Query 003104
Match_columns 847
No_of_seqs 681 out of 5611
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.6E-31 2.3E-35 319.6 16.8 319 262-581 224-555 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-30 4.1E-35 317.3 17.0 336 259-596 198-549 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-30 6E-35 302.7 13.2 226 2-234 138-472 (549)
4 4eco_A Uncharacterized protein 100.0 2E-29 6.8E-34 299.7 17.1 220 261-482 81-390 (636)
5 3t6q_A CD180 antigen; protein- 100.0 7.6E-28 2.6E-32 285.3 26.2 333 261-595 33-435 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 2.4E-28 8.1E-33 295.9 21.8 219 260-481 322-631 (876)
7 4eco_A Uncharacterized protein 100.0 3.7E-28 1.3E-32 288.8 21.8 334 278-634 199-600 (636)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-27 7.5E-32 281.3 27.0 315 260-576 80-437 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-27 4.7E-32 283.0 24.1 355 260-634 55-534 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 8.9E-28 3E-32 284.7 22.0 383 261-666 32-541 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1.9E-27 6.6E-32 288.0 23.9 315 283-633 489-839 (876)
12 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-27 2.9E-31 286.4 26.9 325 260-590 23-406 (844)
13 4fmz_A Internalin; leucine ric 99.9 4.3E-26 1.5E-30 250.6 27.5 275 263-575 46-322 (347)
14 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-27 1.1E-31 276.6 17.1 175 261-436 26-210 (549)
15 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-26 1.6E-30 259.3 25.7 305 279-634 36-352 (457)
16 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-26 8.5E-31 267.0 23.7 331 261-634 21-481 (520)
17 4fmz_A Internalin; leucine ric 99.9 4.6E-26 1.6E-30 250.4 24.5 304 280-634 39-346 (347)
18 3v47_A TOLL-like receptor 5B a 99.9 1.4E-26 4.7E-31 264.5 21.0 337 285-634 30-408 (455)
19 2z63_A TOLL-like receptor 4, v 99.9 7.9E-27 2.7E-31 274.3 19.5 329 261-595 28-431 (570)
20 2id5_A Lingo-1, leucine rich r 99.9 5.3E-26 1.8E-30 261.3 25.3 310 288-634 14-333 (477)
21 3v47_A TOLL-like receptor 5B a 99.9 3E-26 1E-30 261.6 22.9 313 261-606 30-405 (455)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.2E-26 2.5E-30 265.7 26.5 331 261-634 52-510 (562)
23 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-26 9.9E-31 266.5 22.4 352 265-634 4-457 (520)
24 1ziw_A TOLL-like receptor 3; i 99.9 9.1E-26 3.1E-30 271.2 27.3 220 261-480 25-283 (680)
25 2z63_A TOLL-like receptor 4, v 99.9 1.7E-26 5.9E-31 271.4 18.5 358 259-634 50-531 (570)
26 2id5_A Lingo-1, leucine rich r 99.9 1.4E-25 4.8E-30 257.8 25.4 291 261-575 32-331 (477)
27 1o6v_A Internalin A; bacterial 99.9 2.7E-25 9.2E-30 254.6 26.2 273 261-574 46-319 (466)
28 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-26 1.5E-30 266.8 19.7 351 272-634 16-464 (549)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-25 4.6E-30 275.6 24.9 330 259-594 46-460 (844)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-25 7.4E-30 261.6 23.5 371 264-662 34-510 (562)
31 3o6n_A APL1; leucine-rich repe 99.9 3E-25 1E-29 248.2 22.5 309 283-643 43-361 (390)
32 3o6n_A APL1; leucine-rich repe 99.9 9.3E-25 3.2E-29 244.1 26.5 296 260-594 44-348 (390)
33 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-24 4.5E-29 261.1 28.9 312 262-574 74-464 (680)
34 3oja_B Anopheles plasmodium-re 99.9 6.7E-25 2.3E-29 259.1 22.3 311 283-642 49-366 (597)
35 3oja_B Anopheles plasmodium-re 99.9 2.5E-24 8.5E-29 254.2 26.6 296 261-595 51-355 (597)
36 1xku_A Decorin; proteoglycan, 99.9 6.2E-24 2.1E-28 231.7 26.7 244 307-581 32-279 (330)
37 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.4E-29 236.1 21.0 220 327-574 80-311 (328)
38 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-24 1.6E-28 233.0 24.3 284 307-632 34-331 (332)
39 1jl5_A Outer protein YOPM; leu 99.9 3.1E-24 1.1E-28 244.2 22.8 280 261-594 11-306 (454)
40 1jl5_A Outer protein YOPM; leu 99.9 3E-23 1E-27 236.0 30.2 330 262-634 72-409 (454)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.6E-28 239.9 25.5 281 305-635 41-332 (457)
42 1ogq_A PGIP-2, polygalacturona 99.9 2E-25 6.8E-30 241.6 10.3 227 329-582 51-286 (313)
43 1o6v_A Internalin A; bacterial 99.9 1.3E-23 4.3E-28 240.7 25.8 321 260-634 67-388 (466)
44 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-25 3.3E-29 236.3 15.1 249 306-581 50-308 (313)
45 1xku_A Decorin; proteoglycan, 99.9 4.2E-23 1.4E-27 225.1 27.2 263 284-576 30-305 (330)
46 1vt4_I APAF-1 related killer D 99.9 2.9E-25 1E-29 262.1 9.1 213 2-226 138-436 (1221)
47 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-23 1.1E-27 226.4 23.5 261 285-577 33-307 (332)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-23 4.9E-28 249.5 21.9 365 261-634 52-580 (635)
49 4fcg_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 227.9 20.5 221 349-605 79-310 (328)
50 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-22 2.5E-26 231.7 29.8 262 286-639 41-302 (622)
51 2z80_A TOLL-like receptor 2, v 99.9 1.9E-23 6.6E-28 230.1 14.6 272 283-575 29-312 (353)
52 3sfz_A APAF-1, apoptotic pepti 99.9 4.1E-24 1.4E-28 274.3 9.8 228 1-233 133-452 (1249)
53 3zyj_A Leucine-rich repeat-con 99.9 7.2E-22 2.5E-26 224.3 24.3 242 308-575 45-290 (440)
54 2z66_A Variable lymphocyte rec 99.9 2.9E-22 9.9E-27 216.0 19.9 239 310-575 11-259 (306)
55 2z66_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 220.5 14.9 243 288-554 10-261 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 9.7E-22 3.3E-26 224.1 24.1 241 308-575 56-301 (452)
57 4g8a_A TOLL-like receptor 4; l 99.9 9.2E-22 3.1E-26 233.9 22.6 132 285-416 52-191 (635)
58 3g06_A SSPH2 (leucine-rich rep 99.9 9E-21 3.1E-25 222.4 28.7 260 262-580 41-300 (622)
59 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-21 2.1E-25 203.4 23.0 218 332-575 15-236 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-21 4.9E-26 208.3 17.7 221 309-554 14-238 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 1.7E-20 5.7E-25 213.1 25.7 243 286-554 44-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 1.6E-20 5.5E-25 213.9 25.0 243 286-554 55-303 (452)
63 2z80_A TOLL-like receptor 2, v 99.9 4E-21 1.4E-25 211.5 18.6 261 309-605 34-310 (353)
64 1z6t_A APAF-1, apoptotic prote 99.9 4.8E-22 1.6E-26 234.6 10.0 250 2-258 134-496 (591)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-22 5.5E-27 219.2 3.9 215 327-577 33-250 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-22 6.6E-27 218.6 4.0 239 306-579 34-277 (317)
67 1wwl_A Monocyte differentiatio 99.8 2.9E-22 1E-26 216.6 4.9 239 307-575 44-307 (312)
68 3oja_A Leucine-rich immune mol 99.8 1.8E-20 6.1E-25 215.2 15.1 215 327-577 33-250 (487)
69 1z7x_W Ribonuclease inhibitor; 99.8 1.6E-22 5.5E-27 231.1 -4.7 346 261-635 3-412 (461)
70 2z62_A TOLL-like receptor 4, v 99.8 2.1E-19 7.1E-24 190.6 19.1 218 311-575 12-235 (276)
71 1wwl_A Monocyte differentiatio 99.8 7.4E-22 2.5E-26 213.5 -0.4 245 280-555 38-310 (312)
72 3oja_A Leucine-rich immune mol 99.8 2.9E-20 1E-24 213.4 11.3 231 307-572 35-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.8E-23 185.0 20.7 218 289-554 11-237 (276)
74 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-21 4.8E-26 223.2 -4.3 315 261-595 28-408 (461)
75 1p9a_G Platelet glycoprotein I 99.8 2.8E-18 9.6E-23 183.1 19.6 202 280-482 5-208 (290)
76 2o6q_A Variable lymphocyte rec 99.8 7.9E-18 2.7E-22 177.8 22.9 196 330-575 18-216 (270)
77 2o6q_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 178.2 22.0 198 285-482 16-218 (270)
78 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.9E-22 178.4 22.8 197 347-575 6-206 (290)
79 2ast_B S-phase kinase-associat 99.8 4.2E-20 1.4E-24 201.7 3.9 222 329-574 48-282 (336)
80 2xwt_C Thyrotropin receptor; s 99.8 1.8E-18 6E-23 179.3 15.9 205 318-576 23-238 (239)
81 3rfs_A Internalin B, repeat mo 99.8 4.2E-19 1.5E-23 187.8 11.2 199 349-582 39-240 (272)
82 4ay9_X Follicle-stimulating ho 99.8 4.6E-18 1.6E-22 186.8 19.9 223 309-582 12-241 (350)
83 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 181.3 16.0 204 328-565 41-247 (272)
84 1h6u_A Internalin H; cell adhe 99.8 4.4E-18 1.5E-22 183.4 15.8 195 349-581 39-233 (308)
85 1h6u_A Internalin H; cell adhe 99.8 9.9E-18 3.4E-22 180.6 17.2 196 326-558 39-234 (308)
86 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.1E-24 198.1 2.2 230 328-582 70-311 (336)
87 4glp_A Monocyte differentiatio 99.8 5.3E-18 1.8E-22 183.0 14.9 226 326-576 62-306 (310)
88 2ca6_A RAN GTPase-activating p 99.7 1.3E-19 4.6E-24 201.9 -1.4 238 319-576 22-315 (386)
89 2xwt_C Thyrotropin receptor; s 99.7 3.7E-17 1.3E-21 169.3 16.8 197 375-598 32-239 (239)
90 3ogk_B Coronatine-insensitive 99.7 6.3E-20 2.2E-24 216.5 -5.8 195 282-478 109-327 (592)
91 3ogk_B Coronatine-insensitive 99.7 2.1E-19 7.1E-24 212.0 -3.3 197 282-479 161-388 (592)
92 3m19_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 162.0 19.3 175 307-482 15-192 (251)
93 2p1m_B Transport inhibitor res 99.7 2.8E-19 9.5E-24 211.0 -7.9 196 281-479 101-324 (594)
94 3m19_A Variable lymphocyte rec 99.7 7.4E-16 2.5E-20 160.7 18.8 152 328-481 14-167 (251)
95 2ca6_A RAN GTPase-activating p 99.7 1.4E-18 4.9E-23 193.5 -2.2 228 329-575 10-285 (386)
96 4ay9_X Follicle-stimulating ho 99.7 3.4E-16 1.1E-20 171.9 16.5 238 332-632 13-257 (350)
97 4glp_A Monocyte differentiatio 99.7 9.8E-17 3.3E-21 173.0 11.2 206 351-581 64-288 (310)
98 3cvr_A Invasion plasmid antige 99.7 8.3E-16 2.8E-20 178.1 18.0 188 329-563 60-253 (571)
99 3goz_A Leucine-rich repeat-con 99.6 8.7E-18 3E-22 185.5 -0.3 152 329-480 52-236 (362)
100 3goz_A Leucine-rich repeat-con 99.6 1.4E-17 4.6E-22 183.9 1.0 229 327-575 21-295 (362)
101 4ezg_A Putative uncharacterize 99.6 4.3E-16 1.5E-20 156.1 11.8 152 326-481 42-193 (197)
102 3cvr_A Invasion plasmid antige 99.6 1.9E-15 6.4E-20 175.1 17.4 178 286-483 60-244 (571)
103 2p1m_B Transport inhibitor res 99.6 1.1E-18 3.8E-23 205.8 -10.5 360 261-634 105-519 (594)
104 1h6t_A Internalin B; cell adhe 99.6 2.9E-15 9.9E-20 159.8 14.3 169 348-575 43-211 (291)
105 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 149.6 14.2 146 332-479 11-158 (208)
106 1h6t_A Internalin B; cell adhe 99.6 5.7E-15 1.9E-19 157.6 15.3 165 307-480 47-211 (291)
107 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 146.2 14.3 175 289-470 11-190 (208)
108 1m9s_A Internalin B; cell inva 99.6 2.3E-15 7.8E-20 176.3 9.5 39 513-554 172-210 (605)
109 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6.3E-22 192.9 -10.6 207 326-571 347-567 (567)
110 1m9s_A Internalin B; cell inva 99.5 3.4E-14 1.2E-18 166.4 16.7 167 306-481 43-209 (605)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 5.1E-14 1.7E-18 143.6 15.8 148 310-458 15-165 (220)
112 4ezg_A Putative uncharacterize 99.5 3.1E-14 1.1E-18 142.5 13.6 149 307-459 45-194 (197)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 5.4E-14 1.8E-18 143.4 15.0 150 331-482 14-166 (220)
114 2v9t_B SLIT homolog 2 protein 99.5 7.8E-14 2.7E-18 142.2 15.9 145 333-480 16-163 (220)
115 2v9t_B SLIT homolog 2 protein 99.5 8.5E-14 2.9E-18 141.9 15.7 149 309-459 14-165 (220)
116 1xeu_A Internalin C; cellular 99.5 1.8E-14 6E-19 151.3 10.1 166 373-575 18-183 (263)
117 2xot_A Amphoterin-induced prot 99.5 6.3E-14 2.1E-18 154.4 13.9 171 309-481 21-201 (361)
118 3e6j_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 140.0 16.0 144 333-480 24-170 (229)
119 3e6j_A Variable lymphocyte rec 99.5 2.5E-13 8.5E-18 139.4 16.5 149 309-459 22-172 (229)
120 1dce_A Protein (RAB geranylger 99.5 7.3E-16 2.5E-20 179.4 -3.7 180 370-581 345-549 (567)
121 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.2E-18 152.0 13.0 171 288-459 21-202 (361)
122 1xeu_A Internalin C; cellular 99.5 9.8E-14 3.3E-18 145.6 9.1 162 309-480 22-183 (263)
123 2ell_A Acidic leucine-rich nuc 99.4 2.3E-13 7.9E-18 132.3 10.1 136 327-464 23-165 (168)
124 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.5E-17 126.9 10.5 127 422-575 24-158 (168)
125 4b8c_D Glucose-repressible alc 99.4 2.1E-13 7.2E-18 163.6 5.7 110 370-482 220-329 (727)
126 1w8a_A SLIT protein; signaling 99.4 2.6E-12 9E-17 127.8 12.3 125 332-458 12-138 (192)
127 4b8c_D Glucose-repressible alc 99.3 3.4E-13 1.2E-17 161.9 4.8 127 351-479 173-303 (727)
128 1w8a_A SLIT protein; signaling 99.3 7.7E-12 2.6E-16 124.4 13.8 129 309-438 11-142 (192)
129 2je0_A Acidic leucine-rich nuc 99.3 1.3E-12 4.4E-17 124.2 7.5 125 328-477 17-148 (149)
130 3sb4_A Hypothetical leucine ri 99.3 5.2E-12 1.8E-16 137.1 12.3 251 284-570 48-327 (329)
131 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 121.4 7.8 109 373-483 16-127 (149)
132 2wfh_A SLIT homolog 2 protein 99.3 2.4E-11 8.1E-16 121.0 14.2 123 309-433 13-137 (193)
133 2wfh_A SLIT homolog 2 protein 99.3 2.5E-11 8.6E-16 120.8 12.2 124 331-480 13-137 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.5E-16 120.9 8.4 130 326-459 17-153 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.1E-16 119.5 8.4 130 346-480 14-151 (176)
136 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 113.9 14.0 126 332-459 11-137 (177)
137 2o6r_A Variable lymphocyte rec 99.2 2.2E-10 7.6E-15 112.1 13.5 129 308-438 9-140 (177)
138 1ds9_A Outer arm dynein; leuci 99.1 2.6E-13 8.7E-18 135.9 -9.9 125 417-570 43-180 (198)
139 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8.1E-15 123.9 11.9 55 516-573 226-283 (329)
140 1ds9_A Outer arm dynein; leuci 99.0 5.1E-12 1.7E-16 126.4 -5.3 133 339-475 36-180 (198)
141 4fs7_A Uncharacterized protein 99.0 2.2E-08 7.4E-13 111.3 23.3 232 347-625 158-392 (394)
142 4fdw_A Leucine rich hypothetic 99.0 2.8E-08 9.5E-13 110.4 21.3 211 329-574 158-380 (401)
143 3g39_A Variable lymphocyte rec 98.9 6.1E-09 2.1E-13 101.1 11.5 52 332-385 13-65 (170)
144 2r9u_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 100.5 11.3 74 332-408 16-91 (174)
145 4fdw_A Leucine rich hypothetic 98.9 8E-08 2.7E-12 106.7 20.3 212 328-575 135-356 (401)
146 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.6E-13 98.5 12.2 106 354-462 15-121 (174)
147 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.4E-13 98.2 12.0 105 353-459 11-115 (170)
148 4fs7_A Uncharacterized protein 98.8 1.5E-07 5.2E-12 104.4 18.5 104 512-631 272-376 (394)
149 3un9_A NLR family member X1; l 98.6 1.2E-09 4E-14 120.2 -4.6 36 539-574 209-249 (372)
150 3un9_A NLR family member X1; l 98.6 2.1E-09 7.2E-14 118.2 -3.1 131 351-481 101-251 (372)
151 2ifg_A High affinity nerve gro 98.6 1.3E-07 4.4E-12 103.0 10.1 104 378-482 12-116 (347)
152 2ifg_A High affinity nerve gro 98.5 2.7E-07 9.1E-12 100.5 11.3 76 333-409 13-91 (347)
153 2ra8_A Uncharacterized protein 98.5 6.1E-08 2.1E-12 105.7 5.8 144 414-575 164-318 (362)
154 4gt6_A Cell surface protein; l 98.5 6E-06 2.1E-10 91.4 21.1 108 512-633 261-369 (394)
155 2ra8_A Uncharacterized protein 98.4 1.5E-07 5E-12 102.8 4.5 136 343-480 164-318 (362)
156 4h09_A Hypothetical leucine ri 98.4 4.8E-05 1.6E-09 83.6 24.5 279 260-572 45-341 (379)
157 1w5s_A Origin recognition comp 98.3 8.2E-07 2.8E-11 99.0 9.2 91 15-109 52-150 (412)
158 4gt6_A Cell surface protein; l 98.3 4.4E-05 1.5E-09 84.4 22.8 258 326-632 112-389 (394)
159 2qby_B CDC6 homolog 3, cell di 98.1 8.3E-06 2.8E-10 89.9 10.2 104 3-110 31-146 (384)
160 4h09_A Hypothetical leucine ri 98.1 0.00036 1.2E-08 76.5 23.4 82 512-605 259-342 (379)
161 2v1u_A Cell division control p 98.0 1.1E-05 3.8E-10 88.7 10.0 105 2-110 29-143 (387)
162 2qby_A CDC6 homolog 1, cell di 97.9 1.1E-05 3.8E-10 88.7 6.5 102 3-109 31-140 (386)
163 1fnn_A CDC6P, cell division co 97.8 6E-05 2E-09 83.0 11.2 91 14-109 43-137 (389)
164 3e4g_A ATP synthase subunit S, 97.8 7.6E-06 2.6E-10 78.6 2.8 36 542-578 115-153 (176)
165 2qen_A Walker-type ATPase; unk 97.8 2.5E-05 8.4E-10 84.6 6.6 98 2-109 22-140 (350)
166 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6E-10 76.1 3.4 42 321-362 53-96 (176)
167 1io0_A Tropomodulin; LRR prote 97.6 9.8E-06 3.3E-10 79.4 1.1 61 515-575 92-162 (185)
168 1io0_A Tropomodulin; LRR prote 97.6 1.7E-05 5.8E-10 77.7 2.3 61 420-480 91-162 (185)
169 2chg_A Replication factor C sm 97.5 0.00097 3.3E-08 66.5 14.3 46 2-49 27-72 (226)
170 2w58_A DNAI, primosome compone 97.5 0.00018 6.2E-09 71.3 8.4 35 16-50 55-89 (202)
171 2fna_A Conserved hypothetical 97.4 0.00024 8.3E-09 76.9 9.1 32 16-50 31-62 (357)
172 3te6_A Regulatory protein SIR3 97.4 0.00057 2E-08 72.3 10.3 94 13-109 43-144 (318)
173 1jbk_A CLPB protein; beta barr 97.4 0.00036 1.2E-08 67.8 8.1 37 3-41 33-69 (195)
174 3rw6_A Nuclear RNA export fact 97.2 0.00016 5.6E-09 74.6 4.0 36 328-363 170-208 (267)
175 3rw6_A Nuclear RNA export fact 97.2 0.00025 8.5E-09 73.2 5.4 68 513-581 167-237 (267)
176 2p65_A Hypothetical protein PF 97.2 0.00065 2.2E-08 65.7 8.2 27 15-41 43-69 (187)
177 1njg_A DNA polymerase III subu 97.2 0.00058 2E-08 69.1 7.7 40 3-43 34-73 (250)
178 3ec2_A DNA replication protein 97.2 0.00078 2.7E-08 65.3 8.0 26 15-40 38-63 (180)
179 1sxj_B Activator 1 37 kDa subu 97.1 0.0022 7.4E-08 68.3 11.9 37 3-41 32-68 (323)
180 1iqp_A RFCS; clamp loader, ext 96.9 0.0035 1.2E-07 66.8 11.1 38 3-42 36-73 (327)
181 2z4s_A Chromosomal replication 96.9 0.00081 2.8E-08 75.2 6.2 76 15-108 130-205 (440)
182 1l8q_A Chromosomal replication 96.7 0.0034 1.2E-07 67.1 8.5 29 14-42 36-64 (324)
183 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0025 8.4E-08 67.0 6.6 71 16-109 124-194 (331)
184 2kjq_A DNAA-related protein; s 96.5 0.0018 6.1E-08 60.6 4.6 35 16-50 37-71 (149)
185 2cvh_A DNA repair and recombin 96.4 0.0095 3.3E-07 59.3 9.4 45 3-50 8-52 (220)
186 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0098 3.4E-07 61.1 9.1 28 15-42 39-66 (262)
187 3t15_A Ribulose bisphosphate c 96.3 0.0026 8.8E-08 67.0 4.3 30 13-42 34-63 (293)
188 3cf0_A Transitional endoplasmi 96.0 0.016 5.3E-07 61.2 9.2 28 13-40 47-74 (301)
189 3pvs_A Replication-associated 96.0 0.02 6.8E-07 63.8 10.2 30 14-43 49-78 (447)
190 3uk6_A RUVB-like 2; hexameric 96.0 0.017 5.7E-07 62.7 9.3 36 6-41 61-96 (368)
191 2qgz_A Helicase loader, putati 96.0 0.012 4.2E-07 62.2 7.9 36 15-50 152-188 (308)
192 3h4m_A Proteasome-activating n 96.0 0.0053 1.8E-07 64.1 5.0 29 14-42 50-78 (285)
193 1d2n_A N-ethylmaleimide-sensit 95.9 0.01 3.4E-07 61.6 6.8 30 12-41 61-90 (272)
194 1sxj_D Activator 1 41 kDa subu 95.9 0.039 1.3E-06 59.3 11.5 23 18-40 61-83 (353)
195 1jr3_A DNA polymerase III subu 95.8 0.046 1.6E-06 59.2 11.7 38 3-41 27-64 (373)
196 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.02 6.8E-07 61.0 8.4 25 15-39 45-69 (322)
197 1sxj_E Activator 1 40 kDa subu 95.7 0.096 3.3E-06 56.2 13.9 23 18-40 39-61 (354)
198 2chq_A Replication factor C sm 95.7 0.011 3.6E-07 62.7 6.1 24 17-40 40-63 (319)
199 1sxj_A Activator 1 95 kDa subu 95.6 0.012 4E-07 67.2 6.5 25 15-39 77-101 (516)
200 1n0w_A DNA repair protein RAD5 95.5 0.022 7.5E-07 57.6 7.5 49 2-50 11-65 (243)
201 3bos_A Putative DNA replicatio 95.5 0.011 3.9E-07 59.5 5.2 37 14-50 51-87 (242)
202 3syl_A Protein CBBX; photosynt 95.5 0.02 6.8E-07 60.4 7.3 28 14-41 66-93 (309)
203 1sky_E F1-ATPase, F1-ATP synth 95.5 0.025 8.5E-07 62.6 8.0 34 17-50 153-187 (473)
204 3lw7_A Adenylate kinase relate 95.4 0.0067 2.3E-07 57.8 3.1 22 16-38 2-23 (179)
205 3c8u_A Fructokinase; YP_612366 95.4 0.0089 3E-07 59.2 4.1 29 12-40 19-47 (208)
206 1odf_A YGR205W, hypothetical 3 95.4 0.014 4.8E-07 61.0 5.7 31 11-41 27-57 (290)
207 3b9p_A CG5977-PA, isoform A; A 95.4 0.024 8.2E-07 59.4 7.6 27 15-41 54-80 (297)
208 3kb2_A SPBC2 prophage-derived 95.4 0.0079 2.7E-07 57.3 3.3 25 16-40 2-26 (173)
209 1v5w_A DMC1, meiotic recombina 95.4 0.056 1.9E-06 58.0 10.3 48 3-50 110-163 (343)
210 3hr8_A Protein RECA; alpha and 95.3 0.033 1.1E-06 59.8 8.3 48 3-50 48-96 (356)
211 1hqc_A RUVB; extended AAA-ATPa 95.3 0.0086 3E-07 63.7 3.8 27 15-41 38-64 (324)
212 1qhx_A CPT, protein (chloramph 95.3 0.0071 2.4E-07 58.1 2.8 25 16-40 4-28 (178)
213 3vaa_A Shikimate kinase, SK; s 95.3 0.009 3.1E-07 58.7 3.4 26 15-40 25-50 (199)
214 3d8b_A Fidgetin-like protein 1 95.3 0.022 7.5E-07 61.6 6.8 26 15-40 117-142 (357)
215 2x8a_A Nuclear valosin-contain 95.2 0.032 1.1E-06 57.8 7.6 24 18-41 47-70 (274)
216 3ice_A Transcription terminati 95.2 0.051 1.8E-06 58.2 8.9 26 16-41 175-200 (422)
217 2qp9_X Vacuolar protein sortin 95.1 0.032 1.1E-06 60.2 7.5 26 16-41 85-110 (355)
218 1kgd_A CASK, peripheral plasma 95.1 0.009 3.1E-07 57.7 2.7 25 16-40 6-30 (180)
219 1zp6_A Hypothetical protein AT 95.1 0.01 3.6E-07 57.6 3.2 23 16-38 10-32 (191)
220 3eie_A Vacuolar protein sortin 95.1 0.015 5.2E-07 61.9 4.7 28 15-42 51-78 (322)
221 3uie_A Adenylyl-sulfate kinase 95.1 0.021 7E-07 56.1 5.3 26 15-40 25-50 (200)
222 1a5t_A Delta prime, HOLB; zinc 95.0 0.14 4.8E-06 54.6 12.2 27 15-41 24-50 (334)
223 3trf_A Shikimate kinase, SK; a 95.0 0.012 4E-07 56.9 3.3 25 16-40 6-30 (185)
224 1xjc_A MOBB protein homolog; s 94.9 0.021 7.2E-07 54.3 4.7 29 14-42 3-31 (169)
225 2bdt_A BH3686; alpha-beta prot 94.9 0.021 7.1E-07 55.4 4.8 31 16-50 3-33 (189)
226 4eun_A Thermoresistant glucoki 94.8 0.023 7.7E-07 55.9 4.7 25 15-39 29-53 (200)
227 3a00_A Guanylate kinase, GMP k 94.8 0.013 4.5E-07 56.8 2.9 31 16-46 2-32 (186)
228 3n70_A Transport activator; si 94.7 0.012 4E-07 54.6 2.3 23 17-39 26-48 (145)
229 1zuh_A Shikimate kinase; alpha 94.7 0.016 5.6E-07 55.0 3.4 27 14-40 6-32 (168)
230 1kag_A SKI, shikimate kinase I 94.7 0.013 4.4E-07 55.9 2.7 25 16-40 5-29 (173)
231 1knq_A Gluconate kinase; ALFA/ 94.7 0.02 6.9E-07 54.7 4.0 25 15-39 8-32 (175)
232 4fcw_A Chaperone protein CLPB; 94.7 0.079 2.7E-06 55.7 9.0 27 15-41 47-73 (311)
233 2ce7_A Cell division protein F 94.7 0.048 1.6E-06 61.0 7.5 26 17-42 51-76 (476)
234 2yvu_A Probable adenylyl-sulfa 94.6 0.031 1.1E-06 54.0 5.3 27 15-41 13-39 (186)
235 2jaq_A Deoxyguanosine kinase; 94.6 0.017 5.9E-07 56.6 3.4 24 17-40 2-25 (205)
236 2dhr_A FTSH; AAA+ protein, hex 94.6 0.032 1.1E-06 62.8 5.9 23 18-40 67-89 (499)
237 1nks_A Adenylate kinase; therm 94.6 0.033 1.1E-06 53.9 5.4 26 16-41 2-27 (194)
238 1ly1_A Polynucleotide kinase; 94.6 0.02 6.7E-07 54.9 3.7 22 16-37 3-24 (181)
239 2zan_A Vacuolar protein sortin 94.6 0.05 1.7E-06 60.7 7.4 25 15-39 167-191 (444)
240 3iij_A Coilin-interacting nucl 94.6 0.014 4.8E-07 56.2 2.6 25 15-39 11-35 (180)
241 3u61_B DNA polymerase accessor 94.5 0.054 1.8E-06 57.5 7.3 37 3-40 37-73 (324)
242 2z43_A DNA repair and recombin 94.4 0.076 2.6E-06 56.4 8.2 47 4-50 96-148 (324)
243 2ga8_A Hypothetical 39.9 kDa p 94.4 0.025 8.5E-07 60.3 4.3 41 3-43 10-52 (359)
244 1rz3_A Hypothetical protein rb 94.4 0.053 1.8E-06 53.2 6.5 28 13-40 20-47 (201)
245 1ex7_A Guanylate kinase; subst 94.4 0.014 4.7E-07 56.6 2.0 30 16-45 2-31 (186)
246 1u94_A RECA protein, recombina 94.4 0.044 1.5E-06 58.9 6.2 36 15-50 63-98 (356)
247 3t61_A Gluconokinase; PSI-biol 94.3 0.02 6.9E-07 56.2 3.2 24 16-39 19-42 (202)
248 4gp7_A Metallophosphoesterase; 94.3 0.019 6.5E-07 54.9 2.8 21 16-36 10-30 (171)
249 2qt1_A Nicotinamide riboside k 94.2 0.022 7.6E-07 56.2 3.3 26 13-38 19-44 (207)
250 1kht_A Adenylate kinase; phosp 94.2 0.026 8.8E-07 54.7 3.6 26 16-41 4-29 (192)
251 3tr0_A Guanylate kinase, GMP k 94.2 0.024 8.1E-07 55.7 3.4 24 16-39 8-31 (205)
252 2rhm_A Putative kinase; P-loop 94.2 0.028 9.7E-07 54.5 3.9 25 15-39 5-29 (193)
253 1via_A Shikimate kinase; struc 94.2 0.021 7.3E-07 54.6 3.0 24 17-40 6-29 (175)
254 3rfe_A Platelet glycoprotein I 94.2 0.09 3.1E-06 47.6 6.9 55 519-575 11-66 (130)
255 2if2_A Dephospho-COA kinase; a 94.2 0.024 8.2E-07 55.7 3.3 22 16-37 2-23 (204)
256 1cke_A CK, MSSA, protein (cyti 94.2 0.027 9.3E-07 56.3 3.8 24 16-39 6-29 (227)
257 2ze6_A Isopentenyl transferase 94.1 0.028 9.6E-07 57.5 3.9 25 16-40 2-26 (253)
258 1qvr_A CLPB protein; coiled co 94.1 0.062 2.1E-06 65.2 7.5 37 3-41 181-217 (854)
259 1ye8_A Protein THEP1, hypothet 94.1 0.03 1E-06 53.9 3.8 24 17-40 2-25 (178)
260 3asz_A Uridine kinase; cytidin 94.1 0.027 9.2E-07 55.7 3.6 27 14-40 5-31 (211)
261 1jjv_A Dephospho-COA kinase; P 94.1 0.025 8.5E-07 55.7 3.3 22 16-37 3-24 (206)
262 3fwy_A Light-independent proto 94.1 0.026 8.7E-07 59.7 3.5 30 13-42 46-75 (314)
263 1uf9_A TT1252 protein; P-loop, 94.1 0.031 1E-06 54.8 3.8 26 13-38 6-31 (203)
264 1ukz_A Uridylate kinase; trans 94.0 0.036 1.2E-06 54.4 4.2 27 13-39 13-39 (203)
265 2j41_A Guanylate kinase; GMP, 94.0 0.028 9.5E-07 55.2 3.4 24 16-39 7-30 (207)
266 2pt5_A Shikimate kinase, SK; a 94.0 0.032 1.1E-06 52.8 3.8 24 17-40 2-25 (168)
267 2qor_A Guanylate kinase; phosp 94.0 0.022 7.6E-07 56.1 2.7 26 15-40 12-37 (204)
268 3tau_A Guanylate kinase, GMP k 94.0 0.026 8.7E-07 55.9 3.1 27 15-41 8-34 (208)
269 2iyv_A Shikimate kinase, SK; t 94.0 0.026 8.7E-07 54.5 3.0 24 17-40 4-27 (184)
270 1tev_A UMP-CMP kinase; ploop, 94.0 0.035 1.2E-06 53.9 4.0 24 16-39 4-27 (196)
271 3ney_A 55 kDa erythrocyte memb 93.9 0.024 8.1E-07 55.4 2.7 29 15-43 19-47 (197)
272 1y63_A LMAJ004144AAA protein; 93.9 0.033 1.1E-06 53.9 3.6 24 15-38 10-33 (184)
273 1in4_A RUVB, holliday junction 93.9 0.025 8.4E-07 60.6 2.9 27 15-41 51-77 (334)
274 4a74_A DNA repair and recombin 93.9 0.055 1.9E-06 54.0 5.4 48 3-50 13-66 (231)
275 3dm5_A SRP54, signal recogniti 93.9 0.13 4.6E-06 56.5 8.8 28 15-42 100-127 (443)
276 3cm0_A Adenylate kinase; ATP-b 93.8 0.036 1.2E-06 53.5 3.8 24 16-39 5-28 (186)
277 1lvg_A Guanylate kinase, GMP k 93.8 0.024 8.3E-07 55.6 2.5 25 16-40 5-29 (198)
278 1e6c_A Shikimate kinase; phosp 93.8 0.026 8.9E-07 53.7 2.7 25 16-40 3-27 (173)
279 1xp8_A RECA protein, recombina 93.8 0.097 3.3E-06 56.5 7.4 36 15-50 74-109 (366)
280 3rfe_A Platelet glycoprotein I 93.8 0.095 3.2E-06 47.4 6.3 50 311-361 13-65 (130)
281 1zu4_A FTSY; GTPase, signal re 93.8 0.086 3E-06 55.8 6.9 36 14-50 104-139 (320)
282 2c9o_A RUVB-like 1; hexameric 93.8 0.05 1.7E-06 60.9 5.3 36 7-42 55-90 (456)
283 3bh0_A DNAB-like replicative h 93.7 0.25 8.4E-06 52.2 10.4 47 3-50 57-103 (315)
284 3vfd_A Spastin; ATPase, microt 93.7 0.091 3.1E-06 57.4 7.3 26 15-40 148-173 (389)
285 2c95_A Adenylate kinase 1; tra 93.7 0.033 1.1E-06 54.1 3.4 24 16-39 10-33 (196)
286 1lv7_A FTSH; alpha/beta domain 93.7 0.034 1.2E-06 56.9 3.5 27 16-42 46-72 (257)
287 1qf9_A UMP/CMP kinase, protein 93.7 0.041 1.4E-06 53.3 3.9 25 15-39 6-30 (194)
288 3aez_A Pantothenate kinase; tr 93.7 0.04 1.4E-06 58.2 4.1 29 13-41 88-116 (312)
289 3kl4_A SRP54, signal recogniti 93.7 0.15 5.2E-06 56.1 8.9 28 15-42 97-124 (433)
290 2bbw_A Adenylate kinase 4, AK4 93.7 0.038 1.3E-06 56.2 3.8 25 15-39 27-51 (246)
291 2px0_A Flagellar biosynthesis 93.7 0.25 8.6E-06 51.6 10.2 26 15-40 105-130 (296)
292 1uj2_A Uridine-cytidine kinase 93.7 0.038 1.3E-06 56.4 3.8 28 13-40 20-47 (252)
293 2plr_A DTMP kinase, probable t 93.7 0.065 2.2E-06 52.7 5.4 28 16-43 5-32 (213)
294 2bwj_A Adenylate kinase 5; pho 93.6 0.037 1.3E-06 54.0 3.5 25 16-40 13-37 (199)
295 1r6b_X CLPA protein; AAA+, N-t 93.6 0.13 4.3E-06 61.7 8.9 37 3-41 197-233 (758)
296 3nwj_A ATSK2; P loop, shikimat 93.6 0.028 9.6E-07 57.3 2.7 25 16-40 49-73 (250)
297 4b4t_J 26S protease regulatory 93.6 0.11 3.9E-06 56.3 7.5 30 14-43 181-210 (405)
298 3pfi_A Holliday junction ATP-d 93.6 0.026 9E-07 60.4 2.6 29 14-42 54-82 (338)
299 1znw_A Guanylate kinase, GMP k 93.6 0.03 1E-06 55.3 2.8 25 16-40 21-45 (207)
300 2pbr_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 53.2 3.8 24 17-40 2-25 (195)
301 4e22_A Cytidylate kinase; P-lo 93.5 0.038 1.3E-06 56.5 3.4 25 16-40 28-52 (252)
302 2cdn_A Adenylate kinase; phosp 93.5 0.043 1.5E-06 53.8 3.8 25 16-40 21-45 (201)
303 2grj_A Dephospho-COA kinase; T 93.5 0.046 1.6E-06 53.3 3.9 24 15-38 12-35 (192)
304 1rj9_A FTSY, signal recognitio 93.5 0.062 2.1E-06 56.5 5.1 35 15-50 102-136 (304)
305 1tue_A Replication protein E1; 93.4 0.046 1.6E-06 53.4 3.7 38 3-41 47-84 (212)
306 2vli_A Antibiotic resistance p 93.4 0.028 9.4E-07 54.1 2.2 25 16-40 6-30 (183)
307 1htw_A HI0065; nucleotide-bind 93.4 0.072 2.5E-06 50.1 5.0 27 13-39 31-57 (158)
308 2og2_A Putative signal recogni 93.4 0.093 3.2E-06 56.4 6.4 35 15-50 157-191 (359)
309 1ixz_A ATP-dependent metallopr 93.4 0.037 1.3E-06 56.5 3.2 23 18-40 52-74 (254)
310 1nn5_A Similar to deoxythymidy 93.4 0.062 2.1E-06 53.0 4.8 27 16-42 10-36 (215)
311 2b8t_A Thymidine kinase; deoxy 93.4 0.18 6E-06 50.3 7.9 34 16-49 13-46 (223)
312 1z6g_A Guanylate kinase; struc 93.4 0.032 1.1E-06 55.7 2.5 24 16-39 24-47 (218)
313 1vma_A Cell division protein F 93.3 0.1 3.4E-06 54.9 6.4 35 14-49 103-137 (306)
314 2yhs_A FTSY, cell division pro 93.3 0.074 2.5E-06 59.2 5.6 35 15-50 293-327 (503)
315 3e70_C DPA, signal recognition 93.3 0.093 3.2E-06 55.7 6.2 35 14-49 128-162 (328)
316 2f1r_A Molybdopterin-guanine d 93.3 0.032 1.1E-06 53.3 2.3 26 16-41 3-28 (171)
317 3lda_A DNA repair protein RAD5 93.3 0.15 5E-06 55.7 7.9 48 3-50 166-219 (400)
318 3p32_A Probable GTPase RV1496/ 93.3 0.12 4.1E-06 55.7 7.1 31 11-41 75-105 (355)
319 3b9q_A Chloroplast SRP recepto 93.3 0.069 2.3E-06 56.1 5.0 35 15-50 100-134 (302)
320 3l0o_A Transcription terminati 93.2 0.17 6E-06 54.1 8.0 26 16-41 176-201 (427)
321 2eyu_A Twitching motility prot 93.2 0.074 2.5E-06 54.6 5.0 36 15-50 25-60 (261)
322 2f6r_A COA synthase, bifunctio 93.1 0.048 1.6E-06 56.7 3.6 24 14-37 74-97 (281)
323 2i1q_A DNA repair and recombin 93.1 0.15 5E-06 54.1 7.5 35 4-38 87-121 (322)
324 1gtv_A TMK, thymidylate kinase 93.1 0.03 1E-06 55.3 2.0 25 17-41 2-26 (214)
325 2wwf_A Thymidilate kinase, put 93.1 0.053 1.8E-06 53.5 3.8 28 15-42 10-37 (212)
326 1m7g_A Adenylylsulfate kinase; 93.1 0.059 2E-06 53.3 4.1 26 15-40 25-50 (211)
327 2jeo_A Uridine-cytidine kinase 93.1 0.054 1.9E-06 55.0 3.9 27 13-39 23-49 (245)
328 3jvv_A Twitching mobility prot 93.1 0.16 5.4E-06 54.6 7.7 89 16-114 124-213 (356)
329 2i3b_A HCR-ntpase, human cance 93.1 0.049 1.7E-06 53.0 3.3 24 17-40 3-26 (189)
330 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.066 2.3E-06 53.5 4.4 35 16-50 24-58 (235)
331 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.053 1.8E-06 55.7 3.7 26 15-40 4-29 (260)
332 2pez_A Bifunctional 3'-phospho 93.0 0.065 2.2E-06 51.3 4.1 26 15-40 5-30 (179)
333 1s96_A Guanylate kinase, GMP k 93.0 0.047 1.6E-06 54.5 3.1 25 16-40 17-41 (219)
334 1fx0_B ATP synthase beta chain 92.9 0.22 7.7E-06 55.1 8.6 93 16-111 166-280 (498)
335 2z0h_A DTMP kinase, thymidylat 92.9 0.06 2E-06 52.3 3.8 25 17-41 2-26 (197)
336 1np6_A Molybdopterin-guanine d 92.9 0.085 2.9E-06 50.4 4.7 29 14-42 5-33 (174)
337 3ake_A Cytidylate kinase; CMP 92.8 0.063 2.2E-06 52.7 3.8 24 17-40 4-27 (208)
338 2gno_A DNA polymerase III, gam 92.8 0.38 1.3E-05 50.5 10.0 34 3-38 8-41 (305)
339 1vht_A Dephospho-COA kinase; s 92.8 0.054 1.9E-06 53.8 3.3 22 16-37 5-26 (218)
340 1iy2_A ATP-dependent metallopr 92.8 0.051 1.7E-06 56.4 3.2 23 18-40 76-98 (278)
341 2dr3_A UPF0273 protein PH0284; 92.8 0.077 2.6E-06 53.6 4.5 47 4-50 12-58 (247)
342 3tqc_A Pantothenate kinase; bi 92.8 0.07 2.4E-06 56.4 4.2 29 12-40 89-117 (321)
343 3d3q_A TRNA delta(2)-isopenten 92.8 0.06 2.1E-06 57.1 3.7 25 16-40 8-32 (340)
344 4b4t_H 26S protease regulatory 92.8 0.14 4.9E-06 56.3 6.8 31 13-43 241-271 (467)
345 3tlx_A Adenylate kinase 2; str 92.7 0.069 2.4E-06 54.2 4.0 27 13-39 27-53 (243)
346 2hf9_A Probable hydrogenase ni 92.7 0.15 5.3E-06 50.6 6.6 30 13-42 36-65 (226)
347 1aky_A Adenylate kinase; ATP:A 92.7 0.056 1.9E-06 53.8 3.2 25 16-40 5-29 (220)
348 2ehv_A Hypothetical protein PH 92.7 0.059 2E-06 54.6 3.4 35 16-50 31-66 (251)
349 1j8m_F SRP54, signal recogniti 92.6 0.11 3.8E-06 54.3 5.5 28 15-42 98-125 (297)
350 2ck3_D ATP synthase subunit be 92.6 0.23 7.9E-06 54.8 8.1 93 16-111 154-267 (482)
351 3fb4_A Adenylate kinase; psych 92.5 0.072 2.5E-06 52.7 3.8 23 17-39 2-24 (216)
352 1sq5_A Pantothenate kinase; P- 92.5 0.067 2.3E-06 56.4 3.6 37 13-49 78-115 (308)
353 3lnc_A Guanylate kinase, GMP k 92.4 0.039 1.3E-06 55.5 1.6 24 16-39 28-52 (231)
354 1pgv_A TMD-1, tropomodulin TMD 92.4 0.056 1.9E-06 52.6 2.7 14 348-361 38-51 (197)
355 1zd8_A GTP:AMP phosphotransfer 92.4 0.071 2.4E-06 53.4 3.5 24 16-39 8-31 (227)
356 3co5_A Putative two-component 92.4 0.02 6.9E-07 52.9 -0.6 22 18-39 30-51 (143)
357 2onk_A Molybdate/tungstate ABC 92.3 0.061 2.1E-06 54.5 2.9 35 13-49 23-57 (240)
358 2r62_A Cell division protease 92.3 0.04 1.4E-06 56.7 1.6 27 17-43 46-72 (268)
359 3tif_A Uncharacterized ABC tra 92.3 0.066 2.3E-06 54.0 3.1 34 16-50 32-65 (235)
360 3pxg_A Negative regulator of g 92.2 0.18 6.1E-06 56.6 6.9 38 3-42 191-228 (468)
361 2xxa_A Signal recognition part 92.2 0.17 5.9E-06 55.9 6.7 29 14-42 99-127 (433)
362 3bgw_A DNAB-like replicative h 92.2 0.52 1.8E-05 52.2 10.6 37 14-50 196-232 (444)
363 3zvl_A Bifunctional polynucleo 92.2 0.39 1.3E-05 52.9 9.5 26 14-39 257-282 (416)
364 1gvn_B Zeta; postsegregational 92.2 0.11 3.9E-06 54.0 4.9 26 14-39 32-57 (287)
365 2pcj_A ABC transporter, lipopr 92.2 0.066 2.3E-06 53.6 3.0 34 16-50 31-64 (224)
366 3r20_A Cytidylate kinase; stru 92.2 0.081 2.8E-06 53.1 3.6 25 16-40 10-34 (233)
367 3vr4_D V-type sodium ATPase su 92.2 0.14 4.7E-06 56.2 5.6 91 17-110 153-261 (465)
368 3dl0_A Adenylate kinase; phosp 92.1 0.083 2.8E-06 52.3 3.6 23 17-39 2-24 (216)
369 1zak_A Adenylate kinase; ATP:A 92.1 0.064 2.2E-06 53.5 2.8 25 16-40 6-30 (222)
370 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.17 5.7E-06 53.9 6.1 79 16-109 172-252 (330)
371 1q3t_A Cytidylate kinase; nucl 92.1 0.086 2.9E-06 53.1 3.7 27 13-39 14-40 (236)
372 2v54_A DTMP kinase, thymidylat 92.1 0.081 2.8E-06 51.7 3.4 24 16-39 5-28 (204)
373 2wsm_A Hydrogenase expression/ 92.0 0.15 5.1E-06 50.5 5.4 30 13-42 28-57 (221)
374 2cbz_A Multidrug resistance-as 91.9 0.077 2.6E-06 53.6 3.1 23 16-38 32-54 (237)
375 1ls1_A Signal recognition part 91.9 0.15 5E-06 53.4 5.3 35 15-50 98-132 (295)
376 3gfo_A Cobalt import ATP-bindi 91.9 0.077 2.6E-06 54.9 3.1 34 16-50 35-68 (275)
377 3b85_A Phosphate starvation-in 91.8 0.063 2.2E-06 53.0 2.2 23 16-38 23-45 (208)
378 2j37_W Signal recognition part 91.8 0.21 7.2E-06 56.1 6.7 41 2-42 81-128 (504)
379 1mv5_A LMRA, multidrug resista 91.7 0.088 3E-06 53.4 3.3 34 16-50 29-62 (243)
380 2p67_A LAO/AO transport system 91.7 0.21 7.1E-06 53.4 6.5 31 10-40 51-81 (341)
381 1b0u_A Histidine permease; ABC 91.7 0.081 2.8E-06 54.3 3.1 34 16-50 33-66 (262)
382 1svm_A Large T antigen; AAA+ f 91.7 0.12 4E-06 56.0 4.5 30 11-40 165-194 (377)
383 2v3c_C SRP54, signal recogniti 91.7 0.086 2.9E-06 58.2 3.5 28 15-42 99-126 (432)
384 2d2e_A SUFC protein; ABC-ATPas 91.7 0.088 3E-06 53.6 3.3 35 16-50 30-65 (250)
385 4g1u_C Hemin import ATP-bindin 91.7 0.083 2.8E-06 54.4 3.1 34 16-50 38-71 (266)
386 3io5_A Recombination and repai 91.6 0.5 1.7E-05 49.3 8.8 48 2-50 12-65 (333)
387 1ji0_A ABC transporter; ATP bi 91.6 0.087 3E-06 53.3 3.1 33 16-49 33-65 (240)
388 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.6E-06 52.0 3.7 23 17-39 2-24 (223)
389 2qm8_A GTPase/ATPase; G protei 91.6 0.24 8.1E-06 52.9 6.6 34 8-41 48-81 (337)
390 1oix_A RAS-related protein RAB 91.5 0.12 4E-06 50.1 3.9 24 15-38 29-52 (191)
391 1g6h_A High-affinity branched- 91.5 0.088 3E-06 53.9 3.1 34 16-50 34-67 (257)
392 3be4_A Adenylate kinase; malar 91.5 0.11 3.7E-06 51.7 3.7 24 16-39 6-29 (217)
393 2olj_A Amino acid ABC transpor 91.5 0.088 3E-06 54.0 3.1 34 16-50 51-84 (263)
394 2p5t_B PEZT; postsegregational 91.5 0.08 2.7E-06 54.0 2.8 27 14-40 31-57 (253)
395 2zu0_C Probable ATP-dependent 91.5 0.094 3.2E-06 54.0 3.3 35 16-50 47-82 (267)
396 1e4v_A Adenylate kinase; trans 91.5 0.11 3.8E-06 51.4 3.7 23 17-39 2-24 (214)
397 2pze_A Cystic fibrosis transme 91.5 0.091 3.1E-06 52.7 3.1 24 16-39 35-58 (229)
398 1sgw_A Putative ABC transporte 91.4 0.078 2.7E-06 52.6 2.5 33 16-49 36-68 (214)
399 2ff7_A Alpha-hemolysin translo 91.4 0.094 3.2E-06 53.3 3.1 34 16-50 36-69 (247)
400 2zr9_A Protein RECA, recombina 91.4 0.14 4.7E-06 55.0 4.6 48 3-50 48-96 (349)
401 1ak2_A Adenylate kinase isoenz 91.4 0.11 3.7E-06 52.2 3.6 25 16-40 17-41 (233)
402 3crm_A TRNA delta(2)-isopenten 91.4 0.092 3.1E-06 55.3 3.1 24 16-39 6-29 (323)
403 2bjv_A PSP operon transcriptio 91.3 0.073 2.5E-06 54.7 2.2 25 16-40 30-54 (265)
404 2ghi_A Transport protein; mult 91.3 0.097 3.3E-06 53.7 3.1 33 16-50 47-79 (260)
405 1vpl_A ABC transporter, ATP-bi 91.3 0.097 3.3E-06 53.5 3.1 33 16-49 42-74 (256)
406 3umf_A Adenylate kinase; rossm 91.2 0.16 5.5E-06 50.4 4.5 27 13-39 27-53 (217)
407 1cr0_A DNA primase/helicase; R 91.2 0.17 5.8E-06 52.9 5.0 35 16-50 36-71 (296)
408 1a7j_A Phosphoribulokinase; tr 91.2 0.061 2.1E-06 56.2 1.5 27 14-40 4-30 (290)
409 1ofh_A ATP-dependent HSL prote 91.1 0.11 3.8E-06 54.4 3.5 26 16-41 51-76 (310)
410 2qi9_C Vitamin B12 import ATP- 91.1 0.1 3.5E-06 53.0 3.1 33 16-50 27-59 (249)
411 1sxj_C Activator 1 40 kDa subu 91.1 0.16 5.3E-06 54.4 4.6 24 18-41 49-72 (340)
412 2ixe_A Antigen peptide transpo 91.0 0.11 3.6E-06 53.8 3.1 34 16-50 46-79 (271)
413 1yrb_A ATP(GTP)binding protein 91.0 0.22 7.6E-06 50.8 5.6 27 14-40 13-39 (262)
414 2yz2_A Putative ABC transporte 91.0 0.11 3.6E-06 53.6 3.1 33 16-49 34-66 (266)
415 2nq2_C Hypothetical ABC transp 90.9 0.11 3.8E-06 53.0 3.1 23 16-38 32-54 (253)
416 2ihy_A ABC transporter, ATP-bi 90.9 0.11 3.7E-06 53.9 3.1 33 16-49 48-80 (279)
417 2wji_A Ferrous iron transport 90.9 0.13 4.4E-06 48.4 3.3 22 16-37 4-25 (165)
418 1cp2_A CP2, nitrogenase iron p 90.9 0.22 7.7E-06 51.0 5.5 27 16-42 2-28 (269)
419 2dyk_A GTP-binding protein; GT 90.9 0.14 4.9E-06 47.4 3.6 22 16-37 2-23 (161)
420 3sop_A Neuronal-specific septi 90.8 0.12 4.2E-06 53.2 3.4 23 17-39 4-26 (270)
421 1pgv_A TMD-1, tropomodulin TMD 90.8 0.14 4.8E-06 49.8 3.5 84 396-479 39-136 (197)
422 2f9l_A RAB11B, member RAS onco 90.8 0.13 4.6E-06 50.0 3.5 23 15-37 5-27 (199)
423 3end_A Light-independent proto 90.7 0.23 7.8E-06 52.2 5.4 30 13-42 39-68 (307)
424 3nh6_A ATP-binding cassette SU 90.6 0.11 3.8E-06 54.5 2.8 22 16-37 81-102 (306)
425 1ltq_A Polynucleotide kinase; 90.6 0.14 4.8E-06 53.6 3.7 23 16-38 3-25 (301)
426 1nlf_A Regulatory protein REPA 90.6 0.23 7.9E-06 51.3 5.3 26 16-41 31-56 (279)
427 3kta_A Chromosome segregation 90.6 0.13 4.5E-06 49.2 3.2 23 17-39 28-50 (182)
428 2q6t_A DNAB replication FORK h 90.5 1.2 4.2E-05 49.3 11.4 52 14-71 199-251 (444)
429 2vp4_A Deoxynucleoside kinase; 90.5 0.1 3.4E-06 52.4 2.3 25 14-38 19-43 (230)
430 2ck3_A ATP synthase subunit al 90.4 0.45 1.6E-05 52.8 7.6 93 16-111 163-276 (510)
431 1f6b_A SAR1; gtpases, N-termin 90.4 0.2 6.8E-06 48.7 4.4 31 6-37 17-47 (198)
432 3a8t_A Adenylate isopentenyltr 90.4 0.095 3.2E-06 55.4 2.1 24 16-39 41-64 (339)
433 2zej_A Dardarin, leucine-rich 90.3 0.13 4.5E-06 49.3 2.8 21 17-37 4-24 (184)
434 1tq4_A IIGP1, interferon-induc 90.3 0.11 3.8E-06 56.8 2.6 34 4-37 58-91 (413)
435 4eaq_A DTMP kinase, thymidylat 90.3 0.18 6.3E-06 50.5 4.0 27 15-41 26-52 (229)
436 3hws_A ATP-dependent CLP prote 90.2 0.13 4.6E-06 55.5 3.2 25 16-40 52-76 (363)
437 2v9p_A Replication protein E1; 90.2 0.19 6.5E-06 52.6 4.2 25 15-39 126-150 (305)
438 1um8_A ATP-dependent CLP prote 90.2 0.13 4.6E-06 55.7 3.2 26 16-41 73-98 (376)
439 3exa_A TRNA delta(2)-isopenten 90.2 0.17 5.7E-06 52.9 3.6 24 16-39 4-27 (322)
440 1z2a_A RAS-related protein RAB 90.1 0.2 6.9E-06 46.7 4.0 24 14-37 4-27 (168)
441 3pxi_A Negative regulator of g 90.1 0.41 1.4E-05 57.2 7.6 37 3-41 191-227 (758)
442 1pzn_A RAD51, DNA repair and r 90.1 0.17 5.9E-06 54.2 3.9 48 3-50 119-172 (349)
443 3m6a_A ATP-dependent protease 90.1 0.15 5.2E-06 58.2 3.6 29 15-43 108-136 (543)
444 3cf2_A TER ATPase, transitiona 90.0 0.21 7.3E-06 59.2 4.9 29 14-42 237-265 (806)
445 3hjn_A DTMP kinase, thymidylat 90.0 1 3.4E-05 43.8 9.0 33 17-49 2-34 (197)
446 2pjz_A Hypothetical protein ST 90.0 0.15 5.1E-06 52.3 3.1 33 16-50 31-63 (263)
447 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.5E-06 47.1 3.1 21 17-37 5-25 (166)
448 2afh_E Nitrogenase iron protei 89.9 0.28 9.7E-06 50.9 5.3 28 15-42 2-29 (289)
449 2ewv_A Twitching motility prot 89.8 0.24 8.3E-06 53.6 4.8 88 15-112 136-224 (372)
450 3con_A GTPase NRAS; structural 89.8 0.17 5.8E-06 48.6 3.2 22 16-37 22-43 (190)
451 3t1o_A Gliding protein MGLA; G 89.6 0.18 6E-06 48.6 3.2 25 15-39 14-38 (198)
452 2wjg_A FEOB, ferrous iron tran 89.6 0.19 6.3E-06 48.2 3.3 23 15-37 7-29 (188)
453 1ojl_A Transcriptional regulat 89.6 0.12 4.1E-06 54.4 2.1 23 17-39 27-49 (304)
454 4b4t_K 26S protease regulatory 89.6 0.17 5.9E-06 55.5 3.4 31 13-43 204-234 (428)
455 3foz_A TRNA delta(2)-isopenten 89.6 0.21 7.2E-06 52.0 3.8 25 15-39 10-34 (316)
456 2ocp_A DGK, deoxyguanosine kin 89.5 0.21 7.1E-06 50.4 3.7 25 16-40 3-27 (241)
457 2bbs_A Cystic fibrosis transme 89.5 0.16 5.6E-06 52.8 3.0 23 16-38 65-87 (290)
458 3pxi_A Negative regulator of g 89.4 0.32 1.1E-05 58.1 5.9 27 16-42 522-548 (758)
459 2ffh_A Protein (FFH); SRP54, s 89.4 0.34 1.2E-05 53.2 5.6 34 15-49 98-131 (425)
460 4edh_A DTMP kinase, thymidylat 89.4 0.56 1.9E-05 46.3 6.7 27 16-42 7-33 (213)
461 3cr8_A Sulfate adenylyltranfer 89.3 0.19 6.7E-06 57.2 3.7 26 16-41 370-395 (552)
462 4b4t_M 26S protease regulatory 89.3 0.18 6.3E-06 55.4 3.4 30 13-42 213-242 (434)
463 1fzq_A ADP-ribosylation factor 89.3 0.23 7.7E-06 47.5 3.7 25 13-37 14-38 (181)
464 3tui_C Methionine import ATP-b 89.3 0.18 6E-06 54.2 3.1 33 16-49 55-87 (366)
465 3hu3_A Transitional endoplasmi 89.3 0.14 4.8E-06 57.6 2.4 26 15-40 238-263 (489)
466 3eph_A TRNA isopentenyltransfe 89.2 0.23 7.8E-06 53.8 3.9 25 16-40 3-27 (409)
467 4dzz_A Plasmid partitioning pr 89.2 0.32 1.1E-05 47.4 4.7 35 16-50 2-37 (206)
468 1c1y_A RAS-related protein RAP 89.2 0.2 7E-06 46.6 3.2 21 17-37 5-25 (167)
469 2r9v_A ATP synthase subunit al 89.2 0.3 1E-05 54.2 4.9 91 16-111 176-281 (515)
470 2h92_A Cytidylate kinase; ross 89.1 0.17 5.9E-06 50.1 2.7 24 16-39 4-27 (219)
471 4b4t_L 26S protease subunit RP 89.1 0.2 6.7E-06 55.2 3.4 31 13-43 213-243 (437)
472 1nij_A Hypothetical protein YJ 89.0 0.18 6.2E-06 53.3 3.0 25 14-38 3-27 (318)
473 3fdi_A Uncharacterized protein 89.0 0.22 7.5E-06 48.8 3.4 25 16-40 7-31 (201)
474 2yv5_A YJEQ protein; hydrolase 89.0 0.21 7.3E-06 52.3 3.5 21 16-36 166-186 (302)
475 1lw7_A Transcriptional regulat 89.0 0.22 7.6E-06 53.8 3.7 26 15-40 170-195 (365)
476 2r44_A Uncharacterized protein 89.0 0.18 6.2E-06 53.6 2.9 26 17-42 48-73 (331)
477 2qe7_A ATP synthase subunit al 88.9 0.36 1.2E-05 53.5 5.2 91 16-111 163-268 (502)
478 2gj8_A MNME, tRNA modification 88.8 0.2 6.7E-06 47.5 2.8 22 16-37 5-26 (172)
479 3cmu_A Protein RECA, recombina 88.8 0.47 1.6E-05 61.5 7.0 48 3-50 1414-1462(2050)
480 2ged_A SR-beta, signal recogni 88.8 0.24 8.1E-06 47.7 3.4 24 14-37 47-70 (193)
481 4a1f_A DNAB helicase, replicat 88.7 1.3 4.4E-05 47.0 9.3 49 16-70 47-95 (338)
482 1m7b_A RND3/RHOE small GTP-bin 88.7 0.22 7.6E-06 47.6 3.1 23 15-37 7-29 (184)
483 1ypw_A Transitional endoplasmi 88.7 0.18 6.3E-06 60.5 3.0 28 15-42 238-265 (806)
484 3q72_A GTP-binding protein RAD 88.7 0.2 6.9E-06 46.7 2.8 21 17-37 4-24 (166)
485 2c61_A A-type ATP synthase non 88.6 0.36 1.2E-05 53.2 5.1 93 16-111 153-263 (469)
486 1z08_A RAS-related protein RAB 88.6 0.23 8E-06 46.4 3.2 23 15-37 6-28 (170)
487 3sr0_A Adenylate kinase; phosp 88.5 0.28 9.6E-06 48.2 3.8 23 17-39 2-24 (206)
488 1u8z_A RAS-related protein RAL 88.5 0.35 1.2E-05 44.9 4.3 22 16-37 5-26 (168)
489 3q85_A GTP-binding protein REM 88.5 0.28 9.7E-06 45.8 3.7 22 15-36 2-23 (169)
