Query 003105
Match_columns 847
No_of_seqs 391 out of 1647
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2214 Predicted esterase of 100.0 6E-117 1E-121 974.7 39.3 530 57-611 3-543 (543)
2 cd07230 Pat_TGL4-5_like Triacy 100.0 2.1E-99 4E-104 845.8 39.1 402 158-571 1-420 (421)
3 cd07229 Pat_TGL3_like Triacylg 100.0 2.1E-99 4E-104 834.3 35.8 370 153-570 1-391 (391)
4 cd07232 Pat_PLPL Patain-like p 100.0 5.6E-95 1.2E-99 807.2 37.2 388 162-566 1-407 (407)
5 cd07231 Pat_SDP1-like Sugar-De 100.0 6.9E-95 1.5E-99 776.8 29.6 323 162-570 1-323 (323)
6 cd07206 Pat_TGL3-4-5_SDP1 Tria 100.0 9.4E-85 2E-89 696.5 29.5 297 162-564 1-298 (298)
7 PRK10279 hypothetical protein; 100.0 1.7E-35 3.8E-40 318.9 27.7 270 228-556 4-297 (300)
8 PF11815 DUF3336: Domain of un 100.0 3.8E-35 8.3E-40 286.4 15.7 131 94-226 9-145 (145)
9 cd07225 Pat_PNPLA6_PNPLA7 Pata 100.0 4.8E-32 1E-36 293.1 26.0 275 228-563 14-305 (306)
10 COG1752 RssA Predicted esteras 100.0 1.9E-31 4.1E-36 287.2 24.4 186 226-454 8-203 (306)
11 cd07228 Pat_NTE_like_bacteria 100.0 1.5E-31 3.3E-36 265.9 18.5 173 230-449 1-175 (175)
12 cd07205 Pat_PNPLA6_PNPLA7_NTE1 100.0 1.8E-31 3.9E-36 264.2 18.8 174 230-449 1-175 (175)
13 cd07207 Pat_ExoU_VipD_like Exo 100.0 1E-31 2.3E-36 268.6 14.9 176 232-435 2-187 (194)
14 cd07208 Pat_hypo_Ecoli_yjju_li 100.0 9.8E-31 2.1E-35 275.4 22.5 181 232-452 1-184 (266)
15 cd07210 Pat_hypo_W_succinogene 100.0 1.4E-30 3.1E-35 269.5 19.2 177 230-453 1-178 (221)
16 cd07227 Pat_Fungal_NTE1 Fungal 100.0 5.3E-30 1.1E-34 272.8 18.8 180 229-451 10-191 (269)
17 cd07209 Pat_hypo_Ecoli_Z1214_l 99.9 2.4E-27 5.2E-32 243.8 15.6 165 232-453 1-169 (215)
18 cd07198 Patatin Patatin-like p 99.9 2.2E-27 4.8E-32 235.2 12.1 170 232-443 1-172 (172)
19 cd07204 Pat_PNPLA_like Patatin 99.9 8.2E-25 1.8E-29 229.6 17.0 162 231-434 1-169 (243)
20 cd07218 Pat_iPLA2 Calcium-inde 99.9 6.7E-24 1.5E-28 223.3 18.8 169 231-448 2-176 (245)
21 cd07221 Pat_PNPLA3 Patatin-lik 99.9 8E-24 1.7E-28 223.6 19.3 168 231-446 2-176 (252)
22 cd07224 Pat_like Patatin-like 99.9 8E-24 1.7E-28 220.8 18.9 156 231-433 1-164 (233)
23 cd07222 Pat_PNPLA4 Patatin-lik 99.9 8.1E-24 1.8E-28 222.5 19.0 162 231-435 1-171 (246)
24 KOG2968 Predicted esterase of 99.9 5.3E-23 1.1E-27 238.8 19.5 283 217-560 826-1126(1158)
25 cd07211 Pat_PNPLA8 Patatin-lik 99.9 9.1E-23 2E-27 219.9 17.1 178 228-434 7-204 (308)
26 cd07219 Pat_PNPLA1 Patatin-lik 99.9 9.7E-23 2.1E-27 224.7 17.3 175 226-447 9-190 (382)
27 cd07214 Pat17_isozyme_like Pat 99.9 1.5E-21 3.3E-26 214.9 25.6 181 230-433 5-210 (349)
28 cd07220 Pat_PNPLA2 Patatin-lik 99.9 2.7E-22 5.9E-27 211.8 18.5 163 228-434 3-174 (249)
29 COG4667 Predicted esterase of 99.9 2.1E-21 4.6E-26 203.6 24.3 277 224-554 6-286 (292)
30 PF01734 Patatin: Patatin-like 99.9 1.7E-23 3.7E-28 201.1 5.4 177 232-434 1-202 (204)
31 cd07215 Pat17_PNPLA8_PNPLA9_li 99.9 9.2E-21 2E-25 206.7 26.8 176 231-435 2-202 (329)
32 cd07223 Pat_PNPLA5-mammals Pat 99.9 2.9E-22 6.3E-27 220.5 14.3 161 227-433 7-178 (405)
33 cd07217 Pat17_PNPLA8_PNPLA9_li 99.9 1E-21 2.2E-26 216.0 18.0 175 229-433 1-203 (344)
34 cd07212 Pat_PNPLA9 Patatin-lik 99.9 1.9E-21 4.1E-26 211.3 16.2 158 232-438 2-187 (312)
35 cd07213 Pat17_PNPLA8_PNPLA9_li 99.9 2.5E-21 5.3E-26 207.5 16.3 165 230-435 3-182 (288)
36 cd07216 Pat17_PNPLA8_PNPLA9_li 99.9 1.2E-21 2.6E-26 211.7 13.7 181 231-439 3-214 (309)
37 TIGR03607 patatin-related prot 99.8 1.7E-18 3.7E-23 204.8 15.7 206 229-438 3-293 (739)
38 cd07199 Pat17_PNPLA8_PNPLA9_li 99.8 1.6E-17 3.4E-22 174.9 21.3 150 231-450 1-170 (258)
39 cd01819 Patatin_and_cPLA2 Pata 99.8 1.6E-18 3.5E-23 170.3 9.3 150 232-445 1-153 (155)
40 COG3621 Patatin [General funct 99.6 3.2E-14 7E-19 153.1 14.0 182 230-436 10-209 (394)
41 KOG4231 Intracellular membrane 99.4 8.7E-13 1.9E-17 147.7 9.4 175 228-433 416-613 (763)
42 KOG3773 Adiponutrin and relate 99.0 1.6E-09 3.4E-14 117.7 12.2 165 227-432 4-173 (354)
43 cd00147 cPLA2_like Cytosolic p 98.0 5.3E-06 1.1E-10 94.9 5.7 52 226-277 40-95 (438)
44 cd07202 cPLA2_Grp-IVC Group IV 96.4 0.0036 7.7E-08 71.6 4.9 51 226-276 37-91 (430)
45 cd07200 cPLA2_Grp-IVA Group IV 95.4 0.015 3.3E-07 68.1 4.6 51 226-276 42-96 (505)
46 KOG1325 Lysophospholipase [Lip 94.7 0.039 8.4E-07 65.2 5.2 87 186-279 12-109 (571)
47 smart00022 PLAc Cytoplasmic ph 94.7 0.048 1E-06 64.7 6.0 59 226-284 74-142 (549)
48 PF01735 PLA2_B: Lysophospholi 93.7 0.062 1.3E-06 63.1 4.3 48 230-277 1-59 (491)
49 cd07201 cPLA2_Grp-IVB-IVD-IVE- 93.4 0.094 2E-06 61.8 5.0 51 226-276 51-105 (541)
50 KOG0513 Ca2+-independent phosp 93.2 0.18 3.8E-06 59.5 6.9 175 225-434 290-477 (503)
51 cd07203 cPLA2_Fungal_PLB Funga 91.8 0.28 6E-06 58.3 6.2 61 226-286 61-134 (552)
52 KOG0513 Ca2+-independent phosp 81.9 2.1 4.5E-05 50.8 5.5 188 228-434 34-267 (503)
53 PF03575 Peptidase_S51: Peptid 81.3 7.1 0.00015 38.6 8.3 39 230-271 37-82 (154)
54 PRK05282 (alpha)-aspartyl dipe 80.1 5.1 0.00011 43.1 7.2 80 188-276 45-131 (233)
55 smart00827 PKS_AT Acyl transfe 77.0 4.7 0.0001 43.3 6.0 47 241-287 66-113 (298)
56 cd03145 GAT1_cyanophycinase Ty 73.3 8.8 0.00019 40.4 6.7 42 230-274 85-133 (217)
57 TIGR03131 malonate_mdcH malona 72.1 8.2 0.00018 41.7 6.4 48 239-286 58-106 (295)
58 PF00698 Acyl_transf_1: Acyl t 72.0 6.1 0.00013 43.4 5.4 45 242-287 69-115 (318)
59 TIGR00128 fabD malonyl CoA-acy 70.5 8.4 0.00018 41.1 5.9 47 241-287 66-114 (290)
60 cd03129 GAT1_Peptidase_E_like 68.5 11 0.00023 39.2 6.0 45 230-274 82-130 (210)
61 TIGR02069 cyanophycinase cyano 68.4 11 0.00023 40.9 6.1 45 229-273 83-131 (250)
62 cd03146 GAT1_Peptidase_E Type 60.0 9.4 0.0002 39.9 3.7 78 188-273 43-129 (212)
63 cd02252 nylC_like nylC-like fa 51.5 16 0.00035 40.1 3.9 31 229-259 58-89 (260)
64 COG3340 PepE Peptidase E [Amin 51.1 19 0.00042 38.6 4.3 74 188-272 46-132 (224)
65 TIGR02240 PHA_depoly_arom poly 47.3 20 0.00043 37.9 3.7 35 251-285 85-119 (276)
66 PF09752 DUF2048: Uncharacteri 46.6 24 0.00051 40.3 4.3 36 244-279 162-197 (348)
67 PF03576 Peptidase_S58: Peptid 46.3 20 0.00042 40.6 3.7 27 231-257 69-95 (326)
68 PRK11126 2-succinyl-6-hydroxy- 45.8 22 0.00049 36.1 3.8 35 247-281 56-90 (242)
69 PRK07581 hypothetical protein; 43.4 25 0.00054 38.4 3.9 36 251-286 116-153 (339)
70 PF14316 DUF4381: Domain of un 43.3 77 0.0017 31.4 6.9 8 55-62 9-16 (146)
71 TIGR03056 bchO_mg_che_rel puta 43.3 24 0.00052 36.2 3.5 31 250-280 88-118 (278)
72 PF12697 Abhydrolase_6: Alpha/ 42.3 28 0.00062 33.5 3.7 34 247-280 56-89 (228)
73 PRK10673 acyl-CoA esterase; Pr 42.1 28 0.00061 35.6 3.8 35 250-284 74-108 (255)
74 COG5093 Uncharacterized conser 41.2 2.5E+02 0.0055 29.0 10.0 130 54-204 42-179 (185)
75 TIGR03611 RutD pyrimidine util 41.1 31 0.00068 34.5 3.9 37 249-285 72-108 (257)
76 PLN02824 hydrolase, alpha/beta 41.0 28 0.0006 37.0 3.7 37 247-283 91-128 (294)
77 PF01764 Lipase_3: Lipase (cla 39.6 27 0.00058 32.9 3.0 20 258-277 64-84 (140)
78 PRK08775 homoserine O-acetyltr 39.2 28 0.0006 38.5 3.4 40 245-284 124-165 (343)
79 cd02253 DmpA L-Aminopeptidase 39.0 29 0.00062 39.6 3.5 31 230-260 82-112 (339)
80 TIGR01392 homoserO_Ac_trn homo 38.6 27 0.00059 38.6 3.3 36 249-284 118-154 (351)
81 TIGR02427 protocat_pcaD 3-oxoa 37.9 43 0.00092 33.0 4.2 38 249-286 71-108 (251)
82 PLN02847 triacylglycerol lipas 36.8 22 0.00048 43.2 2.3 17 260-276 254-270 (633)
