Q Consensus 480 ~ 480 (848)
.
T Consensus 82 ~ 82 (1232)
T 3u4q_A 82 E 82 (1232)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.07 E-value=0.32 Score=48.04 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.+++.|++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999985
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.00 E-value=0.33 Score=54.56 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCccEEEEecccccc---cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh
Q 003100 533 MGLKMLVLDEADHLL---DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll---~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l 587 (848)
..+++||||++-++. +..+...+..+...+.+..-+++++|+........+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468999999998753 4446667777777777777778889987666555555543
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.52 E-value=0.65 Score=45.59 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=25.2
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+|||||+|.+... ....+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 34678999999998653 3445556666655555555544
No 119
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.30 E-value=0.093 Score=53.19 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
|+=.++++++|+|||++ ++-.+...... +.+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~----------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA----------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEecc
Confidence 44456899999999987 33333333322 23689999875
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.22 E-value=0.4 Score=54.06 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=25.9
Q ss_pred CccEEEEecccccccc-cchhhHHHHHHhc-CccceeEEEeccCCh
Q 003100 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCL-PRRRQSLLFSATMPK 577 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~-gf~~~l~~Il~~l-~~~~Q~ll~SATl~~ 577 (848)
..++|||||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 4678999999998763 2344455555443 334555554443333
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.18 E-value=0.36 Score=52.57 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35699999999999985
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.14 E-value=0.53 Score=51.01 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+..+++.||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 356899999999999985
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.02 E-value=0.49 Score=50.46 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=25.9
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...+|||||+|.+........+..++...+...++|+.|
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 578999999999862224455666666655566666644
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.71 E-value=0.14 Score=51.60 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.9
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+..+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999984
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.52 E-value=0.2 Score=54.20 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHh----CCC---CEEEEcCCCCcchHH
Q 003100 402 MTRVQEATLSACL----EGK---DAVVKAKTGTGKSIA 432 (848)
Q Consensus 402 ~t~iQ~~aI~~il----~g~---dvIv~a~TGSGKTla 432 (848)
++|+|.+++..+. +|+ .+++.||.|+|||..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
Confidence 4577777765443 343 388999999999985
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.52 E-value=0.39 Score=52.28 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.9
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999994
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.95 E-value=0.5 Score=50.51 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++.+++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999985
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.88 E-value=0.21 Score=52.25 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=31.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHH-HHHHHHH--HhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRV-QEATLSA--CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~i-Q~~aI~~--il~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-.+..++.|...-. .+. ..+.+.. +...+.+++.||+|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3568888777777777654310 000 1111211 13467899999999999984
No 129
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.79 E-value=0.14 Score=60.41 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 401 QMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 401 ~~t~iQ~~aI~~il~--g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+. . .++|++|+.+-+..+.+ +
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~-~------------~~~vtAP~~~a~~~l~~----~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA-G------------RAIVTAPAKASTDVLAQ----F 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS-S------------CEEEECSSCCSCHHHHH----H
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH-h------------CcEEECCCHHHHHHHHH----H
Confidence 578999999998886 34578999999999975333 222221 0 36899999887664433 2
Q ss_pred hhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecccccccccchhhHHHH
Q 003100 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (848)
Q Consensus 479 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~gf~~~l~~I 558 (848)
... .|-+..|..+.. .+...++||||||=.+- .+.+..+
T Consensus 237 ~~~---------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~l 275 (671)
T 2zpa_A 237 AGE---------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQL 275 (671)
T ss_dssp HGG---------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHH
T ss_pred hhC---------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHH
Confidence 210 133456655431 12357899999998863 3445555
Q ss_pred HHhcCccceeEEEeccCC
Q 003100 559 VDCLPRRRQSLLFSATMP 576 (848)
Q Consensus 559 l~~l~~~~Q~ll~SATl~ 576 (848)
+... ..++||.|+.
T Consensus 276 l~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 276 VSRF----PRTLLTTTVQ 289 (671)
T ss_dssp HTTS----SEEEEEEEBS
T ss_pred HhhC----CeEEEEecCC
Confidence 5532 2477777763
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.60 E-value=0.21 Score=52.93 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.++++.||+|+|||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999985
No 131
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.53 E-value=0.29 Score=50.07 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=25.4
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
|+=.+++|++|+|||.+ +|-.+.+.... +.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~----------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIA----------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTT----------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCeEEEEeecC
Confidence 56668899999999987 33333332211 23688888864
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.50 E-value=1.2 Score=50.04 Aligned_cols=54 Identities=11% Similarity=0.261 Sum_probs=34.8
Q ss_pred CccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh
Q 003100 534 GLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l 587 (848)
.+++||||.+=++.. ......+..+.....++.-++++.||........+..+.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 478999999976542 223444556666666666678888887666555554443
No 133
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.39 E-value=1.2 Score=46.31 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5799999999999985
No 134
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.27 E-value=0.29 Score=48.75 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PT 464 (848)
++=.++.+++|||||.- ++-++....... .+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~----------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ----------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC----------CeEEEEccc
Confidence 55678999999999964 444554443332 258888886
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.04 E-value=1.2 Score=47.82 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
.+.++|||||+|. ++......+..++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3678999999999 45445666777777766665555555443
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.00 E-value=1.8 Score=41.19 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999985
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.98 E-value=1 Score=48.19 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=30.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL-----EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il-----~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-...+++.|...=. .| ...+.+. ..+.+++.||+|+|||+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3568888777777777764310 00 0011111 135799999999999985
No 138
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.95 E-value=1.5 Score=41.68 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.|++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 56799999999999985
No 139
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.61 E-value=0.28 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTr 465 (848)
.|.-.++.+++|+|||.. ++-.+......+ .+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~~~g----------~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGIYAK----------QKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHHHcC----------CceEEEEecc
Confidence 355668999999999986 444444443322 2589998864
No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.31 E-value=0.47 Score=57.37 Aligned_cols=76 Identities=9% Similarity=0.196 Sum_probs=65.3
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-ccccccCCCCCeeEE
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMDYPDVTSVVQ 711 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l~rGlDip~V~~VI~ 711 (848)
+.+++|.+||..-+...++.+.+. ++.+..+||+++..++..++..+.+|...|+|+|.. +...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999888888877664 689999999999999999999999999999999964 345678889999884
Q ss_pred c
Q 003100 712 V 712 (848)
Q Consensus 712 y 712 (848)
-
T Consensus 497 D 497 (780)
T 1gm5_A 497 D 497 (780)
T ss_dssp E
T ss_pred c
Confidence 3
No 141
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.02 E-value=1.8 Score=46.31 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=27.1
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH----hCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC----LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~i----l~g~dvIv~a~TGSGKTla 432 (848)
..|+++--.+.+++.+.. ++... .....+++.||+|+|||..
T Consensus 26 ~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred CCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 457777556666655532 22222 1235899999999999984
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.02 E-value=0.48 Score=50.33 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=30.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQE-ATLSA--CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~-~aI~~--il~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-.+.+++.|...-. .+... +.+.. +..++.+++.||+|+|||+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 3568888767777766654200 00000 01111 23467899999999999984
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.98 E-value=0.73 Score=49.84 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.|++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999985
No 144
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.66 E-value=1.5 Score=47.00 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=30.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-----CCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE-----GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~-----g~dvIv~a~TGSGKTla 432 (848)
..+|++++-...+++.|...=. .|.+ .+.+.. .+.+++.||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568888777777777753200 0000 012222 36799999999999984
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.39 E-value=5.9 Score=38.93 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=22.0
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.-.+|||||+|.+... ....+..++...+....+|+.|
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 4578999999997533 2334444454444444444443
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.37 E-value=0.83 Score=45.50 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCccEEEEecccccccccc--hhhHHHHHHhcCccceeEEEeccCChHHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKEVRRIS 583 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf--~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~ 583 (848)
..+++|||||+-..+..++ .+.+..++...|...-+|+.+-..|.++..++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 5689999999977655542 34566677766666777777777777765544
No 147
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.26 E-value=1.9 Score=45.05 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=29.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH-hCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQE-ATLSAC-LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~-~aI~~i-l~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-...+++.|...=. .+... +.+..+ ..++.+++.||+|+|||+.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 3568888666777776654200 00000 000001 1357899999999999984
No 148
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.14 E-value=0.95 Score=50.21 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAG---YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g---~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..+|++++=-...++.|.+.= +..|--++.-. +.-.+.+++.||.|+|||+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 356999876666666665421 11111111111 11247899999999999984
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.96 E-value=1 Score=48.35 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=25.2
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...+|||||+|.+... ....+..++...+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 4579999999998653 3455666666655555555544
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.59 E-value=1.6 Score=45.97 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=25.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35679999999998643 2445556666555555555543
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.48 E-value=1.6 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.5
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.|++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467788999999999984
No 152
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.47 Score=53.25 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred ccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..+|++++--+..++.|... -+..|--++...+ .-.+.+++.||.|+|||+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 45799998888887777642 1112222222211 1246899999999999984
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.46 E-value=2.8 Score=46.05 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---------hCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC---------LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~i---------l~g~dvIv~a~TGSGKTla 432 (848)
..|+++.-...+++.|...- ..+.. ...+.+++.||+|+|||+.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 45888766666666665321 11111 1257899999999999984
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.39 E-value=5.2 Score=42.95 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
....+|||||+|.+... ....+..++...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45689999999998643 2344555555544444444443
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.75 E-value=0.95 Score=49.30 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.||+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45799999999999985
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.56 E-value=3.6 Score=43.43 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.|++|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999984
No 157
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.23 E-value=1.2 Score=50.14 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=32.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQ-EATLSAC--LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ-~~aI~~i--l~g~dvIv~a~TGSGKTla 432 (848)
..+|++++=-..+++.|.+.=. .|.. -+.+..+ .-.+.+++.||.|+|||+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 3579999877777777764311 0110 1111111 2357899999999999984
No 158
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.08 E-value=1.5 Score=44.13 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.|++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999985
No 159
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.89 E-value=0.92 Score=50.93 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=30.3
Q ss_pred ccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..+|++++=-...++.|... -+..|--++.-. +.-.+.+++.||.|+|||+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 35699987666666666532 011111111111 11247899999999999994
No 160
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=85.92 E-value=1.7 Score=47.85 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCceEEEEEecchHHHHHHHHHHH---hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCcc----ccccCCCCCe
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVSA----RGMDYPDVTS 708 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl~----rGlDip~V~~ 708 (848)
.+.++||.+|++.-+..++..+.. .++.+..+||+.+..++......+..|...|+|+|.-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567999999999999999999988 478999999999999989999999999999999996321 1256678888
Q ss_pred eEE
Q 003100 709 VVQ 711 (848)
Q Consensus 709 VI~ 711 (848)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.49 E-value=1.6 Score=46.01 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=24.6
Q ss_pred CccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999986532 344555566555555555554
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.01 E-value=3.2 Score=46.68 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=19.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-+++.|++|+|||.. ++-+...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 467788999999999985 444444443
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.00 E-value=3 Score=45.58 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCCEEE--EcCCCCcchHH
Q 003100 416 GKDAVV--KAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv--~a~TGSGKTla 432 (848)
+..++| .|+.|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346778 89999999985
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.98 E-value=1 Score=45.64 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccc-----ccchhhHHHHHHhcCccceeEEEeccCChH
Q 003100 533 MGLKMLVLDEADHLLD-----LGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~-----~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~ 578 (848)
.+.++||+||.-.+++ ......+..++..+...-.+++++.-....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4678999999998876 444555666776664444456665554443
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.31 E-value=1.5 Score=48.87 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred ccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..+|++++=-..+++.|.+. -+..+--++...+ --.+.+++.+|.|+|||+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 46799997656666666432 1112222222111 1246899999999999994
No 166
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=84.27 E-value=3.4 Score=39.21 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=51.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|+|+|. .+.. .+++.