490 2r8r_A Sensor protein; KDPD, P 88.5 0.44 1.5E-05 47.2 5.1 26 17-42 8-33 (228)
491 4hlc_A DTMP kinase, thymidylat 88.5 0.42 1.4E-05 46.9 5.0 29 16-44 3-31 (205)
492 2nzj_A GTP-binding protein REM 88.4 0.3 1E-05 45.9 3.8 23 15-37 4-26 (175)
493 2www_A Methylmalonic aciduria 88.4 0.44 1.5E-05 51.0 5.5 29 13-41 72-100 (349)
494 2qnr_A Septin-2, protein NEDD5 88.4 0.19 6.5E-06 52.7 2.5 21 17-37 20-40 (301)
495 1z0j_A RAB-22, RAS-related pro 88.4 0.25 8.5E-06 46.1 3.2 22 16-37 7-28 (170)
496 1kao_A RAP2A; GTP-binding prot 88.4 0.25 8.6E-06 45.8 3.2 21 17-37 5-25 (167)
497 1ek0_A Protein (GTP-binding pr 88.3 0.25 8.6E-06 46.0 3.2 21 17-37 5-25 (170)
498 3gmt_A Adenylate kinase; ssgci 88.3 0.27 9.3E-06 49.0 3.5 23 17-39 10-32 (230)
499 3gqb_B V-type ATP synthase bet 88.3 0.47 1.6E-05 52.0 5.6 25 16-40 148-172 (464)
500 3ld9_A DTMP kinase, thymidylat 88.3 0.59 2E-05 46.4 5.9 27 15-41 21-47 (223)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.6e-31 Score=319.59 Aligned_cols=319 Identities=21% Similarity=0.213 Sum_probs=191.9
Q ss_pred cEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc-cCCCcceEEecCCCCC-CCCCCC-C-CCCcEEEEccC
Q 003104 262 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFN-SLPVSF-R-PEKLFKLNLCN 337 (847)
Q Consensus 262 ~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~-~~~~L~~L~~~~~~~~-~lp~~~-~-~~~L~~L~L~~ 337 (847)
.++.+.+..+......+.+|.++++|+.|++++|.+.+.++. ...+|++|++.+|.+. .+|..+ . +++|++|++++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 344444444433333344445555555555555544432221 2335555555555554 455544 2 35666666666
Q ss_pred CCcc-ccccccccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCccccccccccccCCC-CCcEEeccCCCCccc
Q 003104 338 SRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLVS 413 (847)
Q Consensus 338 ~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~-~L~~L~L~~c~~l~~ 413 (847)
|.+. .+|..+..+++|++|+|++|.....+|. +.++++|++|++++|...+.+|..+..++ +|++|++++|...+.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 6665 4455566666666666666655544442 56666666666666655556666666665 666666666665555
Q ss_pred cCccccC--CCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-ccCccccCCCCCCEEEeCCCCCCCCCcCcch
Q 003104 414 FPKNVCL--MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQPPKILSSN 490 (847)
Q Consensus 414 lp~~i~~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~ 490 (847)
+|..++. +++|++|++++|...+.+|..++.+++|+.|++++|.++ .+|..++.+++|+.|++++|......+....
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 5555544 566777777777666667777777777777777777776 6666777777777777777765544455555
Q ss_pred hhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCE
Q 003104 491 FFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKI 568 (847)
Q Consensus 491 ~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~ 568 (847)
.+..+.......+.+...+|. +..+++|+.|+|++|.+. +.+|.+++.+++|++|+|++|+++ .+|..++.+++|+.
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 555553332223333334444 667777777777777754 467777777777777777777776 67777777777777
Q ss_pred EeecCCCCCccCC
Q 003104 569 LCLEKCRNLKSLP 581 (847)
Q Consensus 569 L~L~~c~~L~~lp 581 (847)
|++++|+....+|
T Consensus 543 L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 543 LDLNTNLFNGTIP 555 (768)
T ss_dssp EECCSSEEESBCC
T ss_pred EECCCCccCCcCC
Confidence 7777776655555
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-30 Score=317.27 Aligned_cols=336 Identities=20% Similarity=0.164 Sum_probs=284.0
Q ss_pred CCCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCCCCCCCcEEEEc
Q 003104 259 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNL 335 (847)
Q Consensus 259 ~~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L 335 (847)
....++.+.+..+......+. |.++++|++|++++|.+.+.++. ...+|++|++.+|.+........+++|++|++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L 276 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEEC
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEEC
Confidence 456788899988866554444 99999999999999999986654 34689999999999864444448899999999
Q ss_pred cCCCcc-ccccccccC-cCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccccccccc-ccCCCCCcEEeccCCCCc
Q 003104 336 CNSRIK-YLWKGIKPL-KELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRLILLNLKDCRNL 411 (847)
Q Consensus 336 ~~~~l~-~l~~~~~~l-~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~L~~c~~l 411 (847)
++|.+. .+|..+..+ ++|++|+|++|.+....|. ++++++|++|++++|...+.+|.. ++.+++|++|++++|...
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 999998 888887775 9999999999988877775 899999999999999888788876 999999999999999888
Q ss_pred cccCccccCCC-CccEEEecCccCCCcCCccccC--CCcccEEEecCcccc-ccCccccCCCCCCEEEeCCCCCCCCCcC
Q 003104 412 VSFPKNVCLMK-SLKILCLCGCLKLEKLPQDLGE--VECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQPPKIL 487 (847)
Q Consensus 412 ~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~--l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~ 487 (847)
+.+|..+..++ +|++|++++|...+.+|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|......+.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 89999888887 9999999999998888888877 889999999999999 7899999999999999999986555566
Q ss_pred cchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhcCCC
Q 003104 488 SSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLK 565 (847)
Q Consensus 488 ~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~ 565 (847)
.+..+..+.......+.....+|. +..+++|++|+|++|.+. +.+|..++.+++|++|+|++|+++ .+|.+++.+++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 666666664333333344445665 889999999999999965 588999999999999999999999 89999999999
Q ss_pred CCEEeecCCCCCccCCCCC---CCcceeeccCCc
Q 003104 566 LKILCLEKCRNLKSLPELP---PEIVFVGAEDCT 596 (847)
Q Consensus 566 L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~c~ 596 (847)
|+.|+|++|+..+.+|... ++|+.|++++|+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 9999999998777787532 678888877653
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.8e-30 Score=302.68 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=172.4
Q ss_pred hHHHHhHhcC-CCCeEEEEEEcCCCchHHHHHHHHHH----HHhccCCceeEEEeccccccc--CChHHHHHHHHHHHhc
Q 003104 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVT--RGLVPLQEQLLSEVLM 74 (847)
Q Consensus 2 ~~i~~lL~~~-~~~v~vigI~GmgGiGKTTLA~~vy~----~i~~~F~~~~~v~~~~~~s~~--~~l~~l~~~il~~~l~ 74 (847)
++|.++|..+ ..++++|+|||||||||||||+++|+ +++.+|++++||+ ++.. ++...++++++.++..
T Consensus 138 ~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~ 213 (549)
T 2a5y_B 138 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKS 213 (549)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhc
Confidence 5677787654 45789999999999999999999997 7899999999997 4444 4788999999999754
Q ss_pred CCC-cccc-----chhhhHHHHHHHhcCC-cEEEEEcCCCCHHHH--HHHhcC-----------------CCe-e-----
Q 003104 75 ERD-LIIW-----DVHKGINLIRWRLCRK-RVLVILDDVDQLEQL--QALVGN-----------------HDW-F----- 122 (847)
Q Consensus 75 ~~~-~~~~-----~~~~~~~~i~~~L~~k-k~LlVLDDV~~~~~l--~~L~~~-----------------~~w-~----- 122 (847)
..+ .... +....+..++++|++| |+||||||||+.+++ ....|. ... +
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L 293 (549)
T 2a5y_B 214 EDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSL 293 (549)
T ss_dssp TSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCC
T ss_pred CcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCC
Confidence 322 1122 2344588999999996 999999999999875 222111 000 0
Q ss_pred -----------------------------------------EecccccCCCHHHHHHHHH-HHhcCCccccceeeeeecc
Q 003104 123 -----------------------------------------VLGSFLCGRSVEEWKSALN-RLQEAPNEKVLKVLRISYD 160 (847)
Q Consensus 123 -----------------------------------------~lgs~L~~~~~~~W~~~l~-~L~~~~~~~i~~~L~~SYd 160 (847)
++|+.|+.++. +|...+. .++..+..+|..++++||+
T Consensus 294 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~ 372 (549)
T 2a5y_B 294 EIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYK 372 (549)
T ss_dssp CHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSS
T ss_pred CHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccc
Confidence 67888877643 3333333 3333356789999999999
Q ss_pred CCChhhHHHhh-----------eeeeccCCCCHHHHHHHHhhC--CCChhh-----------hHHHHhhcCceeEeC---
Q 003104 161 GLDRRDKEIFL-----------DIACFFKGKDEDRVRKKLDSC--GFNSDI-----------GIRELLDKSLITIVN--- 213 (847)
Q Consensus 161 ~L~~~~k~~FL-----------~~a~F~~~~~~~~l~~~~~~~--g~~~~~-----------~l~~L~~k~Li~~~~--- 213 (847)
+||.++|.||+ |||+||+++.++ +++|+++ ||+... ++++|+++||++...
T Consensus 373 ~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~ 450 (549)
T 2a5y_B 373 SLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMP 450 (549)
T ss_dssp SHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSS
T ss_pred cccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCC
Confidence 99999999999 999999999888 7899999 887532 599999999999862
Q ss_pred -CeEeehHHHHHHHHHHhhhcC
Q 003104 214 -NKLWMHDLLQEMGWEIVREHH 234 (847)
Q Consensus 214 -~~~~mHdll~~~~~~i~~~e~ 234 (847)
.+++|||++|++|++++.+++
T Consensus 451 ~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 451 VLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCEEECCHHHHHHHHTTSCTHH
T ss_pred ceEEEeChHHHHHHHHHHHHHH
Confidence 369999999999999998765
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2e-29 Score=299.71 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=163.6
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccC------C---------------------------CccccCC-
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSS------G---------------------------NLEYLSN- 306 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~------~---------------------------~~~~~~~- 306 (847)
.+|+++.+..+......+.++.++++|++|++++|.+. + .++....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999988666555689999999999999998651 1 0000000
Q ss_pred ---------------------CcceEE--ecCCCCCCCCCCC-CCCCcEEEEccCCCccc------------------cc
Q 003104 307 ---------------------NLRYLK--WHEYPFNSLPVSF-RPEKLFKLNLCNSRIKY------------------LW 344 (847)
Q Consensus 307 ---------------------~L~~L~--~~~~~~~~lp~~~-~~~~L~~L~L~~~~l~~------------------l~ 344 (847)
.++.+. ..++.+..+|..+ .+++|++|+|++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 000010 0123444577766 78888888888888887 88
Q ss_pred cccc--cCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc-ccc-cccccccCC------CCCcEEeccCCCCccc
Q 003104 345 KGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTL------KRLILLNLKDCRNLVS 413 (847)
Q Consensus 345 ~~~~--~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~-~l~-~lp~~i~~L------~~L~~L~L~~c~~l~~ 413 (847)
+.+. ++++|++|+|++|.....+|. ++++++|++|++++|. ..+ .+|..++.+ ++|++|++++|... .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 8877 888888888888887777774 7888888888888887 555 678777776 88888888887655 7
Q ss_pred cCc--cccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCC-CCEEEeCCCCCC
Q 003104 414 FPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCKGQ 482 (847)
Q Consensus 414 lp~--~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~~ 482 (847)
+|. .++.+++|++|++++|...+.+| .++.+++|++|++++|.++.+|..+..+++ |++|++++|...
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 887 78888888888888887776777 777888888888888888888888888887 888888887744
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=7.6e-28 Score=285.27 Aligned_cols=333 Identities=18% Similarity=0.183 Sum_probs=251.4
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCC-CCCC-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.+..+ |..+ .+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4678899999888888889999999999999999988764432 356899999999999877 4456 8999999999
Q ss_pred cCCCcccc-ccccccCcCCCEEEcCCCCCCC-CCCCCCCCCcCcEeeccCccccccccccccCCCCCc--EEeccCCCCc
Q 003104 336 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLI-RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI--LLNLKDCRNL 411 (847)
Q Consensus 336 ~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~-~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~--~L~L~~c~~l 411 (847)
++|.++.+ +..+.++++|++|++++|.+.. ..|.+.++++|++|++++|......|..++.+++|+ .|++++|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988 5679999999999999998776 447777799999999999987777778899999999 8999998765
Q ss_pred cccCccccCCC----------------------------------------------------CccEEEecCccCCCcCC
Q 003104 412 VSFPKNVCLMK----------------------------------------------------SLKILCLCGCLKLEKLP 439 (847)
Q Consensus 412 ~~lp~~i~~l~----------------------------------------------------~L~~L~Ls~c~~l~~lp 439 (847)
+..|..+. .. +|+.|++++|...+..+
T Consensus 193 ~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred ccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 55444331 12 56777777776666666
Q ss_pred ccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC--CCCCCC
Q 003104 440 QDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR--FTGLSS 517 (847)
Q Consensus 440 ~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~ 517 (847)
..++.+++|++|++++|.++++|..+..+++|++|++++|......+.....++.+.......+.....++. +..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 668888999999999999999998899999999999998876544444444555553222222222223333 778888
Q ss_pred CCEEeccCCCCCCCCC--CcccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEEeecCCCCCccCCCC----CCCccee
Q 003104 518 LQTLDLSDCNLLEGAI--PSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPEL----PPEIVFV 590 (847)
Q Consensus 518 L~~L~Ls~~~l~~~~l--p~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~sL~~L 590 (847)
|++|++++|.+.. .. |..++.+++|++|++++|.++.+ |..+..+++|+.|++++|+.....|.. .++|+.|
T Consensus 352 L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 8888888888653 22 56778888888888888888744 567788888888888888654433321 2556666
Q ss_pred eccCC
Q 003104 591 GAEDC 595 (847)
Q Consensus 591 ~i~~c 595 (847)
++++|
T Consensus 431 ~l~~n 435 (606)
T 3t6q_A 431 NLSHS 435 (606)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 66543
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.4e-28 Score=295.92 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=131.6
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEE-cCcccCCCccccC---------------------------------
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEI-NNLYSSGNLEYLS--------------------------------- 305 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l-~~~~l~~~~~~~~--------------------------------- 305 (847)
..+|+++.+..+......+.+|.++++|+.|++ ++|.++|..+...
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 367999999988776666689999999999999 7776654411100
Q ss_pred ----------------CCcceEEecC-------CCCCCCCCCC-CCCCcEEEEccCCCccc------------------c
Q 003104 306 ----------------NNLRYLKWHE-------YPFNSLPVSF-RPEKLFKLNLCNSRIKY------------------L 343 (847)
Q Consensus 306 ----------------~~L~~L~~~~-------~~~~~lp~~~-~~~~L~~L~L~~~~l~~------------------l 343 (847)
.....+.+.. |.+..+|..+ .+++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0001111111 2222255555 56666666666666665 6
Q ss_pred ccccc--cCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc-ccc-cccccccCCC-------CCcEEeccCCCCc
Q 003104 344 WKGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTLK-------RLILLNLKDCRNL 411 (847)
Q Consensus 344 ~~~~~--~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~-~l~-~lp~~i~~L~-------~L~~L~L~~c~~l 411 (847)
|+.+. ++++|++|+|++|.....+|. ++++++|++|+|++|. ... .+|..++.++ +|++|++++|...
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 66655 666666666666665555553 6666666666666665 333 4555555444 6666666665544
Q ss_pred cccCc--cccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCC-CCEEEeCCCCC
Q 003104 412 VSFPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCKG 481 (847)
Q Consensus 412 ~~lp~--~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~ 481 (847)
.+|. .++++++|++|++++|... .+| .++.+++|+.|++++|.++.+|..+..+++ |+.|++++|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 5665 5666666666666665544 555 556666666666666666666666666665 66666666653
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.7e-28 Score=288.84 Aligned_cols=334 Identities=16% Similarity=0.149 Sum_probs=215.8
Q ss_pred chhhcCCCCCcEEEEcCcccCC------------------Cccc----cCCCcceEEecCCCC-CCCCCCC-CCCCcEEE
Q 003104 278 AKSFSTMSNLRLLEINNLYSSG------------------NLEY----LSNNLRYLKWHEYPF-NSLPVSF-RPEKLFKL 333 (847)
Q Consensus 278 ~~~f~~~~~Lr~L~l~~~~l~~------------------~~~~----~~~~L~~L~~~~~~~-~~lp~~~-~~~~L~~L 333 (847)
+.+|.++++|++|++++|.+++ .+.. ...+|++|++.+|.+ ..+|..+ .+++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3457777778888887777776 2222 235777777777764 4567666 67777777
Q ss_pred EccCCC-cc--ccccccccC------cCCCEEEcCCCCCCCCCCC---CCCCCcCcEeeccCccccccccccccCCCCCc
Q 003104 334 NLCNSR-IK--YLWKGIKPL------KELKFMNLSHSCNLIRTPD---FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI 401 (847)
Q Consensus 334 ~L~~~~-l~--~l~~~~~~l------~~L~~L~L~~~~~l~~~p~---~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 401 (847)
++++|+ ++ .+|..+..+ ++|++|+|++|.+. .+|. ++++++|++|++++|...+.+| .++.+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 777776 66 377666665 77777777777666 5554 7777777777777777665777 777777777
Q ss_pred EEeccCCCCccccCccccCCCC-ccEEEecCccCCCcCCccccCCC--cccEEEecCcccc-ccCcccc-------CCCC
Q 003104 402 LLNLKDCRNLVSFPKNVCLMKS-LKILCLCGCLKLEKLPQDLGEVE--CLEELDVGGTAIR-QIPPSIV-------QLVN 470 (847)
Q Consensus 402 ~L~L~~c~~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~L~~~~i~-~lp~~i~-------~l~~ 470 (847)
+|++++|... .+|..++.+++ |++|++++|... .+|..+..+. +|+.|++++|.++ .+|..+. .+++
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7777776543 77777777777 777777777654 6676666544 6777777777776 3555565 6667
Q ss_pred CCEEEeCCCCCCCCCcCcc-hhhcccccCCCCCCCccccCCC--C-------CCCCCCCEEeccCCCCCCCCCCcccC--
Q 003104 471 LKIFSLHGCKGQPPKILSS-NFFLSLLLPNKNSDSMCLSFPR--F-------TGLSSLQTLDLSDCNLLEGAIPSDIG-- 538 (847)
Q Consensus 471 L~~L~L~~~~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~l~~--l-------~~l~~L~~L~Ls~~~l~~~~lp~~l~-- 538 (847)
|++|++++|.... .+... ..+..+.......+.+. .+|. + ..+++|+.|+|++|++. .+|..+.
T Consensus 435 L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~ 510 (636)
T 4eco_A 435 VSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRAT 510 (636)
T ss_dssp EEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTT
T ss_pred CCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhc
Confidence 7777777776542 22221 12233321111111221 2332 2 22338888888888876 6888776
Q ss_pred CCCCCCEEECcCCCCcccchhhhcCCCCCEEeecC------CCCCccCCCCC---CCcceeeccCCccccccccccccCC
Q 003104 539 SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK------CRNLKSLPELP---PEIVFVGAEDCTSLETISAFAKLSR 609 (847)
Q Consensus 539 ~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~lp---~sL~~L~i~~c~~L~~l~~~~~~~~ 609 (847)
.+++|+.|+|++|+++.+|..+.++++|+.|+|++ |+..+.+|.-. ++|+.|++++|.- +.++.
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~------ 583 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE------ 583 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS------
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH------
Confidence 88888888888888888888888888888888854 44455555421 4444444444322 33322
Q ss_pred CCCceEEEccCCCcchhhhhhhhHH
Q 003104 610 SPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 610 ~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
.+. ++|+.+++++|++.
T Consensus 584 ------~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 584 ------KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp ------CCC--TTCCEEECCSCTTC
T ss_pred ------hHh--CcCCEEECcCCCCc
Confidence 122 67777777777543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.2e-27 Score=281.31 Aligned_cols=315 Identities=20% Similarity=0.170 Sum_probs=154.9
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCc---cccCCCcceEEecCCCCCCC--CCCCCCCCcEEEE
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL---EYLSNNLRYLKWHEYPFNSL--PVSFRPEKLFKLN 334 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~---~~~~~~L~~L~~~~~~~~~l--p~~~~~~~L~~L~ 334 (847)
..+++.+.+..+....+.+.+|.++++|++|++++|.+.+.. .....+|++|++.+|.+..+ |..+.+++|++|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 445666666666555666666667777777777666666521 12234677777777776655 4444667777777
Q ss_pred ccCCCcccc-ccccccCcCCC--EEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccc-------------------
Q 003104 335 LCNSRIKYL-WKGIKPLKELK--FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQ------------------- 392 (847)
Q Consensus 335 L~~~~l~~l-~~~~~~l~~L~--~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~------------------- 392 (847)
+++|.++.+ +..+..+++|+ .|++++|......|......+|++|++++|......+.
T Consensus 160 L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred cccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccc
Confidence 777777655 33466666666 66777766655555433334444444444321110000
Q ss_pred -------cccCCC--CCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccccc-C
Q 003104 393 -------SVGTLK--RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI-P 462 (847)
Q Consensus 393 -------~i~~L~--~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p 462 (847)
.+..+. +|+.|++++|......+..+..+++|++|++++|.. ..+|..+..+++|++|++++|.++.+ |
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred ccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCch
Confidence 000010 344555555443333333345555555555555432 24555555555555555555555533 3
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcC-cchhhcccccCCCCCCCcccc---CCCCCCCCCCCEEeccCCCCCCCCCCcccC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKIL-SSNFFLSLLLPNKNSDSMCLS---FPRFTGLSSLQTLDLSDCNLLEGAIPSDIG 538 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~---l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 538 (847)
..+..+++|++|++++|......+. ....+..+.......+..... ...+..+++|++|++++|.+. +..|..++
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~ 397 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFK 397 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhc
Confidence 3445555555555555543211111 122222221111111111111 112455555555555555543 23444555
Q ss_pred CCCCCCEEECcCCCCccc-c-hhhhcCCCCCEEeecCCCC
Q 003104 539 SLFSLEAIDLSGNNFFSL-P-SSINQLLKLKILCLEKCRN 576 (847)
Q Consensus 539 ~l~sL~~L~Ls~n~l~~l-p-~~i~~l~~L~~L~L~~c~~ 576 (847)
.+++|++|++++|.++.. | ..+..+++|+.|++++|..
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 555555555555555522 2 2245555555555555543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.4e-27 Score=283.03 Aligned_cols=355 Identities=18% Similarity=0.103 Sum_probs=220.0
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCC-CCC-CCCCcEEEE
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLP-VSF-RPEKLFKLN 334 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp-~~~-~~~~L~~L~ 334 (847)
...++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.++.+..+| ..+ .+.+|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 45566666666655566666666666666666666666554332 2346666666666666665 233 566666666
Q ss_pred ccCCCcc--ccccccccCcCCCEEEcCCCCCCCCCCC-CC---------------------------CCCcCcEeeccCc
Q 003104 335 LCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FT---------------------------GVPNLERLNLEGC 384 (847)
Q Consensus 335 L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~---------------------------~l~~L~~L~L~~c 384 (847)
+++|.+. .+|..+.++++|++|++++|.+....|. ++ ...+|++|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 6666665 3566666666666666666654433221 11 1113444444443
Q ss_pred ccc-----------------------------------------------------------------------------
Q 003104 385 TRL----------------------------------------------------------------------------- 387 (847)
Q Consensus 385 ~~l----------------------------------------------------------------------------- 387 (847)
...
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 211
Q ss_pred ---ccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccccc---
Q 003104 388 ---LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI--- 461 (847)
Q Consensus 388 ---~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l--- 461 (847)
..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.++.+
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred ccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 1222 455667888899998876 78884 5 8899999999988665544 456788888888888888755
Q ss_pred CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC--CCCCCCCCCEEeccCCCCCCCCCCcccCC
Q 003104 462 PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP--RFTGLSSLQTLDLSDCNLLEGAIPSDIGS 539 (847)
Q Consensus 462 p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 539 (847)
|..+..+++|++|++++|.... .+..+..+..+.......+......| .+..+++|+.|++++|.+. +..|..++.
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 446 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLG 446 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-ECCTTTTTT
T ss_pred hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-ccchhhhcC
Confidence 6777888888888888876322 12233333444222222222222233 3777888888888888854 356777888
Q ss_pred CCCCCEEECcCCCCcc--cchhhhcCCCCCEEeecCCCCCccCCCCC---CCcceeeccCCccccccccccccCCCCCce
Q 003104 540 LFSLEAIDLSGNNFFS--LPSSINQLLKLKILCLEKCRNLKSLPELP---PEIVFVGAEDCTSLETISAFAKLSRSPNIA 614 (847)
Q Consensus 540 l~sL~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~ 614 (847)
+++|++|++++|.++. +|..++.+++|+.|+|++|+.....|... ++|+.|++++| .+..+ .+
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-----------~~ 514 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFL-----------DS 514 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCE-----------EG
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCc-----------CH
Confidence 8888888888888874 67778888888888888885444444311 44555555444 22222 11
Q ss_pred EEEccCCCcchhhhhhhhHH
Q 003104 615 LNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 615 ~~~~nc~~L~~l~~~~n~~~ 634 (847)
..|.++++|+.+++++|++.
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC
T ss_pred HHccCCCcCCEEECCCCcCc
Confidence 22566777777777777654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8.9e-28 Score=284.67 Aligned_cols=383 Identities=21% Similarity=0.167 Sum_probs=277.3
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCC-CCCC-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.+..+ |..| .+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 6788999999888888889999999999999999988765442 346899999999999988 6667 8999999999
Q ss_pred cCCCccccc-cccccCcCCCEEEcCCCCCCC-CCC-CCCCCCcCcEeeccCccccccccccccCCC--------------
Q 003104 336 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLI-RTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLK-------------- 398 (847)
Q Consensus 336 ~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~-------------- 398 (847)
++|.+..++ ..+.++++|++|++++|.+.. .+| .++++++|++|++++|......+..++.++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 999999887 669999999999999998775 445 499999999999999876554444333332
Q ss_pred -------------CCcEEeccCCCC-------------------------------------------------------
Q 003104 399 -------------RLILLNLKDCRN------------------------------------------------------- 410 (847)
Q Consensus 399 -------------~L~~L~L~~c~~------------------------------------------------------- 410 (847)
+|+.|++++|..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 344444444422
Q ss_pred -------------------------ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-ccCcc
Q 003104 411 -------------------------LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPS 464 (847)
Q Consensus 411 -------------------------l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~ 464 (847)
...+| .+..+++|++|++++|.. +.+|. + .+++|++|++++|... .+ .
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--h
Confidence 12233 355667889999999887 88884 4 9999999999999544 33 5
Q ss_pred ccCCCCCCEEEeCCCCCCCC--CcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCC-cccCCCC
Q 003104 465 IVQLVNLKIFSLHGCKGQPP--KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP-SDIGSLF 541 (847)
Q Consensus 465 i~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~ 541 (847)
+..+++|++|++++|..... .+.....+..+.......+......+.+..+++|+.|++++|.+.. ..| ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-TTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-ccChhhhhccc
Confidence 67899999999999974322 1233334444422222222232222348899999999999999764 445 6789999
Q ss_pred CCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCCCCcc-CCCCC---CCcceeeccCCccccccccccccCCCCCceEE
Q 003104 542 SLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKS-LPELP---PEIVFVGAEDCTSLETISAFAKLSRSPNIALN 616 (847)
Q Consensus 542 sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~-lp~lp---~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~ 616 (847)
+|++|++++|.++ ..|..+..+++|+.|++++|+.... +|... ++|+.|++++| .++.+. ...
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-----------~~~ 492 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-----------WGV 492 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-----------TTT
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccC-----------hhh
Confidence 9999999999999 4678899999999999999975553 45422 56666666655 233222 122
Q ss_pred EccCCCcchhhhhhhhHHHHHHHHHhhcCCCCCCceEEecCCCC---CCCCcc
Q 003104 617 FLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLPGNE---IPRWFR 666 (847)
Q Consensus 617 ~~nc~~L~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~lpg~~---iP~wf~ 666 (847)
|.++++|+.+++++|++.+..+. ..........+.+.++. +|.+|.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~p~~~~ 541 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFNRIETSKGILQ 541 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTSCCCCEESCGG
T ss_pred hcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCCcCcccCHhHh
Confidence 67899999999999987643221 11222234455666664 455543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.9e-27 Score=287.95 Aligned_cols=315 Identities=13% Similarity=0.089 Sum_probs=162.8
Q ss_pred CCCCCcEEEEcCcccCCCcccc---CCCcceEEecCCC-CCC--CCCCC--------CCCCcEEEEccCCCcccccc--c
Q 003104 283 TMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYP-FNS--LPVSF--------RPEKLFKLNLCNSRIKYLWK--G 346 (847)
Q Consensus 283 ~~~~Lr~L~l~~~~l~~~~~~~---~~~L~~L~~~~~~-~~~--lp~~~--------~~~~L~~L~L~~~~l~~l~~--~ 346 (847)
++++|+.|++++|.+.+.++.. ..+|+.|++.+|. +.. +|..+ .+++|++|++++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 5555555555555444433321 2345555555544 332 33221 22355555555555555554 4
Q ss_pred cccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCC-CcEEeccCCCCccccCccccCCCC--
Q 003104 347 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKR-LILLNLKDCRNLVSFPKNVCLMKS-- 423 (847)
Q Consensus 347 ~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~L~~c~~l~~lp~~i~~l~~-- 423 (847)
+.++++|+.|+|++|.+. .+|.++.+++|++|+|++|... .+|..+..+++ |+.|++++|... .+|..+..+..
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 555555555555555443 4445555555555555554433 45555555555 555555554422 44444433322
Q ss_pred ccEEEecCccCCCcCCcc---cc--CCCcccEEEecCccccccCcccc-CCCCCCEEEeCCCCCCCCCcCcchhhccccc
Q 003104 424 LKILCLCGCLKLEKLPQD---LG--EVECLEELDVGGTAIRQIPPSIV-QLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 497 (847)
Q Consensus 424 L~~L~Ls~c~~l~~lp~~---l~--~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l 497 (847)
|+.|++++|...+.+|.. ++ .+++|+.|++++|.++.+|..+. .+++|+.|++++|.... .+.....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~------ 718 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLK------ 718 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSS------
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhc------
Confidence 555555555444433321 11 12245555555555555554442 45555555555554221 0000000
Q ss_pred CCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccC--CCCCCCEEECcCCCCcccchhhhcCCCCCEEeecC--
Q 003104 498 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIG--SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK-- 573 (847)
Q Consensus 498 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~--~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~-- 573 (847)
...+.+.++++|+.|+|++|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++
T Consensus 719 ---------~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 719 ---------PKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp ---------CTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred ---------cccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 00011234458888888888866 6888776 88888888888888888888888888888888876
Q ss_pred ----CCCCccCCCC---CCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhH
Q 003104 574 ----CRNLKSLPEL---PPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 633 (847)
Q Consensus 574 ----c~~L~~lp~l---p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~ 633 (847)
|...+.+|.. .++|+.|++++|.- ..++.. + +++|+.+++++|++
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~------------l--~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK------------L--TPQLYILDIADNPN 839 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC------------C--CSSSCEEECCSCTT
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh------------h--cCCCCEEECCCCCC
Confidence 4444555531 14455555554422 333321 1 24677777777754
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=286.40 Aligned_cols=325 Identities=18% Similarity=0.207 Sum_probs=193.3
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCc----cccCCCcceEEecCCCCCCC-CCCC-CCCCcEEE
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL----EYLSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKL 333 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~----~~~~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L 333 (847)
...++.+.+..+....+.+..|.++++|++|++++|...+.+ .....+|++|++.+|.+..+ |..| .+.+|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 457888888888888888888999999999999988655433 12346899999999998877 5666 88899999
Q ss_pred EccCCCccc-cccc--cccCcCCCEEEcCCCCCCCCCC--CCCCCCcCcEeeccCccccccccccccCC--CCCcEEecc
Q 003104 334 NLCNSRIKY-LWKG--IKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTL--KRLILLNLK 406 (847)
Q Consensus 334 ~L~~~~l~~-l~~~--~~~l~~L~~L~L~~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~~i~~L--~~L~~L~L~ 406 (847)
+|++|.+.. +|.. +.++++|++|+|++|.+....+ .|+++++|++|+|++|......+..++.+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 999998885 4544 8889999999999998776654 38889999999999887766666666665 666666666
Q ss_pred CCCCccccCccccCCCC------ccEEEecCccCCCcCCccccC------------------------------------
Q 003104 407 DCRNLVSFPKNVCLMKS------LKILCLCGCLKLEKLPQDLGE------------------------------------ 444 (847)
Q Consensus 407 ~c~~l~~lp~~i~~l~~------L~~L~Ls~c~~l~~lp~~l~~------------------------------------ 444 (847)
+|......|..++.+.+ |++|++++|...+..|..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 66655555544444433 666666665433322221110
Q ss_pred --CCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCCCCE
Q 003104 445 --VECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQT 520 (847)
Q Consensus 445 --l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~L~~ 520 (847)
.++|+.|++++|.+..+ |..+..+++|+.|++++|......+..+..+..+.......+.+....| .+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13455555555555533 3344555555666655554332222222222222111111111111112 2555555555
Q ss_pred EeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCCCCccee
Q 003104 521 LDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFV 590 (847)
Q Consensus 521 L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L 590 (847)
|++++|.+. +..+..+..+++|+.|+|++|.++.++. +++|+.|++++|+ ++.+|..+.+++.|
T Consensus 343 L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~-l~~l~~~~~~l~~L 406 (844)
T 3j0a_A 343 IDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK-LVTLPKINLTANLI 406 (844)
T ss_dssp EECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCC-CCCCCCCCTTCCEE
T ss_pred EECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCC-ccccccccccccee
Confidence 555555542 1233345555555555555555554442 4445555555442 23344333333333
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.3e-26 Score=250.65 Aligned_cols=275 Identities=17% Similarity=0.216 Sum_probs=119.4
Q ss_pred EEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc-ccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcc
Q 003104 263 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 341 (847)
Q Consensus 263 v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~-~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~ 341 (847)
++.+.+..+....++ .+..+++|++|++++|.+.+..+ ....+|++|++.++.+..+|....+++|++|++++|.+.
T Consensus 46 L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCC
T ss_pred ccEEEEeCCccccch--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCccc
Confidence 344444444333332 24445555555555544443221 122344444444444444443224444444444444444
Q ss_pred ccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCC
Q 003104 342 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 421 (847)
Q Consensus 342 ~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l 421 (847)
.++. +..+++|++|++++|.....++.+..+++|++|++++|.... ++. +..+++|+.|++++|. +..++. +..+
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l 198 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ-IEDISP-LASL 198 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC-CCCCGG-GGGC
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc-cccccc-ccCC
Confidence 4433 444444444444444444444444444444444444443222 111 4444444444444443 222222 3344
Q ss_pred CCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCC
Q 003104 422 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 501 (847)
Q Consensus 422 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~ 501 (847)
++|+.|++++|...+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|....
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------------------ 257 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD------------------ 257 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------------------
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC------------------
Confidence 444444444443322211 3444444444444444444433 4444444444444443211
Q ss_pred CCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCC
Q 003104 502 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 502 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~ 575 (847)
++.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.++ ..|..+..+++|+.|++++|+
T Consensus 258 -------~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 258 -------INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -------ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 1223444455555555554331 2 22444455555555555444 223334445555555555543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=3.1e-27 Score=276.58 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=135.1
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+ ....+|++|++.+|.+..+|.. + .+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 568888888887777778889999999999999998876443 2346899999999999888875 4 7889999999
Q ss_pred cCCCccc--cccccccCcCCCEEEcCCCCCCCCCC--CCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCc
Q 003104 336 CNSRIKY--LWKGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL 411 (847)
Q Consensus 336 ~~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l 411 (847)
++|.++. .|..+.++++|++|++++|.....+| .+.++++|++|++++|......|..++.+++|++|++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~- 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES- 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-
Confidence 9999985 46678899999999999987666655 488899999999999888777888888887777777777553
Q ss_pred cccCcc-ccCCCCccEEEecCccCCC
Q 003104 412 VSFPKN-VCLMKSLKILCLCGCLKLE 436 (847)
Q Consensus 412 ~~lp~~-i~~l~~L~~L~Ls~c~~l~ 436 (847)
..+|.. +..+++|++|++++|...+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 333332 2346666666666665443
No 15
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.7e-26 Score=259.35 Aligned_cols=305 Identities=17% Similarity=0.115 Sum_probs=242.6
Q ss_pred hhhcCCCCCcEEEEcCcccCCCcc-ccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEE
Q 003104 279 KSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMN 357 (847)
Q Consensus 279 ~~f~~~~~Lr~L~l~~~~l~~~~~-~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~ 357 (847)
..+.++++|+.|+++++.+.+... ..+.+|++|++.++.+..+| ...+++|++|++++|.++.++ +..+++|++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 356678889999998888876421 23468899999999888886 337889999999999998875 88899999999
Q ss_pred cCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCc
Q 003104 358 LSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK 437 (847)
Q Consensus 358 L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 437 (847)
+++|.+.. +| ++.+++|++|++++|.... + .++.+++|++|++++|...+.++ +..+++|++|++++|...+
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-
Confidence 99987655 44 8889999999999986544 4 38889999999999987777773 6788999999999987554
Q ss_pred CCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCC
Q 003104 438 LPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 517 (847)
Q Consensus 438 lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~ 517 (847)
+| ++.+++|+.|++++|.++.++ ++.+++|+.|++++|.... +| +..+++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-------------------------ip-~~~l~~ 234 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-------------------------ID-VTPLTQ 234 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-------------------------CC-CTTCTT
T ss_pred ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-------------------------cC-ccccCC
Confidence 55 788899999999999998874 7888999999999886432 34 677889
Q ss_pred CCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-----------ccchhhhcCCCCCEEeecCCCCCccCCCCCCC
Q 003104 518 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-----------SLPSSINQLLKLKILCLEKCRNLKSLPELPPE 586 (847)
Q Consensus 518 L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-----------~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~s 586 (847)
|+.|++++|++.. +| ++.+++|+.|++++|+++ .+| ++.+++|+.|++++|+.++.+|.-.++
T Consensus 235 L~~L~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 235 LTYFDCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp CSEEECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred CCEEEeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc
Confidence 9999999998753 33 445666666655555444 334 467899999999999999999987789
Q ss_pred cceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 587 IVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 587 L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
|+.|++++|++|+.+....|.... +.+.+|++|+.+++++|++.
