Query 003104
Match_columns 847
No_of_seqs 681 out of 5611
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 17:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.8E-89 6E-94 855.0 64.8 745 1-783 193-1098(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-52 2.1E-56 490.7 21.1 556 2-604 168-848 (889)
3 PLN00113 leucine-rich repeat r 100.0 9.2E-31 2E-35 328.0 21.2 401 236-638 42-469 (968)
4 PLN00113 leucine-rich repeat r 100.0 9.1E-30 2E-34 319.1 20.2 223 260-482 92-321 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 6.7E-26 1.5E-30 243.7 5.7 193 1-197 5-284 (287)
6 KOG0444 Cytoskeletal regulator 99.9 9.3E-26 2E-30 242.7 -4.7 339 262-606 33-383 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.7E-24 3.7E-29 232.2 3.3 222 261-482 78-306 (873)
8 KOG0444 Cytoskeletal regulator 99.9 3.1E-25 6.8E-30 238.6 -3.1 299 255-581 72-379 (1255)
9 PLN03210 Resistant to P. syrin 99.9 2.1E-21 4.5E-26 244.2 26.3 317 304-630 556-913 (1153)
10 KOG4194 Membrane glycoprotein 99.9 1.7E-23 3.6E-28 224.7 3.5 362 264-633 55-428 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.3E-23 2.7E-28 216.7 -11.2 347 280-634 109-541 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 3.2E-22 6.9E-27 206.5 -12.5 259 285-575 45-308 (565)
13 KOG0618 Serine/threonine phosp 99.8 2.9E-21 6.2E-26 218.4 -6.1 349 266-632 26-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.9E-17 4.1E-22 194.0 17.2 259 310-639 205-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 6.7E-17 1.4E-21 189.5 19.0 256 265-579 205-460 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 3.9E-17 8.4E-22 192.8 13.6 244 285-575 178-426 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 2.5E-16 5.4E-21 186.0 14.4 228 305-582 177-405 (754)
18 KOG0618 Serine/threonine phosp 99.7 5E-18 1.1E-22 192.4 -2.8 199 280-481 194-419 (1081)
19 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 147.6 -4.8 164 348-562 30-194 (264)
20 KOG0617 Ras suppressor protein 99.5 7.7E-16 1.7E-20 142.1 -5.2 158 307-466 34-193 (264)
21 KOG4237 Extracellular matrix p 99.4 4.5E-15 9.8E-20 154.0 -3.2 261 318-581 58-339 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.8E-14 3.8E-19 157.4 -1.6 228 328-575 23-289 (319)
23 KOG4237 Extracellular matrix p 99.4 1.3E-14 2.8E-19 150.6 -3.1 258 293-575 54-357 (498)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.5E-14 3.2E-19 158.1 -3.0 263 279-575 17-318 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.3 5E-12 1.1E-16 152.0 7.4 210 370-581 567-787 (889)
26 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 3E-17 141.5 -2.7 211 333-575 55-271 (722)
27 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.3E-14 123.5 7.0 197 355-581 97-294 (394)
28 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.6E-15 123.2 -0.9 64 512-575 267-337 (505)
29 KOG3207 Beta-tubulin folding c 98.9 2.8E-10 6E-15 120.5 0.6 62 514-575 244-312 (505)
30 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.1E-14 120.7 7.2 191 289-483 97-291 (394)
31 KOG0532 Leucine-rich repeat (L 98.8 1E-10 2.2E-15 127.3 -5.3 188 287-479 77-270 (722)
32 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.8E-14 109.8 2.0 126 420-575 282-410 (490)
33 KOG1909 Ran GTPase-activating 98.8 1.3E-10 2.8E-15 120.0 -5.3 199 345-575 86-309 (382)
34 KOG1259 Nischarin, modulator o 98.6 5.7E-09 1.2E-13 105.2 0.6 129 328-460 284-413 (490)
35 PF14580 LRR_9: Leucine-rich r 98.6 3.2E-08 6.9E-13 96.3 4.2 104 282-385 16-124 (175)
36 PF14580 LRR_9: Leucine-rich r 98.6 3.6E-08 7.7E-13 96.0 3.3 134 319-478 10-149 (175)
37 PRK15386 type III secretion pr 98.5 8.7E-07 1.9E-11 96.5 11.1 31 564-594 156-186 (426)
38 PRK09376 rho transcription ter 98.5 3.1E-07 6.8E-12 98.8 7.4 98 16-115 170-274 (416)
39 PLN03150 hypothetical protein; 98.4 4E-07 8.6E-12 107.9 8.6 105 353-457 420-526 (623)
40 PLN03150 hypothetical protein; 98.4 3.4E-07 7.3E-12 108.5 7.7 107 375-481 419-527 (623)
41 PRK15386 type III secretion pr 98.4 8E-07 1.7E-11 96.8 9.8 54 421-480 51-105 (426)
42 cd01128 rho_factor Transcripti 98.4 4.1E-07 8.8E-12 94.2 6.0 94 16-111 17-117 (249)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.4E-13 103.2 -7.3 177 376-574 187-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.3E-13 101.5 -7.3 177 329-527 186-374 (419)
45 KOG0531 Protein phosphatase 1, 98.2 1.1E-07 2.5E-12 107.4 -2.6 83 394-480 114-197 (414)
46 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.4E-12 105.4 -1.1 100 284-385 71-173 (414)
47 KOG4341 F-box protein containi 98.2 3.8E-08 8.1E-13 104.1 -6.6 252 347-631 160-436 (483)
48 KOG1909 Ran GTPase-activating 98.2 2.8E-07 6.1E-12 95.6 -0.7 214 326-575 28-281 (382)
49 PF13401 AAA_22: AAA domain; P 98.1 7E-06 1.5E-10 76.7 7.8 90 15-109 4-99 (131)
50 TIGR00767 rho transcription te 98.1 4.7E-06 1E-10 90.4 7.1 94 16-111 169-269 (415)
51 PF13855 LRR_8: Leucine rich r 98.1 2.9E-06 6.2E-11 67.7 3.2 56 329-384 2-59 (61)
52 PRK00411 cdc6 cell division co 98.1 8.1E-05 1.7E-09 83.9 16.0 106 2-109 40-150 (394)
53 PF05729 NACHT: NACHT domain 98.0 2.1E-05 4.6E-10 76.6 7.9 88 16-111 1-95 (166)
54 TIGR03015 pepcterm_ATPase puta 97.9 4.2E-05 9.2E-10 81.3 10.0 89 15-110 43-136 (269)
55 PF13855 LRR_8: Leucine rich r 97.9 1.6E-05 3.4E-10 63.4 4.5 13 419-431 46-58 (61)
56 TIGR02928 orc1/cdc6 family rep 97.8 9.7E-05 2.1E-09 82.3 10.7 104 2-109 25-141 (365)
57 KOG2982 Uncharacterized conser 97.8 8.2E-06 1.8E-10 82.9 1.5 212 326-604 69-287 (418)
58 KOG4341 F-box protein containi 97.7 9E-07 2E-11 93.9 -6.3 260 351-631 138-422 (483)
59 KOG1859 Leucine-rich repeat pr 97.7 5.4E-07 1.2E-11 101.1 -9.2 122 423-575 165-290 (1096)
60 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 56.6 3.3 41 541-582 1-41 (44)
61 KOG1859 Leucine-rich repeat pr 97.7 8E-07 1.7E-11 99.8 -8.1 177 278-459 102-292 (1096)
62 cd00009 AAA The AAA+ (ATPases 97.6 0.00023 4.9E-09 67.3 9.1 28 14-41 18-45 (151)
63 PF13191 AAA_16: AAA ATPase do 97.6 0.00027 5.9E-09 70.2 9.1 41 2-42 10-51 (185)
64 KOG2982 Uncharacterized conser 97.6 3.3E-05 7.1E-10 78.7 2.3 205 398-629 71-287 (418)
65 PF13173 AAA_14: AAA domain 97.5 0.00013 2.9E-09 67.8 5.7 34 16-50 3-36 (128)
66 cd01133 F1-ATPase_beta F1 ATP 97.5 0.00029 6.4E-09 73.4 8.5 94 16-111 70-177 (274)
67 COG5238 RNA1 Ran GTPase-activa 97.4 9.3E-06 2E-10 81.5 -3.5 41 345-385 86-131 (388)
68 KOG3665 ZYG-1-like serine/thre 97.4 3.6E-05 7.8E-10 91.2 0.3 154 398-574 122-285 (699)
69 COG1474 CDC6 Cdc6-related prot 97.4 0.0021 4.6E-08 70.6 13.4 146 18-191 45-201 (366)
70 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 3.8E-09 52.8 3.3 40 516-557 1-40 (44)
71 PRK08118 topology modulation p 97.3 0.00019 4E-09 70.2 3.6 34 16-49 2-38 (167)
72 PRK04841 transcriptional regul 97.3 0.0027 5.8E-08 79.9 14.9 72 159-233 260-335 (903)
73 smart00382 AAA ATPases associa 97.3 0.00068 1.5E-08 63.5 7.3 88 16-110 3-91 (148)
74 COG2256 MGS1 ATPase related to 97.3 0.00063 1.4E-08 72.9 7.2 78 12-115 45-124 (436)
75 PF04665 Pox_A32: Poxvirus A32 97.0 0.0011 2.4E-08 67.8 6.4 148 17-193 15-170 (241)
76 PF01637 Arch_ATPase: Archaeal 97.0 0.00087 1.9E-08 69.2 5.8 47 2-50 9-55 (234)
77 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0016 3.4E-08 67.2 7.3 47 2-50 27-73 (226)
78 PRK09361 radB DNA repair and r 97.0 0.0039 8.4E-08 64.3 9.9 49 2-50 10-58 (225)
79 PRK12608 transcription termina 97.0 0.0031 6.8E-08 68.4 9.1 94 16-111 134-234 (380)
80 KOG3665 ZYG-1-like serine/thre 96.9 0.00041 8.9E-09 82.4 2.4 131 420-575 120-261 (699)
81 PRK06893 DNA replication initi 96.9 0.0014 3E-08 67.7 6.0 35 16-50 40-74 (229)
82 PRK07261 topology modulation p 96.8 0.0045 9.7E-08 60.7 8.6 23 17-39 2-24 (171)
83 PRK08116 hypothetical protein; 96.8 0.0048 1E-07 65.1 9.3 74 16-107 115-188 (268)
84 KOG2543 Origin recognition com 96.8 0.0048 1E-07 65.7 8.8 105 2-113 16-131 (438)
85 PF00004 AAA: ATPase family as 96.8 0.0025 5.5E-08 59.2 6.0 23 18-40 1-23 (132)
86 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.7E-08 60.5 3.7 23 17-39 1-23 (121)
87 PRK11331 5-methylcytosine-spec 96.7 0.0038 8.3E-08 69.3 7.9 85 16-110 195-285 (459)
88 PTZ00112 origin recognition co 96.7 0.0072 1.6E-07 71.3 10.3 91 15-109 781-881 (1164)
89 KOG2028 ATPase related to the 96.7 0.0036 7.9E-08 65.8 7.0 76 11-109 158-234 (554)
90 PRK07952 DNA replication prote 96.7 0.0081 1.8E-07 62.2 9.4 36 15-50 99-134 (244)
91 PRK13342 recombination factor 96.7 0.0033 7.2E-08 71.0 7.3 31 13-43 34-64 (413)
92 PF00308 Bac_DnaA: Bacterial d 96.6 0.02 4.3E-07 58.6 11.9 74 14-108 33-108 (219)
93 PRK05541 adenylylsulfate kinas 96.6 0.0069 1.5E-07 59.7 8.2 35 16-50 8-42 (176)
94 PTZ00202 tuzin; Provisional 96.6 0.011 2.5E-07 64.7 10.2 90 2-104 272-368 (550)
95 PRK12377 putative replication 96.6 0.0075 1.6E-07 62.6 8.6 36 15-50 101-136 (248)
96 COG5238 RNA1 Ran GTPase-activa 96.6 0.00055 1.2E-08 69.1 -0.1 59 516-574 185-252 (388)
97 PRK07667 uridine kinase; Provi 96.6 0.0044 9.6E-08 62.1 6.4 41 2-42 4-44 (193)
98 KOG4579 Leucine-rich repeat (L 96.5 0.00013 2.9E-09 66.2 -4.3 79 307-385 54-134 (177)
99 PRK07003 DNA polymerase III su 96.5 0.052 1.1E-06 64.0 15.3 26 15-40 38-63 (830)
100 TIGR00678 holB DNA polymerase 96.5 0.13 2.8E-06 51.3 16.5 36 3-40 3-39 (188)
101 PRK06762 hypothetical protein; 96.5 0.013 2.9E-07 57.1 9.2 24 16-39 3-26 (166)
102 KOG1947 Leucine rich repeat pr 96.5 0.00029 6.2E-09 81.5 -3.3 34 350-383 187-223 (482)
103 PRK08727 hypothetical protein; 96.5 0.0053 1.2E-07 63.5 6.4 35 16-50 42-76 (233)
104 PRK14963 DNA polymerase III su 96.5 0.0085 1.8E-07 68.9 8.6 36 15-50 36-73 (504)
105 PRK13341 recombination factor 96.5 0.0054 1.2E-07 73.3 7.2 31 13-43 50-80 (725)
106 PHA00729 NTP-binding motif con 96.4 0.011 2.4E-07 59.8 8.3 28 13-40 15-42 (226)
107 PRK09183 transposase/IS protei 96.4 0.011 2.4E-07 62.1 8.7 34 16-49 103-136 (259)
108 PRK04195 replication factor C 96.4 0.051 1.1E-06 62.8 14.8 39 2-40 24-64 (482)
109 PRK14961 DNA polymerase III su 96.4 0.041 8.8E-07 61.1 13.4 26 15-40 38-63 (363)
110 KOG2739 Leucine-rich acidic nu 96.4 0.0018 3.8E-08 65.7 2.3 85 511-597 60-155 (260)
111 TIGR02237 recomb_radB DNA repa 96.4 0.012 2.7E-07 59.8 8.6 44 7-50 4-47 (209)
112 COG0572 Udk Uridine kinase [Nu 96.4 0.008 1.7E-07 60.1 6.8 30 13-42 6-35 (218)
113 PRK14957 DNA polymerase III su 96.3 0.085 1.8E-06 61.0 15.9 26 15-40 38-63 (546)
114 KOG1644 U2-associated snRNP A' 96.3 0.007 1.5E-07 59.0 5.9 103 328-432 42-150 (233)
115 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.015 3.3E-07 60.2 8.9 49 2-50 6-60 (235)
116 cd01393 recA_like RecA is a b 96.3 0.031 6.7E-07 57.6 11.1 49 2-50 6-60 (226)
117 cd01394 radB RadB. The archaea 96.3 0.012 2.6E-07 60.2 8.0 49 2-50 6-54 (218)
118 PRK08233 hypothetical protein; 96.3 0.014 2.9E-07 57.9 8.0 26 15-40 3-28 (182)
119 KOG1947 Leucine rich repeat pr 96.2 0.00028 6.1E-09 81.6 -5.2 35 373-407 187-223 (482)
120 KOG4579 Leucine-rich repeat (L 96.2 0.00043 9.3E-09 62.9 -2.8 60 514-575 75-134 (177)
121 PRK08084 DNA replication initi 96.2 0.009 2E-07 61.9 6.4 37 14-50 44-80 (235)
122 PRK14956 DNA polymerase III su 96.2 0.032 7E-07 62.9 11.0 25 16-40 41-65 (484)
123 PF00448 SRP54: SRP54-type pro 96.2 0.012 2.6E-07 59.0 6.9 35 16-50 2-36 (196)
124 COG1618 Predicted nucleotide k 96.2 0.0061 1.3E-07 57.2 4.3 39 15-53 5-45 (179)
125 KOG1644 U2-associated snRNP A' 96.2 0.01 2.2E-07 57.8 6.0 104 351-480 42-151 (233)
126 PF00485 PRK: Phosphoribulokin 96.1 0.0046 1E-07 62.1 3.9 26 17-42 1-26 (194)
127 PRK05564 DNA polymerase III su 96.1 0.059 1.3E-06 58.5 12.7 25 15-39 26-50 (313)
128 KOG2739 Leucine-rich acidic nu 96.1 0.0027 5.8E-08 64.4 1.9 79 307-385 44-127 (260)
129 PRK06526 transposase; Provisio 96.1 0.012 2.5E-07 61.6 6.7 28 15-42 98-125 (254)
130 PRK12422 chromosomal replicati 96.1 0.019 4.1E-07 65.1 8.9 35 16-50 142-176 (445)
131 PRK05642 DNA replication initi 96.1 0.017 3.7E-07 59.7 7.9 35 16-50 46-80 (234)
132 PRK08181 transposase; Validate 96.1 0.02 4.3E-07 60.2 8.4 35 16-50 107-141 (269)
133 PLN03025 replication factor C 96.1 0.12 2.7E-06 56.2 14.9 27 15-41 34-60 (319)
134 PRK06696 uridine kinase; Valid 96.1 0.0093 2E-07 61.3 5.8 40 3-42 9-49 (223)
135 PRK06921 hypothetical protein; 96.0 0.026 5.6E-07 59.5 8.9 36 15-50 117-153 (266)
136 PF13238 AAA_18: AAA domain; P 96.0 0.0055 1.2E-07 56.6 3.4 22 18-39 1-22 (129)
137 PRK00149 dnaA chromosomal repl 96.0 0.014 3.1E-07 66.7 7.5 30 15-44 148-177 (450)
138 PF01695 IstB_IS21: IstB-like 96.0 0.017 3.6E-07 57.0 7.0 36 15-50 47-82 (178)
139 TIGR00362 DnaA chromosomal rep 96.0 0.015 3.2E-07 65.7 7.5 28 16-43 137-164 (405)
140 PF07728 AAA_5: AAA domain (dy 96.0 0.01 2.2E-07 56.0 5.1 22 18-39 2-23 (139)
141 PRK14088 dnaA chromosomal repl 96.0 0.012 2.5E-07 66.9 6.4 107 15-144 130-249 (440)
142 cd01120 RecA-like_NTPases RecA 95.9 0.017 3.6E-07 55.7 6.6 34 17-50 1-34 (165)
143 PRK05480 uridine/cytidine kina 95.9 0.0072 1.6E-07 61.5 4.1 27 13-39 4-30 (209)
144 PRK14955 DNA polymerase III su 95.9 0.07 1.5E-06 60.0 12.3 25 16-40 39-63 (397)
145 cd01121 Sms Sms (bacterial rad 95.9 0.047 1E-06 60.3 10.6 49 2-50 69-117 (372)
146 TIGR03689 pup_AAA proteasome A 95.9 0.012 2.7E-07 67.1 6.1 28 15-42 216-243 (512)
147 PLN00020 ribulose bisphosphate 95.8 0.013 2.9E-07 62.9 5.6 31 13-43 146-176 (413)
148 TIGR00235 udk uridine kinase. 95.8 0.0099 2.1E-07 60.4 4.5 28 13-40 4-31 (207)
149 TIGR03499 FlhF flagellar biosy 95.8 0.043 9.4E-07 58.5 9.5 28 14-41 193-220 (282)
150 KOG0735 AAA+-type ATPase [Post 95.8 0.027 5.9E-07 64.5 8.1 71 17-107 433-504 (952)
151 PF01583 APS_kinase: Adenylyls 95.8 0.014 3E-07 55.7 5.0 35 16-50 3-37 (156)
152 PTZ00301 uridine kinase; Provi 95.8 0.0083 1.8E-07 60.7 3.7 30 15-44 3-32 (210)
153 COG1484 DnaC DNA replication p 95.7 0.038 8.2E-07 57.8 8.6 37 14-50 104-140 (254)
154 PRK08356 hypothetical protein; 95.7 0.036 7.8E-07 55.6 8.0 20 16-35 6-25 (195)
155 PF05621 TniB: Bacterial TniB 95.7 0.056 1.2E-06 56.9 9.4 102 2-108 47-156 (302)
156 PRK06645 DNA polymerase III su 95.6 0.17 3.6E-06 58.2 14.0 26 15-40 43-68 (507)
157 PRK11889 flhF flagellar biosyn 95.6 0.066 1.4E-06 58.6 10.0 37 14-50 240-276 (436)
158 TIGR00635 ruvB Holliday juncti 95.6 0.022 4.7E-07 61.7 6.3 29 14-42 29-57 (305)
159 PRK09087 hypothetical protein; 95.6 0.022 4.7E-07 58.6 5.9 23 16-38 45-67 (226)
160 PRK12323 DNA polymerase III su 95.6 0.26 5.6E-06 57.5 15.0 26 15-40 38-63 (700)
161 TIGR01242 26Sp45 26S proteasom 95.6 0.021 4.5E-07 63.5 6.2 29 15-43 156-184 (364)
162 PRK08691 DNA polymerase III su 95.5 0.28 6E-06 57.8 15.4 25 15-39 38-62 (709)
163 PRK08939 primosomal protein Dn 95.5 0.057 1.2E-06 58.1 9.3 36 15-50 156-191 (306)
164 PRK09270 nucleoside triphospha 95.5 0.016 3.4E-07 59.9 4.8 32 11-42 29-60 (229)
165 PRK05896 DNA polymerase III su 95.5 0.12 2.7E-06 60.0 12.4 26 15-40 38-63 (605)
166 PRK12678 transcription termina 95.5 0.022 4.8E-07 64.5 6.0 97 16-114 417-520 (672)
167 PRK14087 dnaA chromosomal repl 95.5 0.031 6.8E-07 63.6 7.4 74 16-108 142-217 (450)
168 PRK03839 putative kinase; Prov 95.5 0.012 2.5E-07 58.3 3.5 24 17-40 2-25 (180)
169 KOG0744 AAA+-type ATPase [Post 95.4 0.095 2.1E-06 54.8 9.9 159 16-212 178-352 (423)
170 PRK14960 DNA polymerase III su 95.4 0.34 7.4E-06 56.6 15.5 26 15-40 37-62 (702)
171 PRK14949 DNA polymerase III su 95.4 0.33 7.2E-06 58.6 15.7 27 15-41 38-64 (944)
172 PRK00080 ruvB Holliday junctio 95.4 0.05 1.1E-06 59.5 8.5 29 14-42 50-78 (328)
173 cd02019 NK Nucleoside/nucleoti 95.4 0.023 4.9E-07 46.3 4.4 23 17-39 1-23 (69)
174 PF05496 RuvB_N: Holliday junc 95.4 0.017 3.7E-07 58.0 4.3 32 13-44 48-79 (233)
175 PRK14962 DNA polymerase III su 95.4 0.21 4.5E-06 57.2 13.6 25 16-40 37-61 (472)
176 PRK06835 DNA replication prote 95.4 0.028 6.1E-07 61.0 6.3 35 16-50 184-218 (329)
177 PF13671 AAA_33: AAA domain; P 95.4 0.13 2.9E-06 48.4 10.3 24 17-40 1-24 (143)
178 PRK04040 adenylate kinase; Pro 95.4 0.016 3.5E-07 57.7 4.1 25 16-40 3-27 (188)
179 cd01131 PilT Pilus retraction 95.3 0.043 9.4E-07 55.2 7.1 89 16-114 2-91 (198)
180 PRK00440 rfc replication facto 95.2 0.72 1.6E-05 50.1 16.7 38 3-42 28-65 (319)
181 cd02028 UMPK_like Uridine mono 95.1 0.024 5.2E-07 56.0 4.5 26 17-42 1-26 (179)
182 PRK04301 radA DNA repair and r 95.1 0.087 1.9E-06 57.3 9.3 48 3-50 90-143 (317)
183 PRK07994 DNA polymerase III su 95.1 0.29 6.2E-06 57.7 13.9 25 16-40 39-63 (647)
184 PRK14954 DNA polymerase III su 95.1 0.28 6E-06 57.9 13.8 26 15-40 38-63 (620)
185 PRK06217 hypothetical protein; 95.1 0.099 2.1E-06 51.9 8.8 24 17-40 3-26 (183)
186 PRK14722 flhF flagellar biosyn 95.1 0.093 2E-06 57.6 9.2 29 15-43 137-165 (374)
187 PRK09280 F0F1 ATP synthase sub 95.1 0.067 1.4E-06 60.1 8.2 93 16-111 145-252 (463)
188 cd03115 SRP The signal recogni 95.1 0.12 2.5E-06 50.8 9.1 26 17-42 2-27 (173)
189 PRK00625 shikimate kinase; Pro 95.0 0.019 4.1E-07 56.3 3.3 24 17-40 2-25 (173)
190 COG0468 RecA RecA/RadA recombi 95.0 0.14 3E-06 53.9 9.9 101 4-109 49-153 (279)
191 COG1428 Deoxynucleoside kinase 95.0 0.019 4.1E-07 56.7 3.2 26 15-40 4-29 (216)
192 TIGR00602 rad24 checkpoint pro 95.0 0.028 6.1E-07 65.9 5.2 39 2-40 94-135 (637)
193 PRK06547 hypothetical protein; 95.0 0.025 5.4E-07 55.4 4.0 28 12-39 12-39 (172)
194 PRK12723 flagellar biosynthesi 95.0 0.14 3.1E-06 56.7 10.3 27 14-40 173-199 (388)
195 cd02025 PanK Pantothenate kina 95.0 0.018 3.9E-07 59.0 3.1 24 17-40 1-24 (220)
196 PRK06002 fliI flagellum-specif 94.9 0.053 1.1E-06 60.7 6.9 90 16-111 166-268 (450)
197 cd02023 UMPK Uridine monophosp 94.9 0.017 3.7E-07 58.2 2.8 23 17-39 1-23 (198)
198 PRK14969 DNA polymerase III su 94.9 0.57 1.2E-05 54.5 15.6 25 16-40 39-63 (527)
199 PF07726 AAA_3: ATPase family 94.9 0.017 3.6E-07 52.8 2.4 27 18-44 2-28 (131)
200 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.8E-07 56.6 3.6 26 14-39 2-27 (188)
201 TIGR00064 ftsY signal recognit 94.9 0.19 4E-06 53.2 10.7 37 13-49 70-106 (272)
202 PF00910 RNA_helicase: RNA hel 94.9 0.018 3.9E-07 51.6 2.6 26 18-43 1-26 (107)
203 PF00006 ATP-synt_ab: ATP synt 94.9 0.034 7.4E-07 56.3 4.8 90 16-111 16-119 (215)
204 cd01130 VirB11-like_ATPase Typ 94.9 0.04 8.7E-07 54.8 5.3 94 15-115 25-118 (186)
205 PRK12402 replication factor C 94.8 0.071 1.5E-06 58.5 7.6 29 14-42 35-63 (337)
206 PRK05703 flhF flagellar biosyn 94.8 0.16 3.4E-06 57.4 10.4 36 15-50 221-258 (424)
207 COG0466 Lon ATP-dependent Lon 94.8 0.068 1.5E-06 61.8 7.4 93 2-109 333-429 (782)
208 PRK14964 DNA polymerase III su 94.8 0.46 1E-05 54.3 14.0 24 16-39 36-59 (491)
209 PRK00131 aroK shikimate kinase 94.8 0.023 5E-07 55.7 3.3 25 16-40 5-29 (175)
210 PRK12727 flagellar biosynthesi 94.8 0.096 2.1E-06 59.5 8.5 28 15-42 350-377 (559)
211 PRK14970 DNA polymerase III su 94.8 0.43 9.2E-06 53.1 13.8 27 15-41 39-65 (367)
212 PRK03846 adenylylsulfate kinas 94.8 0.04 8.7E-07 55.5 5.1 36 14-49 23-58 (198)
213 PRK07764 DNA polymerase III su 94.8 0.29 6.3E-06 59.6 13.1 25 16-40 38-62 (824)
214 PRK14958 DNA polymerase III su 94.7 0.51 1.1E-05 54.6 14.5 24 16-39 39-62 (509)
215 TIGR03574 selen_PSTK L-seryl-t 94.7 0.062 1.4E-06 56.2 6.6 26 17-42 1-26 (249)
216 PRK10751 molybdopterin-guanine 94.7 0.037 8.1E-07 53.9 4.5 29 13-41 4-32 (173)
217 cd02027 APSK Adenosine 5'-phos 94.7 0.14 3E-06 48.9 8.4 24 17-40 1-24 (149)
218 cd02024 NRK1 Nicotinamide ribo 94.7 0.021 4.7E-07 56.5 2.8 23 17-39 1-23 (187)
219 PRK00889 adenylylsulfate kinas 94.7 0.042 9.1E-07 54.1 4.9 26 16-41 5-30 (175)
220 KOG2123 Uncharacterized conser 94.7 0.0012 2.7E-08 66.9 -5.9 93 311-404 24-123 (388)
221 PRK00771 signal recognition pa 94.7 0.18 3.8E-06 56.9 10.3 29 14-42 94-122 (437)
222 PRK13947 shikimate kinase; Pro 94.7 0.026 5.6E-07 55.3 3.3 26 17-42 3-28 (171)
223 PRK06067 flagellar accessory p 94.6 0.25 5.5E-06 51.1 10.7 48 2-50 12-60 (234)
224 PRK11823 DNA repair protein Ra 94.6 0.2 4.3E-06 57.1 10.5 49 2-50 67-115 (446)
225 TIGR02236 recomb_radA DNA repa 94.6 0.17 3.6E-06 54.9 9.6 48 3-50 83-136 (310)
226 PF03205 MobB: Molybdopterin g 94.5 0.047 1E-06 51.5 4.6 35 16-50 1-36 (140)
227 PF00560 LRR_1: Leucine Rich R 94.5 0.013 2.8E-07 35.9 0.4 21 542-562 1-21 (22)
228 PRK03992 proteasome-activating 94.5 0.062 1.4E-06 60.1 6.3 29 14-42 164-192 (389)
229 PRK14086 dnaA chromosomal repl 94.5 0.12 2.5E-06 60.2 8.5 72 16-108 315-388 (617)
230 PRK08903 DnaA regulatory inact 94.5 0.058 1.3E-06 55.6 5.6 37 14-50 41-77 (227)
231 KOG2123 Uncharacterized conser 94.5 0.0015 3.3E-08 66.3 -5.9 77 330-409 21-99 (388)
232 PLN02318 phosphoribulokinase/u 94.5 0.044 9.5E-07 62.8 4.9 35 5-39 55-89 (656)
233 cd01135 V_A-ATPase_B V/A-type 94.5 0.19 4.2E-06 52.5 9.3 92 16-111 70-180 (276)
234 TIGR02322 phosphon_PhnN phosph 94.4 0.031 6.8E-07 55.2 3.3 25 16-40 2-26 (179)
235 smart00763 AAA_PrkA PrkA AAA d 94.4 0.046 9.9E-07 59.3 4.6 28 13-40 76-103 (361)
236 cd00071 GMPK Guanosine monopho 94.4 0.027 5.8E-07 53.0 2.5 27 17-43 1-27 (137)
237 PRK12597 F0F1 ATP synthase sub 94.4 0.13 2.8E-06 58.1 8.3 93 16-111 144-251 (461)
238 TIGR02397 dnaX_nterm DNA polym 94.3 0.46 1E-05 52.5 12.8 26 15-40 36-61 (355)
239 TIGR00176 mobB molybdopterin-g 94.3 0.048 1E-06 52.4 4.2 26 17-42 1-26 (155)
240 TIGR02012 tigrfam_recA protein 94.3 0.16 3.5E-06 54.7 8.6 48 3-50 42-90 (321)
241 cd00227 CPT Chloramphenicol (C 94.3 0.038 8.2E-07 54.4 3.6 25 16-40 3-27 (175)
242 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.088 1.9E-06 55.0 6.3 91 16-110 70-174 (274)
243 PRK05922 type III secretion sy 94.3 0.089 1.9E-06 58.8 6.8 91 16-111 158-261 (434)
244 COG1100 GTPase SAR1 and relate 94.3 0.14 3.1E-06 52.2 7.9 23 16-38 6-28 (219)
245 TIGR00416 sms DNA repair prote 94.3 0.23 5E-06 56.6 10.2 49 2-50 81-129 (454)
246 PRK14952 DNA polymerase III su 94.2 1.2 2.6E-05 52.2 16.2 26 15-40 35-60 (584)
247 PRK12726 flagellar biosynthesi 94.2 0.23 5E-06 54.3 9.5 37 14-50 205-241 (407)
248 cd00983 recA RecA is a bacter 94.2 0.18 3.9E-06 54.3 8.7 48 3-50 42-90 (325)
249 cd00464 SK Shikimate kinase (S 94.1 0.042 9.1E-07 52.6 3.3 23 18-40 2-24 (154)
250 PRK13949 shikimate kinase; Pro 94.1 0.04 8.6E-07 53.9 3.2 24 17-40 3-26 (169)
251 PF12775 AAA_7: P-loop contain 94.1 0.047 1E-06 57.8 3.9 23 16-38 34-56 (272)
252 TIGR03263 guanyl_kin guanylate 94.1 0.035 7.6E-07 54.8 2.8 24 16-39 2-25 (180)
253 COG4608 AppF ABC-type oligopep 94.1 0.15 3.3E-06 52.6 7.3 89 16-106 40-136 (268)
254 TIGR02238 recomb_DMC1 meiotic 94.0 0.19 4.2E-06 54.2 8.5 60 2-65 83-148 (313)
255 cd01136 ATPase_flagellum-secre 94.0 0.13 2.9E-06 55.4 7.3 91 16-111 70-173 (326)
256 PRK08972 fliI flagellum-specif 94.0 0.049 1.1E-06 60.7 4.0 91 16-111 163-266 (444)
257 PRK08149 ATP synthase SpaL; Va 94.0 0.12 2.6E-06 57.8 7.0 91 16-111 152-255 (428)
258 PRK14974 cell division protein 94.0 0.35 7.6E-06 52.6 10.5 29 14-42 139-167 (336)
259 COG0003 ArsA Predicted ATPase 94.0 0.084 1.8E-06 56.8 5.6 36 15-50 2-37 (322)
260 TIGR02782 TrbB_P P-type conjug 94.0 0.15 3.3E-06 54.7 7.6 87 16-115 133-222 (299)
261 PRK13946 shikimate kinase; Pro 94.0 0.042 9.1E-07 54.6 3.1 25 16-40 11-35 (184)
262 PRK07940 DNA polymerase III su 94.0 0.98 2.1E-05 50.4 14.2 26 15-40 36-61 (394)
263 PRK13975 thymidylate kinase; P 94.0 0.051 1.1E-06 54.5 3.8 26 16-41 3-28 (196)
264 PRK09354 recA recombinase A; P 94.0 0.19 4.2E-06 54.5 8.3 48 3-50 47-95 (349)
265 PF08433 KTI12: Chromatin asso 93.9 0.14 3E-06 54.0 7.1 25 17-41 3-27 (270)
266 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.089 1.9E-06 49.9 5.2 34 16-50 27-60 (144)
267 PRK10867 signal recognition pa 93.9 0.35 7.6E-06 54.4 10.6 28 15-42 100-127 (433)
268 COG0593 DnaA ATPase involved i 93.9 0.11 2.4E-06 57.4 6.4 73 15-107 113-185 (408)
269 cd01129 PulE-GspE PulE/GspE Th 93.9 0.22 4.8E-06 52.5 8.6 85 16-113 81-165 (264)
270 PRK05057 aroK shikimate kinase 93.9 0.046 1E-06 53.6 3.2 25 16-40 5-29 (172)
271 PRK00300 gmk guanylate kinase; 93.9 0.043 9.3E-07 55.5 3.1 24 16-39 6-29 (205)
272 PRK08927 fliI flagellum-specif 93.9 0.13 2.9E-06 57.4 7.1 91 16-111 159-262 (442)
273 PRK14951 DNA polymerase III su 93.9 0.99 2.2E-05 53.2 14.5 25 15-39 38-62 (618)
274 COG1373 Predicted ATPase (AAA+ 93.9 0.16 3.6E-06 56.8 7.9 25 17-41 39-63 (398)
275 TIGR00554 panK_bact pantothena 93.8 0.051 1.1E-06 57.7 3.6 28 13-40 60-87 (290)
276 cd02020 CMPK Cytidine monophos 93.8 0.046 1E-06 51.8 3.1 23 17-39 1-23 (147)
277 PTZ00454 26S protease regulato 93.8 0.15 3.3E-06 56.9 7.5 30 14-43 178-207 (398)
278 TIGR01425 SRP54_euk signal rec 93.8 0.33 7.2E-06 54.3 10.1 28 15-42 100-127 (429)
279 PRK07594 type III secretion sy 93.8 0.064 1.4E-06 60.0 4.5 24 16-39 156-179 (433)
280 PRK13948 shikimate kinase; Pro 93.8 0.047 1E-06 53.9 3.1 27 14-40 9-35 (182)
281 COG0563 Adk Adenylate kinase a 93.8 0.19 4.2E-06 49.4 7.4 23 17-39 2-24 (178)
282 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.043 9.4E-07 54.4 2.9 23 17-39 1-23 (183)
283 TIGR01039 atpD ATP synthase, F 93.8 0.18 3.9E-06 56.6 7.9 93 16-111 144-251 (461)
284 PF07724 AAA_2: AAA domain (Cd 93.8 0.073 1.6E-06 52.1 4.4 35 15-49 3-38 (171)
285 COG1124 DppF ABC-type dipeptid 93.8 0.046 9.9E-07 55.2 2.9 22 16-37 34-55 (252)
286 PRK13695 putative NTPase; Prov 93.8 0.071 1.5E-06 52.4 4.3 33 17-49 2-35 (174)
287 KOG1969 DNA replication checkp 93.7 0.19 4E-06 58.3 7.9 77 13-110 324-400 (877)
288 PRK10078 ribose 1,5-bisphospho 93.7 0.047 1E-06 54.4 2.9 24 16-39 3-26 (186)
289 PRK14493 putative bifunctional 93.7 0.085 1.8E-06 55.7 5.0 34 16-50 2-35 (274)
290 TIGR02788 VirB11 P-type DNA tr 93.7 0.1 2.3E-06 56.4 5.8 93 14-115 143-236 (308)