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gld~~ 102 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR----GIDIE 102 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT----TCCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc----CCchh
Confidence 5899999999999988887664 6778899988654433 3345566789999993 2222 25566
Q ss_pred CccEEEEec
Q 003100 534 GLKMLVLDE 542 (848)
Q Consensus 534 ~l~~lVIDE 542 (848)
.+++||.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 788887643
No 167
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.71 E-value=2.4 Score=53.37 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred CCceEEEEEecchHHHHHHHHHHH---hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----ccccccCCCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLRE---MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARGMDYPDVT 707 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~rGlDip~V~ 707 (848)
.+.++||.+|++.-+..++..|.. .++.+..+||+++..+|...+..+..|...|||+|.- +.. +++.+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 467899999999999999999998 4678999999999999999999999999999999952 222 5677899
Q ss_pred eeEEc
Q 003100 708 SVVQV 712 (848)
Q Consensus 708 ~VI~y 712 (848)
+||.=
T Consensus 199 ~lViD 203 (1104)
T 4ddu_A 199 FVFVD 203 (1104)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88843
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.70 E-value=1.5 Score=49.04 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=30.1
Q ss_pred ccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~---g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..+|++++=-..+.+.|... -+..+--++... +.-.+.+++.||.|+|||+.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 35689987666666666432 011111111111 11246799999999999984
No 169
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.53 E-value=11 Score=39.70 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChH
Q 003100 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~ 578 (848)
..+++||||++-.+. +......+..+...+.+..-++.+.++...+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 467899999994432 3222334444444444443345566664433
No 170
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.49 E-value=2 Score=48.31 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=29.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEA-TL-SACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~-aI-~~il~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-...+.+.|...-. .|.+.. .+ ......+.+++.||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3568888766777776654210 000000 00 0012246799999999999984
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.45 E-value=4.5 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.7
Q ss_pred HHHhCCCCEEEEcCCCCcchHH
Q 003100 411 SACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 411 ~~il~g~dvIv~a~TGSGKTla 432 (848)
..+..+..+++.+|+|+|||+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3456788999999999999994
No 172
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.61 E-value=2.2 Score=48.62 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=27.0
Q ss_pred ccEEEEeccccccccc----------chhhHHHHHHhcCccceeEEEeccCCh
Q 003100 535 LKMLVLDEADHLLDLG----------FRKDVENIVDCLPRRRQSLLFSATMPK 577 (848)
Q Consensus 535 l~~lVIDEAH~ll~~g----------f~~~l~~Il~~l~~~~Q~ll~SATl~~ 577 (848)
..+|+|||+|.+.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886421 223344555555555667777777544
No 173
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=82.53 E-value=5 Score=39.70 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=54.2
Q ss_pred CceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----cccccCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~rGlDip~ 705 (848)
..++||.||++.-+..+++.+... ++.+..++|+.+...+. ..+..+...|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888776 67899999998765443 3445677899999952 1 23466778
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.17 E-value=1.8 Score=48.74 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4699999999999984
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.17 E-value=3.7 Score=44.04 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=26.3
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
...+++||||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999998653 3455666676666555555543
No 176
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.03 E-value=4.1 Score=46.31 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCC-
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG- 493 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg- 493 (848)
.+....+.+-||||||++ +.. +...... .+|||+|+...|.|+++.+..++.. .|..+..-
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~---l~~~~~~---------p~lvv~~~~~~A~~l~~~l~~~~~~----~v~~fp~~e 74 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAE---IAERHAG---------PVVLIAPDMQNALRLHDEISQFTDQ----MVMNLADWE 74 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHH---HHHHSSS---------CEEEEESSHHHHHHHHHHHHHTCSS----CEEECCCCC
T ss_pred CCCeEEEeCCCchHHHHH--HHH---HHHHhCC---------CEEEEeCCHHHHHHHHHHHHhhCCC----cEEEEeCcc
Confidence 456788999999999984 222 2222111 3799999999999999999887532 13332221
Q ss_pred ------cchh--------HhhhhhhcCCCcEEEeChHHHHHH
Q 003100 494 ------TRFK--------VDQRRLESDPCQILVATPGRLLDH 521 (848)
Q Consensus 494 ------~~~~--------~~~~~l~~~~~~IIV~TPgrLl~~ 521 (848)
.... .....+......|||+|...|+..
T Consensus 75 ~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp SCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred cccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhc
Confidence 0000 112233344567999998877643
No 177
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=81.62 E-value=5.4 Score=37.76 Aligned_cols=72 Identities=13% Similarity=0.245 Sum_probs=51.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|+|+|. .+.. .+++.
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----G~d~~ 97 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR----GIDVQ 97 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT----TCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc----CCCcc
Confidence 6999999999999888877664 6778889988664433 3345567789999993 2222 25566
Q ss_pred CccEEEEec
Q 003100 534 GLKMLVLDE 542 (848)
Q Consensus 534 ~l~~lVIDE 542 (848)
.+++||.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 788877633
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=81.55 E-value=5.9 Score=40.38 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC---
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV--- 696 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv--- 696 (848)
+.-++..........++||.+|++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|.-
T Consensus 98 ~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 98 ALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLI 173 (249)
T ss_dssp HHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHH
Confidence 3333333333334568999999999998888887765 67889999998765443332 356789999942
Q ss_pred --cc--ccccCCCCCeeEE
Q 003100 697 --SA--RGMDYPDVTSVVQ 711 (848)
Q Consensus 697 --l~--rGlDip~V~~VI~ 711 (848)
+. .++++..+++||.
T Consensus 174 ~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHHHSTTCCCTTCCEEEE
T ss_pred HHHHcCCCcCccccCEEEE
Confidence 11 3567777887773
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.55 E-value=11 Score=39.07 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.3
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|.-+++.|++|+|||+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHH
Confidence 45678889999999999985
No 180
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=81.39 E-value=7.9 Score=37.89 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=51.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..++..+... ++.+..+.|+...... ...+..+...|+|+| +.+... +++.
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi~ 121 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDFP 121 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCcc
Confidence 5999999999999988887765 6778889998664433 334455678999999 333333 5567
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 7888776
No 181
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.98 E-value=7.5 Score=42.18 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999985
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=80.82 E-value=31 Score=36.19 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..++|.|+.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5788999999999984
No 183
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=80.72 E-value=3 Score=52.72 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=64.3
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-CccccccCCCCCeeE
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-VSARGMDYPDVTSVV 710 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-vl~rGlDip~V~~VI 710 (848)
.+.+++|.|||..-+...++.+.+. ++.+..+++..+..++..++..+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4569999999999898888887753 57889999999999999999999999999999995 455568888888887
Q ss_pred E
Q 003100 711 Q 711 (848)
Q Consensus 711 ~ 711 (848)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 184
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=80.33 E-value=9.4 Score=36.42 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=50.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++..|..++..+... ++.+..++|+...... ...+..+...|+|+|. .+.. .+++.
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----Gid~~ 101 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR----GIDVK 101 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT----TTCCT
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc----CCCcc
Confidence 7999999999999888777653 6778899998765433 3345566789999993 1222 35567
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 7888885
No 185
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.95 E-value=3.6 Score=46.10 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=19.1
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-++|.|++|+|||.. ++-+...+.
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 456678999999999974 444444443
No 186
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=79.07 E-value=7 Score=38.86 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+.-+..++..+... ++.+..++|+....... ..+..+..+|+|||. .+.. .+++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~----Gidi~ 98 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR----GLDIP 98 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC----SSSCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc----CCCCc
Confidence 6999999999999988887765 67788999987654333 344567789999992 2222 25567
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 7887774
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.97 E-value=4.5 Score=43.11 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=30.4
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l 478 (848)
..|.-++|.|++|+|||.. ++-+...+.... ..+++++-- .-..|+..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl-~l~ia~~~a~~g----------~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDND----------DVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHH-HHHHHHHHHTTT----------CEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHcC----------CeEEEEECC-CCHHHHHHHHHHH
Confidence 3567789999999999974 443433333211 257777633 2334444444433
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=78.86 E-value=7.8 Score=41.11 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
...+++||||||.|.... ...+.+.+..-++...+|+ .++-
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl-~t~~ 121 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVL-NTRR 121 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEE-EESC
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEE-EECC
Confidence 467899999999987543 3445555655444444444 4443
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.65 E-value=4.8 Score=39.58 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.4
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.+++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 466788999999999985
No 190
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.03 E-value=4.9 Score=40.55 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC---
Q 003100 623 ILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD--- 695 (848)
Q Consensus 623 ~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd--- 695 (848)
++..++..........++||.+|++.-+..+++.+... ++.+..++|+..... ....+..+...|+|+|.
T Consensus 84 ~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l 160 (237)
T 3bor_A 84 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRV 160 (237)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHH
Confidence 34444443322234568999999999999999988775 456777788765332 33445567789999993
Q ss_pred --Cccc-cccCCCCCeeEE
Q 003100 696 --VSAR-GMDYPDVTSVVQ 711 (848)
Q Consensus 696 --vl~r-GlDip~V~~VI~ 711 (848)
.+.+ .+++..+++||.
T Consensus 161 ~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 161 FDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp HHHHHTTSSCSTTCCEEEE
T ss_pred HHHHHhCCcCcccCcEEEE
Confidence 2222 356667777763
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.80 E-value=4.6 Score=45.81 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=27.8
Q ss_pred cCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHH--hCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAG--YIQMTRVQEATLSAC--LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g--~~~~t~iQ~~aI~~i--l~g~dvIv~a~TGSGKTla 432 (848)
.+|+++.-....++.+...- +..+. .+..+ .-.+.+++.+|+|+|||+.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 46888766666655554320 11111 11111 1135699999999999984
No 192
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.17 E-value=8.5 Score=37.39 Aligned_cols=71 Identities=7% Similarity=-0.019 Sum_probs=49.7
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cc-ccccCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYP 704 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~-rGlDip 704 (848)
...++||.+|++.-+..+++.+... +..+..++|+.+....... + .+...|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 4558999999999999988888765 5678889998775443222 1 356789999952 12 234566
Q ss_pred CCCeeE
Q 003100 705 DVTSVV 710 (848)
Q Consensus 705 ~V~~VI 710 (848)
++++||
T Consensus 146 ~~~~lV 151 (206)
T 1vec_A 146 HVQMIV 151 (206)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 777766
No 193
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.14 E-value=20 Score=38.39 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=36.2
Q ss_pred CccEEEEecccccc-cccchhhHHHHHHhcCccceeEEEeccCChHHHHHHHHHh
Q 003100 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQLVL 587 (848)
Q Consensus 534 ~l~~lVIDEAH~ll-~~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~~~l 587 (848)
..+++++|.+.+.. +......+..+...+.++..++++.++....+...++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35678899887653 2234555666666666777788888888777666665543
No 194
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.07 E-value=1.6 Score=40.73 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=17.2
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
...+.++++.+++|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34577999999999999984
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=75.92 E-value=1.5 Score=40.88 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=17.6
Q ss_pred HHhCCCCEEEEcCCCCcchHH
Q 003100 412 ACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTla 432 (848)
.+..+.++++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999984
No 196
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=75.14 E-value=16 Score=34.85 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=50.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+++.-+..++..+... ++.+..++|+...... ...+..+...|+|||.- +.. .+++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~----Gldi~ 98 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR----GMDIE 98 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST----TCCGG
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc----Ccchh
Confidence 6999999999999988877664 6778889988664433 33455677899999932 111 24566
Q ss_pred CccEEEEe
Q 003100 534 GLKMLVLD 541 (848)
Q Consensus 534 ~l~~lVID 541 (848)
.+++||.=
T Consensus 99 ~~~~Vi~~ 106 (172)
T 1t5i_A 99 RVNIAFNY 106 (172)
T ss_dssp GCSEEEES
T ss_pred hCCEEEEE
Confidence 77887763
No 197
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.80 E-value=35 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++-+++.+++|+|||+.
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34567999999999984
No 198
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.74 E-value=5.5 Score=39.83 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.6
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.+++|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 467788999999999985
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.71 E-value=13 Score=39.15 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.++.+++.+++|+|||+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999985
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.68 E-value=3.9 Score=44.23 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~ 476 (848)
.|.-+++.|++|+|||.. ++-+...+... +..++|++.- .-..|+..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~~----------g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALND----------DRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc----------CCeEEEEeCC-CCHHHHHHHHH
Confidence 466788999999999984 44444444332 1257777542 22344444443
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.44 E-value=5.4 Score=52.77 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCcchHHH
Q 003100 416 GKDAVVKAKTGTGKSIAF 433 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaf 433 (848)
++.+++++|+|+|||...
T Consensus 1427 g~~vll~GppGtGKT~LA 1444 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLT 1444 (2050)
T ss_dssp TSEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 789999999999999963
No 202
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=74.42 E-value=13 Score=37.39 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Ccc-ccccCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA-RGMDYPD 705 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~-rGlDip~ 705 (848)
.+.++||.+|++.-+..+++.+... ++.+..++|+.+...+...+. . ...|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 3567999999999988888777664 778999999988766554443 2 478999995 222 2357778
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888773
No 203
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=74.36 E-value=8.9 Score=37.20 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhH---hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~---~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..++..+... ++.+..+.|+..... ....+..+...|+|+|. .+... +++.
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 113 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDIS 113 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CCC
T ss_pred eEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCcc
Confidence 6999999999999888877663 677888888765432 23445566789999992 22222 4566
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 7777776
No 204
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.21 E-value=3.7 Score=49.35 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.7
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 499999999999985
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.93 E-value=9.9 Score=43.20 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=19.0
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
|.-+.+.|++|+|||+ ++-.|..++..
T Consensus 293 GeVI~LVGpNGSGKTT--Ll~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTT--TIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHH--HHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHH--HHHHHHHHhhh
Confidence 3456799999999999 44555555543
No 206
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=73.10 E-value=11 Score=40.64 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=55.2
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----cccccCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYP 704 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~rGlDip 704 (848)
...++||.||++.-+..+++.+... ++.+..++|+.+...... .+..+...|+|+|.- + ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999999999998888776 688999999987655443 345677899999952 1 2345678
Q ss_pred CCCeeEE
Q 003100 705 DVTSVVQ 711 (848)
Q Consensus 705 ~V~~VI~ 711 (848)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888873
No 207
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.88 E-value=8.4 Score=38.50 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc-
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS- 697 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl- 697 (848)
+..++..........++||.||++.-+..+++.+... ++.+..++|+.+...+...+ ....|+|+|.-.
T Consensus 79 ~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l 153 (230)
T 2oxc_A 79 STIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRI 153 (230)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHH
Confidence 3344443333334569999999999999999988875 56788999998765554432 357899999521
Q ss_pred -----cccccCCCCCeeE
Q 003100 698 -----ARGMDYPDVTSVV 710 (848)
Q Consensus 698 -----~rGlDip~V~~VI 710 (848)
...+++..+++||
T Consensus 154 ~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 154 KQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp HHHHHTTSSCGGGCCEEE
T ss_pred HHHHhcCCcccccCCEEE
Confidence 1345666777766
No 208
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=72.44 E-value=20 Score=40.96 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=55.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+.-|..++..+.+.+.. ++.+..++|+...... ...+..+..+|+|||. .+.. -+++.