T Consensus 309 L~~L~l~~~~~L~~L~L~~N~l~~----l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNTELTE----LDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSC----CCCTTCTTCSEEECCSSCCC
T ss_pred ceEechhhcccCCEEECCCCcccc----cccccCCcCcEEECCCCCCC
Confidence 999999999999999987763322 35899999999999999876
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=267.03 Aligned_cols=331 Identities=16% Similarity=0.150 Sum_probs=217.7
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCCCCCCCcEEEEccC
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 337 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~ 337 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.+..+|.. .+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 5778888888877788888899999999999999988775432 246899999999999888888 888999999999
Q ss_pred CCccc--cccccccCcCCCEEEcCCCCCCCCCCCCCCCCcC--cEeeccCccc--cccccccccCC--------------
Q 003104 338 SRIKY--LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVGTL-------------- 397 (847)
Q Consensus 338 ~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L--~~L~L~~c~~--l~~lp~~i~~L-------------- 397 (847)
|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 99885 56788889999999998886543 335555555 6666666654 33333333331
Q ss_pred ---------------------------------------------------------------------CCCcEEeccCC
Q 003104 398 ---------------------------------------------------------------------KRLILLNLKDC 408 (847)
Q Consensus 398 ---------------------------------------------------------------------~~L~~L~L~~c 408 (847)
++|++|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 14555555555
Q ss_pred CCccccCccc-----cCCCCccEEEecCccCCCcCCc-------------------------c-ccCCCcccEEEecCcc
Q 003104 409 RNLVSFPKNV-----CLMKSLKILCLCGCLKLEKLPQ-------------------------D-LGEVECLEELDVGGTA 457 (847)
Q Consensus 409 ~~l~~lp~~i-----~~l~~L~~L~Ls~c~~l~~lp~-------------------------~-l~~l~~L~~L~L~~~~ 457 (847)
...+.+|..+ ..+++|+.+++++|.. .+|. . ...+++|++|++++|.
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 5444666655 5555555555555443 2220 0 1577889999999999
Q ss_pred ccc-cCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCc
Q 003104 458 IRQ-IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPS 535 (847)
Q Consensus 458 i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~ 535 (847)
++. +|..++.+++|+.|++++|..... ..+|. +..+++|++|++++|.+.. .+|.
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~ 392 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKEL----------------------SKIAEMTTQMKSLQQLDISQNSVSY-DEKK 392 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBH----------------------HHHHHHHTTCTTCCEEECCSSCCBC-CGGG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCcc----------------------ccchHHHhhCCCCCEEECCCCcCCc-cccc
Confidence 885 788888999999999998874320 01222 5566777777777776542 3554
Q ss_pred c-cCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCCCCccCCCC---CCCcceeeccCCccccccccccccCCC
Q 003104 536 D-IGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPEL---PPEIVFVGAEDCTSLETISAFAKLSRS 610 (847)
Q Consensus 536 ~-l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~c~~L~~l~~~~~~~~~ 610 (847)
. +..+++|++|++++|.++ .+|..+. ++|+.|++++|+ ++.+|.- .++|++|++++| .++.++..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~------ 462 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDG------ 462 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTT------
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHH------
Confidence 3 566677777777777765 4444332 567777777763 4455431 144444554443 23333221
Q ss_pred CCceEEEccCCCcchhhhhhhhHH
Q 003104 611 PNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 611 ~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
.|.++++|+.+++++|++.
T Consensus 463 -----~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 463 -----IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -----TTTTCTTCCEEECCSSCBC
T ss_pred -----HhccCCcccEEECcCCCCc
Confidence 2556777777777777654
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4.6e-26 Score=250.38 Aligned_cols=304 Identities=14% Similarity=0.177 Sum_probs=241.6
Q ss_pred hhcCCCCCcEEEEcCcccCCCc-cccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEc
Q 003104 280 SFSTMSNLRLLEINNLYSSGNL-EYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNL 358 (847)
Q Consensus 280 ~f~~~~~Lr~L~l~~~~l~~~~-~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L 358 (847)
.+..+++|+.|+++++.+.... ....++|++|++.++.+..+|....+++|++|++++|.++.++ .+..+++|++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 4567899999999998876532 2335689999999999999988448999999999999999885 5889999999999
Q ss_pred CCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcC
Q 003104 359 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 438 (847)
Q Consensus 359 ~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 438 (847)
++|.+.. .+.+..+++|++|++++|.....++. +..+++|++|++++|... .++. +..+++|++|++++|...+ +
T Consensus 118 ~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~-~ 192 (347)
T 4fmz_A 118 NEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIED-I 192 (347)
T ss_dssp TTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCC-C
T ss_pred cCCcccC-chhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccc-c
Confidence 9997654 44589999999999999977776654 899999999999998744 4444 7789999999999987544 4
Q ss_pred CccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCC
Q 003104 439 PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 518 (847)
Q Consensus 439 p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L 518 (847)
+. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... ++.+..+++|
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-------------------------~~~~~~l~~L 245 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-------------------------LSPLANLSQL 245 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------------------CGGGTTCTTC
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-------------------------CcchhcCCCC
Confidence 44 7889999999999999998766 8889999999999987432 3337788999
Q ss_pred CEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC---CCCCcceeeccCC
Q 003104 519 QTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE---LPPEIVFVGAEDC 595 (847)
Q Consensus 519 ~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~c 595 (847)
++|++++|.+.+ + ..+..+++|++|++++|+++.+| .+..+++|+.|++++|+.....|+ -.++|++|++++|
T Consensus 246 ~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 999999998763 4 46889999999999999999886 689999999999999965433332 1145666666555
Q ss_pred ccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 596 TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 596 ~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
+ ++.+. + +.++++|+.+++++|.+.
T Consensus 322 ~-l~~~~-----------~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 322 H-ITDIR-----------P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp S-CCCCG-----------G--GGGCTTCSEESSSCC---
T ss_pred c-ccccc-----------C--hhhhhccceeehhhhccc
Confidence 3 22221 1 678999999999998764
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.4e-26 Score=264.45 Aligned_cols=337 Identities=14% Similarity=0.095 Sum_probs=216.4
Q ss_pred CCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCC-CCC-CCC-CCCCcEEEEccCCCcccc-ccccccCcCCCEEE
Q 003104 285 SNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFN-SLP-VSF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMN 357 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~-~lp-~~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~ 357 (847)
++|++|++++|.+.+..+. ...+|++|++.++.+. .++ ..| .+++|++|++++|.+..+ |..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888877654332 2457788888777764 443 334 677888888888887765 56677888888888
Q ss_pred cCCCCCCCCCC-C--CCCCCcCcEeeccCcccccccccc-ccCCCCCcEEeccCCCCccccCccccCC--CCccEEEecC
Q 003104 358 LSHSCNLIRTP-D--FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRLILLNLKDCRNLVSFPKNVCLM--KSLKILCLCG 431 (847)
Q Consensus 358 L~~~~~l~~~p-~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~i~~l--~~L~~L~Ls~ 431 (847)
|++|.+....+ . +.++++|++|++++|......|.. ++++++|++|++++|......|..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 88876654333 2 777888888888887766555655 6778888888888877666666666554 6778888877
Q ss_pred ccCCCcCCcc--------ccCCCcccEEEecCcccc-ccCccccC---CCCCCEEEeCCCCCCCCCc----------Ccc
Q 003104 432 CLKLEKLPQD--------LGEVECLEELDVGGTAIR-QIPPSIVQ---LVNLKIFSLHGCKGQPPKI----------LSS 489 (847)
Q Consensus 432 c~~l~~lp~~--------l~~l~~L~~L~L~~~~i~-~lp~~i~~---l~~L~~L~L~~~~~~~~~~----------~~~ 489 (847)
|...+..+.. +..+++|++|++++|.++ ..|..+.. .++|+.|++++|....... ...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 7655433332 235577888888888877 44544433 3778888887774222100 000
Q ss_pred h--hhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc-chhhhcCCC
Q 003104 490 N--FFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLK 565 (847)
Q Consensus 490 ~--~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~ 565 (847)
. ....+.......+.+....|. +..+++|++|+|++|.+. +..|..++.+++|++|+|++|.++.+ |..+..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 0 001121111111222233344 778888888888888865 35567788888888888888888865 567788888
Q ss_pred CCEEeecCCCCCccCCCC---CCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 566 LKILCLEKCRNLKSLPEL---PPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 566 L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
|+.|+|++|+.....|.. .++|++|+++++ .++.++. ..|.++++|+.+++++|++.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-----------GIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-----------hHhccCCcccEEEccCCCcc
Confidence 888888888643333431 144555555443 2333221 12567888888888888665
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.9e-27 Score=274.33 Aligned_cols=329 Identities=19% Similarity=0.178 Sum_probs=241.3
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.++.+..+|. .| .+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4678899988888888888999999999999999988764332 34689999999999988874 45 8999999999
Q ss_pred cCCCcccccc-ccccCcCCCEEEcCCCCCCC-CCC-CCCCCCcCcEeeccCccccccccccccCCCCC----cEEeccCC
Q 003104 336 CNSRIKYLWK-GIKPLKELKFMNLSHSCNLI-RTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL----ILLNLKDC 408 (847)
Q Consensus 336 ~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L----~~L~L~~c 408 (847)
++|.++.++. .++++++|++|++++|.+.. .+| .++++++|++|++++|......+..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999998876 58999999999999998765 345 48999999999999998777667788888888 89999998
Q ss_pred CCccccCccccCCCCccEEEecCcc-------------------------------------------------------
Q 003104 409 RNLVSFPKNVCLMKSLKILCLCGCL------------------------------------------------------- 433 (847)
Q Consensus 409 ~~l~~lp~~i~~l~~L~~L~Ls~c~------------------------------------------------------- 433 (847)
......|..+..+ +|+.|++++|.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7665555545333 67777777652
Q ss_pred ---CCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC
Q 003104 434 ---KLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP 510 (847)
Q Consensus 434 ---~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~ 510 (847)
..+..|..+..+++|+.|++++|.++.+|..+..+ +|++|++++|............+..+.+... ......+
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n---~~~~~~~ 342 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN---KGGNAFS 342 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESC---BSCCBCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCC---ccccccc
Confidence 22345566777889999999999999999888888 9999999988754322222222222222211 1112222
Q ss_pred CCCCCCCCCEEeccCCCCCCC-CCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC--C--CC
Q 003104 511 RFTGLSSLQTLDLSDCNLLEG-AIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE--L--PP 585 (847)
Q Consensus 511 ~l~~l~~L~~L~Ls~~~l~~~-~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~ 585 (847)
...+++|+.|++++|.+... ..|..+..+++|++|++++|.++.+|..+..+++|+.|++++|......|. + .+
T Consensus 343 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 -EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp -CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred -cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 26678888888888876421 115567778888888888888887776777888888888888754333331 1 15
Q ss_pred CcceeeccCC
Q 003104 586 EIVFVGAEDC 595 (847)
Q Consensus 586 sL~~L~i~~c 595 (847)
+|++|++++|
T Consensus 422 ~L~~L~l~~n 431 (570)
T 2z63_A 422 NLIYLDISHT 431 (570)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeCcCC
Confidence 5666665544
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=261.32 Aligned_cols=310 Identities=19% Similarity=0.181 Sum_probs=224.3
Q ss_pred cEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCCCCC
Q 003104 288 RLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNL 364 (847)
Q Consensus 288 r~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l 364 (847)
+.++++++.+...+...+..++.|++.++.+..++. .| .+++|++|+|++|.++.+ |..+.++++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 456666666666556667788888888888888754 45 788999999999999877 667889999999999998766
Q ss_pred CCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcccc
Q 003104 365 IRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG 443 (847)
Q Consensus 365 ~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 443 (847)
...+. |.++++|++|+|++|......+..+..+++|++|++++|......|..+..+++|++|++++|...+..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 55554 78899999999999887777788889999999999999877666677788899999999999876665556688
Q ss_pred CCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEe
Q 003104 444 EVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLD 522 (847)
Q Consensus 444 ~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~ 522 (847)
.+++|+.|++++|.+..++. .+..+++|+.|++++|...... .+......+|++|+
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM-----------------------TPNCLYGLNLTSLS 230 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE-----------------------CTTTTTTCCCSEEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc-----------------------CcccccCccccEEE
Confidence 89999999999999886654 6788899999999987643311 11123344778888
Q ss_pred ccCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEEeecCCCCCccCCCCC---CCcceeeccCCcc
Q 003104 523 LSDCNLLEGAIP-SDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELP---PEIVFVGAEDCTS 597 (847)
Q Consensus 523 Ls~~~l~~~~lp-~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~c~~ 597 (847)
|++|++. .+| ..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+.....|... ++|+.|+++++ .
T Consensus 231 l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 231 ITHCNLT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp EESSCCC--SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-C
T ss_pred CcCCccc--ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-c
Confidence 8877765 355 456777788888888887775543 46777788888888775333223211 33444444333 2
Q ss_pred ccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 598 LETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 598 L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
++.++ ...|.+|++|+.+++++|.+.
T Consensus 308 l~~~~-----------~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 308 LTTLE-----------ESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSCCC-----------GGGBSCGGGCCEEECCSSCEE
T ss_pred CceeC-----------HhHcCCCcccCEEEccCCCcc
Confidence 22222 122667778888887777654
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3e-26 Score=261.58 Aligned_cols=313 Identities=23% Similarity=0.212 Sum_probs=233.2
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc----ccCCCcceEEecCCCCCCC-CCCC-CCCCcEEEE
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE----YLSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLN 334 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~----~~~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L~ 334 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+.++ ....+|++|++.++.+..+ |..+ .+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 568899999888888888999999999999999998765432 2357899999999999877 5566 899999999
Q ss_pred ccCCCccc-cccc--cccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCccccccccccccCC--CCCcEEeccC
Q 003104 335 LCNSRIKY-LWKG--IKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTL--KRLILLNLKD 407 (847)
Q Consensus 335 L~~~~l~~-l~~~--~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L--~~L~~L~L~~ 407 (847)
+++|.++. ++.. +..+++|++|+|++|.+....|. +.++++|++|++++|......+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99999985 4444 88999999999999998887775 8899999999999998877777777665 4556666665
Q ss_pred CCCccccCcc--------ccCCCCccEEEecCccCCCcCCcc-------------------------------------c
Q 003104 408 CRNLVSFPKN--------VCLMKSLKILCLCGCLKLEKLPQD-------------------------------------L 442 (847)
Q Consensus 408 c~~l~~lp~~--------i~~l~~L~~L~Ls~c~~l~~lp~~-------------------------------------l 442 (847)
|.....-+.. +..+++|++|++++|...+..|.. +
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 5433221111 123445555555555433222211 1
Q ss_pred c--CCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCCC
Q 003104 443 G--EVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSL 518 (847)
Q Consensus 443 ~--~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~L 518 (847)
. ..++|+.|++++|.++.+ |..++.+++|+.|++++|.... ..| .+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L 325 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK------------------------IDDNAFWGLTHL 325 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------------------------ECTTTTTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc------------------------cChhHhcCcccC
Confidence 1 236899999999999854 6678999999999999987432 122 37788999
Q ss_pred CEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCcc
Q 003104 519 QTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTS 597 (847)
Q Consensus 519 ~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~ 597 (847)
++|+|++|.+. +..|..++.+++|++|+|++|+++.+ |..+..+++|++|+|++|+ ++.+|.- .+.++++
T Consensus 326 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~ 396 (455)
T 3v47_A 326 LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDG-------IFDRLTS 396 (455)
T ss_dssp CEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTT
T ss_pred CEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHh-------HhccCCc
Confidence 99999999864 35577889999999999999999966 7788999999999999985 4455431 1234555
Q ss_pred ccccccccc
Q 003104 598 LETISAFAK 606 (847)
Q Consensus 598 L~~l~~~~~ 606 (847)
|+.+....|
T Consensus 397 L~~L~l~~N 405 (455)
T 3v47_A 397 LQKIWLHTN 405 (455)
T ss_dssp CCEEECCSS
T ss_pred ccEEEccCC
Confidence 555555443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.2e-26 Score=265.70 Aligned_cols=331 Identities=18% Similarity=0.145 Sum_probs=217.2
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCCCCCCCcEEEEccC
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 337 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~ 337 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.+..+|.. .+++|++|++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 5788899998888888889999999999999999998865433 246899999999999999988 899999999999
Q ss_pred CCccccc--cccccCcCCCEEEcCCCCCCCCCCCCCCCCcC--cEeeccCccc--cccccccccC---------------
Q 003104 338 SRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVGT--------------- 396 (847)
Q Consensus 338 ~~l~~l~--~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L--~~L~L~~c~~--l~~lp~~i~~--------------- 396 (847)
|.++.++ ..+.++++|++|+|++|.+.. .++..+++| ++|++++|.. ....|.++..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 9999765 689999999999999987654 345666666 9999998876 4444444433
Q ss_pred -----------CCC-------------------------------------------------------CcEEeccCCCC
Q 003104 397 -----------LKR-------------------------------------------------------LILLNLKDCRN 410 (847)
Q Consensus 397 -----------L~~-------------------------------------------------------L~~L~L~~c~~ 410 (847)
+++ |++|++++|..
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 233 44444444433
Q ss_pred ccccCccc-----cCCCC--------------------------ccEEEecCccCCCcCCccccCCCcccEEEecCcccc
Q 003104 411 LVSFPKNV-----CLMKS--------------------------LKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 411 l~~lp~~i-----~~l~~--------------------------L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
.+.+|..+ ..+++ |++|++++|...... ..+.+++|++|++++|.++
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccc
Confidence 33444433 22221 333333332221100 0167788999999999888
Q ss_pred c-cCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCc-c
Q 003104 460 Q-IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPS-D 536 (847)
Q Consensus 460 ~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~-~ 536 (847)
. +|..++.+++|+.|++++|..... ..+|. +..+++|+.|++++|.+.. .+|. .
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~ 423 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNF----------------------FKVALMTKNMSSLETLDVSLNSLNS-HAYDRT 423 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBT----------------------THHHHTTTTCTTCCEEECTTSCCBS-CCSSCC
T ss_pred cchhhhhcccCCCCEEECCCCCcCCc----------------------ccchhhhcCCCCCCEEECCCCcCCC-ccChhh
Confidence 5 677888899999999988864321 01111 5566777777777777542 3443 3
Q ss_pred cCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCCCCccCCCCC---CCcceeeccCCccccccccccccCCCCC
Q 003104 537 IGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPELP---PEIVFVGAEDCTSLETISAFAKLSRSPN 612 (847)
Q Consensus 537 l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~c~~L~~l~~~~~~~~~~~ 612 (847)
+..+++|++|++++|+++ .+|..+. ++|+.|+|++| .++.+|.-. ++|++|+++++ .|+.++..
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-------- 491 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG-------- 491 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT--------
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH--------
Confidence 566677777777777765 3443332 56777777776 344555311 33444444332 22222211
Q ss_pred ceEEEccCCCcchhhhhhhhHH
Q 003104 613 IALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 613 ~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
.|.++++|+.+++++|.+.
T Consensus 492 ---~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 492 ---VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ---STTTCTTCCCEECCSCCBC
T ss_pred ---HHhcCCCCCEEEecCCCcC
Confidence 2566777777777777654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=266.47 Aligned_cols=352 Identities=16% Similarity=0.106 Sum_probs=227.5
Q ss_pred EEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCC-CCCC-CCCCcEEEEccCCC
Q 003104 265 AIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNLCNSR 339 (847)
Q Consensus 265 ~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L~L~~~~ 339 (847)
.+.+..+....++...+ ++|+.|++++|.+.+..+ ....+|++|++.+|.+..+ |..| .+++|++|++++|.
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 34555555555554333 789999999998887653 2346899999999988887 4555 78899999999999
Q ss_pred ccccccccccCcCCCEEEcCCCCCCC-CCC-CCCCCCcCcEeeccCccccccccccccCCCCC--cEEeccCCCC--ccc
Q 003104 340 IKYLWKGIKPLKELKFMNLSHSCNLI-RTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL--ILLNLKDCRN--LVS 413 (847)
Q Consensus 340 l~~l~~~~~~l~~L~~L~L~~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L--~~L~L~~c~~--l~~ 413 (847)
++.+|.. .+++|++|+|++|.+.. ..| .++++++|++|++++|.... ..+..+++| +.|++++|.. ...
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 9988877 78999999999988765 344 48889999999999887544 456777777 9999988876 444
Q ss_pred cCccccC--------------------------CCCccEEEecCcc-------CCCcCCccccC----------------
Q 003104 414 FPKNVCL--------------------------MKSLKILCLCGCL-------KLEKLPQDLGE---------------- 444 (847)
Q Consensus 414 lp~~i~~--------------------------l~~L~~L~Ls~c~-------~l~~lp~~l~~---------------- 444 (847)
.|..+.. +++|+.|++++|. ..+.+| .++.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence 4544433 4455555555543 111111 1111
Q ss_pred -----------CCcccEEEecCcccc-ccCccc-----cCCCCCCEEEeCCCCCCCCCc-Ccchh------hcccccCCC
Q 003104 445 -----------VECLEELDVGGTAIR-QIPPSI-----VQLVNLKIFSLHGCKGQPPKI-LSSNF------FLSLLLPNK 500 (847)
Q Consensus 445 -----------l~~L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~~~~~~-~~~~~------l~~l~l~~~ 500 (847)
+++|++|++++|.++ .+|..+ +.+++|+.+++++|... .| ..... +..+.+...
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCceeEEEcCCC
Confidence 236777777777777 777777 77788888888777652 12 11111 122211111
Q ss_pred CCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcc---cchhhhcCCCCCEEeecCCCCC
Q 003104 501 NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS---LPSSINQLLKLKILCLEKCRNL 577 (847)
Q Consensus 501 ~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~c~~L 577 (847)
. . ...+....+++|++|++++|.+. +.+|..++.+++|++|+|++|+++. +|..++.+++|+.|++++|+..
T Consensus 313 ~---l-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 313 R---M-VHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp C---C-CCCCCCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred c---c-ccccchhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 1 1 11111257778888888888865 3677778888888888888888874 4566788888888888888654
Q ss_pred ccCCC----CCCCcceeeccCC-----------ccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 578 KSLPE----LPPEIVFVGAEDC-----------TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 578 ~~lp~----lp~sL~~L~i~~c-----------~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
..+|. ..++|++|++++| ++|+.+....|... ..+..+.++++|+.+++++|++.
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence 44553 1267777777666 34444444443211 11222346677777777766544
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=9.1e-26 Score=271.15 Aligned_cols=220 Identities=18% Similarity=0.123 Sum_probs=159.7
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.++.+..+|.. | .+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 5688888888888888888899999999999999988876543 356899999999999999874 5 8899999999
Q ss_pred cCCCccccc-cccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccccccccccc--CCCCCcEEeccCCCCc
Q 003104 336 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVG--TLKRLILLNLKDCRNL 411 (847)
Q Consensus 336 ~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~--~L~~L~~L~L~~c~~l 411 (847)
++|.+..++ ..+.++++|++|+|++|......|. ++++++|++|++++|......+..++ .+++|+.|++++|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999999887 4688999999999999987776664 88899999999999876554444443 4577888888887654
Q ss_pred cccCccccCC---------------------------CCccEEEecCccCCCcCCccccCCCc--ccEEEecCccccccC
Q 003104 412 VSFPKNVCLM---------------------------KSLKILCLCGCLKLEKLPQDLGEVEC--LEELDVGGTAIRQIP 462 (847)
Q Consensus 412 ~~lp~~i~~l---------------------------~~L~~L~Ls~c~~l~~lp~~l~~l~~--L~~L~L~~~~i~~lp 462 (847)
+..|..+..+ ++|+.|++++|...+..|..+..++. |++|++++|.++.++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 4444333222 34555555555555555555555543 666666666665443
Q ss_pred -ccccCCCCCCEEEeCCCC
Q 003104 463 -PSIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 463 -~~i~~l~~L~~L~L~~~~ 480 (847)
..++.+++|++|++++|.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTTTTTCTTCCEEECCSCC
T ss_pred cccccCcccccEeeCCCCc
Confidence 345566666666666654
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=271.44 Aligned_cols=358 Identities=17% Similarity=0.120 Sum_probs=217.2
Q ss_pred CCCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCC-CC-CCCCcEEE
Q 003104 259 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKL 333 (847)
Q Consensus 259 ~~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L 333 (847)
+...++.+.+..+....+.+.+|.++++|++|++++|.+.+..+ ....+|++|++.++.+..+|. .+ .+++|++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 45677888888777777777888888888888888887765432 234578888888888888876 34 78888888
Q ss_pred EccCCCccc--cccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcC----cEeeccCccccc------------------
Q 003104 334 NLCNSRIKY--LWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNL----ERLNLEGCTRLL------------------ 388 (847)
Q Consensus 334 ~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L----~~L~L~~c~~l~------------------ 388 (847)
++++|.++. +|..+.++++|++|++++|.+....+. ++.+++| ++|++++|....
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 888888875 677788888888888888765543332 3333333 334443332111
Q ss_pred ---------------------------------------------------------------cccccccCCCCCcEEec
Q 003104 389 ---------------------------------------------------------------EVHQSVGTLKRLILLNL 405 (847)
Q Consensus 389 ---------------------------------------------------------------~lp~~i~~L~~L~~L~L 405 (847)
.+|..+..+++|+.|++
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 12233344555555555
Q ss_pred cCCCCccccCccccCCCCccEEEecCccC---------------------CCcCCccccCCCcccEEEecCcccccc---
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLK---------------------LEKLPQDLGEVECLEELDVGGTAIRQI--- 461 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~---------------------l~~lp~~l~~l~~L~~L~L~~~~i~~l--- 461 (847)
++|. +..+|..+..+ +|++|++++|.. .+..+. ..+++|++|++++|.++..
T Consensus 290 ~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 290 VSVT-IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp ESCE-ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred cCcc-chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 5543 22444444444 444444444432 222222 4556666666666666643
Q ss_pred CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC--CCCCCCCCCEEeccCCCCCCCCCCcccCC
Q 003104 462 PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP--RFTGLSSLQTLDLSDCNLLEGAIPSDIGS 539 (847)
Q Consensus 462 p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 539 (847)
|..+..+++|++|++++|......+ ....+..+.......+......+ .+..+++|++|++++|.+. +..|..+..
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 443 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG 443 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-ECCTTTTTT
T ss_pred cccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-ccchhhhhc
Confidence 4556666777777777665322111 12223333211111122212222 2677888888888888754 356777788
Q ss_pred CCCCCEEECcCCCCc--ccchhhhcCCCCCEEeecCCCCCccCCCC---CCCcceeeccCCccccccccccccCCCCCce
Q 003104 540 LFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKSLPEL---PPEIVFVGAEDCTSLETISAFAKLSRSPNIA 614 (847)
Q Consensus 540 l~sL~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~ 614 (847)
+++|++|+|++|.++ .+|..+..+++|+.|+|++|+.....|.. .++|++|++++| .++.++.
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~----------- 511 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPD----------- 511 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-----------
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCH-----------
Confidence 888888888888876 57878888888888888888644433431 145555555554 2333221
Q ss_pred EEEccCCCcchhhhhhhhHH
Q 003104 615 LNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 615 ~~~~nc~~L~~l~~~~n~~~ 634 (847)
..|.+|++|+.+++++|.+.
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBC
T ss_pred HHhhcccCCcEEEecCCccc
Confidence 12677888888888887654
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=257.77 Aligned_cols=291 Identities=21% Similarity=0.236 Sum_probs=216.2
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|+.|++++|.+.+..+. ...+|++|++.++.+..+|.. | .+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4567777777777777777888888888888888877654332 235788888888888888765 3 6788888888
Q ss_pred cCCCcccc-ccccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccc
Q 003104 336 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 413 (847)
Q Consensus 336 ~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~ 413 (847)
++|.+..+ +..+..+++|++|+|++|.+....+ .|.++++|++|++++|......+..+.++++|+.|++++|.....
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 88888766 4457788888888888887666555 477888888888888765544445678888888888888776665
Q ss_pred cCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCCCCCCCcCcchhh
Q 003104 414 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFF 492 (847)
Q Consensus 414 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~l 492 (847)
.+..+..+++|++|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|++++|....
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------- 262 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--------- 262 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE---------
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc---------
Confidence 55667788888888888888777777776666688888888888887774 56778888888888776322
Q ss_pred cccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEEee
Q 003104 493 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 571 (847)
Q Consensus 493 ~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L 571 (847)
.....+..+++|+.|+|++|.+. +..|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|
T Consensus 263 --------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 263 --------------IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp --------------ECTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred --------------cChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 11112677788888888888765 3556777888888888888888887765 3577888888888
Q ss_pred cCCC
Q 003104 572 EKCR 575 (847)
Q Consensus 572 ~~c~ 575 (847)
++|+
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8875
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.7e-25 Score=254.56 Aligned_cols=273 Identities=19% Similarity=0.274 Sum_probs=195.3
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc-ccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCC
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR 339 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~-~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~ 339 (847)
..++.+.+..+....++ .+..+++|++|++++|.+.+..+ ....+|++|++.++.+..++....+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCC
Confidence 45677877776555554 47889999999999998887553 2346899999999999988874488999999999999
Q ss_pred ccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCcccc
Q 003104 340 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 419 (847)
Q Consensus 340 l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~ 419 (847)
++.++. +..+++|++|++++|.+. .++.++++++|++|++++ . ...++ .++++++|+.|++++|. +..++. +.
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~ 196 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNK-VSDISV-LA 196 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GG
T ss_pred CCCChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCc-CCCChh-hc
Confidence 998875 889999999999998654 456788999999999964 2 33333 38899999999999976 444543 77
Q ss_pred CCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCC
Q 003104 420 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 499 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~ 499 (847)
.+++|++|++++|...+..| ++.+++|++|++++|.++.++ .+..+++|+.|++++|......
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------- 259 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-------------- 259 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--------------
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch--------------
Confidence 88999999999987665544 677899999999999988874 5788999999999998754321
Q ss_pred CCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCC
Q 003104 500 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKC 574 (847)
Q Consensus 500 ~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 574 (847)
.+..+++|+.|++++|.+. .++. +..+++|+.|++++|+++.++. +..+++|+.|++++|
T Consensus 260 -----------~~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 260 -----------PLSGLTKLTELKLGANQIS--NISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp -----------GGTTCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS
T ss_pred -----------hhhcCCCCCEEECCCCccC--cccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC
Confidence 1334444444555444433 1222 4444444444444444444432 444444444444444
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.4e-26 Score=266.75 Aligned_cols=351 Identities=18% Similarity=0.195 Sum_probs=237.3
Q ss_pred CccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccc
Q 003104 272 EMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKG 346 (847)
Q Consensus 272 ~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~ 346 (847)
....++...+ ++|+.|++++|.+.+..+ ....+|++|++.++.+..++. .| .+++|++|++++|.++.++..
T Consensus 16 ~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 16 SFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred ccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 4445554332 789999999998876433 234689999999999988874 45 889999999999999988765
Q ss_pred -cccCcCCCEEEcCCCCCCCC--CCCCCCCCcCcEeeccCcccccccc-ccccCCCCCcEEeccCCCCccccCccccCCC
Q 003104 347 -IKPLKELKFMNLSHSCNLIR--TPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMK 422 (847)
Q Consensus 347 -~~~l~~L~~L~L~~~~~l~~--~p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~ 422 (847)
+..+++|++|+|++|.+... ++.++++++|++|++++|.....+| ..++.+++|++|++++|...+..|..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 89999999999999987642 3458999999999999998777776 5789999999999999988888898899999
Q ss_pred CccEEEecCccCCCcCCcc-ccCCCcccEEEecCccccccC---ccc-cCCCCCCEE-----------------------
Q 003104 423 SLKILCLCGCLKLEKLPQD-LGEVECLEELDVGGTAIRQIP---PSI-VQLVNLKIF----------------------- 474 (847)
Q Consensus 423 ~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~lp---~~i-~~l~~L~~L----------------------- 474 (847)
+|++|++++|.. +.+|.. ++.+++|+.|++++|.++.++ ..+ ..+++|+.|
T Consensus 173 ~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 173 DIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp EEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred cCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 999999998765 344444 356889999999999888642 111 223444444
Q ss_pred -----EeCCCCCCCC--C-------cCcchhhcccccC--------------------------CCCCCCccccCCC--C
Q 003104 475 -----SLHGCKGQPP--K-------ILSSNFFLSLLLP--------------------------NKNSDSMCLSFPR--F 512 (847)
Q Consensus 475 -----~L~~~~~~~~--~-------~~~~~~l~~l~l~--------------------------~~~~~~~~~~l~~--l 512 (847)
++++|..... . ......+..+.+. ....+.+ ..+|. +
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~ 330 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFS 330 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHH
Confidence 4444321100 0 0000011100000 0000111 12333 2
Q ss_pred CCCCCCCEEeccCCCCCCCCCC---cccCCCCCCCEEECcCCCCcccc---hhhhcCCCCCEEeecCCCCCccCCC---C
Q 003104 513 TGLSSLQTLDLSDCNLLEGAIP---SDIGSLFSLEAIDLSGNNFFSLP---SSINQLLKLKILCLEKCRNLKSLPE---L 583 (847)
Q Consensus 513 ~~l~~L~~L~Ls~~~l~~~~lp---~~l~~l~sL~~L~Ls~n~l~~lp---~~i~~l~~L~~L~L~~c~~L~~lp~---l 583 (847)
..+++|+.|++++|.+.+ .+| ..++.+++|++|+|++|+++.+| ..+..+++|+.|++++| .++.+|. .
T Consensus 331 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 408 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQW 408 (549)
T ss_dssp HHCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCC
T ss_pred hcCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcc
Confidence 457788888888887542 332 33667778888888888887665 34677888888888887 4556664 2
Q ss_pred CCCcceeeccCCc----------cccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 584 PPEIVFVGAEDCT----------SLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 584 p~sL~~L~i~~c~----------~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
+++|++|++++|. +|+.+....|.... .+.++++|+++++++|++.
T Consensus 409 ~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-----~~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLK 464 (549)
T ss_dssp CTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS
T ss_pred cccccEEECCCCCcccccchhcCCceEEECCCCChhh-----hcccCChhcEEECCCCccC
Confidence 3667777776653 44444444331111 1357888888888888765
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=275.65 Aligned_cols=330 Identities=19% Similarity=0.180 Sum_probs=214.4
Q ss_pred CCCcEEEEEecCC-CccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCC-CCCC--C-CCCCc
Q 003104 259 GTDAVEAIIVDVP-EMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNS-LPVS--F-RPEKL 330 (847)
Q Consensus 259 ~~~~v~~l~l~~~-~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~-lp~~--~-~~~~L 330 (847)
+...++.+.+..+ ....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.+.. +|.. + .+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4567788888877 45567788899999999999999888765332 34588999999998875 4443 4 78899
Q ss_pred EEEEccCCCccccc--cccccCcCCCEEEcCCCCCCCCCCC-CCCC--CcCcEeeccCccccccccccccCCCC------
Q 003104 331 FKLNLCNSRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPD-FTGV--PNLERLNLEGCTRLLEVHQSVGTLKR------ 399 (847)
Q Consensus 331 ~~L~L~~~~l~~l~--~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l--~~L~~L~L~~c~~l~~lp~~i~~L~~------ 399 (847)
++|++++|.+..++ ..+.++++|++|+|++|.+....+. +..+ ++|+.|++++|......|..++.+.+
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 99999999998663 4688999999999999877665553 5555 77888888887777777766666655
Q ss_pred CcEEeccCCCCccccCccccC--------------------------------------CCCccEEEecCccCCCcCCcc
Q 003104 400 LILLNLKDCRNLVSFPKNVCL--------------------------------------MKSLKILCLCGCLKLEKLPQD 441 (847)
Q Consensus 400 L~~L~L~~c~~l~~lp~~i~~--------------------------------------l~~L~~L~Ls~c~~l~~lp~~ 441 (847)
|+.|++++|......|..+.. .++|+.|++++|...+..|..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 777887777544333322211 256777777777766666777
Q ss_pred ccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCCCC
Q 003104 442 LGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQ 519 (847)
Q Consensus 442 l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~L~ 519 (847)
+..+++|+.|++++|.++.+ |..+..+++|++|++++|......+..+..++.+.......+.+....+ .+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 77777777788777777755 4456777777777777776544434444444444222222222222222 267777788
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch----------------------hhhcCCCCCEEeecCCCCC
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS----------------------SINQLLKLKILCLEKCRNL 577 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~----------------------~i~~l~~L~~L~L~~c~~L 577 (847)
.|+|++|.+.. ++. +++|+.|++++|+++.+|. .+.++++|+.|+|++|+.-
T Consensus 366 ~L~Ls~N~l~~--i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 366 TLDLRDNALTT--IHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp EEEEETCCSCC--CSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred EEECCCCCCCc--ccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 88887777542 221 4444444444444443332 2457788888888887533
Q ss_pred ccC----CCCCCCcceeeccC
Q 003104 578 KSL----PELPPEIVFVGAED 594 (847)
Q Consensus 578 ~~l----p~lp~sL~~L~i~~ 594 (847)
... +.-.++|+.|++++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEES
T ss_pred ccccccccccCCccccccCCC
Confidence 211 11225555555543
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.2e-25 Score=261.63 Aligned_cols=371 Identities=18% Similarity=0.106 Sum_probs=230.1
Q ss_pred EEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCC-CCC-CCCCcEEEEccCC
Q 003104 264 EAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLP-VSF-RPEKLFKLNLCNS 338 (847)
Q Consensus 264 ~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp-~~~-~~~~L~~L~L~~~ 338 (847)
+.+.+..+....++...+ ++|+.|++++|.+.+..+. ...+|++|++.+|.+..++ ..| .+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 556666665555554332 7888888888888775532 2457888888888888774 445 7788888888888
Q ss_pred CccccccccccCcCCCEEEcCCCCCCCC-CC-CCCCCCcCcEeeccCccccccccccccCCCCC--cEEeccCCCC--cc
Q 003104 339 RIKYLWKGIKPLKELKFMNLSHSCNLIR-TP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL--ILLNLKDCRN--LV 412 (847)
Q Consensus 339 ~l~~l~~~~~~l~~L~~L~L~~~~~l~~-~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L--~~L~L~~c~~--l~ 412 (847)
.++.+|.. .+++|++|+|++|.+... .| .|+++++|++|++++|.... ..+..+++| +.|++++|.. ..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccc
Confidence 88888876 788888888888876653 23 47888888888888876543 244555555 8888888766 44
Q ss_pred ccCccccC--------------------------CCCccEEEecCccCC----C--------------------------
Q 003104 413 SFPKNVCL--------------------------MKSLKILCLCGCLKL----E-------------------------- 436 (847)
Q Consensus 413 ~lp~~i~~--------------------------l~~L~~L~Ls~c~~l----~-------------------------- 436 (847)
..|..+.. +++|+.|++++|... .
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 44433332 233334433332100 0
Q ss_pred --cCCccccCCCcccEEEecCcccc-ccCccc-----cCC--------------------------CCCCEEEeCCCCCC
Q 003104 437 --KLPQDLGEVECLEELDVGGTAIR-QIPPSI-----VQL--------------------------VNLKIFSLHGCKGQ 482 (847)
Q Consensus 437 --~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i-----~~l--------------------------~~L~~L~L~~~~~~ 482 (847)
.++..+ ...+|++|++++|.++ .+|..+ ..+ .+|+.|++++|...
T Consensus 266 ~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 000000 0113444444444444 444433 111 34556666555432
Q ss_pred CCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCC-CCCCcccCCCCCCCEEECcCCCCcc-cchh
Q 003104 483 PPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLE-GAIPSDIGSLFSLEAIDLSGNNFFS-LPSS 559 (847)
Q Consensus 483 ~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~-~~lp~~l~~l~sL~~L~Ls~n~l~~-lp~~ 559 (847)
.... ...+..+.......+.+....|. +..+++|+.|++++|.+.. ..+|..++.+++|++|++++|.++. +|..
T Consensus 345 ~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 345 HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 2110 01222232111112222233444 8899999999999999753 1234678999999999999999996 8865
Q ss_pred -hhcCCCCCEEeecCCCCCccCCC-CCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHHHHH
Q 003104 560 -INQLLKLKILCLEKCRNLKSLPE-LPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTL 637 (847)
Q Consensus 560 -i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~~~~ 637 (847)
+..+++|+.|++++|+....+|. +|++|+.|+++++ .++.++.. +.++++|+.+++++|++. .+
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~------------~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD------------VTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT------------TTSSCCCSEEECCSSCCC-CC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh------------hcCCCCCCEEECCCCCCC-CC
Confidence 78899999999999986666554 4578999999887 66655432 347889999999999876 23
Q ss_pred HHHHhhcCCCCCCceEEecCCCCCC
Q 003104 638 MKQWLLEVPNCSSQFHIFLPGNEIP 662 (847)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~lpg~~iP 662 (847)
+...+ ........+.+-|+.+-
T Consensus 489 ~~~~~---~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 489 PDGVF---DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTST---TTCTTCCCEECCSCCBC
T ss_pred CHHHH---hcCCCCCEEEecCCCcC
Confidence 32111 11122334566777543
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3e-25 Score=248.16 Aligned_cols=309 Identities=17% Similarity=0.160 Sum_probs=217.8
Q ss_pred CCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCcccccc-ccccCcCCCEE
Q 003104 283 TMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFM 356 (847)
Q Consensus 283 ~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L 356 (847)
.+++++.|+++++.+..... ...++|++|++.++.+..++. .+ .+++|++|++++|.++.++. .+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35778888888776655332 234678888888888777765 44 77888888888888887754 47888888888
Q ss_pred EcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCC
Q 003104 357 NLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL 435 (847)
Q Consensus 357 ~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 435 (847)
+|++|.+...++. |.++++|++|++++|......+..++.+++|++|++++|.... ++ +..+++|+.|++++|...
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeeccccccc
Confidence 8888876654444 5788888888888887666666678888888888888876433 33 456788888888887543
Q ss_pred CcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCC
Q 003104 436 EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGL 515 (847)
Q Consensus 436 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l 515 (847)
+ +...++|++|++++|.++.+|... .++|+.|++++|.... .+.+..+
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~-------------------------~~~l~~l 247 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-------------------------TAWLLNY 247 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC-------------------------CGGGGGC
T ss_pred c-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc-------------------------cHHHcCC
Confidence 2 234457888888888888776543 5788888888876432 2346677
Q ss_pred CCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCC-C--CCcceeec
Q 003104 516 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPEL-P--PEIVFVGA 592 (847)
Q Consensus 516 ~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-p--~sL~~L~i 592 (847)
++|++|+|++|.+. +..|..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+ ++.+|.- . ++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEEC
Confidence 88888888888864 355778888888888888888888888777888888888888884 4445431 1 44444444
Q ss_pred cCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHHHHHHHHHhh
Q 003104 593 EDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLL 643 (847)
Q Consensus 593 ~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~~~~~~~~~~ 643 (847)
+++. ++. +.+..+++|+.+++++|++...-...+.+
T Consensus 326 ~~N~-i~~--------------~~~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 326 DHNS-IVT--------------LKLSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp CSSC-CCC--------------CCCCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCc-cce--------------eCchhhccCCEEEcCCCCccchhHHHHHH
Confidence 4432 221 12567888888899988876544444443
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9.3e-25 Score=244.10 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=242.4
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCCC-C-CCCCcEEEE
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLN 334 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~ 334 (847)
...++.+.+..+....++...|.++++|++|+++++.+.+..+ ....+|++|++.++.+..+|.. + .+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3567788888888888898899999999999999998876433 3456899999999999998765 4 899999999
Q ss_pred ccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCcc
Q 003104 335 LCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 412 (847)
Q Consensus 335 L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~ 412 (847)
+++|.++.+|.. +..+++|++|++++|.+....|. +.++++|++|++++|.... + .++.+++|+.|++++|...
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~l~- 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS- 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSCCS-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccccc-
Confidence 999999999987 58999999999999988776665 8999999999999987543 3 4678899999999997533
Q ss_pred ccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhh
Q 003104 413 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFF 492 (847)
Q Consensus 413 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l 492 (847)
. +...++|++|++++|.... +|.. ..++|+.|++++|.++.. ..+..+++|+.|++++|....
T Consensus 200 ~----~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~--------- 262 (390)
T 3o6n_A 200 T----LAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK--------- 262 (390)
T ss_dssp E----EECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE---------
T ss_pred c----cCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC---------
Confidence 2 3355789999999987544 3432 357899999999999986 578999999999999987432
Q ss_pred cccccCCCCCCCccccCC-CCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEee
Q 003104 493 LSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCL 571 (847)
Q Consensus 493 ~~l~l~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 571 (847)
..| .+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|+++.+|..+..+++|+.|+|
T Consensus 263 ---------------~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 263 ---------------IMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---------------EESGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred ---------------cChhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence 123 2788999999999999976 5788888899999999999999999999999999999999
Q ss_pred cCCCCCccCC-CCCCCcceeeccC
Q 003104 572 EKCRNLKSLP-ELPPEIVFVGAED 594 (847)
Q Consensus 572 ~~c~~L~~lp-~lp~sL~~L~i~~ 594 (847)
++|+ ++.+| ...++|+.|++++
T Consensus 326 ~~N~-i~~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 326 DHNS-IVTLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp CSSC-CCCCCCCTTCCCSEEECCS
T ss_pred CCCc-cceeCchhhccCCEEEcCC
Confidence 9996 44443 1224455555544
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.3e-24 Score=261.08 Aligned_cols=312 Identities=22% Similarity=0.219 Sum_probs=141.2
Q ss_pred cEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEcc
Q 003104 262 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLC 336 (847)
Q Consensus 262 ~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~ 336 (847)
.++.+.+..+....++..+|.++++|++|++++|.+.+..+. ...+|++|++.++.+..++. .+ .+++|++|+++
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 445555555544455555555555555555555555443321 12355555555555544432 22 45555555555
Q ss_pred CCCccccccc-c--ccCcCCCEEEcCCCCCCCCCCC--------------------------------------------
Q 003104 337 NSRIKYLWKG-I--KPLKELKFMNLSHSCNLIRTPD-------------------------------------------- 369 (847)
Q Consensus 337 ~~~l~~l~~~-~--~~l~~L~~L~L~~~~~l~~~p~-------------------------------------------- 369 (847)
+|.++.++.. + ..+++|++|++++|.+....|.
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 5555544322 1 2334555555555544333322
Q ss_pred --------CCCCC--cCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCC---
Q 003104 370 --------FTGVP--NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--- 436 (847)
Q Consensus 370 --------~~~l~--~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--- 436 (847)
+.+++ +|++|++++|......|..++.+++|++|++++|...+..|..+..+++|++|++++|...+
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 22222 25555555444433334445555555555555544444444445555555555554433221
Q ss_pred --cCCc----cccCCCcccEEEecCccccccC-ccccCCCCCCEEEeCCCCCCCCC-c-Ccchhh--cccccCCCCCCCc
Q 003104 437 --KLPQ----DLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPK-I-LSSNFF--LSLLLPNKNSDSM 505 (847)
Q Consensus 437 --~lp~----~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~-~-~~~~~l--~~l~l~~~~~~~~ 505 (847)
.+|. .+..+++|++|++++|.++.++ ..+..+++|++|++++|...... + ..+..+ ..+.......+.+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 2222 3455666666666666666443 34566666666666665421100 0 000000 1111000011111
Q ss_pred cccCCC-CCCCCCCCEEeccCCCCCCCCCC-cccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEEeecCC
Q 003104 506 CLSFPR-FTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKC 574 (847)
Q Consensus 506 ~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 574 (847)
....|. +..+++|+.|++++|.+.. .+| ..+..+++|++|++++|+++.+ |..+..+++|+.|++++|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEE-ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCcc-ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 111222 5566666666666666432 233 3455555555555555554422 223333344444444333
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.7e-25 Score=259.12 Aligned_cols=311 Identities=17% Similarity=0.160 Sum_probs=222.8
Q ss_pred CCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccc-cccCcCCCEE
Q 003104 283 TMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFM 356 (847)
Q Consensus 283 ~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L 356 (847)
.+.+++.|+++++.+...++. .+.+|++|++.++.+..+|. .| .+++|++|+|++|.+..++.. +..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356788888888776654332 24678888888888877765 44 788888888888888877654 6888888888
Q ss_pred EcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCC
Q 003104 357 NLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL 435 (847)
Q Consensus 357 ~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 435 (847)
+|++|.+...++. |+++++|++|+|++|......|..++.+++|++|++++|... .++ +..+++|+.|++++|...
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccc
Confidence 8888876655555 688888888888888776666677888888888888887643 333 456788888888887543
Q ss_pred CcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCC
Q 003104 436 EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGL 515 (847)
Q Consensus 436 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l 515 (847)
+ +....+|+.|++++|.++.+|..+ .++|+.|++++|.... .+.+..+
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~-------------------------~~~l~~l 253 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-------------------------TAWLLNY 253 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC-------------------------CGGGGGC
T ss_pred c-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC-------------------------ChhhccC
Confidence 2 334567888888888888776554 3688888888886432 2336778
Q ss_pred CCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCC
Q 003104 516 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDC 595 (847)
Q Consensus 516 ~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c 595 (847)
++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ +..+|.. +..+
T Consensus 254 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~--------~~~l 323 (597)
T 3oja_B 254 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN--------QPQF 323 (597)
T ss_dssp TTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG--------HHHH
T ss_pred CCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc--------cccC
Confidence 88999999988865 356788888899999999999988888888888899999999885 4445431 1233
Q ss_pred ccccccccccccCCCCCceEEEccCCCcchhhhhhhhHHHHHHHHHh
Q 003104 596 TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWL 642 (847)
Q Consensus 596 ~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~~~~~~~~~ 642 (847)
++|+.|....|.. ..+.+..+++|+.+++++|.+.......++
T Consensus 324 ~~L~~L~L~~N~l----~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 324 DRLENLYLDHNSI----VTLKLSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp TTCSEEECCSSCC----CCCCCCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCCCEEECCCCCC----CCcChhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 3444443333211 112266788899999999887654443333
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-24 Score=254.23 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=242.8
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc---ccCCCcceEEecCCCCCCCCCCC--CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L 335 (847)
..++.+.+..+....+++..|.++++|++|++++|.+.+..+ ..+.+|++|++.+|.+..+|... .+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 456677787777788888999999999999999999886543 33568999999999999988754 8999999999
Q ss_pred cCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccc
Q 003104 336 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 413 (847)
Q Consensus 336 ~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~ 413 (847)
++|.++.+|.. +.++++|++|+|++|.+...+|. ++++++|++|++++|.... + .++.+++|+.|++++|... .