83 TIGR03343 biphenyl_bphD 2-hydr 36.6 28 0.00061 36.3 2.8 40 245-284 88-128 (282)
84 PRK10637 cysG siroheme synthas 35.8 3.8E+02 0.0082 31.6 12.1 62 214-277 280-343 (457)
85 PLN02965 Probable pheophorbida 34.4 36 0.00078 35.5 3.2 35 248-282 62-97 (255)
86 PRK00870 haloalkane dehalogena 33.9 43 0.00092 35.9 3.8 34 249-282 107-140 (302)
87 PF11014 DUF2852: Protein of u 33.9 1E+02 0.0022 30.3 5.8 39 110-159 71-110 (115)
88 TIGR02816 pfaB_fam PfaB family 33.3 57 0.0012 39.4 5.0 33 244-276 251-284 (538)
89 TIGR01738 bioH putative pimelo 33.0 40 0.00087 33.1 3.2 38 248-285 56-93 (245)
90 TIGR03101 hydr2_PEP hydrolase, 32.4 46 0.001 36.4 3.7 35 247-281 89-123 (266)
91 PRK03592 haloalkane dehalogena 32.4 48 0.001 35.3 3.8 33 251-283 87-119 (295)
92 PF14276 DUF4363: Domain of un 31.9 2.1E+02 0.0046 27.2 7.7 55 105-159 35-97 (121)
93 TIGR02813 omega_3_PfaA polyket 30.5 78 0.0017 45.0 6.2 45 239-283 656-701 (2582)
94 TIGR01250 pro_imino_pep_2 prol 29.8 36 0.00079 34.5 2.3 33 251-283 90-122 (288)
95 PRK06489 hypothetical protein; 29.7 45 0.00098 37.1 3.2 34 253-286 149-183 (360)
96 PF07859 Abhydrolase_3: alpha/ 28.7 44 0.00096 33.5 2.7 23 255-277 67-91 (211)
97 PRK00175 metX homoserine O-ace 28.3 66 0.0014 36.3 4.2 36 249-284 138-174 (379)
98 TIGR03695 menH_SHCHC 2-succiny 27.8 45 0.00099 32.6 2.5 27 254-280 67-93 (251)
99 PLN02752 [acyl-carrier protein 27.3 1.1E+02 0.0023 34.3 5.6 47 241-287 102-155 (343)
100 PRK11071 esterase YqiA; Provis 26.2 77 0.0017 32.4 3.9 34 245-278 48-82 (190)
101 PRK10349 carboxylesterase BioH 25.1 66 0.0014 33.3 3.3 37 249-285 66-102 (256)
102 PF06305 DUF1049: Protein of u 25.1 2.2E+02 0.0047 24.2 5.9 10 67-76 18-27 (68)
103 TIGR01249 pro_imino_pep_1 prol 25.0 76 0.0017 34.3 3.8 42 245-286 82-124 (306)
104 PLN02578 hydrolase 24.0 75 0.0016 35.4 3.6 33 251-283 146-178 (354)
105 PLN02298 hydrolase, alpha/beta 23.4 82 0.0018 34.3 3.7 35 246-280 120-157 (330)
106 PF08822 DUF1804: Protein of u 23.4 1.8E+02 0.0039 30.2 5.8 43 185-229 68-110 (165)
107 COG2267 PldB Lysophospholipase 22.6 66 0.0014 35.6 2.8 40 243-282 88-132 (298)
108 PF03959 FSH1: Serine hydrolas 22.6 71 0.0015 33.2 2.9 31 246-277 92-122 (212)
109 PRK06765 homoserine O-acetyltr 22.6 77 0.0017 36.5 3.4 37 249-285 152-189 (389)
110 PRK13604 luxD acyl transferase 22.4 1.1E+02 0.0023 34.6 4.4 33 244-276 95-127 (307)
111 PRK10749 lysophospholipase L2; 22.4 82 0.0018 34.6 3.5 27 255-281 129-155 (330)
112 KOG1454 Predicted hydrolase/ac 22.2 1E+02 0.0022 34.6 4.2 59 227-285 87-156 (326)
113 PRK10566 esterase; Provisional 21.8 88 0.0019 32.2 3.4 32 247-278 94-128 (249)
114 PLN02894 hydrolase, alpha/beta 21.5 97 0.0021 35.5 4.0 33 251-283 170-202 (402)
115 COG0331 FabD (acyl-carrier-pro 20.8 1.8E+02 0.0039 32.8 5.8 46 241-286 67-115 (310)
116 PLN02733 phosphatidylcholine-s 20.5 1.2E+02 0.0025 35.9 4.3 35 252-286 157-191 (440)
117 PF00561 Abhydrolase_1: alpha/ 20.3 90 0.0019 30.8 3.0 30 254-283 41-70 (230)
118 cd00741 Lipase Lipase. Lipase 20.3 69 0.0015 31.1 2.2 18 260-277 31-48 (153)
119 PLN02679 hydrolase, alpha/beta 20.3 1E+02 0.0022 34.5 3.8 27 251-277 149-175 (360)
120 PF05728 UPF0227: Uncharacteri 20.3 1.1E+02 0.0025 31.7 3.8 19 259-277 61-79 (187)
121 PF00756 Esterase: Putative es 20.2 61 0.0013 33.6 1.8 25 255-279 111-137 (251)
122 PRK03204 haloalkane dehalogena 20.0 95 0.0021 33.3 3.3 40 245-284 88-128 (286)
No 1
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=100.00 E-value=6.2e-117 Score=974.73 Aligned_cols=530 Identities=50% Similarity=0.780 Sum_probs=489.6
Q ss_pred ccceeccCCCChhhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhccCC-----CCCCC
Q 003105 57 TPLISWLHPRNPQGILAMVTIIAFLLKRCTNVKLRAEMAYRRKFWRNMMRTALTYEEWAHAAKMLDKETP-----KMNES 131 (847)
Q Consensus 57 ~~~~~~~~~r~p~~il~~~~~~~f~~~~~~~~~~r~~~~~r~~~l~~~L~~A~tYeEW~~aA~~LD~l~g-----~~~~S 131 (847)
.++..|.+||| +++++++++++|.+.++.....++.+.++++.+ |+.|.|||||+.+|..||+++| ++++|
T Consensus 3 ~~~~~~~i~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~a~syeeW~~~a~~lD~~tg~~~wr~~~es 78 (543)
T KOG2214|consen 3 SLFTSWHIPRN-QGILHVSTDIAFLWNRYLSNYVKQESIYRRKSQ---MKHALSYEEWCHAASRLDKITGKNEWRKNNES 78 (543)
T ss_pred eeccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHhhhhhhcccCccc
Confidence 46778999999 999999997776666666665888888888765 9999999999999999999997 78899
Q ss_pred CccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhccccccCCccccccc-cchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 003105 132 DLYDEELVRIKVQELHHRRQEGSLRDIIFCMRADLIRNLGNMCNPELHKGR-LQVPKLIKEYIDEVSTQLRMVCDSDSEE 210 (847)
Q Consensus 132 ~~YDy~lI~~rL~~Lr~aR~~~D~~~L~~~LR~~L~RNlGgi~n~~Ly~~~-~gTK~LIEeYI~EV~~~L~~l~~~~~~~ 210 (847)
++|||.+|.+++.+||+.|++++++.+++++|+.++||||||||++||++. .|||+|||||++||..||+++. +.+
T Consensus 79 ~lydy~lv~~~t~~lr~~r~~~~~~~~l~~~r~~~vRn~gNmgn~~Ly~~s~~GTK~lIdey~~e~~~~L~~l~---~~~ 155 (543)
T KOG2214|consen 79 DLYDYKLVKDLTSELRHRRQEKSYRDLLYLLRTSLVRNFGNMGNSNLYTHSHSGTKELIDEYLTEVLMVLDSLN---TSD 155 (543)
T ss_pred ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcCCCchhhhhhcccchHHHHHHHHHHHHHHHHHhh---hhc
Confidence 999999999999999999999999999999999999999999999999964 6999999999999999999986 367
Q ss_pred CcHHHHHHHHHHhhhccCceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhh
Q 003105 211 LSLEERLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSW 290 (847)
Q Consensus 211 ~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~ 290 (847)
++.++|+.||+++|++||||||+|||||+||+||+||+++|+|++|+|+||+|+|+|||||+++|+++++|++.+|++.+
T Consensus 156 ls~~~k~~ff~~~r~~~GrTAL~LsGG~tFGlfH~GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~ 235 (543)
T KOG2214|consen 156 LSLDEKLGFFQRTRHNFGRTALILSGGATFGLFHIGVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFL 235 (543)
T ss_pred cccHHHHHHHHHHHHhhCceEEEecCCchhhhhHHHHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccc--cccccccchhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCC
Q 003105 291 HSL--QFFDQLGGIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPH 368 (847)
Q Consensus 291 ~~l--~~fd~~~~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPn 368 (847)
... .+.+..++++..+++++..|+++|+..|.++++..+|++||+|||++|||++||+|++.+.+++|+++||+|+||
T Consensus 236 ~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~~~~~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPn 315 (543)
T KOG2214|consen 236 HSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMKKRLGNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPN 315 (543)
T ss_pred HhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHHhcchhHHHHHHhhCceEEEEECccccCCChhHhhccCCCc
Confidence 432 245667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEc
Q 003105 369 VVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQ 448 (847)
Q Consensus 369 VlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSq 448 (847)
|+||+||+||||+||+|++.+||+||..|+++||.+++ ...+|.||++.+++|+.+|+|+||||||||||
T Consensus 316 VLIWSAV~aScs~pgif~~~~Ll~Kd~t~ei~p~~~~~----------~~~r~~dgsl~~d~P~srL~ElFNVnhfIvsQ 385 (543)
T KOG2214|consen 316 VLIWSAVCASCSVPGIFESTPLLAKDLTNEIEPFIVTF----------SEPRFMDGSLDNDLPYSRLKELFNVNHFIVSQ 385 (543)
T ss_pred eehhHHHHHhcccccccCccHHHHhhccCcEeeccCCc----------cchhhccCcccccCcHHHHHHHhccccEEEec