291 PRK13768 GTPase; Provisional 93.7 0.092 2E-06 55.0 5.1 28 15-42 2-29 (253)
292 COG1936 Predicted nucleotide k 93.7 0.05 1.1E-06 52.0 2.8 20 17-36 2-21 (180)
293 PF13306 LRR_5: Leucine rich r 93.7 0.28 6.2E-06 45.1 8.0 75 329-407 36-112 (129)
294 TIGR03498 FliI_clade3 flagella 93.6 0.086 1.9E-06 58.9 5.0 25 16-40 141-165 (418)
295 PRK10865 protein disaggregatio 93.6 0.22 4.7E-06 61.5 8.9 25 17-41 201-225 (857)
296 PRK08472 fliI flagellum-specif 93.5 0.095 2.1E-06 58.6 5.2 24 16-39 158-181 (434)
297 CHL00095 clpC Clp protease ATP 93.5 0.22 4.8E-06 61.4 8.9 37 2-40 189-225 (821)
298 cd00820 PEPCK_HprK Phosphoenol 93.5 0.063 1.4E-06 47.6 3.1 22 15-36 15-36 (107)
299 cd02021 GntK Gluconate kinase 93.5 0.051 1.1E-06 51.9 2.8 22 17-38 1-22 (150)
300 PRK09435 membrane ATPase/prote 93.5 0.17 3.6E-06 54.9 6.9 31 12-42 53-83 (332)
301 PRK14953 DNA polymerase III su 93.5 1.5 3.3E-05 50.4 15.1 26 15-40 38-63 (486)
302 cd02029 PRK_like Phosphoribulo 93.5 0.33 7E-06 50.5 8.6 25 17-41 1-25 (277)
303 PRK06820 type III secretion sy 93.5 0.078 1.7E-06 59.4 4.5 23 16-38 164-186 (440)
304 PF13306 LRR_5: Leucine rich r 93.5 0.29 6.3E-06 45.0 7.8 77 326-407 10-90 (129)
305 KOG2004 Mitochondrial ATP-depe 93.5 0.16 3.5E-06 58.6 6.9 42 3-44 422-467 (906)
306 COG0703 AroK Shikimate kinase 93.5 0.062 1.3E-06 51.8 3.1 89 17-105 4-103 (172)
307 PF00625 Guanylate_kin: Guanyl 93.5 0.067 1.5E-06 53.1 3.6 35 15-49 2-36 (183)
308 cd03116 MobB Molybdenum is an 93.5 0.12 2.6E-06 49.8 5.1 27 16-42 2-28 (159)
309 PRK14950 DNA polymerase III su 93.5 0.3 6.6E-06 57.7 9.6 26 15-40 38-63 (585)
310 PLN02348 phosphoribulokinase 93.4 0.1 2.2E-06 57.2 5.1 30 12-41 46-75 (395)
311 COG1763 MobB Molybdopterin-gua 93.4 0.067 1.5E-06 51.3 3.3 35 16-50 3-37 (161)
312 PRK14959 DNA polymerase III su 93.4 1.1 2.5E-05 52.4 13.8 26 15-40 38-63 (624)
313 PRK14738 gmk guanylate kinase; 93.4 0.06 1.3E-06 54.6 3.1 32 7-38 5-36 (206)
314 TIGR00073 hypB hydrogenase acc 93.3 0.11 2.5E-06 52.6 5.1 29 12-40 19-47 (207)
315 PF05673 DUF815: Protein of un 93.3 0.21 4.6E-06 51.0 6.8 27 16-42 53-79 (249)
316 cd01983 Fer4_NifH The Fer4_Nif 93.3 0.1 2.3E-06 45.1 4.2 25 17-41 1-25 (99)
317 COG0237 CoaE Dephospho-CoA kin 93.3 0.064 1.4E-06 53.7 3.1 22 16-37 3-24 (201)
318 PTZ00088 adenylate kinase 1; P 93.3 0.32 7E-06 50.0 8.3 22 18-39 9-30 (229)
319 PRK06936 type III secretion sy 93.3 0.16 3.4E-06 56.8 6.4 91 16-111 163-266 (439)
320 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.2 4.3E-06 56.2 7.2 93 16-111 139-246 (449)
321 PRK04296 thymidine kinase; Pro 93.2 0.14 3.1E-06 51.1 5.5 34 16-49 3-36 (190)
322 COG0194 Gmk Guanylate kinase [ 93.2 0.098 2.1E-06 50.8 4.1 29 16-46 5-33 (191)
323 TIGR02639 ClpA ATP-dependent C 93.2 0.22 4.7E-06 60.7 8.1 25 17-41 205-229 (731)
324 TIGR00455 apsK adenylylsulfate 93.2 0.34 7.4E-06 48.0 8.2 26 15-40 18-43 (184)
325 TIGR02546 III_secr_ATP type II 93.2 0.16 3.5E-06 57.1 6.4 92 15-111 145-249 (422)
326 PRK04182 cytidylate kinase; Pr 93.2 0.072 1.6E-06 52.5 3.3 24 17-40 2-25 (180)
327 cd01672 TMPK Thymidine monopho 93.1 0.2 4.3E-06 50.2 6.5 25 17-41 2-26 (200)
328 TIGR00959 ffh signal recogniti 93.1 0.61 1.3E-05 52.5 10.8 26 15-40 99-124 (428)
329 PRK14721 flhF flagellar biosyn 93.1 0.49 1.1E-05 52.9 9.9 24 15-38 191-214 (420)
330 PRK14737 gmk guanylate kinase; 93.1 0.2 4.3E-06 49.8 6.3 25 15-39 4-28 (186)
331 cd02034 CooC The accessory pro 93.1 0.14 3.1E-06 46.5 4.8 25 18-42 2-26 (116)
332 PF00437 T2SE: Type II/IV secr 93.1 0.2 4.3E-06 53.2 6.6 99 3-115 115-215 (270)
333 TIGR02239 recomb_RAD51 DNA rep 93.0 0.36 7.9E-06 52.2 8.7 49 2-50 83-137 (316)
334 PRK15453 phosphoribulokinase; 93.0 0.14 3.1E-06 53.5 5.2 28 13-40 3-30 (290)
335 PRK06761 hypothetical protein; 93.0 0.08 1.7E-06 55.9 3.4 27 16-42 4-30 (282)
336 KOG1532 GTPase XAB1, interacts 93.0 0.081 1.8E-06 53.9 3.3 38 14-52 18-55 (366)
337 PF03266 NTPase_1: NTPase; In 93.0 0.12 2.5E-06 50.5 4.4 32 18-49 2-34 (168)
338 TIGR01313 therm_gnt_kin carboh 93.0 0.057 1.2E-06 52.4 2.3 22 18-39 1-22 (163)
339 COG3640 CooC CO dehydrogenase 93.0 0.15 3.3E-06 51.2 5.1 25 17-41 2-26 (255)
340 COG4088 Predicted nucleotide k 93.0 0.18 3.9E-06 49.5 5.5 31 17-47 3-33 (261)
341 PRK05439 pantothenate kinase; 93.0 0.1 2.3E-06 55.8 4.3 29 13-41 84-112 (311)
342 PRK10463 hydrogenase nickel in 93.0 0.17 3.6E-06 53.5 5.7 34 12-45 101-134 (290)
343 PRK14530 adenylate kinase; Pro 93.0 0.083 1.8E-06 53.9 3.4 23 17-39 5-27 (215)
344 PRK07133 DNA polymerase III su 93.0 1.4 2.9E-05 52.7 13.7 25 15-39 40-64 (725)
345 TIGR03345 VI_ClpV1 type VI sec 92.9 0.22 4.8E-06 61.3 7.6 26 17-42 210-235 (852)
346 PRK09111 DNA polymerase III su 92.9 0.53 1.1E-05 55.4 10.4 26 15-40 46-71 (598)
347 PRK03731 aroL shikimate kinase 92.9 0.084 1.8E-06 51.7 3.3 25 16-40 3-27 (171)
348 TIGR00150 HI0065_YjeE ATPase, 92.9 0.11 2.4E-06 48.2 3.8 24 16-39 23-46 (133)
349 PLN02796 D-glycerate 3-kinase 92.9 0.13 2.7E-06 55.6 4.8 29 14-42 99-127 (347)
350 PRK09112 DNA polymerase III su 92.9 1.4 3.1E-05 48.4 13.1 27 15-41 45-71 (351)
351 PF00560 LRR_1: Leucine Rich R 92.9 0.055 1.2E-06 33.0 1.2 21 447-467 1-21 (22)
352 PRK07721 fliI flagellum-specif 92.9 0.16 3.6E-06 57.2 5.8 26 15-40 158-183 (438)
353 PRK12724 flagellar biosynthesi 92.9 0.5 1.1E-05 52.5 9.4 25 15-39 223-247 (432)
354 PRK12339 2-phosphoglycerate ki 92.9 0.097 2.1E-06 52.5 3.6 25 15-39 3-27 (197)
355 TIGR01287 nifH nitrogenase iro 92.8 0.065 1.4E-06 57.0 2.6 27 16-42 1-27 (275)
356 PF03308 ArgK: ArgK protein; 92.8 0.27 5.9E-06 50.5 6.8 38 5-42 19-56 (266)
357 PF03029 ATP_bind_1: Conserved 92.8 0.1 2.2E-06 54.0 3.9 24 20-43 1-24 (238)
358 PF08423 Rad51: Rad51; InterP 92.8 0.29 6.2E-06 51.4 7.3 103 2-109 25-145 (256)
359 COG3903 Predicted ATPase [Gene 92.8 0.07 1.5E-06 58.0 2.7 89 13-109 12-100 (414)
360 PRK14723 flhF flagellar biosyn 92.8 0.5 1.1E-05 56.5 9.9 26 15-40 185-210 (767)
361 PRK09825 idnK D-gluconate kina 92.8 0.089 1.9E-06 51.8 3.2 25 16-40 4-28 (176)
362 PRK14965 DNA polymerase III su 92.8 1.1 2.3E-05 52.9 12.7 26 15-40 38-63 (576)
363 TIGR03496 FliI_clade1 flagella 92.7 0.2 4.3E-06 56.0 6.2 90 16-111 138-241 (411)
364 PF00005 ABC_tran: ABC transpo 92.7 0.088 1.9E-06 49.3 3.0 24 16-39 12-35 (137)
365 PF08477 Miro: Miro-like prote 92.7 0.097 2.1E-06 47.5 3.2 20 18-37 2-21 (119)
366 COG2255 RuvB Holliday junction 92.7 0.093 2E-06 54.1 3.3 31 14-44 51-81 (332)
367 COG2019 AdkA Archaeal adenylat 92.7 0.094 2E-06 49.7 3.0 25 15-39 4-28 (189)
368 TIGR02881 spore_V_K stage V sp 92.7 0.11 2.3E-06 54.9 3.9 27 14-40 41-67 (261)
369 PRK06305 DNA polymerase III su 92.6 1.8 3.9E-05 49.4 13.9 25 16-40 40-64 (451)
370 PRK06995 flhF flagellar biosyn 92.6 0.53 1.1E-05 53.6 9.5 26 15-40 256-281 (484)
371 TIGR01243 CDC48 AAA family ATP 92.6 0.24 5.2E-06 60.4 7.4 28 15-42 212-239 (733)
372 cd03223 ABCD_peroxisomal_ALDP 92.6 0.25 5.3E-06 48.2 6.1 24 16-39 28-51 (166)
373 TIGR03575 selen_PSTK_euk L-ser 92.6 0.37 8E-06 52.3 7.9 23 18-40 2-24 (340)
374 PRK06620 hypothetical protein; 92.6 0.091 2E-06 53.5 3.1 24 16-39 45-68 (214)
375 TIGR03324 alt_F1F0_F1_al alter 92.6 0.28 6E-06 55.7 7.1 90 16-111 163-268 (497)
376 PRK08533 flagellar accessory p 92.6 0.16 3.4E-06 52.4 4.9 47 3-50 12-59 (230)
377 PLN03187 meiotic recombination 92.5 0.49 1.1E-05 51.6 8.8 61 2-66 113-179 (344)
378 cd04139 RalA_RalB RalA/RalB su 92.5 0.092 2E-06 50.5 3.0 21 17-37 2-22 (164)
379 PF00142 Fer4_NifH: 4Fe-4S iro 92.5 0.21 4.5E-06 51.5 5.4 35 16-50 1-35 (273)
380 TIGR01420 pilT_fam pilus retra 92.5 0.36 7.9E-06 53.0 7.9 88 16-113 123-211 (343)
381 TIGR02173 cyt_kin_arch cytidyl 92.5 0.1 2.3E-06 50.8 3.3 23 17-39 2-24 (171)
382 PTZ00035 Rad51 protein; Provis 92.5 0.7 1.5E-05 50.5 9.9 36 2-37 105-140 (337)
383 cd02022 DPCK Dephospho-coenzym 92.5 0.089 1.9E-06 52.0 2.8 21 17-37 1-21 (179)
384 PRK10416 signal recognition pa 92.5 0.19 4E-06 54.5 5.4 29 14-42 113-141 (318)
385 TIGR00763 lon ATP-dependent pr 92.5 0.28 6E-06 60.1 7.6 29 15-43 347-375 (775)
386 PTZ00185 ATPase alpha subunit; 92.5 0.38 8.2E-06 54.4 7.8 35 16-50 190-232 (574)
387 TIGR03497 FliI_clade2 flagella 92.5 0.22 4.8E-06 55.7 6.2 26 15-40 137-162 (413)
388 PRK14526 adenylate kinase; Pro 92.5 0.56 1.2E-05 47.6 8.6 22 18-39 3-24 (211)
389 PRK10865 protein disaggregatio 92.4 0.66 1.4E-05 57.3 10.8 27 15-41 598-624 (857)
390 COG4240 Predicted kinase [Gene 92.4 0.59 1.3E-05 46.7 8.2 81 13-97 48-133 (300)
391 cd03114 ArgK-like The function 92.4 0.16 3.6E-06 48.3 4.4 26 17-42 1-26 (148)
392 COG1066 Sms Predicted ATP-depe 92.4 0.61 1.3E-05 50.9 9.0 98 3-108 81-179 (456)
393 TIGR01026 fliI_yscN ATPase Fli 92.4 0.23 5E-06 56.1 6.2 24 16-39 164-187 (440)
394 CHL00060 atpB ATP synthase CF1 92.4 0.55 1.2E-05 53.2 9.1 93 16-111 162-276 (494)
395 PRK08099 bifunctional DNA-bind 92.4 0.097 2.1E-06 58.5 3.2 27 13-39 217-243 (399)
396 TIGR03346 chaperone_ClpB ATP-d 92.3 0.39 8.4E-06 59.5 8.7 38 3-42 184-221 (852)
397 PLN03186 DNA repair protein RA 92.3 0.53 1.2E-05 51.4 8.7 49 2-50 110-164 (342)
398 PRK07960 fliI flagellum-specif 92.3 0.3 6.5E-06 54.8 6.8 24 16-39 176-199 (455)
399 TIGR03881 KaiC_arch_4 KaiC dom 92.3 0.27 5.9E-06 50.6 6.3 49 2-50 7-55 (229)
400 COG0529 CysC Adenylylsulfate k 92.2 0.15 3.2E-06 48.9 3.8 30 15-44 23-52 (197)
401 PF01926 MMR_HSR1: 50S ribosom 92.2 0.1 2.2E-06 47.3 2.6 20 18-37 2-21 (116)
402 KOG2227 Pre-initiation complex 92.2 0.57 1.2E-05 51.8 8.6 102 3-109 161-268 (529)
403 CHL00176 ftsH cell division pr 92.2 0.38 8.2E-06 57.1 7.9 26 15-40 216-241 (638)
404 PRK14490 putative bifunctional 92.2 0.16 3.5E-06 56.5 4.6 28 16-43 6-33 (369)
405 cd03225 ABC_cobalt_CbiO_domain 92.1 0.11 2.4E-06 52.8 3.1 34 16-50 28-61 (211)
406 PRK13900 type IV secretion sys 92.1 0.21 4.5E-06 54.5 5.3 92 15-115 160-253 (332)
407 TIGR01241 FtsH_fam ATP-depende 92.1 0.27 6E-06 57.0 6.7 25 16-40 89-113 (495)
408 PRK06647 DNA polymerase III su 92.1 1.1 2.4E-05 52.5 11.6 26 15-40 38-63 (563)
409 TIGR02655 circ_KaiC circadian 92.1 0.92 2E-05 52.4 10.9 49 2-50 250-298 (484)
410 PF13504 LRR_7: Leucine rich r 92.1 0.085 1.8E-06 30.0 1.2 9 566-574 3-11 (17)
411 COG0467 RAD55 RecA-superfamily 92.1 0.25 5.5E-06 52.0 5.8 47 4-50 12-58 (260)
412 smart00072 GuKc Guanylate kina 92.0 0.12 2.5E-06 51.4 3.0 30 15-44 2-31 (184)
413 TIGR02640 gas_vesic_GvpN gas v 92.0 0.14 3.1E-06 53.9 3.9 25 17-41 23-47 (262)
414 COG1419 FlhF Flagellar GTP-bin 92.0 1.1 2.3E-05 49.3 10.3 36 15-50 203-240 (407)
415 TIGR01040 V-ATPase_V1_B V-type 92.0 0.44 9.6E-06 53.4 7.7 25 16-40 142-166 (466)
416 COG1703 ArgK Putative periplas 91.9 0.34 7.5E-06 50.5 6.3 55 3-58 39-93 (323)
417 PRK06793 fliI flagellum-specif 91.9 0.31 6.8E-06 54.6 6.5 24 16-39 157-180 (432)
418 PRK07196 fliI flagellum-specif 91.9 0.32 6.8E-06 54.6 6.5 24 15-38 155-178 (434)
419 PF13521 AAA_28: AAA domain; P 91.9 0.13 2.9E-06 49.8 3.2 21 18-38 2-22 (163)
420 TIGR00041 DTMP_kinase thymidyl 91.9 0.39 8.6E-06 48.0 6.7 26 16-41 4-29 (195)
421 cd03229 ABC_Class3 This class 91.8 0.13 2.9E-06 50.7 3.1 34 16-50 27-60 (178)
422 PRK14489 putative bifunctional 91.8 0.19 4E-06 55.8 4.7 29 14-42 204-232 (366)
423 TIGR03877 thermo_KaiC_1 KaiC d 91.8 0.35 7.5E-06 50.2 6.4 48 2-50 8-56 (237)
424 CHL00059 atpA ATP synthase CF1 91.8 0.44 9.6E-06 53.8 7.5 91 16-111 142-247 (485)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.8 0.13 2.7E-06 52.7 3.1 34 16-50 31-64 (218)
426 cd02117 NifH_like This family 91.8 0.11 2.4E-06 52.8 2.7 26 16-41 1-26 (212)
427 PRK05688 fliI flagellum-specif 91.8 0.3 6.5E-06 54.9 6.2 91 16-111 169-272 (451)
428 cd03297 ABC_ModC_molybdenum_tr 91.7 0.14 3E-06 52.2 3.3 36 13-50 22-57 (214)
429 TIGR00750 lao LAO/AO transport 91.7 0.3 6.6E-06 52.6 6.0 31 12-42 31-61 (300)
430 PRK00698 tmk thymidylate kinas 91.7 0.17 3.7E-06 51.1 3.9 26 16-41 4-29 (205)
431 TIGR00101 ureG urease accessor 91.7 0.2 4.4E-06 50.3 4.3 26 17-42 3-28 (199)
432 PRK14494 putative molybdopteri 91.7 0.18 3.9E-06 51.5 3.9 27 16-42 2-28 (229)
433 TIGR01166 cbiO cobalt transpor 91.6 0.13 2.8E-06 51.3 2.9 34 16-50 19-52 (190)
434 PF10662 PduV-EutP: Ethanolami 91.6 0.14 3E-06 48.0 2.8 22 16-37 2-23 (143)
435 TIGR00017 cmk cytidylate kinas 91.6 0.16 3.5E-06 51.7 3.6 25 16-40 3-27 (217)
436 PRK10787 DNA-binding ATP-depen 91.6 0.36 7.8E-06 58.8 7.1 30 14-43 348-377 (784)
437 PRK14529 adenylate kinase; Pro 91.6 0.94 2E-05 46.2 9.0 23 18-40 3-25 (223)
438 cd02026 PRK Phosphoribulokinas 91.6 0.13 2.7E-06 54.5 2.8 25 17-41 1-25 (273)
439 cd00879 Sar1 Sar1 subfamily. 91.6 0.21 4.5E-06 49.7 4.3 23 15-37 19-41 (190)
440 PF13614 AAA_31: AAA domain; P 91.6 0.29 6.2E-06 47.0 5.1 35 16-50 1-36 (157)
441 cd03238 ABC_UvrA The excision 91.6 0.13 2.8E-06 50.5 2.7 21 16-36 22-42 (176)
442 PRK13230 nitrogenase reductase 91.5 0.13 2.8E-06 54.8 2.9 26 16-41 2-27 (279)
443 TIGR02868 CydC thiol reductant 91.5 0.36 7.8E-06 56.7 6.9 22 16-37 362-383 (529)
444 cd03222 ABC_RNaseL_inhibitor T 91.5 0.15 3.2E-06 50.2 3.0 33 16-49 26-58 (177)
445 PLN03046 D-glycerate 3-kinase; 91.5 0.24 5.1E-06 54.7 4.8 28 14-41 211-238 (460)
446 TIGR00960 3a0501s02 Type II (G 91.5 0.14 3.1E-06 52.2 3.1 34 16-50 30-63 (216)
447 PRK01184 hypothetical protein; 91.5 0.14 3.1E-06 50.7 3.0 18 16-33 2-19 (184)
448 PRK09099 type III secretion sy 91.4 0.29 6.3E-06 55.0 5.6 24 15-38 163-186 (441)
449 PRK07429 phosphoribulokinase; 91.4 0.25 5.4E-06 53.6 4.9 31 12-42 5-35 (327)
450 cd03259 ABC_Carb_Solutes_like 91.3 0.15 3.3E-06 51.9 3.0 33 16-49 27-59 (213)
451 cd04155 Arl3 Arl3 subfamily. 91.3 0.14 2.9E-06 50.1 2.6 24 15-38 14-37 (173)
452 TIGR02673 FtsE cell division A 91.3 0.15 3.3E-06 51.9 3.0 34 16-50 29-62 (214)
453 PLN02200 adenylate kinase fami 91.3 0.19 4.1E-06 51.9 3.7 26 14-39 42-67 (234)
454 PRK14527 adenylate kinase; Pro 91.3 0.17 3.8E-06 50.5 3.4 26 14-39 5-30 (191)
455 cd03293 ABC_NrtD_SsuB_transpor 91.3 0.15 3.3E-06 52.2 3.0 33 16-49 31-63 (220)
456 PRK09281 F0F1 ATP synthase sub 91.3 0.4 8.6E-06 54.9 6.6 91 16-111 163-268 (502)
457 PHA02575 1 deoxynucleoside mon 91.3 0.15 3.4E-06 51.3 2.9 21 17-37 2-22 (227)
458 PRK13232 nifH nitrogenase redu 91.3 0.14 3E-06 54.4 2.8 26 16-41 2-27 (273)
459 PRK13236 nitrogenase reductase 91.3 0.17 3.7E-06 54.4 3.5 31 12-42 3-33 (296)
460 PRK14971 DNA polymerase III su 91.3 2.8 6.1E-05 49.7 13.9 26 15-40 39-64 (614)
461 PLN02165 adenylate isopentenyl 91.3 0.15 3.4E-06 54.7 3.1 26 15-40 43-68 (334)
462 cd03269 ABC_putative_ATPase Th 91.2 0.15 3.3E-06 51.7 2.9 34 16-50 27-60 (210)
463 PF02374 ArsA_ATPase: Anion-tr 91.2 0.26 5.7E-06 53.1 4.8 26 16-41 2-27 (305)
464 KOG0729 26S proteasome regulat 91.2 0.34 7.3E-06 49.3 5.2 37 10-51 206-242 (435)
465 COG1123 ATPase components of v 91.2 0.15 3.2E-06 58.1 3.0 26 16-41 318-343 (539)
466 cd03235 ABC_Metallic_Cations A 91.2 0.15 3.2E-06 52.0 2.8 34 16-50 26-59 (213)
467 cd03278 ABC_SMC_barmotin Barmo 91.2 0.16 3.4E-06 51.1 2.9 23 17-39 24-46 (197)
468 cd01862 Rab7 Rab7 subfamily. 91.2 0.15 3.2E-06 49.6 2.7 21 17-37 2-22 (172)
469 cd03263 ABC_subfamily_A The AB 91.2 0.16 3.5E-06 52.0 3.0 34 16-50 29-62 (220)
470 PRK11034 clpA ATP-dependent Cl 91.2 0.56 1.2E-05 56.7 8.0 22 19-40 211-232 (758)
471 COG1126 GlnQ ABC-type polar am 91.1 0.17 3.8E-06 50.2 3.0 34 16-50 29-62 (240)
472 COG1120 FepC ABC-type cobalami 91.1 0.15 3.3E-06 52.7 2.8 34 16-50 29-62 (258)
473 cd03261 ABC_Org_Solvent_Resist 91.1 0.17 3.6E-06 52.5 3.1 33 16-49 27-59 (235)
474 PF13504 LRR_7: Leucine rich r 91.1 0.15 3.3E-06 28.9 1.5 17 541-557 1-17 (17)
475 cd01122 GP4d_helicase GP4d_hel 91.0 1.4 2.9E-05 46.7 10.1 36 15-50 30-66 (271)
476 PRK13541 cytochrome c biogenes 91.0 0.16 3.5E-06 50.9 2.9 34 16-50 27-60 (195)
477 PRK10584 putative ABC transpor 91.0 0.16 3.5E-06 52.3 2.9 34 16-50 37-70 (228)
478 PF03193 DUF258: Protein of un 91.0 0.25 5.4E-06 47.4 3.9 23 16-38 36-58 (161)
479 cd00544 CobU Adenosylcobinamid 91.0 0.84 1.8E-05 44.5 7.7 83 17-109 1-85 (169)
480 PRK13233 nifH nitrogenase redu 91.0 0.26 5.7E-06 52.4 4.6 26 16-41 3-28 (275)
481 cd03260 ABC_PstB_phosphate_tra 91.0 0.18 3.8E-06 52.0 3.2 35 16-50 27-65 (227)
482 TIGR02639 ClpA ATP-dependent C 91.0 0.43 9.3E-06 58.2 6.9 26 15-40 484-509 (731)
483 TIGR00962 atpA proton transloc 91.0 0.36 7.7E-06 55.2 5.8 91 16-111 162-267 (501)
484 PTZ00361 26 proteosome regulat 90.9 0.17 3.7E-06 57.0 3.2 29 15-43 217-245 (438)
485 cd02040 NifH NifH gene encodes 90.8 0.16 3.5E-06 53.8 2.8 26 16-41 2-27 (270)
486 TIGR02858 spore_III_AA stage I 90.8 0.85 1.8E-05 48.1 8.1 36 13-49 109-144 (270)
487 cd03296 ABC_CysA_sulfate_impor 90.8 0.18 3.8E-06 52.5 2.9 34 16-50 29-62 (239)
488 PRK05416 glmZ(sRNA)-inactivati 90.8 0.19 4.1E-06 53.5 3.2 23 14-36 5-27 (288)
489 cd01428 ADK Adenylate kinase ( 90.8 0.2 4.3E-06 50.1 3.2 22 18-39 2-23 (194)
490 cd03256 ABC_PhnC_transporter A 90.8 0.18 4E-06 52.3 3.1 34 16-50 28-61 (241)
491 PRK15455 PrkA family serine pr 90.8 0.21 4.6E-06 57.2 3.7 30 12-41 100-129 (644)
492 PHA02544 44 clamp loader, smal 90.8 0.31 6.8E-06 52.9 5.0 37 3-40 32-68 (316)
493 TIGR02315 ABC_phnC phosphonate 90.7 0.19 4E-06 52.4 3.1 34 16-50 29-62 (243)
494 PRK15177 Vi polysaccharide exp 90.7 0.18 3.9E-06 51.4 2.9 24 16-39 14-37 (213)
495 COG3638 ABC-type phosphate/pho 90.7 0.19 4.2E-06 50.6 2.9 34 16-50 31-64 (258)
496 COG4107 PhnK ABC-type phosphon 90.7 0.19 4.1E-06 47.8 2.8 31 16-46 33-63 (258)
497 cd00154 Rab Rab family. Rab G 90.7 0.19 4.2E-06 47.6 3.0 20 18-37 3-22 (159)
498 PF00154 RecA: recA bacterial 90.7 0.59 1.3E-05 50.3 6.8 90 14-111 52-145 (322)
499 cd01134 V_A-ATPase_A V/A-type 90.7 0.33 7.2E-06 52.3 4.9 33 16-50 158-190 (369)
500 smart00173 RAS Ras subfamily o 90.7 0.2 4.3E-06 48.4 3.0 21 17-37 2-22 (164)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-89 Score=855.02 Aligned_cols=745 Identities=31% Similarity=0.517 Sum_probs=593.0
Q ss_pred ChHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEec--cc---cccc------CChHHHHHHHH
Q 003104 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--RE---VSVT------RGLVPLQEQLL 69 (847)
Q Consensus 1 ~~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~--~~---~s~~------~~l~~l~~~il 69 (847)
+++|+++|+.+.++++||||||||||||||||+++|+++..+|++.+|+.+. +. .... .....++++++
T Consensus 193 l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l 272 (1153)
T PLN03210 193 IAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFL 272 (1153)
T ss_pred HHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHH
Confidence 4678899998889999999999999999999999999999999999998642 11 1111 12356788899
Q ss_pred HHHhcCCCccccchhhhHHHHHHHhcCCcEEEEEcCCCCHHHHHHHhcCCCee---------------------------
Q 003104 70 SEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWF--------------------------- 122 (847)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~~~l~~L~~~~~w~--------------------------- 122 (847)
.+++...+..... ...++++|++||+||||||||+.++|+.+++...|+
T Consensus 273 ~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 273 SEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 9887665554432 256889999999999999999999999998877775
Q ss_pred ---------------------------------------------EecccccCCCHHHHHHHHHHHhcCCccccceeeee
Q 003104 123 ---------------------------------------------VLGSFLCGRSVEEWKSALNRLQEAPNEKVLKVLRI 157 (847)
Q Consensus 123 ---------------------------------------------~lgs~L~~~~~~~W~~~l~~L~~~~~~~i~~~L~~ 157 (847)
++|+.|++++.++|++++++|++.++.+|+++|++
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~ 428 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRV 428 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 79999999999999999999999888899999999
Q ss_pred eccCCCh-hhHHHhheeeeccCCCCHHHHHHHHhhCCCChhhhHHHHhhcCceeEeCCeEeehHHHHHHHHHHhhhcCCC
Q 003104 158 SYDGLDR-RDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIVREHHSD 236 (847)
Q Consensus 158 SYd~L~~-~~k~~FL~~a~F~~~~~~~~l~~~~~~~g~~~~~~l~~L~~k~Li~~~~~~~~mHdll~~~~~~i~~~e~~~ 236 (847)
|||+|++ .+|.||+||||||++++++++..++.++|+.++.+++.|++|+||++..++++|||++|+||++|+++++ .
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~ 507 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-N 507 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-C
Confidence 9999987 5999999999999999999999999999999999999999999999998899999999999999999998 8
Q ss_pred CCCCeeeccCchhHHHHHhcCcCCCcEEEEEecCC--CccccCchhhcCCCCCcEEEEcCc----------ccCCCcccc
Q 003104 237 KPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVP--EMTELEAKSFSTMSNLRLLEINNL----------YSSGNLEYL 304 (847)
Q Consensus 237 ~p~~~~rL~~~~d~~~vl~~~~~~~~v~~l~l~~~--~~~~l~~~~f~~~~~Lr~L~l~~~----------~l~~~~~~~ 304 (847)
+|++|+|+|.++|+++++.+++|+.++++|+++.+ ....+...+|.+|++|++|.+..+ ++++++..+
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 89999999999999999999999999999999987 456678899999999999999654 356677778
Q ss_pred CCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc
Q 003104 305 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 384 (847)
Q Consensus 305 ~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c 384 (847)
+.+||+|+|.+++++++|..|.+.+|++|+|++|+++.+|.+++.+++|+.|+|++|..+..+|+++.+++|++|+|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
..+..+|.+++++++|+.|++++|..++.+|..+ ++++|++|++++|..++.+|.. .++|+.|++++|.++.+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc
Confidence 9999999999999999999999999999999877 8999999999999999888865 45789999999999988876
Q ss_pred ccCCCC-------------------------------CCEEEeCCCCCCCCCcCcchhhccccc-CCCCCCCccccCCCC
Q 003104 465 IVQLVN-------------------------------LKIFSLHGCKGQPPKILSSNFFLSLLL-PNKNSDSMCLSFPRF 512 (847)
Q Consensus 465 i~~l~~-------------------------------L~~L~L~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~l~~l 512 (847)
+ .+++ |+.|++++|......|.+...+..|.. ...++... ..+|..
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~ 821 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL-ETLPTG 821 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc-CeeCCC
Confidence 4 3444 444555554433333444444444421 12222222 234443
Q ss_pred CCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCC---CCcce
Q 003104 513 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP---PEIVF 589 (847)
Q Consensus 513 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~ 589 (847)
..+++|+.|+|++|..+. .+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~-~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 822 INLESLESLDLSGCSRLR-TFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCccccCEEECCCCCccc-ccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 356666666666665442 34432 357888999999999999999999999999999999999998654 67788
Q ss_pred eeccCCccccccccccccC------------CCCCceEEEccCCCcchhhhhhhhHHHHHHHHHhhcCCCCCCceEEecC
Q 003104 590 VGAEDCTSLETISAFAKLS------------RSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLP 657 (847)
Q Consensus 590 L~i~~c~~L~~l~~~~~~~------------~~~~~~~~~~nc~~L~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~lp 657 (847)
+++.+|++|+.++...... ........|.||.+|..-.. .+ .......+.+|
T Consensus 898 L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~-------------l~---~~~~~~~~~l~ 961 (1153)
T PLN03210 898 VDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL-------------LQ---QQSIFKQLILS 961 (1153)
T ss_pred eecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-------------hc---ccccceEEECC
Confidence 8999999999876532100 00113457889998842111 10 11223467899
Q ss_pred CCCCCCCcccccCCCeEE-EEcCC---CCCeeeEEEEEEEecCCCCC-CcceeeEEEEEeCCCcceEEEeeCCCccccCC
Q 003104 658 GNEIPRWFRFRNIGGSVT-MTAPR---LDNFIGFAVCAVLSLPRCMD-RFYSEIQCKLLWGEDDYKFSVAIPSFTTLESD 732 (847)
Q Consensus 658 g~~iP~wf~~~~~g~si~-~~lp~---~~~~~g~~~c~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 732 (847)
|.++|+||.||+.|++++ |++|+ ...|.||++|+|+++..... .....+.|.|.+.+..- .... ....+
T Consensus 962 g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~-----~~~~~ 1035 (1153)
T PLN03210 962 GEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG-NHFD-----SPYQP 1035 (1153)
T ss_pred CccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCC-Cccc-----cCCCc
Confidence 999999999999999998 99987 45799999999998765422 23456777777765210 0000 11245
Q ss_pred eEEEEEeCccch----------hh---hhcCCCceEEEEEEEecccCCccEEEEeeEEEEEecc
Q 003104 733 HLWLAYLPRETF----------KT---QCFRGLTKASFNIFYMGEEFRNASVKMCGVVSLYMEV 783 (847)
Q Consensus 733 h~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~vk~cGv~lv~~~~ 783 (847)
|+|+.|....++ .+ ....++++++++|.+.... ..++||+||||++|+++
T Consensus 1036 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~cg~~~~~~~~ 1098 (1153)
T PLN03210 1036 HVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN-SQLKLKGCGIRLSEDDS 1098 (1153)
T ss_pred eeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCC-CCeEEEeeeEEEeccCC
Confidence 555554442211 11 1122456667888664422 34699999999999664
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-52 Score=490.70 Aligned_cols=556 Identities=25% Similarity=0.296 Sum_probs=328.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH--H-HhccCCceeEEEecccccccCChHHHHHHHHHHHhc-CCC
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--T-LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-ERD 77 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~--~-i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~-~~~ 77 (847)
+++...|..+.. ++||||||||+||||||+.||| . +..+||..+||. ||+.+....+|++|+..+.. +..