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~-~ 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS-T 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCS-E
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCccc-c
Confidence 99999999887 58999999999999988877775 9999999999999987543 3 3677899999999997533 2
Q ss_pred cCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhc
Q 003104 414 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFL 493 (847)
Q Consensus 414 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 493 (847)
+...++|+.|++++|.... +|..+ .++|+.|++++|.++.. ..+..+++|+.|++++|....
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~---------- 268 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK---------- 268 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE----------
T ss_pred ----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC----------
Confidence 3456789999999987543 33322 36899999999999875 678999999999999987432
Q ss_pred ccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeec
Q 003104 494 SLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLE 572 (847)
Q Consensus 494 ~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 572 (847)
..|. +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|+
T Consensus 269 --------------~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 269 --------------IMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp --------------EESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred --------------CCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECC
Confidence 1233 788999999999999976 57888888999999999999999999999999999999999
Q ss_pred CCCCCccCC-CCCCCcceeeccCC
Q 003104 573 KCRNLKSLP-ELPPEIVFVGAEDC 595 (847)
Q Consensus 573 ~c~~L~~lp-~lp~sL~~L~i~~c 595 (847)
+|+. ..+| ...++|+.|+++++
T Consensus 333 ~N~l-~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 333 HNSI-VTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp SSCC-CCCCCCTTCCCSEEECCSS
T ss_pred CCCC-CCcChhhcCCCCEEEeeCC
Confidence 9963 3343 22255566655543
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.2e-24 Score=231.74 Aligned_cols=244 Identities=18% Similarity=0.227 Sum_probs=147.9
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCc
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGC 384 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c 384 (847)
.++.+++.++.+..+|..+. ++|++|++++|+++.++. .+.++++|++|+|++|.+....| .+.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45555555555666665442 466666666666666654 46666666666666666555544 3666666666666665
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCC--cCCccccCCCcccEEEecCccccccC
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGTAIRQIP 462 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp 462 (847)
. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++++|.++.+|
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred c-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 4 335555443 566677776665444444445666677777776665532 44555666667777777777766666
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 542 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~s 542 (847)
..+. ++|++|++++|.... .....+..+++|+.|+|++|.+.. ..+..+..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 241 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITK-----------------------VDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPH 241 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCE-----------------------ECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTT
T ss_pred cccc--ccCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCC
Confidence 5543 667777776665321 001125566677777777776542 33445666677
Q ss_pred CCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 543 LEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 543 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
|++|+|++|.++.+|.++..+++|+.|++++|+ ++.+|
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 777777777777777667777777777777664 44443
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.6e-24 Score=236.08 Aligned_cols=220 Identities=26% Similarity=0.386 Sum_probs=171.7
Q ss_pred CCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 327 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 327 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
..+++.|++++|.++.+|..+.++++|++|+|++|.+. .+| .++++++|++|+|++|... .+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34667777777777777777777778888888777666 444 4777778888888777544 77777888888888888
Q ss_pred cCCCCccccCccccC---------CCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEe
Q 003104 406 KDCRNLVSFPKNVCL---------MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSL 476 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~---------l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 476 (847)
++|...+.+|..++. +++|++|++++|... .+|..++.+++|++|++++|.++.+|..++.+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 887777777776644 888889988887654 7888888888899999999888888888888888888888
Q ss_pred CCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-
Q 003104 477 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF- 554 (847)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~- 554 (847)
++|.... .+|. +..+++|+.|+|++|++. +.+|..++.+++|++|+|++|++.
T Consensus 237 s~n~~~~------------------------~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 237 RGCTALR------------------------NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TTCTTCC------------------------BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCcchh------------------------hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchh
Confidence 8876442 2343 777888888888888865 478888888888888888888766
Q ss_pred ccchhhhcCCCCCEEeecCC
Q 003104 555 SLPSSINQLLKLKILCLEKC 574 (847)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~c 574 (847)
.+|.+++++++|+.+++..+
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGG
T ss_pred hccHHHhhccCceEEeCCHH
Confidence 78888888888888888765
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=4.6e-24 Score=233.00 Aligned_cols=284 Identities=16% Similarity=0.169 Sum_probs=196.6
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCc
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 384 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c 384 (847)
.++.+++.++.++.+|..+ +++|++|++++|.++.++ ..+.++++|++|+|++|.+....|. +.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4666666677777777665 357888888888887774 3577888888888888876655553 777888888888876
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCC--CcCCccccCCCcccEEEecCccccccC
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL--EKLPQDLGEVECLEELDVGGTAIRQIP 462 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~lp 462 (847)
. +..+|..+. ++|++|++++|......+..+..+++|++|++++|... +..|..+..+ +|+.|++++|.++.+|
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred c-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 5 346666655 78888888887654433445777888888888887764 3556667776 7888888888888887
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 542 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~s 542 (847)
..+. ++|+.|++++|.... .....+..+++|+.|+|++|.+.. ..+..+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~-----------------------~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 242 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQA-----------------------IELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPT 242 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCC-----------------------CCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCC
Confidence 7654 688888888876432 111237778888888888888653 44557888888
Q ss_pred CCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC-----C-----CCCcceeeccCCccccccccccccCCCCC
Q 003104 543 LEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE-----L-----PPEIVFVGAEDCTSLETISAFAKLSRSPN 612 (847)
Q Consensus 543 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----l-----p~sL~~L~i~~c~~L~~l~~~~~~~~~~~ 612 (847)
|++|+|++|+++.+|.++..+++|+.|++++|+ ++.+|. . .++++.|++.+++- .....
T Consensus 243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~--------- 311 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEV--------- 311 (332)
T ss_dssp CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS-CGGGS---------
T ss_pred CCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcc-ccccc---------
Confidence 999999988888888888888889999998884 555542 1 23455555555442 11111
Q ss_pred ceEEEccCCCcchhhhhhhh
Q 003104 613 IALNFLNCFKLVEDQVSKDN 632 (847)
Q Consensus 613 ~~~~~~nc~~L~~l~~~~n~ 632 (847)
....|.+|++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 12236778888888877663
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3.1e-24 Score=244.16 Aligned_cols=280 Identities=18% Similarity=0.201 Sum_probs=161.7
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccccCC----------------CcceEEecCCCCCCCCCC
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN----------------NLRYLKWHEYPFNSLPVS 324 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~----------------~L~~L~~~~~~~~~lp~~ 324 (847)
..++.+.+..+....+ +.++.++++|++|+++++.+.+.++.... .++.|++.++.+..+|..
T Consensus 11 ~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4566666666655433 45678888888888888877765554433 257788888888887763
Q ss_pred CCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEe
Q 003104 325 FRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 404 (847)
Q Consensus 325 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 404 (847)
+++|++|++++|.++.+|.. +++|++|++++|.+.. +|.+ .++|++|++++|... .+| +++++++|++|+
T Consensus 90 --~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159 (454)
T ss_dssp --CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred --cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEE
Confidence 46888888888888887753 3678888888875443 3332 267888888887644 466 588888888888
Q ss_pred ccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCC
Q 003104 405 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPP 484 (847)
Q Consensus 405 L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 484 (847)
+++|. +..+|.. ..+|++|++++|...+ +| .++.+++|+.|++++|.++.+|... ++|+.|++++|....
T Consensus 160 l~~N~-l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~- 229 (454)
T 1jl5_A 160 VDNNS-LKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEE- 229 (454)
T ss_dssp CCSSC-CSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSS-
T ss_pred CCCCc-CcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCc-
Confidence 88875 3446653 3578888888876544 56 4778888888888888887776543 578888888775432
Q ss_pred CcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCC
Q 003104 485 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL 564 (847)
Q Consensus 485 ~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~ 564 (847)
+|.+..+++|++|++++|.+. .+|.. +++|+.|++++|.++.+|.. ++
T Consensus 230 ------------------------lp~~~~l~~L~~L~l~~N~l~--~l~~~---~~~L~~L~l~~N~l~~l~~~---~~ 277 (454)
T 1jl5_A 230 ------------------------LPELQNLPFLTTIYADNNLLK--TLPDL---PPSLEALNVRDNYLTDLPEL---PQ 277 (454)
T ss_dssp ------------------------CCCCTTCTTCCEEECCSSCCS--SCCSC---CTTCCEEECCSSCCSCCCCC---CT
T ss_pred ------------------------ccccCCCCCCCEEECCCCcCC--ccccc---ccccCEEECCCCcccccCcc---cC
Confidence 233444455555555555433 23321 24455555555555444432 24
Q ss_pred CCCEEeecCCCCCccCCCCCCCcceeeccC
Q 003104 565 KLKILCLEKCRNLKSLPELPPEIVFVGAED 594 (847)
Q Consensus 565 ~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~ 594 (847)
+|+.|++++|+ ++.+|.+|++|+.|++++
T Consensus 278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSELPPNLYYLNASS 306 (454)
T ss_dssp TCCEEECCSSC-CSEESCCCTTCCEEECCS
T ss_pred cCCEEECcCCc-cCcccCcCCcCCEEECcC
Confidence 44555555442 333444444444444443
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3e-23 Score=235.99 Aligned_cols=330 Identities=17% Similarity=0.160 Sum_probs=192.9
Q ss_pred cEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcc
Q 003104 262 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 341 (847)
Q Consensus 262 ~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~ 341 (847)
.++.+.+..+....++. -.++|+.|++++|.+.+ ++..+.+|++|++.++.+..+|.. +++|++|++++|.++
T Consensus 72 ~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS
T ss_pred CCCEEEecCCccccCCC----CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC
Confidence 34556666654444432 23678888888888776 455567888888888887777653 267888888888888
Q ss_pred ccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCC
Q 003104 342 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 421 (847)
Q Consensus 342 ~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l 421 (847)
.+| .+..+++|++|++++|++.. +|.. .++|++|++++|... .+| +++++++|++|++++|... .+|.. .
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~ 214 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDL---P 214 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCCC---C
T ss_pred CCc-ccCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCC-cCCCC---c
Confidence 877 57888888888888876553 4442 357888888887543 355 5788888888888876533 45542 3
Q ss_pred CCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCC
Q 003104 422 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 501 (847)
Q Consensus 422 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~ 501 (847)
++|++|++++|... .+|. ++.+++|++|++++|.++.+|.. +++|+.|++++|.... .+.....+..+.+....
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENI 288 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcccCcCCEEECcCCc
Confidence 57888888887544 6664 77788888888888888777653 3677888887776433 12112222222222111
Q ss_pred CCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 502 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 502 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
+ ..+|.+ .++|+.|++++|.+. .++. ..++|++|++++|+++.+|.. +++|+.|++++| .++.+|
T Consensus 289 ---l-~~l~~~--~~~L~~L~l~~N~l~--~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 289 ---F-SGLSEL--PPNLYYLNASSNEIR--SLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp ---C-SEESCC--CTTCCEEECCSSCCS--EECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred ---c-CcccCc--CCcCCEEECcCCcCC--cccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCC-cccccc
Confidence 1 111111 256777777777654 2321 124777777777777777654 467777777777 455677
Q ss_pred CCCCCcceeeccCCccccccccccccCCCCCceEE--------EccCCCcchhhhhhhhHH
Q 003104 582 ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALN--------FLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 582 ~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~--------~~nc~~L~~l~~~~n~~~ 634 (847)
..+++|++|+++++. ++.++.... ....+. ...+++|+.+++++|++.
T Consensus 354 ~~l~~L~~L~L~~N~-l~~l~~ip~----~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 354 ELPQNLKQLHVEYNP-LREFPDIPE----SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCCTTCCEEECCSSC-CSSCCCCCT----TCCEEECCC-----------------------
T ss_pred chhhhccEEECCCCC-CCcCCCChH----HHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 766777777776542 333211000 000110 112378888898888776
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=239.93 Aligned_cols=281 Identities=20% Similarity=0.108 Sum_probs=233.8
Q ss_pred CCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc
Q 003104 305 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 384 (847)
Q Consensus 305 ~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c 384 (847)
..+|++|++.++.+..+|....+++|++|++++|.++.+| +..+++|++|++++|.+... + ++++++|++|++++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCC
Confidence 4689999999999999985448999999999999999986 88999999999999976653 4 899999999999998
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
... .+| ++.+++|++|++++|.... ++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.++.+|
T Consensus 117 ~l~-~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 117 KLT-KLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp CCS-CCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred cCC-eec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence 654 454 8999999999999987544 54 789999999999999877777 4788999999999999999987
Q ss_pred ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCC
Q 003104 465 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 544 (847)
Q Consensus 465 i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~ 544 (847)
++.+++|+.|++++|.... + .+..+++|+.|++++|++.. +| ++.+++|+
T Consensus 187 l~~l~~L~~L~l~~N~l~~-------------------------~-~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~ 236 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITK-------------------------L-DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-------------------------C-CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCS
T ss_pred cccCCCCCEEECcCCcCCe-------------------------e-ccccCCCCCEEECcCCcccc--cC--ccccCCCC
Confidence 8899999999999987432 1 26788999999999999763 77 88999999
Q ss_pred EEECcCCCCcccchhhhcCCCC----------CEEeecCCCCCccCCCC-CCCcceeeccCCccccccccccccCCCCCc
Q 003104 545 AIDLSGNNFFSLPSSINQLLKL----------KILCLEKCRNLKSLPEL-PPEIVFVGAEDCTSLETISAFAKLSRSPNI 613 (847)
Q Consensus 545 ~L~Ls~n~l~~lp~~i~~l~~L----------~~L~L~~c~~L~~lp~l-p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~ 613 (847)
.|++++|+++.+| ++.+++| +.|++++|+.++.+|.- .++|+.|++++|+.++.++... ....
T Consensus 237 ~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~----~~L~ 310 (457)
T 3bz5_A 237 YFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA----AGIT 310 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT----CCCS
T ss_pred EEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC----Ccce
Confidence 9999999999876 3455555 55566666666666532 2788999999998888887632 3345
Q ss_pred eEEEccCCCcchhhhhhhhHHH
Q 003104 614 ALNFLNCFKLVEDQVSKDNLAV 635 (847)
Q Consensus 614 ~~~~~nc~~L~~l~~~~n~~~~ 635 (847)
.+.+.+|++|+.++++.|++.+
T Consensus 311 ~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSC
T ss_pred EechhhcccCCEEECCCCcccc
Confidence 5678999999999999998763
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2e-25 Score=241.63 Aligned_cols=227 Identities=17% Similarity=0.245 Sum_probs=132.3
Q ss_pred CcEEEEccCCCcc---ccccccccCcCCCEEEcCC-CCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEE
Q 003104 329 KLFKLNLCNSRIK---YLWKGIKPLKELKFMNLSH-SCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILL 403 (847)
Q Consensus 329 ~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~L~~-~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 403 (847)
+++.|+++++.+. .+|..+.++++|++|+|++ |.....+|. ++++++|++|++++|.....+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555555 3555566666666666663 444444443 5666666666666665555566666666666666
Q ss_pred eccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCC-cccEEEecCcccc-ccCccccCCCCCCEEEeCCCCC
Q 003104 404 NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE-CLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 404 ~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~ 481 (847)
++++|...+.+|..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666555555666566666666666666655555666666665 6666666666666 5555565555 66666666542
Q ss_pred CCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchh
Q 003104 482 QPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSS 559 (847)
Q Consensus 482 ~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~ 559 (847)
.. ..|. +..+++|+.|+|++|.+. +.+| .+..+++|++|+|++|+++ .+|.+
T Consensus 210 ~~------------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 210 EG------------------------DASVLFGSDKNTQKIHLAKNSLA-FDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EE------------------------CCGGGCCTTSCCSEEECCSSEEC-CBGG-GCCCCTTCCEEECCSSCCEECCCGG
T ss_pred cC------------------------cCCHHHhcCCCCCEEECCCCcee-eecC-cccccCCCCEEECcCCcccCcCChH
Confidence 11 1122 455666666666666643 2233 2555666666666666666 56666
Q ss_pred hhcCCCCCEEeecCCCCCccCCC
Q 003104 560 INQLLKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 560 i~~l~~L~~L~L~~c~~L~~lp~ 582 (847)
+..+++|+.|+|++|+..+.+|.
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCC
T ss_pred HhcCcCCCEEECcCCcccccCCC
Confidence 66666666666666654445554
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.3e-23 Score=240.65 Aligned_cols=321 Identities=18% Similarity=0.243 Sum_probs=256.6
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCcc-ccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCC
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS 338 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~-~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~ 338 (847)
...++.+.+..+....+.+ |.++++|+.|+++++.+.+..+ ....+|++|++.++.+..+|....+++|++|++++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCC
Confidence 4678889998886666654 9999999999999999887654 334689999999999999987558999999999999
Q ss_pred CccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccc
Q 003104 339 RIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 418 (847)
Q Consensus 339 ~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i 418 (847)
.+..++ .+..+++|++|+++++ ....+.+.++++|++|++++|.. ..+ ..+..+++|++|++++|......| +
T Consensus 145 ~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 145 TISDIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKV-SDI-SVLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp EECCCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred ccCCCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcC-CCC-hhhccCCCCCEEEecCCccccccc--c
Confidence 999886 4889999999999743 34455699999999999999874 344 358999999999999987655444 6
Q ss_pred cCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccC
Q 003104 419 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLP 498 (847)
Q Consensus 419 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~ 498 (847)
+.+++|++|++++|...+ + ..+..+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 218 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------- 279 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN--------------- 279 (466)
T ss_dssp GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC---------------
T ss_pred cccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc---------------
Confidence 789999999999987554 3 357889999999999999998776 8899999999999987432
Q ss_pred CCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCc
Q 003104 499 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLK 578 (847)
Q Consensus 499 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 578 (847)
++.+..+++|+.|++++|.+.+ ++. ++.+++|+.|+|++|+++.++. +..+++|+.|++++|+ ++
T Consensus 280 ----------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~ 344 (466)
T 1o6v_A 280 ----------ISPLAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VS 344 (466)
T ss_dssp ----------CGGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred ----------cccccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cC
Confidence 3336788999999999999753 443 7889999999999999997775 8899999999999994 55
Q ss_pred cCCCCCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 579 SLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 579 ~lp~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
.++.+ .+|++|+.+....|.. ....+ +.+|++|+.+++++|.++
T Consensus 345 ~~~~l---------~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 345 DVSSL---------ANLTNINWLSAGHNQI-SDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCGGG---------TTCTTCCEEECCSSCC-CBCGG--GTTCTTCCEEECCCEEEE
T ss_pred Cchhh---------ccCCCCCEEeCCCCcc-Cccch--hhcCCCCCEEeccCCccc
Confidence 55432 3444444444443311 11122 688999999999999887
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=9.5e-25 Score=236.28 Aligned_cols=249 Identities=16% Similarity=0.210 Sum_probs=222.2
Q ss_pred CCcceEEecCCCCC---CCCCCC-CCCCcEEEEccC-CCcc-ccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcE
Q 003104 306 NNLRYLKWHEYPFN---SLPVSF-RPEKLFKLNLCN-SRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLER 378 (847)
Q Consensus 306 ~~L~~L~~~~~~~~---~lp~~~-~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~ 378 (847)
..++.|++.++.+. .+|..+ .+++|++|++++ |.+. .+|..+.++++|++|+|++|.+...+|. +.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999997 588887 899999999995 8887 7899999999999999999988867775 999999999
Q ss_pred eeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCC-CccEEEecCccCCCcCCccccCCCcccEEEecCcc
Q 003104 379 LNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMK-SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 457 (847)
Q Consensus 379 L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 457 (847)
|++++|.....+|..++.+++|++|++++|...+.+|..+..++ +|++|++++|...+..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999988889999999999999999999988779999999998 999999999998889999999987 9999999999
Q ss_pred cc-ccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcc
Q 003104 458 IR-QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSD 536 (847)
Q Consensus 458 i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~ 536 (847)
++ ..|..+..+++|+.|++++|.... ..|.+..+++|++|+|++|.+. +.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 263 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF------------------------DLGKVGLSKNLNGLDLRNNRIY-GTLPQG 263 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC------------------------BGGGCCCCTTCCEEECCSSCCE-ECCCGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee------------------------ecCcccccCCCCEEECcCCccc-CcCChH
Confidence 99 567778999999999999986432 2344678899999999999975 479999
Q ss_pred cCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 537 IGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 537 l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
+..+++|++|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999999999999 77765 899999999999998766544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.2e-23 Score=225.15 Aligned_cols=263 Identities=18% Similarity=0.177 Sum_probs=219.1
Q ss_pred CCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCC
Q 003104 284 MSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSH 360 (847)
Q Consensus 284 ~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~ 360 (847)
..+++.++++++.+...+...+..+++|++.++.+..++. .+ .+++|++|++++|.++.+ |..+..+++|++|+|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3478999999988887666677899999999999999987 45 899999999999999988 77899999999999999
Q ss_pred CCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCcc--ccCccccCCCCccEEEecCccCCCcC
Q 003104 361 SCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV--SFPKNVCLMKSLKILCLCGCLKLEKL 438 (847)
Q Consensus 361 ~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~l 438 (847)
|.+...+..+. ++|++|++++|......+..+.++++|+.|++++|.... ..+..+..+++|++|++++|... .+
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cC
Confidence 97664333343 899999999998776666778999999999999987643 56677889999999999998754 56
Q ss_pred CccccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCC
Q 003104 439 PQDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 517 (847)
Q Consensus 439 p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~ 517 (847)
|..+. ++|++|++++|.++.+ |..+..+++|+.|++++|.... .....+..+++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~ 241 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------------------VDNGSLANTPH 241 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------------------ECTTTGGGSTT
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------------------eChhhccCCCC
Confidence 66554 7899999999999976 6788999999999999987432 11113778899
Q ss_pred CCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhh-h------cCCCCCEEeecCCCC
Q 003104 518 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI-N------QLLKLKILCLEKCRN 576 (847)
Q Consensus 518 L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i-~------~l~~L~~L~L~~c~~ 576 (847)
|++|+|++|.+. .+|..+..+++|++|+|++|+++.+|... . ..++|+.|++++|+.
T Consensus 242 L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 242 LRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 999999999976 79999999999999999999999887532 2 347888899988863
No 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=2.9e-25 Score=262.07 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=156.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH--HHhccCCc-eeEEEecccccccCChHHHHHHHHHHH--hc-C
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEV--LM-E 75 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~--~i~~~F~~-~~~v~~~~~~s~~~~l~~l~~~il~~~--l~-~ 75 (847)
++|.++|... +++++|+|||||||||||||+++|+ +++.+|+. ++|+. ++...+...+.+.+...+ .. .
T Consensus 138 eeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 138 LKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcc
Confidence 5677777643 4589999999999999999999997 68999997 88988 555556666666665532 11 0
Q ss_pred --CCc-----cccchhhhHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHhcCCCee-----------------------
Q 003104 76 --RDL-----IIWDVHKGINLIRWRL---CRKRVLVILDDVDQLEQLQALVGNHDWF----------------------- 122 (847)
Q Consensus 76 --~~~-----~~~~~~~~~~~i~~~L---~~kk~LlVLDDV~~~~~l~~L~~~~~w~----------------------- 122 (847)
... ...+.+.....+++.| ++||+||||||||+.++|+.+.....-.
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~ 292 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEEC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCc
Confidence 000 1123344566777766 6899999999999999987764211000
Q ss_pred ---------------------------------------EecccccCC--CHHHHHHHHHHHhcCCccccceeeeeeccC
Q 003104 123 ---------------------------------------VLGSFLCGR--SVEEWKSALNRLQEAPNEKVLKVLRISYDG 161 (847)
Q Consensus 123 ---------------------------------------~lgs~L~~~--~~~~W~~~l~~L~~~~~~~i~~~L~~SYd~ 161 (847)
++|+.|+++ +.++|+.. ....|..+|++||+.
T Consensus 293 d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~ 365 (1221)
T 1vt4_I 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNV 365 (1221)
T ss_dssp SSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHh
Confidence 344445443 45555542 245688899999999
Q ss_pred CChhh-HHHhheeeeccCCCCH--HHHHHHHhhCCC-ChhhhHHHHhhcCceeEe--CCeEeehHHHHHHH
Q 003104 162 LDRRD-KEIFLDIACFFKGKDE--DRVRKKLDSCGF-NSDIGIRELLDKSLITIV--NNKLWMHDLLQEMG 226 (847)
Q Consensus 162 L~~~~-k~~FL~~a~F~~~~~~--~~l~~~~~~~g~-~~~~~l~~L~~k~Li~~~--~~~~~mHdll~~~~ 226 (847)
||+++ |.||+|+|+||+++.+ +.+..+|+++|. ..+.++++|+++||++.. .++++|||++++++
T Consensus 366 Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999 9999999999998865 668999998863 245679999999999986 46899999998855
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3.2e-23 Score=226.36 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=216.8
Q ss_pred CCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCC
Q 003104 285 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHS 361 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~ 361 (847)
.+++.++++++.+...+...++.|++|++.++.+..++. .+ .+++|++|++++|.++.+ |..+..+++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 479999999998887666677899999999999998865 45 899999999999999987 677999999999999999
Q ss_pred CCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCc--cccCccccCCCCccEEEecCccCCCcCC
Q 003104 362 CNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL--VSFPKNVCLMKSLKILCLCGCLKLEKLP 439 (847)
Q Consensus 362 ~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 439 (847)
.+...++.+. ++|++|++++|......+..+..+++|+.|++++|... ...|..+..+ +|++|++++|... .+|
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccC
Confidence 7764444444 89999999998766544556899999999999998764 3566667777 9999999998754 467
Q ss_pred ccccCCCcccEEEecCccccccC-ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCC
Q 003104 440 QDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSS 517 (847)
Q Consensus 440 ~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~ 517 (847)
..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.... ..+ .+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~ 242 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM------------------------IENGSLSFLPT 242 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC------------------------CCTTGGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc------------------------CChhHhhCCCC
Confidence 6554 78999999999999776 678999999999999987433 112 2778899
Q ss_pred CCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchh-hhc------CCCCCEEeecCCCCC
Q 003104 518 LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQ------LLKLKILCLEKCRNL 577 (847)
Q Consensus 518 L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~------l~~L~~L~L~~c~~L 577 (847)
|+.|+|++|.+. .+|..+..+++|+.|++++|+++.+|.. +.. .++|+.|++++|+..
T Consensus 243 L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 243 LRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999976 7999999999999999999999988643 322 578999999999744
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.4e-23 Score=249.46 Aligned_cols=365 Identities=20% Similarity=0.205 Sum_probs=228.4
Q ss_pred CcEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEc
Q 003104 261 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 335 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L 335 (847)
..++.+.+..+....+.+.+|.++++|++|++++|.+.+..+. ...+|++|++.+|.++.+|.. | .+.+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4678899999888899999999999999999999988764432 346899999999999999865 5 7899999999
Q ss_pred cCCCccccccc-cccCcCCCEEEcCCCCCCCC-CCC-CCCCCcCcEeeccCccccccccccccCCCCC------------
Q 003104 336 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIR-TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRL------------ 400 (847)
Q Consensus 336 ~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~-~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L------------ 400 (847)
++|+++.++.. ++++++|++|+|++|.+... .|. ++.+++|++|++++|......+.++..+.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999999865 89999999999999977543 444 7889999999999986554444443332221
Q ss_pred ---------------cEEeccCCCCccc----------------------------------------------------
Q 003104 401 ---------------ILLNLKDCRNLVS---------------------------------------------------- 413 (847)
Q Consensus 401 ---------------~~L~L~~c~~l~~---------------------------------------------------- 413 (847)
..+++.++.....
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1222221100000
Q ss_pred ------cC----------------------ccccCCCCccEEEecCccCCCcC-------------------CccccCCC
Q 003104 414 ------FP----------------------KNVCLMKSLKILCLCGCLKLEKL-------------------PQDLGEVE 446 (847)
Q Consensus 414 ------lp----------------------~~i~~l~~L~~L~Ls~c~~l~~l-------------------p~~l~~l~ 446 (847)
.+ ..+....+|+.|++.+|...... +.....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00 00112335566666655432211 11223467
Q ss_pred cccEEEecCcccc---ccCccccCCCCCCEEEeCCCCCCC-----------------------CC-cCcchhhcccccCC
Q 003104 447 CLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKGQP-----------------------PK-ILSSNFFLSLLLPN 499 (847)
Q Consensus 447 ~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~-----------------------~~-~~~~~~l~~l~l~~ 499 (847)
+|+.|+++.|.+. ..+.....+.+|+.|++..+.... .. ...+..+..+....
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 7888888877765 234444555666666665553111 00 01111111111111
Q ss_pred CCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEEeecCCCCC
Q 003104 500 KNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNL 577 (847)
Q Consensus 500 ~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L 577 (847)
...+......+. +..+++|+.|+|++|+...+..|..+..+++|++|+|++|+++.+ |..+.++++|+.|+|++|+ +
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l 530 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-F 530 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-C
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-C
Confidence 111222222333 677788888888888766555777888888899999998888866 5678888889999998884 5
Q ss_pred ccCCCCCCCcceeeccCCccccccccccccCCCCCceEEEccC-CCcchhhhhhhhHH
Q 003104 578 KSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNC-FKLVEDQVSKDNLA 634 (847)
Q Consensus 578 ~~lp~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc-~~L~~l~~~~n~~~ 634 (847)
+.+|..+ +.++++|+.+....|.. .....-.|.++ ++|+.+++++|++.
T Consensus 531 ~~l~~~~-------~~~l~~L~~L~Ls~N~l-~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 531 FSLDTFP-------YKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CBCCCGG-------GTTCTTCCEEECTTSCC-CBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCChhH-------HhCCCCCCEEECCCCcC-CCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 5554321 22334444444433311 11112224555 57888888877654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.7e-23 Score=227.90 Aligned_cols=221 Identities=23% Similarity=0.311 Sum_probs=193.9
Q ss_pred cCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEE
Q 003104 349 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 428 (847)
Q Consensus 349 ~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 428 (847)
...+++.|+|++|.+...++.+..+++|++|+|++|... .+|..++.+++|++|++++|... .+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 358999999999987755556889999999999998765 89999999999999999998755 8899999999999999
Q ss_pred ecCccCCCcCCccccC---------CCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCC
Q 003104 429 LCGCLKLEKLPQDLGE---------VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 499 (847)
Q Consensus 429 Ls~c~~l~~lp~~l~~---------l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~ 499 (847)
+++|...+.+|..+.. +++|++|++++|.++.+|..++.+++|++|++++|....
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---------------- 220 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---------------- 220 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----------------
Confidence 9999999999988765 999999999999999999999999999999999987432
Q ss_pred CCCCCccccCC-CCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEEeecCCCCC
Q 003104 500 KNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNL 577 (847)
Q Consensus 500 ~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L 577 (847)
+| .+..+++|+.|+|++|++. +.+|..++.+++|++|+|++|++. .+|..+.++++|+.|+|++|+.+
T Consensus 221 ---------l~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 221 ---------LGPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ---------CCGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred ---------CchhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 33 3778899999999999976 489999999999999999998776 89999999999999999999999
Q ss_pred ccCCCCCCCcceeeccCCcccccccccc
Q 003104 578 KSLPELPPEIVFVGAEDCTSLETISAFA 605 (847)
Q Consensus 578 ~~lp~lp~sL~~L~i~~c~~L~~l~~~~ 605 (847)
+.+|+ .+.++++|+.+..+.
T Consensus 291 ~~iP~--------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPS--------LIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCG--------GGGGSCTTCEEECCG
T ss_pred hhccH--------HHhhccCceEEeCCH
Confidence 98886 344566666665544
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=7.3e-22 Score=231.66 Aligned_cols=262 Identities=19% Similarity=0.177 Sum_probs=130.9
Q ss_pred CCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCC
Q 003104 286 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI 365 (847)
Q Consensus 286 ~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~ 365 (847)
+++.|+++++.+...+...+++|++|++.+|.++.+|. .+++|++|+|++|+++.+|. .+++|++|+|++|.+..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC
Confidence 46666666666654444444566666666666665555 34556666666665555554 44555555555554332
Q ss_pred CCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCC
Q 003104 366 RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEV 445 (847)
Q Consensus 366 ~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 445 (847)
+|. .+++|++|++++|. +..+|.. +++|++|++++|... .+|.. +
T Consensus 116 -l~~--~l~~L~~L~L~~N~-------------------------l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~ 160 (622)
T 3g06_A 116 -LPA--LPSGLCKLWIFGNQ-------------------------LTSLPVL---PPGLQELSVSDNQLA-SLPAL---P 160 (622)
T ss_dssp -CCC--CCTTCCEEECCSSC-------------------------CSCCCCC---CTTCCEEECCSSCCS-CCCCC---C
T ss_pred -CCC--CCCCcCEEECCCCC-------------------------CCcCCCC---CCCCCEEECcCCcCC-CcCCc---c
Confidence 222 34455555555543 2233331 244455555444322 23321 2
Q ss_pred CcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccC
Q 003104 446 ECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSD 525 (847)
Q Consensus 446 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 525 (847)
.+|+.|++++|.++.+| ..+++|+.|++++|.... +|. .+++|+.|++++
T Consensus 161 ~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-------------------------l~~--~~~~L~~L~L~~ 210 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-------------------------LPT--LPSELYKLWAYN 210 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-------------------------CCC--CCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-------------------------CCC--ccchhhEEECcC
Confidence 34555555555555554 234455555555543211 111 124555555555
Q ss_pred CCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCcccccccccc
Q 003104 526 CNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFA 605 (847)
Q Consensus 526 ~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~~ 605 (847)
|.+. .+|.. +++|+.|+|++|+++.+| ..+++|+.|+|++| .++.+|..+++|+.|++++| .|+.++.
T Consensus 211 N~l~--~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~-- 278 (622)
T 3g06_A 211 NRLT--SLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPE-- 278 (622)
T ss_dssp SCCS--SCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCG--
T ss_pred Cccc--ccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCH--
Confidence 5543 24321 345555555555555555 33455555555555 34455555555555555544 3333321
Q ss_pred ccCCCCCceEEEccCCCcchhhhhhhhHHHHHHH
Q 003104 606 KLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMK 639 (847)
Q Consensus 606 ~~~~~~~~~~~~~nc~~L~~l~~~~n~~~~~~~~ 639 (847)
.|.++++|+.+++++|.+.+..+.
T Consensus 279 ----------~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 ----------SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ----------GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ----------HHhhccccCEEEecCCCCCCcCHH
Confidence 145666677777777766554443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=230.13 Aligned_cols=272 Identities=14% Similarity=0.129 Sum_probs=205.8
Q ss_pred CCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccc-cccccCcCCCEEEcC
Q 003104 283 TMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLS 359 (847)
Q Consensus 283 ~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~ 359 (847)
.|+.....+++++.++..+...+++|+.|++.++.+..+|. .+ .+++|++|++++|.++.++ ..+.++++|++|+|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 45555667777777777666677788888888888888877 34 7888999999999888775 458888999999999
Q ss_pred CCCCCCCCCC-CCCCCcCcEeeccCccccccccc--cccCCCCCcEEeccCCCCcccc-CccccCCCCccEEEecCccCC
Q 003104 360 HSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQ--SVGTLKRLILLNLKDCRNLVSF-PKNVCLMKSLKILCLCGCLKL 435 (847)
Q Consensus 360 ~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l 435 (847)
+|.+....+. +.++++|++|++++|... .+|. .+..+++|++|++++|..+..+ |..+..+++|++|++++|...
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 8876655444 788889999999887544 5555 6788899999999888655555 456788889999999988877
Q ss_pred CcCCccccCCCcccEEEecCccccccCccc-cCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCC
Q 003104 436 EKLPQDLGEVECLEELDVGGTAIRQIPPSI-VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTG 514 (847)
Q Consensus 436 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~ 514 (847)
+..|..++.+++|++|++++|.++.+|..+ ..+++|+.|++++|......+ ..++....
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------------------~~l~~~~~ 247 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF--------------------SELSTGET 247 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC--------------------C------C
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc--------------------cccccccc
Confidence 777888888889999999998888777654 457889999998886432110 11222344
Q ss_pred CCCCCEEeccCCCCCCC---CCCcccCCCCCCCEEECcCCCCcccchhh-hcCCCCCEEeecCCC
Q 003104 515 LSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFSLPSSI-NQLLKLKILCLEKCR 575 (847)
Q Consensus 515 l~~L~~L~Ls~~~l~~~---~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~ 575 (847)
.+.++.++++++.+... .+|..+..+++|++|+|++|+++.+|..+ ..+++|+.|+|++|+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 56778888888775421 35667788888888888888888888775 788888888888886
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=4.1e-24 Score=274.32 Aligned_cols=228 Identities=22% Similarity=0.276 Sum_probs=171.9
Q ss_pred ChHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH---HhccCC-ceeEEEeccccccc--CChHHHHHHHHHHHhc
Q 003104 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFE-ASSFLANVREVSVT--RGLVPLQEQLLSEVLM 74 (847)
Q Consensus 1 ~~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~---i~~~F~-~~~~v~~~~~~s~~--~~l~~l~~~il~~~l~ 74 (847)
+++|.++|..+.+++++|+|+|||||||||||+++|++ +..+|. ...|+. ++.. .......+++...+..
T Consensus 133 ~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~l~~ 208 (1249)
T 3sfz_A 133 VHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKSGLLMKLQNLCMRLDQ 208 (1249)
T ss_dssp HHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCchHHHHHHHHHHHHhhh
Confidence 35778888777788999999999999999999999984 456665 555877 3332 2233445556666432
Q ss_pred CCC---ccccchhhhHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHhcCCC---------e----------------e--
Q 003104 75 ERD---LIIWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQLQALVGNHD---------W----------------F-- 122 (847)
Q Consensus 75 ~~~---~~~~~~~~~~~~i~~~L~~k--k~LlVLDDV~~~~~l~~L~~~~~---------w----------------~-- 122 (847)
... ....+.+.....+++.|.+| |+||||||||+.++|+.+..... + +
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~ 288 (1249)
T 3sfz_A 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGR 288 (1249)
T ss_dssp TCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCH
T ss_pred hcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCH
Confidence 221 11234556677777777766 99999999999999887632100 0 0
Q ss_pred -------------------------------------EecccccCCCHHHHHHHHHHHhcCCc-----------ccccee
Q 003104 123 -------------------------------------VLGSFLCGRSVEEWKSALNRLQEAPN-----------EKVLKV 154 (847)
Q Consensus 123 -------------------------------------~lgs~L~~~~~~~W~~~l~~L~~~~~-----------~~i~~~ 154 (847)
++|++|+.+. .+|+..++.+..... ..+..+
T Consensus 289 ~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 289 EKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 5677777655 579999998875442 347789
Q ss_pred eeeeccCCChhhHHHhheeeeccCCCC--HHHHHHHHhhCCCChhhhHHHHhhcCceeEe-CC---eEeehHHHHHHHHH
Q 003104 155 LRISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSDIGIRELLDKSLITIV-NN---KLWMHDLLQEMGWE 228 (847)
Q Consensus 155 L~~SYd~L~~~~k~~FL~~a~F~~~~~--~~~l~~~~~~~g~~~~~~l~~L~~k~Li~~~-~~---~~~mHdll~~~~~~ 228 (847)
+.+||+.|++++|.||+|+|+||+++. .+.++.+|.+++...+.++++|++++|++.. ++ .++|||++|+++++
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHh
Confidence 999999999999999999999999985 5779999988776678889999999999987 44 39999999999998
Q ss_pred Hhhhc
Q 003104 229 IVREH 233 (847)
Q Consensus 229 i~~~e 233 (847)
.+.++
T Consensus 448 ~~~~~ 452 (1249)
T 3sfz_A 448 KNRSQ 452 (1249)
T ss_dssp HTGGG
T ss_pred hhhHH
Confidence 86654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=7.2e-22 Score=224.31 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=174.2
Q ss_pred cceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 308 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 308 L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
.+.++..+..+..+|..+. .+++.|+|++|+++.++ ..+.++++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4455666666677776553 57777888888877665 4577788888888888766554443 7778888888888875
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCc-cccCCCcccEEEecCccccccCcc
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
.....+..+..+++|++|++++|......+..+..+++|++|++++|...+.++. .+..+++|++|++++|.++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 4443344677788888888888765444444677788888888888777666654 57778888888888888887774
Q ss_pred ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCC
Q 003104 465 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 544 (847)
Q Consensus 465 i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~ 544 (847)
+..+++|+.|++++|.... .....+.++++|+.|+|++|.+. +..+..+..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258 (440)
T ss_dssp CTTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCC
T ss_pred cCCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCC
Confidence 7778888888888875432 11122777888888888888865 35566788888888
Q ss_pred EEECcCCCCcccchh-hhcCCCCCEEeecCCC
Q 003104 545 AIDLSGNNFFSLPSS-INQLLKLKILCLEKCR 575 (847)
Q Consensus 545 ~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 575 (847)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 888888888877653 5778888888888886
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.9e-22 Score=216.03 Aligned_cols=239 Identities=20% Similarity=0.267 Sum_probs=159.2
Q ss_pred eEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCC---CCCCCCCCcCcEeeccCcc
Q 003104 310 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIR---TPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 310 ~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~---~p~~~~l~~L~~L~L~~c~ 385 (847)
.++..+..++.+|..+. ++|++|++++|+++.+|.. +.++++|++|+|++|.+... .+.+.++++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45566666666776543 5777777777777777765 57777777777777755432 1235557777777777765
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccC-ccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccc--cC
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--IP 462 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~--lp 462 (847)
+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|...+..|..+..+++|++|++++|.++. +|
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred -cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 34566677777777888777765333222 356677777888887777666667777777778888887777764 67
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCCCCEEeccCCCCCCCCCCcccCCCC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLF 541 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 541 (847)
..+..+++|++|++++|.... ..| .+..+++|+.|+|++|.+.. ..+..+..++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 223 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQ------------------------LSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLN 223 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCE------------------------ECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCT
T ss_pred hHHhhCcCCCEEECCCCCcCC------------------------cCHHHhcCCCCCCEEECCCCccCc-cChhhccCcc
Confidence 777777777777777765321 112 25666777777777777542 3334566777
Q ss_pred CCCEEECcCCCCcc-cchhhhcCC-CCCEEeecCCC
Q 003104 542 SLEAIDLSGNNFFS-LPSSINQLL-KLKILCLEKCR 575 (847)
Q Consensus 542 sL~~L~Ls~n~l~~-lp~~i~~l~-~L~~L~L~~c~ 575 (847)
+|+.|+|++|+++. .|..+..++ +|+.|+|++|+
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 77777777777763 455566663 77777777774
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=7.7e-23 Score=220.53 Aligned_cols=243 Identities=21% Similarity=0.279 Sum_probs=202.9
Q ss_pred cEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEccCCCcccc---ccccccCcCCCEEEcCCCC
Q 003104 288 RLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYL---WKGIKPLKELKFMNLSHSC 362 (847)
Q Consensus 288 r~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~L~~~~ 362 (847)
+.++++++.++..+...+.+|++|++.++.+..+|.. | .+++|++|++++|.++.+ +..+..+++|++|+|++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4566777777666666677899999999999999986 3 889999999999999865 5667789999999999997
Q ss_pred CCCCCCCCCCCCcCcEeeccCcccccccc-ccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCC-cCCc
Q 003104 363 NLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQ 440 (847)
Q Consensus 363 ~l~~~p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-~lp~ 440 (847)
+....+.+.++++|++|++++|......+ ..+..+++|++|++++|......|..+..+++|++|++++|...+ .+|.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 76544568899999999999987544433 578999999999999998777778888899999999999998766 5788
Q ss_pred cccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC
Q 003104 441 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 519 (847)
Q Consensus 441 ~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~ 519 (847)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|..... ....+..+++|+
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~ 226 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----------------------DTFPYKCLNSLQ 226 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----------------------CSGGGTTCTTCC
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----------------------ChhhccCcccCC
Confidence 899999999999999999977 67789999999999999874321 111267889999
Q ss_pred EEeccCCCCCCCCCCcccCCCC-CCCEEECcCCCCc
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLF-SLEAIDLSGNNFF 554 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~-sL~~L~Ls~n~l~ 554 (847)
.|+|++|.+. +..|..+..++ +|++|+|++|.++
T Consensus 227 ~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCee
Confidence 9999999975 46788888885 9999999999987
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=9.7e-22 Score=224.05 Aligned_cols=241 Identities=22% Similarity=0.226 Sum_probs=174.8
Q ss_pred cceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 308 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 308 L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
.+.++..+..+..+|..+. .+|++|+|++|+++.+ +..+.++++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3455566666667776543 5778888888888766 45577888888888888876655543 7778888888888876
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCc-cccCCCcccEEEecCccccccCcc
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
.....+..+..+++|++|++++|......+..+..+++|++|++++|..++.++. .+..+++|+.|++++|.++.+| .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 5544445577788888888888765443444677788888888888777776665 4777888888888888888776 4
Q ss_pred ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCC
Q 003104 465 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSL 543 (847)
Q Consensus 465 i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL 543 (847)
+..+++|+.|++++|.... ..|. +.++++|+.|+|++|.+. +..|..+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 268 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPE------------------------IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASL 268 (452)
T ss_dssp CTTCTTCCEEECTTSCCSE------------------------ECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred ccccccccEEECcCCcCcc------------------------cCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCC
Confidence 7778888888888876432 1122 677788888888888864 3556677888888
Q ss_pred CEEECcCCCCcccchh-hhcCCCCCEEeecCCC
Q 003104 544 EAIDLSGNNFFSLPSS-INQLLKLKILCLEKCR 575 (847)
Q Consensus 544 ~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 575 (847)
+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8888888888877653 5778888888888885
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=9.2e-22 Score=233.87 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=110.2
Q ss_pred CCCcEEEEcCcccCCCccc---cCCCcceEEecCCCCCCCCCC-C-CCCCcEEEEccCCCccccccc-cccCcCCCEEEc
Q 003104 285 SNLRLLEINNLYSSGNLEY---LSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNL 358 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~---~~~~L~~L~~~~~~~~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L 358 (847)
++++.|++++|.+++..+. -..+|++|++.+|.++.+|.. | .+++|++|+|++|+++.+|.+ +.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4799999999998864432 346899999999999999865 5 799999999999999999865 899999999999
Q ss_pred CCCCCCCCCCC-CCCCCcCcEeeccCccccc-cccccccCCCCCcEEeccCCCCccccCc
Q 003104 359 SHSCNLIRTPD-FTGVPNLERLNLEGCTRLL-EVHQSVGTLKRLILLNLKDCRNLVSFPK 416 (847)
Q Consensus 359 ~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~ 416 (847)
++|.+....+. |+++++|++|++++|.... .+|..++.+++|++|++++|...+..|.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99987766554 8999999999999987644 5678889999999999999875444333
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=9e-21 Score=222.39 Aligned_cols=260 Identities=21% Similarity=0.175 Sum_probs=214.1
Q ss_pred cEEEEEecCCCccccCchhhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcc
Q 003104 262 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 341 (847)
Q Consensus 262 ~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~ 341 (847)
.++.+.+..+....++...+ ++|+.|++++|.+.. ++..+.+|++|++.+|.++.+|. .+++|++|++++|.++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 46778888777666665433 799999999999985 44477899999999999999998 7899999999999999
Q ss_pred ccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCC
Q 003104 342 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 421 (847)
Q Consensus 342 ~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l 421 (847)
.+|. .+++|+.|++++|++.. +|. .+++|++|++++|. +..+|. .+.+|+.|++++|. +..+| ..+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~ 180 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLP 180 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCC
T ss_pred CCCC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccC
Confidence 9987 67899999999997554 554 25999999999985 445654 35789999999976 55677 367
Q ss_pred CCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCC
Q 003104 422 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 501 (847)
Q Consensus 422 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~ 501 (847)
++|+.|++++|... .+|.. +++|+.|++++|.++.+|.. +++|+.|++++|....
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~------------------ 235 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS------------------ 235 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC------------------
T ss_pred CCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc------------------
Confidence 99999999998754 46653 47899999999999998864 5889999999986432
Q ss_pred CCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccC
Q 003104 502 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSL 580 (847)
Q Consensus 502 ~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 580 (847)
+| ..+++|+.|+|++|.+. .+|. .+++|+.|+|++|+++.+|..+.++++|+.|+|++|+.....
T Consensus 236 -------lp--~~l~~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 236 -------LP--VLPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -------CC--CCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -------CC--CCCCcCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 33 45689999999999976 5776 678999999999999999999999999999999999754433
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=6.1e-21 Score=203.41 Aligned_cols=218 Identities=23% Similarity=0.204 Sum_probs=126.3
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~ 410 (847)
+++.+++.++.+|.++ .++|++|++++|.+....+. |..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444444444332 23455555555544433332 55555555555555544333345555555666666655543
Q ss_pred cccc-CccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCcCc
Q 003104 411 LVSF-PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILS 488 (847)
Q Consensus 411 l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~ 488 (847)
+..+ |..+..+++|++|++++|...+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|....
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----- 167 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----- 167 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-----
Confidence 3333 44455566666666666655555555566666666666666666655543 5566666666666664321
Q ss_pred chhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch-hhhcCCCCC
Q 003104 489 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLK 567 (847)
Q Consensus 489 ~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~ 567 (847)
.....+..+++|+.|++++|.+. +..|..+..+++|+.|+|++|+++.+|. .+..+++|+
T Consensus 168 ------------------~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 168 ------------------VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp ------------------ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred ------------------cCHHHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 00111556677777777777754 2456777777788888888887776664 467778888
Q ss_pred EEeecCCC
Q 003104 568 ILCLEKCR 575 (847)
Q Consensus 568 ~L~L~~c~ 575 (847)
.|+|++|+
T Consensus 229 ~L~l~~N~ 236 (285)
T 1ozn_A 229 YLRLNDNP 236 (285)
T ss_dssp EEECCSSC
T ss_pred EEeccCCC
Confidence 88888775
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.4e-21 Score=208.35 Aligned_cols=221 Identities=22% Similarity=0.233 Sum_probs=181.8
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTR 386 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~ 386 (847)
+.++..+..+..+|..+ +++|++|++++|.++.++. .+..+++|++|+|++|.+....| .+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 55667777777887655 5689999999999998874 58899999999999997776655 488899999999999874
Q ss_pred cccc-cccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-
Q 003104 387 LLEV-HQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS- 464 (847)
Q Consensus 387 l~~l-p~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~- 464 (847)
+..+ |..+..+++|++|++++|......|..+..+++|++|++++|...+..+..++.+++|++|++++|.++.+|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 5555 67889999999999999887766677788899999999999887766666789999999999999999988764
Q ss_pred ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCC
Q 003104 465 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 544 (847)
Q Consensus 465 i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~ 544 (847)
+..+++|+.|++++|.... .....+..+++|+.|++++|.+.. ..+..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAH-----------------------VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCC
T ss_pred hcCccccCEEECCCCcccc-----------------------cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccC
Confidence 8889999999999987432 112237888999999999999763 3445689999999
Q ss_pred EEECcCCCCc
Q 003104 545 AIDLSGNNFF 554 (847)
Q Consensus 545 ~L~Ls~n~l~ 554 (847)
+|+|++|.+.