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----GiDip 409 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR----GMDFP 409 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS----SCCCT
T ss_pred cEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc----CCCcc
Confidence 7999999999999999998887542 6778888988765433 3445567789999994 2322 25667
Q ss_pred CccEEEEec
Q 003100 534 GLKMLVLDE 542 (848)
Q Consensus 534 ~l~~lVIDE 542 (848)
.+++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 788887554
No 209
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.96 E-value=4.1 Score=40.75 Aligned_cols=41 Identities=17% Similarity=-0.015 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHHHHHHHH
Q 003100 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (848)
Q Consensus 399 ~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTlaflLPil~~l 441 (848)
+..-+.-|..++..+..|.-+.+.+|.|||||+. +-++.-+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 3444556778888888898999999999999994 4444444
No 210
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=70.94 E-value=11 Score=40.73 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-+++.++.|+|||.. ++.++..+.
T Consensus 60 ~G~iv~I~G~pGsGKTtL-al~la~~~~ 86 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV-ALHAVANAQ 86 (349)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 467788999999999985 444444443
No 211
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=70.18 E-value=24 Score=40.68 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.++||.|+|+.-|..++..+.+.+. .++.+..++|+...... ...+..+..+|+|||. .+.. -+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~----GiDi 357 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR----GMDF 357 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS----SCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc----CCCc
Confidence 3799999999999999999888764 26778889988665433 3445567789999994 2222 2566
Q ss_pred CCccEEEEeccc
Q 003100 533 MGLKMLVLDEAD 544 (848)
Q Consensus 533 ~~l~~lVIDEAH 544 (848)
..+++||.-..-
T Consensus 358 p~v~~VI~~~~p 369 (579)
T 3sqw_A 358 PNVHEVLQIGVP 369 (579)
T ss_dssp TTCCEEEEESCC
T ss_pred ccCCEEEEcCCC
Confidence 778888865543
No 212
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=69.68 E-value=6.8 Score=44.85 Aligned_cols=74 Identities=7% Similarity=-0.077 Sum_probs=61.2
Q ss_pred CceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----cccccCCCCCeeE
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYPDVTSVV 710 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~rGlDip~V~~VI 710 (848)
.+.+||.+|++.-+......|...++.+..+|+..+..++..+...+..|..+||++|.- + ...+...++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 468999999999999999999999999999999999999999999999999999999952 1 1223445566665
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.20 E-value=51 Score=36.59 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQ 584 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~ 584 (848)
..+++||||=+-++.. ......+..+...+.+..-++.+.|+...+....++
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~ 231 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHH
Confidence 3578899997655432 112233444444444554566677765544444443
No 214
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=69.13 E-value=7.1 Score=45.49 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=53.9
Q ss_pred CceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHH--hcCCceEEEecC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEF--RASKRLILVTSD 695 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F--~~G~~~VLVaTd 695 (848)
.+.+||.+|++.-+...+..|...++.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999998888888 478899999997
No 215
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.94 E-value=4.1 Score=45.33 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~ 469 (848)
...+++|.|+||||||.. +-+++..++..+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g----------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLRG----------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHTT----------CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHCC----------CcEEEEeCCCchhH
Confidence 457999999999999997 444555554432 26888899888854
No 216
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=68.57 E-value=15 Score=39.87 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCccccc
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.++||.++++.-+..+++.+.+. ++.+..++|+...... ...+..+..+|+|||. .+... +++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi 342 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDI 342 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CCc
Confidence 37999999999999988887664 6778889988765433 3344556789999994 44444 566
Q ss_pred CCccEEEE
Q 003100 533 MGLKMLVL 540 (848)
Q Consensus 533 ~~l~~lVI 540 (848)
..+++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 77888775
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.24 E-value=7.6 Score=41.40 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.|++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 356788999999999985
No 218
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.20 E-value=20 Score=34.58 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=51.6
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh--ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cc-ccccCCCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM--KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPDVT 707 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~-rGlDip~V~ 707 (848)
...++||.||++.-+..+++.+... .+.+..++|+.+.......+. ....|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999999876 467888999877554433332 25789999951 12 245677778
Q ss_pred eeEE
Q 003100 708 SVVQ 711 (848)
Q Consensus 708 ~VI~ 711 (848)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 219
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=67.29 E-value=8.1 Score=38.19 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=49.0
Q ss_pred HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc--
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-- 697 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl-- 697 (848)
+..++..........++||.+|++.-+..+++.+... ++.+..++|+.+.......+ ....|+|+|.-.
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVF 143 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHHHHH
Confidence 4444443323334568999999999999988888765 56788899987654433222 237899999521
Q ss_pred ----cccccCCCCCeeE
Q 003100 698 ----ARGMDYPDVTSVV 710 (848)
Q Consensus 698 ----~rGlDip~V~~VI 710 (848)
...+++..+++||
T Consensus 144 ~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp HHHHTTSSCCTTCCEEE
T ss_pred HHHHhCCcchhhCcEEE
Confidence 2345666777776
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=67.09 E-value=4.7 Score=48.69 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=32.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCC---CCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 377 SQKRFDECGISPLTIKALTAAGY---IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 377 ~~~~f~~l~l~~~l~~~L~~~g~---~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
+...|++++.-..+.+.|...=. ..+..++.-. +...+.+++.+|.|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34578888888888888875311 1111111000 11235799999999999984
No 221
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.36 E-value=6 Score=43.05 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.6
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..+.-+++.||||||||+.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455788999999999994
No 222
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.11 E-value=7 Score=43.87 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=19.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-++|.|++|+|||.. ++-+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHH
Confidence 466788999999999985 444444443
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.77 E-value=14 Score=45.10 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
..+++++|++|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 45799999999999984
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.59 E-value=3.4 Score=42.89 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=20.4
Q ss_pred HhCCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+..|.-+++.+|||||||+. +-++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 45677889999999999994 44444444
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.26 E-value=13 Score=48.39 Aligned_cols=120 Identities=17% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 495 (848)
|+-+.+.+|.|||||+. +++++....+.+ -.|+++.+--+|.... +.++ |+ +
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~~g----------~~~~~i~~e~~~~~~~---~~~~-----Gv---------~ 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQREG----------KTCAFIDAEHALDPIY---ARKL-----GV---------D 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHHTT----------CCEEEECTTSCCCHHH---HHHT-----TC---------C
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHhcC----------CeEEEEecCCCCCHHH---HHHc-----CC---------C
Confidence 46688999999999997 666665555442 2578888765554433 2333 21 1
Q ss_pred hhHhhhhhhcCCCcEEEeChHHH---HHHHHhccCcccccCCccEEEEeccccccccc-----------------chhhH
Q 003100 496 FKVDQRRLESDPCQILVATPGRL---LDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-----------------FRKDV 555 (848)
Q Consensus 496 ~~~~~~~l~~~~~~IIV~TPgrL---l~~L~~~~~~~~~l~~l~~lVIDEAH~ll~~g-----------------f~~~l 555 (848)
. -+++|.-|..- +..+... +.-..+++||||.+-.+.... +...+
T Consensus 1483 ~-----------~~l~~~~p~~~e~~l~~~~~~----~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~l 1547 (1706)
T 3cmw_A 1483 I-----------DNLLCSQPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 1547 (1706)
T ss_dssp G-----------GGCEEECCSSHHHHHHHHHHH----HHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHH
T ss_pred H-----------HHeEEeCCCcHHHHHHHHHHH----HHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHH
Confidence 1 13556666433 2222221 223468899999998875321 22234
Q ss_pred HHHHHhcCccceeEEEeccCChH
Q 003100 556 ENIVDCLPRRRQSLLFSATMPKE 578 (848)
Q Consensus 556 ~~Il~~l~~~~Q~ll~SATl~~~ 578 (848)
.++...+.+..-+++|...+...
T Consensus 1548 r~l~~~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1548 RKLAGNLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHHHHHHTCEEEEEECBC--
T ss_pred HHHHHHHHhCCcEEEEeeccccc
Confidence 55555666666677777776544
No 226
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=64.76 E-value=13 Score=39.41 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=49.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+.-+..++..+... ++.+..++|+....... ..+..+..+|+|||. .+.. .+++.
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~----Gidi~ 95 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR----GLDIP 95 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC----STTCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc----Ccccc
Confidence 5899999999988877766543 67889999986654333 344566789999993 2222 35667
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 7888874
No 227
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.52 E-value=24 Score=38.35 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
.|.-++|.+++|+|||.. ++.++..+..
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~~ 100 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQK 100 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHHH
Confidence 466788999999999984 5555555443
No 228
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=64.45 E-value=9.4 Score=37.91 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=48.4
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh---ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC------ccccccCCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV------SARGMDYPDV 706 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv------l~rGlDip~V 706 (848)
.+.++||.+|++.-+..+++.+... ++.+..++|+.+...+...+ . ....|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999998875 67788888887655443332 2 34789999952 1234567778
Q ss_pred CeeEE
Q 003100 707 TSVVQ 711 (848)
Q Consensus 707 ~~VI~ 711 (848)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87773
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.33 E-value=7.6 Score=47.04 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.++.+++++|+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 367899999999999984
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=63.89 E-value=15 Score=44.82 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=13.7
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.||||+|||..
T Consensus 590 ~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 590 SFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEBSCSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999985
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.22 E-value=12 Score=40.65 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=19.6
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-++|.+|+|+|||.. ++.++..+.
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~ 86 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQ 86 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 356788999999999984 555554443
No 232
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=62.96 E-value=15 Score=38.78 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=51.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..+++.+.+. ++.+..++|+...... ...+..+..+|+|+|. .+... +++.
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~~ 305 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----IDVN 305 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CCcc
Confidence 6899999999999988887764 6678888888665433 2344566789999993 33333 5566
Q ss_pred CccEEEEe
Q 003100 534 GLKMLVLD 541 (848)
Q Consensus 534 ~l~~lVID 541 (848)
.+++||.-
T Consensus 306 ~~~~Vi~~ 313 (367)
T 1hv8_A 306 DLNCVINY 313 (367)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 78888763
No 233
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.59 E-value=18 Score=36.97 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Ccc--ccccCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSA--RGMDYP 704 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~--rGlDip 704 (848)
.+.++||.+|++.-+..++..++.. +..+..++|+....... ..+..+ ..|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888775 45677888887654433 333344 78999994 111 246777
Q ss_pred CCCeeEE
Q 003100 705 DVTSVVQ 711 (848)
Q Consensus 705 ~V~~VI~ 711 (848)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887773
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.14 E-value=6.6 Score=43.69 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHh--CCCCEEEEcCCCCcchHH
Q 003100 405 VQEATLSACL--EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 405 iQ~~aI~~il--~g~dvIv~a~TGSGKTla 432 (848)
-+..++..++ .+.-++|.+|||||||+.
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444554443 345678999999999994
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.05 E-value=15 Score=39.46 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
|.-+++.|++|+|||..
T Consensus 122 G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SEEEEEECCTTCTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55678999999999985
No 236
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.76 E-value=14 Score=36.91 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=48.8
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhc----cceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c----cc--cccCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMK----MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S----AR--GMDYP 704 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~----~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l----~r--GlDip 704 (848)
.+.++||.+|++.-+..+++.+...+ +.+..++|+.+.......+ +...|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999998888764 6788999987755443332 46789999952 1 12 35566
Q ss_pred CCCeeE
Q 003100 705 DVTSVV 710 (848)
Q Consensus 705 ~V~~VI 710 (848)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 777766
No 237
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.68 E-value=10 Score=39.93 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh-----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM-----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV 696 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv 696 (848)
.++..++..........++||.+||+.-+..++..+... ++.+..++|+....... .....|||+|.-
T Consensus 147 a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~ 219 (300)
T 3fmo_B 147 AFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPG 219 (300)
T ss_dssp HHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHH
T ss_pred HHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHH
Confidence 334444444333333447999999999999998888775 35667777765533221 345689999952
Q ss_pred c------c-ccccCCCCCeeEE
Q 003100 697 S------A-RGMDYPDVTSVVQ 711 (848)
Q Consensus 697 l------~-rGlDip~V~~VI~ 711 (848)
. . ..+++..+.+||.
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEE
T ss_pred HHHHHHHhcCCCChhhceEEEE
Confidence 1 1 3567788888874
No 238
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.38 E-value=32 Score=34.54 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=50.6
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----cccccCCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----ARGMDYPDV 706 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~rGlDip~V 706 (848)
..++||.||++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988888765 46678888887655443322 346789999952 1 123567788
Q ss_pred CeeEE
Q 003100 707 TSVVQ 711 (848)
Q Consensus 707 ~~VI~ 711 (848)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.15 E-value=13 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.5
Q ss_pred HhCCCCEEEEcCCCCcchHHHHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIAFLL 435 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTlaflL 435 (848)
+-.+..+++++++|+|||...+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~ 1100 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQ 1100 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHH
Confidence 33578999999999999996433
No 240
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=61.03 E-value=4.4 Score=46.41 Aligned_cols=39 Identities=26% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCcHHHHHHHH-HHhCCCCEEEEcCCCCcchHH
Q 003100 392 KALTAAGYIQMTRVQEATLS-ACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 392 ~~L~~~g~~~~t~iQ~~aI~-~il~g~dvIv~a~TGSGKTla 432 (848)
..|.+.|. +++.+...+. .+..|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 3344444443 345688899999999999993
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.22 E-value=8.3 Score=40.90 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
|.-+++.|++|+|||..
T Consensus 98 g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56788999999999985
No 242
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=60.15 E-value=26 Score=41.27 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=55.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+.-|..+++.+... ++.+..++|+....... ..+..+..+|+|||. .+.. .+.+.