Confidence 99999999999999999999999999999999998653 56799999999999999999999999999999
Q ss_pred cCCCcCcccc-cchhhhccchhhHHHHhhHhHHHHHHHHHHHHhhccCh--hhHHHHHccccCCcEEEEcCCChhhhhhh
Q 003105 449 ANPHISPLLR-LKEFVRAYGGNFAAKLAHLTEMEVKHRCNQILELGFPL--GGLAKLFAQDWEGDVTVVMPATVSQYLKI 525 (847)
Q Consensus 449 vnPhv~PFl~-~~~~~~~~~~~~~~~L~~l~~~Ei~hrl~ql~~lgl~~--~~l~~l~~Q~~~GDItIvP~~~~~Df~rI 525 (847)
+|||++||+. .++.++.+++.+..++.++..+|++|+++++.++|+++ ..+.+++.|+|+|||||+|+.++.||.++
T Consensus 386 ~nphl~P~~~~~~~~~~ar~~~~~~k~~~l~~~e~~~~~~~~~elg~~p~~~k~~sv~~q~~sg~iTivp~~s~~d~~~~ 465 (543)
T KOG2214|consen 386 ANPHLFPFLDYLKELVHARGSYYVKKIEQLVANEVKHVLDVLRELGFLPPGTKLSSVFDQEYSGDITIVPDLSFVDIKEI 465 (543)
T ss_pred CCcccccceeecHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccccccceeeeecccCceeeCCCcchHHHHHH
Confidence 9999999998 56666778888889999999999999999999999975 56888999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCcc
Q 003105 526 IQNPTHVELQKAANQGRRCTWEKLSAIKANCGIELALDECVAILNHMRRLKRSAERAAAASHGHFLPTKFSASRRIPSWN 605 (847)
Q Consensus 526 l~nPt~e~l~~~I~~GEraTwpkL~~Ir~r~~IE~aLd~~i~~l~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (847)
+.||+..++.+++..|+||||||++.|+++|+||++||+++..+.++++++.+.++..+.+. +..++.++|+
T Consensus 466 i~nPs~~~l~~~~~~G~raTw~K~~~i~~~c~iE~~l~~~~~~~~~~~~~~~s~~~~~~~~~--------~~t~~~ls~~ 537 (543)
T KOG2214|consen 466 ISNPTVIDLLYATTQGRRATWEKLSLIQNRCGIELALDAARTELKHRRILKSSLKTPLTFDA--------RSTTEILSWN 537 (543)
T ss_pred hCCCchHHHHHHHHhchhccchhhhHHHhhhHHHHHhhhhhheechhhHHhhhcccccchhh--------ccccccCChh
Confidence 99999999999999999999999999999999999999999999999888888876664322 4456669999
Q ss_pred cccccc
Q 003105 606 CIAREN 611 (847)
Q Consensus 606 ~~~~~~ 611 (847)
+.++.|
T Consensus 538 ~~~~~n 543 (543)
T KOG2214|consen 538 DTDIIN 543 (543)
T ss_pred hhcccC
Confidence 877643
No 2
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.1e-99 Score=845.82 Aligned_cols=402 Identities=42% Similarity=0.709 Sum_probs=367.4
Q ss_pred HHHHHHhhhhccccccCCcccccc-ccchhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcC
Q 003105 158 IIFCMRADLIRNLGNMCNPELHKG-RLQVPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGRTALLLSG 236 (847)
Q Consensus 158 L~~~LR~~L~RNlGgi~n~~Ly~~-~~gTK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSG 236 (847)
|+++||++|+||||||+|++||++ ++|||+||||||+||++||++|++.+...++.++|++||+++||+|||+||||+|
T Consensus 1 l~~~lr~~l~rn~g~i~~~~Ly~~~~~GTK~lIe~Yi~ev~~~l~~l~~~~~~~~~~~~kl~ff~~~~~~~GrtALvLsG 80 (421)
T cd07230 1 LLYLIRTTLSRDLGNMGNVNLYRHSHVGTKKLIERYITEALLTLEYLVDDDEDGLEDRYLLGMLLQTRKNFGRTALLLSG 80 (421)
T ss_pred ChhHHhhhhhcccccCCCHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhcCCEEEEEcC
Confidence 589999999999999999999996 5799999999999999999999987788899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhh-hccccccccc---cchhHHHHHhhcC
Q 003105 237 GASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDS-WHSLQFFDQL---GGIFSIVRRVMTQ 312 (847)
Q Consensus 237 GGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~-~~~l~~fd~~---~~l~~~l~r~l~~ 312 (847)
||+||+||+||+|||+|+||+|++|+|||+||+|||++|+++++|+.+++.+. ...+..|... ..++..+.+++++
T Consensus 81 GG~rG~~hiGVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 160 (421)
T cd07230 81 GGTFGMFHIGVLKALFEANLLPRIISGSSAGSIVAAILCTHTDEEIPELLEEFPYGDFNVFEDPDQEENVLQKLSRFLKY 160 (421)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHHHhcchHHHHHHhcccccchHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998872 2222233221 2455667888899
Q ss_pred CccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccceEEee
Q 003105 313 GAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMA 392 (847)
Q Consensus 313 G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV~L~~ 392 (847)
|+++|.+.+++++++.+|++||+|||++|||+++|+|++.+.++.|+++||+|+|||.||+||+||||+|++|+|+++++
T Consensus 161 g~~~d~~~l~~~l~~~lgd~tF~Eay~rt~r~L~I~vt~~~~~~~p~llny~t~p~v~I~~AV~AS~AlP~vf~pv~l~~ 240 (421)
T cd07230 161 GSWFDISHLTRVMRGFLGDLTFQEAYNRTRRILNITVSPASIYELPRLLNYITAPNVLIWSAVCASCSVPGVFPSSPLYE 240 (421)
T ss_pred CCCcCHHHHHHHHHHHhCCCCHHHHHHhhCCeEEEEEEeccccCCCeeeeeccCCCcHHHHHHHHhcCchhhcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCcccccchhh--------
Q 003105 393 KDR-SGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISPLLRLKEFV-------- 463 (847)
Q Consensus 393 Kd~-~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~PFl~~~~~~-------- 463 (847)
||+ +|+++||.| ++..|+|||+.+|+|++++.|+||||||||||||||++||+..++..
T Consensus 241 Kd~~~g~i~p~~~------------~g~~~vDGgv~~~iPi~~l~elfnvn~~Ivsqvnphv~pf~~~~~~~~~~~~~~~ 308 (421)
T cd07230 241 KDPKTGEIVPWNP------------SSVKWIDGSVDNDLPMTRLSEMFNVNHFIVSQVNPHVVPFLKKSESCVGGEVEDE 308 (421)
T ss_pred ecCCCCceecccC------------CCCceeCCCccccChHHHHHHhcCCCEEEEEccCccccceeecCcccCCCccccc
Confidence 995 899999974 46899999999999999999999999999999999999999743211
Q ss_pred -hccchhhHHHHhhHhHHHHHHHHHHHHhhccChh---hHHHHHccccCCcEEEEcCCChhhhhhhccCCCHHHHHHHHH
Q 003105 464 -RAYGGNFAAKLAHLTEMEVKHRCNQILELGFPLG---GLAKLFAQDWEGDVTVVMPATVSQYLKIIQNPTHVELQKAAN 539 (847)
Q Consensus 464 -~~~~~~~~~~L~~l~~~Ei~hrl~ql~~lgl~~~---~l~~l~~Q~~~GDItIvP~~~~~Df~rIl~nPt~e~l~~~I~ 539 (847)
...++.+..++.+++++|++||++++.++|+++. .+.+++.|+|+|||||+|++++.||.|+++|||++++.+||.
T Consensus 309 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~~~~~Q~~~gditi~P~~~~~~~~~~l~npt~~~~~~~~~ 388 (421)
T cd07230 309 LSARFKRWLNNVTDLAKDEVLHRLQLLSELGIFPNLLTKLRSVLSQKYSGDITILPELNYSDFPKILKNPTPEFMLDACL 388 (421)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccccCCcEEEccCcchHHHHHHhcCCCHHHHHHHHH
Confidence 0123456677888999999999999999998754 456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhH
Q 003105 540 QGRRCTWEKLSAIKANCGIELALDECVAILNH 571 (847)
Q Consensus 540 ~GEraTwpkL~~Ir~r~~IE~aLd~~i~~l~~ 571 (847)
+|||||||||++||++|+||++||+|++.||.
T Consensus 389 ~Ger~twP~l~~i~~~~~iE~~ld~~~~~l~~ 420 (421)
T cd07230 389 RGERATWPKLSRIRNHCAIELALDKAIQYLRA 420 (421)
T ss_pred hchhhhCccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999964
No 3
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.1e-99 Score=834.28 Aligned_cols=370 Identities=38% Similarity=0.605 Sum_probs=334.4
Q ss_pred CCHHHHHHHHHhhhhccccccCCcccccc-ccchhhHHHHHHHHHHHHHHHhhcCC-----CCcCcHHHHHHHHHHhhhc
Q 003105 153 GSLRDIIFCMRADLIRNLGNMCNPELHKG-RLQVPKLIKEYIDEVSTQLRMVCDSD-----SEELSLEERLAFMHETRHA 226 (847)
Q Consensus 153 ~D~~~L~~~LR~~L~RNlGgi~n~~Ly~~-~~gTK~LIEeYI~EV~~~L~~l~~~~-----~~~~~~~~Kl~Ff~~~r~s 226 (847)
||++.|+++||++|+||||||+|++||++ ++|||+||||||+||++||++|++.+ ...++.++|++||+++||+
T Consensus 1 ~D~~~l~~~Lr~~l~rNlggi~~~~Ly~~s~~GTK~lIe~Yi~ev~~~L~~l~~~~~~~~~~~~~~~~~kl~ff~~~r~~ 80 (391)
T cd07229 1 GDILTLLNLLRSGLVRNLGNITSPKLFTRAYAGTKLLIEEYITEVAECLEYVTALQTSPMHSKGFSSQAKLDFFHDTRQS 80 (391)
T ss_pred CCHHHHHHHHHHhhhccccccCCHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHh
Confidence 69999999999999999999999999996 57999999999999999999998543 4579999999999999999
Q ss_pred cCceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhcccccccc--------
Q 003105 227 FGRTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQ-------- 298 (847)
Q Consensus 227 ~GrtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~-------- 298 (847)
|||+||||||||++|++|+||+|||+|+||+|++|+|||+||||||++|+++++|+.+++.+...++..+..