T Consensus 229 ~L~l~~N~~~ 238 (285)
T 1ozn_A 229 YLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCEE
T ss_pred EEeccCCCcc
Confidence 9999999887
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=213.09 Aligned_cols=243 Identities=22% Similarity=0.233 Sum_probs=204.9
Q ss_pred CCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCC
Q 003104 286 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSC 362 (847)
Q Consensus 286 ~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~ 362 (847)
..+.++.++..+...+...+.+++.|++.++.+..++. .| .+++|++|+|++|.++.++ ..+..+++|++|+|++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 35677777777777777778899999999999988874 45 8999999999999999886 568999999999999997
Q ss_pred CCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCc-cccCCCCccEEEecCccCCCcCCc
Q 003104 363 NLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK-NVCLMKSLKILCLCGCLKLEKLPQ 440 (847)
Q Consensus 363 ~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~ 440 (847)
+....+. |.++++|++|+|++|......+..+..+++|++|++++|+.+..++. .+..+++|++|++++|.. ..+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc
Confidence 7766554 99999999999999886655556889999999999999888888776 578999999999999865 46664
Q ss_pred cccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC
Q 003104 441 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 519 (847)
Q Consensus 441 ~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~ 519 (847)
+..+++|++|++++|.++.+ |..+..+++|+.|++++|.... .....+..+++|+
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-----------------------IERNAFDNLQSLV 258 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-----------------------ECTTSSTTCTTCC
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-----------------------EChhhhcCCCCCC
Confidence 78999999999999999976 6788999999999999987432 1122378899999
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 554 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~ 554 (847)
.|+|++|++.. ..+..+..+++|+.|+|++|.+.
T Consensus 259 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCc-cChhHhccccCCCEEEcCCCCcc
Confidence 99999999763 44556788999999999999775
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.6e-20 Score=213.95 Aligned_cols=243 Identities=22% Similarity=0.224 Sum_probs=203.6
Q ss_pred CCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCC
Q 003104 286 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSC 362 (847)
Q Consensus 286 ~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~ 362 (847)
..+.+++++..+...+..++.++++|++.++.+..++. .| .+++|++|+|++|.++.++ ..+..+++|++|+|++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34667777777777666777899999999999988854 45 8999999999999999886 568999999999999998
Q ss_pred CCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCc-cccCCCCccEEEecCccCCCcCCc
Q 003104 363 NLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK-NVCLMKSLKILCLCGCLKLEKLPQ 440 (847)
Q Consensus 363 ~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~ 440 (847)
+....+. |.++++|++|+|++|......+..+.++++|++|++++|+.++.+|. .+..+++|++|++++|... .+|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-
Confidence 7766665 88999999999999886655556889999999999999988888876 4788999999999998755 455
Q ss_pred cccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC
Q 003104 441 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 519 (847)
Q Consensus 441 ~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~ 519 (847)
.+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.... .....+..+++|+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-----------------------IERNAFDGLASLV 269 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-----------------------ECTTTTTTCTTCC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-----------------------ECHHHhcCCCCCC
Confidence 478899999999999999976 6678999999999999987432 1122378899999
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 554 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~ 554 (847)
.|+|++|++.. ..+..+..+++|+.|+|++|.+.
T Consensus 270 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 270 ELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence 99999999762 44556788999999999999876
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=211.52 Aligned_cols=261 Identities=22% Similarity=0.243 Sum_probs=206.5
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 386 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 386 (847)
...+..++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|+|++|.+....|. |.++++|++|++++|..
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 346778889999998764 489999999999999886 699999999999999987776664 99999999999999875
Q ss_pred cccccccccCCCCCcEEeccCCCCccccCc--cccCCCCccEEEecCccCCCcC-CccccCCCcccEEEecCcccccc-C
Q 003104 387 LLEVHQSVGTLKRLILLNLKDCRNLVSFPK--NVCLMKSLKILCLCGCLKLEKL-PQDLGEVECLEELDVGGTAIRQI-P 462 (847)
Q Consensus 387 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p 462 (847)
....+..++++++|++|++++|.. ..+|. .+..+++|++|++++|...+.+ |..++.+++|++|++++|.++.+ |
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 543334489999999999999864 46665 6889999999999999655554 66789999999999999999965 7
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC--CCCCCCCCEEeccCCCCCCCCCCcc---c
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR--FTGLSSLQTLDLSDCNLLEGAIPSD---I 537 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~lp~~---l 537 (847)
..+..+++|++|++++|.... +|. +..+++|+.|++++|.+.. ..+.. .
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~ 245 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHIL-------------------------LLEIFVDVTSSVECLELRDTDLDT-FHFSELSTG 245 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTT-------------------------HHHHHHHHTTTEEEEEEESCBCTT-CCCC-----
T ss_pred HHHhccccCCeecCCCCcccc-------------------------chhhhhhhcccccEEECCCCcccc-ccccccccc
Confidence 889999999999999987422 222 3457899999999999763 22222 2
Q ss_pred CCCCCCCEEECcCCCCc-----ccchhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCcccccccccc
Q 003104 538 GSLFSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFA 605 (847)
Q Consensus 538 ~~l~sL~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~~ 605 (847)
...+.++.++|+++.+. .+|.++..+++|+.|+|++|+ ++.+|. .+ +.++++|+.+....
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~---~~----~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD---GI----FDRLTSLQKIWLHT 310 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT---TT----TTTCTTCCEEECCS
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH---HH----HhcCCCCCEEEeeC
Confidence 34677899999998776 578899999999999999994 555654 11 13455666655544
No 64
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=4.8e-22 Score=234.58 Aligned_cols=250 Identities=21% Similarity=0.246 Sum_probs=173.8
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH--H-hccC-CceeEEEecccccccCChHHHHHHH---HHHHhc
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--L-KDQF-EASSFLANVREVSVTRGLVPLQEQL---LSEVLM 74 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~--i-~~~F-~~~~~v~~~~~~s~~~~l~~l~~~i---l~~~l~ 74 (847)
++|..+|....++.++|+|+|||||||||||+.+|++ + ..+| ++++|+.. +.. ....+...+ ... +.
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~----~~~-~~~~~~~~l~~l~~~-l~ 207 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV----GKQ-DKSGLLMKLQNLCTR-LD 207 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE----ESC-CHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC----CCC-chHHHHHHHHHHHHH-hc
Confidence 5677777765677899999999999999999999984 3 7889 57899873 222 222233332 233 22
Q ss_pred CC----CccccchhhhHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHhcCCCe-------------------------e-
Q 003104 75 ER----DLIIWDVHKGINLIRWRLCR--KRVLVILDDVDQLEQLQALVGNHDW-------------------------F- 122 (847)
Q Consensus 75 ~~----~~~~~~~~~~~~~i~~~L~~--kk~LlVLDDV~~~~~l~~L~~~~~w-------------------------~- 122 (847)
.. .....+.......+++.+.+ +++||||||||+..+++.+.....- +
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~ 287 (591)
T 1z6t_A 208 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287 (591)
T ss_dssp SSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCC
T ss_pred cccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCC
Confidence 11 12234455667778888866 7999999999999998876321100 0
Q ss_pred --------------------------------------EecccccCCCHHHHHHHHHHHhcCCc-----------cccce
Q 003104 123 --------------------------------------VLGSFLCGRSVEEWKSALNRLQEAPN-----------EKVLK 153 (847)
Q Consensus 123 --------------------------------------~lgs~L~~~~~~~W~~~l~~L~~~~~-----------~~i~~ 153 (847)
.+|+.++++ ..+|+..++.+..... ..+..
T Consensus 288 ~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 366 (591)
T 1z6t_A 288 KEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366 (591)
T ss_dssp HHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHhHHHHhhhccccchHHHHH
Confidence 344455443 2368888888765432 35778
Q ss_pred eeeeeccCCChhhHHHhheeeeccCCCCH--HHHHHHHhhCCCChhhhHHHHhhcCceeEe-C---CeEeehHHHHHHHH
Q 003104 154 VLRISYDGLDRRDKEIFLDIACFFKGKDE--DRVRKKLDSCGFNSDIGIRELLDKSLITIV-N---NKLWMHDLLQEMGW 227 (847)
Q Consensus 154 ~L~~SYd~L~~~~k~~FL~~a~F~~~~~~--~~l~~~~~~~g~~~~~~l~~L~~k~Li~~~-~---~~~~mHdll~~~~~ 227 (847)
++..||+.||+++|.||+++|+||+|+.+ +.+..+|.+.+......++.|++++|++.. + ..+.||++++++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 89999999999999999999999998764 668888976544456779999999999876 2 26999999999988
Q ss_pred HHhhh------------cC-------CCCCCCeeeccCchhHHHHHhcCc
Q 003104 228 EIVRE------------HH-------SDKPGKWSRLWLYKDVYHVLSKYM 258 (847)
Q Consensus 228 ~i~~~------------e~-------~~~p~~~~rL~~~~d~~~vl~~~~ 258 (847)
+.... .. +..++...++|..+.++|+.....
T Consensus 447 ~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 447 EKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496 (591)
T ss_dssp HHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence 76221 11 122344556666777777766443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.6e-22 Score=219.21 Aligned_cols=215 Identities=16% Similarity=0.095 Sum_probs=131.7
Q ss_pred CCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 327 PEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 327 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
+++|++|++++|.++.++ ..+..+++|++|+|++|.+....+ +..+++|++|++++|.. ..++ .+++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc----CCCCcCEEEC
Confidence 345666666666666554 346666666666666665543333 66666677777766542 2222 3366777777
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccC-ccc-cCCCCCCEEEeCCCCCCC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSI-VQLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i-~~l~~L~~L~L~~~~~~~ 483 (847)
++|......+. .+++|++|++++|...+..|..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|....
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 76654333222 3566777777776665555556666677777777777766442 333 356777777777665321
Q ss_pred CCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcC
Q 003104 484 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 563 (847)
Q Consensus 484 ~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l 563 (847)
++....+++|++|+|++|.+. .+|..+..+++|+.|+|++|+++.+|..+..+
T Consensus 184 -------------------------~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 184 -------------------------VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp -------------------------EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred -------------------------cccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 223334667777777777654 45555666777777777777777777767777
Q ss_pred CCCCEEeecCCCCC
Q 003104 564 LKLKILCLEKCRNL 577 (847)
Q Consensus 564 ~~L~~L~L~~c~~L 577 (847)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 77777777777544
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.9e-22 Score=218.59 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=152.5
Q ss_pred CCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccC
Q 003104 306 NNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEG 383 (847)
Q Consensus 306 ~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~ 383 (847)
.+|+.|++.++.+..++. .+ .+++|++|++++|.+..++. +..+++|++|+|++|.+... ...++|++|++++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l----~~~~~L~~L~l~~ 108 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL----LVGPSIETLHAAN 108 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE----EECTTCCEEECCS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc----cCCCCcCEEECCC
Confidence 467777777777766653 33 66777777777777765554 66777777777777754322 2336777777777
Q ss_pred ccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccc-cCCCcccEEEecCccccccC
Q 003104 384 CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDL-GEVECLEELDVGGTAIRQIP 462 (847)
Q Consensus 384 c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp 462 (847)
|......+. .+++|++|++++|......|..+..+++|++|++++|...+..|..+ ..+++|++|++++|.++.+|
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 654433322 35667777777766555445556667777777777776655545444 35677777777777777664
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 542 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~s 542 (847)
.. ..+++|+.|++++|.... ..+.+..+++|+.|+|++|.+. .+|..+..+++
T Consensus 186 ~~-~~l~~L~~L~Ls~N~l~~------------------------l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~ 238 (317)
T 3o53_A 186 GQ-VVFAKLKTLDLSSNKLAF------------------------MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQN 238 (317)
T ss_dssp CC-CCCTTCCEEECCSSCCCE------------------------ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTT
T ss_pred cc-cccccCCEEECCCCcCCc------------------------chhhhcccCcccEEECcCCccc--chhhHhhcCCC
Confidence 33 346777777777765321 0112556667777777777755 46666777777
Q ss_pred CCEEECcCCCCc--ccchhhhcCCCCCEEeecCCCCCcc
Q 003104 543 LEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKS 579 (847)
Q Consensus 543 L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~ 579 (847)
|+.|+|++|.+. .+|.++..+++|+.|++.+|+.++.
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 777777777776 5666677777777777766654443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.9e-22 Score=216.63 Aligned_cols=239 Identities=21% Similarity=0.175 Sum_probs=186.1
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcc--ccccccc-------cCcCCCEEEcCCCCCCCCCCC-C--CCCC
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK--YLWKGIK-------PLKELKFMNLSHSCNLIRTPD-F--TGVP 374 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~L~~~~~l~~~p~-~--~~l~ 374 (847)
+|+.|++.++.+ .+|..+.. .|+.|++++|.+. .+|..+. ++++|++|+|++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 455555566666 55554311 2777788888875 3555554 689999999999988866665 4 8899
Q ss_pred cCcEeeccCccccccccccccCC-----CCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCc--CCccc--cCC
Q 003104 375 NLERLNLEGCTRLLEVHQSVGTL-----KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--LPQDL--GEV 445 (847)
Q Consensus 375 ~L~~L~L~~c~~l~~lp~~i~~L-----~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~l--~~l 445 (847)
+|++|++++|..... |..++.+ ++|++|++++|......|..++.+++|++|++++|...+. +|..+ +.+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999876555 7778777 8999999999887666668889999999999999887654 34444 888
Q ss_pred CcccEEEecCcccccc---Ccc-ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEE
Q 003104 446 ECLEELDVGGTAIRQI---PPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTL 521 (847)
Q Consensus 446 ~~L~~L~L~~~~i~~l---p~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L 521 (847)
++|++|++++|.++.+ +.. +..+++|+.|++++|..... ...+.+..+++|+.|
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA----------------------AGAPSCDWPSQLNSL 258 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------------------CCCSCCCCCTTCCEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------------------cchhhhhhcCCCCEE
Confidence 9999999999999844 333 35789999999999874431 012336678899999
Q ss_pred eccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 522 DLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 522 ~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
+|++|.+. .+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 259 ~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 259 NLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99999976 6888776 899999999999998886 8999999999999996
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-20 Score=215.20 Aligned_cols=215 Identities=16% Similarity=0.082 Sum_probs=174.3
Q ss_pred CCCcEEEEccCCCccccc-cccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 327 PEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 327 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
+++|++|+|++|.+..++ ..+..+++|++|+|++|.+...+| ++.+++|++|+|++|.. ..+| ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEEC
Confidence 448999999999998775 568899999999999987665555 88999999999999853 3333 3388999999
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccc-cCcccc-CCCCCCEEEeCCCCCCC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIV-QLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~-~l~~L~~L~L~~~~~~~ 483 (847)
++|......+. .+++|++|++++|...+..|..++.+++|+.|++++|.++. .|..+. .+++|+.|++++|....
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99875554433 46889999999998888878888899999999999999985 555665 78999999999987432
Q ss_pred CCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcC
Q 003104 484 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 563 (847)
Q Consensus 484 ~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l 563 (847)
++....+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|..+..+
T Consensus 184 -------------------------~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 184 -------------------------VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp -------------------------EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred -------------------------ccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 244556889999999999876 47777888999999999999999999888899
Q ss_pred CCCCEEeecCCCCC
Q 003104 564 LKLKILCLEKCRNL 577 (847)
Q Consensus 564 ~~L~~L~L~~c~~L 577 (847)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 99999999998643
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.6e-22 Score=231.06 Aligned_cols=346 Identities=16% Similarity=0.178 Sum_probs=224.1
Q ss_pred CcEEEEEecCCCccccCc-hhhcCCCCCcEEEEcCcccCCC----ccc---cCCCcceEEecCCCCCCCC--CCC-CCC-
Q 003104 261 DAVEAIIVDVPEMTELEA-KSFSTMSNLRLLEINNLYSSGN----LEY---LSNNLRYLKWHEYPFNSLP--VSF-RPE- 328 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~-~~f~~~~~Lr~L~l~~~~l~~~----~~~---~~~~L~~L~~~~~~~~~lp--~~~-~~~- 328 (847)
..++.+.+..+....... ..|..+++|+.|+++++.+.+. ++. ..++|++|++.++.+.... ..+ .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356677776664433333 3377888999999998887642 121 2367889999888774321 111 222
Q ss_pred ---CcEEEEccCCCcc-----ccccccccCcCCCEEEcCCCCCCCCCCC------CCCCCcCcEeeccCccccc----cc
Q 003104 329 ---KLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIRTPD------FTGVPNLERLNLEGCTRLL----EV 390 (847)
Q Consensus 329 ---~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l~~~p~------~~~l~~L~~L~L~~c~~l~----~l 390 (847)
+|++|++++|.+. .++..+..+++|++|+|++|.+....+. ....++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 6999999999887 4577788899999999998875432221 2335689999999987554 34
Q ss_pred cccccCCCCCcEEeccCCCCccccCcccc-----CCCCccEEEecCccCCCc----CCccccCCCcccEEEecCcccccc
Q 003104 391 HQSVGTLKRLILLNLKDCRNLVSFPKNVC-----LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIRQI 461 (847)
Q Consensus 391 p~~i~~L~~L~~L~L~~c~~l~~lp~~i~-----~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~~l 461 (847)
+..+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 56677788999999998875443332232 356899999999876553 566777888999999999887742
Q ss_pred -----Ccc-ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCC---
Q 003104 462 -----PPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEG--- 531 (847)
Q Consensus 462 -----p~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~--- 531 (847)
+.. ...+++|++|++++|...... . ..++. +..+++|++|+|++|.+.+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~---~-----------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKG---C-----------------GDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHH---H-----------------HHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHH---H-----------------HHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 222 345889999999988532200 0 00222 45577888888888875321
Q ss_pred CCCccc-CCCCCCCEEECcCCCCcc-----cchhhhcCCCCCEEeecCCCCCccCC---------CCCCCcceeeccCCc
Q 003104 532 AIPSDI-GSLFSLEAIDLSGNNFFS-----LPSSINQLLKLKILCLEKCRNLKSLP---------ELPPEIVFVGAEDCT 596 (847)
Q Consensus 532 ~lp~~l-~~l~sL~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~~L~~lp---------~lp~sL~~L~i~~c~ 596 (847)
.+...+ ...++|++|+|++|.++. +|..+..+++|+.|+|++|+ ++... .-.++|++|++++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 011111 223688888888888873 56677788888888888884 33211 11346777777766
Q ss_pred cccccccccccCCCCCceEEEccCCCcchhhhhhhhHHH
Q 003104 597 SLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 635 (847)
Q Consensus 597 ~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~~~ 635 (847)
.+...... .....+.+|++|+++++++|++..
T Consensus 381 ~i~~~~~~-------~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 381 DVSDSSCS-------SLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCHHHHH-------HHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCChhhHH-------HHHHHHHhCCCccEEECCCCCCCH
Confidence 33321100 011125667888888888887653
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.1e-19 Score=190.57 Aligned_cols=218 Identities=20% Similarity=0.215 Sum_probs=119.1
Q ss_pred EEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccc
Q 003104 311 LKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLL 388 (847)
Q Consensus 311 L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~ 388 (847)
.+..+..+..+|..+. ++|++|++++|.++.++. .+..+++|++|+|++|.+....+ .+.++++|++|++++|....
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3444555566665542 456666666666666654 45666666666666665444333 25555666666666554444
Q ss_pred cccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccc--cCcccc
Q 003104 389 EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--IPPSIV 466 (847)
Q Consensus 389 ~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~--lp~~i~ 466 (847)
..+..+..+++|++|++++|. ..+..+..++.+++|++|++++|.++. +|..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN------------------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC------------------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cChhhhcCCccccEEECCCCC------------------------ccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 333445555555555555544 333333334444445555555544443 344455
Q ss_pred CCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC-EEeccCCCCCCCCCCcccCCCCCCCE
Q 003104 467 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCNLLEGAIPSDIGSLFSLEA 545 (847)
Q Consensus 467 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~~~lp~~l~~l~sL~~ 545 (847)
.+++|++|++++|......+ ..+..+..++.|. .|++++|.+. .++.......+|++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYC--------------------TDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKE 204 (276)
T ss_dssp GCTTCCEEECCSSCCCEECG--------------------GGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEE
T ss_pred cCCCCCEEECCCCCCCcCCH--------------------HHhhhhhhccccceeeecCCCccc--ccCccccCCCcccE
Confidence 55555555555543221000 0011112223333 6777777754 35444445557888
Q ss_pred EECcCCCCcccchh-hhcCCCCCEEeecCCC
Q 003104 546 IDLSGNNFFSLPSS-INQLLKLKILCLEKCR 575 (847)
Q Consensus 546 L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 575 (847)
|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCc
Confidence 88888888877765 4778888888888886
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=7.4e-22 Score=213.47 Aligned_cols=245 Identities=20% Similarity=0.201 Sum_probs=189.0
Q ss_pred hhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCC--CCCCC--------CCCCcEEEEccCCCcc-cccccc-
Q 003104 280 SFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNS--LPVSF--------RPEKLFKLNLCNSRIK-YLWKGI- 347 (847)
Q Consensus 280 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~--lp~~~--------~~~~L~~L~L~~~~l~-~l~~~~- 347 (847)
.+..+++|+.|++++|.+ ..+...+..|+.|++.++.+.. +|..+ .+++|++|++++|.++ .+|..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 345667788888888888 4444455568888888877754 44333 4789999999999998 677776
Q ss_pred -ccCcCCCEEEcCCCCCCCCCCCCCCC-----CcCcEeeccCccccccccccccCCCCCcEEeccCCCCccc--cCccc-
Q 003104 348 -KPLKELKFMNLSHSCNLIRTPDFTGV-----PNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS--FPKNV- 418 (847)
Q Consensus 348 -~~l~~L~~L~L~~~~~l~~~p~~~~l-----~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~--lp~~i- 418 (847)
..+++|++|+|++|.+...++.++.+ ++|++|++++|......|..++.+++|++|++++|...+. +|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 88999999999999877763335555 8999999999887776668899999999999999886654 34444
Q ss_pred -cCCCCccEEEecCccCCC--cCC-ccccCCCcccEEEecCccccccC--ccccCCCCCCEEEeCCCCCCCCCcCcchhh
Q 003104 419 -CLMKSLKILCLCGCLKLE--KLP-QDLGEVECLEELDVGGTAIRQIP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFF 492 (847)
Q Consensus 419 -~~l~~L~~L~Ls~c~~l~--~lp-~~l~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l 492 (847)
..+++|++|++++|...+ .++ ..+..+++|++|++++|.++..+ ..+..+++|++|++++|....
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 267 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--------- 267 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS---------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh---------
Confidence 788999999999987652 223 23457789999999999999654 456678999999999987432
Q ss_pred cccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcc
Q 003104 493 LSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS 555 (847)
Q Consensus 493 ~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~ 555 (847)
+|. +. ++|+.|+|++|++. .+|. +..+++|++|+|++|.++.
T Consensus 268 ----------------ip~~~~--~~L~~L~Ls~N~l~--~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 ----------------VPKGLP--AKLSVLDLSYNRLD--RNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ----------------CCSSCC--SEEEEEECCSSCCC--SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred ----------------hhhhcc--CCceEEECCCCCCC--CChh-HhhCCCCCEEeccCCCCCC
Confidence 333 33 78999999999976 3576 8899999999999998864
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.9e-20 Score=213.36 Aligned_cols=231 Identities=17% Similarity=0.142 Sum_probs=181.1
Q ss_pred CcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc
Q 003104 307 NLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 384 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c 384 (847)
+|+.|++.++.+..++. .| .+++|++|+|++|.+..+++ +..+++|++|+|++|.+.... ..++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEECcCC
Confidence 56666666666655553 34 67788888888888886655 888888999999888654322 2378899999988
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcccc-CCCcccEEEecCccccccCc
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG-EVECLEELDVGGTAIRQIPP 463 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp~ 463 (847)
......+. .+++|+.|++++|......|..++.+++|++|++++|...+..|..+. .+++|+.|++++|.++.+|.
T Consensus 110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 75554433 467889999999887777777788889999999999888777777765 78899999999999987754
Q ss_pred cccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCC
Q 003104 464 SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSL 543 (847)
Q Consensus 464 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL 543 (847)
...+++|+.|++++|.... ..|.+..+++|+.|+|++|.+. .+|..++.+++|
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L 239 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF------------------------MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNL 239 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE------------------------ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTC
T ss_pred -cccCCCCCEEECCCCCCCC------------------------CCHhHcCCCCccEEEecCCcCc--ccchhhccCCCC
Confidence 4468999999999886432 1223677889999999999976 588889999999
Q ss_pred CEEECcCCCCc--ccchhhhcCCCCCEEeec
Q 003104 544 EAIDLSGNNFF--SLPSSINQLLKLKILCLE 572 (847)
Q Consensus 544 ~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~ 572 (847)
+.|++++|.+. .+|.++..+++|+.|++.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999998 788888999999888886
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.1e-18 Score=184.97 Aligned_cols=218 Identities=20% Similarity=0.158 Sum_probs=158.8
Q ss_pred EEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCC
Q 003104 289 LLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLI 365 (847)
Q Consensus 289 ~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~ 365 (847)
..+..+..+...+..++.+|++|++.++.+..++. .+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+..
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 44555555655555667899999999999999886 44 88999999999999998875 58999999999999998877
Q ss_pred CCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCcc-ccCccccCCCCccEEEecCccCCCcCCcccc
Q 003104 366 RTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLEKLPQDLG 443 (847)
Q Consensus 366 ~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 443 (847)
..+. +.++++|++|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|...+..+..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 6654 8999999999999987665555578888888888888876544 3566677777777777777765554445555
Q ss_pred CCCccc----EEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC
Q 003104 444 EVECLE----ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 519 (847)
Q Consensus 444 ~l~~L~----~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~ 519 (847)
.+++|+ .|++++|.++.++...... .+|+
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-----------------------------------------------~~L~ 203 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-----------------------------------------------IRLK 203 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-----------------------------------------------CCEE
T ss_pred hhhhccccceeeecCCCcccccCccccCC-----------------------------------------------Cccc
Confidence 555454 5666666655554433222 2566
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 003104 520 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 554 (847)
Q Consensus 520 ~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~ 554 (847)
.|+|++|.+.. ..+..+..+++|+.|+|++|.+.
T Consensus 204 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 204 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred EEECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence 66666666542 22334577788888888888766
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.4e-21 Score=223.25 Aligned_cols=315 Identities=16% Similarity=0.111 Sum_probs=215.2
Q ss_pred CcEEEEEecCCCcccc----CchhhcCCCCCcEEEEcCcccCCC-c---cccCC----CcceEEecCCCCC-----CCCC
Q 003104 261 DAVEAIIVDVPEMTEL----EAKSFSTMSNLRLLEINNLYSSGN-L---EYLSN----NLRYLKWHEYPFN-----SLPV 323 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l----~~~~f~~~~~Lr~L~l~~~~l~~~-~---~~~~~----~L~~L~~~~~~~~-----~lp~ 323 (847)
..++.+.+..+..... -+.++..+++|+.|++++|.+.+. + ..... +|++|++.+|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 4577788887754322 246788899999999999987652 1 12222 7999999999987 3455
Q ss_pred CC-CCCCcEEEEccCCCcccc-----ccc-cccCcCCCEEEcCCCCCCCCC----C-CCCCCCcCcEeeccCcccccccc
Q 003104 324 SF-RPEKLFKLNLCNSRIKYL-----WKG-IKPLKELKFMNLSHSCNLIRT----P-DFTGVPNLERLNLEGCTRLLEVH 391 (847)
Q Consensus 324 ~~-~~~~L~~L~L~~~~l~~l-----~~~-~~~l~~L~~L~L~~~~~l~~~----p-~~~~l~~L~~L~L~~c~~l~~lp 391 (847)
.+ .+++|++|++++|.+... ... ....++|++|+|++|.+.... + .+..+++|++|++++|......+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 55 788999999999998732 222 234678999999999766532 2 25668999999999988554434
Q ss_pred cccc-----CCCCCcEEeccCCCCccc----cCccccCCCCccEEEecCccCCCcC-----CccccCCCcccEEEecCcc
Q 003104 392 QSVG-----TLKRLILLNLKDCRNLVS----FPKNVCLMKSLKILCLCGCLKLEKL-----PQDLGEVECLEELDVGGTA 457 (847)
Q Consensus 392 ~~i~-----~L~~L~~L~L~~c~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~~l-----p~~l~~l~~L~~L~L~~~~ 457 (847)
..+. .+++|++|++++|..... ++..+..+++|++|++++|...... +.....+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4443 367999999999875542 5777778999999999998654321 2233468899999999999
Q ss_pred ccc-----cCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC--CCCCCCCCEEeccCCCCCC
Q 003104 458 IRQ-----IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR--FTGLSSLQTLDLSDCNLLE 530 (847)
Q Consensus 458 i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~ 530 (847)
++. ++..+..+++|++|++++|......+. .+.. ....++|++|++++|.+..
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------------------~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--------------------LLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--------------------HHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--------------------HHHHHhccCCccceeeEcCCCCCch
Confidence 985 788888899999999999863210000 0011 1233578888888887543
Q ss_pred CC---CCcccCCCCCCCEEECcCCCCccc-chhhhc-----CCCCCEEeecCCCCCc----cCCCC---CCCcceeeccC
Q 003104 531 GA---IPSDIGSLFSLEAIDLSGNNFFSL-PSSINQ-----LLKLKILCLEKCRNLK----SLPEL---PPEIVFVGAED 594 (847)
Q Consensus 531 ~~---lp~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~-----l~~L~~L~L~~c~~L~----~lp~l---p~sL~~L~i~~ 594 (847)
.. ++..+..+++|++|+|++|.++.. +..+.. .++|+.|+|++|+.-. .+|.. -++|++|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 21 455566677888888888877632 223322 6688888888874321 33321 15566666655
Q ss_pred C
Q 003104 595 C 595 (847)
Q Consensus 595 c 595 (847)
|
T Consensus 408 N 408 (461)
T 1z7x_W 408 N 408 (461)
T ss_dssp S
T ss_pred C
Confidence 5
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.8e-18 Score=183.13 Aligned_cols=202 Identities=18% Similarity=0.080 Sum_probs=174.4
Q ss_pred hhcCCCCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccccccCcCCCEEE
Q 003104 280 SFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMN 357 (847)
Q Consensus 280 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~ 357 (847)
.+.++++++.++++++.++..+...+..++.|++.++.+..++. .+ .+++|++|++++|.++.++.. ..+++|++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 46788999999999999988777788899999999999988864 34 889999999999999998765 7899999999
Q ss_pred cCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCc
Q 003104 358 LSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK 437 (847)
Q Consensus 358 L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 437 (847)
|++|.+...+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|...+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 99998765444588999999999999876655557899999999999999876554445567899999999999876654
Q ss_pred CCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCC
Q 003104 438 LPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 438 lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 482 (847)
.+..+..+++|+.|++++|.++.+|..+..+.+|+.|++++|...
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 455678899999999999999999999999999999999998743
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=7.9e-18 Score=177.77 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=90.3
Q ss_pred cEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccccccc-cccCCCCCcEEeccC
Q 003104 330 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQ-SVGTLKRLILLNLKD 407 (847)
Q Consensus 330 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~L~~ 407 (847)
++.+++++++++.+|..+. ++|+.|+|++|.+....+ .|.++++|++|++++|... .+|. .+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC
Confidence 3344444444444444332 345555555544333332 2444555555555444322 2222 224444444444444
Q ss_pred CCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcC
Q 003104 408 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKIL 487 (847)
Q Consensus 408 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~ 487 (847)
|......+..+..+++|++|++++|...+..+..++.+++|++|++++|.++.+|...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------------------- 152 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV---------------------- 152 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH----------------------
Confidence 4322222223344455555555554444333444445555555555555554444321
Q ss_pred cchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchh-hhcCCCC
Q 003104 488 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKL 566 (847)
Q Consensus 488 ~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~l~~L 566 (847)
+..+++|+.|+|++|.+.. ..+..+..+++|++|+|++|+++.+|.. +..+++|
T Consensus 153 ------------------------~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 153 ------------------------FDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ------------------------TTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ------------------------ccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 3344455555555554331 2223355555666666666655555442 4555666
Q ss_pred CEEeecCCC
Q 003104 567 KILCLEKCR 575 (847)
Q Consensus 567 ~~L~L~~c~ 575 (847)
+.|+|++|+
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 666666654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.9e-18 Score=178.25 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=170.2
Q ss_pred CCCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCC-CC-CCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCC
Q 003104 285 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHS 361 (847)
Q Consensus 285 ~~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~ 361 (847)
.+.+.++++++.++..+...+.+++.|++.++.+..+|. .| .+++|++|++++|.++.+|.. +..+++|++|+|++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 357889999998887666677899999999999999986 35 899999999999999999876 588999999999999
Q ss_pred CCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCc
Q 003104 362 CNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ 440 (847)
Q Consensus 362 ~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 440 (847)
.+....+. +.++++|++|++++|......+..++.+++|++|++++|......+..+..+++|++|++++|...+..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 87766654 78999999999999887666667789999999999999875544444578899999999999987766666
Q ss_pred cccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCC
Q 003104 441 DLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 441 ~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~ 482 (847)
.+..+++|++|++++|.++.+|.. +..+++|+.|++++|...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 789999999999999999988875 788999999999998743
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.1e-17 Score=178.39 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=132.2
Q ss_pred cccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccE
Q 003104 347 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKI 426 (847)
Q Consensus 347 ~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 426 (847)
+.++++|+.++++++.+...++.+. ++|++|+|++|......+..+..+++|++|++++|. +..++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 3445555566665554333322332 456666666665554445566667777777777654 3334432 56777777
Q ss_pred EEecCccCCCcCCccccCCCcccEEEecCccccccC-ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCc
Q 003104 427 LCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM 505 (847)
Q Consensus 427 L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 505 (847)
|++++|.. ..+|..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|....
T Consensus 82 L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------------- 138 (290)
T 1p9a_G 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------- 138 (290)
T ss_dssp EECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC----------------------
T ss_pred EECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc----------------------
Confidence 77777653 466666777777777777777777766 346777778888877775432
Q ss_pred cccCCC--CCCCCCCCEEeccCCCCCCCCCCc-ccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 506 CLSFPR--FTGLSSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 506 ~~~l~~--l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
+|. +..+++|+.|+|++|++. .+|. .+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+
T Consensus 139 ---~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 139 ---LPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---CCTTTTTTCTTCCEEECTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---cChhhcccccCCCEEECCCCcCC--ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 222 567788888888888865 3554 4577888888888888888888888888888888888886
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.2e-20 Score=201.74 Aligned_cols=222 Identities=16% Similarity=0.169 Sum_probs=162.5
Q ss_pred CcEEEEccCCCccccccccccC--cCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccc-ccccccCCCCCcEEec
Q 003104 329 KLFKLNLCNSRIKYLWKGIKPL--KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE-VHQSVGTLKRLILLNL 405 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~~~~~l--~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~L 405 (847)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4567777777665 3445555 788888888887777777777888888888888875544 7777888888888888
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCC--cCCccccCCCcccEEEecCc-cccc--cCccccCCC-CCCEEEeCCC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGT-AIRQ--IPPSIVQLV-NLKIFSLHGC 479 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~ 479 (847)
++|......|..++.+++|++|++++|...+ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 8887666677777788888888888885444 36666778888888888888 7773 677778888 8888888887
Q ss_pred CC-CCCCcCcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCC-Cc-c
Q 003104 480 KG-QPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN-FF-S 555 (847)
Q Consensus 480 ~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~-l~-~ 555 (847)
.. ... ..++. +..+++|++|++++|...++..+..+..+++|++|+|++|. +. .
T Consensus 206 ~~~~~~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 206 RKNLQK----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp GGGSCH----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred cccCCH----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 41 110 11222 45677888888888885444666677888888888888884 32 1
Q ss_pred cchhhhcCCCCCEEeecCC
Q 003104 556 LPSSINQLLKLKILCLEKC 574 (847)
Q Consensus 556 lp~~i~~l~~L~~L~L~~c 574 (847)
....+.++++|+.|++++|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhcCCCCCEEeccCc
Confidence 1125677888888888888
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.8e-18 Score=179.28 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=113.0
Q ss_pred CCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCC--CCCCCCcCcEeeccCcccccccc-cc
Q 003104 318 FNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVH-QS 393 (847)
Q Consensus 318 ~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp-~~ 393 (847)
++.+|. -+.+|++|++++|+++.+|. .+..+++|++|++++|..+..++ .|.++++|++|++++|..+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556666 33467777777777776665 46666666666666665232222 25566666666666522233333 34
Q ss_pred ccCCCCCcEEeccCCCCccccCccccCCCCcc---EEEecCccCCCcCC-ccccCCCccc-EEEecCccccccCccccCC
Q 003104 394 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK---ILCLCGCLKLEKLP-QDLGEVECLE-ELDVGGTAIRQIPPSIVQL 468 (847)
Q Consensus 394 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~---~L~Ls~c~~l~~lp-~~l~~l~~L~-~L~L~~~~i~~lp~~i~~l 468 (847)
+..+++|++|++++|. +..+|. +..+++|+ +|++++|..+..+| ..+..+++|+ .|++++|.++.+|...
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~--- 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA--- 175 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT---
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh---
Confidence 4555555555555544 222443 44444444 55554442222222 2244444444 4444444444443322
Q ss_pred CCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCC-CCCCCCCcccCCC-CCCCEE
Q 003104 469 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCN-LLEGAIPSDIGSL-FSLEAI 546 (847)
Q Consensus 469 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~-l~~~~lp~~l~~l-~sL~~L 546 (847)
+.. ++|+.|+|++|. +. +..+..+..+ ++|+.|
T Consensus 176 -------------------------------------------~~~-~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 176 -------------------------------------------FNG-TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp -------------------------------------------TTT-CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEE
T ss_pred -------------------------------------------cCC-CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEE
Confidence 222 567777777774 43 1234456777 888888
Q ss_pred ECcCCCCcccchhhhcCCCCCEEeecCCCC
Q 003104 547 DLSGNNFFSLPSSINQLLKLKILCLEKCRN 576 (847)
Q Consensus 547 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 576 (847)
++++|+++.+|.. .+++|+.|+++++..
T Consensus 211 ~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 211 DVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred ECCCCccccCChh--HhccCceeeccCccC
Confidence 8888888888765 677888888887753
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=4.2e-19 Score=187.79 Aligned_cols=199 Identities=19% Similarity=0.148 Sum_probs=113.1
Q ss_pred cCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEE
Q 003104 349 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 428 (847)
Q Consensus 349 ~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 428 (847)
.+++|+.|++++|. ...++.+..+++|++|++++|.... + +.++.+++|++|++++|......+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34445555554443 2233344445555555555543222 2 2455555555555555543333333345566666666
Q ss_pred ecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccc
Q 003104 429 LCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 507 (847)
Q Consensus 429 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 507 (847)
+++|...+..+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|....
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------ 171 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------------------------ 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc------------------------
Confidence 666555444444456666666666666666655543 3566666666666664321
Q ss_pred cCCC--CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC
Q 003104 508 SFPR--FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 508 ~l~~--l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 582 (847)
++. +..+++|+.|++++|++. +..|..+..+++|+.|+|++|.+. +.+++|+.|+++.|.....+|.
T Consensus 172 -~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 172 -LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred -cCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 111 566777777777777754 344555677788888888888665 2355677777777766666664
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.6e-18 Score=186.75 Aligned_cols=223 Identities=20% Similarity=0.241 Sum_probs=149.2
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCcc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCT 385 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~ 385 (847)
+.++..++.++++|..+ +.++++|+|++|+|+.+|.+ +.++++|++|+|++|++...+|. |.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34566677778888776 46889999999999999865 78999999999999988776663 7888888775554444
Q ss_pred ccccc-cccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCc-cccCC-CcccEEEecCccccccC
Q 003104 386 RLLEV-HQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEV-ECLEELDVGGTAIRQIP 462 (847)
Q Consensus 386 ~l~~l-p~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l-~~L~~L~L~~~~i~~lp 462 (847)
.+..+ |..+..+++|++|++++|......+..+....++..|++.++..+..+|. .+..+ ..++.|++++|.++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 45555 56678889999999988765444444455666778888877766666654 34444 35778888888888877
Q ss_pred ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCc-ccCCCC
Q 003104 463 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS-DIGSLF 541 (847)
Q Consensus 463 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~ 541 (847)
.......+|+.|.+.++. ..+ .+|. .+..++
T Consensus 171 ~~~f~~~~L~~l~l~~~n-----------------------------------------------~l~-~i~~~~f~~l~ 202 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNN-----------------------------------------------NLE-ELPNDVFHGAS 202 (350)
T ss_dssp TTSSTTEEEEEEECTTCT-----------------------------------------------TCC-CCCTTTTTTEE
T ss_pred hhhccccchhHHhhccCC-----------------------------------------------ccc-CCCHHHhccCc
Confidence 766555555555554432 222 3332 345555
Q ss_pred CCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCCC
Q 003104 542 SLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 542 sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 582 (847)
+|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.
T Consensus 203 ~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 666666666666666542 355555666555555555554
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3e-18 Score=181.28 Aligned_cols=204 Identities=19% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccC
Q 003104 328 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 407 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~ 407 (847)
++|+.|+++++.++.++ ++..+++|++|++++|.+.. ++.+..+++|++|++++|......+..++.+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 34444444444444432 24455555555555554322 34455555555555555543333333345555555555555
Q ss_pred CCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCc
Q 003104 408 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKI 486 (847)
Q Consensus 408 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~ 486 (847)
|......+..++.+++|++|++++|...+..+..++.+++|+.|++++|.++.+|.. ++.+++|+.|++++|....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--- 195 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS--- 195 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc---
Confidence 544333333345566666666666554444444455666666666666666655443 3556666666666664321
Q ss_pred CcchhhcccccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhcCC
Q 003104 487 LSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLL 564 (847)
Q Consensus 487 ~~~~~l~~l~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~ 564 (847)
..+. +..+++|+.|++++|.+. +.+++|+.|+++.|+++ .+|.+++.++
T Consensus 196 ---------------------~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 196 ---------------------VPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ---------------------CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ---------------------cCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 0111 556667777777777643 33556777777777776 6676666554
Q ss_pred C
Q 003104 565 K 565 (847)
Q Consensus 565 ~ 565 (847)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 4
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=4.4e-18 Score=183.38 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=123.1
Q ss_pred cCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEE
Q 003104 349 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 428 (847)
Q Consensus 349 ~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 428 (847)
.+++|++|++++|.+. .+|.+..+++|++|++++|.. ..++. +..+++|++|++++|. +..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 3445555555554322 234455555555555555432 22333 5555556666665554 33333 355666666666
Q ss_pred ecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCcccc
Q 003104 429 LCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLS 508 (847)
Q Consensus 429 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 508 (847)
+++|...+ ++. +..+++|++|++++|.++.++. +..+++|+.|++++|....
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------- 165 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD------------------------- 165 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------------------
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------------------------
Confidence 66665433 333 6667777777777777776655 6777777777777775322
Q ss_pred CCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCCCCccCC
Q 003104 509 FPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 509 l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
++.+..+++|+.|++++|.+. .++. +..+++|++|+|++|+++.+| .+..+++|+.|++++|+ ++..|
T Consensus 166 ~~~l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 166 LTPLANLSKLTTLKADDNKIS--DISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CGGGTTCTTCCEEECCSSCCC--CCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred ChhhcCCCCCCEEECCCCccC--cChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe-eecCC
Confidence 233667788888888888865 3443 778889999999999998887 48889999999999886 34333
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=9.9e-18 Score=180.58 Aligned_cols=196 Identities=16% Similarity=0.262 Sum_probs=133.1
Q ss_pred CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 326 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
.+++|++|+++++.++.++ ++..+++|++|+|++|.+....+ +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4567777777777777765 56777777777777775544433 7777777777777765 33343 5777777777777
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPK 485 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~ 485 (847)
++|.. ..+|. +..+++|++|++++|...+ ++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 115 ~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-- 187 (308)
T 1h6u_A 115 TSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-- 187 (308)
T ss_dssp TTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCC-CCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc--
Confidence 77653 34444 6677777777777765443 333 6677777777777777777665 7777777777777775422
Q ss_pred cCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch
Q 003104 486 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS 558 (847)
Q Consensus 486 ~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~ 558 (847)
++.+..+++|++|+|++|.+. .++ .+..+++|+.|+|++|.++..|.
T Consensus 188 -----------------------~~~l~~l~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 188 -----------------------ISPLASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -----------------------CGGGGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred -----------------------ChhhcCCCCCCEEEccCCccC--ccc-cccCCCCCCEEEccCCeeecCCe
Confidence 223556677777777777764 343 36777777777777777776664
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.2e-19 Score=198.12 Aligned_cols=230 Identities=18% Similarity=0.208 Sum_probs=137.6
Q ss_pred CCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCC-CCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 328 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~-~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
.+++.|++++|.+...+..+..+++|++|+|++|.+... ++. +..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555555554555666666666666654322 332 556667777777766655566666677777777777
Q ss_pred cCCCCcc--ccCccccCCCCccEEEecCc-cCCCc-CCccccCCC-cccEEEecCcc--c--cccCccccCCCCCCEEEe
Q 003104 406 KDCRNLV--SFPKNVCLMKSLKILCLCGC-LKLEK-LPQDLGEVE-CLEELDVGGTA--I--RQIPPSIVQLVNLKIFSL 476 (847)
Q Consensus 406 ~~c~~l~--~lp~~i~~l~~L~~L~Ls~c-~~l~~-lp~~l~~l~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~L 476 (847)
++|..+. .++..+..+++|++|++++| ...+. ++..+..++ +|++|++++|. + ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 7764343 25555666777777777777 33322 455566777 77777777774 3 356666677788888888
Q ss_pred CCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc
Q 003104 477 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL 556 (847)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l 556 (847)
++|..... ..++.+..+++|++|++++|....+.....++.+++|++|++++| ++.
T Consensus 230 ~~~~~l~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~- 285 (336)
T 2ast_B 230 SDSVMLKN----------------------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD- 285 (336)
T ss_dssp TTCTTCCG----------------------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT-
T ss_pred CCCCcCCH----------------------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH-
Confidence 87763210 112335667788888888885222122235677888888888888 331
Q ss_pred chhhhcC-CCCCEEeecCCCCCccCCC
Q 003104 557 PSSINQL-LKLKILCLEKCRNLKSLPE 582 (847)
Q Consensus 557 p~~i~~l-~~L~~L~L~~c~~L~~lp~ 582 (847)
..+..+ .+|+.|++++|..-+..|.
T Consensus 286 -~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 286 -GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp -TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred -HHHHHHHhhCcceEEecccCccccCC
Confidence 122222 1244555776654444443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=182.97 Aligned_cols=226 Identities=18% Similarity=0.122 Sum_probs=171.3
Q ss_pred CCCCcEEEEccCCCccc--ccc--ccccCcCCCEEEcCCCCCCCCCCC-C--CCCCcCcEeeccCcccccccc----ccc
Q 003104 326 RPEKLFKLNLCNSRIKY--LWK--GIKPLKELKFMNLSHSCNLIRTPD-F--TGVPNLERLNLEGCTRLLEVH----QSV 394 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~--l~~--~~~~l~~L~~L~L~~~~~l~~~p~-~--~~l~~L~~L~L~~c~~l~~lp----~~i 394 (847)
....++.|.+.++.+.. +.. ....+++|++|++++|.+....|. + ..+++|++|++++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34456777777776652 111 122456799999999988777765 5 889999999999988765444 345
Q ss_pred cCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCc--C--CccccCCCcccEEEecCccccccCcc----cc
Q 003104 395 GTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--L--PQDLGEVECLEELDVGGTAIRQIPPS----IV 466 (847)
Q Consensus 395 ~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--l--p~~l~~l~~L~~L~L~~~~i~~lp~~----i~ 466 (847)
..+++|++|++++|......|..+..+++|++|++++|...+. + +..++.+++|++|++++|.++.++.. ++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 6789999999999887776777888999999999999876542 2 23347889999999999999866553 47
Q ss_pred CCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEE
Q 003104 467 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAI 546 (847)
Q Consensus 467 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L 546 (847)
.+++|++|++++|......| ..+..+..+++|++|+|++|++. .+|..+. ++|+.|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p--------------------~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L 277 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN--------------------PSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVL 277 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC--------------------SCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCE
T ss_pred cCCCCCEEECCCCCCCccch--------------------hhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEE
Confidence 78999999999987543111 11122334479999999999976 6787764 899999
Q ss_pred ECcCCCCcccchhhhcCCCCCEEeecCCCC
Q 003104 547 DLSGNNFFSLPSSINQLLKLKILCLEKCRN 576 (847)
Q Consensus 547 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 576 (847)
+|++|+++.+|. +..+++|+.|+|++|+.