T Consensus 168 ~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 168 EKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcc
Confidence 445555554433 9999999999999999999999 3 789999999999 88899999999999998533 112
Q ss_pred ccccchhhhHHHHHHHhcCCcEEEEEcCCCCHHHHHHHhcCC--------------------------------------
Q 003104 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNH-------------------------------------- 119 (847)
Q Consensus 78 ~~~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~~~l~~L~~~~-------------------------------------- 119 (847)
....+.++.+..|.+.|++|||+|||||||+...|+.+....
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 222234688999999999999999999999999988875221
Q ss_pred Cee------------------------------------EecccccC-CCHHHHHHHHHHHhcC-----C--ccccceee
Q 003104 120 DWF------------------------------------VLGSFLCG-RSVEEWKSALNRLQEA-----P--NEKVLKVL 155 (847)
Q Consensus 120 ~w~------------------------------------~lgs~L~~-~~~~~W~~~l~~L~~~-----~--~~~i~~~L 155 (847)
+|. ++|..|+. ++.+||+.+.+.+... + .+.|..+|
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 222 89999999 5778999999988765 2 35688999
Q ss_pred eeeccCCChhhHHHhheeeeccCCCCH--HHHHHHHhhCCCCh------------hhhHHHHhhcCceeEeC-----CeE
Q 003104 156 RISYDGLDRRDKEIFLDIACFFKGKDE--DRVRKKLDSCGFNS------------DIGIRELLDKSLITIVN-----NKL 216 (847)
Q Consensus 156 ~~SYd~L~~~~k~~FL~~a~F~~~~~~--~~l~~~~~~~g~~~------------~~~l~~L~~k~Li~~~~-----~~~ 216 (847)
++|||.||++.|.||||||.||+|+++ +.++.+|+|+||+. ..++.+|+.++|+...+ .++
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 999999998899999999999999964 77999999999874 34599999999999875 579
Q ss_pred eehHHHHHHHHHHhhhcCCCCCCCeeeccCchhHHHHHhcCcCCCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcc
Q 003104 217 WMHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLY 296 (847)
Q Consensus 217 ~mHdll~~~~~~i~~~e~~~~p~~~~rL~~~~d~~~vl~~~~~~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~ 296 (847)
+|||++||||.+++.+.+......+-.- .....+ ..+......++++++..+....+... .++++|++|-+.+|.
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~--~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSD--GVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNS 556 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEEC--CcCccc-cccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecc
Confidence 9999999999999995442222111100 000000 11222345677777766644333321 233467777776653
Q ss_pred --cC---CCccccCCCcceEEecC-CCCCCCCCCC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC
Q 003104 297 --SS---GNLEYLSNNLRYLKWHE-YPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD 369 (847)
Q Consensus 297 --l~---~~~~~~~~~L~~L~~~~-~~~~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~ 369 (847)
+. +.+....+.|+.|++++ ..+..||..+ .+-+|++|+++++.++.+|.++++|.+|.+|++.++..+..+|.
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence 11 11122233444444442 2334555555 45555555555555555555555555555555555544444444
Q ss_pred CC-CCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcc
Q 003104 370 FT-GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECL 448 (847)
Q Consensus 370 ~~-~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L 448 (847)
+. .+++|++|.+..-. . ......-..+.++.+|+.|....++. .+-+.+..++.|
T Consensus 637 i~~~L~~Lr~L~l~~s~-~---------------------~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L 692 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSA-L---------------------SNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL 692 (889)
T ss_pred hhhhcccccEEEeeccc-c---------------------ccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence 22 25555555554321 0 00011111223444444444433222 111122222222
Q ss_pred c----EEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchh------hccc-ccCCCCCCCccccCCC-CCCCC
Q 003104 449 E----ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNF------FLSL-LLPNKNSDSMCLSFPR-FTGLS 516 (847)
Q Consensus 449 ~----~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~------l~~l-~l~~~~~~~~~~~l~~-l~~l~ 516 (847)
. .+.+.++.....+.++..+.+|+.|.+.+|............ .+.+ .....++.. ...+. ....+
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~~f~~ 770 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWLLFAP 770 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchhhccC
Confidence 2 233333444455666667777777777777643211100000 0000 000001100 01111 23557
Q ss_pred CCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCc
Q 003104 517 SLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCT 596 (847)
Q Consensus 517 ~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~ 596 (847)
+|+.|.+..|...++.+|. ...+..++.+.+..+.+..++ ...++.+.+.+...|--.+.++.+.+..||
T Consensus 771 ~L~~l~l~~~~~~e~~i~~-~k~~~~l~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p 840 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPK-LKALLELKELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECP 840 (889)
T ss_pred cccEEEEecccccccCCCH-HHHhhhcccEEecccccccce---------eeecCCCCceeEecccCccchhheehhcCc
Confidence 8888888888776644443 333444444444444333221 111222222222222222447777777788
Q ss_pred cccccccc
Q 003104 597 SLETISAF 604 (847)
Q Consensus 597 ~L~~l~~~ 604 (847)
+|..+|..
T Consensus 841 ~l~~~P~~ 848 (889)
T KOG4658|consen 841 KLGKLPLL 848 (889)
T ss_pred ccccCccc
Confidence 88877764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.2e-31 Score=328.05 Aligned_cols=401 Identities=20% Similarity=0.190 Sum_probs=306.3
Q ss_pred CCCCCeeeccCchhHHHHHhcCc--CCCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc----cCCCcc
Q 003104 236 DKPGKWSRLWLYKDVYHVLSKYM--GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY----LSNNLR 309 (847)
Q Consensus 236 ~~p~~~~rL~~~~d~~~vl~~~~--~~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~----~~~~L~ 309 (847)
.+|.++.+.|...+.+-...... ...+++.+.+..+......+.+|..+++|++|++++|.+.+.++. ...+|+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 45666677786543211111111 245788898887766656678899999999999999998876553 457999
Q ss_pred eEEecCCCCCCCCCCCCCCCcEEEEccCCCcc-ccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccc
Q 003104 310 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 387 (847)
Q Consensus 310 ~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l 387 (847)
+|++.+|.+........+++|++|++++|.+. .+|..++++++|++|+|++|......|. ++++++|++|+|++|...
T Consensus 122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 99999998864333346789999999999997 7788899999999999999988877775 899999999999999988
Q ss_pred ccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-ccCcccc
Q 003104 388 LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIV 466 (847)
Q Consensus 388 ~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~ 466 (847)
..+|..++++++|++|++++|...+.+|..++++++|++|++++|...+.+|..++++++|+.|++++|.+. .+|.++.
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 899999999999999999999988899999999999999999999988899999999999999999999987 7888999
Q ss_pred CCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCE
Q 003104 467 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 545 (847)
Q Consensus 467 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~ 545 (847)
++++|+.|++++|......+.....+..+.......+......|. +..+++|+.|++++|.+. +.+|..++.+++|+.
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTV 360 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcE
Confidence 999999999999976544454444555553332233333334555 788889999999998864 578888888899999
Q ss_pred EECcCCCCc-ccchhhhcCCCCCEEeecCCCCCccCCCC---CCCcceeeccCC-------------ccccccccccccC
Q 003104 546 IDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPEL---PPEIVFVGAEDC-------------TSLETISAFAKLS 608 (847)
Q Consensus 546 L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~c-------------~~L~~l~~~~~~~ 608 (847)
|++++|+++ .+|.++..+++|+.|++++|+....+|.. .++|+.|++++| ++|+.+....|.
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~- 439 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN- 439 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-
Confidence 999999887 77888888888888888888766666642 256666666554 233333333321
Q ss_pred CCCCceEEEccCCCcchhhhhhhhHHHHHH
Q 003104 609 RSPNIALNFLNCFKLVEDQVSKDNLAVTLM 638 (847)
Q Consensus 609 ~~~~~~~~~~nc~~L~~l~~~~n~~~~~~~ 638 (847)
........+.++++|+.+++++|.+.+.++
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecC
Confidence 111222334567777777777776654443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.1e-30 Score=319.07 Aligned_cols=223 Identities=21% Similarity=0.258 Sum_probs=149.6
Q ss_pred CCcEEEEEecCCCcc-ccCchhhcCCCCCcEEEEcCcccCCCccc-cCCCcceEEecCCCCC-CCCCCC-CCCCcEEEEc
Q 003104 260 TDAVEAIIVDVPEMT-ELEAKSFSTMSNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFN-SLPVSF-RPEKLFKLNL 335 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~-~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~-~~~~L~~L~~~~~~~~-~lp~~~-~~~~L~~L~L 335 (847)
...++.+.+..+... .++...|..+++|++|++++|.+.+.++. .+.+|++|++.+|.+. .+|..+ .+.+|++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 456777777766443 45666677888888888888877765442 4567777777777764 556555 6777777777
Q ss_pred cCCCcc-ccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccc
Q 003104 336 CNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 413 (847)
Q Consensus 336 ~~~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~ 413 (847)
++|.+. .+|..+.++++|++|+|++|.....+|. ++++++|++|+|++|.....+|..++++++|++|++++|...+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 777765 5666677777777777777766655553 66677777777777766666676777777777777777666666
Q ss_pred cCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-ccCccccCCCCCCEEEeCCCCCC
Q 003104 414 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 414 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~ 482 (847)
+|..++++++|++|++++|...+.+|..+.++++|+.|++++|.+. .+|..+.++++|+.|++++|...
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 6666666666666666666666666666666666666666666655 45555566666666666655543
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=6.7e-26 Score=243.74 Aligned_cols=193 Identities=31% Similarity=0.473 Sum_probs=152.0
Q ss_pred ChHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH--HhccCCceeEEEecccccccCChHHHHHHHHHHHhcCC-C
Q 003104 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-D 77 (847)
Q Consensus 1 ~~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~--i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~-~ 77 (847)
+++|.+.|....+++++|+|+||||+||||||+++|++ ++.+|+.++|+. ++.......++++++.++.... +
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccccccc
Confidence 46888888887799999999999999999999999997 899999999998 5555566888999988854331 1
Q ss_pred c-cccchhhhHHHHHHHhcCCcEEEEEcCCCCHHHHHHHhcCCC------------------------ee----------
Q 003104 78 L-IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHD------------------------WF---------- 122 (847)
Q Consensus 78 ~-~~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~~~l~~L~~~~~------------------------w~---------- 122 (847)
. ...+..+....+++.|+++|+||||||||+..+|+.+..... +.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 345667789999999999999999999999999866642211 00
Q ss_pred ----------------------------------------EecccccC-CCHHHHHHHHHHHhcCC------ccccceee
Q 003104 123 ----------------------------------------VLGSFLCG-RSVEEWKSALNRLQEAP------NEKVLKVL 155 (847)
Q Consensus 123 ----------------------------------------~lgs~L~~-~~~~~W~~~l~~L~~~~------~~~i~~~L 155 (847)
++|++|+. .+.++|+.+++.+.... ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67888855 36789999998876443 35688999
Q ss_pred eeeccCCChhhHHHhheeeeccCCCC--HHHHHHHHhhCCCChh
Q 003104 156 RISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSD 197 (847)
Q Consensus 156 ~~SYd~L~~~~k~~FL~~a~F~~~~~--~~~l~~~~~~~g~~~~ 197 (847)
.+||+.||++.|+||+|+|+||.++. ++.++++|.++||+..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999986 7889999999998764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=9.3e-26 Score=242.68 Aligned_cols=339 Identities=21% Similarity=0.288 Sum_probs=257.5
Q ss_pred cEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCC---CccccCCCcceEEecCCCCC--CCCCCC-CCCCcEEEEc
Q 003104 262 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSG---NLEYLSNNLRYLKWHEYPFN--SLPVSF-RPEKLFKLNL 335 (847)
Q Consensus 262 ~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~---~~~~~~~~L~~L~~~~~~~~--~lp~~~-~~~~L~~L~L 335 (847)
.++-+.++......+ ++.++.+.+|..|.+..|++.. .+.. ++.||.+....|+++ .+|..+ .++.|.+|||
T Consensus 33 ~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vhGELs~-Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVHGELSD-LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhhhhhcc-chhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 344444444333332 3556667777777777776653 3333 347888888888774 577664 9999999999
Q ss_pred cCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCcccc
Q 003104 336 CNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 414 (847)
Q Consensus 336 ~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~l 414 (847)
++|++++.|.++..-.++-+|+||+|++.+.+.. |-+++.|-.|+|++| .+..+|+.+..|..|++|.|++|...---
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 9999999999999999999999999965544333 788999999999985 58889999999999999999998743221
Q ss_pred CccccCCCCccEEEecCccC-CCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhc
Q 003104 415 PKNVCLMKSLKILCLCGCLK-LEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFL 493 (847)
Q Consensus 415 p~~i~~l~~L~~L~Ls~c~~-l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 493 (847)
-..+..+++|++|.+++... +..+|..+..+.+|..++++.|.+..+|..+.++++|+.|+|++|..... ........
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~ 268 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWE 268 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-eccHHHHh
Confidence 12233578899999987554 35789999999999999999999999999999999999999999975431 22222223
Q ss_pred ccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeec
Q 003104 494 SLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLE 572 (847)
Q Consensus 494 ~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 572 (847)
.++......+.+ ..+|. +..++.|+.|.+.+|.+.-+.+|+.++.+.+|+.+..++|++.-+|.++..|++|+.|.|+
T Consensus 269 ~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 269 NLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 332222222222 44666 8888999999999998877789999999999999999999999999999999999999999
Q ss_pred CCCCCccCCC---CCCCcceeeccCCccccccccccc
Q 003104 573 KCRNLKSLPE---LPPEIVFVGAEDCTSLETISAFAK 606 (847)
Q Consensus 573 ~c~~L~~lp~---lp~sL~~L~i~~c~~L~~l~~~~~ 606 (847)
+|+ |-.+|+ +-+.|+.|++++.++|..=+.+..
T Consensus 348 ~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 348 HNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred ccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 885 555776 448899999999998887666543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-24 Score=232.22 Aligned_cols=222 Identities=17% Similarity=0.096 Sum_probs=151.2
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCc--cccCCCcceEEecCCCCCCCCCCC--CCCCcEEEEcc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL--EYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLC 336 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~--~~~~~~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~ 336 (847)
..++.+.+..+....+....|.++++|+.+++.+|.++..+ ......|+.|.+.+|-+.++.+.- .++.|+.|||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 45566777777778888888888888888888888777643 234456788888888777776553 56677888888
Q ss_pred CCCccccccc-cccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCcccc
Q 003104 337 NSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 414 (847)
Q Consensus 337 ~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~l 414 (847)
.|.|..+|.. +..-.++++|+|++|.+...-. .|.++.+|.+|.|+.|....--+.++.+|++|+.|+|..|..-..-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 8888877643 5566778888888877665443 3777778888888876654444456666888888888776532221
Q ss_pred CccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccC-ccccCCCCCCEEEeCCCCCC
Q 003104 415 PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 415 p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~ 482 (847)
--.+..+++|+.|.+..|.....-...+-.|.++++|+|..|.++.+- .++..|++|+.|+++.|...
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 233566777777777766554433444566677777777777777554 34566777777777776543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=3.1e-25 Score=238.63 Aligned_cols=299 Identities=21% Similarity=0.298 Sum_probs=229.2
Q ss_pred hcCcCCCcEEEEEecCC--CccccCchhhcCCCCCcEEEEcCcccCCCcccc--CCCcceEEecCCCCCCCCCCC--CCC
Q 003104 255 SKYMGTDAVEAIIVDVP--EMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL--SNNLRYLKWHEYPFNSLPVSF--RPE 328 (847)
Q Consensus 255 ~~~~~~~~v~~l~l~~~--~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~--~~~L~~L~~~~~~~~~lp~~~--~~~ 328 (847)
.+....+.+|++.+..+ +...+++ .+-+|..|.+|+++.|++...+..+ .+++-.|++++|++.++|... ++.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCc-hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 33344455555555554 2233333 4446788888888888877654433 356777888888888888764 777
Q ss_pred CcEEEEccCCCccccccccccCcCCCEEEcCCCCCCC-CCCCCCCCCcCcEeeccCcc-ccccccccccCCCCCcEEecc
Q 003104 329 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI-RTPDFTGVPNLERLNLEGCT-RLLEVHQSVGTLKRLILLNLK 406 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~-~~p~~~~l~~L~~L~L~~c~-~l~~lp~~i~~L~~L~~L~L~ 406 (847)
.|-.|||++|+++.+|+.+..|.+|++|+|++|.... .+..+..+++|++|.+++.. -+..+|.++..|.+|..+|++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 8888888888888888888888888888888875432 12235566777888887743 345678888888888888888
Q ss_pred CCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCc
Q 003104 407 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKI 486 (847)
Q Consensus 407 ~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~ 486 (847)
. +.+..+|+.+.++++|+.|+||+|.. ..+....+...+|++|+++.|+++.+|..+.++++|+.|.+.+|+...
T Consensus 231 ~-N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--- 305 (1255)
T KOG0444|consen 231 E-NNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--- 305 (1255)
T ss_pred c-cCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc---
Confidence 6 45777888888888888888888654 445555666777888888888888888888888888888888877554
Q ss_pred CcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCC
Q 003104 487 LSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLK 565 (847)
Q Consensus 487 ~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~ 565 (847)
..+|+ ++.+.+|+.+..++|.+- -+|+.++.+..|+.|.|+.|.+.++|..|.-|+.
T Consensus 306 --------------------eGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 306 --------------------EGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPD 363 (1255)
T ss_pred --------------------cCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCC
Confidence 45777 999999999999999863 7899999999999999999999999999999999
Q ss_pred CCEEeecCCCCCccCC
Q 003104 566 LKILCLEKCRNLKSLP 581 (847)
Q Consensus 566 L~~L~L~~c~~L~~lp 581 (847)
|+.|++..|++|..-|
T Consensus 364 l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPP 379 (1255)
T ss_pred cceeeccCCcCccCCC
Confidence 9999999999998544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.1e-21 Score=244.20 Aligned_cols=317 Identities=23% Similarity=0.342 Sum_probs=236.3
Q ss_pred cCCCcceEEecCCCC-------CCCCCCC--CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCC
Q 003104 304 LSNNLRYLKWHEYPF-------NSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVP 374 (847)
Q Consensus 304 ~~~~L~~L~~~~~~~-------~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~ 374 (847)
-+.+|++|.+..... -.+|..+ .+.+|+.|++.++.++.+|..+ .+.+|+.|++++|++......+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 356899998865532 2466666 4578999999999999999887 57999999999997655445688999
Q ss_pred cCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEec
Q 003104 375 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 454 (847)
Q Consensus 375 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 454 (847)
+|+.|+|++|..+..+| .++.+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999998888887 58899999999999999999999999999999999999999999999876 78999999999
Q ss_pred Cccc-cccCccccCCCCCCEEEeCCCCCCCCCcCc--chhhcccccCCCCCCCcc---ccCCC--CCCCCCCCEEeccCC
Q 003104 455 GTAI-RQIPPSIVQLVNLKIFSLHGCKGQPPKILS--SNFFLSLLLPNKNSDSMC---LSFPR--FTGLSSLQTLDLSDC 526 (847)
Q Consensus 455 ~~~i-~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~---~~l~~--l~~l~~L~~L~Ls~~ 526 (847)
+|.. ..+|.. .++|+.|++++|.... .|.. ...+..+.+......... ..++. ...+++|+.|+|++|
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 9853 355542 4689999999987432 2221 112222211110000000 11111 234578999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEECcCC-CCcccchhhhcCCCCCEEeecCCCCCccCCCCCC--------------------
Q 003104 527 NLLEGAIPSDIGSLFSLEAIDLSGN-NFFSLPSSINQLLKLKILCLEKCRNLKSLPELPP-------------------- 585 (847)
Q Consensus 527 ~l~~~~lp~~l~~l~sL~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~-------------------- 585 (847)
.... .+|..++++++|+.|+|++| ++..+|..+ ++++|+.|++++|..++.+|..++
T Consensus 789 ~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~ 866 (1153)
T PLN03210 789 PSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE 866 (1153)
T ss_pred CCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh
Confidence 7654 78999999999999999987 577888776 789999999999998888776544
Q ss_pred ---CcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhh
Q 003104 586 ---EIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSK 630 (847)
Q Consensus 586 ---sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~ 630 (847)
+|+.|++.+|++|+.++.... .......+.|.+|++|+.+.+..
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~-~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNIS-KLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccc-cccCCCeeecCCCcccccccCCC
Confidence 455566666777766655322 23344567788888887665543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-23 Score=224.68 Aligned_cols=362 Identities=17% Similarity=0.142 Sum_probs=248.2
Q ss_pred EEEEecCCCccccCchhhcCC--CCCcEEEEcCcccCCCc-c--ccCCCcceEEecCCCCCCCCCCC-CCCCcEEEEccC
Q 003104 264 EAIIVDVPEMTELEAKSFSTM--SNLRLLEINNLYSSGNL-E--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCN 337 (847)
Q Consensus 264 ~~l~l~~~~~~~l~~~~f~~~--~~Lr~L~l~~~~l~~~~-~--~~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~ 337 (847)
+-+..+..+...++...+... +.-+.|++++|.+...- . .-+.+|+.+.+..|.+..+|... ...+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 333333334444444444444 34456999999988742 2 34568999999999999999887 556799999999
Q ss_pred CCccccc-cccccCcCCCEEEcCCCCCCCC-CCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccC
Q 003104 338 SRIKYLW-KGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFP 415 (847)
Q Consensus 338 ~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~-~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp 415 (847)
|.|.++. +.++.++.|+.||||.|.+... .|.|..-.++++|+|++|.+...-...+.++.+|..|.|++|+. +.+|
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp 213 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLP 213 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccC
Confidence 9999885 4588899999999999865543 34588889999999999887766667888999999999999764 4555
Q ss_pred -ccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCcCcchhhc
Q 003104 416 -KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFL 493 (847)
Q Consensus 416 -~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 493 (847)
..+.+++.|+.|+|..|.....---.+.++++|+.|.+..|.|..+... +..+.++++|+|..|............+.
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 5666799999999988765433234578899999999999999987654 56789999999999986665555555555
Q ss_pred ccccCCCCCCCcc-ccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEEee
Q 003104 494 SLLLPNKNSDSMC-LSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 571 (847)
Q Consensus 494 ~l~l~~~~~~~~~-~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L 571 (847)
.|.......+.+. ........+++|+.|+|++|++.. --+..+..++.|++|+|+.|.+..+.. .+..+++|+.|+|
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 5533332222222 223336777888888888888653 334567778888888888888876643 4677888888888
Q ss_pred cCCCCCccCCCCCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhH
Q 003104 572 EKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 633 (847)
Q Consensus 572 ~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~ 633 (847)
++|..-..|.+-. --..+.++|+.+....|.. .....-.|+..+.|+.|++.+|.+
T Consensus 373 r~N~ls~~IEDaa-----~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 373 RSNELSWCIEDAA-----VAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cCCeEEEEEecch-----hhhccchhhhheeecCcee-eecchhhhccCcccceecCCCCcc
Confidence 8876444443211 0012334444444333311 111122356666666666666644
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.3e-23 Score=216.71 Aligned_cols=347 Identities=22% Similarity=0.264 Sum_probs=209.5
Q ss_pred hhcCCCCCcEEEEcCcccCCCccccC--CCcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCccccccccccCcCCCEE
Q 003104 280 SFSTMSNLRLLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFM 356 (847)
Q Consensus 280 ~f~~~~~Lr~L~l~~~~l~~~~~~~~--~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 356 (847)
+.....+|+.|+++.|.+....+... -.+..|+-.+|.+.++|..+ .+.+|..|++.+|+++.+|+..-+++.|++|
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 34444555555555554443332222 13444455555556666555 5556666666666666665554456666666
Q ss_pred EcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCcccc-CCCCccEEEecCccCC
Q 003104 357 NLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC-LMKSLKILCLCGCLKL 435 (847)
Q Consensus 357 ~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l 435 (847)
|..+|-..+.+|+++++.+|+.|+|..|+ +..+| +|+.+..|..|.++.| .++.+|...+ ++.+|.+|++.+| ++
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-kl 264 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KL 264 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-cc
Confidence 66666555555556666666666666643 44555 6666666666666653 3566666555 7888888888885 46
Q ss_pred CcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCC--C---cCcchhhccccc-----CCCCCCC-
Q 003104 436 EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPP--K---ILSSNFFLSLLL-----PNKNSDS- 504 (847)
Q Consensus 436 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~--~---~~~~~~l~~l~l-----~~~~~~~- 504 (847)
+++|..+..+++|++||+++|.|+.+|.+++++ .|+.|-+.||....- . ......++.+.. ..+....
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 778888888888888899888888888888888 888888888862110 0 001111111110 0000000
Q ss_pred -------ccccCCCCCCCCCCCE--------------------------EeccCCCCCC---------------------
Q 003104 505 -------MCLSFPRFTGLSSLQT--------------------------LDLSDCNLLE--------------------- 530 (847)
Q Consensus 505 -------~~~~l~~l~~l~~L~~--------------------------L~Ls~~~l~~--------------------- 530 (847)
....+|......+.+. .+++.|++.+
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 0111222222223333 3344443221
Q ss_pred -CCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCC-------------CCcceeec---c
Q 003104 531 -GAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP-------------PEIVFVGA---E 593 (847)
Q Consensus 531 -~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp-------------~sL~~L~i---~ 593 (847)
+.+|..++.+++|..|+|++|-+..+|..++.+..|+.|++++| ..+.+|+.- -.+..++. .
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 24556667889999999999999999999999999999999999 445555311 11222222 3
Q ss_pred CCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 594 DCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 594 ~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
++.+|.+++...|-.. ..+-.+.||.+|+.+++.+|.+.
T Consensus 503 nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 5667777777554221 23445899999999999999876
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=3.2e-22 Score=206.46 Aligned_cols=259 Identities=29% Similarity=0.330 Sum_probs=197.9
Q ss_pred CCCcEEEEcCcccCCCccc--cCCCcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCC
Q 003104 285 SNLRLLEINNLYSSGNLEY--LSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHS 361 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~--~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~ 361 (847)
..|+.|.++.|.+....+. ....|..|...++.+..+|+.+ .+..++.|+.++|++.++|+.+..+.+|+.++.++|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 4455566666655432221 2235666777777777777766 777788888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcc
Q 003104 362 CNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQD 441 (847)
Q Consensus 362 ~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 441 (847)
.....+++++.+..|+.|+..+|. +..+|.+++++.+|..|++.+|+ +..+|+..-+++.|+.|+...| .++.+|+.
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~ 201 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPE 201 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChh
Confidence 777777778888888888877654 56677788888888888888865 4444443335888888887663 46778888
Q ss_pred ccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC--CCCCCCCC
Q 003104 442 LGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR--FTGLSSLQ 519 (847)
Q Consensus 442 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~L~ 519 (847)
++.|.+|+.|++..|.+..+| .|..+..|+.|.+..|.... +|. ...+++|.
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-------------------------lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-------------------------LPAEHLKHLNSLL 255 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-------------------------hHHHHhcccccce
Confidence 888888888888888888887 67777778877777765332 444 66889999
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
.|||.+|++. +.|..++-+.+|++||+|+|.++.+|.+++++ .|+.|.+.+|+
T Consensus 256 vLDLRdNklk--e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRDNKLK--EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeccccccc--cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 9999999987 69999999999999999999999999999999 99999999997
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=2.9e-21 Score=218.39 Aligned_cols=349 Identities=22% Similarity=0.229 Sum_probs=234.3
Q ss_pred EEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc--ccCCCcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCccc
Q 003104 266 IIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKY 342 (847)
Q Consensus 266 l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~--~~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~ 342 (847)
+.+..+.....+.++..+.-+|+.|++++|++..-+. .....|+.|.++.+-+.++|... .+.+|++|+|.+|.+..
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~ 105 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS 105 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc
Confidence 3333333344445666677779999999998875433 23458999999999999999777 89999999999999999
Q ss_pred cccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc-------------------cccccccccccCCCCCcEE
Q 003104 343 LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC-------------------TRLLEVHQSVGTLKRLILL 403 (847)
Q Consensus 343 l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c-------------------~~l~~lp~~i~~L~~L~~L 403 (847)
+|.++..+.+|++|++++|++...++-+..+..++.+..++| .....++..+.+++. .|
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--ee
Confidence 999999999999999999987766554555555544444444 333444444444444 35
Q ss_pred eccCCCCc----------cccCcc-----------------------------ccCCCCccEEEecCccCCCcCCccccC
Q 003104 404 NLKDCRNL----------VSFPKN-----------------------------VCLMKSLKILCLCGCLKLEKLPQDLGE 444 (847)
Q Consensus 404 ~L~~c~~l----------~~lp~~-----------------------------i~~l~~L~~L~Ls~c~~l~~lp~~l~~ 444 (847)
+|++|... +.+--. -....+|++++++.+. ...+|++++.
T Consensus 184 dLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi~~ 262 (1081)
T KOG0618|consen 184 DLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWIGA 262 (1081)
T ss_pred ecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHHHh
Confidence 55554432 100000 0013456666666643 4456677777
Q ss_pred CCcccEEEecCccccc-----------------------cCccccCCCCCCEEEeCCCCCCCCCcCcchhh---------
Q 003104 445 VECLEELDVGGTAIRQ-----------------------IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFF--------- 492 (847)
Q Consensus 445 l~~L~~L~L~~~~i~~-----------------------lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l--------- 492 (847)
+.+|+.+.+..|.++. +|.....++.|++|+|..|.............
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 7777777777665544 45555567788888888776432211111000
Q ss_pred ----------------ccc-ccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCc-ccCCCCCCCEEECcCCCCc
Q 003104 493 ----------------LSL-LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFF 554 (847)
Q Consensus 493 ----------------~~l-~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~sL~~L~Ls~n~l~ 554 (847)
..+ .+...++......+|.+.++.+|+.|+|++|.+. .+|. .+.+++.|+.|+||||+++
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh
Confidence 000 1112223333355777889999999999999865 5776 4678999999999999999
Q ss_pred ccchhhhcCCCCCEEeecCCCCCccCCCCC--CCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhh
Q 003104 555 SLPSSINQLLKLKILCLEKCRNLKSLPELP--PEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 632 (847)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~ 632 (847)
.+|.++.+++.|++|...+| .+.++|++. +.|+.+++ +|..|+.+....... .++|+.+|+++|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p-----------~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALP-----------SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEec-ccchhhhhhhhhhCC-----------CcccceeeccCCc
Confidence 99999999999999998887 466788765 88888888 677777776654311 1666666766664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=1.9e-17 Score=194.03 Aligned_cols=259 Identities=21% Similarity=0.207 Sum_probs=143.8
Q ss_pred eEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccc
Q 003104 310 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE 389 (847)
Q Consensus 310 ~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~ 389 (847)
.|++.++.+.++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|++. .+|.+ .++|++|++++|. +..
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTH 276 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhh
Confidence 34444444445554432 2455555555555555532 355566666555333 33322 3456666666553 333
Q ss_pred ccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCC
Q 003104 390 VHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLV 469 (847)
Q Consensus 390 lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~ 469 (847)
+|.. ..+|+.|++++|. +..+|. .+++|+.|++++|... .+|... .+|+.|++++|.++.+|.. ..
T Consensus 277 Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~ 342 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTSLPTL---PS 342 (788)
T ss_pred hhhc---hhhcCEEECcCCc-cccccc---cccccceeECCCCccc-cCCCCc---ccccccccccCcccccccc---cc
Confidence 4332 2345566666653 444554 2356666666665433 344322 3466666777776666642 24
Q ss_pred CCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECc
Q 003104 470 NLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLS 549 (847)
Q Consensus 470 ~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls 549 (847)
+|+.|++++|.... +|.+ .++|+.|++++|.+. .+|.. .++|+.|+|+
T Consensus 343 ~Lq~LdLS~N~Ls~-------------------------LP~l--p~~L~~L~Ls~N~L~--~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 343 GLQELSVSDNQLAS-------------------------LPTL--PSELYKLWAYNNRLT--SLPAL---PSGLKELIVS 390 (788)
T ss_pred ccceEecCCCccCC-------------------------CCCC--Ccccceehhhccccc--cCccc---ccccceEEec
Confidence 66777777665321 2221 245666777777654 35543 2467777777
Q ss_pred CCCCcccchhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhh
Q 003104 550 GNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVS 629 (847)
Q Consensus 550 ~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~ 629 (847)
+|+++.+|.. .++|+.|++++|+ ++.+|.+|.+|+.|+++++ .|++++. .+.++++|..++++
T Consensus 391 ~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~------------sl~~L~~L~~LdLs 453 (788)
T PRK15387 391 GNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPE------------SLIHLSSETTVNLE 453 (788)
T ss_pred CCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccCh------------HHhhccCCCeEECC
Confidence 7777777643 3567777777774 5667776666666666442 2443332 25667788888888
Q ss_pred hhhHHHHHHH
Q 003104 630 KDNLAVTLMK 639 (847)
Q Consensus 630 ~n~~~~~~~~ 639 (847)
+|.+.+..+.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 8877755443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=6.7e-17 Score=189.49 Aligned_cols=256 Identities=21% Similarity=0.196 Sum_probs=191.8
Q ss_pred EEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccc
Q 003104 265 AIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW 344 (847)
Q Consensus 265 ~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~ 344 (847)
.+.+..+....++.. +. ++|+.|.+.+|+++. ++..+.+|++|++.+|.++++|.. +++|+.|++++|.++.+|
T Consensus 205 ~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 205 VLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLP 278 (788)
T ss_pred EEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhh
Confidence 345555555555542 32 478999999998886 556678999999999999999864 568999999999999887
Q ss_pred cccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCc
Q 003104 345 KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSL 424 (847)
Q Consensus 345 ~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L 424 (847)
.. ..+|+.|++++|++. .+|. ..++|+.|++++|. +..+|... .+|+.|++++|. +..+|. ...+|
T Consensus 279 ~l---p~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~---lp~~L 344 (788)
T PRK15387 279 AL---PSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQ-LTSLPT---LPSGL 344 (788)
T ss_pred hc---hhhcCEEECcCCccc-cccc--cccccceeECCCCc-cccCCCCc---ccccccccccCc-cccccc---ccccc
Confidence 63 357888999998654 4454 25789999999975 44565432 357778888865 455775 23589
Q ss_pred cEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCC
Q 003104 425 KILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDS 504 (847)
Q Consensus 425 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 504 (847)
++|++++|... .+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|....
T Consensus 345 q~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~--------------------- 396 (788)
T PRK15387 345 QELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS--------------------- 396 (788)
T ss_pred ceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC---------------------
Confidence 99999987644 56653 35688889999999988864 3578999998886432
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCcc
Q 003104 505 MCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKS 579 (847)
Q Consensus 505 ~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~ 579 (847)
+|.. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++.+|.++.++++|+.|+|++|+.-..
T Consensus 397 ----LP~l--~s~L~~LdLS~N~Ls--sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 397 ----LPVL--PSELKELMVSGNRLT--SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ----CCCc--ccCCCEEEccCCcCC--CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 3322 357999999999976 57753 3578899999999999999999999999999999975443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.9e-17 Score=192.76 Aligned_cols=244 Identities=19% Similarity=0.263 Sum_probs=169.8
Q ss_pred CCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCC
Q 003104 285 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 364 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l 364 (847)
.+...|+++++.++..+..++..|+.|++.+|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 345677887777776555567788888888888888887654 478888888888888876653 47888888888655
Q ss_pred CCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcccc
Q 003104 365 IRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG 443 (847)
Q Consensus 365 ~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 443 (847)
.+|. +. .+|++|++++|. +..+|..+. ++|+.|++++|. +..+|..+ .++|+.|++++|... .+|..+
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l- 323 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNSLT-ALPETL- 323 (754)
T ss_pred -cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCccc-cCCccc-
Confidence 4443 32 478888888764 446776554 478888888864 45566544 246888888876644 455443
Q ss_pred CCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEec
Q 003104 444 EVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDL 523 (847)
Q Consensus 444 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~L 523 (847)
.++|+.|++++|.++.+|..+. ++|+.|++++|.... +|. .-.++|+.|+|
T Consensus 324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~-------------------------LP~-~lp~~L~~LdL 374 (754)
T PRK15370 324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV-------------------------LPE-TLPPTITTLDV 374 (754)
T ss_pred -cccceeccccCCccccCChhhc--CcccEEECCCCCCCc-------------------------CCh-hhcCCcCEEEC
Confidence 2578888888888888877653 678888888875321 222 01257888888
Q ss_pred cCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhh----hcCCCCCEEeecCCC
Q 003104 524 SDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI----NQLLKLKILCLEKCR 575 (847)
Q Consensus 524 s~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L~~c~ 575 (847)
++|++. .+|..+. .+|+.|++++|+++.+|.++ ..++++..|+|.+|+
T Consensus 375 s~N~Lt--~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRNALT--NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCcCC--CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 888865 4666543 36888888888888777654 345777888888886
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=2.5e-16 Score=185.98 Aligned_cols=228 Identities=21% Similarity=0.332 Sum_probs=176.5
Q ss_pred CCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccC
Q 003104 305 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEG 383 (847)
Q Consensus 305 ~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~ 383 (847)
.++...|++.++.++++|..+ +++|+.|++++|+++.+|..+. .+|++|++++|.+. .+|. + .++|+.|+|++
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSI 250 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcC
Confidence 346788999999999999876 4689999999999999998764 59999999998755 4553 3 35899999999
Q ss_pred ccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc
Q 003104 384 CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP 463 (847)
Q Consensus 384 c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~ 463 (847)
|.. ..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|.. ..+|..+. ++|+.|++++|.++.+|.