T Consensus 81 fGrtAlvlsGGg~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~~d~~~~~~~~~~~~~~ 160 (391)
T cd07229 81 FGRTALVLQGGSIFGLCHLGVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDGIDLSAFNRLRGKKSLG 160 (391)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccchhhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999863222111111
Q ss_pred ------ccchhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHH
Q 003105 299 ------LGGIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIW 372 (847)
Q Consensus 299 ------~~~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIw 372 (847)
..+++..+.+++++|+++|.+.|++++++++||+||+|||++|||+|||+|++.+.+++|+|+||+|+|||+||
T Consensus 161 ~~~~~~~~~~~~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIw 240 (391)
T cd07229 161 YSGYGWLGTLGRRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIW 240 (391)
T ss_pred cccccccchHHHHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHH
Confidence 12456678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccc-ceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCC
Q 003105 373 SAVTASCAFPGLFE-AQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANP 451 (847)
Q Consensus 373 sAV~AS~AiPglF~-PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnP 451 (847)
+||+||||+|++|+ |++|||||++|+++||.|.... .....|.||++..|+|+++|+|||||||||||||||
T Consensus 241 sAv~aS~a~p~~~~~~~~L~~Kd~~G~ivp~~~~~~~-------~~~~~~~dgs~~~DlP~~rL~elFNVNhfIVSQ~nP 313 (391)
T cd07229 241 SAALASNASSAALYRSVTLLCKDETGSIVPWPPVQVL-------FFRSWRGANYSERESPLARLSELFNVNHFIVSQARP 313 (391)
T ss_pred HHHHHHcCCccccCCCceEEEECCCCCEeeCCCcccc-------cccccccCCCccccChHHHHHHHhCCCceEEEcccc
Confidence 99999999999988 9999999999999999864211 123346789999999999999999999999999999
Q ss_pred CcCcccccchhhhccchhhHHHHhhHhHHHHHHHHHHHHhhccChhhHHHHHccccCCcEEEEcCCChhhhhhhccCCCH
Q 003105 452 HISPLLRLKEFVRAYGGNFAAKLAHLTEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPATVSQYLKIIQNPTH 531 (847)
Q Consensus 452 hv~PFl~~~~~~~~~~~~~~~~L~~l~~~Ei~hrl~ql~~lgl~~~~l~~l~~Q~~~GDItIvP~~~~~Df~rIl~nPt~ 531 (847)
|++||+..+.. .|.+.|||||+|++++.||.|+|+||++
T Consensus 314 hv~Pfl~~~~~-----------------------------------------~~~~~gdItI~P~~~~~d~~~il~nPt~ 352 (391)
T cd07229 314 YLAPFLSSDLH-----------------------------------------ENIPGPNITLVPELSFSDFLRLFQNPTT 352 (391)
T ss_pred ceeeeeccccc-----------------------------------------ccCCCCceEECcCccHHHHHHHhcCCCH
Confidence 99999863210 1234599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 003105 532 VELQKAANQGRRCTWEKLSAIKANCGIELALDECVAILN 570 (847)
Q Consensus 532 e~l~~~I~~GEraTwpkL~~Ir~r~~IE~aLd~~i~~l~ 570 (847)
+++++||.+|||+|||||++||++|+||++||+|++.+|
T Consensus 353 ~~l~~~i~~Ger~tWP~l~~Ir~~c~IE~~Ld~~~~~l~ 391 (391)
T cd07229 353 DEIQYWILKGERGVWPALAALRVRCAVEFELDDGYQVLR 391 (391)
T ss_pred HHHHHHHHhchhhcCcchHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998873
No 4
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=100.00 E-value=5.6e-95 Score=807.17 Aligned_cols=388 Identities=34% Similarity=0.557 Sum_probs=352.8
Q ss_pred HHhhhhccccccCCcccccc-ccchhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchh
Q 003105 162 MRADLIRNLGNMCNPELHKG-RLQVPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASL 240 (847)
Q Consensus 162 LR~~L~RNlGgi~n~~Ly~~-~~gTK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGar 240 (847)
||++|+||||||+|++||++ ++|||+|||+||+||++||++|++. +.++.++|++||+++|++|||+||||+|||+|
T Consensus 1 ~r~~l~rn~g~i~~~~Ly~~~~~GTK~lIe~yi~ev~~~l~~l~~~--~~~~~~~k~~ff~~~~~~~grtALvLsGGG~r 78 (407)
T cd07232 1 LRGCVKNNFAGIENGRLYSETYYGTKNLVEEYIDEVEACLKYLRES--SQLDLEEKRRLFKRLSTNYGRTALCLSGGAAF 78 (407)
T ss_pred CchHHHhHHHhccChhhhhhcccCcHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhcCCEEEEECCcHHH
Confidence 58999999999999999985 5799999999999999999999854 57999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhcc-ccccccccchhHHHHHhhcCCccccHH
Q 003105 241 GAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHS-LQFFDQLGGIFSIVRRVMTQGAVHDIR 319 (847)
Q Consensus 241 GlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~-l~~fd~~~~l~~~l~r~l~~G~l~D~~ 319 (847)
|+||+||+|+|+|+|++|++|+||||||++||++|+++++|+.+++.+.... +... ...++.++.+++++|+++|.+
T Consensus 79 G~~h~GVlkaL~e~gllp~iI~GtSAGAivaalla~~t~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~G~~~d~~ 156 (407)
T cd07232 79 AYYHFGVVKALLDADLLPNVISGTSGGSLVAALLCTRTDEELKQLLVPELARKITAC--EPPWLVWIPRWLKTGARFDSV 156 (407)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHHhhhhhhhhhhc--cchHHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999999999999999999988763221 1111 134556778889999999999
Q ss_pred HHHHH-HHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccceEEeecCCCCC
Q 003105 320 QLQWM-LRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGE 398 (847)
Q Consensus 320 ~L~~~-Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ 398 (847)
.|+++ ++..+|++||+|||++|||+++|+|++.+++++|.++||+|+|||+||+||+||||+|++|+||++|+||++|+
T Consensus 157 ~l~~~~~~~~~gd~TFeEa~~~tgr~l~I~vt~~d~~~~~~lln~~tsp~v~I~sAV~AS~svPgvf~pv~l~~k~~~g~ 236 (407)
T cd07232 157 EWARTCCWFTRGSMTFEEAYERTGRILNISVVPADPHSPTILLNYLTSPNCTIWSAVLASAAVPGILNPVVLMMKDPDGT 236 (407)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCEEEEEEEECCCCCceEEeccCCCCccHHHHHHhcccCccccccCeEEEeecCCCC
Confidence 99999 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCcccccchhh----------h-cc
Q 003105 399 I-VPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISPLLRLKEFV----------R-AY 466 (847)
Q Consensus 399 i-vPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~PFl~~~~~~----------~-~~ 466 (847)
+ +||. ++.+|+|||+.+|+|++++.|+||||||||||||||++||+..+... + ..
T Consensus 237 ~~~~~~-------------~g~~~~DGgv~~diP~~~l~elfnvn~~Ivsq~nphv~Pf~~~~~~~~~~~~~~~~~~~~~ 303 (407)
T cd07232 237 LIPPFS-------------FGSKWKDGSLRTDIPLKALNTLFNVNFSIVSQVNPHINLFFFSSRGSVGRPVSHRKGRGWR 303 (407)
T ss_pred cccccC-------------CCCceecCCcCcccHHHHHHHHcCCCeeEEeccccccchhhcccccccCCccccccccccc
Confidence 8 8886 56899999999999999999999999999999999999999743111 0 12
Q ss_pred chhhHHHHhhHhHHHHHHHHHHHHhhccChhh----HHHHHccccCCcEEEEcCCChhhhhhhccCCCHHHHHHHHHHHH
Q 003105 467 GGNFAAKLAHLTEMEVKHRCNQILELGFPLGG----LAKLFAQDWEGDVTVVMPATVSQYLKIIQNPTHVELQKAANQGR 542 (847)
Q Consensus 467 ~~~~~~~L~~l~~~Ei~hrl~ql~~lgl~~~~----l~~l~~Q~~~GDItIvP~~~~~Df~rIl~nPt~e~l~~~I~~GE 542 (847)
++.+..++.++++.|++||+.++.++|+.+.. +.+++.|+|+|||||+|++++.||.|+|+|||++++.+||..||
T Consensus 304 ~~~~~~~~~~~~~~e~~~~~~~l~~l~~~p~~~~~~~~~~~~Q~~~g~iti~P~~~~~~~~~~l~npt~~~~~~~~~~Ge 383 (407)
T cd07232 304 GGFLLSALEQYLKLDIKKWLKVLRDLELLPRPLGQDWSQIFLQDFSGTITIWPRSTLSDFLRILSDPTPEDLERMIHEGQ 383 (407)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHhhhHHheeccccCceEEccCcchHHHHHHhcCCCHHHHHHHHHhhh
Confidence 34566788899999999999999999987643 44678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 003105 543 RCTWEKLSAIKANCGIELALDECV 566 (847)
Q Consensus 543 raTwpkL~~Ir~r~~IE~aLd~~i 566 (847)
|||||||++||++|+||++||+|+
T Consensus 384 r~twP~l~~I~~~~~ie~~l~~~~ 407 (407)
T cd07232 384 QAAFPKLHFIKNRMRIEKAIEDGR 407 (407)
T ss_pred hhcchhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999984
No 5
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=100.00 E-value=6.9e-95 Score=776.75 Aligned_cols=323 Identities=79% Similarity=1.257 Sum_probs=305.4
Q ss_pred HHhhhhccccccCCccccccccchhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchhH
Q 003105 162 MRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASLG 241 (847)
Q Consensus 162 LR~~L~RNlGgi~n~~Ly~~~~gTK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarG 241 (847)
||++|+||||||+|++||++++|||+|||+||+||++||++|++.+.+.++.++|++||+++||+|||+||||+|||++|
T Consensus 1 lr~~l~rn~g~i~~~~L~~~~~GTK~lIe~Yi~ev~~~L~~l~~~~~~~~~~~~kl~ff~~~r~~~G~~aLvlsGGg~~g 80 (323)
T cd07231 1 LRADLVRNLGNMCNPELHKGRLEVPRLIRDYIAEVKAQLRAVVESDEDELSLEEKLAFFQETRHAFGRTALLLSGGAALG 80 (323)
T ss_pred CcchhhccccccCCHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHhcCCEEEEEcCcHHHH
Confidence 68999999999999999999999999999999999999999988777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccchhHHHHHhhcCCccccHHHH
Q 003105 242 AFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGIFSIVRRVMTQGAVHDIRQL 321 (847)
Q Consensus 242 lyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l~~G~l~D~~~L 321 (847)
+||+||+|+|+|+|++|++|+|||+||++||++|+++++|+.+++