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~----GlDip 512 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE----GLDIP 512 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST----TCCCT
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC----CcccC
Confidence 7999999999998888777664 67788888876543332 234556789999983 2222 25667
Q ss_pred CccEEEEeccccc
Q 003100 534 GLKMLVLDEADHL 546 (848)
Q Consensus 534 ~l~~lVIDEAH~l 546 (848)
.+++||+=+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 8999999998864
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=59.99 E-value=11 Score=41.55 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
|.-++|.++.|+|||..
T Consensus 178 Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 178 GSITELFGEFRTGKSQL 194 (400)
T ss_dssp TSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCCCChHHH
Confidence 56788999999999985
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=59.98 E-value=18 Score=39.09 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
|.-+.+.++.|||||..
T Consensus 131 G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55678999999999985
No 245
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=59.92 E-value=35 Score=37.14 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeC--------Ccch
Q 003100 425 TGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG--------GTRF 496 (848)
Q Consensus 425 TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~g--------g~~~ 496 (848)
..++|... ++-++........ +.++||.++++.-+..+++.+... ++.+..+.| +...
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~~--------~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~ 405 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRKQ--------NSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQ 405 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHCT--------TCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------C
T ss_pred CCChHHHH-HHHHHHHHhccCC--------CCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCH
Confidence 44556553 4445554443221 226999999999998888877765 677888888 4433
Q ss_pred hH---hhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCccEEEEecc
Q 003100 497 KV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (848)
Q Consensus 497 ~~---~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEA 543 (848)
.. ....+..+.+.|+|+|. .+.. .+++..+++||+=+.
T Consensus 406 ~~r~~~~~~F~~~~~~vLv~T~-----~~~~----Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 406 REQKLILDEFARGEFNVLVATS-----VGEE----GLDVPEVDLVVFYEP 446 (494)
T ss_dssp CHHHHHHHHHHHTSCSEEEECG-----GGGG----GGGSTTCCEEEESSC
T ss_pred HHHHHHHHHHhcCCceEEEECC-----cccc----CCCchhCCEEEEeCC
Confidence 32 23345556789999993 2222 366777888885443
No 246
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=59.90 E-value=4.8 Score=43.83 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=17.7
Q ss_pred HHhCCCCEEEEcCCCCcchH
Q 003100 412 ACLEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTl 431 (848)
.+..|..++++|+||||||+
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 34578999999999999999
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.85 E-value=5.8 Score=38.98 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.0
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|+-++++||+|+|||. ++-++..++
T Consensus 3 ~g~~i~lvGpsGaGKST--Ll~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST--LLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHhhC
Confidence 46788999999999999 344444443
No 248
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=59.38 E-value=16 Score=44.20 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.+++.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999984
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=59.29 E-value=71 Score=35.44 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.+++++++|+|||+.
T Consensus 101 ~vI~ivG~~GvGKTT~ 116 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTS 116 (433)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3566789999999986
No 250
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.09 E-value=17 Score=40.88 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=50.9
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c----ccc-c-cCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S----ARG-M-DYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l----~rG-l-Dip~ 705 (848)
..++||.||++.-+...+..+... ++.+..+||+.+...+...+. +...|+|+|.- + ..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888888777765 889999999997665533332 23679999942 2 122 3 5667
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 251
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.90 E-value=17 Score=39.14 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=51.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+++.-|..++..+.+. ++.+..++|+...... ...+..+..+|+|||. .+.. .+++.
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidip 333 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR----GIDVE 333 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS----SCCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc----CCCcc
Confidence 7999999999999988887765 5678888888665433 3345566789999993 2332 35677
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 334 ~~~~Vi~ 340 (412)
T 3fht_A 334 QVSVVIN 340 (412)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 8888874
No 252
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.64 E-value=5.9 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.0
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
+.|+-++++||+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999993
No 253
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=58.60 E-value=13 Score=46.91 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCC-CCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATS-SSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~-~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~ 480 (848)
..+|.|.-|||||.+-.--++..+...+. .........-.+|+|+=|+..|.++.+++.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999755445555543210 0000112233699999999999999999887764
No 254
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=57.03 E-value=16 Score=43.35 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=41.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
.++||.||+++-+..+++.+.+. ++.+..++|. ........+..+..+|+|||.
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG
T ss_pred CCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc
Confidence 36999999999999888777654 6778888885 334455667777899999993
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.66 E-value=16 Score=37.05 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=28.7
Q ss_pred ccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAG--YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g--~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
...|+++.-.+.+.+.+...- +..+..++.-. +...+.+++.||+|+|||+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 356888877777766664320 00000000000 11245699999999999984
No 256
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.65 E-value=21 Score=36.89 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
....+++.||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 367899999999999984
No 257
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=56.40 E-value=86 Score=35.55 Aligned_cols=52 Identities=4% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCccEEEEeccccccc-ccchhhHHHHHHhcCccceeEEEeccCChHHHHHHH
Q 003100 533 MGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEVRRISQ 584 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~-~gf~~~l~~Il~~l~~~~Q~ll~SATl~~~v~~l~~ 584 (848)
..++++|||=+=++.. ..+...+..+...+.++.-++++.|+........+.
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~ 234 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAK 234 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHH
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHH
Confidence 3568899998766532 123333444444344455567778876544333333
No 258
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=56.36 E-value=29 Score=40.87 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=54.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---hhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.|+|+.-|..++..+.+. ++.+..++|+....... ..+..+.++|+|||. .+.. -+++.
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~----GlDip 506 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE----GLDIP 506 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT----TCCCT
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc----CccCC
Confidence 7999999999999888777664 67788888876543332 335567789999982 2222 25567
Q ss_pred CccEEEEeccccc
Q 003100 534 GLKMLVLDEADHL 546 (848)
Q Consensus 534 ~l~~lVIDEAH~l 546 (848)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 8899998888764
No 259
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=56.34 E-value=20 Score=38.28 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=54.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-|..+++.+... ++.+..++|+...... ...+..+..+|+|+|. .+.. .+++.
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidip 310 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR----GIDIP 310 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS----SCCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc----CCCcc
Confidence 7999999999999888887764 5678888888665433 3345566789999993 2222 35677
Q ss_pred CccEEEEecccc
Q 003100 534 GLKMLVLDEADH 545 (848)
Q Consensus 534 ~l~~lVIDEAH~ 545 (848)
.+++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 888888755443
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=56.26 E-value=13 Score=40.18 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
....+++.||+|+|||+.
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999995
No 261
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=56.17 E-value=19 Score=39.88 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=50.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccCC
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~ 534 (848)
+||.|+|+.-|..+++.+.+. ++.+..++|+...... ...+..+...|+|||. .+.. .+++.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r----GlDi~~ 368 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR----GLDIKN 368 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS----SCCCTT
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC----CCCccc
Confidence 899999999999888877664 6778889988664433 3445567789999994 2322 256778
Q ss_pred ccEEEE
Q 003100 535 LKMLVL 540 (848)
Q Consensus 535 l~~lVI 540 (848)
+++||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.95 E-value=5.6 Score=43.50 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=20.2
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
..|..+++++|||||||+. +-++..++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl--l~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT--IASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHhhcC
Confidence 4577789999999999994 444444443
No 263
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.52 E-value=31 Score=37.05 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=51.4
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cc-ccccCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SA-RGMDYPD 705 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~-rGlDip~ 705 (848)
...++||.||++.-+..+++.+... ++.+..++|+......... ..+...|+|+|.- +. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4558999999999998888888765 5778888888765433221 2467789999942 22 3356778
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888874
No 264
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.15 E-value=13 Score=36.54 Aligned_cols=83 Identities=8% Similarity=0.106 Sum_probs=52.1
Q ss_pred HHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh--------ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 624 LHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM--------KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 624 L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~--------~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
+..++..........++||.+|++.-+..+++.+... ++.+..++|+.+....... + .....|+|+|.
T Consensus 59 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 59 LLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTP 134 (219)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECH
T ss_pred HHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCH
Confidence 4444443322234568999999999999988887765 4677888888754332111 1 23568999994
Q ss_pred -----Cccc-cccCCCCCeeE
Q 003100 696 -----VSAR-GMDYPDVTSVV 710 (848)
Q Consensus 696 -----vl~r-GlDip~V~~VI 710 (848)
.+.. .+++..+++||
T Consensus 135 ~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 135 GRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp HHHHHHHHTTCCCGGGCCEEE
T ss_pred HHHHHHHHcCCCCcCcceEEE
Confidence 2222 34566677766
No 265
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=54.71 E-value=8.6 Score=39.30 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.4
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999984
No 266
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=54.42 E-value=12 Score=41.66 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=44.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeChHHHHHHHHhccCcccccCCcc
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~~l~ 536 (848)
++||.||+++-|..+++.+... ++.+..++|.. .......+..+..+|+|||. .+... +++. ++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~ 242 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VE 242 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESS-----STTCC----TTCC-CS
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhhee----eccC-ce
Confidence 6999999999999988887765 56788888843 33455666677899999993 22222 4556 77
Q ss_pred EEE
Q 003100 537 MLV 539 (848)
Q Consensus 537 ~lV 539 (848)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=54.13 E-value=7.6 Score=37.72 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999994
No 268
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=54.07 E-value=12 Score=37.47 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.|++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 356789999999999974
No 269
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.81 E-value=26 Score=42.17 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhh------cCCCceEEEEeCCcchhHhhhhhh--------cCCCcEEEeChHHHHHHH
Q 003100 457 YVLILCPTRELASQIAAEAIALLK------NHDGIGVLTLVGGTRFKVDQRRLE--------SDPCQILVATPGRLLDHI 522 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~------~~~~i~v~~l~gg~~~~~~~~~l~--------~~~~~IIV~TPgrLl~~L 522 (848)
.+||.+|++.-+..++..+.+.+. ...++.+..++|+.....+...+. .+...|||||. .+
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----ia 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IA 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HH
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HH
Confidence 799999999999999988876432 225788999999987655444332 34578999993 33
Q ss_pred HhccCcccccCCccEEEE
Q 003100 523 ENKSGLSVRLMGLKMLVL 540 (848)
Q Consensus 523 ~~~~~~~~~l~~l~~lVI 540 (848)
... +++..+.+||-
T Consensus 380 e~G----idIp~v~~VId 393 (773)
T 2xau_A 380 ETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHT----CCCTTEEEEEE
T ss_pred HhC----cCcCCeEEEEe
Confidence 333 55667776663
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.77 E-value=5.7 Score=42.67 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCchHHHHHHHHhhcccCcccccCCCCCCCc
Q 003100 46 MHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVK 124 (848)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (848)
|-|+|.+++.+.-+..|+.|..+-..+--+ ..+..|..-+..++..|+.-...+++.
T Consensus 1 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~----------------------~~~~~l~~~l~d~~v~dI~in~~~~v~ 57 (330)
T 2pt7_A 1 MTEDRLSAEDKKFLEVERALKEAALNPLRH----------------------ATEELFGDFLKMENITEICYNGNKVVW 57 (330)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHTSSSEEEEEECSSSEEE
T ss_pred CchhhhhhcchhHHHHHHHHHHHHHHHHHH----------------------hCccchHHHhcCCCCeEEEEcCCCEEE
Confidence 667888888888888888777666544211 123444445556788887766666553
No 271
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=52.40 E-value=24 Score=39.87 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=48.0
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cccc-c-cCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG-M-DYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~rG-l-Dip~ 705 (848)
..++||.||++.-+...+..+... ++.+..+||+.+...+...+. ....|+|+|.- +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888877765 789999999987655433222 13679999952 1222 3 6778
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 272
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=52.28 E-value=38 Score=36.49 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=51.5
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC-----Cccc-cccCCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-----VSAR-GMDYPD 705 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-----vl~r-GlDip~ 705 (848)
...++||.+|++.-+..+++.+... ++.+..++|+.........+. ....|+|+|. .+.+ .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 5679999999999999999888765 467788888877655433322 2458999994 2223 466777
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888773
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=51.93 E-value=13 Score=42.26 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 404 RVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 404 ~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..-..++..+..+.++++.||+|+|||..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 33344555667789999999999999984
No 274
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=51.70 E-value=28 Score=41.89 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c----ccc-c-cCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S----ARG-M-DYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l----~rG-l-Dip~ 705 (848)
..++||.||+..-+...+..+... ++.+..+||+.+...+...+. +...|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 679999999999888888877765 889999999987655433221 35789999942 1 122 3 5667
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788873
No 275
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=51.59 E-value=18 Score=40.08 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=41.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
++||+||++.-|..+++.+.+. ++.+..++|+. .......+..+..+|+|||.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 5899999999999988887765 56788888874 33455666677899999993
No 276
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=51.28 E-value=9.4 Score=41.72 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=28.1
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
..+.+++|.|+||+|||...-. ++..+... +.+++|+=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~----------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKM-LLLREYMQ----------GSRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHH-HHHHHHTT----------TCCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHHHH-HHHHHHHC----------CCEEEEEeCCcCH
Confidence 3577999999999999985333 33333221 2357788887654
No 277
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.12 E-value=10 Score=37.87 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.1
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|+-+.+.||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688899999999999993
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.11 E-value=16 Score=36.51 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC----CCEEEEcCCCCcchHH
Q 003100 388 PLTIKALTAAGYIQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 388 ~~l~~~L~~~g~~~~t~iQ~~aI~~il~g----~dvIv~a~TGSGKTla 432 (848)
..+.+.|+-.|+. +..+ ..++..++.+ +.+++.+|.|+|||..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 3556666655544 3333 3344444443 3588999999999985
No 279
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.92 E-value=1.6e+02 Score=30.75 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.+++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44566889999999985
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.89 E-value=9.9 Score=37.09 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=16.0
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.++.+++.|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467899999999999995
No 281
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.84 E-value=24 Score=36.59 Aligned_cols=42 Identities=21% Similarity=0.104 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCCCcHHHHH-HHHHHhCCC-----CEEEEcCCCCcchHHH
Q 003100 389 LTIKALTAAGYIQMTRVQEA-TLSACLEGK-----DAVVKAKTGTGKSIAF 433 (848)
Q Consensus 389 ~l~~~L~~~g~~~~t~iQ~~-aI~~il~g~-----dvIv~a~TGSGKTlaf 433 (848)
.+.+.|+..||. +++-. ++...+.++ .+++.||.|+|||+.+
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 678888888877 44432 345555543 4889999999999953
No 282
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.79 E-value=20 Score=31.32 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=34.5
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcch
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
..+.+++|||.+-..+...+..|...|+.+..+.|++..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 356799999999999999999999999999999999754
No 283
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=50.56 E-value=14 Score=37.03 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----ccc---cccC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SAR---GMDY 703 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~r---GlDi 703 (848)
.+.++||.+|++.-+..+++.+... ++.+..++|+.....+ ......+...|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3458999999999999999988876 5667777766433221 11122456789999942 112 4677
Q ss_pred CCCCeeEE
Q 003100 704 PDVTSVVQ 711 (848)
Q Consensus 704 p~V~~VI~ 711 (848)
.++.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 78888773
No 284
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.25 E-value=19 Score=38.46 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45799999999999995
No 285
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=50.19 E-value=23 Score=39.46 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=41.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
++||.+||+.-|.+++..+.+. ++.+..+.+... ......+..+..+|+|||.