T Consensus 251 N~L-~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 251 NRI-TELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred Ccc-CcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccccCCc
Confidence 864 47787764 589999999764 557887653 5899999999864 45665543 478999999999998887
Q ss_pred cccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCC
Q 003104 464 SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSL 543 (847)
Q Consensus 464 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL 543 (847)
.+. ++|+.|++++|.... +|. .-+++|+.|+|++|++. .+|..+ .++|
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt~-------------------------LP~-~l~~sL~~L~Ls~N~L~--~LP~~l--p~~L 369 (754)
T PRK15370 322 TLP--PGLKTLEAGENALTS-------------------------LPA-SLPPELQVLDVSKNQIT--VLPETL--PPTI 369 (754)
T ss_pred ccc--ccceeccccCCcccc-------------------------CCh-hhcCcccEEECCCCCCC--cCChhh--cCCc
Confidence 653 689999998886322 222 01268999999999875 577655 3689
Q ss_pred CEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC
Q 003104 544 EAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 544 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 582 (847)
+.|+|++|+++.+|..+.. +|+.|++++|+ +..+|+
T Consensus 370 ~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 370 TTLDVSRNALTNLPENLPA--ALQIMQASRNN-LVRLPE 405 (754)
T ss_pred CEEECCCCcCCCCCHhHHH--HHHHHhhccCC-cccCch
Confidence 9999999999999987653 68999999985 556665
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=5e-18 Score=192.42 Aligned_cols=199 Identities=22% Similarity=0.209 Sum_probs=126.5
Q ss_pred hhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcC
Q 003104 280 SFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLS 359 (847)
Q Consensus 280 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~ 359 (847)
.+..+.+|+.+.+..|++..- ...-.+|+.|..+.|++..+-..+.+.+|+++++++|++..+|+.+..+.+|+.++..
T Consensus 194 dls~~~~l~~l~c~rn~ls~l-~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSEL-EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhccchhhhhhhhcccceE-EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 455666777777766665432 2223467777777777776666667777777777777777777777777777777777
Q ss_pred CCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccc---------------------
Q 003104 360 HSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV--------------------- 418 (847)
Q Consensus 360 ~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i--------------------- 418 (847)
+|.+...+-.+....+|+.|.+..|. +..+|+....++.|++|+|..|+ +..+|+.+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 77653322346667777777777653 56667777777777777777643 45555422
Q ss_pred -----cCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCC
Q 003104 419 -----CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 419 -----~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 481 (847)
..++.|+.|.+.+|......-+.+.++.+|+.|+|++|.+.++|++ +.++..|+.|+|+||+.
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 1234455566666655554444556666666666666666666654 35666666666666653
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=147.61 Aligned_cols=164 Identities=28% Similarity=0.443 Sum_probs=117.0
Q ss_pred ccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEE
Q 003104 348 KPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKIL 427 (847)
Q Consensus 348 ~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 427 (847)
-++.+.+.|.|++|+....+|.+..+.+|+.|++.+|. +.++|.+++.+++|+.|+++-| .+..+|.+++.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 34555555666666666666666666677777776643 6677888888888888888764 467788888888888888
Q ss_pred EecCccCCC-cCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCcc
Q 003104 428 CLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMC 506 (847)
Q Consensus 428 ~Ls~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 506 (847)
++.+|+..+ .+|..+-.|+.|+.|++++|.++-+|..++++++|+.|.+..|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-------------------------- 161 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-------------------------- 161 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc--------------------------
Confidence 888876554 56777777888888888888888887777776666666665543
Q ss_pred ccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhc
Q 003104 507 LSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 562 (847)
Q Consensus 507 ~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~ 562 (847)
++ .+|..++.++.|++|.+.+|.++-+|..+++
T Consensus 162 ---------------------ll--~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 162 ---------------------LL--SLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ---------------------hh--hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 33 4677777777777777777777777765544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=7.7e-16 Score=142.05 Aligned_cols=158 Identities=25% Similarity=0.345 Sum_probs=76.5
Q ss_pred CcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcc
Q 003104 307 NLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~ 385 (847)
..+.|.++++.+..+|..+ .+.+|++|++.+|+++++|..+..+++||.|+++-|+....+..|+.+|.|+.|||.+|.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 3444445555555555544 455555555555555555555555555555555554443333345555555555555443
Q ss_pred cc-ccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc
Q 003104 386 RL-LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 386 ~l-~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
.. ..+|..+..++.|+.|.|++|. .+.+|..++++++||.|.+..|.. -.+|..++.++.|++|++.+|.++-+|+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 22 2344444444455555554433 334444455555555555544332 23444455555555555555555544444
Q ss_pred cc
Q 003104 465 IV 466 (847)
Q Consensus 465 i~ 466 (847)
++
T Consensus 192 l~ 193 (264)
T KOG0617|consen 192 LA 193 (264)
T ss_pred hh
Confidence 43
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=4.5e-15 Score=153.98 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=151.6
Q ss_pred CCCCCCCCCCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccc-cc
Q 003104 318 FNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQ-SV 394 (847)
Q Consensus 318 ~~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~-~i 394 (847)
+..+|... +..-+.++|..|+|+.+|++ |+.+++||.|||++|.+....|+ |.++++|.+|-+.++..+..+|. .+
T Consensus 58 L~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 58 LTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 34444443 23456667777777777654 77777777777777776666665 77777777777777555666663 45
Q ss_pred cCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCc-cccCCCcccEEEecCcccc-------------c
Q 003104 395 GTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIR-------------Q 460 (847)
Q Consensus 395 ~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~-------------~ 460 (847)
+.|..|+.|.+.-|+..-.....+..+++|..|.+.+|. ...++. .+..+.+++.+.+..|.+- .
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 666666666666555443444445566666666666643 233333 4555666666666555421 1
Q ss_pred cCccccCCCCCCEEEeCCCCCCCCCcC-cchhhcccccCCCCCCCccccCCC--CCCCCCCCEEeccCCCCCCCCCCccc
Q 003104 461 IPPSIVQLVNLKIFSLHGCKGQPPKIL-SSNFFLSLLLPNKNSDSMCLSFPR--FTGLSSLQTLDLSDCNLLEGAIPSDI 537 (847)
Q Consensus 461 lp~~i~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~lp~~l 537 (847)
.|..++.........+...+.....+. ....+..+..............|. |..+++|+.|+|++|.+.. .-+.++
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aF 294 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAF 294 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhh
Confidence 111222222211111111110000000 000111111111122222234455 8999999999999999753 556789
Q ss_pred CCCCCCCEEECcCCCCcccch-hhhcCCCCCEEeecCCCCCccCC
Q 003104 538 GSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 538 ~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
..+..+++|.|..|++..+.. .+.++..|+.|+|.+|+...--|
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 999999999999999987754 46899999999999996443333
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.8e-14 Score=157.43 Aligned_cols=228 Identities=21% Similarity=0.165 Sum_probs=114.3
Q ss_pred CCcEEEEccCCCcc-----ccccccccCcCCCEEEcCCCCCCCCC-------CCCCCCCcCcEeeccCcccccccccccc
Q 003104 328 EKLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIRT-------PDFTGVPNLERLNLEGCTRLLEVHQSVG 395 (847)
Q Consensus 328 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l~~~-------p~~~~l~~L~~L~L~~c~~l~~lp~~i~ 395 (847)
.+|++|+++++.++ .++..+...++|++++++++...... ..+..+++|++|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34666666666652 34445556666777777665443100 1144456666666666655444444444
Q ss_pred CCCC---CcEEeccCCCCcc----ccCccccCC-CCccEEEecCccCCC----cCCccccCCCcccEEEecCcccc----
Q 003104 396 TLKR---LILLNLKDCRNLV----SFPKNVCLM-KSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR---- 459 (847)
Q Consensus 396 ~L~~---L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~---- 459 (847)
.+.+ |++|++++|.... .+...+..+ ++|+.|++++|...+ .++..+..+++|++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4433 6666666655431 122223344 566666666665442 22333445556666666666655
Q ss_pred -ccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCccc
Q 003104 460 -QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDI 537 (847)
Q Consensus 460 -~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l 537 (847)
.++..+..+++|+.|++++|....... ..+.. +..+++|++|++++|.+.+..+....
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGA--------------------SALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHH--------------------HHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 233334445566666666664221000 00111 34456666666666654321111000
Q ss_pred ----CCCCCCCEEECcCCCCc-----ccchhhhcCCCCCEEeecCCC
Q 003104 538 ----GSLFSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 538 ----~~l~sL~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 575 (847)
...+.|+.|++++|.++ .++..+..+++|+.+++++|.
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 12356666666666654 233344555666666666664
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-14 Score=150.64 Aligned_cols=258 Identities=21% Similarity=0.229 Sum_probs=191.6
Q ss_pred cCcccCCCccccCCCcceEEecCCCCCCCCCCC--CCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCCCCCCCCCC
Q 003104 293 NNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD 369 (847)
Q Consensus 293 ~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~~p~ 369 (847)
++-.+...+..+|.+-..+++..|.++++|... .+++|+.|||++|+|+.+ |+.|+.+..|..|-+.++..++.+|.
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344455556677888899999999999999764 899999999999999988 66799999999998888656667764
Q ss_pred --CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCc-cccCCCCccEEEecCccCC-----------
Q 003104 370 --FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK-NVCLMKSLKILCLCGCLKL----------- 435 (847)
Q Consensus 370 --~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l----------- 435 (847)
|.++..|+.|.+.-|...-.....+..|++|..|.+-+|. ...++. .+..+.+++++.+..|...
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 9999999999999888777777888999999999998854 556665 6778888999988776621
Q ss_pred -CcCCccccCCCcccEEEecCc--------------------------cccccC-ccccCCCCCCEEEeCCCCCCCCCcC
Q 003104 436 -EKLPQDLGEVECLEELDVGGT--------------------------AIRQIP-PSIVQLVNLKIFSLHGCKGQPPKIL 487 (847)
Q Consensus 436 -~~lp~~l~~l~~L~~L~L~~~--------------------------~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~ 487 (847)
...|..++......-..+.+. .....| ..|..+++|+.|++++|....
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~---- 288 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR---- 288 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch----
Confidence 122333333222222222111 111122 136778999999999987543
Q ss_pred cchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc-chhhhcCCCC
Q 003104 488 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKL 566 (847)
Q Consensus 488 ~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L 566 (847)
..-..|.+..++++|.|..|++-. .-...+.+++.|+.|+|.+|+|+.+ |..|..+.+|
T Consensus 289 -------------------i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 289 -------------------IEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred -------------------hhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 111227888999999999998642 2233577899999999999999944 7788899999
Q ss_pred CEEeecCCC
Q 003104 567 KILCLEKCR 575 (847)
Q Consensus 567 ~~L~L~~c~ 575 (847)
.+|+|-.|+
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 999998775
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.5e-14 Score=158.06 Aligned_cols=263 Identities=19% Similarity=0.166 Sum_probs=166.6
Q ss_pred hhhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCcc-------ccccccccC
Q 003104 279 KSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIK-------YLWKGIKPL 350 (847)
Q Consensus 279 ~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~-------~l~~~~~~l 350 (847)
..|..+.+|+.|+++++.++..-. ..++... ..++|+.|+++++.+. .++..+..+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~----------------~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAA----------------KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHH----------------HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 445566667777777666543100 0111111 2334555555555443 233456678
Q ss_pred cCCCEEEcCCCCCCCCCCC-CCCC---CcCcEeeccCccccc----cccccccCC-CCCcEEeccCCCCcc----ccCcc
Q 003104 351 KELKFMNLSHSCNLIRTPD-FTGV---PNLERLNLEGCTRLL----EVHQSVGTL-KRLILLNLKDCRNLV----SFPKN 417 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p~-~~~l---~~L~~L~L~~c~~l~----~lp~~i~~L-~~L~~L~L~~c~~l~----~lp~~ 417 (847)
++|+.|++++|......+. +..+ ++|++|++++|.... .+..++..+ ++|+.|++++|.... .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 8888888888876543332 3333 458888888886542 333456666 888999999887552 34444
Q ss_pred ccCCCCccEEEecCccCCC----cCCccccCCCcccEEEecCcccc-----ccCccccCCCCCCEEEeCCCCCCCCCcCc
Q 003104 418 VCLMKSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILS 488 (847)
Q Consensus 418 i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~ 488 (847)
+..+++|++|++++|...+ .++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.......
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~-- 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA-- 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH--
Confidence 5667789999999887653 23344556678999999998876 345566778999999999986321000
Q ss_pred chhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCC---CCCcccCCCCCCCEEECcCCCCccc-----chhh
Q 003104 489 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFSL-----PSSI 560 (847)
Q Consensus 489 ~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~sL~~L~Ls~n~l~~l-----p~~i 560 (847)
.. ....+ ....+.|++|++++|.+.+. .+...+..+++|+++++++|+++.- ...+
T Consensus 239 ----~~----------l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 239 ----AA----------LASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred ----HH----------HHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 00 00001 11357899999999987521 2344566678999999999999833 3344
Q ss_pred hcC-CCCCEEeecCCC
Q 003104 561 NQL-LKLKILCLEKCR 575 (847)
Q Consensus 561 ~~l-~~L~~L~L~~c~ 575 (847)
... +.|+.|++.+++
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 455 789999988875
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=5e-12 Score=152.01 Aligned_cols=210 Identities=23% Similarity=0.269 Sum_probs=104.7
Q ss_pred CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCccc
Q 003104 370 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 449 (847)
Q Consensus 370 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 449 (847)
|..+|.|+.|||++|..+.++|.+|+.|-+|++|++++ +.+..+|.++.+++.|.+|++..+..+..+|..+..|++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 44455555555555555555555555555555555554 23445555555555555555555444444444444455555
Q ss_pred EEEecCcccc---ccCccccCCCCCCEEEeCCCCCCC-CCcCcchhhcccccCCC-CCCCccccCCCCCCCCCCCEEecc
Q 003104 450 ELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKGQP-PKILSSNFFLSLLLPNK-NSDSMCLSFPRFTGLSSLQTLDLS 524 (847)
Q Consensus 450 ~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~l~l~~~-~~~~~~~~l~~l~~l~~L~~L~Ls 524 (847)
+|.+...... ..-..+.++.+|+.+......... ........+........ .........+.+..+.+|+.|.+.
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence 5555443311 111222334444444443322100 00001111111100000 112222334447888999999999
Q ss_pred CCCCCCCCCCccc-----C-CCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 525 DCNLLEGAIPSDI-----G-SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 525 ~~~l~~~~lp~~l-----~-~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
+|...+..+ ... . .+++|..+.+.++..-..+.+....++|+.|.+..|+.++.+.
T Consensus 726 ~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 726 DCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 998754211 111 1 1445555555666555666677778899999999998887654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.4e-12 Score=141.53 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=155.7
Q ss_pred EEccCCCcccccccc--ccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC
Q 003104 333 LNLCNSRIKYLWKGI--KPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 333 L~L~~~~l~~l~~~~--~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~ 410 (847)
|.|++.+++.+|.+- ..+.--...||+.|++...+.++..+..|+.|.|+.|. +..+|..+.+|..|++|||+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-
Confidence 445555555555432 22333445677777666555566677777888777743 67788999999999999999965
Q ss_pred ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcch
Q 003104 411 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSN 490 (847)
Q Consensus 411 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~ 490 (847)
+..+|..+|.|+ |+.|.+++| +++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------- 203 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------- 203 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-------
Confidence 778898898886 999999874 57889999999999999999999999999999999999888888776432
Q ss_pred hhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhh---cCCCC
Q 003104 491 FFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSIN---QLLKL 566 (847)
Q Consensus 491 ~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~---~l~~L 566 (847)
+|. +. .-.|..||+++|++. .+|..+..+..|++|-|.+|.+.+-|..|. ...=.
T Consensus 204 ------------------lp~El~-~LpLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 204 ------------------LPEELC-SLPLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred ------------------CCHHHh-CCceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 333 33 335777888888776 578888888888888888888887777663 33445
Q ss_pred CEEeecCCC
Q 003104 567 KILCLEKCR 575 (847)
Q Consensus 567 ~~L~L~~c~ 575 (847)
++|+..-|.
T Consensus 263 KyL~~qA~q 271 (722)
T KOG0532|consen 263 KYLSTQACQ 271 (722)
T ss_pred eeecchhcc
Confidence 666666663
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.1e-09 Score=123.54 Aligned_cols=197 Identities=29% Similarity=0.408 Sum_probs=132.0
Q ss_pred EEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCC-CCcEEeccCCCCccccCccccCCCCccEEEecCcc
Q 003104 355 FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 433 (847)
Q Consensus 355 ~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 433 (847)
.+++..+........+..++.++.|++.++ .+..+++..+.++ +|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 455555544344444444556666666653 3455555666664 67777776643 55555556677777777777755
Q ss_pred CCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCC
Q 003104 434 KLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFT 513 (847)
Q Consensus 434 ~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~ 513 (847)
+..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+++|.... ....+.
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~------------------------~~~~~~ 229 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE------------------------LLSSLS 229 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee------------------------cchhhh
Confidence 3445555556777888888888888888777677778888887774111 122256
Q ss_pred CCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 514 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 514 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
.+.++..|.+.+|.+. .++..++.+++|++|++++|.++.++. ++.+.+|+.|+++++.....+|
T Consensus 230 ~~~~l~~l~l~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 230 NLKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hcccccccccCCceee--eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 6677777777777754 347778888889999999998888886 8888889999998886555443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.2e-10 Score=123.15 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCcc-----cCCCCCCCEEECcCCCCcccch--hhhcCCCCCEEeecCCC
Q 003104 512 FTGLSSLQTLDLSDCNLLEGAIPSD-----IGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCR 575 (847)
Q Consensus 512 l~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~sL~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 575 (847)
.+.++.|+.|+++.|.+.+-..|.. ...+++|++|+++.|++...++ .+..+++|+.|.+..+.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 3344444444444444332222322 2345666666666666654442 33445556666555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.8e-10 Score=120.47 Aligned_cols=62 Identities=29% Similarity=0.388 Sum_probs=35.8
Q ss_pred CCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc--ccchh-----hhcCCCCCEEeecCCC
Q 003104 514 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSS-----INQLLKLKILCLEKCR 575 (847)
Q Consensus 514 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~--~lp~~-----i~~l~~L~~L~L~~c~ 575 (847)
-+..|++|||++|++.+-..-...+.|+.|+.|+++.|.+. ..|+. ...+++|+.|+++.|+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 34456666666666654222244566666666666666665 23433 3456666777666664
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.4e-09 Score=120.69 Aligned_cols=191 Identities=25% Similarity=0.325 Sum_probs=157.8
Q ss_pred EEEEcCcccCCCccccC--CCcceEEecCCCCCCCCCCCCCC--CcEEEEccCCCccccccccccCcCCCEEEcCCCCCC
Q 003104 289 LLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSFRPE--KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 364 (847)
Q Consensus 289 ~L~l~~~~l~~~~~~~~--~~L~~L~~~~~~~~~lp~~~~~~--~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l 364 (847)
.++...+.+........ ..+..|.+.++.+..+|...... +|+.|++++|.+..+|..+..+++|+.|++++|+..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 57777777644444333 46999999999999999988543 899999999999999888999999999999999776
Q ss_pred CCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccC
Q 003104 365 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 444 (847)
Q Consensus 365 ~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~ 444 (847)
...+..+.+++|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++.++..|.+.++. ...++..++.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhcc
Confidence 666666689999999999965 77888888888889999999975 34455557788889988876644 4555788899
Q ss_pred CCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCC
Q 003104 445 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 445 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 483 (847)
+.+|+.|++++|.++.++. ++.+.+|+.|+++++....
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 9999999999999999988 9999999999999987543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1e-10 Score=127.30 Aligned_cols=188 Identities=21% Similarity=0.278 Sum_probs=103.5
Q ss_pred CcEEEEcCcccCCCccc--cCCCcceEEecCCCCCCCCCCC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCC
Q 003104 287 LRLLEINNLYSSGNLEY--LSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCN 363 (847)
Q Consensus 287 Lr~L~l~~~~l~~~~~~--~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~ 363 (847)
-...+++.|.++..... .+..|..|.+..|.+..+|..+ .+..|++|+|+.|++..+|..+..|+ |+.|.+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 34455555555543221 2234555555556666666555 56666666666666666666655544 66666666654
Q ss_pred CCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcccc
Q 003104 364 LIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG 443 (847)
Q Consensus 364 l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 443 (847)
...+++++.++.|..|+.+.|. +..+|+.++.+.+|+.|+++.|+ +..+|..++.| .|..||++.| +...+|-.+.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr 231 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFR 231 (722)
T ss_pred ccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhh
Confidence 4444456666666666666543 44555666666666666666643 44555555533 3556666543 3455566666
Q ss_pred CCCcccEEEecCccccccCcccc---CCCCCCEEEeCCC
Q 003104 444 EVECLEELDVGGTAIRQIPPSIV---QLVNLKIFSLHGC 479 (847)
Q Consensus 444 ~l~~L~~L~L~~~~i~~lp~~i~---~l~~L~~L~L~~~ 479 (847)
+|+.|++|-|.+|.++.-|..|. ...=-++|+...|
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 66666666666666665555542 2223345555544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=1.3e-09 Score=109.81 Aligned_cols=126 Identities=25% Similarity=0.304 Sum_probs=80.7
Q ss_pred CCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCC
Q 003104 420 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 499 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~ 499 (847)
..+.|++|+||+|. ...+.+++.-.+.++.|++++|.+..+.. +..+++|+.|+|++|....
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~---------------- 343 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE---------------- 343 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh----------------
Confidence 34556667777654 34455556666667777777777766644 6667777777777765321
Q ss_pred CCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc--hhhhcCCCCCEEeecCCC
Q 003104 500 KNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCR 575 (847)
Q Consensus 500 ~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 575 (847)
+.. -..+-+.+.|.|+.|.+- -.+.++.+-+|..|++++|++..+. ..|+++|.|+.|.|.+|+
T Consensus 344 ---------~~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 344 ---------CVGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---------hhhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 000 123446677777777642 3345667778888888888877443 367888888888888886
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.82 E-value=1.3e-10 Score=119.96 Aligned_cols=199 Identities=20% Similarity=0.256 Sum_probs=128.0
Q ss_pred cccccCcCCCEEEcCCCCCCCCCCC-----CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCcccc
Q 003104 345 KGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 419 (847)
Q Consensus 345 ~~~~~l~~L~~L~L~~~~~l~~~p~-----~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~ 419 (847)
+.+...++|++||||+|.+-...+. ++.+.+|++|.|.+|..-..--..++. .|..|. . .+ .+.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~---~k----k~~ 154 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V---NK----KAA 154 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H---Hh----ccC
Confidence 3455677888888888876654432 566888888888887543221111111 111111 0 11 133
Q ss_pred CCCCccEEEecCccCCCcC-----CccccCCCcccEEEecCcccc-----ccCccccCCCCCCEEEeCCCCCCCCCcCcc
Q 003104 420 LMKSLKILCLCGCLKLEKL-----PQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILSS 489 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~l-----p~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~ 489 (847)
.-+.|+++....|.. +.. ...+...+.|+.+.+..|.|. -+-..+.++++|+.|+|.+|.......
T Consensus 155 ~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--- 230 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--- 230 (382)
T ss_pred CCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---
Confidence 456788887776553 322 234566678888888888776 234466888999999999886432100
Q ss_pred hhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCC---Cccc-CCCCCCCEEECcCCCCc-----ccchh
Q 003104 490 NFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAI---PSDI-GSLFSLEAIDLSGNNFF-----SLPSS 559 (847)
Q Consensus 490 ~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~l---p~~l-~~l~sL~~L~Ls~n~l~-----~lp~~ 559 (847)
..+.. ++.+++|+.|.+++|.+.+..- -..+ ...++|+.|.+.+|.++ .+-.+
T Consensus 231 -----------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 231 -----------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred -----------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 11112 6678899999999998764321 1111 34789999999999887 34456
Q ss_pred hhcCCCCCEEeecCCC
Q 003104 560 INQLLKLKILCLEKCR 575 (847)
Q Consensus 560 i~~l~~L~~L~L~~c~ 575 (847)
+...+.|+.|+|++|+
T Consensus 294 ~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcchhhHHhcCCccc
Confidence 7789999999999996
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=5.7e-09 Score=105.21 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=65.3
Q ss_pred CCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccC
Q 003104 328 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 407 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~ 407 (847)
+.|++|||++|.|+.+.++++-+|+++.|++|+|.+.. +.++..+++|+.|||++|. +.++...-..|-+.+.|+|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence 35667777777777777777777777777777764432 3335556666666666653 222222223344444555555
Q ss_pred CCCccccCccccCCCCccEEEecCccCCCc-CCccccCCCcccEEEecCccccc
Q 003104 408 CRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQ 460 (847)
Q Consensus 408 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~~ 460 (847)
|. ++++.. +.++.+|..|++++|+.... --..++++++|+.+.+.+|.+..
T Consensus 362 N~-iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NK-IETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hh-Hhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 32 333322 34444555555554432210 01234444444444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.2e-08 Score=96.31 Aligned_cols=104 Identities=26% Similarity=0.263 Sum_probs=28.2
Q ss_pred cCCCCCcEEEEcCcccCC--CccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccccc-ccCcCCCEEEc
Q 003104 282 STMSNLRLLEINNLYSSG--NLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGI-KPLKELKFMNL 358 (847)
Q Consensus 282 ~~~~~Lr~L~l~~~~l~~--~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~L 358 (847)
.+..++|.|+++++.++. .+.....+|+.|++++|.+++++..-.+++|++|++++|.|+.+.+++ ..+++|+.|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 345566777777776663 222233456666666666666665446666666666666666665444 34666666666
Q ss_pred CCCCCCCC--CCCCCCCCcCcEeeccCcc
Q 003104 359 SHSCNLIR--TPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 359 ~~~~~l~~--~p~~~~l~~L~~L~L~~c~ 385 (847)
++|++... +..++.+++|+.|+|.+|+
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 66644321 1124455555555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=3.6e-08 Score=95.98 Aligned_cols=134 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCcEEEEccCCCccccccccc-cCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccc-cC
Q 003104 319 NSLPVSFRPEKLFKLNLCNSRIKYLWKGIK-PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSV-GT 396 (847)
Q Consensus 319 ~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i-~~ 396 (847)
+..|...++.++++|+|++|.|+.+. .+. .+.+|+.|+|++|.+ ..++.+..+++|++|++++|... .+...+ ..
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~ 86 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCC-ccccchHHh
Confidence 33444445666777777777777663 344 467777777777743 34555666666666666665432 232222 23
Q ss_pred CCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc----cccCCCCCC
Q 003104 397 LKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLK 472 (847)
Q Consensus 397 L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~ 472 (847)
+++|+.|++++|.. ..+. . -..+..+++|+.|++.+|.++.-+. .+..+|+|+
T Consensus 87 lp~L~~L~L~~N~I-~~l~---------------------~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 87 LPNLQELYLSNNKI-SDLN---------------------E-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp -TT--EEE-TTS----SCC---------------------C-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred CCcCCEEECcCCcC-CChH---------------------H-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 45555555555431 1110 1 1234455666666666666664432 345677777
Q ss_pred EEEeCC
Q 003104 473 IFSLHG 478 (847)
Q Consensus 473 ~L~L~~ 478 (847)
.||-..
T Consensus 144 ~LD~~~ 149 (175)
T PF14580_consen 144 VLDGQD 149 (175)
T ss_dssp EETTEE
T ss_pred eeCCEE
Confidence 776543
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=8.7e-07 Score=96.50 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=17.1
Q ss_pred CCCCEEeecCCCCCccCCCCCCCcceeeccC
Q 003104 564 LKLKILCLEKCRNLKSLPELPPEIVFVGAED 594 (847)
Q Consensus 564 ~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~ 594 (847)
++|+.|++++|..+...+.+|.+|+.|.++.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEecc
Confidence 3556666666654432224666666666654
No 38
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.45 E-value=3.1e-07 Score=98.80 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=64.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc-----cchhhhHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII-----WDVHKGINL 89 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~-----~~~~~~~~~ 89 (847)
+.++|+|++|+||||||+.||+.+.. +|+.++|+..+.+.. ..+.++|+++...+........ .........
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~--~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP--EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch--hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997654 799999999776632 3577888888644322111000 001111112
Q ss_pred HHHH-hcCCcEEEEEcCCCCHHHHHHH
Q 003104 90 IRWR-LCRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 90 i~~~-L~~kk~LlVLDDV~~~~~l~~L 115 (847)
-+.. -.+++++|++|++.....-...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arAqre 274 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARAYNT 274 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHHHHh
Confidence 2222 3789999999999876654443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=4e-07 Score=107.86 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecC
Q 003104 353 LKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 431 (847)
Q Consensus 353 L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 431 (847)
++.|+|++|.....+|. ++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666555553 66667777777777666666776777777777777777766666777677777777777777
Q ss_pred ccCCCcCCccccCC-CcccEEEecCcc
Q 003104 432 CLKLEKLPQDLGEV-ECLEELDVGGTA 457 (847)
Q Consensus 432 c~~l~~lp~~l~~l-~~L~~L~L~~~~ 457 (847)
|...+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77666777666543 345666666664
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=3.4e-07 Score=108.46 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=93.6
Q ss_pred cCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEec
Q 003104 375 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 454 (847)
Q Consensus 375 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 454 (847)
.++.|+|++|...+.+|.+++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988888899999999999999999998888899889999999999999999889999999999999999999
Q ss_pred Ccccc-ccCccccCC-CCCCEEEeCCCCC
Q 003104 455 GTAIR-QIPPSIVQL-VNLKIFSLHGCKG 481 (847)
Q Consensus 455 ~~~i~-~lp~~i~~l-~~L~~L~L~~~~~ 481 (847)
+|.++ .+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99988 888887653 5677888887753
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=8e-07 Score=96.78 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCccEEEecCccCCCcCCccccCCCcccEEEecC-ccccccCccccCCCCCCEEEeCCCC
Q 003104 421 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPPSIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 421 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~lp~~i~~l~~L~~L~L~~~~ 480 (847)
+.+++.|++++| .+..+|. -..+|+.|.+++ +.++.+|..+ .++|++|.+++|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 455666666655 3444442 123455555554 2334444333 2355555555553
No 42
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=4.1e-07 Score=94.21 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=62.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEEEecccccccCChHHHHHHHHHHHhcCC-Ccc----ccchhhhHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-DLI----IWDVHKGINL 89 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~-~~~----~~~~~~~~~~ 89 (847)
+.++|.|++|+|||||++.+|+.+.. +|+.++|+.++.+. .....++++++...+.... +.. ..-.......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999996643 79999999965442 3578888888843332111 100 0111122222
Q ss_pred HHHH-hcCCcEEEEEcCCCCHHH
Q 003104 90 IRWR-LCRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 90 i~~~-L~~kk~LlVLDDV~~~~~ 111 (847)
.+.+ -.++++++++|++....+
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhh
Confidence 3222 358999999999976644
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-08 Score=103.24 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=100.4
Q ss_pred CcEeeccCcccc-ccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCC--ccccCCCcccEEE
Q 003104 376 LERLNLEGCTRL-LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP--QDLGEVECLEELD 452 (847)
Q Consensus 376 L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~ 452 (847)
||+|||+..... ..++.-+..+.+|+.|.+.+++....+...+.+-.+|+.|++++|+...... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555543222 1233444556666666666665555555556666677777777776655432 2346667777777
Q ss_pred ecCcccc--ccCccccC-CCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCC
Q 003104 453 VGGTAIR--QIPPSIVQ-LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNL 528 (847)
Q Consensus 453 L~~~~i~--~lp~~i~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l 528 (847)
++++.+. .+...+.+ -++|+.|+++||...... ..+.. ...+++|.+|||++|..
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---------------------sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---------------------SHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---------------------hHHHHHHHhCCceeeeccccccc
Confidence 7776554 11111222 257888888887632200 01111 35678888888888876
Q ss_pred CCCCCCcccCCCCCCCEEECcCCCCcccch---hhhcCCCCCEEeecCC
Q 003104 529 LEGAIPSDIGSLFSLEAIDLSGNNFFSLPS---SINQLLKLKILCLEKC 574 (847)
Q Consensus 529 ~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~---~i~~l~~L~~L~L~~c 574 (847)
+....-..+..++.|++|.++.|..- .|. .+...|+|.+|++.+|
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 55444445566777777777776421 121 3355566666666665
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2e-08 Score=101.52 Aligned_cols=177 Identities=24% Similarity=0.256 Sum_probs=123.9
Q ss_pred CcEEEEccCCCcc--ccccccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCcccccccc--ccccCCCCCcEE
Q 003104 329 KLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILL 403 (847)
Q Consensus 329 ~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L 403 (847)
.|++|||+++.|+ ++-.-++.+.+|+.|.|.+++....+- .+.+-.+|+.|+|++|..+.+-. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888899988887 555557889999999999886655443 37888999999999998665433 345788999999
Q ss_pred eccCCCCccccCc-ccc-CCCCccEEEecCccCC---CcCCccccCCCcccEEEecCcc-cc-ccCccccCCCCCCEEEe
Q 003104 404 NLKDCRNLVSFPK-NVC-LMKSLKILCLCGCLKL---EKLPQDLGEVECLEELDVGGTA-IR-QIPPSIVQLVNLKIFSL 476 (847)
Q Consensus 404 ~L~~c~~l~~lp~-~i~-~l~~L~~L~Ls~c~~l---~~lp~~l~~l~~L~~L~L~~~~-i~-~lp~~i~~l~~L~~L~L 476 (847)
|+++|......-. .+. --+.|..|+++||... ..+..-...+++|.+|||+++. ++ ..-..+.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999975543211 111 1357889999997642 1222234678899999998864 33 34445678899999999
Q ss_pred CCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCC
Q 003104 477 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCN 527 (847)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~ 527 (847)
+.|....+ ..+-.+...|+|.+|++.+|-
T Consensus 346 sRCY~i~p----------------------~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIP----------------------ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCCh----------------------HHeeeeccCcceEEEEecccc
Confidence 99975542 222236677778888777663
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-07 Score=107.44 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=35.8
Q ss_pred ccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCC
Q 003104 394 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLK 472 (847)
Q Consensus 394 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 472 (847)
+..+++|++|++++|. ++.+.. +..++.|+.|++++|.... + ..+..+++|+.+++++|.+..+... +..+.+|+
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheeccccc-cccccc-hhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence 3444444444444432 222221 3334445555555543221 1 1222344555555555555544432 34455555
Q ss_pred EEEeCCCC
Q 003104 473 IFSLHGCK 480 (847)
Q Consensus 473 ~L~L~~~~ 480 (847)
.+.+.+|.
T Consensus 190 ~l~l~~n~ 197 (414)
T KOG0531|consen 190 ELDLGGNS 197 (414)
T ss_pred HHhccCCc
Confidence 55555554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2e-07 Score=105.39 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCCCcEEEEcCcccCCCcc--ccCCCcceEEecCCCCCCCCC-CCCCCCcEEEEccCCCccccccccccCcCCCEEEcCC
Q 003104 284 MSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPV-SFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSH 360 (847)
Q Consensus 284 ~~~Lr~L~l~~~~l~~~~~--~~~~~L~~L~~~~~~~~~lp~-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~ 360 (847)
+..+..+.+..|.+..... ....+|..|.+.++.++.+.. .-.+.+|++|++++|.|+++. ++..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 3344444444444443111 223344445555555544444 224555555555555555552 344444455555555
Q ss_pred CCCCCCCCCCCCCCcCcEeeccCcc
Q 003104 361 SCNLIRTPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 361 ~~~l~~~p~~~~l~~L~~L~L~~c~ 385 (847)
|. +..++.+..+++|+.+++++|.
