BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003105
         (847 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BSR|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
           Immunodominant Viral Peptides Complexed To Hla-B2705
 pdb|2BSS|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
           Immunodominant Viral Peptides Complexed To Hla-B2705
          Length = 276

 Score = 30.0 bits (66), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 648 HRNAHDGSDSESENVDLNSWT 668
           H+NA+DG D  + N DL+SWT
Sbjct: 114 HQNAYDGKDYIALNEDLSSWT 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,874,825
Number of Sequences: 62578
Number of extensions: 862611
Number of successful extensions: 1725
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 3
length of query: 847
length of database: 14,973,337
effective HSP length: 107
effective length of query: 740
effective length of database: 8,277,491
effective search space: 6125343340
effective search space used: 6125343340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)