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC
Confidence 5899999999999888777653 667788877655 3455666777899999993
No 286
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=50.01 E-value=26 Score=45.79 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCcchHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlafl 434 (848)
.|..+++++++|+|||...+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAl 52 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTL 52 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36789999999999998533
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=49.93 E-value=9.4 Score=37.84 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.5
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4678889999999999993
No 288
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.55 E-value=7.4 Score=39.53 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=29.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvIv~a~TGSGKTla 432 (848)
..+|+++.-.+.+...+...-.. . -...++..+- -.+.+++.+|+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 35688887666666666543110 0 0112222211 134489999999999984
No 289
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.29 E-value=6.9 Score=41.52 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHhCCCCEEEEcCCCCcchHH
Q 003100 411 SACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 411 ~~il~g~dvIv~a~TGSGKTla 432 (848)
..+..+.++++.||+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445578999999999999984
No 290
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.26 E-value=39 Score=35.99 Aligned_cols=85 Identities=7% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
.++..++..........++||.||++.-+..+++.+... ++.+..++|+.+.......+. ...|+|+|.-.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~ 148 (394)
T 1fuu_A 74 TFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGR 148 (394)
T ss_dssp HHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHH
Confidence 334444443322334569999999999999888887764 578889999987655544433 46799999421
Q ss_pred ------cccccCCCCCeeEE
Q 003100 698 ------ARGMDYPDVTSVVQ 711 (848)
Q Consensus 698 ------~rGlDip~V~~VI~ 711 (848)
...+.+..+++||.
T Consensus 149 l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 149 VFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HHHHHHTTSSCCTTCCEEEE
T ss_pred HHHHHHhCCcchhhCcEEEE
Confidence 12455667788773
No 291
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.49 E-value=11 Score=37.11 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHhCCCCEEEEcCCCCcchHH
Q 003100 412 ACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 412 ~il~g~dvIv~a~TGSGKTla 432 (848)
.+..|.-+.+.+|+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788889999999999993
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.39 E-value=11 Score=36.21 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999993
No 293
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.39 E-value=49 Score=35.51 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC--
Q 003100 622 QILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD-- 695 (848)
Q Consensus 622 ~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd-- 695 (848)
.++..++..........++||.+|++.-+..+++.+... +..+..++|+... ......+..+...|+|+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~iiv~T~~~ 169 (414)
T 3eiq_A 93 TFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV---RAEVQKLQMEAPHIIVGTPGR 169 (414)
T ss_dssp HHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTH---HHHHHHHTTTCCSEEEECHHH
T ss_pred HHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcch---HHHHHHHhcCCCCEEEECHHH
Confidence 334444443322235668999999999999999888775 4566677776543 3334556668889999994
Q ss_pred ---Ccc-ccccCCCCCeeEE
Q 003100 696 ---VSA-RGMDYPDVTSVVQ 711 (848)
Q Consensus 696 ---vl~-rGlDip~V~~VI~ 711 (848)
.+. ..+++..+++||.
T Consensus 170 l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 170 VFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHHHHTSSCSTTCCEEEE
T ss_pred HHHHHHcCCcccccCcEEEE
Confidence 222 3356677787773
No 294
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.92 E-value=11 Score=37.12 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=18.6
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
|.-+.|.+++|||||+ ++-+|..++.
T Consensus 22 g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 5567799999999998 4445555544
No 295
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=47.89 E-value=21 Score=40.48 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=18.6
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEA 440 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~ 440 (848)
..|.-++|.|++|+|||.. ++-++.+
T Consensus 240 ~~G~l~li~G~pG~GKT~l-al~~a~~ 265 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTF-VRQQALQ 265 (503)
T ss_dssp CTTCEEEEEESSCHHHHHH-HHHHHHH
T ss_pred CCCeEEEEeecCCCCchHH-HHHHHHH
Confidence 3466788999999999984 4434333
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=47.81 E-value=10 Score=36.17 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.5
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..++.+++.|++|||||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 4567899999999999995
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=47.32 E-value=9.4 Score=40.32 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.3
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
.....+++.|++|+|||+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3467899999999999984
No 298
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=52.89 E-value=4 Score=38.96 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=46.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|+|+|. .+... +++.
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 6899999999998888777654 5667778887554322 2334455678999992 22222 4455
Q ss_pred CccEEEE
Q 003100 534 GLKMLVL 540 (848)
Q Consensus 534 ~l~~lVI 540 (848)
.+++||.
T Consensus 98 ~~~~Vi~ 104 (170)
T 2yjt_D 98 DVSHVFN 104 (170)
Confidence 6666665
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=46.92 E-value=5.5 Score=41.47 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=26.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hCCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQ-EATLSAC--LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ-~~aI~~i--l~g~dvIv~a~TGSGKTla 432 (848)
..+|++++--+.+.+.|...= ..|+. ..++..+ .-.+.+++.||.|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 456888877777777765421 11211 1222221 1134499999999999983
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.91 E-value=21 Score=45.69 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=29.7
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
+++-+++|+|||=.-+|..-...+.+.+..+.+++-+|+.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34567899999998888766667777777766666555544
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=46.88 E-value=9.5 Score=37.04 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.2
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..|.-+++.|++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577788999999999984
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=46.84 E-value=11 Score=37.29 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788999999999994
No 303
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=46.74 E-value=12 Score=32.14 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=33.7
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccceeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
++.+++|||.+-..+...+..|...|+.+..+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 46799999999999999999999999999999998753
No 304
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.73 E-value=12 Score=32.25 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=33.6
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccceeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
++.+++|||.+-..+...+..|...|+.+..+.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 46789999999989999999999999999999998753
No 305
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=46.67 E-value=12 Score=32.76 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=32.9
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccceeeecCCcc
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKP 672 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls 672 (848)
++.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 5678999999999999999999999999888888864
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=46.65 E-value=12 Score=36.59 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCcchH
Q 003100 417 KDAVVKAKTGTGKSI 431 (848)
Q Consensus 417 ~dvIv~a~TGSGKTl 431 (848)
+-+|++||+|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458999999999998
No 307
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.58 E-value=19 Score=41.12 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+.+++|.+.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 367999999999999996
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=46.44 E-value=8.4 Score=37.77 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=17.1
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..++-++++|++|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44678899999999999984
No 309
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=46.28 E-value=7.8 Score=41.45 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+-++|.||||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3467899999999985
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.13 E-value=8.5 Score=36.47 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-++++|++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999994
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=45.92 E-value=8.9 Score=36.65 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.++++|++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999995
No 312
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=45.72 E-value=12 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.|+.|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999994
No 313
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.59 E-value=46 Score=37.82 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.7
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|.-+++.+++|+|||..
T Consensus 278 i~~G~i~~i~G~~GsGKSTL 297 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLL 297 (525)
T ss_dssp EESSCEEEEEECTTSSHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHH
Confidence 34577888999999999984
No 314
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=45.51 E-value=30 Score=38.30 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=31.2
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcC---------ccceeEEEeccCCh--HHHHHHHHHh
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP---------RRRQSLLFSATMPK--EVRRISQLVL 587 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~---------~~~Q~ll~SATl~~--~v~~l~~~~l 587 (848)
.+.+++++||--.-+|......+..++..+. ....++++|+-... .++.++..+.
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 4556677788665555444444444443331 23467888885433 3777666654
No 315
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=45.08 E-value=10 Score=40.80 Aligned_cols=17 Identities=47% Similarity=0.415 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++-++|.||||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34688999999999985
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.05 E-value=13 Score=37.31 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.1
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|.-+++.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44678889999999999993
No 317
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=44.85 E-value=13 Score=40.34 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.++..++.|.++ +..+.||||||..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 356777888764 5779999999986
No 318
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=44.83 E-value=14 Score=34.59 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=16.7
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
-.+|.+|+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 467999999999994 44554444
No 319
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=44.77 E-value=9.1 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999994
No 320
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=44.74 E-value=16 Score=46.18 Aligned_cols=49 Identities=4% Similarity=-0.004 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhh--CCCCceEEEEEecch-HHHHHHHHHHHhccceeeecC
Q 003100 621 FQILHHLLKEHIL--GTPDYKVIVFCSTGM-VTSLLYLLLREMKMNVREMYS 669 (848)
Q Consensus 621 ~~~L~~lL~~~~~--~~~~~kiLVF~~s~~-~a~~l~~~L~~~~~~v~~lhg 669 (848)
...+...|...+. ......+.|.|.+.. .+..+...|.+.++++....+
T Consensus 324 a~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 324 LEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred HHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 3444444544443 123345888888874 677888888888888766444
No 321
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=44.70 E-value=9.2 Score=40.78 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++|+||||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 467899999999984
No 322
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=44.56 E-value=19 Score=30.53 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=32.3
Q ss_pred ceEEEEEecchHHHHHHHHHHHhccceeeecCCcch
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
.+++|||.+-..+...+..|...|+.+..+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 789999999988999999999999998888898764
No 323
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.56 E-value=6.9 Score=37.61 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.5
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..|.-+++.|+.|||||+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577788999999999993
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.97 E-value=11 Score=35.87 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=16.5
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
-.+|.+++|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 567999999999993 44444443
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.66 E-value=9.3 Score=39.14 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++++|+||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367999999999984
No 326
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=43.40 E-value=15 Score=39.25 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHhCCCC--EEEEcCCCCcchHH
Q 003100 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~d--vIv~a~TGSGKTla 432 (848)
..+..++.|.+ ++..|+||||||..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 34566778876 46779999999986
No 327
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.08 E-value=9.7 Score=37.95 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++-+++.++||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999874
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.98 E-value=16 Score=35.66 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.6
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.|+.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467788999999999994
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.86 E-value=21 Score=37.66 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
+.-+.+.+|+|+|||+ ++-.+..++..
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHHh
Confidence 4567789999999999 45556556553
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=42.73 E-value=18 Score=35.40 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=26.6
Q ss_pred cCCccEEEEeccccc--ccccchhhHHHHHHhcCccceeEEEeccC
Q 003100 532 LMGLKMLVLDEADHL--LDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 532 l~~l~~lVIDEAH~l--l~~gf~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
..+.+++||||+..+ .+..|...+..++.. ...+|+-|+|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999998877 344466666666653 22345446665
No 331
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.72 E-value=10 Score=39.22 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=30.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCCEEEEcCCCCcchHH
Q 003100 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 378 ~~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il--~g~dvIv~a~TGSGKTla 432 (848)
..+|+++.-.+.+.+.+...-.. . -...++..+- -.+.+++.+|+|+|||+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 45688887777776666543110 0 0012222211 123489999999999984
No 332
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=42.65 E-value=13 Score=39.38 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=20.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-+.|.+|+|||||. ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 57788899999999999 455555555
No 333
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.35 E-value=10 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46789999999999984
No 334
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.02 E-value=24 Score=40.72 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
..+++|.+.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 57899999999999996 333444443
No 335
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=41.99 E-value=17 Score=34.57 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.|+.|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55688999999999994
No 336
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=41.49 E-value=41 Score=32.42 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=35.6
Q ss_pred CCceEEEEEecchHHHH-HHHHHHHh---ccceeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 636 PDYKVIVFCSTGMVTSL-LYLLLREM---KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~-l~~~L~~~---~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
...++||+|++..-+.. +.+.+... ++.+..++|+.....+...+. ....|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 46799999999888777 55555544 578888898875544332221 1467888884
No 337
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=41.46 E-value=16 Score=40.54 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred HHHHHHhCCCC--EEEEcCCCCcchHH
Q 003100 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~d--vIv~a~TGSGKTla 432 (848)
..+..++.|.+ ++..|.||||||..
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeE
Confidence 34566778776 45779999999986
No 338
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=41.27 E-value=17 Score=39.30 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=18.6
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 45566778764 5779999999986
No 339
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.17 E-value=17 Score=39.54 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 45567788764 5779999999986
No 340
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.15 E-value=18 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.0
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIAF 433 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTlaf 433 (848)
.+..++.|.++ +..|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56777888875 57799999999873
No 341
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=41.15 E-value=18 Score=38.91 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..++.|.++ +..++||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 356677788764 5779999999986
No 342
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=41.14 E-value=16 Score=39.49 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIAF 433 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTlaf 433 (848)
..+..++.|.++ +..+.||||||...