T Consensus 150 N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 150 NL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred Cc-chhccCCccchhhhcccCCcch
Confidence 52 2333444445555555555543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=3.8e-08 Score=104.11 Aligned_cols=252 Identities=17% Similarity=0.219 Sum_probs=136.7
Q ss_pred cccCcCCCEEEcCCCCCCCCCC--CC-CCCCcCcEeeccCccccccccc--cccCCCCCcEEeccCCCCccc--cCcccc
Q 003104 347 IKPLKELKFMNLSHSCNLIRTP--DF-TGVPNLERLNLEGCTRLLEVHQ--SVGTLKRLILLNLKDCRNLVS--FPKNVC 419 (847)
Q Consensus 347 ~~~l~~L~~L~L~~~~~l~~~p--~~-~~l~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~L~~c~~l~~--lp~~i~ 419 (847)
..+++++++|.+.+|..++... .+ ..+++|++|+|..|..+....- -...+++|.+|++++|..+.. +-.-..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4567777777777776444332 12 3477788888887766554321 234577888888888775543 111123
Q ss_pred CCCCccEEEecCccCCCc--CCccccCCCcccEEEecCc-cccccC--ccccCCCCCCEEEeCCCCCCCCCcCcchhhcc
Q 003104 420 LMKSLKILCLCGCLKLEK--LPQDLGEVECLEELDVGGT-AIRQIP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLS 494 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~-~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 494 (847)
+++.|+.+.+.||...+. +-..-+.+.-+.++++..+ .++... ..-..+..|+.|..++|....+.+
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~-------- 311 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV-------- 311 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH--------
Confidence 455566666667654431 1111122233444444443 222111 011335667777777765432211
Q ss_pred cccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCc-ccCCCCCCCEEECcCCCCc---ccchhhhcCCCCCEE
Q 003104 495 LLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFF---SLPSSINQLLKLKIL 569 (847)
Q Consensus 495 l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~sL~~L~Ls~n~l~---~lp~~i~~l~~L~~L 569 (847)
+.. -.+.++|+.|.++.|+..++.--. .-.+.+.|+.|++.++... ++-.--.+++.|+.|
T Consensus 312 --------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 312 --------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred --------------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 111 245677888888887644322111 2245677888888777443 233333567888888
Q ss_pred eecCCCCCccC--C------CCCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhh
Q 003104 570 CLEKCRNLKSL--P------ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKD 631 (847)
Q Consensus 570 ~L~~c~~L~~l--p------~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n 631 (847)
.|++|..++.- . .-...++.+.+.+|+.+..-.+.. +.+|++|+.+++-..
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----------l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-----------LSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH-----------HhhCcccceeeeech
Confidence 88888766543 1 122456666777777665544422 456666666554433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.18 E-value=2.8e-07 Score=95.65 Aligned_cols=214 Identities=18% Similarity=0.139 Sum_probs=113.6
Q ss_pred CCCCcEEEEccCCCcc-----ccccccccCcCCCEEEcCCCCCCCC----CCCCCCCCcCcEeeccCccccccccccccC
Q 003104 326 RPEKLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSVGT 396 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l~~----~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~ 396 (847)
....++.++|++|.+. .+-+.+.+.++|+..++++- ++.. +|+ .+..+.+.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e----------------~L~~l~~aL~~ 90 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPE----------------ALKMLSKALLG 90 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHH----------------HHHHHHHHHhc
Confidence 3456666777776664 23344556666776666643 1211 111 01111123334
Q ss_pred CCCCcEEeccCCCCccccCc----cccCCCCccEEEecCccCCCc-------------CCccccCCCcccEEEecCcccc
Q 003104 397 LKRLILLNLKDCRNLVSFPK----NVCLMKSLKILCLCGCLKLEK-------------LPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 397 L~~L~~L~L~~c~~l~~lp~----~i~~l~~L~~L~Ls~c~~l~~-------------lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
+++|++|||++|-.....+. -+.++.+|+.|.|.+|..... ...-.+.-+.|+.+...+|.+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 44555555555544333222 123455666666665543211 1122344567888888887776
Q ss_pred ccC-----ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCC---
Q 003104 460 QIP-----PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG--- 531 (847)
Q Consensus 460 ~lp-----~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~--- 531 (847)
.-+ ..+...+.|+.+.+..|...... .......+..+++|+.|||.+|-+...
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG-------------------~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEG-------------------VTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCch-------------------hHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 433 33455677788877777643310 000111266777888888887765421
Q ss_pred CCCcccCCCCCCCEEECcCCCCc-----ccchhh-hcCCCCCEEeecCCC
Q 003104 532 AIPSDIGSLFSLEAIDLSGNNFF-----SLPSSI-NQLLKLKILCLEKCR 575 (847)
Q Consensus 532 ~lp~~l~~l~sL~~L~Ls~n~l~-----~lp~~i-~~l~~L~~L~L~~c~ 575 (847)
.+...+..+++|+.|++++|.+. .+-..+ ...|+|+.|.+.+|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 12334566777888888887766 122222 346777777777774
No 49
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.13 E-value=7e-06 Score=76.74 Aligned_cols=90 Identities=26% Similarity=0.308 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-----CCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-----F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~ 89 (847)
-+++.|+|.+|+||||+++.+.+..... -...+|+. .........+.++++.++-.. .....+..+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLP-LKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-S-SSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCcc-ccccCCHHHHHHH
Confidence 4688999999999999999999976543 23344655 444447788888888885322 2222345556677
Q ss_pred HHHHhcCCc-EEEEEcCCCCH
Q 003104 90 IRWRLCRKR-VLVILDDVDQL 109 (847)
Q Consensus 90 i~~~L~~kk-~LlVLDDV~~~ 109 (847)
+.+.+...+ .+||+||++..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 777776554 59999999754
No 50
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=4.7e-06 Score=90.43 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=63.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEEEecccccccCChHHHHHHHHHHHhcCCCcc-ccc----hhhhHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-IWD----VHKGINL 89 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~-~~~----~~~~~~~ 89 (847)
+.++|+|.+|.||||||+.+++.+... |+..+|+..+.+. ...+.+++++++..+....--. ... .......
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468899999999999999999977655 9999999966443 2468888888866543221100 000 0111122
Q ss_pred HHH-HhcCCcEEEEEcCCCCHHH
Q 003104 90 IRW-RLCRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 90 i~~-~L~~kk~LlVLDDV~~~~~ 111 (847)
.+. +-++|+++|++|++.....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHH
Confidence 222 2368999999999976654
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=2.9e-06 Score=67.68 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=31.9
Q ss_pred CcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCc
Q 003104 329 KLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 384 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c 384 (847)
+|++|++++|+++.+|. .+..+++|++|++++|.+....|+ |.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666666653 355666666666666554433332 555566666655555
No 52
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.05 E-value=8.1e-05 Score=83.90 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=64.5
Q ss_pred hHHHHhHhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCc-
Q 003104 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL- 78 (847)
Q Consensus 2 ~~i~~lL~~~--~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~- 78 (847)
++|...+... ......+-|+|++|+||||+++.+++++........|+..- .....+...+..+++.++......
T Consensus 40 ~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in--~~~~~~~~~~~~~i~~~l~~~~~~~ 117 (394)
T PRK00411 40 EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN--CQIDRTRYAIFSEIARQLFGHPPPS 117 (394)
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE--CCcCCCHHHHHHHHHHHhcCCCCCC
Confidence 3455555322 23334567999999999999999999876654222333210 222334566777888875432211
Q ss_pred cccchhhhHHHHHHHhc--CCcEEEEEcCCCCH
Q 003104 79 IIWDVHKGINLIRWRLC--RKRVLVILDDVDQL 109 (847)
Q Consensus 79 ~~~~~~~~~~~i~~~L~--~kk~LlVLDDV~~~ 109 (847)
...+..+....+.+.++ ++.++||||+++..
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 118 SGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 11234455666777775 45689999999854
No 53
>PF05729 NACHT: NACHT domain
Probab=97.96 E-value=2.1e-05 Score=76.59 Aligned_cols=88 Identities=31% Similarity=0.431 Sum_probs=51.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC------CceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F------~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~ 89 (847)
|++.|.|.+|+||||+++.+..++.... ...+|+ ..+..........+...+..... .... .... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~-~~~~---~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQLP-ESIA---PIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHhhc-cchh---hhHH---H
Confidence 6899999999999999999999766553 233333 33333332222344444444421 1111 1111 1
Q ss_pred HHHH-hcCCcEEEEEcCCCCHHH
Q 003104 90 IRWR-LCRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 90 i~~~-L~~kk~LlVLDDV~~~~~ 111 (847)
+... -+.+++++|+|++|+...
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEE 95 (166)
T ss_pred HHHHHHcCCceEEEEechHhccc
Confidence 2222 267899999999986543
No 54
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.92 E-value=4.2e-05 Score=81.25 Aligned_cols=89 Identities=22% Similarity=0.190 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHH-
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR- 93 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~- 93 (847)
-.++.|+|+.|+||||+|+.+++.....=-..+++. ....+...+.+.+...+ +.. ....+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~l-G~~-~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADF-GLE-TEGRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHc-CCC-CCCCCHHHHHHHHHHHH
Confidence 358999999999999999999997653201122332 22234556666666653 221 1111112222333332
Q ss_pred ----hcCCcEEEEEcCCCCHH
Q 003104 94 ----LCRKRVLVILDDVDQLE 110 (847)
Q Consensus 94 ----L~~kk~LlVLDDV~~~~ 110 (847)
..++++++|+||++...
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHHhCCCCeEEEEECcccCC
Confidence 26788999999998643
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=1.6e-05 Score=63.35 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.0
Q ss_pred cCCCCccEEEecC
Q 003104 419 CLMKSLKILCLCG 431 (847)
Q Consensus 419 ~~l~~L~~L~Ls~ 431 (847)
..+++|++|++++
T Consensus 46 ~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 46 SNLPNLRYLDLSN 58 (61)
T ss_dssp TTSTTESEEEETS
T ss_pred cCCCCCCEEeCcC
Confidence 3333333333333
No 56
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.80 E-value=9.7e-05 Score=82.32 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=62.0
Q ss_pred hHHHHhHhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC------ceeEEEecccccccCChHHHHHHHHHHHh
Q 003104 2 EKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (847)
Q Consensus 2 ~~i~~lL~~--~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~------~~~~v~~~~~~s~~~~l~~l~~~il~~~l 73 (847)
++|...|.. .......+-|+|++|+||||+|+++++.+....+ ..+|+. .....+...+..+++.++.
T Consensus 25 ~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTLYQVLVELANQLR 100 (365)
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCHHHHHHHHHHHHh
Confidence 345555542 1233457899999999999999999997654322 133333 2223345567777777753
Q ss_pred c-CCCcc--ccchhhhHHHHHHHh--cCCcEEEEEcCCCCH
Q 003104 74 M-ERDLI--IWDVHKGINLIRWRL--CRKRVLVILDDVDQL 109 (847)
Q Consensus 74 ~-~~~~~--~~~~~~~~~~i~~~L--~~kk~LlVLDDV~~~ 109 (847)
. +.... ..+..+....+.+.+ .+++++||||+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 101 GSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 2 11111 112233445555666 356889999999865
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=8.2e-06 Score=82.93 Aligned_cols=212 Identities=18% Similarity=0.182 Sum_probs=114.9
Q ss_pred CCCCcEEEEccCCCccc---cccccccCcCCCEEEcCCCCCCCCCCCC-CCCCcCcEeeccCcccc-ccccccccCCCCC
Q 003104 326 RPEKLFKLNLCNSRIKY---LWKGIKPLKELKFMNLSHSCNLIRTPDF-TGVPNLERLNLEGCTRL-LEVHQSVGTLKRL 400 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~L~~~~~l~~~p~~-~~l~~L~~L~L~~c~~l-~~lp~~i~~L~~L 400 (847)
....+++|||.+|.|.. +..-+.+||+|++|+|+.|+....+..+ ....||++|.|.|.... ..+.+.+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46678888999988873 3334678999999999988766554444 35668888888774321 1222333444444
Q ss_pred cEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCC
Q 003104 401 ILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 401 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 480 (847)
+.|.++.| + ++.+.++.+.++... +.+++|.+.+|.
T Consensus 149 telHmS~N------------------------~--------------~rq~n~Dd~c~e~~s------~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 149 TELHMSDN------------------------S--------------LRQLNLDDNCIEDWS------TEVLTLHQLPCL 184 (418)
T ss_pred hhhhhccc------------------------h--------------hhhhccccccccccc------hhhhhhhcCCcH
Confidence 44444443 1 222222222222111 112222222222
Q ss_pred CCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc--h
Q 003104 481 GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP--S 558 (847)
Q Consensus 481 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp--~ 558 (847)
... .. +.+.. -.-+|++..+-+..|.+.+..-......++++-.|+|+.|++.+.. .
T Consensus 185 ~~~--w~-------------~~~~l------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 185 EQL--WL-------------NKNKL------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred HHH--HH-------------HHHhH------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence 100 00 00000 1123455555566665544333444555677778888888877543 2
Q ss_pred hhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCccccccccc
Q 003104 559 SINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAF 604 (847)
Q Consensus 559 ~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~ 604 (847)
.+.++++|..|.+++++....+.. ..=+.|-+...++++.+..+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEecCc
Confidence 567888888899988887766654 12234555667777776543
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.74 E-value=9e-07 Score=93.89 Aligned_cols=260 Identities=19% Similarity=0.238 Sum_probs=151.2
Q ss_pred cCCCEEEcCCCCCCCCCCC---CCCCCcCcEeeccCcccccccc-cc-ccCCCCCcEEeccCCCCccccC--ccccCCCC
Q 003104 351 KELKFMNLSHSCNLIRTPD---FTGVPNLERLNLEGCTRLLEVH-QS-VGTLKRLILLNLKDCRNLVSFP--KNVCLMKS 423 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p~---~~~l~~L~~L~L~~c~~l~~lp-~~-i~~L~~L~~L~L~~c~~l~~lp--~~i~~l~~ 423 (847)
..||.|.++++.....-+- -..+||+++|.+.+|..+.+.. .+ -..+++|++|++..|..++... .....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577788888765544432 5679999999999998655421 22 2568999999999988776532 12346789
Q ss_pred ccEEEecCccCCCc--CCccccCCCcccEEEecCcccc---ccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccC
Q 003104 424 LKILCLCGCLKLEK--LPQDLGEVECLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLP 498 (847)
Q Consensus 424 L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~ 498 (847)
|++|+++.|..... +-....++..++.+.+.|+.=. .+-..=....-+..+++..|....+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~------------ 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED------------ 285 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH------------
Confidence 99999999876543 2222344445555555543111 111111233445555555553222100
Q ss_pred CCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCccc-CCCCCCCEEECcCCC-Cccc--chhhhcCCCCCEEeecCC
Q 003104 499 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNN-FFSL--PSSINQLLKLKILCLEKC 574 (847)
Q Consensus 499 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l-~~l~sL~~L~Ls~n~-l~~l--p~~i~~l~~L~~L~L~~c 574 (847)
.+..-.++..|+.|+.++|...++..-..+ .+.++|+.|.+++|+ |+.. ..--.+.+.|+.+++..|
T Consensus 286 ---------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 286 ---------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred ---------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 001123567888999988875443333333 457899999999984 4422 212257788999999888
Q ss_pred CCCccC--CCCC---CCcceeeccCCcccccccccc--c--cCCCCCceEEEccCCCcchhhhhhh
Q 003104 575 RNLKSL--PELP---PEIVFVGAEDCTSLETISAFA--K--LSRSPNIALNFLNCFKLVEDQVSKD 631 (847)
Q Consensus 575 ~~L~~l--p~lp---~sL~~L~i~~c~~L~~l~~~~--~--~~~~~~~~~~~~nc~~L~~l~~~~n 631 (847)
.....- -.+. +.|+.|.++.|.......... + -.......+.+.|||...+--+..+
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 654432 1221 556666666666555441111 0 0122345677889998866544433
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=5.4e-07 Score=101.15 Aligned_cols=122 Identities=25% Similarity=0.246 Sum_probs=76.0
Q ss_pred CccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCC
Q 003104 423 SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNS 502 (847)
Q Consensus 423 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~ 502 (847)
.|.+.+.++|. +..+.+.+.-++.|+.|+|++|+++.+. .+..++.|++|+|+.|....
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~------------------- 223 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH------------------- 223 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-------------------
Confidence 35555555543 3445556666777788888888777665 66777778888877765322
Q ss_pred CCccccCCCC--CCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc--hhhhcCCCCCEEeecCCC
Q 003104 503 DSMCLSFPRF--TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCR 575 (847)
Q Consensus 503 ~~~~~~l~~l--~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 575 (847)
+|.+ .++ .|..|.|++|.+. -...+.+|.+|+.||+++|-+.... ..+..|..|+.|.|.+|+
T Consensus 224 ------vp~l~~~gc-~L~~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 224 ------VPQLSMVGC-KLQLLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ------ccccchhhh-hheeeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2331 223 3777777777653 2334667777777787777554221 134566777777777776
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=3.5e-05 Score=56.56 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=27.3
Q ss_pred CCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC
Q 003104 541 FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 541 ~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 582 (847)
++|++|++++|+++.+|..+++|++|+.|++++|+ ++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 36777777777777777667777777777777773 444443
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=8e-07 Score=99.84 Aligned_cols=177 Identities=27% Similarity=0.222 Sum_probs=94.7
Q ss_pred chhhcCCCCCcEEEEcCcccCC--CccccCCCcceEEecCC----------CCCCCCCCCCCCCcEEEEccCCCcccccc
Q 003104 278 AKSFSTMSNLRLLEINNLYSSG--NLEYLSNNLRYLKWHEY----------PFNSLPVSFRPEKLFKLNLCNSRIKYLWK 345 (847)
Q Consensus 278 ~~~f~~~~~Lr~L~l~~~~l~~--~~~~~~~~L~~L~~~~~----------~~~~lp~~~~~~~L~~L~L~~~~l~~l~~ 345 (847)
+-.+..++.||+|.+.++.+.. ++..+-..|+.|-..+- ....+...+....|.+.+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 3445677888999888776553 22222222322221110 01222333344456666666777766666
Q ss_pred ccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccc-cccCCCCCcEEeccCCCCccccCccccCCCCc
Q 003104 346 GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQ-SVGTLKRLILLNLKDCRNLVSFPKNVCLMKSL 424 (847)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L 424 (847)
.+.-++.|+.|||++|++...- .+..++.|++|||++|. +..+|. +...++ |+.|++++|. ++++-. +.++++|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g-ie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG-IENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhhhh-HHhhhhh
Confidence 6666777777777776544322 55666777777777654 333332 222233 6667776643 334432 5667777
Q ss_pred cEEEecCccCCCcC-CccccCCCcccEEEecCcccc
Q 003104 425 KILCLCGCLKLEKL-PQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 425 ~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~ 459 (847)
+.|++++|-..+.- -+.+..+..|+.|+|.||.+-
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777765443211 112344555666666666543
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00023 Score=67.35 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.-+.|-|+|.+|+||||+|+++++.+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3467889999999999999999998753
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.58 E-value=0.00027 Score=70.22 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=27.2
Q ss_pred hHHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 2 ~~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+++...|. ......+.+-|+|.+|+|||||+++++.++..+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45666663 233456999999999999999999999988776
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=3.3e-05 Score=78.69 Aligned_cols=205 Identities=14% Similarity=0.052 Sum_probs=107.2
Q ss_pred CCCcEEeccCCCCcc--ccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc--ccCccccCCCCCCE
Q 003104 398 KRLILLNLKDCRNLV--SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKI 473 (847)
Q Consensus 398 ~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~ 473 (847)
+.++.|||.+|.... .+-.-+.+++.|++|+++.|+....+-..-..+.+|+.|-|.++.+. ...+.+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 444555555543211 12222345666666666655443221111023456777777776655 45555667777777
Q ss_pred EEeCCCCCCCCCcCcchhhcccccCCCCCC-CccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCC
Q 003104 474 FSLHGCKGQPPKILSSNFFLSLLLPNKNSD-SMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN 552 (847)
Q Consensus 474 L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~ 552 (847)
|.++.|+.... .+ ..++. ......-.+...+++..+.++-|++ -.-++++..+.+..|.
T Consensus 151 lHmS~N~~rq~-----------n~-Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l--------~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 151 LHMSDNSLRQL-----------NL-DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL--------SRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhccchhhhh-----------cc-ccccccccchhhhhhhcCCcHHHHHHHHHhH--------HhhcccchheeeecCc
Confidence 77776641110 00 00000 0000011122233333333333332 2347889999999998
Q ss_pred Ccccc--hhhhcCCCCCEEeecCCCCCccCC---CC--CCCcceeeccCCccccccccccccCCCCCceEEEccCCCcch
Q 003104 553 FFSLP--SSINQLLKLKILCLEKCRNLKSLP---EL--PPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVE 625 (847)
Q Consensus 553 l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp---~l--p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~ 625 (847)
+.+.. .+...+|.+-.|+|+.+. +.++. ++ .++|..|.+.+.|-+..+... ....+.++..++++.
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~------err~llIaRL~~v~v 283 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGG------ERRFLLIARLTKVQV 283 (418)
T ss_pred ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCC------cceEEEEeeccceEE
Confidence 87543 355678888889998773 43332 22 256666666666555555431 224566888999988
Q ss_pred hhhh
Q 003104 626 DQVS 629 (847)
Q Consensus 626 l~~~ 629 (847)
|+.+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 8766
No 65
>PF13173 AAA_14: AAA domain
Probab=97.53 E-value=0.00013 Score=67.84 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++.|.|+.|+||||+++.++.+.. .-+..+++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 6899999999999999999998655 334445554
No 66
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.52 E-value=0.00029 Score=73.36 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=59.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------h
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV--------H 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~--------~ 84 (847)
+-++|.|-.|.||||||+.++++++.+|+..|++..+.|..+ ...++.+++...-..++..-+ .+. .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~--Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR--EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH--HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 578999999999999999999999989988888776654332 233444444332100111100 111 1
Q ss_pred hhHHHHHHHh--c-CCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--C-RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~-~kk~LlVLDDV~~~~~ 111 (847)
..+-.+.|++ + +|.||+|+||+....+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 1223455666 3 8999999999865443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=9.3e-06 Score=81.52 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=30.8
Q ss_pred cccccCcCCCEEEcCCCCCCCCCCC-----CCCCCcCcEeeccCcc
Q 003104 345 KGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCT 385 (847)
Q Consensus 345 ~~~~~l~~L~~L~L~~~~~l~~~p~-----~~~l~~L~~L~L~~c~ 385 (847)
+.+-++|+|+..+||.|.+....|. ++..++|++|.|++|.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 3455788888888888877766653 6778888888888774
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=3.6e-05 Score=91.16 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=100.5
Q ss_pred CCCcEEeccCCCCccc-cCccc-cCCCCccEEEecCccCC-CcCCccccCCCcccEEEecCccccccCccccCCCCCCEE
Q 003104 398 KRLILLNLKDCRNLVS-FPKNV-CLMKSLKILCLCGCLKL-EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIF 474 (847)
Q Consensus 398 ~~L~~L~L~~c~~l~~-lp~~i-~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 474 (847)
.+|++|++++...... -|..+ ..+|+|++|.+++-... ..+.....++++|..||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677777777443322 12222 34789999999874332 23344457889999999999999988 788999999999
Q ss_pred EeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCC-CC----cccCCCCCCCEEECc
Q 003104 475 SLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA-IP----SDIGSLFSLEAIDLS 549 (847)
Q Consensus 475 ~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~-lp----~~l~~l~sL~~L~Ls 549 (847)
.+.+-..... ..+-.+-.+++|+.||+|......+. +. +.-..||+|+.||.|
T Consensus 201 ~mrnLe~e~~----------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 201 SMRNLEFESY----------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccCCCCCch----------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 8877442210 12233667899999999987654322 11 122348899999999
Q ss_pred CCCCc--ccchhhhcCCCCCEEeecCC
Q 003104 550 GNNFF--SLPSSINQLLKLKILCLEKC 574 (847)
Q Consensus 550 ~n~l~--~lp~~i~~l~~L~~L~L~~c 574 (847)
++.+. .+-..+..-|+|+.+..-+|
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 98776 33333455566666555444
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0021 Score=70.64 Aligned_cols=146 Identities=24% Similarity=0.254 Sum_probs=89.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCc--eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh-
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL- 94 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~~F~~--~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L- 94 (847)
+-|+|..|.|||+.++.|.+++...-.. .+++. .-.-.....+..+++.++. +....-+...+.-..+.+.+
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSKILNKLG-KVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHH
Confidence 8899999999999999999987766433 46664 2334456677778888743 22222234445566777777
Q ss_pred -cCCcEEEEEcCCCCHHHHHHHhcCCCeeEecccccCCCHHHHHHHHHHHhcCCccccc--eeeeee-----ccCCChhh
Q 003104 95 -CRKRVLVILDDVDQLEQLQALVGNHDWFVLGSFLCGRSVEEWKSALNRLQEAPNEKVL--KVLRIS-----YDGLDRRD 166 (847)
Q Consensus 95 -~~kk~LlVLDDV~~~~~l~~L~~~~~w~~lgs~L~~~~~~~W~~~l~~L~~~~~~~i~--~~L~~S-----Yd~L~~~~ 166 (847)
+++.+.||||+++... .++. +.+-.|-..+...-. .++.++ -+.|++..
T Consensus 120 ~~~~~~IvvLDEid~L~-------------------~~~~----~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 120 KKGKTVIVILDEVDALV-------------------DKDG----EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred hcCCeEEEEEcchhhhc-------------------cccc----hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 4589999999997432 1111 233333222221100 111111 23567777
Q ss_pred HHHhheeeeccCCCCHHHHHHHHhh
Q 003104 167 KEIFLDIACFFKGKDEDRVRKKLDS 191 (847)
Q Consensus 167 k~~FL~~a~F~~~~~~~~l~~~~~~ 191 (847)
+.-|-..-+.|..|+.+++..++..
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHH
Confidence 7777777788889988887777763
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00018 Score=52.83 Aligned_cols=40 Identities=30% Similarity=0.560 Sum_probs=34.8
Q ss_pred CCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc
Q 003104 516 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP 557 (847)
Q Consensus 516 ~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp 557 (847)
++|++|++++|++. .+|..++++++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999987 58888999999999999999999876
No 71
>PRK08118 topology modulation protein; Reviewed
Probab=97.29 E-value=0.00019 Score=70.15 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=27.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh---ccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK---DQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~---~~F~~~~~v 49 (847)
+.|.|+|++|.||||+|+.++++.. -+||...|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3588999999999999999999754 347777753
No 72
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.29 E-value=0.0027 Score=79.89 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=49.9
Q ss_pred ccCCChhhHHHhheeeeccCCCCHHHHHHHHhhCCCChhhhHHHHhhcCceeEe-C---CeEeehHHHHHHHHHHhhhc
Q 003104 159 YDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-N---NKLWMHDLLQEMGWEIVREH 233 (847)
Q Consensus 159 Yd~L~~~~k~~FL~~a~F~~~~~~~~l~~~~~~~g~~~~~~l~~L~~k~Li~~~-~---~~~~mHdll~~~~~~i~~~e 233 (847)
++.||+..+..++..|+++ ..+.+-+..+.. .. .....++.|.+.+++... + ..+.+|++++++.+.-...+
T Consensus 260 ~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~-~~-~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR-SMNDALIVRVTG-EE-NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC-CC-cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 6789999999999999986 444443333332 11 124568899999997542 2 25889999999988876443
No 73
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00068 Score=63.48 Aligned_cols=88 Identities=22% Similarity=0.096 Sum_probs=46.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~ 95 (847)
+.+.|+|.+|+||||+|+.+...+.......+++. . +........+.. .. .................+.++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID-G---EDILEEVLDQLL--LI-IVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC-C---EEccccCHHHHH--hh-hhhccCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987665542334333 1 111100001100 11 11111111222223344445555
Q ss_pred CCc-EEEEEcCCCCHH
Q 003104 96 RKR-VLVILDDVDQLE 110 (847)
Q Consensus 96 ~kk-~LlVLDDV~~~~ 110 (847)
..+ .+|++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 544 999999997554
No 74
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00063 Score=72.86 Aligned_cols=78 Identities=33% Similarity=0.460 Sum_probs=50.9
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHH
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~ 91 (847)
+..+.-+-.||++|+||||||+.+-......|.... ....+++++++.+-.. -+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s--------Av~~gvkdlr~i~e~a------------------~~ 98 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS--------AVTSGVKDLREIIEEA------------------RK 98 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec--------cccccHHHHHHHHHHH------------------HH
Confidence 345666669999999999999999998777765321 1134455554433222 12
Q ss_pred HHhcCCcEEEEEcCCCC--HHHHHHH
Q 003104 92 WRLCRKRVLVILDDVDQ--LEQLQAL 115 (847)
Q Consensus 92 ~~L~~kk~LlVLDDV~~--~~~l~~L 115 (847)
.+..++|.+|.+|.|.. ..|-+.+
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh
Confidence 34568999999999963 3444444
No 75
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.0011 Score=67.78 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=77.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh--
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL-- 94 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L-- 94 (847)
.++|+|..|.||||+++.+.....++|+....++.... ... -..+-..-+..+...+..+ .........+.+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n--~~~-~~~i~p~~i~~~~~~e~le-~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYN--NEY-YKYIWPDHIFKVFDKEELE-YILIRQKEKIEKYIKK 90 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCc--hhh-hhhcchhhccccccHHHHH-HHHHHHHHHHHHHhhh
Confidence 57799999999999999999999999965544432111 100 0001011000000000000 00111112222222
Q ss_pred --cCC---cEEEEEcCCCCHHHHHHHhcCCCeeEecccccCCCHHHHHHHHHHHhcCCccccc-eeeeeeccCCChhhHH
Q 003104 95 --CRK---RVLVILDDVDQLEQLQALVGNHDWFVLGSFLCGRSVEEWKSALNRLQEAPNEKVL-KVLRISYDGLDRRDKE 168 (847)
Q Consensus 95 --~~k---k~LlVLDDV~~~~~l~~L~~~~~w~~lgs~L~~~~~~~W~~~l~~L~~~~~~~i~-~~L~~SYd~L~~~~k~ 168 (847)
..| ++|||+||+.+. .+ + ...+..... +..+-++. =.+.-+|-+||...|.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~-~~------------------k-~~~l~~~~~---~gRH~~is~i~l~Q~~~~lp~~iR~ 147 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK-KL------------------K-SKILRQFFN---NGRHYNISIIFLSQSYFHLPPNIRS 147 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc-hh------------------h-hHHHHHHHh---cccccceEEEEEeeecccCCHHHhh
Confidence 234 899999998531 00 1 112333332 22222332 2466788999999988
Q ss_pred HhheeeeccCCCCHHHHHHHHhhCC
Q 003104 169 IFLDIACFFKGKDEDRVRKKLDSCG 193 (847)
Q Consensus 169 ~FL~~a~F~~~~~~~~l~~~~~~~g 193 (847)
-.-|+.||. .....+..+|..-+
T Consensus 148 n~~y~i~~~--~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 148 NIDYFIIFN--NSKRDLENIYRNMN 170 (241)
T ss_pred cceEEEEec--CcHHHHHHHHHhcc
Confidence 888888884 34555666666543
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.03 E-value=0.00087 Score=69.20 Aligned_cols=47 Identities=34% Similarity=0.470 Sum_probs=31.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++|.+++..+ ..+.+.|+|..|+|||||++.+.+.....-...+|+.
T Consensus 9 ~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 9 EKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp HHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred HHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 3455555443 3468889999999999999999997744323445554
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.00 E-value=0.0016 Score=67.18 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=33.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++.+++.. ..-+.|-|+|..|+||||+|++++++...+....+|+.
T Consensus 27 ~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 27 AALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred HHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 344555432 33468889999999999999999997665554455554
No 78
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.97 E-value=0.0039 Score=64.26 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.2
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.+-.+|..+-..-+++-|+|.+|.||||+|..+.......-+.++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566667666566689999999999999999999876666667788887
No 79
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0031 Score=68.40 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=55.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEecccccccCChHHHHHHHHHHHhcCC--Cccc--cchhhhHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMER--DLII--WDVHKGINLI 90 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~--~~~~--~~~~~~~~~i 90 (847)
+-++|+|..|.|||||++.+.+.+..+- +..+++.-+.+ +.....++++.+...+.... .... .........+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999876653 44434333322 23345667777666543211 0000 0111112222
Q ss_pred HHHh--cCCcEEEEEcCCCCHHH
Q 003104 91 RWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 91 ~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
-+++ ++|+++||+|++....+
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHHHH
Confidence 3333 68999999999976554
No 80
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00041 Score=82.36 Aligned_cols=131 Identities=17% Similarity=0.190 Sum_probs=93.6
Q ss_pred CCCCccEEEecCccCCC-cCCccc-cCCCcccEEEecCcccc--ccCccccCCCCCCEEEeCCCCCCCCCcCcchhhccc
Q 003104 420 LMKSLKILCLCGCLKLE-KLPQDL-GEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSL 495 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~-~lp~~l-~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l 495 (847)
.-.+|++|+++|..... .-|..+ ..+|+|+.|.+.+-.+. ++-.-..++++|..||+++++...
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n------------ 187 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN------------ 187 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC------------
Confidence 34689999999854432 223333 35799999999987665 444445778999999999986432
Q ss_pred ccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc-------hhhhcCCCCCE
Q 003104 496 LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-------SSINQLLKLKI 568 (847)
Q Consensus 496 ~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp-------~~i~~l~~L~~ 568 (847)
+..++.+++|+.|.+.+-.+....--..+.+|++|+.||+|......-+ ++-..||+|+.
T Consensus 188 -------------l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 188 -------------LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF 254 (699)
T ss_pred -------------cHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence 3336788889998888776554333446788999999999998655333 23356999999
Q ss_pred EeecCCC
Q 003104 569 LCLEKCR 575 (847)
Q Consensus 569 L~L~~c~ 575 (847)
||.++..
T Consensus 255 LDcSgTd 261 (699)
T KOG3665|consen 255 LDCSGTD 261 (699)
T ss_pred EecCCcc
Confidence 9999764
No 81
>PRK06893 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0014 Score=67.74 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..+.|||..|+|||+||+++.+.+..+...+.|+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 57899999999999999999998766666667776
No 82
>PRK07261 topology modulation protein; Provisional
Probab=96.84 E-value=0.0045 Score=60.74 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|.|+|++|.||||||+.+-...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987753
No 83
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.0048 Score=65.13 Aligned_cols=74 Identities=27% Similarity=0.259 Sum_probs=44.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~ 95 (847)
.-+.|||..|+|||.||.++++.+..+--.++|+. ...+...+.... ... .......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~-~~~------~~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTY-KSS------GKEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHH-hcc------ccccHHHHHHHhc
Confidence 35789999999999999999998876644444544 122333333321 111 0111233445565
Q ss_pred CCcEEEEEcCCC
Q 003104 96 RKRVLVILDDVD 107 (847)
Q Consensus 96 ~kk~LlVLDDV~ 107 (847)
.-. ||||||+.
T Consensus 178 ~~d-lLviDDlg 188 (268)
T PRK08116 178 NAD-LLILDDLG 188 (268)
T ss_pred CCC-EEEEeccc
Confidence 444 78999984
No 84
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.80 E-value=0.0048 Score=65.70 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=66.5
Q ss_pred hHHHHhHhcCCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHh-cCCCcc
Q 003104 2 EKMNGYLEAGLDDV-RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDLI 79 (847)
Q Consensus 2 ~~i~~lL~~~~~~v-~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l-~~~~~~ 79 (847)
..+.+++...+..+ ..|-|+|-+|.|||.+.|++++... ...+|++ .-..+..+.+.++|+.++. .+++..
T Consensus 16 ~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~ 88 (438)
T KOG2543|consen 16 RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKILNKSQLADKDGD 88 (438)
T ss_pred HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHHHHhccCCCchh
Confidence 34566666655533 4558999999999999999999763 3468887 4455677788888888863 333322
Q ss_pred ccc-----hhhhHHHHHH--Hhc--CCcEEEEEcCCCCHHHHH
Q 003104 80 IWD-----VHKGINLIRW--RLC--RKRVLVILDDVDQLEQLQ 113 (847)
Q Consensus 80 ~~~-----~~~~~~~i~~--~L~--~kk~LlVLDDV~~~~~l~ 113 (847)
.-. ..+....++. ... +++++||||+++...+.+
T Consensus 89 ~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 89 KVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred hhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 111 1111122222 222 569999999998666543
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.77 E-value=0.0025 Score=59.21 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|-|+|..|.||||+|+.+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999875
No 86
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.76 E-value=0.0012 Score=60.53 Aligned_cols=23 Identities=52% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
||+|.|++|+||||+|+.+-++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999998875
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.73 E-value=0.0038 Score=69.34 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=49.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc--cCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhh--HHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKG--INLIR 91 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~--~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~--~~~i~ 91 (847)
+.|-++||+|+||||+|+++.+.+.. .|+...||. +++......... ... ...... ....+ .+.++
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~----G~r-P~~vgy-~~~~G~f~~~~~ 264 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQ----GYR-PNGVGF-RRKDGIFYNFCQ 264 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhc----ccC-CCCCCe-EecCchHHHHHH
Confidence 57778999999999999999997654 566777777 444433322221 110 011111 01111 12222
Q ss_pred HHhc--CCcEEEEEcCCCCHH
Q 003104 92 WRLC--RKRVLVILDDVDQLE 110 (847)
Q Consensus 92 ~~L~--~kk~LlVLDDV~~~~ 110 (847)
+.-. ++++.+|+|+++...