T Consensus 81 ~~h~GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t~~El~~~~----------------------------------- 125 (323)
T cd07231 81 TFHVGVVRTLVEHQLLPRVIAGSSVGSIVCAIIATRTDEELQSFF----------------------------------- 125 (323)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999998887654
Q ss_pred HHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccceEEeecCCCCCccc
Q 003105 322 QWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVP 401 (847)
Q Consensus 322 ~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivP 401 (847)
++++||+||+|||++|||+|||+|++...+++|+|+||+|+|||+||+||+||||+|++|+|++||+||++|+++|
T Consensus 126 ----~~~~gd~TF~Eay~~tgr~lnI~v~~~~~~~~~~lln~~T~Pnv~I~sAv~aS~a~P~if~~~~L~~Kd~~G~ivp 201 (323)
T cd07231 126 ----RALLGDLTFQEAYDRTGRILGITVCPPRKSEPPRLLNYLTSPHVVIWSAVAASCAFPGLFEAQELMAKDRFGEIVP 201 (323)
T ss_pred ----HHHcCcccHHHHHhccCCEEEEEEecccCCCCceeeccCCCCCcHHHHHHHHHcCChhhccceeEEEECCCCCEee
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCcccccchhhhccchhhHHHHhhHhHHH
Q 003105 402 YHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISPLLRLKEFVRAYGGNFAAKLAHLTEME 481 (847)
Q Consensus 402 y~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~PFl~~~~~~~~~~~~~~~~L~~l~~~E 481 (847)
|.|+... ..++.|+||++.+|+|+++|+|+||||||||||||||++||+..+
T Consensus 202 ~~~~~~~-------~~~~~~~DGs~~~dlP~~rL~elfnVN~fIVSQ~nPhv~Pfl~~~--------------------- 253 (323)
T cd07231 202 YHPPGKV-------SSPRRWRDGSLEQDLPMQQLRELFNVNHFIVSQANPHIVPLLRLK--------------------- 253 (323)
T ss_pred ccCCCcc-------ccccccccCcccccCchHHHHHhcCCCceEEEcCCceehHHhcch---------------------
Confidence 9864100 146899999999999999999999999999999999999987410
Q ss_pred HHHHHHHHHhhccChhhHHHHHccccCCcEEEEcCCChhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 003105 482 VKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPATVSQYLKIIQNPTHVELQKAANQGRRCTWEKLSAIKANCGIELA 561 (847)
Q Consensus 482 i~hrl~ql~~lgl~~~~l~~l~~Q~~~GDItIvP~~~~~Df~rIl~nPt~e~l~~~I~~GEraTwpkL~~Ir~r~~IE~a 561 (847)
.++.|+|+|||||+|++++.||.|+++||+++++.+||.+|||+|||||++||++|+||++
T Consensus 254 -------------------~~~~Q~~~GditI~P~~~~~~~~~il~nPt~~~l~~~i~~Ger~tWPkl~~Ir~~~~IE~~ 314 (323)
T cd07231 254 -------------------KLFAQEWEGDITIVMPITWKQLLKIIQNPTPEELRKAAMAGERCTWEKLSAIESNCGIELT 314 (323)
T ss_pred -------------------hheecccCCceEEccCccHHHHHHHhcCCCHHHHHHHHHhchhhcCccHHHHHHHHHHHHH
Confidence 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003105 562 LDECVAILN 570 (847)
Q Consensus 562 Ld~~i~~l~ 570 (847)
||+|++.||
T Consensus 315 Ld~~i~~l~ 323 (323)
T cd07231 315 LDECVAELR 323 (323)
T ss_pred HHHHHHhhC
Confidence 999999874
No 6
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=100.00 E-value=9.4e-85 Score=696.45 Aligned_cols=297 Identities=52% Similarity=0.859 Sum_probs=286.4
Q ss_pred HHhhhhccccccCCcccccc-ccchhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchh
Q 003105 162 MRADLIRNLGNMCNPELHKG-RLQVPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASL 240 (847)
Q Consensus 162 LR~~L~RNlGgi~n~~Ly~~-~~gTK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGar 240 (847)
||++|+||||||+|++||++ ++|||+|||+||+||+.||++|++.+.+.++.++|++||+++|++|||+||+|+|||+|
T Consensus 1 lr~~l~rn~g~i~~~~Ly~~~~~GTK~lIe~y~~ev~~~l~~~~~~~~~~~~~~~k~~ff~~~r~~~g~~aLvlsGGg~~ 80 (298)
T cd07206 1 LREGLHGNLGNMGNPSLYRHAYFGTKHLIEDYIEEVDLSLEYLALLDTKELSVEEKLDFFRRARHAFGRTALMLSGGASL 80 (298)
T ss_pred CcchhhccccccCCHHHHhhcccCcHHHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhcCCEEEEEcCcHHH
Confidence 68999999999999999996 57999999999999999999998777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccchhHHHHHhhcCCccccHHH
Q 003105 241 GAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGIFSIVRRVMTQGAVHDIRQ 320 (847)
Q Consensus 241 GlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l~~G~l~D~~~ 320 (847)
|+||+||+|+|+|+|++|++|+|||+||++|+++|+++++|+
T Consensus 81 g~~h~Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~~~El-------------------------------------- 122 (298)
T cd07206 81 GLFHLGVVKALWEQDLLPRVISGSSAGAIVAALLGTHTDEEL-------------------------------------- 122 (298)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEcHHHHHHHHHHcCCcHHH--------------------------------------
Confidence 999999999999999999999999999999999999986665
Q ss_pred HHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccceEEeecCCCCCcc
Q 003105 321 LQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIV 400 (847)
Q Consensus 321 L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~iv 400 (847)
+||+||+|||++|||+++|+|++.+.++.|.++||+|+|||+||+||+||||+|++|+|+++++||++|+++
T Consensus 123 --------~gdlTf~EA~~~tgr~lnI~vt~~~~~~~~~lln~~tspnv~i~sAv~AS~slP~~f~pv~l~~k~~~g~~~ 194 (298)
T cd07206 123 --------IGDLTFQEAYERTGRIINITVAPAEPHQNSRLLNALTSPNVLIWSAVLASCAVPGVFPPVMLMAKNRDGEIV 194 (298)
T ss_pred --------HcCCCHHHHHHhcCCEEEEEEEECCCCCceEEecccCCCchHHHHHHhhccCccccccCeEEEeecCCCccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCcccccchhhhccchhhHHHHhhHhHH
Q 003105 401 PYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISPLLRLKEFVRAYGGNFAAKLAHLTEM 480 (847)
Q Consensus 401 Py~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~PFl~~~~~~~~~~~~~~~~L~~l~~~ 480 (847)
||. +++.|+|||+.+|+|++++.|+||||||||||+|||++||+
T Consensus 195 p~~-------------~g~~~~DGgv~~~iPv~~l~~~~nvn~~Ivsq~np~~~pf~----------------------- 238 (298)
T cd07206 195 PYL-------------PGRKWVDGSVSDDLPAKRLARLYNVNHFIVSQTNPHVVPFL----------------------- 238 (298)
T ss_pred cCC-------------CCCcccCCCcCcchHHHHHHHHcCCCeEEEEcccCccccee-----------------------
Confidence 997 56899999999999999999999999999999999998864
Q ss_pred HHHHHHHHHHhhccChhhHHHHHccccCCcEEEEcCCChhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 003105 481 EVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPATVSQYLKIIQNPTHVELQKAANQGRRCTWEKLSAIKANCGIEL 560 (847)
Q Consensus 481 Ei~hrl~ql~~lgl~~~~l~~l~~Q~~~GDItIvP~~~~~Df~rIl~nPt~e~l~~~I~~GEraTwpkL~~Ir~r~~IE~ 560 (847)
|+|.|||||+|++++.||.++++||+++++++||..|||+|||+|++||++|+||+
T Consensus 239 ------------------------q~~~gditI~P~~~~~~~~~~l~~p~~~~~~~~~~~G~r~twp~l~~i~~~~~ie~ 294 (298)
T cd07206 239 ------------------------QEYSGDITIIPPFSFSNPLKLLSNPSEDELQRLILEGERATWPKIEMIRTQTRISR 294 (298)
T ss_pred ------------------------eeccCcEEEeeCccHHHHHHHhcCCCHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 003105 561 ALDE 564 (847)
Q Consensus 561 aLd~ 564 (847)
+||+
T Consensus 295 ~l~~ 298 (298)
T cd07206 295 TLEE 298 (298)
T ss_pred hhcC
Confidence 9984
No 7
>PRK10279 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=318.95 Aligned_cols=270 Identities=18% Similarity=0.267 Sum_probs=195.1
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccchhHHHH
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGIFSIVR 307 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~ 307 (847)
.+++|||+|||+||+||+|||++|+|+|+.||+|+|||+||++|++||++..+++++++... .+.+ ++..+.
T Consensus 4 ~~igLvL~GGGarG~ahiGVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~~~l~~~~~~~----~~~~----~~~~~d 75 (300)
T PRK10279 4 IKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALEDWVTSF----SYWD----VLRLMD 75 (300)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCChHHHHHHHhcc----chhh----hhhhhc
Confidence 57999999999999999999999999999999999999999999999999877887766541 1111 011111
Q ss_pred HhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccc
Q 003105 308 RVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEA 387 (847)
Q Consensus 308 r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~P 387 (847)
..+..+++++.+.+.+++++.+++.+|+++ ..++.|++|+..+++. .|++.++ +++||+||||+|++|+|
T Consensus 76 ~~~~~~gl~~~~~~~~~l~~~~~~~~~e~l----~~~~~ivAtdl~tg~~----v~~~~g~--l~~avrAS~aiP~vf~P 145 (300)
T PRK10279 76 LSWQRGGLLRGERVFNQYREIMPETEIENC----SRRFGAVATNLSTGRE----LWFTEGD--LHLAIRASCSMPGLMAP 145 (300)
T ss_pred cCCCcCcccCcHHHHHHHHHHcChhhHHhC----CCCEEEEEEECCCCCE----EEecCCC--HHHHHHHhcccccCCCC
Confidence 123456789999999999999998888874 5689999999998873 6888888 78999999999999999
Q ss_pred eEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCc--C-----cccccc
Q 003105 388 QELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHI--S-----PLLRLK 460 (847)
Q Consensus 388 V~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv--~-----PFl~~~ 460 (847)
|++ +++.|+|||+.+|+|++.+.++ |++++|+++++... . +.....