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 367778888875 56799999999873
No 343
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=40.94 E-value=18 Score=39.31 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=18.7
Q ss_pred HHHHHhCCCC--EEEEcCCCCcchHH
Q 003100 409 TLSACLEGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~d--vIv~a~TGSGKTla 432 (848)
.+..++.|.+ ++..|.||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 4556778876 45779999999986
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.93 E-value=21 Score=37.69 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=20.3
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
.|.-+.+.+++|+|||+ ++-.+..++..
T Consensus 99 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTT--SLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHH--HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHHHHHHH
Confidence 45567799999999999 45555555543
No 345
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=40.69 E-value=15 Score=39.65 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=18.5
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|+||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 45566777764 5779999999986
No 346
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=40.61 E-value=17 Score=39.70 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..++.|.++ +..|+||||||..
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 345667788764 5779999999986
No 347
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=40.55 E-value=27 Score=37.60 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=28.6
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HHH-HHhCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEA-TLS-ACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~-aI~-~il~g~dvIv~a~TGSGKTla 432 (848)
..|+++.-...+++.|...=. .+.... .+. .....+.+++.||+|+|||+.
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 457777666666666654200 000000 000 112356899999999999984
No 348
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=40.54 E-value=18 Score=39.25 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=19.0
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
++..++.|.++ +..|+||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 55667788764 5779999999986
No 349
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=40.49 E-value=18 Score=39.04 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=18.8
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..++||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 45667788764 5779999999986
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=40.43 E-value=8.9 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+.++|+.|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 466678999999999994
No 351
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=40.40 E-value=25 Score=34.47 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
.++.++.. ..+..+.-+++.|+.|||||..
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555555 3345677788999999999984
No 352
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=40.39 E-value=18 Score=39.41 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..++.|.++ +..|.||||||..
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 345667788764 5779999999986
No 353
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=40.31 E-value=17 Score=39.27 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|+||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 45667788764 5779999999986
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=40.27 E-value=12 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+..++++|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466799999999999994
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=40.24 E-value=16 Score=34.47 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..++++|+.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 55688999999999994
No 356
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=40.04 E-value=21 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=32.8
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~ 673 (848)
.+.+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4568999999988899999999999995 8889998754
No 357
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.00 E-value=21 Score=39.81 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=27.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----CCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il----~g~dvIv~a~TGSGKTla 432 (848)
..|+++.-...+++.+.. .+..+. .++.+++.+|+|+|||+.
T Consensus 34 ~~~~~iiG~~~~~~~l~~------------~~~~~~~~~~~~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 34 QAASGLVGQENAREACGV------------IVELIKSKKMAGRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp SEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEECCTTSSHHHH
T ss_pred hchhhccCHHHHHHHHHH------------HHHHHHhCCCCCCeEEEECCCcCCHHHH
Confidence 456777556666555532 112222 346899999999999985
No 358
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=39.94 E-value=41 Score=39.73 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=52.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchh---Hhhhhhhc--CCCcEEEeChHHHHHHHHhccCccccc
Q 003100 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLES--DPCQILVATPGRLLDHIENKSGLSVRL 532 (848)
Q Consensus 458 vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~---~~~~~l~~--~~~~IIV~TPgrLl~~L~~~~~~~~~l 532 (848)
.+|+++|+.-+..++..+.+. ++.+..++|+.... .....+.. +..+|+|||. .+.. .+++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~----GlDi 388 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM----GLNL 388 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS----SCCC
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC----CcCc
Confidence 366789988888887777663 67789999998765 34455555 6689999994 2332 3566
Q ss_pred CCccEEEEeccccc
Q 003100 533 MGLKMLVLDEADHL 546 (848)
Q Consensus 533 ~~l~~lVIDEAH~l 546 (848)
++++||+-...+.
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 7999998877654
No 359
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=39.85 E-value=17 Score=34.98 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=18.9
Q ss_pred CCccEEEEecccc--cccccchhhHHHHHHh
Q 003100 533 MGLKMLVLDEADH--LLDLGFRKDVENIVDC 561 (848)
Q Consensus 533 ~~l~~lVIDEAH~--ll~~gf~~~l~~Il~~ 561 (848)
.+.+++|+||++- .++..+...+..++..
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 4568999999653 3455466666666554
No 360
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.84 E-value=18 Score=39.29 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.++..++.|.++ +..|.||||||..
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 356667788775 5779999999986
No 361
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=39.78 E-value=18 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.++..++.|.++ +..++||||||..
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 356677788775 5679999999986
No 362
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=39.76 E-value=34 Score=36.65 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=26.8
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHH
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreL 467 (848)
-+++.++.|+|||.. ++.++..+.+.. .+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~g--------~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQY--------PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHHC--------TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhcC--------CCceEEEEeccchh
Confidence 578999999999985 555555544431 11268888765444
No 363
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=39.51 E-value=26 Score=47.87 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhCCCCEEEEcCCCCcchHHHH
Q 003100 386 ISPLTIKALTAAGYIQMTRVQ-EATL---SACLEGKDAVVKAKTGTGKSIAFL 434 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ-~~aI---~~il~g~dvIv~a~TGSGKTlafl 434 (848)
+...+.+.+.+.|+. +++.+ .+++ ..+...+.|++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566777778876 45544 3333 444457789999999999999754
No 364
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=39.40 E-value=26 Score=31.37 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=32.5
Q ss_pred ceEEEEE-ecchHHHHHHHHHHHhccceeeecCCcchh
Q 003100 638 YKVIVFC-STGMVTSLLYLLLREMKMNVREMYSRKPQL 674 (848)
Q Consensus 638 ~kiLVF~-~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~ 674 (848)
.++|||| .+-..+..++..|...|+.+..+.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 7999999 587888899999999999999999998654
No 365
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.26 E-value=21 Score=36.55 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.4
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
.+.|..+++.+++|||||.+
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34589999999999999995
No 366
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=39.20 E-value=43 Score=39.48 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=39.5
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
.++||.++|+.-+..+++.+.+. ++.+..++|+..... ...++.+|+|||.
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e----r~~~~~~VLVATd 447 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV----IPTIGDVVVVATD 447 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG----SCSSSCEEEEECT
T ss_pred CcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH----HHhCCCcEEEECC
Confidence 47999999999999888877653 678889999876432 3345569999994
No 367
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=39.19 E-value=17 Score=39.40 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=19.6
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIAF 433 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTlaf 433 (848)
.+..++.|.++ +..+.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 56677788764 57799999999863
No 368
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=38.97 E-value=17 Score=39.49 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..++.|.++ +..|.||||||..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 355667788764 5779999999986
No 369
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=38.65 E-value=30 Score=31.15 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.3
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~ 673 (848)
.+.++||||.+-..+...+..|...|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 5679999999999999999999999995 8889999754
No 370
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.54 E-value=14 Score=37.49 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999998
No 371
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.50 E-value=17 Score=35.31 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 402 ~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
.+..+...+. ...|.-+++.|+.|||||..
T Consensus 12 ~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRLL-DQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHHH-TSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHhc-CCCCeEEEEECCCCCCHHHH
Confidence 3444443331 23466788999999999984
No 372
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=38.35 E-value=19 Score=39.60 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.3
Q ss_pred HHHHHhCCCC--EEEEcCCCCcchHHH
Q 003100 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (848)
Q Consensus 409 aI~~il~g~d--vIv~a~TGSGKTlaf 433 (848)
.+..++.|.+ ++..|.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 5566778876 457799999999863
No 373
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.09 E-value=39 Score=46.85 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhCCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 386 ISPLTIKALTAAGYIQMTRVQ-EATL---SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 386 l~~~l~~~L~~~g~~~~t~iQ-~~aI---~~il~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+...+.+.+.++|+. +.+.+ .+++ ..+...+.+++.||||||||.++- +|...+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al 930 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAI 930 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHH
Confidence 345566777788886 44444 3443 444557779999999999999654 344443
No 374
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.96 E-value=31 Score=43.00 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCceEEEEEecchHHHHHHHHHHHh----cc----ceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-cccccc-CCC
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREM----KM----NVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SARGMD-YPD 705 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~----~~----~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l~rGlD-ip~ 705 (848)
.+.++||.+||+.-+..+++.+... ++ .+..+||+.+...+......+.. ..|+|+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999988888765 45 78999999998888777777766 899999952 111111 557
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 375
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.89 E-value=17 Score=35.51 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
+.-+.+.|++|||||+. +-++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHHh
Confidence 44567999999999994 44444443
No 376
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=37.81 E-value=20 Score=33.38 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=13.1
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.|+.|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999994
No 377
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.80 E-value=21 Score=39.58 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..++.|.++ +..|.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 366777888775 5779999999986
No 378
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=37.55 E-value=16 Score=39.10 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=13.4
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.++++||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 379
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.49 E-value=14 Score=34.81 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=13.1
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++++|+.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 368999999999994
No 380
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=37.36 E-value=27 Score=30.25 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcchh
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQL 674 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~~ 674 (848)
..+.+++|||.+-..+...+..|...|+. +..+.|++..-
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 35678999999988999999999999995 88899987543
No 381
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=37.28 E-value=18 Score=39.48 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=18.8
Q ss_pred HHHHHHhCCCC--EEEEcCCCCcchHH
Q 003100 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~d--vIv~a~TGSGKTla 432 (848)
..+..++.|.+ ++..+.||||||..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 34556677776 45779999999986
No 382
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=37.11 E-value=12 Score=37.49 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=12.0
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..|.-+.+.||+|||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577788999999999984
No 383
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=36.74 E-value=22 Score=39.79 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.2
Q ss_pred HHHHHHhCCCC--EEEEcCCCCcchHH
Q 003100 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~d--vIv~a~TGSGKTla 432 (848)
.++..++.|.+ ++..|.||||||..
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 35566778876 45779999999986
No 384
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=36.59 E-value=40 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCceEEEEEecchH--HHHHHHHHHHhccceeeecCCcch
Q 003100 636 PDYKVIVFCSTGMV--TSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~--a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
++.+++|||.+-.. +...+..|...|+.+..+.|++..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 46789999999776 788999999999998899998754
No 385
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=36.58 E-value=18 Score=39.51 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=19.1
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 56677788764 5679999999986
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=36.54 E-value=21 Score=37.99 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999994
No 387
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=36.48 E-value=18 Score=39.18 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=0.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.++.|+||+|||. ++=++..++
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=36.17 E-value=15 Score=39.62 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.2
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++|+||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 477999999999985
No 389
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=36.06 E-value=19 Score=39.84 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=12.9
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-++|.||||+|||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 367899999999985
No 390
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=35.91 E-value=19 Score=39.58 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=18.2
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..|.||||||..
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeE
Confidence 34556778764 5779999999986
No 391
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=35.72 E-value=40 Score=41.43 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=46.5
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c----ccc-c-cCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S----ARG-M-DYPD 705 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l----~rG-l-Dip~ 705 (848)
+.++||.+|+..-+...+..|... ++.+..+||+.+...+...+. ....|+|+|.- + .++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999998888888777765 789999999986554332221 13679999942 1 122 2 4566
Q ss_pred CCeeEE
Q 003100 706 VTSVVQ 711 (848)
Q Consensus 706 V~~VI~ 711 (848)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.69 E-value=12 Score=35.69 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|..+++.|+.|||||+.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688999999999994
No 393
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.58 E-value=38 Score=37.77 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=40.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
++||.+|++.-|..+++.+... ++.+..+.+... ......+..+..+|+|||.
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECC
Confidence 5899999999999988887765 667888887533 3345556667789999993
No 394
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=35.54 E-value=22 Score=34.94 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=17.7
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
-.+|.+++|+|||.. +-++..++-.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 457899999999994 4455545443
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=35.51 E-value=28 Score=37.80 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHHh
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~~ 444 (848)
|.-+.+.+++|+|||+ ++-.+..++..
T Consensus 157 g~vi~lvG~nGsGKTT--ll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTT--SLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHH--HHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHH--HHHHHHhhccc
Confidence 4567799999999999 45555555543
No 396
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=35.48 E-value=20 Score=37.46 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999984
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.30 E-value=29 Score=36.75 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.9
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367999999999993
No 398
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=35.19 E-value=35 Score=40.57 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 408 ATLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 408 ~aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
..+..+++|.++ +..+.||||||..