T Consensus 265 ~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 265 QAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred HHHhcccCCcEEEEehhhccC
Confidence 2222 468999999998554
No 88
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.73 E-value=0.0072 Score=71.34 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-----CCc--eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-----F~~--~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~ 87 (847)
..++-|+|++|.|||+.++.|.+++... ... .++|. ...-.....+...|..++.+..........+..
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evL 856 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKIL 856 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccCCHHHHHHHHHHHHcCCCCCccccHHHHH
Confidence 4678899999999999999999866432 121 22332 111233455566666665333322222223334
Q ss_pred HHHHHHhc---CCcEEEEEcCCCCH
Q 003104 88 NLIRWRLC---RKRVLVILDDVDQL 109 (847)
Q Consensus 88 ~~i~~~L~---~kk~LlVLDDV~~~ 109 (847)
..+.+.+. +...+||||||+..
T Consensus 857 erLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHhhhhcccccceEEEeehHhhh
Confidence 44444442 22458999999844
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.72 E-value=0.0036 Score=65.82 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=47.0
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccC-ChHHHHHHHHHHHhcCCCccccchhhhHHH
Q 003104 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (847)
Q Consensus 11 ~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~-~l~~l~~~il~~~l~~~~~~~~~~~~~~~~ 89 (847)
+.+.+.-+-.||++|.||||||+.+-+.-+.+- .-||+ .|... +..+ .++++++..+
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~d-vR~ife~aq~--------------- 215 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTND-VRDIFEQAQN--------------- 215 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHH-HHHHHHHHHH---------------
Confidence 346677788999999999999999998655442 34555 33322 2222 2233333111
Q ss_pred HHHHhcCCcEEEEEcCCCCH
Q 003104 90 IRWRLCRKRVLVILDDVDQL 109 (847)
Q Consensus 90 i~~~L~~kk~LlVLDDV~~~ 109 (847)
...+.+||..+.+|.|..-
T Consensus 216 -~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 216 -EKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred -HHhhhcceeEEEeHHhhhh
Confidence 1235678899999999643
No 90
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.0081 Score=62.18 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
...+-++|.+|+|||+||.++.+.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998766545555554
No 91
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.68 E-value=0.0033 Score=71.00 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.....+-|+|++|+||||+|+++.+.....|
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4456788999999999999999999765544
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.63 E-value=0.02 Score=58.57 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCc--eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~--~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~ 91 (847)
....+-|||..|.|||.|.+++++.+...... ++|+. .......+...+-. .....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhh
Confidence 34567899999999999999999987665432 33443 22333344444221 1234566
Q ss_pred HHhcCCcEEEEEcCCCC
Q 003104 92 WRLCRKRVLVILDDVDQ 108 (847)
Q Consensus 92 ~~L~~kk~LlVLDDV~~ 108 (847)
++++. -=+|++|||+.
T Consensus 93 ~~~~~-~DlL~iDDi~~ 108 (219)
T PF00308_consen 93 DRLRS-ADLLIIDDIQF 108 (219)
T ss_dssp HHHCT-SSEEEEETGGG
T ss_pred hhhhc-CCEEEEecchh
Confidence 77774 44668999963
No 93
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0069 Score=59.74 Aligned_cols=35 Identities=43% Similarity=0.648 Sum_probs=31.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+|.|.|+.|.||||+|+.+++++..++...+++.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 58999999999999999999999988888877774
No 94
>PTZ00202 tuzin; Provisional
Probab=96.62 E-value=0.011 Score=64.69 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=56.1
Q ss_pred hHHHHhHhcCC-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc
Q 003104 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (847)
Q Consensus 2 ~~i~~lL~~~~-~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~ 80 (847)
+++...|...+ ...+++.|.|++|.|||||++.+..... ..+++.|.+ +..++...++.++ +... .
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~AL-GV~p--~ 338 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKAL-GVPN--V 338 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHc-CCCC--c
Confidence 34555665333 3357999999999999999999997654 225554332 5578888888884 3211 1
Q ss_pred cchhhhHHHHHHHh------cCCcEEEEEc
Q 003104 81 WDVHKGINLIRWRL------CRKRVLVILD 104 (847)
Q Consensus 81 ~~~~~~~~~i~~~L------~~kk~LlVLD 104 (847)
....+....|.++| ++++.+||+-
T Consensus 339 ~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 339 EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11233444444443 3778888863
No 95
>PRK12377 putative replication protein; Provisional
Probab=96.61 E-value=0.0075 Score=62.58 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
...+.|+|..|+|||+||.++.+.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876665566665
No 96
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.57 E-value=0.00055 Score=69.14 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCCCEEeccCCCCCCCCCC----cccCCCCCCCEEECcCCCCccc-----chhhhcCCCCCEEeecCC
Q 003104 516 SSLQTLDLSDCNLLEGAIP----SDIGSLFSLEAIDLSGNNFFSL-----PSSINQLLKLKILCLEKC 574 (847)
Q Consensus 516 ~~L~~L~Ls~~~l~~~~lp----~~l~~l~sL~~L~Ls~n~l~~l-----p~~i~~l~~L~~L~L~~c 574 (847)
.+|+.+.+..|.+-...+. ..+..+.+|+.|+|..|-|+.. ...+..-+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 3455555555554221110 1223455666666666655521 122334445666666666
No 97
>PRK07667 uridine kinase; Provisional
Probab=96.56 E-value=0.0044 Score=62.12 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++|...+..-.....+|||-|.+|.||||+|+.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45666776666667999999999999999999999977643
No 98
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.52 E-value=0.00013 Score=66.16 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred CcceEEecCCCCCCCCCCC--CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc
Q 003104 307 NLRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 384 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c 384 (847)
.|...++++|.++++|..| .++.++.|+|++|.|..+|..+..++.||.|+++.|.+...+.-+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4555667777777777777 45577888888888888888788888888888887766655555555666666666654
Q ss_pred c
Q 003104 385 T 385 (847)
Q Consensus 385 ~ 385 (847)
.
T Consensus 134 a 134 (177)
T KOG4579|consen 134 A 134 (177)
T ss_pred c
Confidence 3
No 99
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.052 Score=63.96 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.+-++|..|+||||+|+.+-+.+-
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35667999999999999999888653
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.49 E-value=0.13 Score=51.26 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCe-EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 3 KMNGYLEAGLDDV-RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 3 ~i~~lL~~~~~~v-~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+.+..+ .+ +.+-++|..|+||||+|+.+-+.+.
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555433 34 6788999999999999999988764
No 101
>PRK06762 hypothetical protein; Provisional
Probab=96.49 E-value=0.013 Score=57.08 Aligned_cols=24 Identities=50% Similarity=0.576 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++|.|.|+.|.||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 102
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.47 E-value=0.00029 Score=81.54 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=14.3
Q ss_pred CcCCCEEEcCCCCCCCCC---CCCCCCCcCcEeeccC
Q 003104 350 LKELKFMNLSHSCNLIRT---PDFTGVPNLERLNLEG 383 (847)
Q Consensus 350 l~~L~~L~L~~~~~l~~~---p~~~~l~~L~~L~L~~ 383 (847)
++.|+.|.+..+...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 444444444444333321 1233444444444444
No 103
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.0053 Score=63.53 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=29.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..|.|||..|+|||+||+++.+....+.....|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46999999999999999999998776655566765
No 104
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.0085 Score=68.89 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh--ccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~--~~F~~~~~v~ 50 (847)
-+.+-++|+.|+||||+|+++.+.+. +.+...|+.|
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 36778999999999999999999764 2344456655
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.45 E-value=0.0054 Score=73.34 Aligned_cols=31 Identities=39% Similarity=0.617 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
..+.-+-|||++|+||||+|+++.+....+|
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4455678999999999999999999876555
No 106
>PHA00729 NTP-binding motif containing protein
Probab=96.44 E-value=0.011 Score=59.82 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+...|.|.|.+|+||||||.++-+++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998754
No 107
>PRK09183 transposase/IS protein; Provisional
Probab=96.43 E-value=0.011 Score=62.10 Aligned_cols=34 Identities=29% Similarity=0.211 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
..|.|+|..|+||||||.++......+-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5688999999999999999988654433333344
No 108
>PRK04195 replication factor C large subunit; Provisional
Probab=96.41 E-value=0.051 Score=62.78 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=29.2
Q ss_pred hHHHHhHhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 2 ~~i~~lL~~~--~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+++..|+..- ....+.+-|+|+.|+||||+|+++.+.+.
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455666432 12267899999999999999999999763
No 109
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.041 Score=61.05 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|+.|+||||+|+++.+.+.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999998764
No 110
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.40 E-value=0.0018 Score=65.69 Aligned_cols=85 Identities=27% Similarity=0.362 Sum_probs=55.2
Q ss_pred CCCCCCCCCEEeccCC--CCCCCCCCcccCCCCCCCEEECcCCCCc---ccchhhhcCCCCCEEeecCCCCCccC-----
Q 003104 511 RFTGLSSLQTLDLSDC--NLLEGAIPSDIGSLFSLEAIDLSGNNFF---SLPSSINQLLKLKILCLEKCRNLKSL----- 580 (847)
Q Consensus 511 ~l~~l~~L~~L~Ls~~--~l~~~~lp~~l~~l~sL~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l----- 580 (847)
.+..+++|+.|.++.| +.. +.++.....+++|++|++++|++. +++ .+..+.+|..|++.+|.-.+.-
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHH
Confidence 3556778888888888 433 345555566688999999999776 333 4567788888888888754411
Q ss_pred -CCCCCCcceeeccCCcc
Q 003104 581 -PELPPEIVFVGAEDCTS 597 (847)
Q Consensus 581 -p~lp~sL~~L~i~~c~~ 597 (847)
-.+.++|++|+-.++..
T Consensus 138 vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHHhhhhccccccccCC
Confidence 12345666665544433
No 111
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.40 E-value=0.012 Score=59.75 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.8
Q ss_pred hHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 7 YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 7 lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+|..|-..=+++-|+|.+|.||||+|..+......+.+.++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45555555689999999999999999998876666677889987
No 112
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.008 Score=60.13 Aligned_cols=30 Identities=47% Similarity=0.596 Sum_probs=27.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+.+.+|||-|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 567899999999999999999999988766
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.085 Score=61.04 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|+.|+||||+|+.+.+.+.
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35677999999999999999998654
No 114
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.34 E-value=0.007 Score=59.00 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCC-CCcCcEeeccCcccccccc--ccccCCCCCcEEe
Q 003104 328 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTG-VPNLERLNLEGCTRLLEVH--QSVGTLKRLILLN 404 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~-l~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~ 404 (847)
.+...+||++|.+..++ .+..++.|.+|.|.+|.++..-|.+.. +++|..|.|.+|.. .++- .-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceee
Confidence 34455566666555542 345566666666666666655555433 45566666666532 2211 2344556666666
Q ss_pred ccCCCCcccc---CccccCCCCccEEEecCc
Q 003104 405 LKDCRNLVSF---PKNVCLMKSLKILCLCGC 432 (847)
Q Consensus 405 L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c 432 (847)
+-+|.....- --.++.+++|++|+..+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6665422210 012456777788777653
No 115
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.31 E-value=0.015 Score=60.23 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=35.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------CCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~------F~~~~~v~ 50 (847)
+.+-.+|..+-..-+++.|+|.+|.||||+|..+.-..... -..++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34555666555666899999999999999999886432211 36788887
No 116
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.30 E-value=0.031 Score=57.55 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=38.0
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC------CceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F------~~~~~v~ 50 (847)
+.+..+|..+-..-+++.|+|.+|.||||+|..+--....+- ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 456677766666678999999999999999999876554444 5678877
No 117
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.29 E-value=0.012 Score=60.25 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=37.9
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.+-.+|..|-..=+++.|.|.+|+||||+|..+......+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566667656566689999999999999999998876655555667775
No 118
>PRK08233 hypothetical protein; Provisional
Probab=96.28 E-value=0.014 Score=57.86 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..+|+|.|.+|.||||+|+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999988653
No 119
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.00028 Score=81.58 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=20.2
Q ss_pred CCcCcEeeccCcccccc--ccccccCCCCCcEEeccC
Q 003104 373 VPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKD 407 (847)
Q Consensus 373 l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~L~~ 407 (847)
+++|+.|.+.+|..+.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56666666666655544 334445556666666655
No 120
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.21 E-value=0.00043 Score=62.93 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 514 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 514 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
.++.++.|+|++|.+. .+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|.
T Consensus 75 kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 75 KFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3445666777777765 47777777888888888888888777777777777777777764
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.20 E-value=0.009 Score=61.91 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..+.+-|||+.|+|||+||+++.+....+-..+.|+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3457889999999999999999997765544455665
No 122
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.032 Score=62.87 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|..|+||||+|+.+.+.+-
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999988654
No 123
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.16 E-value=0.012 Score=58.99 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+||.+||+.|+||||.+-++..+.+.+-...+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 68999999999999988888776665544455554
No 124
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0061 Score=57.24 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEE-Eecc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFL-ANVR 53 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v-~~~~ 53 (847)
..-|+|-||+|+||||+++.+-+.++.. |...-|+ ..+|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3468999999999999999999988766 6544443 3344
No 125
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.15 E-value=0.01 Score=57.83 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=54.3
Q ss_pred cCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEec
Q 003104 351 KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLC 430 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 430 (847)
.+...+||++|. +...+.|..++.|.+|.|.+|.+...- +.+. ..+++|++|.+.
T Consensus 42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~-----------------------~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRID-PDLD-----------------------TFLPNLKTLILT 96 (233)
T ss_pred cccceecccccc-hhhcccCCCccccceEEecCCcceeec-cchh-----------------------hhccccceEEec
Confidence 345566666653 344555666666666666655433222 2222 223445555555
Q ss_pred CccCCC--cCCccccCCCcccEEEecCccccccCc----cccCCCCCCEEEeCCCC
Q 003104 431 GCLKLE--KLPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 431 ~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~~~ 480 (847)
+|+... .+ .-+..++.|++|.+-+|.++.-.. .+..+++|+.|++.+-.
T Consensus 97 nNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Ccchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 544321 11 124455667777777776664332 35667777777776643
No 126
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.15 E-value=0.0046 Score=62.06 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987654
No 127
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.059 Score=58.52 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+..-++|+.|+||||+|++++..+
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999999965
No 128
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0027 Score=64.40 Aligned_cols=79 Identities=25% Similarity=0.237 Sum_probs=35.7
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCC--Ccc-ccccccccCcCCCEEEcCCCCCC--CCCCCCCCCCcCcEeec
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS--RIK-YLWKGIKPLKELKFMNLSHSCNL--IRTPDFTGVPNLERLNL 381 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~--~l~-~l~~~~~~l~~L~~L~L~~~~~l--~~~p~~~~l~~L~~L~L 381 (847)
.|..|+..+..+.++.....+++|+.|.++.| ++. .++--..++++|++|+|+.|++. ..++.+..+.||..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 34444444444444433334455555555555 222 33333344455555555555432 12223444445555555
Q ss_pred cCcc
Q 003104 382 EGCT 385 (847)
Q Consensus 382 ~~c~ 385 (847)
..|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 5543
No 129
>PRK06526 transposase; Provisional
Probab=96.10 E-value=0.012 Score=61.61 Aligned_cols=28 Identities=29% Similarity=0.124 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-+-|-|+|.+|+|||+||.++-.....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568899999999999999998866544
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.10 E-value=0.019 Score=65.10 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.-+-|||..|+|||+||+++.+.+..+--...|+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 46789999999999999999998765433344543
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=96.10 E-value=0.017 Score=59.75 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=28.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..+.|||..|+|||.||+++.+.+..+-..++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 67899999999999999999997765545566665
No 132
>PRK08181 transposase; Validated
Probab=96.09 E-value=0.02 Score=60.23 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=28.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+-|-|+|..|+|||.||.++-+.+..+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999997766655556654
No 133
>PLN03025 replication factor C subunit; Provisional
Probab=96.08 E-value=0.12 Score=56.19 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..-+-+||..|+||||+|+++.+.+..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 333569999999999999999987643
No 134
>PRK06696 uridine kinase; Validated
Probab=96.07 E-value=0.0093 Score=61.31 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+|...+. .......+|||.|.+|.||||+|+.+.+.+...
T Consensus 9 ~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 9 ELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3444443 245678899999999999999999999977644
No 135
>PRK06921 hypothetical protein; Provisional
Probab=96.02 E-value=0.026 Score=59.50 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v~ 50 (847)
..-+.++|..|+|||+||.++.+.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 44556665
No 136
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.01 E-value=0.0055 Score=56.64 Aligned_cols=22 Identities=59% Similarity=0.830 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|+|.|..|+||||+|+.+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999975
No 137
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.01 E-value=0.014 Score=66.74 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
..-+-|+|..|+|||+||+++.+.+..++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~ 177 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP 177 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 356889999999999999999998877653
No 138
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.01 E-value=0.017 Score=57.01 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-+-+.|+|..|+|||.||.++-+.+..+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999987655444556665
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.00 E-value=0.015 Score=65.72 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
..+-|+|..|+|||+||+++.+.+..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999887664
No 140
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.01 Score=55.99 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|-|+|..|+|||+||+.+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.96 E-value=0.012 Score=66.91 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC--ceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~--~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
..-+-|||..|+|||+||+++.+.+..+.. ...|+. ...+..++...+..+ . ....++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~------~----~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG------K----LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc------c----HHHHHH
Confidence 345889999999999999999998766543 234443 122334444432111 1 223444
Q ss_pred HhcCCcEEEEEcCCCCHH-----H------HHHHhcCCCeeEecccccCCCHHHHHHHHHHHh
Q 003104 93 RLCRKRVLVILDDVDQLE-----Q------LQALVGNHDWFVLGSFLCGRSVEEWKSALNRLQ 144 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~~-----~------l~~L~~~~~w~~lgs~L~~~~~~~W~~~l~~L~ 144 (847)
+++.+--+|++||++... | ++.+.......++++. ..+.+|....+.+.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd---~~p~~l~~l~~rL~ 249 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD---REPQKLSEFQDRLV 249 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC---CCHHHHHHHHHHHh
Confidence 554445588999997431 1 1112222222333322 56777877666654
No 142
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.93 E-value=0.017 Score=55.72 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++.|+|.+|.||||+|+.+......+-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999987766555566665
No 143
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.93 E-value=0.0072 Score=61.49 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
....+|||.|.+|.||||||+.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999976
No 144
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.07 Score=59.97 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|+.|+||||+|+++-+.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999988664
No 145
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.91 E-value=0.047 Score=60.30 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=37.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++-++|..+-..-.++.|.|.+|+|||||+..+...+..+-...+|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556666655555579999999999999999999887666555667765
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.88 E-value=0.012 Score=67.06 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+-|-++|++|.|||++||++++.+..+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4568899999999999999999987655
No 147
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.81 E-value=0.013 Score=62.95 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.-.+.++|||+.|.|||.+|++|+++....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 4468999999999999999999999876543
No 148
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.80 E-value=0.0099 Score=60.37 Aligned_cols=28 Identities=43% Similarity=0.601 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..-.+|||+|.+|.||||||+++...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999999998654
No 149
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.80 E-value=0.043 Score=58.47 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.-++|+|+|.+|+||||++..+......
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999886643
No 150
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.027 Score=64.51 Aligned_cols=71 Identities=25% Similarity=0.302 Sum_probs=45.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecc-cccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR-EVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~-~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~ 95 (847)
-|-|.|..|+|||+||+++++.+... ..|++.-+. +......+..+|+.+-. .+.+.+.
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~~------------------vfse~~~ 492 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLNN------------------VFSEALW 492 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHHH------------------HHHHHHh
Confidence 46799999999999999999987643 333333221 01122335555554432 2334566
Q ss_pred CCcEEEEEcCCC
Q 003104 96 RKRVLVILDDVD 107 (847)
Q Consensus 96 ~kk~LlVLDDV~ 107 (847)
...-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 778899999986
No 151
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.77 E-value=0.014 Score=55.67 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=29.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.||-|.|..|.||||||+++..++...-....++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999988776666664
No 152
>PTZ00301 uridine kinase; Provisional
Probab=95.77 E-value=0.0083 Score=60.72 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
..+|||.|.+|.||||+|+.+.+++...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~ 32 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcC
Confidence 369999999999999999999988765543
No 153
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.038 Score=57.82 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
...-+.++|.+|+|||.||.++-+++...=-.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456889999999999999999998884434455655
No 154
>PRK08356 hypothetical protein; Provisional
Probab=95.69 E-value=0.036 Score=55.65 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=19.0
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVL 35 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~v 35 (847)
.+|+|.|+.|.||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.66 E-value=0.056 Score=56.93 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=65.8
Q ss_pred hHHHHhHhcC-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc------eeEEEecccccccCChHHHHHHHHHHHhc
Q 003104 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA------SSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (847)
Q Consensus 2 ~~i~~lL~~~-~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~------~~~v~~~~~~s~~~~l~~l~~~il~~~l~ 74 (847)
++++.+|..- .....-+-|||-+|+|||||++...+.....++. ++.|. .....+...+-..|+..+-.
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCc
Confidence 5677777653 3445678899999999999999998865444432 22232 55677888999999998633
Q ss_pred CCCccccchhhhHHHHHHHhcC-CcEEEEEcCCCC
Q 003104 75 ERDLIIWDVHKGINLIRWRLCR-KRVLVILDDVDQ 108 (847)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~L~~-kk~LlVLDDV~~ 108 (847)
.-. ...........+.+.|+. +-=+||+|.|.+
T Consensus 123 P~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 123 PYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 222 223334444445555543 334678899854
No 156
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.17 Score=58.24 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-+-++|..|+||||+|+.+.+.+-
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35778999999999999999999664
No 157
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.066 Score=58.57 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..++|+|+|.+|+||||++..+...+..+=....++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4589999999999999999999876654422334443
No 158
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.57 E-value=0.022 Score=61.74 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....+-|+|+.|+||||||+++.+.+...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34567799999999999999999876543
No 159
>PRK09087 hypothetical protein; Validated
Probab=95.56 E-value=0.022 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
+.+.|||..|+|||||++++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999988875
No 160
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.26 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.+-++|..|+||||+|+.+-+.+-
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36778999999999999999988654
No 161
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.55 E-value=0.021 Score=63.49 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.+-|-|+|++|+||||+|+++.+.....|
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 35588999999999999999999876554
No 162
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.28 Score=57.81 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-+.+-++|..|+||||+|+.+-+.+
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3678899999999999999998754
No 163
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.54 E-value=0.057 Score=58.07 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=29.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-+-|+|..|+|||.||.++.+.+..+--.+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456889999999999999999998776555566665
No 164
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.53 E-value=0.016 Score=59.88 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=27.4
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 11 ~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+.....+|||.|..|.|||||++.+.+.+...
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34668999999999999999999999876644
No 165
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.12 Score=59.95 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|+.|+||||+|+.+-+.+.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999988663
No 166
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.47 E-value=0.022 Score=64.55 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=56.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEEEecccccccCChHHHHHHHHHHHhcCC---Ccc-ccchhhhHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DLI-IWDVHKGINLI 90 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~---~~~-~~~~~~~~~~i 90 (847)
+-++|+|..|.|||||++.|-|.+.. +=++.+++..|.|-... +..+++.+-.++.... ... -.......-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE--Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE--VTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh--HHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997754 44666666666544332 1223332211111100 000 00112233345
Q ss_pred HHHh--cCCcEEEEEcCCCCHHHHHH
Q 003104 91 RWRL--CRKRVLVILDDVDQLEQLQA 114 (847)
Q Consensus 91 ~~~L--~~kk~LlVLDDV~~~~~l~~ 114 (847)
-+++ +++.|||++|++....+-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ArAyr 520 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRLGRAYN 520 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHHHHHHH
Confidence 5666 78999999999976655433
No 167
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.47 E-value=0.031 Score=63.55 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=44.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc--eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~--~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~ 93 (847)
.-+-|||..|.|||+|++++.+.+...... ++++. ...+..++...+-.. ......++++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 457899999999999999999977654322 23333 123444444442110 0123345555
Q ss_pred hcCCcEEEEEcCCCC
Q 003104 94 LCRKRVLVILDDVDQ 108 (847)
Q Consensus 94 L~~kk~LlVLDDV~~ 108 (847)
++ +--+||+||+..
T Consensus 204 ~~-~~dvLiIDDiq~ 217 (450)
T PRK14087 204 IC-QNDVLIIDDVQF 217 (450)
T ss_pred hc-cCCEEEEecccc
Confidence 55 345788999963
No 168
>PRK03839 putative kinase; Provisional
Probab=95.46 E-value=0.012 Score=58.35 Aligned_cols=24 Identities=46% Similarity=0.715 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.|.|.||.|.||||+|+++.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 169
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.095 Score=54.82 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=86.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh----ccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~----~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~ 91 (847)
|+|-++|++|.|||+|.|++..+++ +.+....-++ ++ -..|..+-+++ ... -+...-++|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in----shsLFSKWFsE----SgK---lV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN----SHSLFSKWFSE----SGK---LVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee----hhHHHHHHHhh----hhh---HHHHHHHHHH
Confidence 8999999999999999999999653 3343333333 21 12222222222 111 1223334555
Q ss_pred HHhcCC--cEEEEEcCCCCHHHHHHHhcCCCeeEecccccCCCHHHHH-------HHHHHHhcCCccccceeeeeeccCC
Q 003104 92 WRLCRK--RVLVILDDVDQLEQLQALVGNHDWFVLGSFLCGRSVEEWK-------SALNRLQEAPNEKVLKVLRISYDGL 162 (847)
Q Consensus 92 ~~L~~k--k~LlVLDDV~~~~~l~~L~~~~~w~~lgs~L~~~~~~~W~-------~~l~~L~~~~~~~i~~~L~~SYd~L 162 (847)
+.+.++ =+.+.+|.|.....-.. +...+..+.+-- ..+++|++. .++|-+.--+|
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~-----------s~~S~~EpsDaIRvVNalLTQlDrlK~~-----~NvliL~TSNl 306 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAART-----------SASSRNEPSDAIRVVNALLTQLDRLKRY-----PNVLILATSNL 306 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHH-----------hhhcCCCCchHHHHHHHHHHHHHHhccC-----CCEEEEeccch
Confidence 555554 45556798865433221 111121111111 223344444 35677777777
Q ss_pred ChhhHHHhheee--eccCCCCH-HHHHHHHhhCCCChhhhHHHHhhcCceeEe
Q 003104 163 DRRDKEIFLDIA--CFFKGKDE-DRVRKKLDSCGFNSDIGIRELLDKSLITIV 212 (847)
Q Consensus 163 ~~~~k~~FL~~a--~F~~~~~~-~~l~~~~~~~g~~~~~~l~~L~~k~Li~~~ 212 (847)
.+..-..|.|-| .|+-|..- ...-.++..| +.+|+..+.|...
T Consensus 307 ~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksc-------ieEL~~~gIi~~~ 352 (423)
T KOG0744|consen 307 TDSIDVAFVDRADIVFYVGPPTAEAIYEILKSC-------IEELISSGIILFH 352 (423)
T ss_pred HHHHHHHhhhHhhheeecCCccHHHHHHHHHHH-------HHHHHhcCeeeee
Confidence 777777787766 34555543 3344555554 7888888777654
No 170
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.34 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.+-++|..|+||||+|+.+-+.+-
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888999999999999999988653
No 171
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.33 Score=58.56 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-+.+-++|..|+||||+|+.+.+.+..
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 356679999999999999999997643
No 172
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.41 E-value=0.05 Score=59.55 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+.+-|+|++|+||||+|+++.+.+...
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 35667899999999999999999977543
No 173
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.023 Score=46.34 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+|+|.|..|.||||+|+++-+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 174
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.40 E-value=0.017 Score=58.04 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
+...-+-.||++|+||||||+.|-+.....|.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 45667789999999999999999998877664
No 175
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.21 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-+||+.|+||||+|+++.+.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999988653
No 176
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.38 E-value=0.028 Score=60.95 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=28.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.-+.++|..|+|||+||.++.+.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999997765544556665
No 177
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.37 E-value=0.13 Score=48.42 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|-++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987544
No 178
>PRK04040 adenylate kinase; Provisional
Probab=95.37 E-value=0.016 Score=57.71 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|+|+.|.||||+|+.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.32 E-value=0.043 Score=55.21 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=52.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE-ecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA-NVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~-~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
.+|.|+|..|.||||+++++...+......+++.- +..|.... ... .+. ...... .+.....+.++..|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~~----~~i----~q~~vg-~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SKR----SLI----NQREVG-LDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Ccc----cee----eecccC-CCccCHHHHHHHHh
Confidence 37899999999999999999887766655554432 21111100 000 011 011111 11223456777888
Q ss_pred cCCcEEEEEcCCCCHHHHHH
Q 003104 95 CRKRVLVILDDVDQLEQLQA 114 (847)
Q Consensus 95 ~~kk~LlVLDDV~~~~~l~~ 114 (847)
+...=.|++|++.+.+.++.
T Consensus 72 r~~pd~ii~gEird~e~~~~ 91 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRL 91 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHH
Confidence 77777999999977765443
No 180
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.15 E-value=0.72 Score=50.06 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+..++.. .....+-|+|..|.||||+|+++.+.+...
T Consensus 28 ~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 28 RLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred HHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34444443 233457899999999999999999976443
No 181
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.14 E-value=0.024 Score=56.01 Aligned_cols=26 Identities=50% Similarity=0.703 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+|||.|..|.||||+|+.+...+..+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999877643
No 182
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.13 E-value=0.087 Score=57.28 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC------CceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F------~~~~~v~ 50 (847)
.+..+|..|-..-+++-|+|.+|.||||+|..+.-...... ..++|+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34455555545568899999999999999998865432211 3678887
No 183
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.29 Score=57.73 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|..|+||||+|+.+.+.+-
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh
Confidence 5577999999999999999988654
No 184
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.28 Score=57.87 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|+.|+||||+|+.+-+.+-
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 36688999999999999999988653
No 185
>PRK06217 hypothetical protein; Validated
Probab=95.10 E-value=0.099 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.|.|.|++|.||||+|+++-.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 186
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.093 Score=57.64 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-++++++|..|+||||++.++-.+...++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46999999999999999999988765444
No 187
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.08 E-value=0.067 Score=60.12 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=52.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
+-+||.|-.|+|||||+..+-..+..+. +.++++. +.|.. ....++.++++..-..++..-+ .+.
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~l-iGER~--rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG-VGERT--REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5789999999999999998877655432 3344443 32221 2234444444432111111111 111
Q ss_pred hhhHHHHHHHh---cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL---CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L---~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.+++ ++|.||+++||+-...+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 252 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQ 252 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHH
Confidence 11234456666 67999999999976654
No 188
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.05 E-value=0.12 Score=50.79 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++.++|++|.||||+++.+...+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999877655
No 189
>PRK00625 shikimate kinase; Provisional
Probab=95.03 E-value=0.019 Score=56.29 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.|.|+||.|.||||+|+.+-++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 190
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.14 Score=53.86 Aligned_cols=101 Identities=22% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHH----HhcCCCcc
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE----VLMERDLI 79 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~----~l~~~~~~ 79 (847)
+-.+|..+-..-+++=|+|+.|.||||+|-.+.-..+..-..++|++ .-...+..++ +++..+ +.-.+...
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~l~p~r~-~~l~~~~~d~l~v~~~~~ 123 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHALDPERA-KQLGVDLLDNLLVSQPDT 123 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCCCCHHHH-HHHHHhhhcceeEecCCC
Confidence 33445544456689999999999999999999988877777899997 3333333333 333333 11111111
Q ss_pred ccchhhhHHHHHHHhcCCcEEEEEcCCCCH
Q 003104 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQL 109 (847)
Q Consensus 80 ~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~ 109 (847)
.....+.++.+.+....+=-|||+|-|-..
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 111122233333333335678999998543
No 191
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.019 Score=56.73 Aligned_cols=26 Identities=46% Similarity=0.507 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..+|+|-||=|+||||||+++-+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999988765
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.98 E-value=0.028 Score=65.94 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=29.9
Q ss_pred hHHHHhHhcC---CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 2 EKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 2 ~~i~~lL~~~---~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|..++... ....+++.|+|..|.||||+|+.+.+.+.
T Consensus 94 ~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 94 EEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4566666543 23457899999999999999999998553
No 193
>PRK06547 hypothetical protein; Provisional
Probab=94.96 E-value=0.025 Score=55.39 Aligned_cols=28 Identities=36% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.....+|+|.|+.|.||||+|+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998863
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.14 Score=56.65 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.-++|.++|..|+||||.+..+.....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887554
No 195
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.95 E-value=0.018 Score=58.96 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|||.|..|.||||+|+.+.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999775
No 196
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.94 E-value=0.053 Score=60.68 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=48.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cc--------hh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WD--------VH 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~--------~~ 84 (847)
..++|+|..|.|||||++.+..... ...+.+++.. -+...+..+.+..+.... .+...+ .+ ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liG----ergrev~e~~~~~l~~~r-~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVG----ERGREVREFLEDTLADNL-KKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecc----cCCccHHHHhHHHHHHhh-CCeEEEEEcCCCCHHHHHHHH
Confidence 5799999999999999987765322 2223333320 012233334343333321 111110 00 11
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.+++ ++|.||+++||+-...+
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~A~ 268 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRFAH 268 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHHHH
Confidence 1223344554 58999999999976654
No 197
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.93 E-value=0.017 Score=58.17 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
||||.|..|.||||+|+.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 198
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.57 Score=54.54 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|..|+||||+|+.+-..+-
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999988653
No 199
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.92 E-value=0.017 Score=52.75 Aligned_cols=27 Identities=44% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
|-|+|..|+||||+|+++-..+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 458999999999999999998887775
No 200
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.92 E-value=0.022 Score=56.64 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++.+|.|+|+.|.||||+|+.+..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998764
No 201
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.91 E-value=0.19 Score=53.24 Aligned_cols=37 Identities=32% Similarity=0.377 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
...++|+++|.+|+||||.|..+...+..+-...+.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999988887665443333334
No 202
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.91 E-value=0.018 Score=51.60 Aligned_cols=26 Identities=50% Similarity=0.583 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
|-|+|.+|+|||++|+.+...+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999999988776554
No 203
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.88 E-value=0.034 Score=56.35 Aligned_cols=90 Identities=27% Similarity=0.353 Sum_probs=50.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEeccccccc-CChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~-~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
+-++|.|..|+|||+|++.+-+.... +..+++. +-++ ..+.++.+++...-..++..-+ .+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 47899999999999999999886542 2335555 2211 2344444554332111111100 110
Q ss_pred hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
....-.+.+++ ++|.||+++||+....+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~a~ 119 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRWAQ 119 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHHHH
Confidence 01112333444 68999999999865543
No 204
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.86 E-value=0.04 Score=54.83 Aligned_cols=94 Identities=22% Similarity=0.174 Sum_probs=53.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
-.+++|+|..|.||||+++++...+... ...+.+.+..|...... ..+ ++. ...............+.++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~-~~~--~~~---~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP-NWV--RLV---TRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC-CEE--EEE---EecCCCCCCCccCHHHHHHHHh
Confidence 4689999999999999999998866532 33444443333221100 000 000 0000000111123456677777
Q ss_pred cCCcEEEEEcCCCCHHHHHHH
Q 003104 95 CRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 95 ~~kk~LlVLDDV~~~~~l~~L 115 (847)
+...=.++++.+.+.+.++.+
T Consensus 98 R~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH
Confidence 777888889999887766544
No 205
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.82 E-value=0.071 Score=58.55 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....+-|+|..|+||||+|+++.+.+..+
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 33457799999999999999999976543
No 206
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.81 E-value=0.16 Score=57.38 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh--ccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~--~~F~~~~~v~ 50 (847)
-++|.++|++|+||||++..+-.... ..-..++++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36999999999999999988876554 3333445554
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.068 Score=61.76 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=54.1
Q ss_pred hHHHHhHhcC----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCC
Q 003104 2 EKMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (847)
Q Consensus 2 ~~i~~lL~~~----~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~ 77 (847)
|+|.+.|..+ .-.-.++..||++|||||.||+.|.+-+...|- ++-+.-+|..++ +-+.+.