T Consensus 278 ~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 278 DLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 999999998875 78899999999999963
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.3e-19 Score=201.90 Aligned_cols=238 Identities=16% Similarity=0.152 Sum_probs=169.7
Q ss_pred CCCCCCC-CCCCcEEEEccCCCccc-----cccccccCcCCCEEEcCCCCCC---CCCCC--------CCCCCcCcEeec
Q 003104 319 NSLPVSF-RPEKLFKLNLCNSRIKY-----LWKGIKPLKELKFMNLSHSCNL---IRTPD--------FTGVPNLERLNL 381 (847)
Q Consensus 319 ~~lp~~~-~~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~L~~~~~l---~~~p~--------~~~l~~L~~L~L 381 (847)
..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. +..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444444 56788899999888874 4455778899999999886432 22332 367889999999
Q ss_pred cCccccc----cccccccCCCCCcEEeccCCCCccc----cCccccCC---------CCccEEEecCccCC-CcCC---c
Q 003104 382 EGCTRLL----EVHQSVGTLKRLILLNLKDCRNLVS----FPKNVCLM---------KSLKILCLCGCLKL-EKLP---Q 440 (847)
Q Consensus 382 ~~c~~l~----~lp~~i~~L~~L~~L~L~~c~~l~~----lp~~i~~l---------~~L~~L~Ls~c~~l-~~lp---~ 440 (847)
++|.... .+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|... ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9887665 4777888889999999998876432 33333334 88999999988765 3444 4
Q ss_pred cccCCCcccEEEecCcccc------ccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CC
Q 003104 441 DLGEVECLEELDVGGTAIR------QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FT 513 (847)
Q Consensus 441 ~l~~l~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~ 513 (847)
.+..+++|++|++++|.++ -+|..+..+++|+.|++++|..... . ...+|. +.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g-----------------~~~l~~~l~ 241 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---G-----------------SSALAIALK 241 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---H-----------------HHHHHHHGG
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---H-----------------HHHHHHHHc
Confidence 5667888999999998887 2344778889999999988863210 0 011222 56
Q ss_pred CCCCCCEEeccCCCCCCC---CCCccc--CCCCCCCEEECcCCCCcc-----cchhh-hcCCCCCEEeecCCCC
Q 003104 514 GLSSLQTLDLSDCNLLEG---AIPSDI--GSLFSLEAIDLSGNNFFS-----LPSSI-NQLLKLKILCLEKCRN 576 (847)
Q Consensus 514 ~l~~L~~L~Ls~~~l~~~---~lp~~l--~~l~sL~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c~~ 576 (847)
.+++|+.|+|++|.+... .+|..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|+.
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 778899999999986531 135555 448899999999999886 88877 6689999999999863
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3.7e-17 Score=169.25 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=120.6
Q ss_pred cCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCc-cccCCCCccEEEecC-ccCCCcCCccccCCCcccEEE
Q 003104 375 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK-NVCLMKSLKILCLCG-CLKLEKLPQDLGEVECLEELD 452 (847)
Q Consensus 375 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~-c~~l~~lp~~l~~l~~L~~L~ 452 (847)
+|++|++++|......+..++.+++|++|++++|..++.+|. .+..+++|++|++++ |...+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 445555554433222223445555555555555443333332 445556666666665 333222234456666666666
Q ss_pred ecCccccccCccccCCCCCC---EEEeCCC-CCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCC-EEeccCCC
Q 003104 453 VGGTAIRQIPPSIVQLVNLK---IFSLHGC-KGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCN 527 (847)
Q Consensus 453 L~~~~i~~lp~~i~~l~~L~---~L~L~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~ 527 (847)
+++|.++.+|. +..+++|+ .|++++| .... .....+.++++|+ .|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~-----------------------i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS-----------------------IPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE-----------------------ECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhh-----------------------cCcccccchhcceeEEEcCCCC
Confidence 66666666665 66666666 7777766 3211 0011267788899 99999888
Q ss_pred CCCCCCCcccCCCCCCCEEECcCC-CCcccch-hhhcC-CCCCEEeecCCCCCccCCCC-CCCcceeeccCCccc
Q 003104 528 LLEGAIPSDIGSLFSLEAIDLSGN-NFFSLPS-SINQL-LKLKILCLEKCRNLKSLPEL-PPEIVFVGAEDCTSL 598 (847)
Q Consensus 528 l~~~~lp~~l~~l~sL~~L~Ls~n-~l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp~l-p~sL~~L~i~~c~~L 598 (847)
+. .+|......++|+.|+|++| .++.+|. .+..+ ++|+.|++++|+ ++.+|.. .++|+.|.+.++..|
T Consensus 168 l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 168 FT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred Cc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 65 56665545589999999999 4998864 57889 999999999985 5666643 467777777776543
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=6.3e-20 Score=216.47 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=135.6
Q ss_pred cCCCCCcEEEEcCcccCCCcc----c-cCCCcceEEecCCCC---CCCCCCC-CCCCcEEEEccCCCccc-----ccccc
Q 003104 282 STMSNLRLLEINNLYSSGNLE----Y-LSNNLRYLKWHEYPF---NSLPVSF-RPEKLFKLNLCNSRIKY-----LWKGI 347 (847)
Q Consensus 282 ~~~~~Lr~L~l~~~~l~~~~~----~-~~~~L~~L~~~~~~~---~~lp~~~-~~~~L~~L~L~~~~l~~-----l~~~~ 347 (847)
..+++|+.|+++++.+++... . .+.+|++|++.++.. ..++... .+++|++|+|++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 378899999999887765321 1 234599999888762 1122222 56789999999887653 33345
Q ss_pred ccCcCCCEEEcCCCCCCCCC----CC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCc---cccCcccc
Q 003104 348 KPLKELKFMNLSHSCNLIRT----PD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL---VSFPKNVC 419 (847)
Q Consensus 348 ~~l~~L~~L~L~~~~~l~~~----p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l---~~lp~~i~ 419 (847)
..+++|++|++++|...... +. +.++++|++|++++|.. ..+|..+..+++|+.|+++.+... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67888999999888665221 21 45688999999998764 447778888889999988764333 23444567
Q ss_pred CCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc--ccCccccCCCCCCEEEeCC
Q 003104 420 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHG 478 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~ 478 (847)
.+++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|+.|++++
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC
Confidence 7888888888774 35567777778888888888888766 3334467788888888873
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.1e-19 Score=212.04 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=117.1
Q ss_pred cCCCCCcEEEEcCcccCCC-------ccccCCCcceEEecCCCCCCCC-----CCC-CCCCcEEEEccCCCccccccccc
Q 003104 282 STMSNLRLLEINNLYSSGN-------LEYLSNNLRYLKWHEYPFNSLP-----VSF-RPEKLFKLNLCNSRIKYLWKGIK 348 (847)
Q Consensus 282 ~~~~~Lr~L~l~~~~l~~~-------~~~~~~~L~~L~~~~~~~~~lp-----~~~-~~~~L~~L~L~~~~l~~l~~~~~ 348 (847)
.++++|+.|+++++.+.+. +.....+|+.|++.++.+..+. ..+ .+++|++|++++|.+..++..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 4677788888877776543 1223457777777777665322 222 46777777777777777777777
Q ss_pred cCcCCCEEEcCCCCCCCC----CCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccc-cCccccCCCC
Q 003104 349 PLKELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS-FPKNVCLMKS 423 (847)
Q Consensus 349 ~l~~L~~L~L~~~~~l~~----~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~-lp~~i~~l~~ 423 (847)
.+++|+.|+++....... ...+..+++|+.|+++++ ....+|..+..+++|++|++++|..... ++..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 777777777764322211 123566677777777664 3455666666777777777777662222 2223456677
Q ss_pred ccEEEecCccCCCcCCccccCCCcccEEEec-----------Ccccc--ccCccccCCCCCCEEEeCCC
Q 003104 424 LKILCLCGCLKLEKLPQDLGEVECLEELDVG-----------GTAIR--QIPPSIVQLVNLKIFSLHGC 479 (847)
Q Consensus 424 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~-----------~~~i~--~lp~~i~~l~~L~~L~L~~~ 479 (847)
|++|+++++...+.++.....+++|++|+++ .+.++ .++.....+++|++|++..+
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 7777776433223334444556667777777 24444 23333345667777777433
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5e-16 Score=162.04 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=140.7
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCc
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 384 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c 384 (847)
..+.++..++.+..+|..+. .+|+.|++++|.+..++. .+..+++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45677777888888887664 588899999999887765 588899999999999887776665 788999999999998
Q ss_pred cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-
Q 003104 385 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP- 463 (847)
Q Consensus 385 ~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~- 463 (847)
......+..+..+++|++|++++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|.++.+|.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 7665555677889999999999976544334446789999999999987665555578899999999999999997776
Q ss_pred cccCCCCCCEEEeCCCCCC
Q 003104 464 SIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 464 ~i~~l~~L~~L~L~~~~~~ 482 (847)
.+..+++|+.|++++|...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 6788999999999998743
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.8e-19 Score=211.01 Aligned_cols=196 Identities=16% Similarity=0.137 Sum_probs=119.1
Q ss_pred hcCCCCCcEEEEcCcccCCCcc----ccCCCcceEEecCC-CCCC--CCCCC-CCCCcEEEEccCCCccc-----ccccc
Q 003104 281 FSTMSNLRLLEINNLYSSGNLE----YLSNNLRYLKWHEY-PFNS--LPVSF-RPEKLFKLNLCNSRIKY-----LWKGI 347 (847)
Q Consensus 281 f~~~~~Lr~L~l~~~~l~~~~~----~~~~~L~~L~~~~~-~~~~--lp~~~-~~~~L~~L~L~~~~l~~-----l~~~~ 347 (847)
+..+++|+.|+++++.+++... ...++|+.|++.++ .+.. ++... .+++|++|++++|.+.. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4567889999998887765321 12468888888877 3332 33333 57788899988887653 33334
Q ss_pred ccCcCCCEEEcCCCCCCCCCCC------CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC------ccccC
Q 003104 348 KPLKELKFMNLSHSCNLIRTPD------FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN------LVSFP 415 (847)
Q Consensus 348 ~~l~~L~~L~L~~~~~l~~~p~------~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~------l~~lp 415 (847)
..+++|+.|++++|. ..++. +..+++|++|++++|.....++..+..+++|+.|+++.|.. ...++
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 467788999998875 12221 23468889999988876667777888888888888766532 12233
Q ss_pred ccccCCCCccEE-EecCccCCCcCCccccCCCcccEEEecCcccc--ccCccccCCCCCCEEEeCCC
Q 003104 416 KNVCLMKSLKIL-CLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHGC 479 (847)
Q Consensus 416 ~~i~~l~~L~~L-~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~ 479 (847)
..+.++++|+.| .+.+. ....+|..+..+++|++|++++|.++ .++..+..+++|+.|++++|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 344555555555 22221 11233444445555666666665544 12223445566666666554
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=7.4e-16 Score=160.73 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=122.0
Q ss_pred CCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEecc
Q 003104 328 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 406 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~ 406 (847)
...++++++++.++.+|.++. ++|+.|+|++|.+....+. +.++++|++|+|++|......+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998765 6899999999987776664 8889999999999987766666678889999999999
Q ss_pred CCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCCC
Q 003104 407 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 407 ~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~ 481 (847)
+|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 877655455566788889999998887665555557888888888888888887776 577888888888888764
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=1.4e-18 Score=193.53 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=167.2
Q ss_pred CcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCC-----CCCCCCcCcEeeccCcc---ccccccccc------
Q 003104 329 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-----DFTGVPNLERLNLEGCT---RLLEVHQSV------ 394 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p-----~~~~l~~L~~L~L~~c~---~l~~lp~~i------ 394 (847)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|. ....+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444445555666788888899999999999997665422 37789999999999873 223445444
Q ss_pred -cCCCCCcEEeccCCCCcc----ccCccccCCCCccEEEecCccCCCcC----CccccCC---------CcccEEEecCc
Q 003104 395 -GTLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEKL----PQDLGEV---------ECLEELDVGGT 456 (847)
Q Consensus 395 -~~L~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~~l----p~~l~~l---------~~L~~L~L~~~ 456 (847)
..+++|++|+|++|.... .+|..+..+++|++|++++|...... +..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 788999999999987665 47777888999999999998764332 3333344 88999999999
Q ss_pred ccc--ccC---ccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCC-CCCCCCCCCEEeccCCCCCC
Q 003104 457 AIR--QIP---PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLE 530 (847)
Q Consensus 457 ~i~--~lp---~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~ 530 (847)
.++ .+| ..+..+++|++|++++|..... ... ...+ .+..+++|+.|+|++|.+..
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g~~----------------~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIE----------------HLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHH----------------HHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---HHH----------------HHHHHHhhcCCCccEEECcCCCCCc
Confidence 886 444 4667888999999998864310 000 0123 36678899999999998631
Q ss_pred ---CCCCcccCCCCCCCEEECcCCCCcc-----cchhhhc--CCCCCEEeecCCC
Q 003104 531 ---GAIPSDIGSLFSLEAIDLSGNNFFS-----LPSSINQ--LLKLKILCLEKCR 575 (847)
Q Consensus 531 ---~~lp~~l~~l~sL~~L~Ls~n~l~~-----lp~~i~~--l~~L~~L~L~~c~ 575 (847)
..+|..+..+++|++|+|++|.++. +|..+.. +++|+.|+|++|.
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 2567778888999999999998873 4666644 8999999999985
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=3.4e-16 Score=171.86 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=147.0
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccc-cccCCCCCcEEeccCCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQ-SVGTLKRLILLNLKDCR 409 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~L~~c~ 409 (847)
+++.++++++++|.++ .+++++|+|++|++....++ |.++++|++|+|++|...+.+|. .+.++++|..+...
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~--- 87 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE--- 87 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE---
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc---
Confidence 4566666777776655 24566666666654433332 55566666666665554444432 23444444332222
Q ss_pred CccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCcCc
Q 003104 410 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILS 488 (847)
Q Consensus 410 ~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~ 488 (847)
++|......|..+..+++|++|++++|.++.+|.. +....++..|++.++.....
T Consensus 88 --------------------~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---- 143 (350)
T 4ay9_X 88 --------------------KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---- 143 (350)
T ss_dssp --------------------EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE----
T ss_pred --------------------cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc----
Confidence 22222222244455555666666666666554432 23444555666654432210
Q ss_pred chhhcccccCCCCCCCccccCCCCCCC-CCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcC-CCCcccch-hhhcCCC
Q 003104 489 SNFFLSLLLPNKNSDSMCLSFPRFTGL-SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSG-NNFFSLPS-SINQLLK 565 (847)
Q Consensus 489 ~~~l~~l~l~~~~~~~~~~~l~~l~~l-~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~-n~l~~lp~-~i~~l~~ 565 (847)
.....+..+ ..++.|+|++|++. .+|.......+|+.|++++ |.++.+|. .+..+++
T Consensus 144 ------------------l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 144 ------------------IERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp ------------------ECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred ------------------ccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 001113444 36889999999976 5887777788999999985 67889986 4699999
Q ss_pred CCEEeecCCCCCccCCC-CCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhh
Q 003104 566 LKILCLEKCRNLKSLPE-LPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 632 (847)
Q Consensus 566 L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~ 632 (847)
|+.|+|++| .++.+|. ...+|+.|.+.+|.+|+.++. +.+.++|+.+++.++.
T Consensus 204 L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-------------l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 204 PVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-------------LEKLVALMEASLTYPS 257 (350)
T ss_dssp CSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-------------TTTCCSCCEEECSCHH
T ss_pred cchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-------------chhCcChhhCcCCCCc
Confidence 999999999 5788875 458899999999999888874 4556777777776543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=9.8e-17 Score=173.02 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=135.5
Q ss_pred cCCCEEEcCCCCCCCC----CCCCCCCCcCcEeeccCccccccccccc--cCCCCCcEEeccCCCCccccC----ccccC
Q 003104 351 KELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSV--GTLKRLILLNLKDCRNLVSFP----KNVCL 420 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~----~p~~~~l~~L~~L~L~~c~~l~~lp~~i--~~L~~L~~L~L~~c~~l~~lp----~~i~~ 420 (847)
..++.+.+.++..... +..+..+++|++|++++|......|..+ ..+++|++|++++|......| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777776543211 1112234668888888887777777777 778888888888877665444 23346
Q ss_pred CCCccEEEecCccCCCcCCccccCCCcccEEEecCccccc---cC--ccccCCCCCCEEEeCCCCCCCCCcCcchhhccc
Q 003104 421 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ---IP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSL 495 (847)
Q Consensus 421 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~---lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l 495 (847)
+++|++|++++|...+..|..++.+++|++|++++|.+.. ++ ..++.+++|++|++++|......
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------- 213 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---------- 213 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----------
Confidence 7788888888887766666777788888888888887652 32 23367778888888877642100
Q ss_pred ccCCCCCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCC---CCCCEEECcCCCCcccchhhhcCCCCCEEee
Q 003104 496 LLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSL---FSLEAIDLSGNNFFSLPSSINQLLKLKILCL 571 (847)
Q Consensus 496 ~l~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l---~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 571 (847)
..... +..+++|++|+|++|.+.. ..|..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|
T Consensus 214 -----------~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 214 -----------GVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL 279 (310)
T ss_dssp -----------HHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred -----------HHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence 00000 3456778888888887643 446666555 588888888888887777664 68888888
Q ss_pred cCCCCCccCC
Q 003104 572 EKCRNLKSLP 581 (847)
Q Consensus 572 ~~c~~L~~lp 581 (847)
++|+ ++.+|
T Consensus 280 s~N~-l~~~~ 288 (310)
T 4glp_A 280 SSNR-LNRAP 288 (310)
T ss_dssp CSCC-CCSCC
T ss_pred CCCc-CCCCc
Confidence 8874 34443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=8.3e-16 Score=178.09 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=93.5
Q ss_pred CcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCC
Q 003104 329 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 408 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c 408 (847)
+|+.|++++|+++.+|..+ +++|++|+|++|.+. .+| ..+++|++|++++|.... +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 3444444444444444433 144444444444333 233 334444444444443222 433 332 4555555554
Q ss_pred CCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCc
Q 003104 409 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILS 488 (847)
Q Consensus 409 ~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~ 488 (847)
.. ..+|. .+++|++|++++|...+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|....
T Consensus 131 ~l-~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~----- 194 (571)
T 3cvr_A 131 QL-TMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES----- 194 (571)
T ss_dssp CC-SCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS-----
T ss_pred cC-CCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc-----
Confidence 32 22443 34555555555544332 443 34455555555555555555 33 555555555554221
Q ss_pred chhhcccccCCCCCCCccccCCCC-----CCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc-ccchhhhc
Q 003104 489 SNFFLSLLLPNKNSDSMCLSFPRF-----TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQ 562 (847)
Q Consensus 489 ~~~l~~l~l~~~~~~~~~~~l~~l-----~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~ 562 (847)
+|.+ ...+.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 195 --------------------lp~~~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 --------------------LPAVPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --------------------CCCCC--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --------------------hhhHHHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 1111 11233477777777765 57777777778888888888776 56666655
Q ss_pred C
Q 003104 563 L 563 (847)
Q Consensus 563 l 563 (847)
+
T Consensus 253 l 253 (571)
T 3cvr_A 253 Q 253 (571)
T ss_dssp H
T ss_pred h
Confidence 4
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=8.7e-18 Score=185.48 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=68.4
Q ss_pred CcEEEEccCCCcccc-ccccccC-----cCCCEEEcCCCCCCCCCCC-----CCCC-CcCcEeeccCccccccccccc--
Q 003104 329 KLFKLNLCNSRIKYL-WKGIKPL-----KELKFMNLSHSCNLIRTPD-----FTGV-PNLERLNLEGCTRLLEVHQSV-- 394 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l-~~~~~~l-----~~L~~L~L~~~~~l~~~p~-----~~~l-~~L~~L~L~~c~~l~~lp~~i-- 394 (847)
+|++|+|++|.+... +..+..+ ++|++|+|++|.+....+. +..+ ++|++|++++|......+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 555555555555533 2223222 5555555555544433332 2233 455555555554333222222
Q ss_pred --cC-CCCCcEEeccCCCCcc----ccCccccCCC-CccEEEecCccCCCcCCccc----cCC-CcccEEEecCccccc-
Q 003104 395 --GT-LKRLILLNLKDCRNLV----SFPKNVCLMK-SLKILCLCGCLKLEKLPQDL----GEV-ECLEELDVGGTAIRQ- 460 (847)
Q Consensus 395 --~~-L~~L~~L~L~~c~~l~----~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l----~~l-~~L~~L~L~~~~i~~- 460 (847)
.. .++|++|++++|.... .++..+..++ +|++|++++|...+..+..+ ..+ ++|++|++++|.++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 22 2355555555554332 2222223333 55555555554433333222 222 355555555555553
Q ss_pred ----cCccccC-CCCCCEEEeCCCC
Q 003104 461 ----IPPSIVQ-LVNLKIFSLHGCK 480 (847)
Q Consensus 461 ----lp~~i~~-l~~L~~L~L~~~~ 480 (847)
++..+.. .++|++|++++|.
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCC
Confidence 4444433 2355555555554
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=1.4e-17 Score=183.93 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=143.0
Q ss_pred CCCcEEEEccCCCccccc-----cccccCc-CCCEEEcCCCCCCCCCCC-CCCC-----CcCcEeeccCccccccccccc
Q 003104 327 PEKLFKLNLCNSRIKYLW-----KGIKPLK-ELKFMNLSHSCNLIRTPD-FTGV-----PNLERLNLEGCTRLLEVHQSV 394 (847)
Q Consensus 327 ~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~L~~~~~l~~~p~-~~~l-----~~L~~L~L~~c~~l~~lp~~i 394 (847)
+.+|++|++++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++|++|+|++|......+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 445888888888887665 4567777 888888888866555442 4333 788888888887555544433
Q ss_pred ----cCC-CCCcEEeccCCCCccccCccc----cC-CCCccEEEecCccCCC----cCCccccCCC-cccEEEecCcccc
Q 003104 395 ----GTL-KRLILLNLKDCRNLVSFPKNV----CL-MKSLKILCLCGCLKLE----KLPQDLGEVE-CLEELDVGGTAIR 459 (847)
Q Consensus 395 ----~~L-~~L~~L~L~~c~~l~~lp~~i----~~-l~~L~~L~Ls~c~~l~----~lp~~l~~l~-~L~~L~L~~~~i~ 459 (847)
..+ ++|++|++++|......+..+ .. .++|++|++++|.... .++..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 334 788888888877544333222 23 3578888888876653 2333444454 7888888888877
Q ss_pred ccCc-----cccCC-CCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCC-CCC-CCCCCEEeccCCCCCCC
Q 003104 460 QIPP-----SIVQL-VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTG-LSSLQTLDLSDCNLLEG 531 (847)
Q Consensus 460 ~lp~-----~i~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~-l~~-l~~L~~L~Ls~~~l~~~ 531 (847)
..+. .+..+ ++|+.|++++|....... ..++. +.. .++|++|+|++|.+.+.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSY--------------------AELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--------------------HHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--------------------HHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 4432 34445 488888888776321000 01111 222 35788888888876531
Q ss_pred C---CCcccCCCCCCCEEECcCCCCc--------ccchhhhcCCCCCEEeecCCC
Q 003104 532 A---IPSDIGSLFSLEAIDLSGNNFF--------SLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 532 ~---lp~~l~~l~sL~~L~Ls~n~l~--------~lp~~i~~l~~L~~L~L~~c~ 575 (847)
. +...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1 1234566777888888888633 333455667777778887775
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.3e-16 Score=156.14 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=122.8
Q ss_pred CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 326 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
.+++|+.|++++|.++.+| ++..+++|++|++++| ....++.+..+++|++|++++|......+..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3457778888888888777 6888888888888888 4455567888888888888888777777888888888999999
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 481 (847)
++|......|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 8887776677778888899999998887666676 5788889999999999888877 788889999999988863
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=1.9e-15 Score=175.14 Aligned_cols=178 Identities=21% Similarity=0.236 Sum_probs=149.0
Q ss_pred CCcEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCC
Q 003104 286 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI 365 (847)
Q Consensus 286 ~Lr~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~ 365 (847)
+|+.|++++|.+.+.....+.+|++|++.+|.+..+| -.+++|++|++++|+++.+|. +.. +|++|+|++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 8999999999988755556789999999999999999 347899999999999999988 655 99999999997666
Q ss_pred CCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCC
Q 003104 366 RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEV 445 (847)
Q Consensus 366 ~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 445 (847)
+|. .+++|++|+|++|... .+|. .+++|++|++++|. +..+|. +. ++|++|++++|... .+|. +..
T Consensus 135 -lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 135 -LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp -CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC--
T ss_pred -CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCC-chhh-HHH-
Confidence 665 7899999999998754 4776 67899999999986 445887 65 89999999998654 7777 554
Q ss_pred Ccc-------cEEEecCccccccCccccCCCCCCEEEeCCCCCCC
Q 003104 446 ECL-------EELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 446 ~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 483 (847)
+| +.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 67 99999999999999999999999999999997554
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.1e-18 Score=205.84 Aligned_cols=360 Identities=16% Similarity=0.107 Sum_probs=212.2
Q ss_pred CcEEEEEecCCCccccCchhhc-CCCCCcEEEEcCc-ccCCC-cc---ccCCCcceEEecCCCCCC-----CCCCC-CCC
Q 003104 261 DAVEAIIVDVPEMTELEAKSFS-TMSNLRLLEINNL-YSSGN-LE---YLSNNLRYLKWHEYPFNS-----LPVSF-RPE 328 (847)
Q Consensus 261 ~~v~~l~l~~~~~~~l~~~~f~-~~~~Lr~L~l~~~-~l~~~-~~---~~~~~L~~L~~~~~~~~~-----lp~~~-~~~ 328 (847)
..++.+.+..+.........+. .+++|+.|+++++ .+... ++ ...++|+.|++.++.+.. ++... .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677788877644333334443 6889999999887 33321 22 235689999998887543 33333 677
Q ss_pred CcEEEEccCCC--cc--ccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccc------cccccccccCC
Q 003104 329 KLFKLNLCNSR--IK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR------LLEVHQSVGTL 397 (847)
Q Consensus 329 ~L~~L~L~~~~--l~--~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~------l~~lp~~i~~L 397 (847)
+|++|+++++. +. .++.-...+++|++|++++|.....++. +..+++|++|++.+|.. +..++..+.++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 99999999886 22 2333345679999999998854444443 56788999999776542 33455677888
Q ss_pred CCCcEE-eccCCCCccccCccccCCCCccEEEecCccCCCc-CCccccCCCcccEEEecCcccc--ccCccccCCCCCCE
Q 003104 398 KRLILL-NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKI 473 (847)
Q Consensus 398 ~~L~~L-~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~ 473 (847)
++|+.| .+.+. ....+|..+..+++|++|++++|..... ++..+..+++|++|++++| +. .++.....+++|+.
T Consensus 265 ~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 888888 44432 2344555555678888888888873322 2333567888888888887 43 23333345788888
Q ss_pred EEeCCCC--------CCCCCcC-cc-hhhcccccCCCCCCCcc-ccCCCC-CCCCCCCEEecc-----CCCCCCC-----
Q 003104 474 FSLHGCK--------GQPPKIL-SS-NFFLSLLLPNKNSDSMC-LSFPRF-TGLSSLQTLDLS-----DCNLLEG----- 531 (847)
Q Consensus 474 L~L~~~~--------~~~~~~~-~~-~~l~~l~l~~~~~~~~~-~~l~~l-~~l~~L~~L~Ls-----~~~l~~~----- 531 (847)
|++.+|. ....... .. ...+.+......++.+. ..+..+ ..+++|+.|+++ +|+..++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 8885432 1110000 00 01122211111111111 111112 257899999998 3333321
Q ss_pred CCCcccCCCCCCCEEECcCCCCc-ccchhhhc-CCCCCEEeecCCCCCcc-CCCC---CCCcceeeccCCcccccccccc
Q 003104 532 AIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQ-LLKLKILCLEKCRNLKS-LPEL---PPEIVFVGAEDCTSLETISAFA 605 (847)
Q Consensus 532 ~lp~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~-l~~L~~L~L~~c~~L~~-lp~l---p~sL~~L~i~~c~~L~~l~~~~ 605 (847)
.++..+..+++|+.|+|++ +++ ..+..+.. +++|+.|+|++|..... ++.+ .++|+.|++++|+- .......
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~ 500 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLA 500 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHH
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHH
Confidence 1222356788999999987 565 33344544 89999999999873211 1111 35677777777764 2211110
Q ss_pred ccCCCCCceEEEccCCCcchhhhhhhhHH
Q 003104 606 KLSRSPNIALNFLNCFKLVEDQVSKDNLA 634 (847)
Q Consensus 606 ~~~~~~~~~~~~~nc~~L~~l~~~~n~~~ 634 (847)
.+.+|++|+.+++++|+++
T Consensus 501 ----------~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 501 ----------NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ----------TGGGGGGSSEEEEESSCCB
T ss_pred ----------HHHhCCCCCEEeeeCCCCC
Confidence 1245677777777766553
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.9e-15 Score=159.83 Aligned_cols=169 Identities=23% Similarity=0.274 Sum_probs=104.8
Q ss_pred ccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEE
Q 003104 348 KPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKIL 427 (847)
Q Consensus 348 ~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 427 (847)
..+++|+.|++++|.+ ..++.+..+++|++|++++|... .++. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~-l~~l~~L~~L 95 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLT-------------------------DIKP-LANLKNLGWL 95 (291)
T ss_dssp HHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-------------------------CCGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccC-------------------------CCcc-cccCCCCCEE
Confidence 3455666666665533 23344555555555555554322 2222 4444555555
Q ss_pred EecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccc
Q 003104 428 CLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 507 (847)
Q Consensus 428 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 507 (847)
++++|...+ +| .+..+++|++|++++|.++.+ ..+..+++|+.|++++|....
T Consensus 96 ~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~------------------------ 148 (291)
T 1h6t_A 96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD------------------------ 148 (291)
T ss_dssp ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC------------------------
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc------------------------
Confidence 555443322 22 255566666666666666655 346666777777777665322
Q ss_pred cCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 508 SFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 508 ~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
++.+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.++.+| .+..+++|+.|++++|+
T Consensus 149 -~~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 -ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred -chhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCc
Confidence 2335667788888888887653 443 888899999999999998887 48889999999999885
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5e-15 Score=149.64 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=77.5
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~ 410 (847)
.++.+++.++.+|.++ .++|++|++++|.+....+. +.++++|++|++++|......+..+..+++|++|++++|..
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3445555555555443 24566666666654443333 45566666666666543322223345566666666666543
Q ss_pred ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCC
Q 003104 411 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGC 479 (847)
Q Consensus 411 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 479 (847)
....+..+..+++|++|++++|...+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 322223345566666666666554443344456666666666666666655543 344555555555554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.7e-15 Score=157.56 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=125.1
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccc
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTR 386 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~ 386 (847)
+|+.|++.++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+. .+|.+..+++|++|++++|..
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECTTSCC
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChhhccCCCCCEEECCCCcC
Confidence 344444445555555543367788888888888888776 888888888888888644 456688888888888888764
Q ss_pred cccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcccc
Q 003104 387 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIV 466 (847)
Q Consensus 387 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~ 466 (847)
.. + +.+..+++|+.|++++|... .+ ..+..+++|++|++++|...+..| +..+++|+.|++++|.++.+|. +.
T Consensus 125 ~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~ 197 (291)
T 1h6t_A 125 SD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LA 197 (291)
T ss_dssp CC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred CC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hc
Confidence 43 4 46888888999999887644 34 457788899999998887655433 8888999999999999988864 88
Q ss_pred CCCCCCEEEeCCCC
Q 003104 467 QLVNLKIFSLHGCK 480 (847)
Q Consensus 467 ~l~~L~~L~L~~~~ 480 (847)
.+++|+.|++++|.
T Consensus 198 ~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCSEEEEEEEE
T ss_pred cCCCCCEEECcCCc
Confidence 89999999998876
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.5e-14 Score=146.19 Aligned_cols=175 Identities=17% Similarity=0.080 Sum_probs=116.1
Q ss_pred EEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCC--CCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCC
Q 003104 289 LLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLI 365 (847)
Q Consensus 289 ~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~ 365 (847)
.++++++.+.......+.+|++|++.++.+..+|... .+++|++|++++|+++.++.. +..+++|++|+|++|.+..
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 4455555555544455567777777777777776643 677788888888877777654 5677788888888776665
Q ss_pred CCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccC
Q 003104 366 RTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 444 (847)
Q Consensus 366 ~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~ 444 (847)
..+. +.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|... +.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~ 163 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CT 163 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cC
Confidence 4444 677778888888777654444444677777888888776544333334667777888887777443 34
Q ss_pred CCcccEEEecCcccc-ccCccccCCCC
Q 003104 445 VECLEELDVGGTAIR-QIPPSIVQLVN 470 (847)
Q Consensus 445 l~~L~~L~L~~~~i~-~lp~~i~~l~~ 470 (847)
+++|+.|++..|.++ .+|.+++.++.
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCHHHHHHHHHhCCceeeccCccccC
Confidence 456777777777777 67776665543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2.3e-15 Score=176.30 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=16.2
Q ss_pred CCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCc
Q 003104 513 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 554 (847)
Q Consensus 513 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~ 554 (847)
..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+.
T Consensus 172 ~~l~~L~~L~Ls~N~i~--~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHIS--DLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCTTCCEEECCSSCCC--BCG-GGTTCTTCSEEECCSEEEE
T ss_pred ccCCCCCEEECcCCCCC--CCh-HHccCCCCCEEEccCCcCc
Confidence 33444444444444432 122 2444444444444444443
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.8e-17 Score=192.86 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=123.1
Q ss_pred CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEe-
Q 003104 326 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN- 404 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~- 404 (847)
..++|+.|+|++|.++.+|+.++++++|+.|++++|..+...| . .+..+...+..|..++++++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~-ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------L-LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------H-HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------H-HHHhcccccCCHHHHHHHHhcccCcc
Confidence 4567777777777777777777777777777775542111000 0 0111223445566677777777776
Q ss_pred ccCCCCccccCc------ccc--CCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEe
Q 003104 405 LKDCRNLVSFPK------NVC--LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSL 476 (847)
Q Consensus 405 L~~c~~l~~lp~------~i~--~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 476 (847)
++.+ ....++. .+. ....|+.|++++|... .+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++
T Consensus 417 l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 3332 1111111 000 0124777777776544 3565 77777777777777777777777777777777777
Q ss_pred CCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCC-CcccCCCCCCCEEECcCCCCcc
Q 003104 477 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFS 555 (847)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~Ls~n~l~~ 555 (847)
++|.... +|.+..+++|+.|+|++|++.. .. |..++.+++|+.|+|++|.++.
T Consensus 494 s~N~l~~-------------------------lp~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 494 SDNALEN-------------------------VDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCCC-------------------------CGGGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCC-------------------------CcccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7765321 3445666677777777776542 22 6667777777777777777765
Q ss_pred cchhh----hcCCCCCEEee
Q 003104 556 LPSSI----NQLLKLKILCL 571 (847)
Q Consensus 556 lp~~i----~~l~~L~~L~L 571 (847)
+|..+ ..+++|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 55432 33666666653
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=3.4e-14 Score=166.39 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=138.2
Q ss_pred CCcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcc
Q 003104 306 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 306 ~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~ 385 (847)
..|+.|++.++.+..+|....+++|+.|+|++|.+..++. +..+++|+.|+|++|.+. .+|.+..+++|++|+|++|.
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCTTSTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CChhhccCCCCCEEEecCCC
Confidence 4566666677777777754478899999999999998876 889999999999999654 56789999999999999987
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccc
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSI 465 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 465 (847)
... + +.+..|++|+.|+|++|... .+ ..++.+++|+.|+|++|...+..| +..+++|+.|+|++|.++.+| .+
T Consensus 121 l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 121 ISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCC-C-ccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 543 4 56889999999999998644 44 458899999999999987766555 889999999999999999885 58
Q ss_pred cCCCCCCEEEeCCCCC
Q 003104 466 VQLVNLKIFSLHGCKG 481 (847)
Q Consensus 466 ~~l~~L~~L~L~~~~~ 481 (847)
..+++|+.|+|++|..
T Consensus 194 ~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 194 AGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCTTCSEEECCSEEE
T ss_pred ccCCCCCEEEccCCcC
Confidence 8999999999999864
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.1e-14 Score=143.61 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=70.1
Q ss_pred eEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc--ccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccc
Q 003104 310 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTR 386 (847)
Q Consensus 310 ~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~ 386 (847)
.+++.++.++.+|..+ +..+++|++++|.++.++. .+..+++|++|+|++|.+....+ .|.++++|++|+|++|..
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4444445555555433 2344555565555555522 24555555555555554444333 255555555555555444
Q ss_pred cccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccc
Q 003104 387 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAI 458 (847)
Q Consensus 387 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 458 (847)
....+..+..+++|++|+|++|......|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 333333344455555555554443333344444444444444444444333344444444444444444443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.1e-14 Score=142.52 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=118.4
Q ss_pred CcceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCC-CCCCCCCCcCcEeeccCcc
Q 003104 307 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGCT 385 (847)
Q Consensus 307 ~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~-~p~~~~l~~L~~L~L~~c~ 385 (847)
+|+.|++.++.+..+|....+++|++|++++|.++.++ .+..+++|++|++++|.+... ++.++++++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 34444444555555563336778999999999877664 688899999999999987663 4568999999999999998
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
.....|..++.+++|++|++++|..++.+| .+..+++|++|++++|...+ ++ .+..+++|+.|++++|.+.
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 887788899999999999999988677787 58899999999999987554 55 6888999999999999875
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=143.40 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=131.9
Q ss_pred EEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCC
Q 003104 331 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 408 (847)
Q Consensus 331 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c 408 (847)
+.++++++.++.+|..+. ..+++|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 489999999999998764 4679999999987776553 889999999999998866655668999999999999998
Q ss_pred CCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccccc-CccccCCCCCCEEEeCCCCCC
Q 003104 409 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 409 ~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~ 482 (847)
......|..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 87666666788999999999999998888889999999999999999999977 778899999999999999743
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=7.8e-14 Score=142.20 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=72.0
Q ss_pred EEccCCCccccccccccCcCCCEEEcCCCCCCCCCC-CCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCc
Q 003104 333 LNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL 411 (847)
Q Consensus 333 L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l 411 (847)
++++++.++.+|..+. ++|+.|+|++|.+....+ .|.++++|++|+|++|......|..+..+++|++|+|++|...
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3333444444443322 344444444443333333 2444444555555444433333445555555555555554322
Q ss_pred cccCc-cccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCC
Q 003104 412 VSFPK-NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 412 ~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 480 (847)
.+|. .+..+++|++|++++|...+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 94 -~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 3332 23455566666666655555555555666666666666666665544 35556666666666654
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=8.5e-14 Score=141.91 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=131.0
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 386 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 386 (847)
+.++..++.+..+|..+. ++|+.|++++|+++.++. .+..+++|++|+|++|++....|+ |.++++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 567888999999998765 799999999999999876 689999999999999988777664 99999999999999875
Q ss_pred cccccc-cccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc
Q 003104 387 LLEVHQ-SVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 387 l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
. .+|. .+..+++|++|+|++|......|..+..+++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5 5554 4689999999999999877777788999999999999999887777777999999999999999876
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.8e-14 Score=151.30 Aligned_cols=166 Identities=22% Similarity=0.257 Sum_probs=115.0
Q ss_pred CCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEE
Q 003104 373 VPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELD 452 (847)
Q Consensus 373 l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 452 (847)
+.++..++++++. +..++ .+..+++|+.|++++|. +..+| .+..+++|++|++++|...+ +|. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 4455666666643 33443 56667777777777764 44555 46677777777777765443 343 77777788888
Q ss_pred ecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCC
Q 003104 453 VGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA 532 (847)
Q Consensus 453 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ 532 (847)
+++|.++.+|.... ++|+.|++++|.... ++.+..+++|+.|++++|++. .
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-------------------------~~~l~~l~~L~~L~Ls~N~i~--~ 142 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRD-------------------------TDSLIHLKNLEILSIRNNKLK--S 142 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSB-------------------------SGGGTTCTTCCEEECTTSCCC--B
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCC-------------------------ChhhcCcccccEEECCCCcCC--C
Confidence 88887777765333 778888887775322 334667788888888888865 3
Q ss_pred CCcccCCCCCCCEEECcCCCCcccchhhhcCCCCCEEeecCCC
Q 003104 533 IPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 533 lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 575 (847)
++ .++.+++|+.|+|++|.++.+ ..+..+++|+.|++++|+
T Consensus 143 ~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 143 IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 44 577788888888888888877 567888888888888875
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=6.3e-14 Score=154.37 Aligned_cols=171 Identities=21% Similarity=0.220 Sum_probs=128.5
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccc-cc-cCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IK-PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~-~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
+.++..++.+..+|..+ +..++.|+|++|+++.++.. +. .+++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45667777777777655 34678888888888887765 44 788888888888877666654 8888888888888877
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCcc-c---cCCCcccEEEecCcccccc
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQD-L---GEVECLEELDVGGTAIRQI 461 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l---~~l~~L~~L~L~~~~i~~l 461 (847)
.....+..+..+++|+.|+|++|......|..+..+++|++|+|++|.... +|.. + ..+++|+.|+|++|.++.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 554445567888888999998887666667778888899999998876554 4444 3 5688899999999999988
Q ss_pred Cc-cccCCCC--CCEEEeCCCCC
Q 003104 462 PP-SIVQLVN--LKIFSLHGCKG 481 (847)
Q Consensus 462 p~-~i~~l~~--L~~L~L~~~~~ 481 (847)
|. .+..++. |+.|++++|..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 74 4566766 47888888763
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.1e-13 Score=139.98 Aligned_cols=144 Identities=20% Similarity=0.232 Sum_probs=70.5
Q ss_pred EEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccccccc-ccccCCCCCcEEeccCCCC
Q 003104 333 LNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 333 L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~~c~~ 410 (847)
++.+++.+..+|.++. ++|++|+|++|.+....|. |.++++|++|+|++|.. ..+| ..+..+++|++|+|++|..
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcC
Confidence 4444444444444332 4455555555444443332 44455555555555443 2222 2334555555555555433
Q ss_pred ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCC
Q 003104 411 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 411 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 480 (847)
....+..+..+++|++|++++|... .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 3222223445555555555554432 455555555666666666666665553 34556666666666654
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.5e-13 Score=139.40 Aligned_cols=149 Identities=16% Similarity=0.087 Sum_probs=104.8
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 386 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 386 (847)
+.++..++.+..+|..+. .+|++|+|++|.++.+ |..+..+++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 345555666666666543 6777777777777766 45577778888888887766444443 67788888888887765
Q ss_pred cccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc
Q 003104 387 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 387 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
....+..+..+++|++|++++|. +..+|..+..+++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 44444456778888888888765 4477777778888888888887665544556777888888888888766
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=7.3e-16 Score=179.41 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=141.2
Q ss_pred CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCC-------------CccccCccccCCCCccEEE-ecCccCC
Q 003104 370 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR-------------NLVSFPKNVCLMKSLKILC-LCGCLKL 435 (847)
Q Consensus 370 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~-------------~l~~lp~~i~~l~~L~~L~-Ls~c~~l 435 (847)
+..+++|+.|+|++|. +..+|.++++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.+. .
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-L 422 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-H
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-c
Confidence 4668889999999865 56889999999999999987654 4455667778888888888 44432 1
Q ss_pred CcCCc------cccC--CCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccc
Q 003104 436 EKLPQ------DLGE--VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 507 (847)
Q Consensus 436 ~~lp~------~l~~--l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 507 (847)
..++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|....
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~------------------------ 477 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA------------------------ 477 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC------------------------
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc------------------------
Confidence 11111 0111 1258999999999999987 9999999999999987432
Q ss_pred cCCC-CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCccc--chhhhcCCCCCEEeecCCCCCccCC
Q 003104 508 SFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL--PSSINQLLKLKILCLEKCRNLKSLP 581 (847)
Q Consensus 508 ~l~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~lp 581 (847)
+|. ++.+++|+.|+|++|.+. .+| .++.+++|+.|+|++|+++.+ |..++.+++|+.|+|++|+ ++.+|
T Consensus 478 -lp~~~~~l~~L~~L~Ls~N~l~--~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 478 -LPPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred -cchhhhcCCCCCEEECCCCCCC--CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 444 788999999999999976 478 899999999999999999987 8999999999999999996 44443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=152.05 Aligned_cols=171 Identities=16% Similarity=0.211 Sum_probs=143.7
Q ss_pred cEEEEcCcccCCCccccCCCcceEEecCCCCCCCCCCC---CCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCC
Q 003104 288 RLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF---RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCN 363 (847)
Q Consensus 288 r~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~---~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~ 363 (847)
++++++++.+...+..++..++.|++.+|.+..++... .+.+|++|+|++|+++.++. .+..+++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 57888888888776677888999999999999888763 78999999999999999875 599999999999999987
Q ss_pred CCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccc----cCCCCccEEEecCccCCCcC
Q 003104 364 LIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV----CLMKSLKILCLCGCLKLEKL 438 (847)
Q Consensus 364 l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i----~~l~~L~~L~Ls~c~~l~~l 438 (847)
....+. |.++++|++|+|++|......|..+..+++|+.|+|++|. +..+|..+ ..+++|+.|+|++|......
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 666664 8999999999999998777778899999999999999976 55566654 57999999999998766544
Q ss_pred CccccCCCc--ccEEEecCcccc
Q 003104 439 PQDLGEVEC--LEELDVGGTAIR 459 (847)
Q Consensus 439 p~~l~~l~~--L~~L~L~~~~i~ 459 (847)
+..+..++. |+.|++++|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 456777776 488999999876
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=9.8e-14 Score=145.60 Aligned_cols=162 Identities=22% Similarity=0.212 Sum_probs=89.6
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLL 388 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~ 388 (847)
..+++.++.+..++....+++|++|++++|.++.++ ++..+++|++|+|++|++....+ +.++++|++|++++|.. .
T Consensus 22 ~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l-~ 98 (263)
T 1xeu_A 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL-K 98 (263)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-S
T ss_pred HHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-C
Confidence 333444444444442224555666666666666555 45556666666666664443333 56666666666666542 2
Q ss_pred cccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCC
Q 003104 389 EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQL 468 (847)
Q Consensus 389 ~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l 468 (847)
.+|.... ++|+.|++++|. +..++ .+..+++|++|++++|...+ ++ .+..+++|+.|++++|.++.+ ..+..+
T Consensus 99 ~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 99 NLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred CcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 3332222 566666666654 23333 35566666666666655433 33 456666666666666666665 456666
Q ss_pred CCCCEEEeCCCC
Q 003104 469 VNLKIFSLHGCK 480 (847)
Q Consensus 469 ~~L~~L~L~~~~ 480 (847)
++|+.|++++|.
T Consensus 172 ~~L~~L~l~~N~ 183 (263)
T 1xeu_A 172 KKVNWIDLTGQK 183 (263)
T ss_dssp CCCCEEEEEEEE
T ss_pred CCCCEEeCCCCc
Confidence 667777766664
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.3e-13 Score=132.30 Aligned_cols=136 Identities=20% Similarity=0.192 Sum_probs=94.7
Q ss_pred CCCcEEEEccCCCcc--ccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEe
Q 003104 327 PEKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 404 (847)
Q Consensus 327 ~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 404 (847)
+++|++|++++|.+. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 467788888888887 7777777888888888888865544 6677788888888888776555666666677777777
Q ss_pred ccCCCCccccC--ccccCCCCccEEEecCccCCCcCC---ccccCCCcccEEEecCccccccCcc
Q 003104 405 LKDCRNLVSFP--KNVCLMKSLKILCLCGCLKLEKLP---QDLGEVECLEELDVGGTAIRQIPPS 464 (847)
Q Consensus 405 L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp---~~l~~l~~L~~L~L~~~~i~~lp~~ 464 (847)
+++|. +..+| ..+..+++|++|++++|...+..+ ..+..+++|+.|++++|.+.++|..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 77765 34433 456677777777777765544333 2566677777777777776666653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.3e-12 Score=126.92 Aligned_cols=127 Identities=21% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCccEEEecCccCC-CcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCC
Q 003104 422 KSLKILCLCGCLKL-EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNK 500 (847)
Q Consensus 422 ~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~ 500 (847)
++|++|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~----------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG----------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS-----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch-----------------
Confidence 44444444444433 34444444455555555555555444 444455555555555554221
Q ss_pred CCCCccccCCC-CCCCCCCCEEeccCCCCCCCCCC--cccCCCCCCCEEECcCCCCcccch----hhhcCCCCCEEeecC
Q 003104 501 NSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIP--SDIGSLFSLEAIDLSGNNFFSLPS----SINQLLKLKILCLEK 573 (847)
Q Consensus 501 ~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~lp--~~l~~l~sL~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~ 573 (847)
.+|. +..+++|+.|+|++|.+. .+| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 86 -------~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 86 -------GLDMLAEKLPNLTHLNLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp -------CCCHHHHHCTTCCEEECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred -------HHHHHHhhCCCCCEEeccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 0222 233556666666666654 233 567777788888888887777765 667788888888887
Q ss_pred CC
Q 003104 574 CR 575 (847)
Q Consensus 574 c~ 575 (847)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.1e-13 Score=163.63 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=77.4
Q ss_pred CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCccc
Q 003104 370 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 449 (847)
Q Consensus 370 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 449 (847)
+..+++|+.|+|++|.. ..+|..+..+++|++|+|++|... .+|..++.+++|++|+|++|... .+|..++.+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 66677777777777653 366666777777777777776543 67777777777777777776654 6677777777777
Q ss_pred EEEecCccccccCccccCCCCCCEEEeCCCCCC
Q 003104 450 ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 450 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 482 (847)
+|+|++|.++.+|..++.+++|+.|+|++|...
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 777777777777777777777777777777644
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.6e-12 Score=127.82 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC--CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 409 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~ 409 (847)
++++++++++.+|..+.. +|++|++++|.+....+. +..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 344444444444433321 444444444433333221 3334444444444433333333334444444444444433
Q ss_pred CccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccc
Q 003104 410 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAI 458 (847)
Q Consensus 410 ~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 458 (847)
.....|..+..+++|++|++++|...+..|..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 3322233333444444444444443333344444444444444444433
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=3.4e-13 Score=161.85 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=42.7
Q ss_pred cCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCc----cccccccccccCCCCCcEEeccCCCCccccCccccCCCCccE
Q 003104 351 KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC----TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKI 426 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c----~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 426 (847)
++++.|+|.++........+.....|..+.+.+. ..+...+..+..+++|+.|+|++|.. ..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCE
Confidence 5567777777654443222322223333322221 11223344455555555555555442 245544445555555
Q ss_pred EEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCC
Q 003104 427 LCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGC 479 (847)
Q Consensus 427 L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 479 (847)
|+|++|... .+|..++.+++|+.|+|++|.++.+|..++.+++|++|+|++|
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence 555554433 4555555555555555555555555555555555555555444
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=7.7e-12 Score=124.42 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=107.3
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccc--cccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG--IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
+.+++.++.++.+|..+.. +|++|++++|.++.++.. +..+++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5677777778888876633 889999999999988764 88999999999999988877664 8899999999999988
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcC
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 438 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 438 (847)
.....+..+..+++|++|++++|...+..|..+..+++|++|++++|......