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 367788888874 5669999999986
No 399
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.15 E-value=49 Score=34.08 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=25.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCCEEEEcCCCCcchHH
Q 003100 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 379 ~~f~~l~l~~~l~~~L~~~g~~~~t~iQ~~aI~~il~g~dvIv~a~TGSGKTla 432 (848)
..|+++--.+.+++.|...= .. -....+++.||+|+|||..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHH
Confidence 45676655666666655320 00 0123599999999999985
No 400
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.04 E-value=91 Score=27.36 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred EEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceE
Q 003100 640 VIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLI 690 (848)
Q Consensus 640 iLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~V 690 (848)
.+||.+.......+...++..|..+..++++.....|...++.|......|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467777777778888888888999999999999999999999998655443
No 401
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=34.98 E-value=20 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.9
Q ss_pred CCCC--EEEEcCCCCcchHH
Q 003100 415 EGKD--AVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~d--vIv~a~TGSGKTla 432 (848)
.|.+ ++..|.||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4766 57889999999986
No 402
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=34.93 E-value=23 Score=38.75 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=19.3
Q ss_pred HHHHHhCCCCE--EEEcCCCCcchHH
Q 003100 409 TLSACLEGKDA--VVKAKTGTGKSIA 432 (848)
Q Consensus 409 aI~~il~g~dv--Iv~a~TGSGKTla 432 (848)
.+..++.|.++ +..+.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 56777888764 5779999999986
No 403
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=34.60 E-value=61 Score=37.88 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=50.0
Q ss_pred ceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-----cccc-c-cCCCC
Q 003100 638 YKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-----SARG-M-DYPDV 706 (848)
Q Consensus 638 ~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-----l~rG-l-Dip~V 706 (848)
+++||.+|++.-+...+..+... ++.+..++|+.+...+...+. ...+|+|+|.- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888887766 789999999986544333222 24789999952 2223 3 56677
Q ss_pred CeeEE
Q 003100 707 TSVVQ 711 (848)
Q Consensus 707 ~~VI~ 711 (848)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 404
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=34.56 E-value=17 Score=34.43 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=19.4
Q ss_pred hCCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
..|.-+.+.+|.|+|||. ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 346667799999999999 444554444
No 405
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=34.48 E-value=28 Score=44.55 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=27.6
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCccceeEEE
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~ 571 (848)
+++-+++|+||+=.-+|..-...+.+.+..+.+++-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567899999999988876666666666655455444443
No 406
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=34.32 E-value=18 Score=36.73 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=19.2
Q ss_pred CCccEEEEecccccccccchhhHHHHH
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIV 559 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il 559 (848)
.+-+++++||.-.-+|......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 345788999988888876566665555
No 407
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=34.11 E-value=20 Score=37.91 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999984
No 408
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=34.08 E-value=32 Score=31.43 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhcc-ceeeecCCcch
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKM-NVREMYSRKPQ 673 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~-~v~~lhg~ls~ 673 (848)
..+.++||||.+-..+...+..|...|+ .+..+.|++..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 3567999999998889999999999999 58899999754
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=34.08 E-value=22 Score=38.51 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=13.5
Q ss_pred CEEEEcCCCCcchHHH
Q 003100 418 DAVVKAKTGTGKSIAF 433 (848)
Q Consensus 418 dvIv~a~TGSGKTlaf 433 (848)
-++|+||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999853
No 410
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=34.02 E-value=25 Score=31.95 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~ 673 (848)
.+.++||||.+-..+..++..|...|+. +..+.|++..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4678999999988889999999999995 9999999754
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=33.57 E-value=15 Score=35.34 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=16.8
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 418 dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
-+.+.+++|||||+. +-++..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 466889999999984 444444544
No 412
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.46 E-value=25 Score=34.01 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
.-++++|+.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999994
No 413
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=33.22 E-value=31 Score=31.94 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhcc-ceeeecCCcc
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKM-NVREMYSRKP 672 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~-~v~~lhg~ls 672 (848)
.+.++||||.+-..+...+..|...|+ .+..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999998888899999999999 5889999974
No 414
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.05 E-value=16 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.|++|||||+.
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578999999999995
No 415
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.94 E-value=56 Score=37.05 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=24.8
Q ss_pred CccEEEEeccccccccc--chhhHHHHHHhcCccceeEEEeccC
Q 003100 534 GLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATM 575 (848)
Q Consensus 534 ~l~~lVIDEAH~ll~~g--f~~~l~~Il~~l~~~~Q~ll~SATl 575 (848)
...+|||||+|.+.... +...+..++.. ....+|+.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 45789999999987532 22444444443 234577777664
No 416
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=32.94 E-value=18 Score=34.62 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.+++|||||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999994
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.90 E-value=24 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.||+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999985
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=32.81 E-value=21 Score=35.69 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.0
Q ss_pred hCCCCEEEEcCCCCcchH
Q 003100 414 LEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTl 431 (848)
..|.-+.+.+|.|||||+
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788999999999999
No 419
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=32.74 E-value=1e+02 Score=34.36 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=48.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHh---hhhhhcCCCcEEEeChHHHHHHHHhccCcccccC
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~~~~IIV~TPgrLl~~L~~~~~~~~~l~ 533 (848)
..+|++.+..-+..+++.+.+. +..+..+.|+...... ...+..+..+|+|||+..+-. . +++.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~----G----iDip 415 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST----G----ISVK 415 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH----S----CCCC
T ss_pred CeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc----c----cccc
Confidence 3445555555555555544432 3478888888764432 334556778999999766543 2 5677
Q ss_pred CccEEEEecccc
Q 003100 534 GLKMLVLDEADH 545 (848)
Q Consensus 534 ~l~~lVIDEAH~ 545 (848)
.+++||+..+..
T Consensus 416 ~v~~vi~~~~~~ 427 (510)
T 2oca_A 416 NLHHVVLAHGVK 427 (510)
T ss_dssp SEEEEEESSCCC
T ss_pred cCcEEEEeCCCC
Confidence 899999987773
No 420
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=32.72 E-value=75 Score=38.34 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=49.5
Q ss_pred CceEEEEEecchHHHHHHHHHHH----hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----c-------c
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLRE----MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----A-------R 699 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~-------r 699 (848)
+..++|.++|..-|.+.++.+.. +|+.+.++.|+++...|.... ..+|+++|+- + . .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcchh
Confidence 56899999999888877766544 488999999999876655432 3689999961 1 1 1
Q ss_pred cccCCCCCeeE
Q 003100 700 GMDYPDVTSVV 710 (848)
Q Consensus 700 GlDip~V~~VI 710 (848)
.++...+.++|
T Consensus 198 ~l~lr~~~~lV 208 (844)
T 1tf5_A 198 QMVQRPLHFAV 208 (844)
T ss_dssp GCCCCCCCEEE
T ss_pred hhcccCCCEEE
Confidence 35667777766
No 421
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=32.71 E-value=65 Score=38.89 Aligned_cols=68 Identities=9% Similarity=-0.070 Sum_probs=48.8
Q ss_pred CceEEEEEecchHHHHHHHHHHH----hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc------ccc------
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLRE----MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS------ARG------ 700 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl------~rG------ 700 (848)
+.+++|.++|..-|...+..+.. +++.+..+.|+++...|.... ...|+|+|+-- ..+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~~ 188 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSPE 188 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccHh
Confidence 56899999999888777766554 488999999999876554332 37899999621 122
Q ss_pred -ccCCCCCeeE
Q 003100 701 -MDYPDVTSVV 710 (848)
Q Consensus 701 -lDip~V~~VI 710 (848)
+...++.++|
T Consensus 189 ~~~~~~l~~lV 199 (853)
T 2fsf_A 189 ERVQRKLHYAL 199 (853)
T ss_dssp GCCCCSCCEEE
T ss_pred HhcccCCcEEE
Confidence 4556777766
No 422
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=32.26 E-value=17 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456788999999999994
No 423
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=32.25 E-value=20 Score=34.27 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..+.-+++.|+.|||||+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466788999999999994
No 424
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.24 E-value=27 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577999999999994
No 425
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=32.08 E-value=11 Score=38.43 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45689999999999985
No 426
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=32.07 E-value=20 Score=36.89 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.9
Q ss_pred hCCCCEEEEcCCCCcchH
Q 003100 414 LEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTl 431 (848)
..|.-+.+.+|.|||||+
T Consensus 44 ~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKST 61 (260)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357788899999999999
No 427
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=31.80 E-value=41 Score=27.60 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcc
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 672 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls 672 (848)
.++.+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35679999999988999999999999985 5555 7654
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=31.80 E-value=20 Score=36.07 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=15.4
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788899999999999
No 429
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=31.79 E-value=56 Score=38.08 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=41.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhhhhhhcCCCcEEEeCh
Q 003100 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (848)
Q Consensus 457 ~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~~IIV~TP 515 (848)
++||.++|+.-|..+++.+.+. ++.+..++|.. .......+..+..+|||||.
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc
Confidence 6999999999999988887765 56788888753 33355566677789999994
No 430
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=31.79 E-value=43 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcch
Q 003100 635 TPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 635 ~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
..+.+++|||.+-..+...+..|...|+....+.|++..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 356789999999999999999999999866788888764
No 431
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=31.73 E-value=19 Score=37.42 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47778899999999999
No 432
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=31.72 E-value=29 Score=31.57 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~ 673 (848)
.+.+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4678999999999999999999999995 8888998753
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=31.64 E-value=20 Score=36.55 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.8
Q ss_pred hCCCCEEEEcCCCCcchH
Q 003100 414 LEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTl 431 (848)
..|.-+.+.+|.|||||+
T Consensus 33 ~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 434
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=31.53 E-value=33 Score=31.68 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=33.0
Q ss_pred CCceEEEEEecc--hHHHHHHHHHHHhccceeeecCCcch
Q 003100 636 PDYKVIVFCSTG--MVTSLLYLLLREMKMNVREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~--~~a~~l~~~L~~~~~~v~~lhg~ls~ 673 (848)
.+.++||||.+- ..+...+..|...|+.+..+.|++..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 456899999987 68889999999999999999999754
No 435
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.50 E-value=28 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.|+.|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 368999999999994
No 436
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=31.48 E-value=27 Score=33.11 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+++.++.|||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355678999999999994
No 437
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=31.04 E-value=20 Score=35.96 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=15.1
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999998
No 438
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=30.82 E-value=1.2e+02 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=20.7
Q ss_pred CcEEEeChHHHHHHHHhccCcccccCCccEEEEecccc
Q 003100 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (848)
Q Consensus 508 ~~IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVIDEAH~ 545 (848)
.+++-+.+..+...+..- ...+++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l------~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD------LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH------TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh------cCCCCEEEEECCCC
Confidence 466666667776666543 23578999996544
No 439
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=30.80 E-value=30 Score=32.77 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.1
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.|+.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999994
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.72 E-value=21 Score=36.57 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.7
Q ss_pred hCCCCEEEEcCCCCcchH
Q 003100 414 LEGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTl 431 (848)
..|.-+.+.+|.|||||+
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred eCCCEEEEECCCCCCHHH
Confidence 357778899999999999
No 441
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.68 E-value=20 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-++++|+.|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578999999999994
No 442
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.64 E-value=18 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999984
No 443
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=30.51 E-value=43 Score=35.65 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 419 AVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 419 vIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
+.+.|++|||||+. +-++..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 56889999999994 445555554
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=30.42 E-value=21 Score=36.84 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 47778899999999999
No 445
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=30.40 E-value=21 Score=37.31 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
.-++++|+.|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999994
No 446
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.34 E-value=19 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999999
No 447
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=30.15 E-value=44 Score=41.46 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred CcccccCcccCC-C-CHHHHHHHHHcCCC----CCcHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 374 PILSQKRFDECG-I-SPLTIKALTAAGYI----QMTRVQEATLSACLE---GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 374 ~~~~~~~f~~l~-l-~~~l~~~L~~~g~~----~~t~iQ~~aI~~il~---g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
-+....+|..++ + ++.+++........ +++.+-..|+..++. ++.+||.|.+|+|||.+. --+++++..
T Consensus 93 iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest-K~im~yLa~ 170 (1052)
T 4anj_A 93 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT-KFVLRYLTE 170 (1052)
T ss_dssp EEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH-HHHHHHHHH
Confidence 344567788885 4 77888777643222 334555667666653 568999999999999984 345666654
No 448
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=30.12 E-value=28 Score=36.88 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=18.8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHHHH
Q 003100 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (848)
Q Consensus 416 g~dvIv~a~TGSGKTlaflLPil~~l~~ 443 (848)
|.-+.|.|++|||||+ ++-+|..++.
T Consensus 90 g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 4456799999999999 4445555554
No 449
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=30.11 E-value=22 Score=36.56 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+-+++++||--.-+|......+..++..+...-.+++++
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456788888887777666666666666553333344444
No 450
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=30.06 E-value=36 Score=36.84 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCCCEEEEcCCCCcchHHHHHHHHHHHH
Q 003100 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTlaflLPil~~l~ 442 (848)
.|.-+++.++.|+|||.. ++.++..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~ 88 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQ 88 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 467789999999999985 444444443
No 451
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.98 E-value=76 Score=35.37 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
.+++++.+|+|+|||+.
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999984
No 452
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.80 E-value=23 Score=35.94 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778899999999999
No 453
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=29.78 E-value=2.2e+02 Score=29.08 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCCceEEEEeCCcchhHhh---
Q 003100 424 KTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ--- 500 (848)
Q Consensus 424 ~TGSGKTlaflLPil~~l~~~~~~~~~~~~~~~~vLIL~PTreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~--- 500 (848)
...+||..+ +.-++..+.... -++||.+.++..+..+...+.... ++.+..+.|+.+.....
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~~----------~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDEG----------DKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHTT----------CCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHhCC----------CeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHH
Confidence 456788775 555665554322 268999999998888877776643 45677888887654333
Q ss_pred hhhhcC-CCc-EEEeChHHHHHHHHhccCcccccCCccEEEEe
Q 003100 501 RRLESD-PCQ-ILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541 (848)
Q Consensus 501 ~~l~~~-~~~-IIV~TPgrLl~~L~~~~~~~~~l~~l~~lVID 541 (848)
..+..+ .+. ++++|- . .+.-+++...++||+=
T Consensus 157 ~~F~~~~~~~v~L~st~-~--------~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 157 SKFQNNPSVKFIVLSVK-A--------GGFGINLTSANRVIHF 190 (271)
T ss_dssp HHHHHCTTCCEEEEECC-T--------TCCCCCCTTCSEEEEC
T ss_pred HHhcCCCCCCEEEEehh-h--------hcCCcCcccCCEEEEE
Confidence 233334 455 555652 1 1223556677777653
No 454
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=29.71 E-value=30 Score=38.77 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
...++++.||+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 356899999999999995
No 455
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.57 E-value=32 Score=36.03 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.6
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+.|.|++|||||+.