T Consensus 333 eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~sLGGvrDEAE--------------IRGHRR 397 (782)
T COG0466 333 ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RISLGGVRDEAE--------------IRGHRR 397 (782)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EEecCccccHHH--------------hccccc
Confidence 3455555432 122369999999999999999999998877664 233333333322 122222
Q ss_pred ccccchhhhHHHHHHHhcCCcEEEEEcCCCCH
Q 003104 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQL 109 (847)
Q Consensus 78 ~~~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~ 109 (847)
--+......+-.--...+.+.=+++||.||..
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm 429 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKM 429 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhc
Confidence 22222222211112334667889999999843
No 208
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.46 Score=54.28 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+-+-++|+.|+||||+|+.+-..+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 578899999999999999987754
No 209
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.78 E-value=0.023 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..|.|+|++|.||||+|+.+..++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999763
No 210
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.096 Score=59.55 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-++|+|+|.+|+||||++..+...+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999988765443
No 211
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.43 Score=53.14 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+.+-++|+.|+||||+|+++-+.+..
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357889999999999999999776643
No 212
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.77 E-value=0.04 Score=55.46 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.-.+|+|+|+.|.||||||+.+...+...=...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 347999999999999999999999765443334555
No 213
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.29 Score=59.64 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|..|+||||+|+.+-+.+-
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6778999999999999999988664
No 214
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.51 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+.+-++|+.|+||||+|+.+-+.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999998865
No 215
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.73 E-value=0.062 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.|-++|++|.||||+|+++.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37799999999999999999876543
No 216
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.72 E-value=0.037 Score=53.86 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
....+++|+|..|.|||||++.+...+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 34679999999999999999999987764
No 217
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.71 E-value=0.14 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
||.|+|.+|.||||+|+.+-..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998664
No 218
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.70 E-value=0.021 Score=56.49 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
||||.|.+|.||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 219
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.70 E-value=0.042 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|+|.|++|.||||+|+++......
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999997653
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.0012 Score=66.90 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=43.5
Q ss_pred EEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCC--CCCCCCCCcCcEeeccCccccc
Q 003104 311 LKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR--TPDFTGVPNLERLNLEGCTRLL 388 (847)
Q Consensus 311 L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~--~p~~~~l~~L~~L~L~~c~~l~ 388 (847)
|+..|+.+..+.-.-.++.|++|.|+-|+|+.| ..+..+++|+.|.|..|.+... +.-+.++|+|++|.|..|.-.+
T Consensus 24 LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 24 LNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 333344444433333455555555555555554 2344555555555555533211 1124555666666666554433
Q ss_pred cccc-----cccCCCCCcEEe
Q 003104 389 EVHQ-----SVGTLKRLILLN 404 (847)
Q Consensus 389 ~lp~-----~i~~L~~L~~L~ 404 (847)
+-+. .+..|++|+.||
T Consensus 103 ~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 103 EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccchhHHHHHHHHcccchhcc
Confidence 3321 233455555554
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.68 E-value=0.18 Score=56.91 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...+|.++|..|+||||.|..+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998877654
No 222
>PRK13947 shikimate kinase; Provisional
Probab=94.66 E-value=0.026 Score=55.30 Aligned_cols=26 Identities=38% Similarity=0.380 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-|.|+||.|.||||+|+.+-+++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 38899999999999999999876543
No 223
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.59 E-value=0.25 Score=51.10 Aligned_cols=48 Identities=29% Similarity=0.395 Sum_probs=35.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHH-HHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVL-YNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~v-y~~i~~~F~~~~~v~ 50 (847)
+.+-.+|..|-..=+++.|+|..|.||||+|.++ |+.++ +=+.++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEE
Confidence 3455566656566689999999999999999998 55444 445667776
No 224
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.56 E-value=0.2 Score=57.06 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=36.9
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++-++|..|-..-.++-|.|.+|+|||||+..+......+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566666655555579999999999999999999886654444567765
No 225
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.56 E-value=0.17 Score=54.93 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=33.9
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------CCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~------F~~~~~v~ 50 (847)
.+..+|..|-..-+++-|+|.+|+||||+|..+.-..... =..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3455555554556899999999999999999886544311 12678887
No 226
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.55 E-value=0.047 Score=51.48 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v~ 50 (847)
.+|+|+|..|.|||||++.+.+.+..+ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 379999999999999999999987754 44443443
No 227
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.53 E-value=0.013 Score=35.88 Aligned_cols=21 Identities=57% Similarity=0.850 Sum_probs=13.0
Q ss_pred CCCEEECcCCCCcccchhhhc
Q 003104 542 SLEAIDLSGNNFFSLPSSINQ 562 (847)
Q Consensus 542 sL~~L~Ls~n~l~~lp~~i~~ 562 (847)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 456666666666666665543
No 228
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.51 E-value=0.062 Score=60.10 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+-|-++|.+|.|||++|+++.++....
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 34568899999999999999999976543
No 229
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.51 E-value=0.12 Score=60.20 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc--eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~--~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~ 93 (847)
..+-|||-.|.|||.||+++.+.+...+.. +.|+. ...+..++...+..+ ....++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----------cHHHHHHH
Confidence 358899999999999999999987654432 34443 223334444442211 12334455
Q ss_pred hcCCcEEEEEcCCCC
Q 003104 94 LCRKRVLVILDDVDQ 108 (847)
Q Consensus 94 L~~kk~LlVLDDV~~ 108 (847)
++.- =+|||||+..
T Consensus 375 y~~~-DLLlIDDIq~ 388 (617)
T PRK14086 375 YREM-DILLVDDIQF 388 (617)
T ss_pred hhcC-CEEEEehhcc
Confidence 5443 4678899963
No 230
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.49 E-value=0.058 Score=55.57 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..+.+.|+|..|+|||+||+++++.....=....++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3467889999999999999999997643322334443
No 231
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0015 Score=66.28 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=32.5
Q ss_pred cEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccccc--ccccCCCCCcEEeccC
Q 003104 330 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILLNLKD 407 (847)
Q Consensus 330 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~L~~ 407 (847)
.+.|+..+|.+..+. -..+++.|++|.|+-|++. .+..+..+++|++|+|..|.+ ..+. .-+.++++|+.|.|..
T Consensus 21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhhcccCCCccHHH-HHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhcc
Confidence 344444444444331 1334555555555554322 223344455555555554321 1111 2234445555555544
Q ss_pred CC
Q 003104 408 CR 409 (847)
Q Consensus 408 c~ 409 (847)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 43
No 232
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.48 E-value=0.044 Score=62.80 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=28.9
Q ss_pred HHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 5 ~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..++....+++.+|||.|..|.||||||+++...+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44555555678999999999999999999998754
No 233
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.47 E-value=0.19 Score=52.47 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=52.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh----ccCCceeEEEeccccccc-CChHHHHHHHHHHHhcCCCccc---cch----
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLII---WDV---- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~----~~F~~~~~v~~~~~~s~~-~~l~~l~~~il~~~l~~~~~~~---~~~---- 83 (847)
+-+||.|-.|+|||||+..+-++.. ++-+.++|+. +-++ ....++.+++...=..++..-+ .+.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 4689999999999999998877543 2346667765 2222 2334444444332100111101 111
Q ss_pred ----hhhHHHHHHHh--c-CCcEEEEEcCCCCHHH
Q 003104 84 ----HKGINLIRWRL--C-RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ----~~~~~~i~~~L--~-~kk~LlVLDDV~~~~~ 111 (847)
...+..+.|++ + +|+||+|+||+....+
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 11223455665 3 7899999999865544
No 234
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.44 E-value=0.031 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|.|.|+.|+||||+|+++...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.40 E-value=0.046 Score=59.30 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..-++++++|+.|.||||||+++-+.+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4468999999999999999999988553
No 236
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.37 E-value=0.027 Score=52.99 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
+|+|+|+.|+||||||+.+.......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 478999999999999999998654443
No 237
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.36 E-value=0.13 Score=58.06 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=53.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
+-+||.|-.|+|||||+..+-+.+. .+-+.++|+. +.|.. ....++.+++...-..++..-+ .+.
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER~--rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGERS--REGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcch--HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 5789999999999999998887655 3456666654 32211 2233444444332111111111 111
Q ss_pred hhhHHHHHHHh---cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL---CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L---~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.+++ ++|.||+++||+-...+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~ 251 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQ 251 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHHHH
Confidence 11233455666 38999999999966554
No 238
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.35 E-value=0.46 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|..|+||||+|+++...+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35677999999999999999998764
No 239
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.34 E-value=0.048 Score=52.41 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=23.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
||+|+|+.|.||||+++++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999987765
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.32 E-value=0.16 Score=54.66 Aligned_cols=48 Identities=29% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-.+|. .|-..=+++-|+|..|+||||||-.+......+-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3445555 34455689999999999999999987776655556677875
No 241
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.31 E-value=0.038 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|.+.|++|.||||+|+++-++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988654
No 242
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.30 E-value=0.088 Score=55.02 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=48.6
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--h-----
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV--H----- 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~--~----- 84 (847)
+-++|.|-.|+|||||| ..+-++. +-+..|.+..+.|.. ....++.+++...-..++..-+ .+. .
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~--~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA--STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch--HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 57899999999999996 5565542 345554444333321 2334455555432111111100 111 0
Q ss_pred -hhHHHHHHHh--cCCcEEEEEcCCCCHH
Q 003104 85 -KGINLIRWRL--CRKRVLVILDDVDQLE 110 (847)
Q Consensus 85 -~~~~~i~~~L--~~kk~LlVLDDV~~~~ 110 (847)
..+-.+.|++ ++|.||||+||+....
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 1123334444 6899999999986553
No 243
>PRK05922 type III secretion system ATPase; Validated
Probab=94.29 E-value=0.089 Score=58.78 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=48.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc-cchh----------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII-WDVH---------- 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~-~~~~---------- 84 (847)
..++|.|..|+|||||++.+-+... -+...++. +.+.. ........+.......++..-+ ...+
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~--~d~gvi~l-iGerg--~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK--STINVIAL-IGERG--REVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC--CCceEEEE-eCCCC--chHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4689999999999999998887532 23333322 11111 1122333333332111111111 1111
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.+++ ++|.||+++||+-...+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~A~ 261 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRWIA 261 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHH
Confidence 1223345555 68999999999976654
No 244
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.26 E-value=0.14 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.-|+|+|++|+|||||+.++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999998873
No 245
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.25 E-value=0.23 Score=56.56 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=35.9
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++-.+|..|-..=.++.|.|.+|+|||||+..+...+..+=..++|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4556666655555679999999999999999998765554434566765
No 246
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=1.2 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.+-++|..|+||||+|+.+-+.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999988654
No 247
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.23 Score=54.27 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.-++|+|+|..|+||||++..+......+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999998876544433344444
No 248
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.22 E-value=0.18 Score=54.30 Aligned_cols=48 Identities=27% Similarity=0.264 Sum_probs=36.4
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-.+|. .|-..=+++=|+|.+|.||||||-.+.-.....-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445555 34455688999999999999999998776666667788886
No 249
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.10 E-value=0.042 Score=52.63 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|.|+|+.|.||||+|+.+..+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 250
>PRK13949 shikimate kinase; Provisional
Probab=94.10 E-value=0.04 Score=53.90 Aligned_cols=24 Identities=46% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-|.|+||.|.||||+|+.+-+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988654
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.09 E-value=0.047 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
+=|-++|..|.|||++++....+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcEEEECCCCCchhHHHHhhhcc
Confidence 45679999999999999987764
No 252
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.08 E-value=0.035 Score=54.84 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++|+|+|+.|.||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998853
No 253
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.06 E-value=0.15 Score=52.64 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=49.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEe--cccccccCChHHHHHHHHHHHhcCCC------ccccchhhhH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN--VREVSVTRGLVPLQEQLLSEVLMERD------LIIWDVHKGI 87 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~--~~~~s~~~~l~~l~~~il~~~l~~~~------~~~~~~~~~~ 87 (847)
.++||||-.|.||||+||.+-.-+... .+.++... +...+ +....+...+++..+-..++ ...+.-+.-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 589999999999999999998744322 23333321 11111 11222333444444311111 1112222222
Q ss_pred HHHHHHhcCCcEEEEEcCC
Q 003104 88 NLIRWRLCRKRVLVILDDV 106 (847)
Q Consensus 88 ~~i~~~L~~kk~LlVLDDV 106 (847)
-.|.+.|.-+-=++|.|.-
T Consensus 118 i~IARALal~P~liV~DEp 136 (268)
T COG4608 118 IGIARALALNPKLIVADEP 136 (268)
T ss_pred HHHHHHHhhCCcEEEecCc
Confidence 3567788889999999985
No 254
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.04 E-value=0.19 Score=54.21 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=38.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH--HHh----ccCCceeEEEecccccccCChHHHH
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLK----DQFEASSFLANVREVSVTRGLVPLQ 65 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~--~i~----~~F~~~~~v~~~~~~s~~~~l~~l~ 65 (847)
+.+-.+|..|-..-+++=|+|..|+||||+|..+.- .+. ..=..++|++ ....+...++.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~ 148 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIR 148 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHH
Confidence 345566665556668999999999999999987543 222 1224678887 33334444443
No 255
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.04 E-value=0.13 Score=55.39 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=48.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cc--------hh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WD--------VH 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~--------~~ 84 (847)
+.++|+|..|.|||||++.+.+.... +..++.. +.+ +...+....++.+..-.-.+..-+ .+ ..
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~~-iGe--r~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIAL-IGE--RGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEE-Eec--CCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 57899999999999999988875432 2222222 111 122333344333332100010000 01 01
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+-.+.+++ ++|.||+++||+-...+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~a~ 173 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRFAM 173 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHHHH
Confidence 1223344555 68999999999876654
No 256
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.04 E-value=0.049 Score=60.68 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=49.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------h
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV--------H 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~--------~ 84 (847)
..++|+|..|.|||||++.+.+... .+..+++. +.|.. ....+..++++..-..++..-+ .+. .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~--~dv~Vi~l-IGER~--rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTT--ADVIVVGL-VGERG--REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCC--CCEEEEEE-EcCCh--HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 5799999999999999998886432 24555542 32221 1223333333222000111100 111 1
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.|++ +++.||+++||+-...+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~A~ 266 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRYAQ 266 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHHHH
Confidence 1122345555 68999999999976654
No 257
>PRK08149 ATP synthase SpaL; Validated
Probab=94.02 E-value=0.12 Score=57.78 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=50.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCcc-c--cc--------hh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-I--WD--------VH 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~-~--~~--------~~ 84 (847)
+.++|+|..|.|||||++.+.+... -+..++.. +.+ ....+..+.++.+......+..- . .+ ..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g~-Ig~--rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE--ADVFVIGL-IGE--RGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC--CCeEEEEE-Eee--CCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 5889999999999999998877422 23333322 211 22334444444444311111000 0 11 11
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.+++ ++|.||+++||+-...+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~A~ 255 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRYAR 255 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence 1223444555 68999999999976654
No 258
>PRK14974 cell division protein FtsY; Provisional
Probab=94.01 E-value=0.35 Score=52.57 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..++|+++|+.|+||||++..+...+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999888888766543
No 259
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.99 E-value=0.084 Score=56.82 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.|+|-..|.|||||||+|-+.--+.........-|.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999996656655555444443
No 260
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.97 E-value=0.15 Score=54.74 Aligned_cols=87 Identities=24% Similarity=0.293 Sum_probs=54.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC--CceeEEEecccccccC-ChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F--~~~~~v~~~~~~s~~~-~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
+.|.|.|..|.||||+++++.+.+.... +..+-+++..|..-.+ +... +.... ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~~-----~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTSD-----DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEecC-----CCCCHHHHHHH
Confidence 4677999999999999999999886542 3334445444432111 0000 00000 11144567788
Q ss_pred HhcCCcEEEEEcCCCCHHHHHHH
Q 003104 93 RLCRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~~~l~~L 115 (847)
.|+..-=-||++.|.+.+.++.+
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHH
Confidence 88888888889999887766544
No 261
>PRK13946 shikimate kinase; Provisional
Probab=93.97 E-value=0.042 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|.+.||.|.||||+|+.+-+++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999764
No 262
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=0.98 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-+-++|+.|+||||+|+++-+.+-
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46688999999999999999988653
No 263
>PRK13975 thymidylate kinase; Provisional
Probab=93.96 E-value=0.051 Score=54.54 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|.|.|+.|+||||+|+.+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 264
>PRK09354 recA recombinase A; Provisional
Probab=93.96 E-value=0.19 Score=54.53 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=37.1
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-.+|. .|-..=+++=|+|..|.||||||-.+.-.....-..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3455565 44455689999999999999999998776666667788886
No 265
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.94 E-value=0.14 Score=54.01 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.|-|.|.+|.||||+|+.+-..+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 5789999999999999999997665
No 266
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.94 E-value=0.089 Score=49.93 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~ 60 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWG 60 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEEC
Confidence 5899999999999999999987432 234555553
No 267
>PRK10867 signal recognition particle protein; Provisional
Probab=93.94 E-value=0.35 Score=54.39 Aligned_cols=28 Identities=39% Similarity=0.457 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+|.++|.+|+||||.|..+-..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5799999999999999888887766555
No 268
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.93 E-value=0.11 Score=57.39 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
-..+-|||..|.|||-|++++-|.+.........+. ++.. .-..++...+.. ...+..|+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~se----~f~~~~v~a~~~----------~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LTSE----DFTNDFVKALRD----------NEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----ccHH----HHHHHHHHHHHh----------hhHHHHHHhh
Confidence 567889999999999999999998887777544444 2111 112222233211 2245566666
Q ss_pred cCCcEEEEEcCCC
Q 003104 95 CRKRVLVILDDVD 107 (847)
Q Consensus 95 ~~kk~LlVLDDV~ 107 (847)
.-=++++||++
T Consensus 175 --~~dlllIDDiq 185 (408)
T COG0593 175 --SLDLLLIDDIQ 185 (408)
T ss_pred --ccCeeeechHh
Confidence 44477889985
No 269
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.92 E-value=0.22 Score=52.48 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~ 95 (847)
.+|.|.|..|.||||+++++.+.+...-...+.+++..|..-. +. .++.-... ........++..|+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~--------~q~~v~~~----~~~~~~~~l~~~lR 147 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GI--------NQVQVNEK----AGLTFARGLRAILR 147 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cc--------eEEEeCCc----CCcCHHHHHHHHhc
Confidence 5899999999999999999988765422334555544443211 11 01000000 01134567788888
Q ss_pred CCcEEEEEcCCCCHHHHH
Q 003104 96 RKRVLVILDDVDQLEQLQ 113 (847)
Q Consensus 96 ~kk~LlVLDDV~~~~~l~ 113 (847)
..-=.|++++|.+.+...
T Consensus 148 ~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 148 QDPDIIMVGEIRDAETAE 165 (264)
T ss_pred cCCCEEEeccCCCHHHHH
Confidence 888889999998887544
No 270
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.91 E-value=0.046 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|.|+|+.|.||||+|+.+-+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999988653
No 271
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.90 E-value=0.043 Score=55.53 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++|+|+|..|.||||||+.+....
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999864
No 272
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.88 E-value=0.13 Score=57.45 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=49.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCcc---ccch--------h
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI---IWDV--------H 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~---~~~~--------~ 84 (847)
+.++|.|..|+|||||++.+.+.... +..+++. +.|..+ ...+..++.+.+-..++..- ..+. .
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~r--Ev~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IGERGR--EVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-EecCcH--HHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 57899999999999999999875532 3445443 222211 12233332222200001100 0111 1
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.+++ ++|.||+++||+-...+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~A~ 262 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRFAM 262 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHHHh
Confidence 1223345555 68999999999965544
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.99 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+.+-++|..|+||||+|+.+-+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677899999999999999997754
No 274
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.87 E-value=0.16 Score=56.82 Aligned_cols=25 Identities=44% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++.|.|+-++||||+++.+-.....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~ 63 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE 63 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc
Confidence 9999999999999999655554433
No 275
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.85 E-value=0.051 Score=57.74 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
....+|||.|..|.||||+|+.+-..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999998876554
No 276
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.84 E-value=0.046 Score=51.80 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
||.|.|+.|.||||+|+.+-.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 277
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.84 E-value=0.15 Score=56.91 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
..+-|-++|..|.||||+|+++.+.....|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 356788999999999999999998765443
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.84 E-value=0.33 Score=54.31 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+|.++|..|+||||.|..+...++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5899999999999999999887766554
No 279
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.84 E-value=0.064 Score=59.98 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..++|.|..|.|||||++.+.+..
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC
Confidence 588999999999999999988743
No 280
>PRK13948 shikimate kinase; Provisional
Probab=93.82 E-value=0.047 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..+.|.++||.|.||||+++.+-++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 347889999999999999999988764
No 281
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.19 Score=49.40 Aligned_cols=23 Identities=52% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|-|.|.+|.||||+|+.+-+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999973
No 282
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.82 E-value=0.043 Score=54.36 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
||.|.|++|+||||+|+.+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 283
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.81 E-value=0.18 Score=56.59 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=52.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEecccccccCChHHHHHHHHHHHhcCCCcc---ccch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI---IWDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~---~~~~-------- 83 (847)
+-+||.|-.|+|||||+..+-..+..+- +.++|+. +.|.. ....++.+++...-..++..- ..+.
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~al-IGER~--rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG-VGERT--REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEE-ecCCc--hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5789999999999999999887654332 3444443 32222 223444444433211111110 0111
Q ss_pred hhhHHHHHHHh---cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL---CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L---~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.|++ +++.||+|+||+-...+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHH
Confidence 11233455666 56899999999976654
No 284
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.80 E-value=0.073 Score=52.05 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFL 49 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v 49 (847)
+.++-+.|+.|+|||.+|+++-+.+. +..+..+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 35778999999999999999999877 555544444
No 285
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.80 E-value=0.046 Score=55.24 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.++||+|..|.||||||+++-.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 286
>PRK13695 putative NTPase; Provisional
Probab=93.77 E-value=0.071 Score=52.42 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEE
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 49 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v 49 (847)
.|+|.|.+|+|||||++.+++.+.. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999987653 34433343
No 287
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.73 E-value=0.19 Score=58.26 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=46.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
.+-+|.-++|.+|+||||||+.|..+.- |. ++=+. .|.......+.+.|...+....-...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhcccccc------------
Confidence 3468999999999999999999988532 11 11111 33444455555666555432211100
Q ss_pred HhcCCcEEEEEcCCCCHH
Q 003104 93 RLCRKRVLVILDDVDQLE 110 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~~ 110 (847)
.++-.=+|+|.+|...
T Consensus 385 --dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 --DSRPVCLVIDEIDGAP 400 (877)
T ss_pred --CCCcceEEEecccCCc
Confidence 1466678999998543
No 288
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.72 E-value=0.047 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|.|+|+.|.|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997753
No 289
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.72 E-value=0.085 Score=55.70 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=28.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++|+|+|.+|.|||||+..+-..++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999888876 455554
No 290
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.68 E-value=0.1 Score=56.35 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccC-ChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~-~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
.-..|.|.|..|.||||+++++...+.... ..+.+.+..|..... ....+ ...............+.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l--------~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL--------FYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE--------EecCCCCCcCccCHHHHHHH
Confidence 346999999999999999999988664332 344455444432211 00000 00000000111233566777
Q ss_pred HhcCCcEEEEEcCCCCHHHHHHH
Q 003104 93 RLCRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~~~l~~L 115 (847)
.|+..-=.||+|.+...+.++.+
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFI 236 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHH
Confidence 78888888999999876655443
No 291
>PRK13768 GTPase; Provisional
Probab=93.66 E-value=0.092 Score=55.02 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..++.|+|.||+||||+|..+...+..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 3689999999999999999888766543
No 292
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.05 Score=52.02 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy 36 (847)
.|+|.|.+|+||||+|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 293
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.65 E-value=0.28 Score=45.10 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=28.4
Q ss_pred CcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccccc-ccccCCCCCcEEecc
Q 003104 329 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLK 406 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~ 406 (847)
+|+.+.+.++ +..++.. +..+++|+.+.+..+........|..+++|+.+.+..+ +..++ ..+.+. +|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 4445555442 4444332 44555556666543211111112555666666666442 22222 334444 66666554
Q ss_pred C
Q 003104 407 D 407 (847)
Q Consensus 407 ~ 407 (847)
.
T Consensus 112 ~ 112 (129)
T PF13306_consen 112 S 112 (129)
T ss_dssp T
T ss_pred C
Confidence 3
No 294
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.60 E-value=0.086 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..++|.|..|.|||||++.+.....
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC
Confidence 5799999999999999988887543
No 295
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.58 E-value=0.22 Score=61.54 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-+-+||.+|+||||||+.+-.++..
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4559999999999999999998754
No 296
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.54 E-value=0.095 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+.++|.|..|+|||||++.+....
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 589999999999999999998743
No 297
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.54 E-value=0.22 Score=61.41 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=26.2
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+++...|+... ..-+-+||.+|+||||+|+.+..++.
T Consensus 189 ~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 189 ERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred HHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34455554432 22345999999999999999998775
No 298
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.53 E-value=0.063 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy 36 (847)
-++++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 299
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.53 E-value=0.051 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~ 38 (847)
+|.|.|+.|.||||+|+.+.++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.53 E-value=0.17 Score=54.89 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.....+|||.|.+|+||||++.++...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567899999999999999999988876654
No 301
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=1.5 Score=50.41 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|..|+||||+|+.+...+-
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667899999999999999888653
No 302
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.51 E-value=0.33 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
||||.|-.|.||||+|+++...+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999987654
No 303
>PRK06820 type III secretion system ATPase; Validated
Probab=93.51 E-value=0.078 Score=59.44 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
..++|+|..|+|||||++.+...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhcc
Confidence 47899999999999999988764
No 304
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.50 E-value=0.29 Score=45.05 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCcccccccc-ccccCCCCCc
Q 003104 326 RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLI 401 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~ 401 (847)
.+.+|+.+.+.. .++.+++. +..+++|+.+.+..+ ...+++ |.++++|+.+.+.. ....++ ..+..+++|+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccccc
Confidence 445667777664 46666543 666667777777664 333332 66666677777654 222222 2344456666
Q ss_pred EEeccC
Q 003104 402 LLNLKD 407 (847)
Q Consensus 402 ~L~L~~ 407 (847)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 665543
No 305
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.16 Score=58.59 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=32.0
Q ss_pred HHHHhHhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 3 KMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 3 ~i~~lL~~----~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
+|.+++.. ++-+=.|+..+|++|||||.+||.|...+-..|-
T Consensus 422 RILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 422 RILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred HHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 44555532 3445589999999999999999999997766664
No 306
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.48 E-value=0.062 Score=51.85 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=49.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEe-----cccccc---cCChHHHHHHHHHHHhcCCCccccc--hhh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLAN-----VREVSV---TRGLVPLQEQLLSEVLMERDLIIWD--VHK 85 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~-----~~~~s~---~~~l~~l~~~il~~~l~~~~~~~~~--~~~ 85 (847)
-|.++||-|.||||+.|++-+.+.-+| |.=-++.. +.++.. ..+.+.+-.+++.+++...+.-+.. -.-
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~v 83 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGAV 83 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCccc
Confidence 477999999999999999987665554 22111111 112111 2234555666677765444221111 111
Q ss_pred hHHHHHHHhcCCcEEEEEcC
Q 003104 86 GINLIRWRLCRKRVLVILDD 105 (847)
Q Consensus 86 ~~~~i~~~L~~kk~LlVLDD 105 (847)
....-++.|+.+-+.|-||-
T Consensus 84 ~~~enr~~l~~~g~vv~L~~ 103 (172)
T COG0703 84 LSEENRNLLKKRGIVVYLDA 103 (172)
T ss_pred cCHHHHHHHHhCCeEEEEeC
Confidence 22455677776666666654
No 307
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.47 E-value=0.067 Score=53.06 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=29.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.|+|.|+|+.|+|||||++++..+...+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36899999999999999999999988888544443
No 308
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.46 E-value=0.12 Score=49.85 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++|+|+|..|.|||||++++...+..+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999977654
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.3 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.+-++|..|+||||+|+.+.+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35667999999999999999988664
No 310
>PLN02348 phosphoribulokinase
Probab=93.43 E-value=0.1 Score=57.20 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999997654
No 311
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.42 E-value=0.067 Score=51.30 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=28.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+|++|+|+.|.|||||...+-.+++.+--..+-+.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 69999999999999999999998776654444443
No 312
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=1.1 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|+.|+||||+|+.+-+.+-
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 46777899999999999999988654
No 313
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.36 E-value=0.06 Score=54.56 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=25.9
Q ss_pred hHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 7 YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 7 lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
|+-.+...-++|.|+|.+|+|||||++++.+.
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444556789999999999999999999764
No 314
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.31 E-value=0.11 Score=52.55 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..++++|+++|..|.|||||.+++.....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999988654
No 315
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.30 E-value=0.21 Score=51.01 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.-|-+||..|.|||+++|++.+....+
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 445579999999999999999976543
No 316
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.30 E-value=0.1 Score=45.06 Aligned_cols=25 Identities=48% Similarity=0.663 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++.+.|.+|+||||+|..+-..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987765
No 317
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.29 E-value=0.064 Score=53.72 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+|||.||.|.||||.|+.+-+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999997655
No 318
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.29 E-value=0.32 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|.|.|++|+||||+|+.+-.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999987754
No 319
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.27 E-value=0.16 Score=56.84 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=49.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cchh--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDVH-------- 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~~-------- 84 (847)
..++|.|..|.|||||.+.+.+.... +.++++. +.|.. ....++.++.+..-..++..-+ .+..
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~l-iGERg--rEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLAL-IGERG--REVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCCC--CEEEEEE-EccCc--HHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 58999999999999999999986443 4444443 22211 1122222222221000111100 1111
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.+++ ++|.||+++||+....+
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~A~ 266 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRFAR 266 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHH
Confidence 1122344555 68999999999976654
No 320
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.27 E-value=0.2 Score=56.23 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=53.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
+-++|.|-+|+|||||+..+-.... .+-+.++|+. +.+. .....++.+++...-..++..-+ .+.
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR--~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGER--CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccC--cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 5789999999999999999876543 3346677764 2221 12233444444332111111100 111
Q ss_pred hhhHHHHHHHhc---CCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRLC---RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L~---~kk~LlVLDDV~~~~~ 111 (847)
...+..+.++++ ++.||+++||+-+..+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~ 246 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRFIQ 246 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHHHH
Confidence 122344556664 5999999999976654
No 321
>PRK04296 thymidine kinase; Provisional
Probab=93.24 E-value=0.14 Score=51.09 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.++-|+|..|.||||+|..+..+...+-..++++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4677999999999999999888776554433333
No 322
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.098 Score=50.80 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCce
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~ 46 (847)
.++.|.|++|+||+||+++++++. +|..+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~S 33 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFS 33 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEE
Confidence 578899999999999999999976 44433
No 323
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.22 E-value=0.22 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
=+-+||.+|+||||+|+.+..++..
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3469999999999999999998754
No 324
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.21 E-value=0.34 Score=48.04 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|.|.|..|.||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998764
No 325
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.19 E-value=0.16 Score=57.07 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
-..++|.|..|.|||||++.+.+.... +...+.. +.+ +...+....++....-..++..-+ .+.
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~-iG~--~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~ 219 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGASA--DVNVIAL-IGE--RGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKA 219 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEE-Ecc--CCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHH
Confidence 457899999999999999999885432 2233322 111 122233333333332111111100 111
Q ss_pred hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.+++ +++++|+++||+....+
T Consensus 220 ~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~ 249 (422)
T TIGR02546 220 AYTATAIAEYFRDQGKRVLLMMDSLTRFAR 249 (422)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCchHHHH
Confidence 11223344555 57899999999976654
No 326
>PRK04182 cytidylate kinase; Provisional
Probab=93.18 E-value=0.072 Score=52.47 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|.|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999988753
No 327
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.14 E-value=0.2 Score=50.16 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+|.|.|+-|+||||+|+.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997754
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.13 E-value=0.61 Score=52.46 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..+|.++|..|+||||.|..+...+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999888877654
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=0.49 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
-++|+++|..|+||||+++.+-.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999988764
No 330
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.11 E-value=0.2 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-++|.|+|++|+|||||++++..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4789999999999999999998864
No 331
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.09 E-value=0.14 Score=46.48 Aligned_cols=25 Identities=48% Similarity=0.785 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
|.+.|.||+||||+|..+...+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999877654
No 332
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.07 E-value=0.2 Score=53.17 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=58.8
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCccc-
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLII- 80 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~- 80 (847)
++.++|...-..-+.|.|.|..|.||||+++++.+.+... +.+ +-+++..|..-.. . .......
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~-~------------~~~~~~~~ 180 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPG-P------------NQIQIQTR 180 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SC-S------------SEEEEEEE
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeecc-c------------ceEEEEee
Confidence 4555555443345799999999999999999999977766 333 3344333332110 0 0000001
Q ss_pred cchhhhHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Q 003104 81 WDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 81 ~~~~~~~~~i~~~L~~kk~LlVLDDV~~~~~l~~L 115 (847)
.........++..|+..-=.||++.|.+.+..+.+
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~ 215 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAI 215 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHH
T ss_pred cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHH
Confidence 12334567788888888788899999887776654
No 333
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.04 E-value=0.36 Score=52.21 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHh--c----cCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~--~----~F~~~~~v~ 50 (847)
+.+..+|..|-..-.++.|+|..|.||||+|..+.-... . .-..++|+.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 345566665556678999999999999999988765221 1 113468876
No 334
>PRK15453 phosphoribulokinase; Provisional
Probab=93.04 E-value=0.14 Score=53.52 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
....+|||.|-+|.||||+|+++...+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987554
No 335
>PRK06761 hypothetical protein; Provisional
Probab=93.03 E-value=0.08 Score=55.85 Aligned_cols=27 Identities=41% Similarity=0.620 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++|.|.|+.|.||||+|+.+.+.+..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987654
No 336
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.03 E-value=0.081 Score=53.93 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEec
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV 52 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~ 52 (847)
...+|-++||+|.||||..|.++.-+..++-. .++-|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 34577889999999999999999977766643 455443
No 337
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.03 E-value=0.12 Score=50.47 Aligned_cols=32 Identities=41% Similarity=0.565 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcc-CCceeEE
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFL 49 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v 49 (847)
|.|-|..|+|||||++.+.+.++.. +...=|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~ 34 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFY 34 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEE
Confidence 6799999999999999999987543 4433343
No 338
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.02 E-value=0.057 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|.|+|+.|.||||+|+.+-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999998875
No 339
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.01 E-value=0.15 Score=51.21 Aligned_cols=25 Identities=48% Similarity=0.728 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.|+|.|-||+||||+|..+-.++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~ 26 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS 26 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh
Confidence 6899999999999999996655433
No 340
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.18 Score=49.50 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=24.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcee
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASS 47 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~ 47 (847)
.|-+-|.+|+||||+|+.+-..+++.-+..+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 4667899999999999999987766544443
No 341
>PRK05439 pantothenate kinase; Provisional
Probab=92.99 E-value=0.1 Score=55.81 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
....+|||-|..|+||||+|+.+-..+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886653
No 342
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.97 E-value=0.17 Score=53.48 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~ 45 (847)
..++.+|+|.|..|.|||||++.+-+.+......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 3568999999999999999999999988766533
No 343
>PRK14530 adenylate kinase; Provisional
Probab=92.96 E-value=0.083 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|.|+|++|.||||+|+.+..+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 344
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=1.4 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+.+-++|+.|+||||+|+++...+
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4667799999999999999998855
No 345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.95 E-value=0.22 Score=61.27 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-+-+||.+|+||||+|+.+..++...
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 34599999999999999999987543
No 346
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.94 E-value=0.53 Score=55.40 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-+-++|+.|+||||+|+.+-+.+-
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhC
Confidence 45677999999999999999998664
No 347
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.93 E-value=0.084 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|.|+|+.|.||||+|+.+-+++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998763
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.92 E-value=0.11 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|.+.|.-|.||||++|.+...+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999864
No 349
>PLN02796 D-glycerate 3-kinase
Probab=92.92 E-value=0.13 Score=55.65 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..-+|||.|..|.||||||+++...+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 45789999999999999999999877543
No 350
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=1.4 Score=48.41 Aligned_cols=27 Identities=37% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-+.+-|+|..|+||||+|+.+-..+-.
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 457889999999999999999886643
No 351
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.88 E-value=0.055 Score=33.03 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=13.3
Q ss_pred cccEEEecCccccccCccccC
Q 003104 447 CLEELDVGGTAIRQIPPSIVQ 467 (847)
Q Consensus 447 ~L~~L~L~~~~i~~lp~~i~~ 467 (847)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777766666666543
No 352
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.16 Score=57.16 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-++++|+|..|.|||||++.+.+...