T Consensus 146 v~~--------------------------~g~~~vDGGv~~~~Pv~~a~~~-Gad~viaV~v~~~~~~~~~~~~~~~~~~ 198 (300)
T PRK10279 146 VAH--------------------------NGYWLVDGAVVNPVPVSLTRAL-GADIVIAVDLQHDAHLMQQDLLSFNVSE 198 (300)
T ss_pred EEE--------------------------CCEEEEECccCccccHHHHHHc-CCCEEEEEECCCcccccccccccccccc
Confidence 998 7899999999999999999998 99999999997521 0 000000
Q ss_pred h-----hhhccchhhHHHHhhH---------hHHHHHHHHHHHHhhccChhhHHHHHccccCCcEEEEcCC---Chhhhh
Q 003105 461 E-----FVRAYGGNFAAKLAHL---------TEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPA---TVSQYL 523 (847)
Q Consensus 461 ~-----~~~~~~~~~~~~L~~l---------~~~Ei~hrl~ql~~lgl~~~~l~~l~~Q~~~GDItIvP~~---~~~Df~ 523 (847)
. ....+...+...+.+. ..+|+..+..++++ ..+.+........||.|.|++ ++.||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~im~-----~~~~~~~~~~~~~DllI~P~~~~~~~~df- 272 (300)
T PRK10279 199 ENSENGDSLPWHARLKERLGSITTRRAVTAPTAMEIMTTSIQVLE-----NRLKRNRMAGDPPDILIQPVCPQISTLDF- 272 (300)
T ss_pred ccccccccchhhhhhhhhhhhhhcccccCCCCHHHHHHHHHHHHH-----HHHHHHHhcCCCCcEEEeccCCCCCcccc-
Confidence 0 0000100011100000 01233333222221 112222222356899999986 45555
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003105 524 KIIQNPTHVELQKAANQGRRCTWEKLSAIKANC 556 (847)
Q Consensus 524 rIl~nPt~e~l~~~I~~GEraTwpkL~~Ir~r~ 556 (847)
+..+++|+.|++++..+++.|+..+
T Consensus 273 --------~~~~e~i~~G~~aa~~~~~~i~~~~ 297 (300)
T PRK10279 273 --------HRAHAAIAAGQLAVEKKMDELLPLV 297 (300)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999887654
No 8
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=100.00 E-value=3.8e-35 Score=286.35 Aligned_cols=131 Identities=43% Similarity=0.655 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHhccCC-----CCCCCCccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 003105 94 MAYRRKFWRNMMRTALTYEEWAHAAKMLDKETP-----KMNESDLYDEELVRIKVQELHHRRQEGSLRDIIFCMRADLIR 168 (847)
Q Consensus 94 ~~~r~~~l~~~L~~A~tYeEW~~aA~~LD~l~g-----~~~~S~~YDy~lI~~rL~~Lr~aR~~~D~~~L~~~LR~~L~R 168 (847)
.+.+++.|+++|++|+||+||+++|.+||+++| ..++|++|||++|+.|+.+|+++|.+||+..||++||+||+|
T Consensus 9 ~~~~~~~l~~~l~~A~sYeEW~~~A~~LD~l~G~~~Wk~~~~s~~YD~~lI~~rl~~L~~aR~~~d~~~l~~~Lr~~l~R 88 (145)
T PF11815_consen 9 WRGRRRRLRRQLRNAESYEEWKEAAQELDELEGNDAWKEDDESDYYDYRLIRERLRELREARQSGDIEALMFLLRTGLHR 88 (145)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcchhhcCCCCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345777899999999999999999999999998 578899999999999999999999999999999999999999
Q ss_pred cccccCCcccccc-ccchhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhc
Q 003105 169 NLGNMCNPELHKG-RLQVPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHA 226 (847)
Q Consensus 169 NlGgi~n~~Ly~~-~~gTK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s 226 (847)
|||||+||+||++ ++|||.|||+||+||+.||++|++. +.++.++|++||++++++
T Consensus 89 Nlggi~n~~LY~~s~~GTK~lIe~Yi~ev~~~L~~l~~~--~~~~~~~kl~ff~~~~~n 145 (145)
T PF11815_consen 89 NLGGIGNPRLYSHSYSGTKRLIEEYIDEVVRCLEYLAES--PELSDEEKLSFFQETRHN 145 (145)
T ss_pred CccccCCHHHHHHccccchHHHHHHHHHHHHHHHHHHhC--cCCCHHHHHHHHHHHhcC
Confidence 9999999999996 5799999999999999999999975 789999999999999975
No 9
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=100.00 E-value=4.8e-32 Score=293.06 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=193.4
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHHH
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSIV 306 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~l 306 (847)
.+++|||+|||+||++|+|||++|+|+|+.||.|+||||||++|++||++ +.+++.+........+ ..++..+
T Consensus 14 ~~~gLvL~GGG~RG~ahiGvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~~~~~~~~~~~~~~~~------~~~~~~~ 87 (306)
T cd07225 14 NSIALVLGGGGARGCAHIGVIKALEEAGIPVDMVGGTSIGAFIGALYAEERNISRMKQRAREWAKDM------TSIWKKL 87 (306)
T ss_pred CCEEEEECChHHHHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHHHHHHHHh------HHHHHHH
Confidence 46999999999999999999999999999999999999999999999998 4556666554311110 0111111
Q ss_pred -HHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcc
Q 003105 307 -RRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLF 385 (847)
Q Consensus 307 -~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF 385 (847)
...+....+++.+.+.+.+++.+++.+|+|+ ..++.+++|+..+++. .|+++++ +++||+||||+|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~edl----~~p~~~vatdl~tg~~----~~~~~g~--l~~avrAS~siP~~f 157 (306)
T cd07225 88 LDLTYPITSMFSGAAFNRSIHSIFGDKQIEDL----WLPYFTITTDITASAM----RVHTDGS--LWRYVRASMSLSGYL 157 (306)
T ss_pred hcccccccccCChHHHHHHHHHHhCCCCHHHc----CCCeEEEeeecCCCCE----EEecCCC--HHHHHHHHhcCCeec
Confidence 1112345678999999999999999999986 4678899999988873 6788886 799999999999999
Q ss_pred cceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCc----ccccch
Q 003105 386 EAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISP----LLRLKE 461 (847)
Q Consensus 386 ~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~P----Fl~~~~ 461 (847)
+|+.. + .+++.|+|||+.+|+|+..+.++ |++.+||+.+++.-.. +. +.
T Consensus 158 ~Pv~~----------~--------------~~g~~~vDGGv~~n~Pv~~a~~~-g~~~ii~V~v~~~~~~~~~~~~--~~ 210 (306)
T cd07225 158 PPLCD----------P--------------KDGHLLMDGGYINNLPADVARSM-GAKTVIAIDVGSQDETDLTNYG--DA 210 (306)
T ss_pred cceEe----------C--------------CCCeEEEeccccCcchHHHHHHC-CcCEEEEEECCCCccccccccc--cc
Confidence 99964 0 16789999999999999999987 9999999988764211 11 10
Q ss_pred hhhccchhhHHH----------HhhHhHHHHHHHHHHHHhhccChhhHHHHHccccCCc-EEEEcCCChhhhhhhccCCC
Q 003105 462 FVRAYGGNFAAK----------LAHLTEMEVKHRCNQILELGFPLGGLAKLFAQDWEGD-VTVVMPATVSQYLKIIQNPT 530 (847)
Q Consensus 462 ~~~~~~~~~~~~----------L~~l~~~Ei~hrl~ql~~lgl~~~~l~~l~~Q~~~GD-ItIvP~~~~~Df~rIl~nPt 530 (847)
. ..+ .+... ...+ .|+..+...+... ..+.++ +..+. +.|.|++. +| .--+
T Consensus 211 ~-~~~--~l~~~~~~~~~~~~~~p~~--~~i~~~~~~~~~~----~~~~~l---~~~~~~~~i~P~v~--~~----~~~d 272 (306)
T cd07225 211 L-SGW--WLLWKRWNPLAEKVKVPNM--AEIQSRLAYVSCV----RQLEEV---KSSDYCEYLRPPID--KY----KTLD 272 (306)
T ss_pred c-cch--hhHHhhccccccccCCCCH--HHHHHHHHHHHHH----HHHHHH---hccCCeEEEecCcc--CC----CCCC
Confidence 0 001 11110 0111 1222221111100 001111 12232 46889853 33 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 003105 531 HVELQKAANQGRRCTWEKLSAIKANCGIELALD 563 (847)
Q Consensus 531 ~e~l~~~I~~GEraTwpkL~~Ir~r~~IE~aLd 563 (847)
++.++++++.|++++...++.|+..-..|..|.
T Consensus 273 ~~kl~~~~~~Gy~~a~~~l~~~~~~~~~~~~~~ 305 (306)
T cd07225 273 FGKFDEICEVGYQHGKTVFDGWKRSGVLEKMLQ 305 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcchhhcc
Confidence 678999999999999999999999888877664
No 10
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=287.19 Aligned_cols=186 Identities=27% Similarity=0.386 Sum_probs=147.9
Q ss_pred ccCceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChh-hhHHHHHh---hhccccccccccc
Q 003105 226 AFGRTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWP-ELQSFFED---SWHSLQFFDQLGG 301 (847)
Q Consensus 226 s~GrtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~e-EL~~~l~~---~~~~l~~fd~~~~ 301 (847)
+..+++|+|+|||++|+||+||+++|+|+|+.|++|+|||+||+||++||++.++ +++.+... .|.. .. .