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356889999999984
No 456
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=29.56 E-value=25 Score=32.87 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+++++.+..|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5788999999999995
No 457
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=29.49 E-value=35 Score=31.43 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=32.6
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcch
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQ 673 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~ 673 (848)
.+.+++|||.+...+...+..|...|+. +..+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 4678999999999999999999999985 8888888753
No 458
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=29.45 E-value=31 Score=32.81 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.|+.|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 55678999999999995
No 459
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=29.39 E-value=22 Score=35.34 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
...+++.|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999994
No 460
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.33 E-value=29 Score=33.44 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355688999999999994
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=29.08 E-value=24 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778899999999999
No 462
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.08 E-value=44 Score=32.09 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=12.7
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 463
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=28.84 E-value=37 Score=30.76 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=32.1
Q ss_pred CCceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcc
Q 003100 636 PDYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKP 672 (848)
Q Consensus 636 ~~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls 672 (848)
.+.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4578999999988888999999999994 888989984
No 464
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=28.81 E-value=18 Score=38.34 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.5
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+++|+|||||+
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 47788899999999999
No 465
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=28.77 E-value=24 Score=36.37 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 47778899999999999
No 466
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.77 E-value=23 Score=34.61 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.2
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999995
No 467
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=28.74 E-value=25 Score=36.18 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
.+-+++++||.-.-+|......+..++..+...-.+++++
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiiv 202 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4456777777777777666666666665553323344444
No 468
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=28.73 E-value=21 Score=41.98 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=48.2
Q ss_pred CceEEEEEecchHHHHH-HHHHHHhc---cceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-cc-----------cc
Q 003100 637 DYKVIVFCSTGMVTSLL-YLLLREMK---MNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-SA-----------RG 700 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l-~~~L~~~~---~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l~-----------rG 700 (848)
..++||.+|+..-+... +..|.... +.+..+||+.+...+...+. +...|||+|.- +. ..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 36899999999888888 88887764 79999999987765544332 56889999842 22 23
Q ss_pred ccCCCCCeeE
Q 003100 701 MDYPDVTSVV 710 (848)
Q Consensus 701 lDip~V~~VI 710 (848)
+.+..+++||
T Consensus 132 ~~~~~~~lvV 141 (699)
T 4gl2_A 132 VQLSDFSLII 141 (699)
T ss_dssp CCGGGCSEEE
T ss_pred eecccCcEEE
Confidence 5667788877
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=28.70 E-value=25 Score=36.47 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=27.3
Q ss_pred cCCccEEEEecccccccccchhhHHHHHHhcCcc-ceeEEEe
Q 003100 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFS 572 (848)
Q Consensus 532 l~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~-~Q~ll~S 572 (848)
+.+-++|++||.-.-+|......+..++..+... -.+++++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 3456788888888888877777777777766432 3344444
No 470
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=28.61 E-value=16 Score=35.72 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=15.6
Q ss_pred HhCCCCEEEEcCCCCcchHH
Q 003100 413 CLEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 413 il~g~dvIv~a~TGSGKTla 432 (848)
+..+.-+.+.|++|||||+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 33455677999999999984
No 471
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=28.50 E-value=25 Score=35.92 Aligned_cols=38 Identities=29% Similarity=0.218 Sum_probs=23.0
Q ss_pred ccEEEEecccccccccchhhHHHHHHhcCccceeEEEe
Q 003100 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (848)
Q Consensus 535 l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~~Q~ll~S 572 (848)
-+++++||.-.-+|......+..++..+...-.+++++
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45777777777777666666666666554333344443
No 472
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=28.42 E-value=28 Score=33.06 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
..+++.++.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3588999999999995
No 473
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.35 E-value=25 Score=40.83 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=14.0
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999983
No 474
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=28.33 E-value=1e+02 Score=35.21 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=49.9
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhc---CCCceEEEEeCCcch--hHhhhhhhcCCCc---EEEeChHHHHHHHHhccC
Q 003100 456 IYVLILCPTRELASQIAAEAIALLKN---HDGIGVLTLVGGTRF--KVDQRRLESDPCQ---ILVATPGRLLDHIENKSG 527 (848)
Q Consensus 456 ~~vLIL~PTreLa~Qi~~~l~~l~~~---~~~i~v~~l~gg~~~--~~~~~~l~~~~~~---IIV~TPgrLl~~L~~~~~ 527 (848)
.++||.|+++.-|..+++.+.+.... ...-.+..++|.... ......+..+..+ |+||| +.+..
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~~--- 511 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLTT--- 511 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTTT---
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chhhc---
Confidence 37999999999999999988876431 112235666776542 2223444443333 67776 22222
Q ss_pred cccccCCccEEEEeccc
Q 003100 528 LSVRLMGLKMLVLDEAD 544 (848)
Q Consensus 528 ~~~~l~~l~~lVIDEAH 544 (848)
-+++..+++||++..-
T Consensus 512 -GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 -GVDAPTCKNVVLARVV 527 (590)
T ss_dssp -TCCCTTEEEEEEESCC
T ss_pred -CccchheeEEEEEecC
Confidence 2567789999986553
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=28.32 E-value=25 Score=36.22 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 47778899999999999
No 476
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=28.08 E-value=32 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.4
Q ss_pred hCCCCEEEEcCCCCcchHH
Q 003100 414 LEGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 414 l~g~dvIv~a~TGSGKTla 432 (848)
..|.-+++.|++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 4577888999999999985
No 477
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=27.98 E-value=25 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.392 Sum_probs=15.2
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 47778899999999999
No 478
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=27.88 E-value=22 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.|+.|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 55688999999999994
No 479
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.85 E-value=24 Score=33.51 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.3
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.|+.|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999995
No 480
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.79 E-value=27 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCcchHH
Q 003100 417 KDAVVKAKTGTGKSIA 432 (848)
Q Consensus 417 ~dvIv~a~TGSGKTla 432 (848)
+.+++.++.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999994
No 481
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.78 E-value=25 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCcchH
Q 003100 415 EGKDAVVKAKTGTGKSI 431 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTl 431 (848)
.|.-+.+.+|.|||||+
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999999
No 482
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=27.60 E-value=25 Score=35.95 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccccchhhHHHHHHhcCcc-ceeEEEe
Q 003100 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFS 572 (848)
Q Consensus 533 ~~l~~lVIDEAH~ll~~gf~~~l~~Il~~l~~~-~Q~ll~S 572 (848)
.+-+++++||.-.-+|......+..++..+... -.+++++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445778888888877776677777776665433 3345544
No 483
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=27.59 E-value=1e+02 Score=30.85 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=37.7
Q ss_pred CceEEEEEecchHHHHHHHHHHHhccc-eeeecCCcchhhHHHHHHHHhcCCceEEEecC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREMKMN-VREMYSRKPQLYRDRISEEFRASKRLILVTSD 695 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTd 695 (848)
..++||+|++..-+..+++.+...++. +..++|+... ...|+|+|-
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 568999999999999999998888888 8888888642 457888883
No 484
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=27.53 E-value=34 Score=32.15 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.6
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 688999999999985
No 485
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=27.44 E-value=1.6e+02 Score=27.78 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc
Q 003100 618 ELHFQILHHLLKEHILGTPDYKVIVFCSTGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS 697 (848)
Q Consensus 618 ~~k~~~L~~lL~~~~~~~~~~kiLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl 697 (848)
..-...+...+.. ... ....+-|.|.+..++..+...|...++.+..+.+... .....|.|+|--.
T Consensus 44 ~~e~~~i~~~I~~-~~~-g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~ 109 (174)
T 3dmn_A 44 EAGVDQVVDQLAM-NDS-ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFL 109 (174)
T ss_dssp HHHHHHHHHHHHH-HHH-TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGG
T ss_pred HHHHHHHHHHHHH-hcc-CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccc
Confidence 3344455555544 222 2567999999999999999999998888877765432 1234799999999
Q ss_pred cccccCCCCCeeEEcCC
Q 003100 698 ARGMDYPDVTSVVQVGI 714 (848)
Q Consensus 698 ~rGlDip~V~~VI~yd~ 714 (848)
+.|+.+ +.||.+++
T Consensus 110 ~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 110 AKGLEF---DAVIVWNA 123 (174)
T ss_dssp CTTCCE---EEEEEETC
T ss_pred cCCcCC---CEEEEecC
Confidence 999987 55666654
No 486
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=27.30 E-value=26 Score=34.35 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.2
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+++.|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999995
No 487
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.29 E-value=35 Score=33.56 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=13.1
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-.++.|+.|||||+.
T Consensus 7 i~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 7 ICLITGTPGSGKTLK 21 (199)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 357999999999995
No 488
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=27.20 E-value=94 Score=37.76 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=49.0
Q ss_pred CceEEEEEecchHHHHHHHHHHH----hccceeeecCCcchhhHHHHHHHHhcCCceEEEecCC-c-----c-------c
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLRE----MKMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDV-S-----A-------R 699 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdv-l-----~-------r 699 (848)
+.+++|.++|..-|.+.++.+.. +|+.+.++.|+++...|.... ..+|+++|+- + . .
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 56899999998887776666544 589999999999876665443 3689999962 1 1 1
Q ss_pred cccCCCCCeeE
Q 003100 700 GMDYPDVTSVV 710 (848)
Q Consensus 700 GlDip~V~~VI 710 (848)
.+...++.++|
T Consensus 226 ~l~lr~l~~lI 236 (922)
T 1nkt_A 226 DLVQRGHHYAI 236 (922)
T ss_dssp GCCCCCCCEEE
T ss_pred hhccCCCCEEE
Confidence 35566777766
No 489
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.12 E-value=23 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+++.|+.|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34588999999999995
No 490
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=27.06 E-value=2e+02 Score=24.78 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=32.2
Q ss_pred CceEEEEEe------cchHHHHHHHHHHHhccceeeecCCcchhhHHHHHH
Q 003100 637 DYKVIVFCS------TGMVTSLLYLLLREMKMNVREMYSRKPQLYRDRISE 681 (848)
Q Consensus 637 ~~kiLVF~~------s~~~a~~l~~~L~~~~~~v~~lhg~ls~~~R~~i~~ 681 (848)
..+++||.. .|-.|..+..+|.+.++.+..+.=......+..+.+
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 458999987 499999999999999887766553333444444433
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=26.92 E-value=35 Score=39.13 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.9
Q ss_pred CCCCEEEEcCCCCcchHH
Q 003100 415 EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 415 ~g~dvIv~a~TGSGKTla 432 (848)
.+..+++.+|+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999984
No 492
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=26.85 E-value=49 Score=35.09 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
++-+.+.+++|+|||+.
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45577889999999985
No 493
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=26.84 E-value=71 Score=32.96 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=49.7
Q ss_pred CceEEEEEecchHHHHHHHHHHHh----ccceeeecCCcchhhHHHHHHHHhcCCceEEEecCCc-----c-ccccCCCC
Q 003100 637 DYKVIVFCSTGMVTSLLYLLLREM----KMNVREMYSRKPQLYRDRISEEFRASKRLILVTSDVS-----A-RGMDYPDV 706 (848)
Q Consensus 637 ~~kiLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ls~~~R~~i~~~F~~G~~~VLVaTdvl-----~-rGlDip~V 706 (848)
..++||.+|++.-+..+++.+.+. +..+..++|+.+....... +. ...|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 468999999999999999888764 4688899998876544332 22 37899999421 1 23456677
Q ss_pred CeeEE
Q 003100 707 TSVVQ 711 (848)
Q Consensus 707 ~~VI~ 711 (848)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77773
No 494
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=26.73 E-value=38 Score=32.87 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=13.8
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+.-+.+.|+.|||||+.
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34567999999999984
No 495
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=26.56 E-value=25 Score=33.98 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.1
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
.+.+.|+.|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467999999999994
No 496
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=26.55 E-value=27 Score=33.74 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.2
Q ss_pred CEEEEcCCCCcchHH
Q 003100 418 DAVVKAKTGTGKSIA 432 (848)
Q Consensus 418 dvIv~a~TGSGKTla 432 (848)
-+++.|+.|||||.+
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999984
No 497
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=26.46 E-value=78 Score=34.84 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHh---CCCCEEEEcCCCCcchHH
Q 003100 407 EATLSACL---EGKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 407 ~~aI~~il---~g~dvIv~a~TGSGKTla 432 (848)
..+|..++ .|+.+.+.+++|+|||..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 34555444 589999999999999994
No 498
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.45 E-value=28 Score=34.28 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCcchHH
Q 003100 416 GKDAVVKAKTGTGKSIA 432 (848)
Q Consensus 416 g~dvIv~a~TGSGKTla 432 (848)
+..+++.|+.|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999994
No 499
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=26.43 E-value=27 Score=33.86 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.5
Q ss_pred EEEEcCCCCcchHH
Q 003100 419 AVVKAKTGTGKSIA 432 (848)
Q Consensus 419 vIv~a~TGSGKTla 432 (848)
+.+.|+.|||||++
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999994
No 500
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.31 E-value=35 Score=33.55 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=22.6
Q ss_pred ccEEEEeccccccccc--chhhHHHHHHhc----CccceeEEEecc
Q 003100 535 LKMLVLDEADHLLDLG--FRKDVENIVDCL----PRRRQSLLFSAT 574 (848)
Q Consensus 535 l~~lVIDEAH~ll~~g--f~~~l~~Il~~l----~~~~Q~ll~SAT 574 (848)
-.+|||||||.++... ..+.+ .++..+ .+..++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 11111 233333 234578887766
Done!