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccC
Confidence 46899999999999999998887543
No 353
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.86 E-value=0.5 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-++|.++|.+|+||||+|..+-...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997643
No 354
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.86 E-value=0.097 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-.+|.|.|++|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998873
No 355
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.84 E-value=0.065 Score=57.01 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
|+|+|+|-||+||||+|..+---+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 579999999999999998887755443
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.83 E-value=0.27 Score=50.54 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=27.6
Q ss_pred HHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 5 ~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+-+-....+..+|||-|.+|+||+||.-++-..+..+
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 33333444567899999999999999999988866554
No 357
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.83 E-value=0.1 Score=54.04 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEcCCCchHHHHHHHHHHHHhccC
Q 003104 20 ICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 20 I~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
|+||+|.||||+++.+.+-+..+-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~ 24 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG 24 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 689999999999999999665553
No 358
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.82 E-value=0.29 Score=51.36 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=54.3
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHH--hcc----CCceeEEEecccccccCChHHHHHHHHHHH---
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL--KDQ----FEASSFLANVREVSVTRGLVPLQEQLLSEV--- 72 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i--~~~----F~~~~~v~~~~~~s~~~~l~~l~~~il~~~--- 72 (847)
+.|-.+|..|-..-.|.=|+|.+|.|||.||-.+.-.+ ... =..++|++ ....+...++. +|++..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHHH-HHHHHTTS-
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHHH-HHhhccccc
Confidence 34556665443444688999999999999998776432 222 23477886 33334444443 333321
Q ss_pred ----hcCC-CccccchhhhHHHH---HHHh-cCCcEEEEEcCCCCH
Q 003104 73 ----LMER-DLIIWDVHKGINLI---RWRL-CRKRVLVILDDVDQL 109 (847)
Q Consensus 73 ----l~~~-~~~~~~~~~~~~~i---~~~L-~~kk~LlVLDDV~~~ 109 (847)
+..- -....+.++....+ ...+ ..+-=|||+|-+...
T Consensus 100 ~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 100 PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1000 00112233333322 2333 455668999998643
No 359
>COG3903 Predicted ATPase [General function prediction only]
Probab=92.79 E-value=0.07 Score=57.96 Aligned_cols=89 Identities=21% Similarity=0.385 Sum_probs=58.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
.+.|-+.++|.|||||||+|-.+-. +..-|..-.|..+.+++....-+- -++...+. .....-+.....+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~----~~~ag~~g---l~~~~g~~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF----PTLAGALG---LHVQPGDSAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH----HHHHhhcc---cccccchHHHHHHHH
Confidence 4568999999999999999998888 888897666666555555432221 11111111 111111223456778
Q ss_pred HhcCCcEEEEEcCCCCH
Q 003104 93 RLCRKRVLVILDDVDQL 109 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~ 109 (847)
+..++|.++|+|+-.+.
T Consensus 84 ~~~~rr~llvldncehl 100 (414)
T COG3903 84 RIGDRRALLVLDNCEHL 100 (414)
T ss_pred HHhhhhHHHHhcCcHHH
Confidence 88999999999996443
No 360
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.78 E-value=0.5 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+||+++|..|+||||.+..+.....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 37999999999999999988887553
No 361
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.77 E-value=0.089 Score=51.78 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+++|+|..|.||||+|+.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999999654
No 362
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=1.1 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|..|+||||+|+.+.+.+-
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 36678999999999999999988653
No 363
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.75 E-value=0.2 Score=56.04 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=47.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEeccccccc-CChHHHHHHHHHHHhcCCCccc---cch--------
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLII---WDV-------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~-~~l~~l~~~il~~~l~~~~~~~---~~~-------- 83 (847)
..++|.|..|.|||||++.+-+.... +..++.. +-.+ ..+.++.+++...-..++..-+ .+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~~--~~~vi~~----iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTEA--DVVVVGL----IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEE----EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 57999999999999999888764332 2333332 1111 1233333333222000111100 111
Q ss_pred hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.+++ ++|.||+++||+....+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~ 241 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTRFAM 241 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHHHH
Confidence 11223344555 68999999999976554
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.74 E-value=0.088 Score=49.29 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+++|+|..|.|||||.+.+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 489999999999999999988743
No 365
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.72 E-value=0.097 Score=47.52 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~ 37 (847)
|.|+|..|+|||||.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999987
No 366
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.72 E-value=0.093 Score=54.09 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
..-=|-++|++|.||||||..|-+.+...+.
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 3556779999999999999999998765443
No 367
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.70 E-value=0.094 Score=49.71 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.++|.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998877755
No 368
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.68 E-value=0.11 Score=54.86 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...-|-++|.+|.||||+|+.+.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456678999999999999999998653
No 369
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.64 E-value=1.8 Score=49.45 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+-++|..|+||||+|+.+-+.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6677999999999999999988653
No 370
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.64 E-value=0.53 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+||+++|..|+||||++..+.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 37999999999999999999998654
No 371
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.63 E-value=0.24 Score=60.43 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-+-|.++|..|.||||+|+++.+.....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 3568899999999999999999876543
No 372
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.62 E-value=0.25 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+++|+|..|.|||||++.+...+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998743
No 373
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.61 E-value=0.37 Score=52.34 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.+.|+.|.||||+|+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998775
No 374
>PRK06620 hypothetical protein; Validated
Probab=92.59 E-value=0.091 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+.+-|||+.|+|||+||+++.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999876643
No 375
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.57 E-value=0.28 Score=55.65 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=49.7
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCc-eeEEEeccccccc-CChHHHHHHHHHHHhcCCCccc---cch------
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEA-SSFLANVREVSVT-RGLVPLQEQLLSEVLMERDLII---WDV------ 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~-~~~v~~~~~~s~~-~~l~~l~~~il~~~l~~~~~~~---~~~------ 83 (847)
+-++|.|-.|+|||||| ..+.|+- .-+. ++++. +-++ ....++.+++...=..++..-+ .+.
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~----IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCA----IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEE----eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 57899999999999996 5677753 3454 45554 2222 2233444444332100111000 111
Q ss_pred --hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 --HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 --~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+-+++ ++|.+|+|+||+....+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~ 268 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHAR 268 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHHH
Confidence 11223455555 68999999999976544
No 376
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.56 E-value=0.16 Score=52.41 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=31.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHH-HHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLA-KVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~~~v~ 50 (847)
++...+..+-..-.++.|.|..|.||||+| +.+|+-.+.. ...+|++
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 344455545455579999999999999997 5555544433 4556665
No 377
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.55 E-value=0.49 Score=51.59 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=39.1
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHH-H-HHhc----cCCceeEEEecccccccCChHHHHH
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLY-N-TLKD----QFEASSFLANVREVSVTRGLVPLQE 66 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy-~-~i~~----~F~~~~~v~~~~~~s~~~~l~~l~~ 66 (847)
+.+-.+|..|-..-+++=|+|..|.|||||+..+. + .+.. .-..++|++ ....+...++.+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~ 179 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP 179 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH
Confidence 34555666555566888899999999999998774 3 3321 124678887 333444444433
No 378
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.54 E-value=0.092 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+++|.+|+|||||++++.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 379
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.52 E-value=0.21 Score=51.53 Aligned_cols=35 Identities=37% Similarity=0.434 Sum_probs=27.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
|.|+|||-|||||+|.|..+---+...-..+.-+.
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEec
Confidence 57999999999999999988876666655555554
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.51 E-value=0.36 Score=53.03 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=55.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE-EecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL-ANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v-~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
.+|.|.|..|.||||+++++.+.+..+...+++. .+..|...... ..+ ........ +.......++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~-----~~~----i~q~evg~-~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK-----RSL----INQREVGL-DTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc-----cce----EEccccCC-CCcCHHHHHHHhh
Confidence 6899999999999999999999887666665554 22212110000 000 01111111 1123456788888
Q ss_pred cCCcEEEEEcCCCCHHHHH
Q 003104 95 CRKRVLVILDDVDQLEQLQ 113 (847)
Q Consensus 95 ~~kk~LlVLDDV~~~~~l~ 113 (847)
+..-=.|++|.+.+.+...
T Consensus 193 r~~pd~i~vgEird~~~~~ 211 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVE 211 (343)
T ss_pred ccCCCEEEEeCCCCHHHHH
Confidence 8888899999998777654
No 381
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.50 E-value=0.1 Score=50.84 Aligned_cols=23 Identities=52% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+|+|.|+.|.||||+|+.+-++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999997754
No 382
>PTZ00035 Rad51 protein; Provisional
Probab=92.48 E-value=0.7 Score=50.52 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=28.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
+.+-.+|..|-..-+++-|+|..|.||||++..+.-
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 345566666656678999999999999999988764
No 383
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.48 E-value=0.089 Score=51.98 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
+|||.|+.|.||||+|+.+-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.48 E-value=0.19 Score=54.46 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...+|+++|..|+||||++..+...+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998876644
No 385
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.47 E-value=0.28 Score=60.13 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-.++.++|+.|+||||+|+++-+.+...|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35799999999999999999999876554
No 386
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.47 E-value=0.38 Score=54.37 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=24.8
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHh-------ccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLK-------DQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~-------~~F~~~~~v~ 50 (847)
+-++|.|-.|+|||||| -.|-|+.. ++-+.++|+.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva 232 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS 232 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE
Confidence 46899999999999997 55666431 2335566665
No 387
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.46 E-value=0.22 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.++|+|..|.|||||++.+.+...
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~ 162 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAK 162 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999998877443
No 388
>PRK14526 adenylate kinase; Provisional
Probab=92.45 E-value=0.56 Score=47.56 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|.|+|+.|.||||+|+.+-...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987653
No 389
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.43 E-value=0.66 Score=57.35 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..++.++|..|+||||+|+++.+.+..
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357889999999999999999986643
No 390
>COG4240 Predicted kinase [General function prediction only]
Probab=92.41 E-value=0.59 Score=46.67 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=48.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEecccccccCChHHHHHHHHHH---HhcCCCc-cccchhhhH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSE---VLMERDL-IIWDVHKGI 87 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~~~~~s~~~~l~~l~~~il~~---~l~~~~~-~~~~~~~~~ 87 (847)
.+--+|||.|.-|.||||+|-++|+.+..+. +..+.++ ....+.+ ..-|..+..+ ++..+.. ...+..-+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlYlt---hadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLYLT---HADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhhcc---hHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 4567999999999999999999999776665 5555443 1122222 2223333333 2333322 345555566
Q ss_pred HHHHHHhcCC
Q 003104 88 NLIRWRLCRK 97 (847)
Q Consensus 88 ~~i~~~L~~k 97 (847)
+.+....+++
T Consensus 124 nVLnai~~g~ 133 (300)
T COG4240 124 NVLNAIARGG 133 (300)
T ss_pred HHHHHHhcCC
Confidence 6666666666
No 391
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.39 E-value=0.16 Score=48.32 Aligned_cols=26 Identities=42% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+|++.|.+|+||||+++.+...+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48999999999999999998866443
No 392
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.61 Score=50.85 Aligned_cols=98 Identities=24% Similarity=0.256 Sum_probs=55.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~ 82 (847)
++.+.|..+--.=.+|.|=|-+||||+||.-.+..++..+- .+.||+ .|.| ....+++.+-+.- ...+..+..
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES--~~QiklRA~RL~~--~~~~l~l~a 153 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES--LQQIKLRADRLGL--PTNNLYLLA 153 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC--HHHHHHHHHHhCC--CccceEEeh
Confidence 34444443333336899999999999999999999887666 666665 2222 1122233332221 122333222
Q ss_pred hhhhHHHHHHHh-cCCcEEEEEcCCCC
Q 003104 83 VHKGINLIRWRL-CRKRVLVILDDVDQ 108 (847)
Q Consensus 83 ~~~~~~~i~~~L-~~kk~LlVLDDV~~ 108 (847)
... .+.|...+ ..|--++|+|-|..
T Consensus 154 Et~-~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETN-LEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hcC-HHHHHHHHHhcCCCEEEEeccce
Confidence 222 23344444 45778899999853
No 393
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.38 E-value=0.23 Score=56.05 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..++|.|..|.|||||++.+.+..
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999887753
No 394
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.38 E-value=0.55 Score=53.18 Aligned_cols=93 Identities=25% Similarity=0.258 Sum_probs=53.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEEEecccccccCChHHHHHHHHHH-HhcCC------Cccc---cchh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSE-VLMER------DLII---WDVH 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v~~~~~~s~~~~l~~l~~~il~~-~l~~~------~~~~---~~~~ 84 (847)
+-+||.|-.|+|||||+..+-..+.. +=+.++|+. +.|.. ....++.++++.. .+..+ ..-+ .+..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~l-IGERg--rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGERT--REGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEE-eccCc--hHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 57899999999999999988776432 226666654 32221 2234444444441 01111 1111 1111
Q ss_pred --------hhHHHHHHHhc--CC-cEEEEEcCCCCHHH
Q 003104 85 --------KGINLIRWRLC--RK-RVLVILDDVDQLEQ 111 (847)
Q Consensus 85 --------~~~~~i~~~L~--~k-k~LlVLDDV~~~~~ 111 (847)
..+..+.|+++ ++ .||+++||+-...+
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~ 276 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQ 276 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHH
Confidence 22345667774 44 99999999976654
No 395
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.35 E-value=0.097 Score=58.50 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.-++.|+|+|..|.||||||+++.+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999988753
No 396
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.34 E-value=0.39 Score=59.50 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=26.6
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++...|+... -.-+-+||.+|+||||+|+.+..++...
T Consensus 184 ~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 184 RTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred HHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 3444444432 2334489999999999999999987553
No 397
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.32 E-value=0.53 Score=51.37 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=34.1
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHh--c----cCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~--~----~F~~~~~v~ 50 (847)
+.+-.+|..|-..-.++-|+|.+|+||||+|..+.-... . .-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 345566665556668899999999999999987764321 1 112578887
No 398
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=92.29 E-value=0.3 Score=54.76 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++++|.|..|.|||||++.+.+..
T Consensus 176 qri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 176 QRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred cEEEEECCCCCCccHHHHHHhCCC
Confidence 689999999999999999888744
No 399
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.28 E-value=0.27 Score=50.64 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=34.3
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.+-++|..|-..=.++.|.|.+|.||||+|..+-.....+-+..+|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555555455689999999999999999986443333456677776
No 400
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.25 E-value=0.15 Score=48.94 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
-.||-.-|.+|.||||||.+++.++..+--
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 468888899999999999999998776543
No 401
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.21 E-value=0.1 Score=47.34 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~ 37 (847)
|+|+|+.|+|||||.+++.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999997
No 402
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.20 E-value=0.57 Score=51.77 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=62.6
Q ss_pred HHHHhHh--cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC--ceeEEEecccccccCChHHHHHHHHHHHhcCCCc
Q 003104 3 KMNGYLE--AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (847)
Q Consensus 3 ~i~~lL~--~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~--~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~ 78 (847)
.+.+++. .+.+..+-+-|.|-+|.|||.+...||.+....-. ..+++.. .+ -.....+.+.|++.++.+...
T Consensus 161 ~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc---~s-l~~~~aiF~kI~~~~~q~~~s 236 (529)
T KOG2227|consen 161 IVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC---TS-LTEASAIFKKIFSSLLQDLVS 236 (529)
T ss_pred HHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee---cc-ccchHHHHHHHHHHHHHHhcC
Confidence 3445553 35566778899999999999999999996543322 2234321 11 123455667777776444332
Q ss_pred cccchhhhHHHHHHHhcCC--cEEEEEcCCCCH
Q 003104 79 IIWDVHKGINLIRWRLCRK--RVLVILDDVDQL 109 (847)
Q Consensus 79 ~~~~~~~~~~~i~~~L~~k--k~LlVLDDV~~~ 109 (847)
.... .+....+.+..++. -+++|||..|..
T Consensus 237 ~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 237 PGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred Cchh-HHHHHHHHHHHhcccceEEEEechhhHH
Confidence 2211 33455666666555 488999998754
No 403
>CHL00176 ftsH cell division protein; Validated
Probab=92.17 E-value=0.38 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-|-++|++|.|||++|+++.+...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999988653
No 404
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.16 E-value=0.16 Score=56.48 Aligned_cols=28 Identities=43% Similarity=0.691 Sum_probs=25.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-+|+|+|..|.|||||++++..+++.++
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~~ 33 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSERF 33 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhCc
Confidence 5899999999999999999999988773
No 405
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.15 E-value=0.11 Score=52.77 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=26.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+...+. ...+.+.+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 61 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVD 61 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEEC
Confidence 5899999999999999999987443 335555553
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.13 E-value=0.21 Score=54.46 Aligned_cols=92 Identities=21% Similarity=0.166 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEeccccccc--CChHHHHHHHHHHHhcCCCccccchhhhHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT--RGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~--~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~ 92 (847)
-+.|.|+|..|.||||+++++-+.+... +..+-+++..|..-. .+...+ ...+...........+.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~~--------~~~~~~~~~~~~~~~~ll~~ 230 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVHL--------LASKGGQGRAKVTTQDLIEA 230 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEEE--------EecCCCCCcCcCcHHHHHHH
Confidence 4679999999999999999999877543 223334443333211 010000 00000000011234567788
Q ss_pred HhcCCcEEEEEcCCCCHHHHHHH
Q 003104 93 RLCRKRVLVILDDVDQLEQLQAL 115 (847)
Q Consensus 93 ~L~~kk~LlVLDDV~~~~~l~~L 115 (847)
.|+.+-=-||++.|...+.++.+
T Consensus 231 ~LR~~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 231 CLRLRPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred HhccCCCeEEEEecCCHHHHHHH
Confidence 88888888999999888766555
No 407
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.13 E-value=0.27 Score=56.99 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+=|-++|++|.||||+|+++.+...
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4477999999999999999988643
No 408
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.12 E-value=1.1 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|..|+||||+|+++.+.+-
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 45678999999999999999998653
No 409
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.11 E-value=0.92 Score=52.42 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+++.++|..|-..=.++-|.|.+|+||||||...-.....+-+.++|+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5666777776666689999999999999999988776655666677765
No 410
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.10 E-value=0.085 Score=29.96 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=3.3
Q ss_pred CCEEeecCC
Q 003104 566 LKILCLEKC 574 (847)
Q Consensus 566 L~~L~L~~c 574 (847)
|+.|+|++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444444
No 411
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.09 E-value=0.25 Score=52.03 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+-.+|..|-..-+++.|+|.+|.|||++|.+.-.+...+.+.+.|++
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555555567789999999999999999988776666799999987
No 412
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.04 E-value=0.12 Score=51.42 Aligned_cols=30 Identities=40% Similarity=0.553 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
.++|.|+|+.|+|||||++++.......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 368999999999999999999886543443
No 413
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.02 E-value=0.14 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-|-|+|.+|+||||+|+++.+....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4458999999999999999886543
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.98 E-value=1.1 Score=49.33 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=24.2
Q ss_pred eEEEEEEcCCCchHHH-HHHHHHHHH-hccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTT-LAKVLYNTL-KDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTT-LA~~vy~~i-~~~F~~~~~v~ 50 (847)
-+||.+||+.|||||| |||....-. ...=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 5899999999999975 666555432 23334455554
No 415
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.96 E-value=0.44 Score=53.35 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+-+||.|-.|+|||||+..+-++..
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhc
Confidence 5789999999999999999887543
No 416
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.94 E-value=0.34 Score=50.55 Aligned_cols=55 Identities=27% Similarity=0.331 Sum_probs=37.8
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEeccccccc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 58 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~ 58 (847)
++...+.....+..+|||-|.+|+||+||.-++-..+..+=..++-+ .|.+.|+.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl-AVDPSSp~ 93 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL-AVDPSSPF 93 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE-EECCCCCC
Confidence 34445555567789999999999999999999888765544433333 34444443
No 417
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.93 E-value=0.31 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+.++|.|..|.|||||++.+....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~ 180 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNA 180 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 588999999999999999988754
No 418
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.91 E-value=0.32 Score=54.56 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
-+++||.|..|.|||||++.+.+.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 368999999999999999988764
No 419
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.91 E-value=0.13 Score=49.85 Aligned_cols=21 Identities=43% Similarity=0.415 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~ 38 (847)
|+|.|..|.|||||++++...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 420
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.87 E-value=0.39 Score=47.99 Aligned_cols=26 Identities=46% Similarity=0.639 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|.|.|..|.||||+|+.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987654
No 421
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.13 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+.... ....+.+.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~ 60 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILID 60 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEC
Confidence 589999999999999999998643 2345555553
No 422
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.84 E-value=0.19 Score=55.82 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=26.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..++|+|+|..|.|||||++++...++.+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~ 232 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIAR 232 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999988764
No 423
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.84 E-value=0.35 Score=50.19 Aligned_cols=48 Identities=23% Similarity=0.420 Sum_probs=36.9
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHH-HHHHhccCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVL-YNTLKDQFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~v-y~~i~~~F~~~~~v~ 50 (847)
+.+-++|..|-..-+++-|.|.+|.||||+|..+ |+.+ .+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE
Confidence 4566667666666789999999999999999875 5555 4567778876
No 424
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.83 E-value=0.44 Score=53.81 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch-------
Q 003104 16 RFIGICGMGGIGKTTLAK-VLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~-~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~------- 83 (847)
+-++|.|-.|+||||||. .+-|+ ..-+.. +++. +.+. .....++.+++...=..++..-+ .+.
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q--~~~dv~cV~~~-IGer--~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQ--KGQNVICVYVA-IGQK--ASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhc--ccCCeEEEEEE-ecCC--chHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 478999999999999954 45554 234555 4443 3221 22334444444332100111000 010
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 -HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.|++ ++|.+|+|+||+....+
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~ 247 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQAQ 247 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHHHH
Confidence 01112344444 67999999999975543
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.83 E-value=0.13 Score=52.67 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+...+. .-.+.+++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~ 64 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVD 64 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEEC
Confidence 5899999999999999999987443 335556553
No 426
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.80 E-value=0.11 Score=52.82 Aligned_cols=26 Identities=46% Similarity=0.694 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
|+|+|.|-||+||||+|-.+-..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999998877665543
No 427
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.77 E-value=0.3 Score=54.86 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=47.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch--------h
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV--------H 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~--------~ 84 (847)
+.++|+|..|.|||||++.+.+... -+..++.. +.+ .......+.+.+...-.-.+..-+ .+. .
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~~--~dv~V~g~-Ig~--rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFTE--ADIIVVGL-IGE--RGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEE-eCc--CcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 5799999999999999988866321 23333322 111 112233333333332100111100 111 1
Q ss_pred hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 ~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
..+..+.|++ ++|.||+++||+-...+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~A~ 272 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRFAQ 272 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHHHH
Confidence 1123345555 68999999999976654
No 428
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.14 Score=52.22 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.. .+++|+|..|.|||||++.+...+. ...+.+++.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 57 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLN 57 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEC
Confidence 45 8999999999999999999987543 345666553
No 429
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.72 E-value=0.3 Score=52.59 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=25.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.....+|+|.|.+|.||||++..+-.....+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567999999999999999999988755443
No 430
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.72 E-value=0.17 Score=51.06 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|.|.|+.|.||||+|+.+.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999997643
No 431
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=91.69 E-value=0.2 Score=50.34 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.|+|.|..|.||||+++.+.+.+...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 68999999999999999999877654
No 432
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=91.68 E-value=0.18 Score=51.54 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=24.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++|+|+|..|+||||++.++..+++.+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~ 28 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKER 28 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhC
Confidence 689999999999999999999987765
No 433
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.63 E-value=0.13 Score=51.35 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+...+. ...+.+++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~ 52 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLID 52 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEEC
Confidence 5899999999999999999987433 235555553
No 434
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.62 E-value=0.14 Score=47.99 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
+.|-++|..|.|||||++++-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999987
No 435
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.60 E-value=0.16 Score=51.74 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|.|+.|.||||+|+.+..+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 436
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.59 E-value=0.36 Score=58.78 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.-.+|.++|..|+||||+|+.+...+...|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346899999999999999999998765444
No 437
>PRK14529 adenylate kinase; Provisional
Probab=91.59 E-value=0.94 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|.|.|+.|.||||+|+.+..+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 77899999999999999988653
No 438
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.57 E-value=0.13 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+|||.|..|.||||+|+.+...+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 6899999999999999999876643
No 439
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=91.56 E-value=0.21 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
...|+|+|.+|+|||||++.+.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34559999999999999998876
No 440
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=91.56 E-value=0.29 Score=46.96 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=28.7
Q ss_pred EEEEEEc-CCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICG-MGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~G-mgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
|+|++|| .||+||||+|..+-..+...-..++.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid 36 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLID 36 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999 7899999999999997776655567665
No 441
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.55 E-value=0.13 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy 36 (847)
.+++|+|..|.|||||.+.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999985
No 442
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.54 E-value=0.13 Score=54.84 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|+|+|-||+||||+|-.+--.+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 58999999999999999887665443
No 443
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.53 E-value=0.36 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
..|+|+|..|.|||||++.+..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.51 E-value=0.15 Score=50.22 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=25.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 58 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEW 58 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEE
Confidence 5899999999999999999887432 33455544
No 445
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.51 E-value=0.24 Score=54.65 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..-+|||.|..|.||||||+++...+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~ 238 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRV 238 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999999999999999999765543
No 446
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.48 E-value=0.14 Score=52.18 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 63 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFN 63 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 5899999999999999999997433 345666654
No 447
>PRK01184 hypothetical protein; Provisional
Probab=91.47 E-value=0.14 Score=50.69 Aligned_cols=18 Identities=44% Similarity=0.859 Sum_probs=16.8
Q ss_pred EEEEEEcCCCchHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAK 33 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~ 33 (847)
.+|+|.|+.|.||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999998
No 448
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.40 E-value=0.29 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
=+.++|.|..|.|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988764
No 449
>PRK07429 phosphoribulokinase; Provisional
Probab=91.37 E-value=0.25 Score=53.63 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...+-+|||.|..|.||||+|+.+...+...
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 3567899999999999999999999866543
No 450
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.33 E-value=0.15 Score=51.90 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+...+. ...+.+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~ 59 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLER-PDSGEILI 59 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE
Confidence 5899999999999999999987432 23455554
No 451
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.32 E-value=0.14 Score=50.06 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
-..|+|+|..|+|||||++++.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 345999999999999999999873
No 452
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.31 E-value=0.15 Score=51.93 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=27.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~ 62 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIA 62 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEC
Confidence 5899999999999999999987432 346666664
No 453
>PLN02200 adenylate kinase family protein
Probab=91.31 E-value=0.19 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
...+|.|.|++|.||||+|+.+-.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987754
No 454
>PRK14527 adenylate kinase; Provisional
Probab=91.31 E-value=0.17 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.-.+|.|.|.+|.||||+|+.+.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 455
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.29 E-value=0.15 Score=52.18 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..... ...+.+++
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~ 63 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLV 63 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 5899999999999999999987432 23555555
No 456
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=91.29 E-value=0.4 Score=54.89 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=46.4
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch-------
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~------- 83 (847)
+-++|.|-.|+|||||| ..+-++. .-+.. +|+. +.+. ......+.+++...=..++..-+ .+.
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~-IGer--~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~ 237 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVA-IGQK--ASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYL 237 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEE-ecCC--hHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHH
Confidence 57899999999999995 4444432 34554 4444 2111 11233344444332100111100 111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 -HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.|++ ++|.||+|+||+....+
T Consensus 238 a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~ 268 (502)
T PRK09281 238 APYAGCAMGEYFMDNGKDALIVYDDLSKQAV 268 (502)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCchHHHH
Confidence 01122334444 57999999999976543
No 457
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=91.29 E-value=0.15 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
+|||.||.|.||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998843
No 458
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.27 E-value=0.14 Score=54.42 Aligned_cols=26 Identities=46% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|+|+|-||+||||+|-.+--.+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57999999999999999887765543
No 459
>PRK13236 nitrogenase reductase; Reviewed
Probab=91.26 E-value=0.17 Score=54.40 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+++.|||.+.|-||+||||+|-.+--.+..+
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 3567999999999999999887766544443
No 460
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.26 E-value=2.8 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+.+-++|..|+||||+|+.+-..+-
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 36678999999999999998887653
No 461
>PLN02165 adenylate isopentenyltransferase
Probab=91.26 E-value=0.15 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|+|+|+.|+||||||..+...+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 35899999999999999999887654
No 462
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.23 E-value=0.15 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=26.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 60 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFD 60 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 5899999999999999999987432 345666654
No 463
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.22 E-value=0.26 Score=53.08 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
|+|-+.|-||+||||+|-+.--....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 67889999999999999776554433
No 464
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.34 Score=49.26 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=28.3
Q ss_pred cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEe
Q 003104 10 AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (847)
Q Consensus 10 ~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~ 51 (847)
.+-+--+=|-.+|++|.|||-.|++|.|+-. .||+.+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtd-----acfirv 242 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRV 242 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEee
Confidence 3444455677899999999999999999743 577764
No 465
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.21 E-value=0.15 Score=58.15 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.++||||-.|.|||||||.+-.-+..
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999885443
No 466
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.21 E-value=0.15 Score=51.96 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... .-.+.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~ 59 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVF 59 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEEC
Confidence 5899999999999999999987432 234555553
No 467
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.20 E-value=0.16 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+++|+|..|.|||||+++++--+
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999998643
No 468
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.19 E-value=0.15 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+|+|.+|+|||||++++.+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999876
No 469
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.16 E-value=0.16 Score=52.00 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=26.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-.. ...+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 62 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYIN 62 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 4899999999999999999998432 345555553
No 470
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.15 E-value=0.56 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHh
Q 003104 19 GICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 19 gI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-++|.+|+|||++|+.+..++.
T Consensus 211 LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 211 LLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999998764
No 471
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.10 E-value=0.17 Score=50.24 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.||.|+|+.|.|||||.|.+.. +...=.+.+++.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CcCCCCceEEEC
Confidence 6899999999999999998865 222235667765
No 472
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.10 E-value=0.15 Score=52.73 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|+.|.|||||.|.+..-++ .=.+.+++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~ 62 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLD 62 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEEC
Confidence 6899999999999999999998444 223556654
No 473
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.08 E-value=0.17 Score=52.49 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+...+. .-.+.+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~ 59 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLI 59 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 5899999999999999999987433 23455554
No 474
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.07 E-value=0.15 Score=28.94 Aligned_cols=17 Identities=47% Similarity=0.665 Sum_probs=10.6
Q ss_pred CCCCEEECcCCCCcccc
Q 003104 541 FSLEAIDLSGNNFFSLP 557 (847)
Q Consensus 541 ~sL~~L~Ls~n~l~~lp 557 (847)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47888888888888776
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.04 E-value=1.4 Score=46.75 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v~ 50 (847)
-.++.|.|.+|+||||+|..+......+ =..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3588899999999999999887655444 34566665
No 476
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.03 E-value=0.16 Score=50.87 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+...... -.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~ 60 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYK 60 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 48999999999999999999874332 24555554
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.03 E-value=0.16 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~ 70 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLV 70 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEEC
Confidence 5999999999999999999987432 345556553
No 478
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.01 E-value=0.25 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
+++.++|..|+|||||..++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999988874
No 479
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.01 E-value=0.84 Score=44.53 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=49.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhcC
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~~ 96 (847)
++-|.|..|.||||+|..+-.. .....+|+. ..+..+ .++++.+.... ..+ ..-+...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d-~em~~rI~~H~-~~R-~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFD-DEMAERIARHR-KRR-PAHWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCC-HHHHHHHHHHH-HhC-CCCceEeecHHHHHHHHHh
Confidence 3568999999999999987543 335667776 333333 34666655542 222 3334444555566666632
Q ss_pred --CcEEEEEcCCCCH
Q 003104 97 --KRVLVILDDVDQL 109 (847)
Q Consensus 97 --kk~LlVLDDV~~~ 109 (847)
+.-.|++|.+...
T Consensus 71 ~~~~~~VLIDclt~~ 85 (169)
T cd00544 71 LDPGDVVLIDCLTLW 85 (169)
T ss_pred cCCCCEEEEEcHhHH
Confidence 2336899998543
No 480
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.00 E-value=0.26 Score=52.39 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|+|.|-||+||||+|..+--.+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 68999999999999999887776654
No 481
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.99 E-value=0.18 Score=52.00 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh----ccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~----~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ..-.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 65 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD 65 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence 5899999999999999999998652 2345666553
No 482
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.99 E-value=0.43 Score=58.16 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.++-++|+.|+|||+||+++...+.
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhc
Confidence 45678999999999999999998763
No 483
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=90.96 E-value=0.36 Score=55.24 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCcc---ccch-------
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLI---IWDV------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~---~~~~------- 83 (847)
+-++|.|-.|+|||||| ..+.|+- .-+.. +++. +.+. ...+.++.+++...=..++..- ..+.
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~-IGer--~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~ 236 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQK--DSDVYCVYVA-IGQK--ASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYL 236 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhhc--CCCeEEEEEE-ccCC--hHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHH
Confidence 57899999999999996 5666642 44554 5554 2111 1223444444443211011110 0111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 -HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
...+..+.+++ ++|.||+|+||+....+
T Consensus 237 a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~ 267 (501)
T TIGR00962 237 APYTGCTMAEYFRDNGKHALIIYDDLSKHAV 267 (501)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecchHHHHH
Confidence 11122334444 57999999999976544
No 484
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=90.93 E-value=0.17 Score=56.98 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.+-|-++|..|.||||+|+++.+.....|
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 45677999999999999999999876554
No 485
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=90.85 E-value=0.16 Score=53.77 Aligned_cols=26 Identities=46% Similarity=0.687 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|+|.|-||+||||+|-.+-..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888899999999999888776553
No 486
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.81 E-value=0.85 Score=48.07 Aligned_cols=36 Identities=28% Similarity=0.090 Sum_probs=27.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+.+-++|+|..|.||||+++.+...++.. .+.+++
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~ 144 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGL 144 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEE
Confidence 446789999999999999999999866533 334444
No 487
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.78 E-value=0.18 Score=52.48 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... .-.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 62 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFG 62 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 5899999999999999999987432 234556554
No 488
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=90.77 E-value=0.19 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy 36 (847)
..++|.|.||.|.||||+|+.+-
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 34799999999999999999985
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.76 E-value=0.2 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|.|.|++|.||||+|+.+-.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 490
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.76 E-value=0.18 Score=52.34 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-.. .-.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 61 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLID 61 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEEC
Confidence 4899999999999999999987432 234555553
No 491
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=90.76 E-value=0.21 Score=57.17 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
...-+++.++|+.|+||||||+.+-+.+..
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 345689999999999999999999985543
No 492
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.76 E-value=0.31 Score=52.93 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++..++..+ .--.++-++|..|+||||+|+++++...
T Consensus 32 ~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 32 TFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 344444432 2246777899999999999999998764
No 493
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.74 E-value=0.19 Score=52.41 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ...+.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 62 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLE 62 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEEC
Confidence 5899999999999999999987432 235556553
No 494
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.74 E-value=0.18 Score=51.37 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+++|+|..|.|||||++.+..-+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 699999999999999999999743
No 495
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.71 E-value=0.19 Score=50.57 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+|+|+|..|.|||||.|.+-. ....=.+.+++.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~ 64 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFN 64 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc-ccCCCcceEEec
Confidence 5999999999999999999877 333334455554
No 496
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.71 E-value=0.19 Score=47.83 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=25.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCce
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~ 46 (847)
.|.||||-.|.|||||.+.+-.++...--..
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v 63 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence 5899999999999999999888765443333
No 497
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.70 E-value=0.19 Score=47.65 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~ 37 (847)
|.++|..|+|||||+.++.+
T Consensus 3 i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 498
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.69 E-value=0.59 Score=50.27 Aligned_cols=90 Identities=21% Similarity=0.138 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHH---HHHhcCCCccccchhhhHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL---SEVLMERDLIIWDVHKGINLI 90 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il---~~~l~~~~~~~~~~~~~~~~i 90 (847)
.-++|-|+|..|+||||||-.+....+..-..++|+. .....+...+ +.+- ++++- ......++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID----~e~~ld~~~a-~~lGvdl~rllv---~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID----AEHALDPEYA-ESLGVDLDRLLV---VQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE----SSS---HHHH-HHTT--GGGEEE---EE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec----CcccchhhHH-HhcCccccceEE---ecCCcHHHHHHHH
Confidence 3479999999999999999999998877777888887 3222222222 1111 11110 0112223333444
Q ss_pred HHHhc-CCcEEEEEcCCCCHHH
Q 003104 91 RWRLC-RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 91 ~~~L~-~kk~LlVLDDV~~~~~ 111 (847)
...++ +..-+||+|-|....-
T Consensus 124 e~lirsg~~~lVVvDSv~al~p 145 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAALVP 145 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-B-
T ss_pred HHHhhcccccEEEEecCcccCC
Confidence 44443 3456899999975543
No 499
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=90.68 E-value=0.33 Score=52.34 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.++|.|..|+|||+|++.+-+.. +-+..+++.
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~--~~dvvVyv~ 190 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS--NSDIVIYVG 190 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC--CCCEEEEEE
Confidence 478999999999999999888752 335566665
No 500
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.68 E-value=0.2 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|.|+|.+|+|||||++++.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
Done!