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 76666677889999999999998877777888889999999999998766543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.3e-12 Score=124.24 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCcEEEEccCCCcc--ccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEec
Q 003104 328 EKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 405 (847)
Q Consensus 328 ~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L 405 (847)
++|+.|++++|.+. .+|..+..+++|++|++++|.+... +.++.+++|++|++++|..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i------------------- 76 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV------------------- 76 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCC-------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcc-------------------
Confidence 34555555555555 4555455555555555555543332 3444445555555544443
Q ss_pred cCCCCccccCccccCCCCccEEEecCccCCCc-CCccccCCCcccEEEecCccccccCc----cccCCCCCCEEEeC
Q 003104 406 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLKIFSLH 477 (847)
Q Consensus 406 ~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~ 477 (847)
...+|..+..+++|++|++++|...+. .|..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 77 -----~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 77 -----SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -----CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -----cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 333444344455555555555443321 12445555666666666666665554 45566666666554
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=5.2e-12 Score=137.09 Aligned_cols=251 Identities=17% Similarity=0.159 Sum_probs=150.4
Q ss_pred CCCCcEEEEcCcccC--CCccccCCCcceEEecCCCCCCCCCC-C-C--------CCCcEEEEccCCCccccccc-cccC
Q 003104 284 MSNLRLLEINNLYSS--GNLEYLSNNLRYLKWHEYPFNSLPVS-F-R--------PEKLFKLNLCNSRIKYLWKG-IKPL 350 (847)
Q Consensus 284 ~~~Lr~L~l~~~~l~--~~~~~~~~~L~~L~~~~~~~~~lp~~-~-~--------~~~L~~L~L~~~~l~~l~~~-~~~l 350 (847)
+++|+.|++++|++. .........++++....+ .+|.. | . +.+|+.|++++ +++.+++. |..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 788999999999887 332223333444444443 55544 3 5 78888888888 78777654 7788
Q ss_pred cCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccc---ccc-ccccccCCCCCc-EEeccCCCCccccCccc----cC
Q 003104 351 KELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR---LLE-VHQSVGTLKRLI-LLNLKDCRNLVSFPKNV----CL 420 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~---l~~-lp~~i~~L~~L~-~L~L~~c~~l~~lp~~i----~~ 420 (847)
++|+.|++++|......+. |.++.++..+.+..... ... -+..+.++..|+ .+.+.... .++..+ -.
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~ 200 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQ 200 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCC
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccC
Confidence 8888888887765544443 77777777666654211 011 122344455555 44444322 222211 13
Q ss_pred CCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCC
Q 003104 421 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 499 (847)
Q Consensus 421 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~ 499 (847)
+.++..+.+.+.-....+......+++|+.|++.+|.++.+|.. +..+++|+.|++.++-
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni------------------- 261 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL------------------- 261 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC-------------------
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc-------------------
Confidence 45566666655321111111112367788888888888877754 5777788888877651
Q ss_pred CCCCCccccCCC--CCCCCCCC-EEeccCCCCCCCCC-CcccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEEe
Q 003104 500 KNSDSMCLSFPR--FTGLSSLQ-TLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILC 570 (847)
Q Consensus 500 ~~~~~~~~~l~~--l~~l~~L~-~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~ 570 (847)
..++. |.++++|+ .|++.+ ++. .+ +..+.++++|+.+++++|+++.++. .+.++++|+.|+
T Consensus 262 -------~~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 262 -------KTIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -------CEECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -------ceehHHHhhCChhccEEEEEcc-cce--EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 11222 77777787 888776 433 23 3567777788888887777777765 567777777765
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.2e-12 Score=121.43 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=89.3
Q ss_pred CCcCcEeeccCcccc-ccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEE
Q 003104 373 VPNLERLNLEGCTRL-LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEEL 451 (847)
Q Consensus 373 l~~L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 451 (847)
.++|++|++++|... +.+|..+..+++|++|++++|... .+ ..++.+++|++|++++|...+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466777777777654 467777788888888888887543 34 558899999999999998887788888889999999
Q ss_pred EecCccccccC--ccccCCCCCCEEEeCCCCCCC
Q 003104 452 DVGGTAIRQIP--PSIVQLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 452 ~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~ 483 (847)
++++|.++.+| ..+..+++|++|++++|....
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 99999999765 789999999999999997543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.4e-11 Score=120.95 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=78.6
Q ss_pred ceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccc
Q 003104 309 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 387 (847)
Q Consensus 309 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l 387 (847)
+.++..++.+..+|..+ +.+|++|++++|.++.+|..+..+++|++|+|++|.+....+. |.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45666666777777654 3577888888888887777777888888888888766655543 777777777777776654
Q ss_pred ccccccccCCCCCcEEeccCCCCccccCc-cccCCCCccEEEecCcc
Q 003104 388 LEVHQSVGTLKRLILLNLKDCRNLVSFPK-NVCLMKSLKILCLCGCL 433 (847)
Q Consensus 388 ~~lp~~i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~ 433 (847)
...+..+..+++|++|+|++|... .+|. .+..+++|++|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 444445666666666666665433 3332 34445555555555543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.5e-11 Score=120.79 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=68.6
Q ss_pred EEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC
Q 003104 331 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 331 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~ 410 (847)
++++++++.++.+|.++. ++|++|+|++|.+. .+|..+.++++|++|++++|..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~------------------------~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT------------------------LVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC------------------------SCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc------------------------hhHHHhhcccCCCEEECCCCcC
Confidence 356666666666665432 35555555555433 3444455555555555555443
Q ss_pred ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCcc-ccCCCCCCEEEeCCCC
Q 003104 411 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCK 480 (847)
Q Consensus 411 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 480 (847)
....+..+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 67 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 333334455555666666666555444445566666666666666666655553 5556666666666664
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.3e-11 Score=120.86 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCCCcEEEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccc-cCCCCCcEEe
Q 003104 326 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSV-GTLKRLILLN 404 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L~ 404 (847)
.+.+|++|++++|.++.++......++|++|+|++|.+... +.+..+++|++|++++|... .+|+.+ +.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEE
Confidence 56677777777777776644233333777777777754433 55666666666666665433 344333 5566666666
Q ss_pred ccCCCCccccCc--cccCCCCccEEEecCccCCCcCCcc----ccCCCcccEEEecCcccc
Q 003104 405 LKDCRNLVSFPK--NVCLMKSLKILCLCGCLKLEKLPQD----LGEVECLEELDVGGTAIR 459 (847)
Q Consensus 405 L~~c~~l~~lp~--~i~~l~~L~~L~Ls~c~~l~~lp~~----l~~l~~L~~L~L~~~~i~ 459 (847)
+++|.. +.+|. .+..+++|++|++++|... .+|.. +..+++|+.|++++|...
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 665542 34443 3444555555555554432 23332 444444555544444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=2.1e-11 Score=119.45 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=110.6
Q ss_pred ccccCcCCCEEEcCCCCCCCCCCCCCCCC-cCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccc-cCCCC
Q 003104 346 GIKPLKELKFMNLSHSCNLIRTPDFTGVP-NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV-CLMKS 423 (847)
Q Consensus 346 ~~~~l~~L~~L~L~~~~~l~~~p~~~~l~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i-~~l~~ 423 (847)
.+.++.+|+.|++++|.+. .+|.+..+. +|++|++++|... .+ ..++.+++|++|++++|.. ..+|..+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcc-cccCcchhhcCCC
Confidence 3567899999999999766 557777766 9999999998754 44 7899999999999999875 4566544 88999
Q ss_pred ccEEEecCccCCCcCCc--cccCCCcccEEEecCccccccCcc----ccCCCCCCEEEeCCCC
Q 003104 424 LKILCLCGCLKLEKLPQ--DLGEVECLEELDVGGTAIRQIPPS----IVQLVNLKIFSLHGCK 480 (847)
Q Consensus 424 L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~ 480 (847)
|++|++++|.. +.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999875 66776 788999999999999999999985 8999999999999886
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.3e-10 Score=113.89 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=50.8
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 410 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~ 410 (847)
.+++++++++.+|..+. ++|+.|++++|.+....+. +.++++|++|++++|......+..++.+++|++|++++|..
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34444444444443321 3455555555443332222 34444455555544432222222234444444444444332
Q ss_pred ccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc
Q 003104 411 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 411 l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
....+..+..+++|++|++++|...+..+..+..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 2222222334444444444444333222222344444444444444433
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.2e-10 Score=112.11 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=94.6
Q ss_pred cceEEecCCCCCCCCCCCCCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 308 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 308 L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
.+.++..++.+..+|..+ +++|++|++++|+++.++.. +..+++|++|++++|.+....+. +.++++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 345666667777777544 36788888888888877654 57888888888888876655554 6788888888888876
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccCcc-ccCCCCccEEEecCccCCCcC
Q 003104 386 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKN-VCLMKSLKILCLCGCLKLEKL 438 (847)
Q Consensus 386 ~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~l 438 (847)
.....+..+..+++|++|++++|... .+|.. +..+++|++|++++|...+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 55444455788888999999887644 55543 577888999999888765543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=2.6e-13 Score=135.93 Aligned_cols=125 Identities=21% Similarity=0.217 Sum_probs=65.9
Q ss_pred cccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccc
Q 003104 417 NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLL 496 (847)
Q Consensus 417 ~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~ 496 (847)
.+..+++|++|++++|...+ +| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------------- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------------- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-------------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-------------
Confidence 44455555555555544332 44 4555555555555555555555544445555555555543211
Q ss_pred cCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCC--cccCCCCCCCEEECcCCCCcccch-----------hhhcC
Q 003104 497 LPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP--SDIGSLFSLEAIDLSGNNFFSLPS-----------SINQL 563 (847)
Q Consensus 497 l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp--~~l~~l~sL~~L~Ls~n~l~~lp~-----------~i~~l 563 (847)
+|.+..+++|+.|++++|.+. .++ ..+..+++|++|++++|.++..+. .+..+
T Consensus 108 ------------l~~~~~l~~L~~L~l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 108 ------------LSGIEKLVNLRVLYMSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp ------------HHHHHHHHHSSEEEESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred ------------CCccccCCCCCEEECCCCcCC--chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 112334455566666655543 222 245666677777777776653321 25667
Q ss_pred CCCCEEe
Q 003104 564 LKLKILC 570 (847)
Q Consensus 564 ~~L~~L~ 570 (847)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 7777665
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.4e-10 Score=123.92 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCCCEEeccCCCCCCCCCCc-ccCCCCCCCEEECcCCCCcccch-hhhcCCCCC-EEeecC
Q 003104 516 SSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLK-ILCLEK 573 (847)
Q Consensus 516 ~~L~~L~Ls~~~l~~~~lp~-~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~-~L~L~~ 573 (847)
++|+.|+|++|++. .+|. .+.++++|+.|+|.+| ++.++. .|.++++|+ .|++.+
T Consensus 226 ~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 226 PNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp TTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred CCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 44444444444432 2322 3444444444444444 443332 334444444 444444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=5.1e-12 Score=126.39 Aligned_cols=133 Identities=19% Similarity=0.186 Sum_probs=97.7
Q ss_pred CccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccc
Q 003104 339 RIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 418 (847)
Q Consensus 339 ~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i 418 (847)
.++.+|..+..+++|++|+|++|.+.. +|.+.++++|++|++++|.. ..+|..+..+++|++|++++|. +..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 455666677788888888888876554 55777788888888888754 4677777777888888888875 44466 47
Q ss_pred cCCCCccEEEecCccCCCcCC-ccccCCCcccEEEecCccccccCcc-----------ccCCCCCCEEE
Q 003104 419 CLMKSLKILCLCGCLKLEKLP-QDLGEVECLEELDVGGTAIRQIPPS-----------IVQLVNLKIFS 475 (847)
Q Consensus 419 ~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-----------i~~l~~L~~L~ 475 (847)
..+++|++|++++|......+ ..+..+++|++|++++|.++..++. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 778888888888876543221 3677888899999999888754322 67888999886
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=2.2e-08 Score=111.31 Aligned_cols=232 Identities=16% Similarity=0.139 Sum_probs=122.9
Q ss_pred cccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccccc-ccccCCCCCcEEeccCCCCccccCccccCCCCcc
Q 003104 347 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 425 (847)
Q Consensus 347 ~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 425 (847)
+.++.+|+.+.+..+........|.++++|+.+.+..+ +..++ ..+.++..|+.+.+..+. ..+........+|+
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCc
Confidence 55566666666654421111112556666666666542 22222 344555555555544321 12222222344555
Q ss_pred EEEecCccCCCcCCccccCCCcccEEEecCccccccCccccCCCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCc
Q 003104 426 ILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM 505 (847)
Q Consensus 426 ~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 505 (847)
.+.+... ....-...+..+..|+.+.+..+...--...+..+..++.+......
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~------------------------- 287 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI------------------------- 287 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-------------------------
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee-------------------------
Confidence 5555431 11111223445555666655544333222334445555555443321
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCCCC-CcccCCCCCCCEEECcCCCCcccc-hhhhcCCCCCEEeecCCCCCccCCCC
Q 003104 506 CLSFPRFTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPEL 583 (847)
Q Consensus 506 ~~~l~~l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~l 583 (847)
..-..+..+.+|+.+.+..+ +. .+ ...+.++.+|+.++|..+ ++.++ ..+.+|.+|+.+.+..+ ++.|++-
T Consensus 288 -i~~~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 288 -VPEKTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp -ECTTTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred -eccccccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence 00112677888888888754 22 23 345778888999988644 66664 46778888888877643 4444431
Q ss_pred CCCcceeeccCCccccccccccccCCCCCceEEEccCCCcch
Q 003104 584 PPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVE 625 (847)
Q Consensus 584 p~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~ 625 (847)
...+|++|+.+..+.+... ....|.+|++|+.
T Consensus 361 -------aF~~C~~L~~i~lp~~~~~---~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 361 -------AFQGCINLKKVELPKRLEQ---YRYDFEDTTKFKW 392 (394)
T ss_dssp -------TBTTCTTCCEEEEEGGGGG---GGGGBCTTCEEEE
T ss_pred -------HhhCCCCCCEEEECCCCEE---hhheecCCCCCcE
Confidence 3468888888877665322 2345888988864
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.8e-08 Score=110.37 Aligned_cols=211 Identities=11% Similarity=0.064 Sum_probs=104.6
Q ss_pred CcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccccccc-ccccCCCCCcEEec
Q 003104 329 KLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNL 405 (847)
Q Consensus 329 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L 405 (847)
+|+.+.++. .++.++. .+.++++|+.++|++|........ |. ..+|+.+.|..+ +..++ .++.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 345555543 4444432 244555555555554433322222 22 345555555432 22222 34445555555555
Q ss_pred cCCCCccccCcc-ccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-----ccC-ccccCCCCCCEEEeCC
Q 003104 406 KDCRNLVSFPKN-VCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-----QIP-PSIVQLVNLKIFSLHG 478 (847)
Q Consensus 406 ~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-----~lp-~~i~~l~~L~~L~L~~ 478 (847)
..+ +..++.. +.+ .+|+.+.+.. .....-+..+.++++|+.+.+.++.+. .++ ..+..+++|+.+.+..
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 442 3333322 222 4566666632 222222334556666666666655443 233 3456667777776653
Q ss_pred CCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch
Q 003104 479 CKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS 558 (847)
Q Consensus 479 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~ 558 (847)
+- .. ..-..|.+|++|+.+.|..+ +. ..-...+.++ +|+.+++++|.+..++.
T Consensus 310 ~i-~~-----------------------I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 310 SI-RI-----------------------LGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TC-CE-----------------------ECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred ce-EE-----------------------EhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 21 00 01112667777777777554 22 1223456667 78888888877765543
Q ss_pred -hhhcCC-CCCEEeecCC
Q 003104 559 -SINQLL-KLKILCLEKC 574 (847)
Q Consensus 559 -~i~~l~-~L~~L~L~~c 574 (847)
.+.+++ +++.|.+..+
T Consensus 363 ~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSCCCSCTTCCEEEECGG
T ss_pred ccccCCCCCccEEEeCHH
Confidence 345553 6677777654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=6.1e-09 Score=101.09 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=23.8
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcc
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 385 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~ 385 (847)
+++++++.++.+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 44555555555544332 4455555555444433332 4444444444444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=8.4e-09 Score=100.53 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEccCCCccccccccccCcCCCEEEcCCCCCCCCCCC-CCCCCcCcEeeccCcccccccccc-ccCCCCCcEEeccCC
Q 003104 332 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRLILLNLKDC 408 (847)
Q Consensus 332 ~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~L~~c 408 (847)
.+++++++++.+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|.. ..+|.. +..+++|++|+|++|
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCC
Confidence 45555555555554432 4555555555544443332 44445555555544432 222222 234444444444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=8e-08 Score=106.66 Aligned_cols=212 Identities=12% Similarity=0.124 Sum_probs=154.1
Q ss_pred CCcEEEEccCCCccccccc-cccCcCCCEEEcCCCCCCCCCC--CCCCCCcCcEeeccCccccccccccccCCCCCcEEe
Q 003104 328 EKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 404 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 404 (847)
.+|+.+.++.+ ++.++.. +.+ .+|+.+.+..+ +..++ .|.++++|+.+++.+|. +..++...-...+|+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEE
Confidence 47888888766 7777654 555 47999999863 34444 39999999999999854 566666555579999999
Q ss_pred ccCCCCccccC-ccccCCCCccEEEecCccCCCcCC-ccccCCCcccEEEecCccccccC-ccccCCCCCCEEEeCCCCC
Q 003104 405 LKDCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLP-QDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 405 L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~ 481 (847)
+..+ +..++ ..+.++++|+.+.+..+ +..++ ..+.+ .+|+.+.+. +.++.++ ..+.++++|+.+.+.++..
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred eCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccc
Confidence 9853 55555 45778999999999863 33333 34555 789999994 5567664 4678899999999987653
Q ss_pred CCCCcCcchhhcccccCCCCCCCccccCCC--CCCCCCCCEEeccCCCCCCCCC-CcccCCCCCCCEEECcCCCCcccc-
Q 003104 482 QPPKILSSNFFLSLLLPNKNSDSMCLSFPR--FTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFSLP- 557 (847)
Q Consensus 482 ~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~Ls~n~l~~lp- 557 (847)
... .. ..++. |.+|++|+.++|.++ +. .+ ...+.++++|+.+.|..+ ++.++
T Consensus 284 ~~~-------------------~~-~~I~~~aF~~c~~L~~l~l~~~-i~--~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 284 NDD-------------------PE-AMIHPYCLEGCPKLARFEIPES-IR--ILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CCC-------------------TT-CEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred cCC-------------------cc-cEECHHHhhCCccCCeEEeCCc-eE--EEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 210 00 11222 889999999999853 33 34 456888999999999654 77664
Q ss_pred hhhhcCCCCCEEeecCCC
Q 003104 558 SSINQLLKLKILCLEKCR 575 (847)
Q Consensus 558 ~~i~~l~~L~~L~L~~c~ 575 (847)
..+.++ +|+.|++.+|.
T Consensus 340 ~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TSSSSS-CCCEEEECCSS
T ss_pred HhCCCC-CCCEEEEcCCC
Confidence 467888 99999999984
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=1.6e-08 Score=98.46 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=57.1
Q ss_pred CEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCcc-ccCCCCccEEEecCc
Q 003104 354 KFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKN-VCLMKSLKILCLCGC 432 (847)
Q Consensus 354 ~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c 432 (847)
+.++++++.+...++.+. ++|++|+|++|......|..++++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 566777665433222232 666666666665544445556666666666666654 3334332 355566666666655
Q ss_pred cCCCcCCccccCCCcccEEEecCccccccC
Q 003104 433 LKLEKLPQDLGEVECLEELDVGGTAIRQIP 462 (847)
Q Consensus 433 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp 462 (847)
...+..+..+..+++|+.|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 444333333555555666666655555333
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=1.6e-08 Score=98.16 Aligned_cols=105 Identities=11% Similarity=-0.053 Sum_probs=55.9
Q ss_pred CCEEEcCCCCCCCCCCCCCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCCCccccCccccCCCCccEEEecCc
Q 003104 353 LKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC 432 (847)
Q Consensus 353 L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 432 (847)
.+.++++++.+...+..+ .++|++|+|++|......|..+..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777766444322223 256666666666544444555666666666666665433222223355556666666555
Q ss_pred cCCCcCCccccCCCcccEEEecCcccc
Q 003104 433 LKLEKLPQDLGEVECLEELDVGGTAIR 459 (847)
Q Consensus 433 ~~l~~lp~~l~~l~~L~~L~L~~~~i~ 459 (847)
...+..+..+..+++|+.|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444333334555555555555555544
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.5e-07 Score=104.44 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccc-hhhhcCCCCCEEeecCCCCCccCCCCCCCccee
Q 003104 512 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELPPEIVFV 590 (847)
Q Consensus 512 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L 590 (847)
+..+..++.+......+. ...+..+.+|+.+.+..+ ++.++ ..+.++.+|+.++|.+. ++.|+.-
T Consensus 272 F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------- 337 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR------- 337 (394)
T ss_dssp TTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------
T ss_pred cccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------
Confidence 667777777777654321 234667888999988754 66664 35788888988887542 4444431
Q ss_pred eccCCccccccccccccCCCCCceEEEccCCCcchhhhhhh
Q 003104 591 GAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKD 631 (847)
Q Consensus 591 ~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n 631 (847)
...+|.+|+.+..+.+. .......|.+|.+|+++.+..+
T Consensus 338 aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLSL--RKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTTC--CEECTTTBTTCTTCCEEEEEGG
T ss_pred hccCCCCCCEEEECccc--cEehHHHhhCCCCCCEEEECCC
Confidence 34689999988776542 1112335899999988877644
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.2e-09 Score=120.23 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=15.2
Q ss_pred CCCCCCEEECcCCCCc-----ccchhhhcCCCCCEEeecCC
Q 003104 539 SLFSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKC 574 (847)
Q Consensus 539 ~l~sL~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c 574 (847)
..++|++|+|++|.++ .++..+...++|++|+|++|
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3344444444444443 12223333444444444444
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=2.1e-09 Score=118.24 Aligned_cols=131 Identities=15% Similarity=0.028 Sum_probs=76.7
Q ss_pred cCCCEEEcCCCCCCCCCC-C-CCCCCcCcEeeccCccccccccccc-----cCCCCCcEEeccCCCCcc----ccCcccc
Q 003104 351 KELKFMNLSHSCNLIRTP-D-FTGVPNLERLNLEGCTRLLEVHQSV-----GTLKRLILLNLKDCRNLV----SFPKNVC 419 (847)
Q Consensus 351 ~~L~~L~L~~~~~l~~~p-~-~~~l~~L~~L~L~~c~~l~~lp~~i-----~~L~~L~~L~L~~c~~l~----~lp~~i~ 419 (847)
++|+.|+|++|.+..... . ...+++|++|+|++|.....-...+ ...++|++|+|++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666654322111 1 1224456666666665433222222 235667777777765432 2444445
Q ss_pred CCCCccEEEecCccCCC----cCCccccCCCcccEEEecCcccc-----ccCccccCCCCCCEEEeCCCCC
Q 003104 420 LMKSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKG 481 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~ 481 (847)
.+++|++|+|++|.... .++..+...++|++|++++|.++ .++..+...++|++|+|++|..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 66777777777776432 23455566677888888888877 3445566678888888888863
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.3e-07 Score=103.03 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred EeeccCccccccccccccCCCCCcEEeccCCCCccccC-ccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCc
Q 003104 378 RLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGT 456 (847)
Q Consensus 378 ~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 456 (847)
.++++++..+..+|. +..+++|+.|+|++++.+..+| ..+..+++|+.|+|++|...+..|..+.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555424555666 6666677777776522333333 45667777777777777666666666777777777777777
Q ss_pred cccccCccccCCCCCCEEEeCCCCCC
Q 003104 457 AIRQIPPSIVQLVNLKIFSLHGCKGQ 482 (847)
Q Consensus 457 ~i~~lp~~i~~l~~L~~L~L~~~~~~ 482 (847)
.++.+|..+.....|+.|+|.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 77777765544334788888777643
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=2.7e-07 Score=100.46 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=40.0
Q ss_pred EEccCC-CccccccccccCcCCCEEEcCC-CCCCCCCCC-CCCCCcCcEeeccCccccccccccccCCCCCcEEeccCCC
Q 003104 333 LNLCNS-RIKYLWKGIKPLKELKFMNLSH-SCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 409 (847)
Q Consensus 333 L~L~~~-~l~~l~~~~~~l~~L~~L~L~~-~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~ 409 (847)
++++++ +++.+|. +..+++|+.|+|++ |.+....+. |.++++|++|+|++|......|..+++|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455655 6666666 66666666666664 443333322 5555555555555554333333444555555555555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=6.1e-08 Score=105.73 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred cCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCcccc-ccCccc--cCCCCCCEEEeCCCCCCCCCcCcch
Q 003104 414 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSI--VQLVNLKIFSLHGCKGQPPKILSSN 490 (847)
Q Consensus 414 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~~~~~~~~~~~ 490 (847)
++..+..+++|+.|.+++|... .++. + .+++|++|++..+.+. +....+ ..+++|++|+|+.+...........
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344456788888888887433 2333 3 3788999999888776 222233 3689999999864221000000000
Q ss_pred hhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCCccc---CCCCCCCEEECcCCCCcc-----cchhhhc
Q 003104 491 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI---GSLFSLEAIDLSGNNFFS-----LPSSINQ 562 (847)
Q Consensus 491 ~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp~~l---~~l~sL~~L~Ls~n~l~~-----lp~~i~~ 562 (847)
. + ...-....+++|+.|+|++|.+.+ ..+..+ ..+++|++|+|+.|.+.. ++..+..
T Consensus 241 ~---l-----------~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 241 V---F-----------RPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305 (362)
T ss_dssp G---T-----------GGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred H---H-----------HHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence 0 0 000011357899999999988642 121111 357899999999998873 5556678
Q ss_pred CCCCCEEeecCCC
Q 003104 563 LLKLKILCLEKCR 575 (847)
Q Consensus 563 l~~L~~L~L~~c~ 575 (847)
+++|+.|+|++|.
T Consensus 306 l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 306 IKHLKFINMKYNY 318 (362)
T ss_dssp HTTCSEEECCSBB
T ss_pred CCcceEEECCCCc
Confidence 8999999999884
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=6e-06 Score=91.43 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEEeecCCCCCccCCCCCCCccee
Q 003104 512 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELPPEIVFV 590 (847)
Q Consensus 512 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L 590 (847)
|.++.+|+.+.+...... .-...+.++++|+.+.+. +.++.++. .+.++.+|+.+.|.++ ++.|++-
T Consensus 261 F~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------- 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD------- 328 (394)
T ss_dssp TTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-------
T ss_pred eeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh-------
Confidence 677788888887655321 123456677888888885 45666654 5677888888877542 4444321
Q ss_pred eccCCccccccccccccCCCCCceEEEccCCCcchhhhhhhhH
Q 003104 591 GAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 633 (847)
Q Consensus 591 ~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~l~~~~n~~ 633 (847)
...+|.+|+.+..+.+. .......|.+|.+|+.+.+..+..
T Consensus 329 aF~~C~~L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSV--TKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTCTTCCEEEECTTC--CBCCGGGGTTCTTCCEEEESSCHH
T ss_pred HhhCCCCCCEEEECccc--CEEhHhHhhCCCCCCEEEECCcee
Confidence 24578888877775432 122234588888888877776643
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=1.5e-07 Score=102.75 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=89.1
Q ss_pred cccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccccccccc--CCCCCcEEeccCCCC-------ccc
Q 003104 343 LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVG--TLKRLILLNLKDCRN-------LVS 413 (847)
Q Consensus 343 l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~~i~--~L~~L~~L~L~~c~~-------l~~ 413 (847)
+...+..+|+|+.|+|++|... .++.+. +++|++|+|..|.........+. .+++|++|+|+.+.. ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 3344567788888888877433 334443 78899999887765444333443 688888888853211 111
Q ss_pred cCccc--cCCCCccEEEecCccCCCcCCccc---cCCCcccEEEecCccccc-----cCccccCCCCCCEEEeCCCC
Q 003104 414 FPKNV--CLMKSLKILCLCGCLKLEKLPQDL---GEVECLEELDVGGTAIRQ-----IPPSIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 414 lp~~i--~~l~~L~~L~Ls~c~~l~~lp~~l---~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 480 (847)
+...+ ..+++|++|++++|......+..+ ..+++|++|+|+.|.++. ++..+.++++|+.|+++.|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22222 257899999998877653322222 357889999999988873 45556678999999998875
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=4.8e-05 Score=83.61 Aligned_cols=279 Identities=12% Similarity=0.110 Sum_probs=142.0
Q ss_pred CCcEEEEEecCCCccccCchhhcCCCCCcEEEEcCc--ccCCCccccCCCcceEEecCCCCCCCCCC-CCCCCcEEEEcc
Q 003104 260 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNL--YSSGNLEYLSNNLRYLKWHEYPFNSLPVS-FRPEKLFKLNLC 336 (847)
Q Consensus 260 ~~~v~~l~l~~~~~~~l~~~~f~~~~~Lr~L~l~~~--~l~~~~~~~~~~L~~L~~~~~~~~~lp~~-~~~~~L~~L~L~ 336 (847)
.++++.+.+.. ....+...+|.+|.+|+.+.+..+ .+......- .+|..+.+.. .++.++.. |...+|+.+.++
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~-c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFAD-TKLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTT-CCCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCcceEechhhhcC-CCCceEECCc-eeeEeccceeccCCcccccCC
Confidence 35566777653 466778899999999999999643 111111111 1344444432 23344433 344467777776
Q ss_pred CCCccccccccccCcCCCEEEcCCCCCCCCCCCCCCCCcCcEeeccCcccccc------------ccccccCCCCCcEEe
Q 003104 337 NSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE------------VHQSVGTLKRLILLN 404 (847)
Q Consensus 337 ~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~------------lp~~i~~L~~L~~L~ 404 (847)
.+ +..+....-.-.+|+.+.+..+-.......|..+.+|+.+.+........ ....+.....+....
T Consensus 122 ~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (379)
T 4h09_A 122 GA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFT 200 (379)
T ss_dssp TT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEE
T ss_pred Cc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccc
Confidence 54 33443332222356666655442222222366677777766654322111 111222233333333
Q ss_pred ccCCCCccccCccccCCCCccEEEecCccCCCcCCccccCCCcccEEEecCccccccCc-cccCCCCCCEEEeCCCCCCC
Q 003104 405 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQP 483 (847)
Q Consensus 405 L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~ 483 (847)
+.... .......+....+|+.+.+..+ ....-...+..+.+|+.+.+..+ ++.+.. .+.++.+|+.+.+...-..
T Consensus 201 ~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~- 276 (379)
T 4h09_A 201 IPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKT- 276 (379)
T ss_dssp CCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSE-
T ss_pred cccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccccee-
Confidence 33211 1111222344556666665432 11112233455666777766554 444432 3455666777666432110
Q ss_pred CCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCC-CcccCCCCCCCEEECcCCCCcccch-hhh
Q 003104 484 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFSLPS-SIN 561 (847)
Q Consensus 484 ~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~Ls~n~l~~lp~-~i~ 561 (847)
.....+.++++|+.+.+.++.+. .+ ...+.++.+|+.+.|..+ ++.++. .+.
T Consensus 277 -----------------------i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 277 -----------------------VPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp -----------------------ECTTTTTTCTTCCEEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred -----------------------ccccccccccccccccccccccc--eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 11112677888888888776643 23 345777888888888643 665543 456
Q ss_pred cCCCCCEEeec
Q 003104 562 QLLKLKILCLE 572 (847)
Q Consensus 562 ~l~~L~~L~L~ 572 (847)
+|++|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 66666665553
No 157
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.33 E-value=8.2e-07 Score=98.97 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-----CCc-eeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~-----F~~-~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~ 88 (847)
.-+|||+|++|+||||||++++++...+ |.. .+|+. .........+..+++.++-........+..+...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 127 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 127 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 4444559999999999999999977653 222 34544 2234566777888887752111111122334456
Q ss_pred HHHHHhc--CCcEEEEEcCCCCH
Q 003104 89 LIRWRLC--RKRVLVILDDVDQL 109 (847)
Q Consensus 89 ~i~~~L~--~kk~LlVLDDV~~~ 109 (847)
.+.+.+. +++++|||||++..
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHHH
Confidence 6666664 78999999999764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=4.4e-05 Score=84.43 Aligned_cols=258 Identities=12% Similarity=0.108 Sum_probs=133.7
Q ss_pred CCCCcEEEEccCCCcccccc-ccccCcCCCEEEcCCCCCCCCCC--CCCCCCcCcEeeccCccccccccccccCCCCCcE
Q 003104 326 RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL 402 (847)
Q Consensus 326 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 402 (847)
.+.+|+.+.+..+ ++.++. .+..+.+|+.+.+..+. ..++ .|..+.+|+.+.+..+ +..+....-...+|+.
T Consensus 112 ~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~ 186 (394)
T 4gt6_A 112 FCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQ 186 (394)
T ss_dssp TCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSE
T ss_pred hcccceeeccCCc-cceehhhhhhhhccccccccccee--eeecccceecccccccccccce--eeEeccccccccceeE
Confidence 4555665555443 444543 36677788888876542 2333 3777788888777653 4444433333456777
Q ss_pred EeccCCCCccccCccccCCCCccEEEecCccCCCcCCcc--------------ccCCCcccEEEecCcccccc-CccccC
Q 003104 403 LNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQD--------------LGEVECLEELDVGGTAIRQI-PPSIVQ 467 (847)
Q Consensus 403 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~--------------l~~l~~L~~L~L~~~~i~~l-p~~i~~ 467 (847)
+.+.... ...-...+..+.+|........... ..... ......+..+.+.. .++.+ ...+..
T Consensus 187 i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~ 263 (394)
T 4gt6_A 187 IHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDS 263 (394)
T ss_dssp EEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTT
T ss_pred EEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeee
Confidence 7765421 1222233445566666554432111 11100 01112223333321 22222 234566
Q ss_pred CCCCCEEEeCCCCCCCCCcCcchhhcccccCCCCCCCccccCCCCCCCCCCCEEeccCCCCCCCCCC-cccCCCCCCCEE
Q 003104 468 LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSLEAI 546 (847)
Q Consensus 468 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L 546 (847)
+.+|+.+.+...... ..-..+.++++|+.+.+... +. .++ ..+.++.+|+.+
T Consensus 264 c~~L~~i~lp~~~~~------------------------I~~~aF~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i 316 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS------------------------IGTGAFMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSI 316 (394)
T ss_dssp CSSCCEEECCTTCCE------------------------ECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEE
T ss_pred cccccEEecccccce------------------------ecCcccccccccccccCCCc-cc--ccCceeecCCCCcCEE
Confidence 778888877543211 01112677788888888643 22 233 356778888888
Q ss_pred ECcCCCCcccc-hhhhcCCCCCEEeecCCCCCccCCCCCCCcceeeccCCccccccccccccCCCCCceEEEccCCCcch
Q 003104 547 DLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVE 625 (847)
Q Consensus 547 ~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~nc~~L~~ 625 (847)
+|..+ ++.+. ..+.+|.+|+.+.|..+ ++.|++ -...+|++|+.+....+.. ..-.|..|..|+.
T Consensus 317 ~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~-------~aF~~C~~L~~i~~~~~~~----~~~~~~~~~~L~~ 382 (394)
T 4gt6_A 317 DIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE-------SAFSNCTALNNIEYSGSRS----QWNAISTDSGLQN 382 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG-------GGGTTCTTCCEEEESSCHH----HHHTCBCCCCC--
T ss_pred EeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH-------hHhhCCCCCCEEEECCcee----ehhhhhccCCCCE
Confidence 88754 66664 46778888888887542 444443 1345788888887654321 1123677888887
Q ss_pred hhhhhhh
Q 003104 626 DQVSKDN 632 (847)
Q Consensus 626 l~~~~n~ 632 (847)
+.+..|.
T Consensus 383 i~i~~~~ 389 (394)
T 4gt6_A 383 LPVAPGS 389 (394)
T ss_dssp -------
T ss_pred EEeCCCC
Confidence 7766553
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=8.3e-06 Score=89.85 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=65.6
Q ss_pred HHHHhHhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC--------CceeEEEecccccccC-ChHHHHHHHHHH
Q 003104 3 KMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--------EASSFLANVREVSVTR-GLVPLQEQLLSE 71 (847)
Q Consensus 3 ~i~~lL~~--~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F--------~~~~~v~~~~~~s~~~-~l~~l~~~il~~ 71 (847)
++..++.. .....+.|.|+|++|+||||+|+++++.+...+ ...+|+. ..... ....+..+++.+
T Consensus 31 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~l~~~ 106 (384)
T 2qby_B 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGTPQAVLSSLAGK 106 (384)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCCHHHHHHHHHHH
Confidence 44444432 234456899999999999999999999775432 2233443 22223 556677777777
Q ss_pred HhcCCCcc-ccchhhhHHHHHHHhcCCcEEEEEcCCCCHH
Q 003104 72 VLMERDLI-IWDVHKGINLIRWRLCRKRVLVILDDVDQLE 110 (847)
Q Consensus 72 ~l~~~~~~-~~~~~~~~~~i~~~L~~kk~LlVLDDV~~~~ 110 (847)
+.+..... ..+.......+.+.+..++.+|||||++...
T Consensus 107 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 107 LTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHH
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhc
Confidence 53322111 1223445667778888777799999997653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=0.00036 Score=76.52 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=48.1
Q ss_pred CCCCCCCCEEeccCCCCCCCCCC-cccCCCCCCCEEECcCCCCcccc-hhhhcCCCCCEEeecCCCCCccCCCCCCCcce
Q 003104 512 FTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELPPEIVF 589 (847)
Q Consensus 512 l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~ 589 (847)
+.++.+|+.+.+..+- . .++ ..+..+++|+.+.+.++.++.++ ..+.++.+|+.+.|.++ ++.|+.-
T Consensus 259 F~~~~~l~~i~l~~~i-~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------ 327 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV-K--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY------ 327 (379)
T ss_dssp TTTCTTCCEEEECCCC-S--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT------
T ss_pred cceeehhccccccccc-e--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH------
Confidence 5667777777775432 1 232 34566777777777777777664 35667777777776432 3333321
Q ss_pred eeccCCcccccccccc
Q 003104 590 VGAEDCTSLETISAFA 605 (847)
Q Consensus 590 L~i~~c~~L~~l~~~~ 605 (847)
...+|.+|+++..+.
T Consensus 328 -aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 328 -AFKNCKALSTISYPK 342 (379)
T ss_dssp -TTTTCTTCCCCCCCT
T ss_pred -HhhCCCCCCEEEECC
Confidence 234666666665543
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.03 E-value=1.1e-05 Score=88.74 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=64.3
Q ss_pred hHHHHhHhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccC-----C-ceeEEEecccccccCChHHHHHHHHHHHh
Q 003104 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----E-ASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (847)
Q Consensus 2 ~~i~~lL~~~--~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F-----~-~~~~v~~~~~~s~~~~l~~l~~~il~~~l 73 (847)
+++..++... ....+.|.|+|++|+||||+|+++.+.....+ . ..+++. .........+..+++.++-
T Consensus 29 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~ 104 (387)
T 2v1u_A 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPYRVASAIAEAVG 104 (387)
T ss_dssp HHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHHHHHHHHHHHhC
Confidence 3445555321 34557889999999999999999999775432 1 223333 2333455667777777752
Q ss_pred cCCCccccchhhhHHHHHHHh--cCCcEEEEEcCCCCHH
Q 003104 74 MERDLIIWDVHKGINLIRWRL--CRKRVLVILDDVDQLE 110 (847)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~~L--~~kk~LlVLDDV~~~~ 110 (847)
........+..+....+.+.+ .+++++|||||++...
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 105 VRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 211111122334455666666 4568899999998653
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.88 E-value=1.1e-05 Score=88.70 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=60.4
Q ss_pred HHHHhHhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC---ceeEEEecccccccCChHHHHHHHHHHHhcCCC
Q 003104 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE---ASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (847)
Q Consensus 3 ~i~~lL~~~--~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~---~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~ 77 (847)
++..++... ....+.|.|+|++|+||||||+++.+.+...+. ..+|+. .........+...++.++ +...
T Consensus 31 ~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~i~~~l-~~~~ 105 (386)
T 2qby_A 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVLADLLESL-DVKV 105 (386)
T ss_dssp HHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHHHHHTTTT-SCCC
T ss_pred HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHHHHHHHHh-CCCC
Confidence 344444431 344578999999999999999999998876653 233443 222234445555555543 1111
Q ss_pred -ccccchhhhHHHHHHHhc--CCcEEEEEcCCCCH
Q 003104 78 -LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQL 109 (847)
Q Consensus 78 -~~~~~~~~~~~~i~~~L~--~kk~LlVLDDV~~~ 109 (847)
....+..+....+.+.+. +++.+|||||++..
T Consensus 106 ~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 106 PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 011123334455566664 45899999998654
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=6e-05 Score=82.98 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEEecccccccCChHHHHHHHHHHHhcCCCc-cccchhhhHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVHKGINLIR 91 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~-~~~~~~~~~~~i~ 91 (847)
..+.+.|+|+.|+||||+|+++.+...... ...+++. .+.......+..+++..+ +.... ......+....+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~ 117 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIGEIARSL-NIPFPRRGLSRDEFLALLV 117 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHHHHHHHh-CccCCCCCCCHHHHHHHHH
Confidence 345899999999999999999999876553 2234443 233344556667776664 22111 1112334445555
Q ss_pred HHhc--CCcEEEEEcCCCCH
Q 003104 92 WRLC--RKRVLVILDDVDQL 109 (847)
Q Consensus 92 ~~L~--~kk~LlVLDDV~~~ 109 (847)
+.+. +++.+|||||++..
T Consensus 118 ~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 118 EHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHTTCCEEEEEETGGGS
T ss_pred HHHhhcCCeEEEEEECcccc
Confidence 5553 66889999999763
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=7.6e-06 Score=78.62 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=16.5
Q ss_pred CCCEEECcCC-CCc--ccchhhhcCCCCCEEeecCCCCCc
Q 003104 542 SLEAIDLSGN-NFF--SLPSSINQLLKLKILCLEKCRNLK 578 (847)
Q Consensus 542 sL~~L~Ls~n-~l~--~lp~~i~~l~~L~~L~L~~c~~L~ 578 (847)
+|++|+|++| +++ .+. .+.++++|+.|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 4555555554 244 121 33445555555555554443
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.76 E-value=2.5e-05 Score=84.63 Aligned_cols=98 Identities=17% Similarity=0.141 Sum_probs=54.9
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEeccccc---ccCChHHHHHHHHHHHhc----
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS---VTRGLVPLQEQLLSEVLM---- 74 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s---~~~~l~~l~~~il~~~l~---- 74 (847)
+++..++..+ ++|.|+|++|+|||||++.+.++.. .+|+.. .... .......+.+.+...+..
T Consensus 22 ~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 91 (350)
T 2qen_A 22 RKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITREELIKELQSTISPFQKF 91 (350)
T ss_dssp HHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHHHHHHHHHHHHHHHHhH
Confidence 3455556543 6999999999999999999998751 556542 2111 011233344444333210
Q ss_pred -----------CCCc--cccchhhhHHHHHHHhcC-CcEEEEEcCCCCH
Q 003104 75 -----------ERDL--IIWDVHKGINLIRWRLCR-KRVLVILDDVDQL 109 (847)
Q Consensus 75 -----------~~~~--~~~~~~~~~~~i~~~L~~-kk~LlVLDDV~~~ 109 (847)
+... ...+..+....+.+.... ++++||+||++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~ 140 (350)
T 2qen_A 92 QSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYL 140 (350)
T ss_dssp HHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGG
T ss_pred hhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHH
Confidence 0000 112233344455554432 3999999999764
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=1.8e-05 Score=76.08 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCCCC-CCCCcEEEEccCCCcccc-ccccccCcCCCEEEcCCCC
Q 003104 321 LPVSF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSC 362 (847)
Q Consensus 321 lp~~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~ 362 (847)
+|..+ ...+|+.||++++.++.. -..+..+++|++|+|++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 34433 334677777777766522 1224455555555555554
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=9.8e-06 Score=79.45 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=38.2
Q ss_pred CCCCCEEeccCCCCCCCC---CCcccCCCCCCCEEEC--cCCCCc-----ccchhhhcCCCCCEEeecCCC
Q 003104 515 LSSLQTLDLSDCNLLEGA---IPSDIGSLFSLEAIDL--SGNNFF-----SLPSSINQLLKLKILCLEKCR 575 (847)
Q Consensus 515 l~~L~~L~Ls~~~l~~~~---lp~~l~~l~sL~~L~L--s~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 575 (847)
.++|++|+|++|.+.+.. +...+...++|++|+| ++|.+. .+...+...++|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 345666666666654211 3345556667777777 667776 244555666778888887774
No 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=1.7e-05 Score=77.74 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCCCccEEEecCccCCCc----CCccccCCCcccEEEe--cCcccc-----ccCccccCCCCCCEEEeCCCC
Q 003104 420 LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDV--GGTAIR-----QIPPSIVQLVNLKIFSLHGCK 480 (847)
Q Consensus 420 ~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L--~~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 480 (847)
..++|++|+|++|..... +...+...++|++|++ ++|.+. .+...+...++|++|++++|.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 334555555555543321 2334445555666666 556555 233444555667777766664
No 169
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.54 E-value=0.00097 Score=66.46 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=31.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
+++..++..+. ...+-|+|.+|+||||+|+++.+.+........|+
T Consensus 27 ~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 27 QRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp HHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred HHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 34555555442 22388999999999999999999875543333333
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=0.00018 Score=71.26 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.|.|+|.+|+||||||+++++....+....+|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67889999999999999999998876655556654
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.45 E-value=0.00024 Score=76.85 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++|.|+|++|+|||||++.+.++.... .+|+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE
Confidence 699999999999999999999987532 45664
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00057 Score=72.31 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCC-----ceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-----ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~-----~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~ 87 (847)
..-..|-|+|++|.|||++|++|.+++...-+ ...++..- ...-.....+..+|+.++.+. ........+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN--c~~~~t~~~~~~~I~~~L~g~-~~~~~~~~~~L 119 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID--ALELAGMDALYEKIWFAISKE-NLCGDISLEAL 119 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE--TTCCC--HHHHHHHHHHHSCC-C--CCCCHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe--ccccCCHHHHHHHHHHHhcCC-CCCchHHHHHH
Confidence 34567789999999999999999998754321 12233200 112234456777788876433 22221111222
Q ss_pred HHHHHHh---cCCcEEEEEcCCCCH
Q 003104 88 NLIRWRL---CRKRVLVILDDVDQL 109 (847)
Q Consensus 88 ~~i~~~L---~~kk~LlVLDDV~~~ 109 (847)
..+.+.+ ++++++||||+++..
T Consensus 120 ~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 120 NFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHhhhccCCceEEEEecHHHh
Confidence 2333333 456899999999854
No 173
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=0.00036 Score=67.83 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++...+.. ...+.|-|+|.+|+||||+|+++.+.+..
T Consensus 33 ~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 33 RTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444443 23355789999999999999999997643
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00016 Score=74.63 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCccccc---cccccCcCCCEEEcCCCCC
Q 003104 328 EKLFKLNLCNSRIKYLW---KGIKPLKELKFMNLSHSCN 363 (847)
Q Consensus 328 ~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~L~~~~~ 363 (847)
++|+.|+|++|++..++ ..+..+++|+.|+|++|++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 34555555555554332 2334455555555555543
No 175
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00025 Score=73.23 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=53.9
Q ss_pred CCCCCCCEEeccCCCCCCC-CCCcccCCCCCCCEEECcCCCCcccchhhhcCC--CCCEEeecCCCCCccCC
Q 003104 513 TGLSSLQTLDLSDCNLLEG-AIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL--KLKILCLEKCRNLKSLP 581 (847)
Q Consensus 513 ~~l~~L~~L~Ls~~~l~~~-~lp~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~lp 581 (847)
..+++|+.|+|++|.+..- .+|..+..+++|+.|+|++|+++.+. .+..+. +|+.|+|++|+.-..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3578999999999997531 34566678999999999999999773 455555 99999999998666555
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.22 E-value=0.00065 Score=65.75 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+.|-|+|..|+||||+|+++.+.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445689999999999999999997754
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.18 E-value=0.00058 Score=69.10 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
++..++..+. .-+.+.|+|++|+||||+|+++.+.+...+
T Consensus 34 ~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 34 ALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp HHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4455554432 224788999999999999999999776543
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.00078 Score=65.27 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+.++|+|..|.||||||+++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999775
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0022 Score=68.29 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++..++..+. ...+-|+|++|+||||+|+++.+.+..
T Consensus 32 ~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 32 RLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp HHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4455555432 223889999999999999999998744
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0035 Score=66.75 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=28.2
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+..++..+ ...-+-|+|++|+||||+|+++.+.+...
T Consensus 36 ~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 36 RLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp HHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 445555544 22338899999999999999999987543
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.91 E-value=0.00081 Score=75.18 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
..-+.|+|..|+||||||+++.+.+..++...-++. ++ ...+..++...+... ....+.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~----v~----~~~~~~~~~~~~~~~----------~~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY----IT----SEKFLNDLVDSMKEG----------KLNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE----EE----HHHHHHHHHHHHHTT----------CHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE----ee----HHHHHHHHHHHHHcc----------cHHHHHHHh
Confidence 567899999999999999999998876664333332 11 112334444443211 123345555
Q ss_pred cCCcEEEEEcCCCC
Q 003104 95 CRKRVLVILDDVDQ 108 (847)
Q Consensus 95 ~~kk~LlVLDDV~~ 108 (847)
+.+.-+|++||++.
T Consensus 192 ~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 192 RKKVDILLIDDVQF 205 (440)
T ss_dssp TTTCSEEEEECGGG
T ss_pred cCCCCEEEEeCccc
Confidence 54677899999963
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.66 E-value=0.0034 Score=67.06 Aligned_cols=29 Identities=34% Similarity=0.237 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....+-|+|+.|+||||||+++.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34578899999999999999999977544
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0025 Score=66.96 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L~ 95 (847)
+++-|+|++|+||||||.++... +-..+.|+..-. .+... ... .+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~--eE~v~-----------~~~------~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRF--GEPLS-----------GYN------TDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEB--SCSST-----------TCB------CCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecc--hhhhh-----------hhh------cCHHHHHHHHHHHHh
Confidence 56789999999999999999776 223456766300 00000 000 233344455666676
Q ss_pred CCcEEEEEcCCCCH
Q 003104 96 RKRVLVILDDVDQL 109 (847)
Q Consensus 96 ~kk~LlVLDDV~~~ 109 (847)
..+ +||+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 666 9999999754
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.53 E-value=0.0018 Score=60.65 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=26.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+.++|+|..|.||||||+++.+.+...=...+|+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 58999999999999999999997654211145554
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.40 E-value=0.0095 Score=59.29 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+..++..+-..=.+++|+|.+|.||||+|+.+.. ..-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 34455543333335899999999999999999887 2234566665
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.30 E-value=0.0098 Score=61.06 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+-|-|+|.+|+||||+|+++.+.....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3457799999999999999999976543
No 187
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.25 E-value=0.0026 Score=66.96 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...+.|-+||++|+|||+||+++.+.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345688899999999999999999987543
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.05 E-value=0.016 Score=61.18 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...+.|.|+|..|.||||+|+++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3446789999999999999999999764
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.01 E-value=0.02 Score=63.83 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.+..|-|||..|+||||+|+++.+.....|
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f 78 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANADV 78 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 346788999999999999999999765443
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.98 E-value=0.017 Score=62.75 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=27.2
Q ss_pred HhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 6 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 6 ~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..+..+...-+.|-|+|..|+||||+|+++.+.+..