T Consensus 8 ~~~~i~LvL~GGgArG~~hiGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~~~~~~~~~~l~~~~~~--~~----~ 81 (306)
T COG1752 8 AKLRIGLVLGGGGARGAAHIGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDEDELELAAQRLTARWDN--AR----D 81 (306)
T ss_pred cCceEEEEecCcHHHHHHHHHHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCChhHHHHHHHHHHhhhcc--cc----c
Confidence 4567999999999999999999999999999999999999999999999999554 65555443 1211 00 0
Q ss_pred hhHHHHHhhcC---CccccHHHHHHHHHHhcCCc--cHHHHHhccCCE-EEEEEeCCCCCCCCccceeccCCCccHHHHH
Q 003105 302 IFSIVRRVMTQ---GAVHDIRQLQWMLRHLTSNL--TFQEAYDMTGRI-LGITVCSPRKHEPPRCLNYLTSPHVVIWSAV 375 (847)
Q Consensus 302 l~~~l~r~l~~---G~l~D~~~L~~~Lr~~lGdl--TFeEAy~rTGRi-LnItVt~~~~~~~p~LLNYlTsPnVlIwsAV 375 (847)
+.......+.. .++++.+.+.+.++..+++. +|++ ++++ +.+++++..++.. .++..+. +|+||
T Consensus 82 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~v~atd~~~g~~----~~~~~g~--~~~av 151 (306)
T COG1752 82 LLRLLDLTLPGGRPLGLLRGEKLRNLLRELLGDLLFDFED----LPIPLLYVVATDLLTGRE----VVFSEGS--LAEAV 151 (306)
T ss_pred hhhccchhhhccCccceecHHHHHHHHHHHhcccccCHHH----cCCCcEEEEeeEcCCCCE----EEecCCc--HHHHH
Confidence 00000001233 37889999999999999999 6665 4667 8899988887752 3455555 89999
Q ss_pred hhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcC
Q 003105 376 TASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIS 454 (847)
Q Consensus 376 ~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~ 454 (847)
+||||+|++|+||++ +++.|+|||+.+|+|+..+.+++. +++|++|+|+.+.
T Consensus 152 ~AS~siP~vF~Pv~i--------------------------~~~~~vDGg~~~n~Pv~~~~~~~~-~~vi~v~v~~~~~ 203 (306)
T COG1752 152 RASCSIPGVFPPVEI--------------------------DGRLLVDGGVLNNVPVSLLRELGA-DIVIAVDVNPSVR 203 (306)
T ss_pred HHhcccCccCCCEEE--------------------------CCEEEEecCccCCccHHHHHHcCC-CeEEEEecccccc
Confidence 999999999999998 668999999999999999999955 9999999995443
No 11
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=99.98 E-value=1.5e-31 Score=265.88 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=143.1
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChh-hhHHHHHhhh-ccccccccccchhHHHH
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWP-ELQSFFEDSW-HSLQFFDQLGGIFSIVR 307 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~e-EL~~~l~~~~-~~l~~fd~~~~l~~~l~ 307 (847)
++|||+|||+||+||+||+++|+|+|+.||+|+|||+|||+|++++++..+ ++..+..-.+ ....+++
T Consensus 1 ~~LvL~GGG~rG~~~~Gvl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~~~~~~~~~~~~~~~~~~~~---------- 70 (175)
T cd07228 1 IGLALGSGGARGWAHIGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDALEEWVRSLSQRDVLRLLD---------- 70 (175)
T ss_pred CEEEecCcHHHHHHHHHHHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHhhcc----------
Confidence 589999999999999999999999999999999999999999999999654 4433321111 0011111
Q ss_pred HhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccc
Q 003105 308 RVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEA 387 (847)
Q Consensus 308 r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~P 387 (847)
..+.+++++|.+.+++.+++.+++.+|+++ .+.+.|++++..++++ .|++..+ +++||+||||+|++|+|
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~l~i~at~~~tg~~----~~f~~~~--l~~av~AS~a~P~~f~p 140 (175)
T cd07228 71 LSASRSGLLKGEKVLEYLREIMGGVTIEEL----PIPFAAVATDLQTGKE----VWFREGS--LIDAIRASISIPGIFAP 140 (175)
T ss_pred cCCCcccccCHHHHHHHHHHHcCCCCHHHC----CCCEEEEEEECCCCCE----EEECCCC--HHHHHHHHcccCccccC
Confidence 113456789999999999999999999875 5679999999988763 6777666 89999999999999999
Q ss_pred eEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEcc
Q 003105 388 QELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQA 449 (847)
Q Consensus 388 V~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqv 449 (847)
+++ +++.|+|||+.+|+|++.+.++ |++++||+.+
T Consensus 141 ~~~--------------------------~g~~~vDGG~~~~~P~~~a~~~-g~~~iv~v~~ 175 (175)
T cd07228 141 VEH--------------------------NGRLLVDGGVVNPIPVSVARAL-GADIVIAVDL 175 (175)
T ss_pred EEE--------------------------CCEEEEeccCcCCCcHHHHHHC-CCCEEEEEeC
Confidence 998 6789999999999999999987 9999999864
No 12
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=99.98 E-value=1.8e-31 Score=264.17 Aligned_cols=174 Identities=22% Similarity=0.265 Sum_probs=147.0
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHHHHH
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSIVRR 308 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r 308 (847)
+||||+|||+||+||+||+++|+|+|+.||+|+|||+||++|++++++ +.+|+.+++...+..+... ...
T Consensus 1 ~~Lvl~GGG~rG~~~~Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~~~~~~~~~~~~~~~~~~~~---------~~~ 71 (175)
T cd07205 1 IGLALSGGGARGLAHIGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGYSPEEIEERAKLRSTDLKAL---------SDL 71 (175)
T ss_pred CeEEEeChhHHHHHHHHHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCCCHHHHHHHHHhhccchhhh---------hcc
Confidence 589999999999999999999999999999999999999999999998 5578887776433211111 111
Q ss_pred hhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccce
Q 003105 309 VMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQ 388 (847)
Q Consensus 309 ~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV 388 (847)
.+.++++++.+.+++++++.+++.+|+++ .+.+.|++++..++++ .+++..+ +|+|++||||+|++|+|+
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~l~i~a~~l~~g~~----~~f~~~~--l~~av~AS~a~P~~f~pv 141 (175)
T cd07205 72 TIPTAGLLRGDKFLELLDEYFGDRDIEDL----WIPFFIVATDLTSGKL----VVFRSGS--LVRAVRASMSIPGIFPPV 141 (175)
T ss_pred ccccccccChHHHHHHHHHHcCCCcHHHC----CCCEEEEEEECCCCCE----EEEcCCC--HHHHHHHHcccccccCCE
Confidence 23456789999999999999999999885 4678999999988763 5666655 899999999999999999
Q ss_pred EEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEcc
Q 003105 389 ELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQA 449 (847)
Q Consensus 389 ~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqv 449 (847)
++ +++.|+|||+.+|+|+..+.+. |++++||+.+
T Consensus 142 ~~--------------------------~g~~~~DGG~~~n~P~~~a~~~-g~~~iivv~~ 175 (175)
T cd07205 142 KI--------------------------DGQLLVDGGVLNNLPVDVLREL-GADIIIAVDL 175 (175)
T ss_pred EE--------------------------CCEEEEeccCcCCccHHHHHHC-CcCEEEEEEC
Confidence 98 6789999999999999999887 9999999864
No 13
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=99.97 E-value=1e-31 Score=268.56 Aligned_cols=176 Identities=22% Similarity=0.332 Sum_probs=145.1
Q ss_pred EEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHHHHHhh
Q 003105 232 LLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSIVRRVM 310 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l 310 (847)
|||+|||+||+||+||+++|+|+|+.||+|+|||+||++|+++|++ +.+|+.+++..... ..+.+.....+..+.+++
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEEAGILKKRVAGTSAGAITAALLALGYSAADIKDILKETDF-AKLLDSPVGLLFLLPSLF 80 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHHcCCCcceEEEECHHHHHHHHHHcCCCHHHHHHHHHhCCH-HHHhccchhhhHHHHHHH
Confidence 8999999999999999999999999999999999999999999998 56788888765211 111111111222345667
Q ss_pred cCCccccHHHHHHHHHHhcCCccH--------HHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCC
Q 003105 311 TQGAVHDIRQLQWMLRHLTSNLTF--------QEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFP 382 (847)
Q Consensus 311 ~~G~l~D~~~L~~~Lr~~lGdlTF--------eEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiP 382 (847)
..+++++.+.|++.+++.+++.+| .++|..+++.+.|++++..++++ .+++..+.|++.+|+||+||||+|
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~I~atd~~tg~~-~~f~~~~~~~~~l~~av~AS~AiP 159 (194)
T cd07207 81 KEGGLYKGDALEEWLRELLKEKTGNSFATSLLRDLDDDLGKDLKVVATDLTTGAL-VVFSAETTPDMPVAKAVRASMSIP 159 (194)
T ss_pred hhcCCccHHHHHHHHHHHHHhccCCcccchhhhhhccccCCcEEEEEEECCCCCE-EEecCCCCCcccHHHHHHHHcCCC
Confidence 778899999999999988876544 78888999999999999988764 455666778888999999999999
Q ss_pred CcccceEEeecCCCCCcccCCCCCCCCCCCCCCCC-CceeeecccccCchHHHH
Q 003105 383 GLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTA-VRRWRDGSLEIDLPMMQL 435 (847)
Q Consensus 383 glF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~-g~~yvDGGv~~NlPv~rL 435 (847)
++|+|+++ + ++.|+|||+.+|+|+.-+
T Consensus 160 ~~f~pv~i--------------------------~~g~~~vDGG~~~n~Pv~~~ 187 (194)
T cd07207 160 FVFKPVRL--------------------------AKGDVYVDGGVLDNYPVWLF 187 (194)
T ss_pred cccccEEe--------------------------CCCeEEEeCccccCCCchhc
Confidence 99999998 4 789999999999999743
No 14
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.97 E-value=9.8e-31 Score=275.40 Aligned_cols=181 Identities=21% Similarity=0.337 Sum_probs=147.2
Q ss_pred EEEcCCchhHHHHHHHHHHHHhCCCC-CceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccchhHHHHHhh
Q 003105 232 LLLSGGASLGAFHVGVVKTLVENKLM-PRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGIFSIVRRVM 310 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~gLl-PdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l 310 (847)
|||+|||+||+||+|||++|+|+|+. ||+|+|||+|||+|++++++..++..+++........++ .+.+++
T Consensus 1 Lvl~GGG~rG~~~~Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~ 72 (266)
T cd07208 1 LVLEGGGMRGAYTAGVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRGRALRINTKYATDPRYL--------GLRSLL 72 (266)
T ss_pred CeeccchhhHHHHHHHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcchHHHHHHHhcCCCCcc--------CHHHHh
Confidence 79999999999999999999999999 999999999999999999997654444443321111121 134567
Q ss_pred cCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCC--ccHHHHHhhhcCCCCcccce
Q 003105 311 TQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPH--VVIWSAVTASCAFPGLFEAQ 388 (847)
Q Consensus 311 ~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPn--VlIwsAV~AS~AiPglF~PV 388 (847)
+.+.+++.+.+.+.+......++| +++..+++.+.|++++..++++ .|++.++ ..+++||+||||+|++|+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~at~~~~g~~----~~~~~~~~~~~l~~av~AS~aiP~~f~pv 147 (266)
T cd07208 73 RTGNLFDLDFLYDELPDGLDPFDF-EAFAASPARFYVVATDADTGEA----VYFDKPDILDDLLDALRASSALPGLFPPV 147 (266)
T ss_pred cCCCeecHHHHHhhccCccCCcCH-HHHHhCCCcEEEEEEECCCCCE----EEEeCcCcchHHHHHHHHHhcchhhcCCE
Confidence 788889988887776543344555 3466678899999999998874 5676665 56899999999999999999
Q ss_pred EEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCC
Q 003105 389 ELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPH 452 (847)
Q Consensus 389 ~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPh 452 (847)
++ +++.|+|||+.+|+|+..+.++ |++++||++++|+
T Consensus 148 ~i--------------------------~g~~yvDGGv~~~~P~~~a~~~-g~~~iivv~t~~~ 184 (266)
T cd07208 148 RI--------------------------DGEPYVDGGLSDSIPVDKAIED-GADKIVVILTRPR 184 (266)
T ss_pred EE--------------------------CCEEEEcCccCcchhHHHHHHc-CCCeEEEEecCCC
Confidence 98 6789999999999999999987 9999999999985
No 15
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.97 E-value=1.4e-30 Score=269.50 Aligned_cols=177 Identities=25% Similarity=0.343 Sum_probs=150.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHHHHH
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSIVRR 308 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r 308 (847)
+||||+|||+||+||+||+|+|+|+|+.|+.|+|||+|||+|+++|++ +.+|+.+.+..... ..++ .+..