T Consensus 61 ~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 333333333367889999999999999999998764
No 191
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.97 E-value=0.012 Score=62.15 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~ 50 (847)
-+-|-|||..|+|||+||+++.+.+. .+-....++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46788999999999999999999776 5544445554
No 192
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.95 E-value=0.0053 Score=64.10 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+-|-|+|.+|+||||+|+++.+.....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34568899999999999999999876543
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.91 E-value=0.01 Score=61.56 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=25.3
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
....+-|-|+|..|+||||+|+++.+....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345678889999999999999999997543
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.039 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|+|..|+||||+|+++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 195
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.76 E-value=0.046 Score=59.19 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=27.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+...+..+. --+.+-|+|..|+||||+|+++.+.+..
T Consensus 27 ~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 27 ALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444332 2246789999999999999999987643
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.73 E-value=0.02 Score=60.99 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+-|-|+|+.|.||||||+++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3678899999999999999999976
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.096 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|+|..|+||||+|+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998653
No 198
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.69 E-value=0.011 Score=62.70 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-|+|..|+||||+|+++.+.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 388999999999999999999763
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.012 Score=67.19 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+.+-|+|+.|+||||+|+++.+.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999976
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.022 Score=57.58 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.6
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc------cCCceeEEE
Q 003104 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~------~F~~~~~v~ 50 (847)
..+-.+|..+-..=.+++|+|.+|.||||||+.+...+.. .-...+|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3455555433333369999999999999999998875322 135677776
No 201
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.50 E-value=0.011 Score=59.46 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
..+.|.|+|..|+||||+|+++.+..........|+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3467889999999999999999997765544445554
No 202
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.50 E-value=0.02 Score=60.40 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
...-|-|+|.+|+||||+|+++.+.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999999987644
No 203
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.46 E-value=0.025 Score=62.57 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccC-CceeEEE
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLA 50 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F-~~~~~v~ 50 (847)
.++|+|..|+||||||+.+-..+..++ +.++++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~ 187 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEee
Confidence 589999999999999999998766554 4444443
No 204
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.44 E-value=0.0067 Score=57.84 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+|+|.|+.|.||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37999999999999999999 43
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.44 E-value=0.0089 Score=59.24 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...-.+|+|+|..|.||||||+.+...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999999998665
No 206
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.43 E-value=0.014 Score=61.02 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 11 ~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
......+|||+|..|.||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4456789999999999999999999886543
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.43 E-value=0.024 Score=59.44 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+.|.|+|..|+||||+|+++.+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999987643
No 208
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.37 E-value=0.0079 Score=57.27 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|.|.|+.|.||||+|+.+..+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.36 E-value=0.056 Score=58.02 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc------cCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~------~F~~~~~v~ 50 (847)
.+-.+|..+-..=+++.|+|..|+||||+|..+...... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344455434445579999999999999999998775432 224567776
No 210
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.34 E-value=0.033 Score=59.79 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++-..|. .+-..=+++.|+|..|+||||||..+...+...=..++|+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3444554 23233479999999999999999999987654434466775
No 211
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.33 E-value=0.0086 Score=63.71 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+.|-|+|+.|+||||+|+++.+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356889999999999999999997653
No 212
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.33 E-value=0.0071 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|.|.|+.|.||||+|+++-++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988754
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.009 Score=58.73 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-++|.|+|+.|.||||+|+.+..++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 214
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.26 E-value=0.022 Score=61.60 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-|-|+|..|+||||+|+++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999998764
No 215
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.20 E-value=0.032 Score=57.80 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
|+|+|..|.||||||+++......
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999986543
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.16 E-value=0.051 Score=58.24 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=23.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+.++|+|..|.|||||++.+-+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 58999999999999999999886654
No 217
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.11 E-value=0.032 Score=60.23 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+-|-|+|..|+||||||+++.+....
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45789999999999999999998753
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.009 Score=57.71 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|+|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 219
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.08 E-value=0.01 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+|+|+|+.|.||||+|+.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999764
No 220
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.06 E-value=0.015 Score=61.92 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+-|-|+|.+|+|||++|+++.+.....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 3568899999999999999999986543
No 221
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.05 E-value=0.021 Score=56.15 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|+|+|+.|.||||+|+.+...+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998775
No 222
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.03 E-value=0.14 Score=54.62 Aligned_cols=27 Identities=22% Similarity=0.189 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+.+-++|..|+||||+|+++-+.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 357889999999999999999987654
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.00 E-value=0.012 Score=56.94 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|.|+|+.|.||||+|+.+-.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999988653
No 224
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.92 E-value=0.021 Score=54.29 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..++|+|.|..|.||||+++++...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46799999999999999999999977654
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.91 E-value=0.021 Score=55.44 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=24.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+|+|+|+.|.||||+++.+.. ...+.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA----QLDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH----HSSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhc----ccCCeEEEc
Confidence 5899999999999999999975 234445554
No 226
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.77 E-value=0.023 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-.+|+|.|+.|.||||+|+.+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998876
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.76 E-value=0.013 Score=56.82 Aligned_cols=31 Identities=45% Similarity=0.576 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCce
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~ 46 (847)
++|+|+|+.|.|||||++.+.......|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 5799999999999999999998766445433
No 228
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.72 E-value=0.012 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-|-|+|..|.|||++|+++++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999853
No 229
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.72 E-value=0.016 Score=54.98 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..++|+|.|+.|.||||+|+.+-++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988654
No 230
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.70 E-value=0.013 Score=55.90 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|+|+.|.||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 231
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.68 E-value=0.02 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.67 E-value=0.079 Score=55.74 Aligned_cols=27 Identities=44% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
...|.|+|..|+||||+|+++.+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999997644
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.65 E-value=0.048 Score=61.02 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-|.|+|+.|.||||||+++.++....
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 37799999999999999999976543
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.62 E-value=0.031 Score=54.01 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-.+|.|.|+.|.||||+|+.+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999987654
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.61 E-value=0.017 Score=56.61 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.60 E-value=0.032 Score=62.83 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|.|+|..|.||||||+++.+...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 237
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.59 E-value=0.033 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|.|.|+.|.||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999997764
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.58 E-value=0.02 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+|.|.|+.|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 239
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.58 E-value=0.05 Score=60.68 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+-|-|+|+.|+||||||+++.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999976
No 240
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.56 E-value=0.014 Score=56.19 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.++|.|.|+.|.||||+|+.+..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 241
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.51 E-value=0.054 Score=57.51 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+..++..+. --+++-+.|..|+||||+|+++.+.+.
T Consensus 37 ~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 37 TFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp HHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4455555432 225677888999999999999998764
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.45 E-value=0.076 Score=56.44 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=31.7
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------CCceeEEE
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~------F~~~~~v~ 50 (847)
+-.+|..+-..=+++.|+|.+|+||||+|..+...+... -..++|+.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344443332333589999999999999999987754322 24567776
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.44 E-value=0.025 Score=60.27 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred HHHHhHh--cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 3 KMNGYLE--AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 3 ~i~~lL~--~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
++.+.+. ........|.|+||.|.||||+|+.+...+...|
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444443 2345567899999999999999999999776555
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.43 E-value=0.053 Score=53.24 Aligned_cols=28 Identities=43% Similarity=0.541 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..-.+|+|.|..|.||||+|+.+...+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999988664
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.40 E-value=0.014 Score=56.65 Aligned_cols=30 Identities=43% Similarity=0.571 Sum_probs=24.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~ 45 (847)
|.|.|.|+.|+|||||++++..+....|..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~ 31 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEE
Confidence 458899999999999999998876555543
No 246
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.37 E-value=0.044 Score=58.94 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-+++-|.|.+|+||||||..+......+=..++|+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 368999999999999999998876654445677776
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.35 E-value=0.02 Score=56.24 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.29 E-value=0.019 Score=54.89 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy 36 (847)
.+++|+|..|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999744
No 249
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.24 E-value=0.022 Score=56.19 Aligned_cols=26 Identities=46% Similarity=0.567 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
....+|+|+|+.|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999998764
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.22 E-value=0.026 Score=54.67 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=23.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|.|.|+.|.||||+|+.+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.21 E-value=0.024 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|+|+.|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 252
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.21 E-value=0.028 Score=54.48 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-.+|.|.|+.|.||||+|+.+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998865
No 253
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.21 E-value=0.021 Score=54.58 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|.|.|+.|.||||+|+.+-.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988654
No 254
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.18 E-value=0.09 Score=47.59 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=41.4
Q ss_pred CEEeccCCCCCCCCCCcccCCCCCCCEEECcCCCCcccchh-hhcCCCCCEEeecCCC
Q 003104 519 QTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKLKILCLEKCR 575 (847)
Q Consensus 519 ~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 575 (847)
..++.+++++....+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3677777776423567543 24789999999999988764 5788999999999886
No 255
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.18 E-value=0.024 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+|+|.|+.|.||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999877
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.15 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|+|+.|.||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998754
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.14 E-value=0.028 Score=57.52 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|.|+|+.|.||||||+++..+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5799999999999999999988653
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.13 E-value=0.062 Score=65.25 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++...|.... ..-+.|+|.+|+||||+|+.+.+++..
T Consensus 181 ~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 181 RVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3444444432 234679999999999999999998744
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.12 E-value=0.03 Score=53.95 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.++|+|..|.|||||++.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.12 E-value=0.027 Score=55.69 Aligned_cols=27 Identities=48% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.-.+|||+|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347999999999999999999988654
No 261
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.11 E-value=0.025 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+|||.|+.|.||||+|+.+-.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 262
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.07 E-value=0.026 Score=59.75 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++.|||+|.|=|||||||.|-.+---+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 468999999999999999998776655443
No 263
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.05 E-value=0.031 Score=54.77 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
....+|+|.|+.|.||||+|+.+-..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44679999999999999999998774
No 264
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.01 E-value=0.036 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
....+|+|.|+.|.||||+|+.+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999998764
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.00 E-value=0.028 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|+|+.|.||||+|+.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998755
No 266
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.99 E-value=0.032 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.|+|.|+.|.||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988654
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.98 E-value=0.022 Score=56.08 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-++|.|+|+.|+||||+|+.+-....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36899999999999999999988653
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.97 E-value=0.026 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-++|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 368999999999999999999886543
No 269
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.95 E-value=0.026 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|+|.|+.|.||||+|+.+-.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988653
No 270
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.95 E-value=0.035 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999988764
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.95 E-value=0.024 Score=55.41 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-++|+|+|+.|+|||||++++.......|
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~ 47 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKF 47 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccE
Confidence 47899999999999999999998654333
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.90 E-value=0.033 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
-.+|+|.|+.|.||||+|+.+-++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.88 E-value=0.025 Score=60.61 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
...++|+|..|.||||||+++.+.+..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 467899999999999999999997754
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.86 E-value=0.055 Score=54.03 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc------cCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~------~F~~~~~v~ 50 (847)
.+..+|..+-..=.+++|+|..|.|||||++.+...+.. .-...+|+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 344444333333479999999999999999999874432 123466665
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.85 E-value=0.13 Score=56.52 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+|.|+|.+|+||||+|..+...+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999998876654
No 276
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.84 E-value=0.036 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.81 E-value=0.024 Score=55.61 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++++|+|+.|.|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999988654
No 278
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.80 E-value=0.026 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++|.|.|+.|.||||+|+.+-++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999988653
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.77 E-value=0.097 Score=56.47 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-+++-|+|.+|+||||||..+...+...-..++|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 358889999999999999988776554444677776
No 280
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.77 E-value=0.095 Score=47.43 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=25.6
Q ss_pred EEecCCCCC--CCCCCCCCCCcEEEEccCCCccccccc-cccCcCCCEEEcCCC
Q 003104 311 LKWHEYPFN--SLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHS 361 (847)
Q Consensus 311 L~~~~~~~~--~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~ 361 (847)
++..+..++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|
T Consensus 13 v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 333444444 455432 23455666666666655543 455555555555555
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.76 E-value=0.086 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.-++|+|+|.+|+||||++..+...+..+ ..++.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 45799999999999999999998866544 3444443
No 282
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.75 E-value=0.05 Score=60.93 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.5
Q ss_pred hHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 7 YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 7 lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+..+....+-|-++|++|.||||+|+++.+.+...
T Consensus 55 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 55 LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp HHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred HHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 333333333457799999999999999999987543
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.73 E-value=0.25 Score=52.21 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-.++ .|-..=.++-|.|.+|+||||+|..+...+..+-..++|++
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 344444 33233368889999999999999998765443335566654
No 284
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.72 E-value=0.091 Score=57.42 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+-|-|+|..|+|||++|+++.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 35788999999999999999988754
No 285
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.72 E-value=0.033 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+.++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 286
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.70 E-value=0.034 Score=56.93 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+-|.|+|..|.||||+|+++.+.....
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 347899999999999999999976543
No 287
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.69 E-value=0.041 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..+|+|.|+.|.||||+|+.+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 288
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.69 E-value=0.04 Score=58.24 Aligned_cols=29 Identities=34% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..-.+|||+|..|.||||||+.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45689999999999999999999986653
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.69 E-value=0.15 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.332 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-++|.++|.+|+||||++..+...++.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999998866544
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.67 E-value=0.038 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..+|+|+|+.|.||||+|+.+.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999765
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.67 E-value=0.25 Score=51.60 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-++|+|+|.+|+||||++..+...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988665
No 292
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.65 E-value=0.038 Score=56.41 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
....+|||.|+.|.||||+|+.+-..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467999999999999999999988644
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.65 E-value=0.065 Score=52.73 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.+|.|.|+.|.||||+|+.+.++.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999998776543
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.64 E-value=0.037 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|.|+.|.||||+|+.+..+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988754
No 295
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.63 E-value=0.13 Score=61.69 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++...|... .-.-+-|+|..|+||||+|+++.+++..
T Consensus 197 ~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 197 RAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 344444433 2234579999999999999999997643
No 296
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.63 E-value=0.028 Score=57.30 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|+||.|.||||+|+.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988654
No 297
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.11 Score=56.27 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-.+=|-++|++|.|||+||+++.+.....|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 345577999999999999999999876544
No 298
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.60 E-value=0.026 Score=60.36 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....|-|+|+.|+||||+|+++.+.....
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34567899999999999999998875544
No 299
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.58 E-value=0.03 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+++|+|..|.|||||++.+...+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 300
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.54 E-value=0.042 Score=53.24 Aligned_cols=24 Identities=54% Similarity=0.744 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 301
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.51 E-value=0.038 Score=56.52 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|+|+.|.||||+|+.+..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999987653
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.51 E-value=0.043 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|.|.|+.|.||||+|+.+..+..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 303
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.49 E-value=0.046 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
-.+|||.|+.|.||||+|+.+-+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998775
No 304
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.46 E-value=0.062 Score=56.46 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-.+|+|+|.+|.||||+++.+...+... .+.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4699999999999999999999866644 4555554
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.45 E-value=0.046 Score=53.36 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=27.8
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.++.++.. -..-+-+.|+|++|.||||+|.++.+.+.+
T Consensus 47 ~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 47 ALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34455543 223346899999999999999999987754
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.45 E-value=0.028 Score=54.08 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=17.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|.|.|+.|.||||+|+.+..+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999977643
No 307
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.44 E-value=0.072 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..=.+++|+|..|.|||||+|.+..-+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999865
No 308
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.42 E-value=0.093 Score=56.36 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-.+|+|+|..|+||||+++.+...+... .+.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 4799999999999999999999876543 4555554
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.40 E-value=0.037 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|.|+|..|.||||||+++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.39 E-value=0.062 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+|+|.|+.|.||||+|+.+.+++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999877544
No 311
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.36 E-value=0.18 Score=50.27 Aligned_cols=34 Identities=18% Similarity=-0.127 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.++-|+|..|.||||+|..+..+...+-..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 6888999999999999988888776554444444
No 312
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.35 E-value=0.032 Score=55.66 Aligned_cols=24 Identities=46% Similarity=0.685 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++++|+|..|.|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998855
No 313
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.35 E-value=0.1 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.-++|+|+|.+|+||||+++.+...+... ..++.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~l 137 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVL 137 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEE
Confidence 35799999999999999999999876544 334444
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.34 E-value=0.074 Score=59.22 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-.+|+|+|..|.||||+++.+...+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 4799999999999999999998866533 4555554
No 315
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.33 E-value=0.093 Score=55.73 Aligned_cols=35 Identities=34% Similarity=0.346 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.-.+|+|+|..|+||||+++.+...+... .+.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l 162 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVI 162 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEE
Confidence 35899999999999999999998865543 334444
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.29 E-value=0.032 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++|+|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999886543
No 317
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.28 E-value=0.15 Score=55.74 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHH-hc-----cCCceeEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL-KD-----QFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i-~~-----~F~~~~~v~ 50 (847)
++-.+|..+-..=.++.|+|..|+||||||+.+.-.. .. .-..++|+.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3444454333334699999999999999999765322 11 234477776
No 318
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.26 E-value=0.12 Score=55.67 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.9
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 11 ~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
......+|+|+|.+|+|||||+.++......
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999998876543
No 319
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.25 E-value=0.069 Score=56.09 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-.+|+|+|..|+||||+++.+...+... .+.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 4799999999999999999999876543 4555554
No 320
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.25 E-value=0.17 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+-++|+|..|+||||||+.+-+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 47899999999999999999997654
No 321
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.17 E-value=0.074 Score=54.60 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
=.+|+|+|..|.||||+++.+...+...+.+.+++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 369999999999999999999986654445666543
No 322
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.14 E-value=0.048 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
...+|+|.|+.|.||||+|+.+-.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 323
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.14 E-value=0.15 Score=54.11 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=25.8
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
+-.+|..+-..=+++-|+|.+|+||||+|..+.-.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44444433333479999999999999999988764
No 324
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.14 E-value=0.03 Score=55.33 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+|+|.|..|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999987653
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.14 E-value=0.053 Score=53.47 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-.+|+|.|+.|.||||+|+.+.++....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.12 E-value=0.059 Score=53.27 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999988664
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.11 E-value=0.054 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..-.+|||.|..|.||||+|+.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344799999999999999999998855
No 328
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.11 E-value=0.16 Score=54.60 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=51.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcee-EEEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASS-FLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~-~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~L 94 (847)
.+|+|+|..|.||||+++++.+.+...-..++ .+.+..+....... ....+.... .........++..|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~-~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVH-RDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBT-TTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeec-cccCCHHHHHHHHh
Confidence 49999999999999999999987655433333 33322211110000 000000000 01123345788888
Q ss_pred cCCcEEEEEcCCCCHHHHHH
Q 003104 95 CRKRVLVILDDVDQLEQLQA 114 (847)
Q Consensus 95 ~~kk~LlVLDDV~~~~~l~~ 114 (847)
....=+|++|.+.+.+.++.
T Consensus 194 ~~~PdvillDEp~d~e~~~~ 213 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRL 213 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHH
T ss_pred hhCcCEEecCCCCCHHHHHH
Confidence 88888889999876665443
No 329
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.09 E-value=0.049 Score=52.96 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|+|+|..|+|||||++.+...+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 330
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.06 E-value=0.066 Score=53.47 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.||||||+.+...+...=....|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999875543323444543
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.03 E-value=0.053 Score=55.68 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998754
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.02 E-value=0.065 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999988764
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.98 E-value=0.047 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
++++|+|+.|+|||||++.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999998765
No 334
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.94 E-value=0.22 Score=55.10 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=55.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEEecccccccCChHHHHHHHHHH-HhcC------CCccc---cch-
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSE-VLME------RDLII---WDV- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~-~l~~------~~~~~---~~~- 83 (847)
+-+||.|-.|+|||||++.+-+.+. .+-+.++|+. +.|.. ....++.+++... .+.. +..-+ .+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER~--rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGERT--REGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCCS--HHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccCc--HHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 4689999999999999999988764 4567777775 32221 1234455555432 1110 11100 111
Q ss_pred -------hhhHHHHHHHhc---CCcEEEEEcCCCCHHH
Q 003104 84 -------HKGINLIRWRLC---RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -------~~~~~~i~~~L~---~kk~LlVLDDV~~~~~ 111 (847)
....-.+.++++ +|.||+++||+....+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~ 280 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 280 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 112334556664 5899999999976654
No 335
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.94 E-value=0.06 Score=52.32 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+|+|.|+.|.||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987644
No 336
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.90 E-value=0.085 Score=50.42 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...+++|+|..|.|||||++.+...+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 35789999999999999999999876543
No 337
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.83 E-value=0.063 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+|+|.|+.|.||||+|+.+..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988654
No 338
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.83 E-value=0.38 Score=50.46 Aligned_cols=34 Identities=15% Similarity=-0.082 Sum_probs=26.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+...+..+. ....-++|+.|.||||+|+++-+.
T Consensus 8 ~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSE--GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444443 678889999999999999999875
No 339
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.80 E-value=0.054 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+|+|.|+.|.||||+|+.+-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 340
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.80 E-value=0.051 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~ 40 (847)
|.|+|..|.||||||+++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998764
No 341
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.78 E-value=0.077 Score=53.59 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=31.0
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
+-.+|..+-..=.++.|.|.+|+||||+|..+......+=..++|+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444333223358999999999999999887665443334566665
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.78 E-value=0.07 Score=56.36 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 12 ~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.....+|||.|..|.||||+|+.+...+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567999999999999999999877654
No 343
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.77 E-value=0.06 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|.|+.|+||||||+.+..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 344
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.14 Score=56.32 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.-.+=|-++|++|.|||+||++|.+.....|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 3456677999999999999999999876543
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.73 E-value=0.069 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..-.+|+|.|+.|.||||+|+.+-++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 346
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.71 E-value=0.15 Score=50.59 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....+|.|+|.+|+|||||+..+.......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 357899999999999999999988764333
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.70 E-value=0.056 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..|.|.|+.|.||||+|+.+..+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 348
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.65 E-value=0.059 Score=54.63 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..... ..-....++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6999999999999999999885222 2334445544
No 349
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.63 E-value=0.11 Score=54.33 Aligned_cols=28 Identities=36% Similarity=0.352 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-++|+|+|.+|+||||++..+...+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999998866544
No 350
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.61 E-value=0.23 Score=54.77 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEEecccccccCChHHHHHHHHHH-Hhc-----CCCccc---cchh-
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSE-VLM-----ERDLII---WDVH- 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~-~l~-----~~~~~~---~~~~- 84 (847)
+-++|.|..|+|||||++.+-+.+. .+-+.++|+. +.|.. ....++.+++... .+. .+..-+ .+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER~--rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERT--REGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCCH--HHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCcc--hHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 4789999999999999999988764 3456667654 32221 1234455555443 111 011101 1111
Q ss_pred -------hhHHHHHHHh---cCCcEEEEEcCCCCHHH
Q 003104 85 -------KGINLIRWRL---CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 -------~~~~~i~~~L---~~kk~LlVLDDV~~~~~ 111 (847)
...-.+-+++ ++|.||+++||+....+
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~ 267 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 267 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 1223344554 46999999999976654
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.53 E-value=0.072 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|+|.|+.|.||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997764
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.46 E-value=0.067 Score=56.45 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc-cCCceeEE
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 49 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~-~F~~~~~v 49 (847)
..-.+|||.|..|.||||||+.+...+.. ...+.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 34579999999999999999999886652 23344444
No 353
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.42 E-value=0.039 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=16.1
Q ss_pred EEEEEEcCCCchHHHHHHHHH-HHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLY-NTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy-~~i 39 (847)
.+|||+|..|.|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 354
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.40 E-value=0.056 Score=52.61 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=8.3
Q ss_pred ccCcCCCEEEcCCC
Q 003104 348 KPLKELKFMNLSHS 361 (847)
Q Consensus 348 ~~l~~L~~L~L~~~ 361 (847)
.+-+.|+.|+|+++
T Consensus 38 ~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 38 EDDTDLKEVNINNM 51 (197)
T ss_dssp TTCSSCCEEECTTC
T ss_pred hcCCCccEEECCCC
Confidence 34456666666654
No 355
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.36 E-value=0.071 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|.|.|+.|.||||+|+.+..+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998754
No 356
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.36 E-value=0.02 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 003104 18 IGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i 39 (847)
|-|+|..|.|||++|+++++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6699999999999999998753
No 357
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.33 E-value=0.061 Score=54.45 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.. .+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 57 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRL 57 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEE
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 34 6899999999999999999987432 23455555
No 358
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.32 E-value=0.04 Score=56.73 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-|-|+|..|+||||+|+++.+.....|
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 367999999999999999999775443
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.25 E-value=0.066 Score=54.00 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEEC
Confidence 5899999999999999998876332 234555553
No 360
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.24 E-value=0.18 Score=56.56 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++...|.... ..-+-|+|.+|+||||+|+++...+...
T Consensus 191 ~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 191 RVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp HHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred HHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3444554322 1234699999999999999999987543
No 361
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.24 E-value=0.17 Score=55.86 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..++|.|+|.||+||||+|-.+-..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999998866654
No 362
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.22 E-value=0.52 Score=52.22 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.-.++-|.|.+|+||||+|..+...+..+=..++|++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3358889999999999999998776554423455543
No 363
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.21 E-value=0.39 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..++|.|+|+.|.||||+|+++..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999987653
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.20 E-value=0.11 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.-.+|.|.|+.|.||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 365
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.18 E-value=0.066 Score=53.59 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 64 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLE 64 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEC
Confidence 4899999999999999999886432 234555553
No 366
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.17 E-value=0.081 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|+|.|+.|.||||+|+.+..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987653
No 367
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.15 E-value=0.14 Score=56.23 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=50.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCC----ceeEEEecccccccCChHHHHHHHHHH-HhcCCCc--cccchh-----
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPLQEQLLSE-VLMERDL--IIWDVH----- 84 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~----~~~~v~~~~~~s~~~~l~~l~~~il~~-~l~~~~~--~~~~~~----- 84 (847)
-++|.|..|+|||||+..+-+....+-+ .++|+. +.|.. ....++.+++... .+...-. ...+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~--~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITF--EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECH--HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCc--HHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 4789999999999999998887654434 445544 22211 1234444444332 1111000 001111
Q ss_pred ---hhHHHHHHHhc---CCcEEEEEcCCCCHH
Q 003104 85 ---KGINLIRWRLC---RKRVLVILDDVDQLE 110 (847)
Q Consensus 85 ---~~~~~i~~~L~---~kk~LlVLDDV~~~~ 110 (847)
.....+.++++ +|.||+++||+....
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A 261 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTNYA 261 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHH
Confidence 11234556653 789999999986544
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.12 E-value=0.083 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|+|.|+.|.||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999987653
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.11 E-value=0.064 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..|.|.|+.|.||||+|+.+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988754
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.08 E-value=0.17 Score=53.88 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=48.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHHHHhcCCCcccc--chhhhHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW--DVHKGINLIRWR 93 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~--~~~~~~~~i~~~ 93 (847)
.+++|+|..|.|||||++.+...+.. -++.+.+....+..... . .+....- .-......|...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~-------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-H-------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-C-------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-c-------------hhEEEEEeCCChhHHHHHHHH
Confidence 48999999999999999999885543 35667766543321110 0 0000000 112334566677
Q ss_pred hcCCcEEEEEcCCCCH
Q 003104 94 LCRKRVLVILDDVDQL 109 (847)
Q Consensus 94 L~~kk~LlVLDDV~~~ 109 (847)
|..+.=++++|++...
T Consensus 237 L~~~p~ilildE~~~~ 252 (330)
T 2pt7_A 237 LRMRPDRIILGELRSS 252 (330)
T ss_dssp TTSCCSEEEECCCCST
T ss_pred hhhCCCEEEEcCCChH
Confidence 7777778889998653
No 371
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.06 E-value=0.086 Score=53.14 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
....+|+|.|+.|.||||+|+.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998765
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.05 E-value=0.081 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+-+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 373
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.02 E-value=0.15 Score=50.51 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
....+|+|+|.+|+|||||+.++.......
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 357899999999999999999988765444
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.90 E-value=0.077 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.90 E-value=0.15 Score=53.41 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
-++|+|+|.+|+||||+|+.+...+... ..++.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 4799999999999999999998866543 3444443
No 376
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.86 E-value=0.077 Score=54.86 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=25.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~ 68 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFD 68 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEEC
Confidence 4899999999999999999876332 334555553
No 377
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.76 E-value=0.063 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999875
No 378
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.75 E-value=0.21 Score=56.13 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.7
Q ss_pred hHHHHhHhcCC-------CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 2 EKMNGYLEAGL-------DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 2 ~~i~~lL~~~~-------~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
+++.+++.... ...++|.|+|.+|+||||++.++-..+..+
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 35566665421 346899999999999999999998766544
No 379
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.74 E-value=0.088 Score=53.41 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 62 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITID 62 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 5899999999999999999987432 234555553
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.74 E-value=0.21 Score=53.43 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=25.7
Q ss_pred cCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 10 AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 10 ~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
....+..+|+|+|.+|+||||++..+...+.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3345678999999999999999999987554
No 381
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.73 E-value=0.081 Score=54.33 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 66 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVN 66 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 4899999999999999999876432 234556553
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.72 E-value=0.12 Score=55.98 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 11 ~~~~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+-..-++|+|+|+.|.|||||++.+.....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444457999999999999999999998543
No 383
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.70 E-value=0.086 Score=58.25 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.++|+|+|.+|+||||+|.++-.....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4699999999999999999988866544
No 384
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.67 E-value=0.088 Score=53.63 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH-hccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL-KDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i-~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+ .....+.+++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 489999999999999999998742 12234556553
No 385
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.65 E-value=0.083 Score=54.36 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.++||+|..|.|||||++.+..-+. ...+.+++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~ 71 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLL 71 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEEC
Confidence 4899999999999999999887432 235666653
No 386
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.62 E-value=0.5 Score=49.32 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=33.1
Q ss_pred hHHHHhHh----cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC--CceeEEE
Q 003104 2 EKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLA 50 (847)
Q Consensus 2 ~~i~~lL~----~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F--~~~~~v~ 50 (847)
.++-..|. .+-.. .++-|+|..|+||||||-.+......++ ..++|++
T Consensus 12 ~~LD~~LGg~~~GGl~~-GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQS-GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCS-EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcC-CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 35566666 33222 2689999999999999888777655442 4567775
No 387
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.59 E-value=0.087 Score=53.32 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEE
Confidence 4899999999999999999987432 23455555
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.59 E-value=0.11 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|.|.|+.|.||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 389
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.56 E-value=0.24 Score=52.88 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=27.1
Q ss_pred HhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 8 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 8 L~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++..-..-.+|+|+|..|+|||||.+.+...+..
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3334456689999999999999999999875543
No 390
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.54 E-value=0.12 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999998773
No 391
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.54 E-value=0.088 Score=53.90 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. .-.+.+++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 4899999999999999999987433 234555553
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.54 E-value=0.11 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
..|.|.|+.|.||||+|+.+..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998875
No 393
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.52 E-value=0.088 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~ 84 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIID 84 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEEC
Confidence 4899999999999999999887433 234566553
No 394
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.50 E-value=0.08 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.-.+|.|+|+.|.||||+|+.+..+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 395
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.49 E-value=0.094 Score=54.02 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=26.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh-ccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~-~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ....+.+++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4899999999999999999987431 2234666653
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.47 E-value=0.11 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|.|.|+.|.||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 397
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.47 E-value=0.091 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+++|+|..|.|||||++.+..-+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998743
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.44 E-value=0.078 Score=52.58 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=24.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~ 68 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIY 68 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEE
Confidence 4799999999999999999987432 22344444
No 399
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.39 E-value=0.094 Score=53.32 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~ 69 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLID 69 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 4899999999999999999877432 234566553
No 400
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.39 E-value=0.14 Score=54.97 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=33.7
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+-.+|. .+-..=+++.|+|.+|+||||||..+...+...=..++|+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444454 23233468999999999999999998876554445567776
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.39 E-value=0.11 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..|.|.|+.|.||||+|+.+.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988754
No 402
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.38 E-value=0.092 Score=55.34 Aligned_cols=24 Identities=38% Similarity=0.366 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++|.|+|+.|+||||||+.+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998864
No 403
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.33 E-value=0.073 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.-|-|+|..|+|||++|+++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3566999999999999999998543
No 404
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.29 E-value=0.097 Score=53.67 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. . .+.+++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~ 79 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIG 79 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEEC
Confidence 4899999999999999999987544 2 5666664
No 405
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.28 E-value=0.097 Score=53.49 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE
Confidence 4899999999999999999887432 23455555
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.22 E-value=0.16 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
...+||-|.|++|.||||.|+.+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.21 E-value=0.17 Score=52.86 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=27.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCC-ceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~-~~~~v~ 50 (847)
.+++|+|..|+|||||++.+...+...-. .+.|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999886654422 344544
No 408
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.19 E-value=0.061 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...+|||.|..|.||||+|+.+-+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987543
No 409
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.13 E-value=0.11 Score=54.39 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+-|-|+|..|+||||+|+++.+....
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45679999999999999999997743
No 410
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.11 E-value=0.1 Score=53.04 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=27.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+... +.+++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 489999999999999999998865544 666654
No 411
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.06 E-value=0.16 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 003104 18 IGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 18 igI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
+.++|..|+||||+|+++.+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999997643
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.04 E-value=0.11 Score=53.75 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~ 79 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLD 79 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEEC
Confidence 4899999999999999999987433 234566553
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.03 E-value=0.22 Score=50.76 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999987665
No 414
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.01 E-value=0.11 Score=53.56 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=25.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. ...+.+++
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~ 66 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLY 66 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEE
Confidence 4899999999999999999886432 23455554
No 415
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.92 E-value=0.11 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 416
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.92 E-value=0.11 Score=53.86 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=25.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.+++|+|..|.|||||++.+..-+. .-.+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEE
Confidence 4899999999999999999987433 22455554
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.90 E-value=0.13 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
..|+|+|.+|+|||||.+++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999998865
No 418
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.86 E-value=0.22 Score=51.00 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
++|+|.|-||+||||+|..+-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 688999999999999999988866654
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.86 E-value=0.14 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.-|.|+|.+|+|||||++++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999876
No 420
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.82 E-value=0.12 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.|+|+|..|+|||||.+.+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 421
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.78 E-value=0.14 Score=49.79 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCCCCcEEeccCCCCcc-----ccCccccCCCCccEEEecCccCCC----cCCccccCCCcccEEEecCcccc-----cc
Q 003104 396 TLKRLILLNLKDCRNLV-----SFPKNVCLMKSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR-----QI 461 (847)
Q Consensus 396 ~L~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~-----~l 461 (847)
+-+.|+.|+|++++.++ .+...+..-+.|+.|+|++|.... .+.+.+..-+.|+.|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 33455566665532222 123334445566666666665432 22333444456777777777666 33
Q ss_pred CccccCCCCCCEEEeCCC
Q 003104 462 PPSIVQLVNLKIFSLHGC 479 (847)
Q Consensus 462 p~~i~~l~~L~~L~L~~~ 479 (847)
-..+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 444555566777777654
No 422
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.78 E-value=0.13 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.-.|+|+|..|+|||||.+.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45789999999999999999887
No 423
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.69 E-value=0.23 Score=52.16 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
...++|+|+|-||+||||+|-.+-..+..+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356899999999999999999888766554
No 424
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.59 E-value=0.11 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.683 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999876
No 425
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.58 E-value=0.14 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+|.|.|+.|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 426
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.57 E-value=0.23 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++++|+|.+|.||||||+.+...+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999875543
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.57 E-value=0.13 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+.+|+|..|.|||||+++++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998743
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.48 E-value=1.2 Score=49.27 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCceeEEEecccccccCChHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~-F~~~~~v~~~~~~s~~~~l~~l~~~il~~ 71 (847)
.-.++.|.|.+|+||||+|..+...+..+ =..++|+. -......+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 33588899999999999999988765532 23456654 223344566555543
No 429
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.47 E-value=0.1 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.118 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.-.+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3479999999999999999998765
No 430
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.44 E-value=0.45 Score=52.84 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred EEEEEEcCCCchHHHH-HHHHHHHHhc------cCCc-eeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch-
Q 003104 16 RFIGICGMGGIGKTTL-AKVLYNTLKD------QFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTL-A~~vy~~i~~------~F~~-~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~- 83 (847)
+-++|.|-.|+||||| +..|.|+... +-+. ++|+. +.+.. ....++.+++...=..++..-+ .+.
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~-IGeR~--~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA-IGQKR--STVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE-ESCCH--HHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE-CCCCc--HHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 3679999999999999 5677775552 3454 44544 32211 1233444444432000000000 111
Q ss_pred -------hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 -------HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -------~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
......+-+++ ++|.+||++||+....+
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~ 276 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAV 276 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHH
Confidence 01122344544 57999999999865543
No 431
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.43 E-value=0.2 Score=48.73 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=22.8
Q ss_pred HhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 003104 6 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 6 ~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
+.+....... .|+|+|.+|+|||||.+++.+
T Consensus 17 ~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3344433444 578999999999999998864
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.42 E-value=0.095 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
++|.|+|+.|+||||||..+..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999988754
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.29 E-value=0.13 Score=49.33 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+|+|.+|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998765
No 434
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.29 E-value=0.11 Score=56.81 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.4
Q ss_pred HHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 003104 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 4 i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
+.+.|..-.+...+|||+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 4444443334556999999999999999999987
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.27 E-value=0.18 Score=50.50 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-.+|.|.|+.|.||||+|+.+.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999998765
No 436
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.25 E-value=0.13 Score=55.45 Aligned_cols=25 Identities=40% Similarity=0.399 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+.|-++|.+|+||||+|+++.+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999998764
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.24 E-value=0.19 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
=.+++|+|..|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3689999999999999999999866
No 438
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.22 E-value=0.13 Score=55.73 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
..|-++|..|+||||+|+++.+....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45779999999999999999987643
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.18 E-value=0.17 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|.|.|+.|+||||||..+..++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998754
No 440
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.14 E-value=0.2 Score=46.66 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
..--|.|+|.+|+|||||++++.+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 345678999999999999999876
No 441
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.13 E-value=0.41 Score=57.23 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
++...|.... ..-|-++|.+|+||||+|+++.+.+..
T Consensus 191 ~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 191 RVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 4445554322 123569999999999999999998743
No 442
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.12 E-value=0.17 Score=54.22 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc--C---Cce-eEEE
Q 003104 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--F---EAS-SFLA 50 (847)
Q Consensus 3 ~i~~lL~~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~--F---~~~-~~v~ 50 (847)
.+-.+|..+-..=++++|+|..|.|||||++.+...+... . .+. +|+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 3444555443445899999999999999999998865322 1 234 7776
No 443
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.08 E-value=0.15 Score=58.23 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
-.++.|+|..|+||||||+++.......|
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 45899999999999999999999775443
No 444
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.04 E-value=0.21 Score=59.22 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-.+=|-++|++|.|||||||+|.+....+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34678899999999999999999876543
No 445
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.01 E-value=1 Score=43.81 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.|.|=|.-|.||||.|+.+.+.+..+-..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478889999999999999999887765444444
No 446
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.98 E-value=0.15 Score=52.32 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
.+++|+|..|.|||||++.+..-+ ...+.+++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~ 63 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL--PYSGNIFIN 63 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEEC
Confidence 389999999999999999998754 345666553
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.96 E-value=0.16 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|.++|.+|+|||||++++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 448
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.94 E-value=0.28 Score=50.93 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.++|+|.|-||+||||+|..+-..+..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3789999999999999999988766544
No 449
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.84 E-value=0.24 Score=53.58 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeE-EEecccccccCChHHHHHHHHHHHhcCCCccccchhhhHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF-LANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~-v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~~~~~~~~~~i~~~ 93 (847)
-.+|+|+|..|.||||+++++...+.....+.+. +.+..+....... .+..+..... +.......++..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g~-~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGE-DTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBTT-TBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecCC-CHHHHHHHHHHH
Confidence 3689999999999999999999866554345553 3321110000000 0000000000 112335677788
Q ss_pred hcCCcEEEEEcCCCCHHHH
Q 003104 94 LCRKRVLVILDDVDQLEQL 112 (847)
Q Consensus 94 L~~kk~LlVLDDV~~~~~l 112 (847)
|....=.|++|.+.+.+.+
T Consensus 206 L~~~pd~illdE~~d~e~~ 224 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETV 224 (372)
T ss_dssp TTSCCSEEEESCCCSHHHH
T ss_pred hhhCcCEEEECCCCCHHHH
Confidence 8777778899999765543
No 450
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.78 E-value=0.17 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
-.|.|+|.+|+|||||+.++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3678999999999999999886
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.65 E-value=0.18 Score=48.62 Aligned_cols=25 Identities=36% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.--|.|+|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999998877643
No 452
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.63 E-value=0.19 Score=48.17 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
...|+|+|.+|+|||||.+.+.+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999876
No 453
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.59 E-value=0.12 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-|-|+|..|+|||++|+++.+..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 46699999999999999999854
No 454
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.17 Score=55.51 Aligned_cols=31 Identities=39% Similarity=0.471 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.-.+=|-++|++|.|||+||+++.+.....|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3456688999999999999999999876443
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.57 E-value=0.21 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.305 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
-++|.|.|+.|+||||||..+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.52 E-value=0.21 Score=50.42 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
..|.|.|..|.||||+|+.+.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999998764
No 457
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.51 E-value=0.16 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+++|+|..|.|||||++.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999874
No 458
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.43 E-value=0.32 Score=58.11 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
..+-++|..|+|||++|+++.+.....
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~ 548 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGD 548 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 468899999999999999999977443
No 459
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.43 E-value=0.34 Score=53.19 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
-++|+|+|.+|+||||++..+...+..+ ..++.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vll 131 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLL 131 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 5799999999999999999999877655 334444
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.41 E-value=0.56 Score=46.31 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.+|.|-|..|.||||+|+.+.+.+..+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999987654
No 461
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.34 E-value=0.19 Score=57.17 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+|+|+|+.|.||||||+.+...+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 68999999999999999999997764
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.34 E-value=0.18 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.-.+=|-++|++|.|||+||+++.+.....
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 335677899999999999999999986644
No 463
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.33 E-value=0.23 Score=47.48 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.....|.|+|.+|+|||||.+++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999988764
No 464
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.28 E-value=0.18 Score=54.17 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=24.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEE
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v 49 (847)
.++||+|..|.|||||++.+..-.. .-.+.+++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i 87 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLV 87 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEE
Confidence 5899999999999999999876332 22455554
No 465
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.27 E-value=0.14 Score=57.62 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
-+-|-|+|..|.|||++|+++.+...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999988753
No 466
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.20 E-value=0.23 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|.|.|+.|+||||||..+..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999988754
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.19 E-value=0.32 Score=47.42 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.7
Q ss_pred EEEEEE-cCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 16 RFIGIC-GMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 16 ~vigI~-GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++|+|+ +-||+||||+|-.+-..+..+=..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 689999 57999999999998886665433344443
No 468
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.19 E-value=0.2 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+|+|..|+|||||.+++.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999876
No 469
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.16 E-value=0.3 Score=54.20 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCcc-c--cch-------
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-I--WDV------- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~-~--~~~------- 83 (847)
+-++|.|-.|+|||||| ..|.|.. .-+.. +|+. +.+.. ....++.+++...=..++..- . .+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~-IGeR~--~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVA-IGQKK--SAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEE-ESCCH--HHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEE-cCCCc--HHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 46899999999999995 5777754 34543 4443 32221 123344444443200011000 0 111
Q ss_pred -hhhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 84 -HKGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 -~~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
......+-+++ ++|.+||++||+....+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr~A~ 281 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKHAV 281 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHHHHH
Confidence 11122344555 57999999999865543
No 470
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.08 E-value=0.17 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+|+|.|+.|.||||+|+.+-.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999987754
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.2 Score=55.19 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccC
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F 43 (847)
.-.+=|-++|++|.|||+||++|.+.....|
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3346788999999999999999999876443
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.02 E-value=0.18 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~~ 38 (847)
.+.+++|.|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999874
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.01 E-value=0.22 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
.+|.|.|+.|.||||+|+.+-.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999765
No 474
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.00 E-value=0.21 Score=52.32 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy 36 (847)
.+++|+|..|+|||||.+++.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999988
No 475
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.97 E-value=0.22 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
...++|+|..|.|||||++.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999988543
No 476
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.95 E-value=0.18 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-|-++|..|+||||+|+++.+.....
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57799999999999999999876543
No 477
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.87 E-value=0.36 Score=53.55 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=48.2
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhccCCce-eEEEecccccccCChHHHHHHHHHHHhcCCCccc---cchh------
Q 003104 16 RFIGICGMGGIGKTTLA-KVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDVH------ 84 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA-~~vy~~i~~~F~~~-~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~~------ 84 (847)
+-++|.|-.|+|||||| ..|.|.. +-+.. +|+. +.+.. ....++.+++...=..++..-+ .+..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~-iGeR~--~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVA-IGQKQ--STVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEE-ESCCH--HHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEE-CCCcc--hHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 46799999999999995 5777754 34543 4443 32221 1234444444432100111100 1111
Q ss_pred --hhHHHHHHHh--cCCcEEEEEcCCCCHHH
Q 003104 85 --KGINLIRWRL--CRKRVLVILDDVDQLEQ 111 (847)
Q Consensus 85 --~~~~~i~~~L--~~kk~LlVLDDV~~~~~ 111 (847)
.....+-+++ ++|.+||++||+....+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~ 268 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQAA 268 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHHHH
Confidence 1112344555 57999999999865543
No 478
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.80 E-value=0.2 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
..|+|+|.+|+|||||.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999875
No 479
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.78 E-value=0.47 Score=61.47 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEE
Q 003104 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (847)
Q Consensus 3 ~i~~lL~-~~~~~v~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~ 50 (847)
++..+|. .+-..-++|-|+|+.|+||||||.++-.....+=..++|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555665 33344578999999999999999999887666656677776
No 480
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.77 E-value=0.24 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 003104 14 DVRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 14 ~v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
....|.|+|.+|+|||||..++.+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999998876
No 481
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.70 E-value=1.3 Score=46.98 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=32.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCceeEEEecccccccCChHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~~~~~v~~~~~~s~~~~l~~l~~~il~ 70 (847)
.++.|.|.+|+||||+|..+...+..+=..++|++ -.-....+...+++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHH
Confidence 58889999999999999998776554333445543 23334455555544
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.68 E-value=0.22 Score=47.58 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.--|.|+|.+|+|||||++++.+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999998876
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.68 E-value=0.18 Score=60.46 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
-+-|.|+|..|.||||||+++.+.+...
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 4578999999999999999998866443
No 484
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.67 E-value=0.2 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|.|+|.+|+|||||.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999988753
No 485
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.64 E-value=0.36 Score=53.18 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=50.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-cC---CceeEEEecccccccCChHHHHHHHHHHHhcCCCccc---cch-----
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QF---EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII---WDV----- 83 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~-~F---~~~~~v~~~~~~s~~~~l~~l~~~il~~~l~~~~~~~---~~~----- 83 (847)
+-++|.|-.|+|||||+..|-+.... +- +.++|+. +.|.. ....++.+++...=..++..-+ .+.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iGER~--~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA-MGITN--EEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EEECH--HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE-ccCCc--HHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 35789999999999999988885432 11 3445544 22221 1234455555432100111100 111
Q ss_pred ---hhhHHHHHHHhc---CCcEEEEEcCCCCHHH
Q 003104 84 ---HKGINLIRWRLC---RKRVLVILDDVDQLEQ 111 (847)
Q Consensus 84 ---~~~~~~i~~~L~---~kk~LlVLDDV~~~~~ 111 (847)
....-.+.++++ +|.||+++||+....+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~ 263 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITNYAE 263 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHH
Confidence 112234445554 6999999999865544
No 486
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.60 E-value=0.23 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.--|.|+|.+|+|||||.+++.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34688999999999999998876
No 487
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.55 E-value=0.28 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
+|-|.|++|.||||.|+.+-.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999988754
No 488
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.52 E-value=0.35 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.-|+|+|.+|+|||||.+++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999876
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.48 E-value=0.28 Score=45.78 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLY 36 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy 36 (847)
+--|.|+|.+|+|||||.+++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3458899999999999999875
No 490
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.47 E-value=0.44 Score=47.24 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i~~~ 42 (847)
.|-+.|.||+||||+|-.+-.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47788999999999988888765543
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.46 E-value=0.42 Score=46.93 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=25.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCC
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~~~F~ 44 (847)
+.|.|=|.-|.||||+|+.+.+.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998865444
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.42 E-value=0.3 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~ 37 (847)
.--|.|+|.+|+|||||.+++.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45689999999999999998865
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.39 E-value=0.44 Score=51.05 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 13 ~~v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
.+..+|+|+|.+|+|||||..++-.....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 34789999999999999999999875543
No 494
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.39 E-value=0.19 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999885
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.36 E-value=0.25 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 003104 16 RFIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~ 37 (847)
--|.|+|..|+|||||.+++.+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4588999999999999999876
No 496
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.36 E-value=0.25 Score=45.85 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|+|+|..|+|||||..++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999988876
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.33 E-value=0.25 Score=46.03 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYN 37 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~ 37 (847)
-|.|+|..|+|||||.+++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.31 E-value=0.27 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 003104 17 FIGICGMGGIGKTTLAKVLYNTL 39 (847)
Q Consensus 17 vigI~GmgGiGKTTLA~~vy~~i 39 (847)
.+||.|+.|.||||+|+.+-++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999988765
No 499
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.30 E-value=0.47 Score=52.03 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 003104 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (847)
Q Consensus 16 ~vigI~GmgGiGKTTLA~~vy~~i~ 40 (847)
+-++|.|..|+|||||+..+-+...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3578999999999999998887543
No 500
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.27 E-value=0.59 Score=46.43 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 003104 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (847)
Q Consensus 15 v~vigI~GmgGiGKTTLA~~vy~~i~~ 41 (847)
-.+|.|-|..|.||||+|+.+.+.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999997765
Done!