T Consensus 1 ~~LvL~GGG~rG~~~~GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~~~~~~~~~~~~~~-~~~~--------~~~~ 71 (221)
T cd07210 1 FALVLSSGFFGFYAHLGFLAALLEMGLEPSAISGTSAGALVGGLFASGISPDEMAELLLSLER-KDFW--------MFWD 71 (221)
T ss_pred CeEEEcChHHHHHHHHHHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCCHHHHHHHHHhcCH-HHHh--------hhcc
Confidence 589999999999999999999999999999999999999999999998 56788777654210 0111 0122
Q ss_pred hhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccce
Q 003105 309 VMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQ 388 (847)
Q Consensus 309 ~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV 388 (847)
....+++++.+.+++++++.+++.+|+++ .+++.|++++..+++. .|++.++ +++||+||||+|++|+|+
T Consensus 72 ~~~~~g~~~~~~l~~~l~~~l~~~~~~~~----~~~l~i~atdl~tg~~----~~f~~~~--l~~av~AS~aiP~~f~Pv 141 (221)
T cd07210 72 PPLRGGLLSGDRFAALLREHLPPDRFEEL----RIPLAVSVVDLTSRET----LLLSEGD--LAEAVAASCAVPPLFQPV 141 (221)
T ss_pred ccCCccccChHHHHHHHHHHcCCCCHHHC----CCCeEEEEEECCCCCE----EEECCCC--HHHHHHHHcccccccCCE
Confidence 34567789999999999999999999875 5789999999988763 6788887 799999999999999999
Q ss_pred EEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCc
Q 003105 389 ELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHI 453 (847)
Q Consensus 389 ~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv 453 (847)
++ +++.|+|||+.+|+|++.+. .+++++|++.+||..
T Consensus 142 ~i--------------------------~g~~~vDGGv~~n~Pi~~~~--~~~~~ii~v~~~~~~ 178 (221)
T cd07210 142 EI--------------------------GGRPFVDGGVADRLPFDALR--PEIERILYHHVAPRR 178 (221)
T ss_pred EE--------------------------CCEEEEeccccccccHHHHh--cCCCEEEEEECCCCC
Confidence 98 67899999999999999988 489999999999854
No 16
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=99.97 E-value=5.3e-30 Score=272.78 Aligned_cols=180 Identities=15% Similarity=0.213 Sum_probs=142.6
Q ss_pred ceEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHHHH
Q 003105 229 RTALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSIVR 307 (847)
Q Consensus 229 rtALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~l~ 307 (847)
++||||+|||+||+||+|||++|+|+|+.||+|+||||||++|++||++ +..|+....... +....++++.+.
T Consensus 10 ~igLVL~GGGaRG~ahiGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~~~~~~~~r~~~~------~~~~~~~~~~l~ 83 (269)
T cd07227 10 AIGLVLGGGGARGISHIGILQALEEAGIPIDAIGGTSIGSFVGGLYAREADLVPIFGRAKKF------AGRMASMWRFLS 83 (269)
T ss_pred CEEEEECCcHHHHHHHHHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCCchHHHHHHHHHH------HHHHhHHHHHHh
Confidence 5999999999999999999999999999999999999999999999998 444554432221 000001111110
Q ss_pred -HhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCccc
Q 003105 308 -RVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFE 386 (847)
Q Consensus 308 -r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~ 386 (847)
..+....++....+.+.+.+.+++.+|+|. ..++.+++|+..++++ .|++.++ +|+||+||||+|++|+
T Consensus 84 d~~~p~~~~~~g~~~~~~l~~~~~~~~iedl----~~pf~~~aTdl~tg~~----~~~~~g~--l~~avrAS~slPg~~p 153 (269)
T cd07227 84 DVTYPFASYTTGHEFNRGIWKTFGNTHIEDF----WIPFYANSTNITHSRM----EIHSSGY--AWRYIRASMSLAGLLP 153 (269)
T ss_pred hcccccccccchhHHHHHHHHHcCcCCHHHC----CCCEEEEEEECCCCCE----EEecCCC--HHHHHHHHccchhcCC
Confidence 011222334445566778888999999986 4678899999988873 6788887 7999999999999999
Q ss_pred ceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCC
Q 003105 387 AQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANP 451 (847)
Q Consensus 387 PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnP 451 (847)
|+++ +++.|+|||+.+|+|++.+.++ |++++||+.+.+
T Consensus 154 Pv~~--------------------------~G~~~vDGGv~dnlPv~~~~~~-G~~~ii~V~v~~ 191 (269)
T cd07227 154 PLSD--------------------------NGSMLLDGGYMDNLPVSPMRSL-GIRDIFAVDVGS 191 (269)
T ss_pred CEEE--------------------------CCEEEEcccCCccHhHHHHHHc-CCCEEEEEECCC
Confidence 9998 7899999999999999999998 999999999874
No 17
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.95 E-value=2.4e-27 Score=243.79 Aligned_cols=165 Identities=27% Similarity=0.365 Sum_probs=131.7
Q ss_pred EEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCCh---hhhHHHHHhhhccccccccccchhHHHHH
Q 003105 232 LLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSW---PELQSFFEDSWHSLQFFDQLGGIFSIVRR 308 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~---eEL~~~l~~~~~~l~~fd~~~~l~~~l~r 308 (847)
|||+|||++|+||+||+++|+|+|+.||+|+|||+||++|+++|++.. +++.+++.+ +... .
T Consensus 1 LvL~GGG~rG~~~~Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~~~~~~l~~~~~~----~~~~----~------- 65 (215)
T cd07209 1 LVLSGGGALGAYQAGVLKALAEAGIEPDIISGTSIGAINGALIAGGDPEAVERLEKLWRE----LSRE----D------- 65 (215)
T ss_pred CEecccHHHHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCcHHHHHHHHHHHh----CChh----h-------
Confidence 799999999999999999999999999999999999999999999974 555555443 1110 0
Q ss_pred hhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCC-ccHHHHHhhhcCCCCcccc
Q 003105 309 VMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPH-VVIWSAVTASCAFPGLFEA 387 (847)
Q Consensus 309 ~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPn-VlIwsAV~AS~AiPglF~P 387 (847)
++ ++.++.+.+...+|++.-.. .+.+.|++++..++++ .|++..+ ..+++||+||||+|++|+|
T Consensus 66 ~~----------l~~~~~~~~~~~~~~~~~~~-~~~l~i~at~~~tg~~----~~f~~~~~~~~~~av~AS~aiP~~f~p 130 (215)
T cd07209 66 VF----------LRGLLDRALDFDTLRLLAIL-FAGLVIVAVNVLTGEP----VYFDDIPDGILPEHLLASAALPPFFPP 130 (215)
T ss_pred HH----------HHHHHHHhCCHHHHhhcccc-CceEEEEEEEcCCCCE----EEEeCCCcchHHHHHHHhccccccCCC
Confidence 00 55666666655566554211 1468899999988774 5555443 4579999999999999999
Q ss_pred eEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCc
Q 003105 388 QELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHI 453 (847)
Q Consensus 388 V~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv 453 (847)
+++ +++.|+|||+.+|+|+..+.++ |++++||+.++|..
T Consensus 131 v~i--------------------------~g~~yvDGGv~~n~Pv~~a~~~-g~~~iivv~~~~~~ 169 (215)
T cd07209 131 VEI--------------------------DGRYYWDGGVVDNTPLSPAIDL-GADEIIVVSLSDKG 169 (215)
T ss_pred EEE--------------------------CCeEEEcCccccCcCHHHHHhc-CCCEEEEEECCCcc
Confidence 998 6789999999999999999987 99999999998753
No 18
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=99.94 E-value=2.2e-27 Score=235.20 Aligned_cols=170 Identities=29% Similarity=0.383 Sum_probs=123.1
Q ss_pred EEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccccccccccchhHHHHHhh
Q 003105 232 LLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSLQFFDQLGGIFSIVRRVM 310 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l 310 (847)
|+|+|||+||+||+||+++|+|+|+.||+|+|||+|||+|++++++.. +++..+..+.+...+.. ....+.
T Consensus 1 Lvl~GGG~rG~~~~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 72 (172)
T cd07198 1 LVLSGGGALGIYHVGVAKALRERGPLIDIIAGTSAGAIVAALLASGRDLEEALLLLLRLSREVRLR--------FDGAFP 72 (172)
T ss_pred CEECCcHHHHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--------ccCCcC
Confidence 799999999999999999999999999999999999999999999954 45555543322211110 001122
Q ss_pred cCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceec-cCCCccHHHHHhhhcCCCCcccceE
Q 003105 311 TQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYL-TSPHVVIWSAVTASCAFPGLFEAQE 389 (847)
Q Consensus 311 ~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYl-TsPnVlIwsAV~AS~AiPglF~PV~ 389 (847)
+.|.+.+ ..++..++. .+.+++.....++.|++++..+++.. ++ ..++..+++||+||||+|++|+|++
T Consensus 73 ~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~i~at~l~tg~~~----~~~~~~~~~l~~av~AS~aiP~~f~p~~ 142 (172)
T cd07198 73 PTGRLLG-ILRQPLLSA-----LPDDAHEDASGKLFISLTRLTDGENV----LVSDTSKGELWSAVRASSSIPGYFGPVP 142 (172)
T ss_pred cccchhH-HHHHHHHHh-----ccHhHHHHCCCCEEEEEEECCCCCEE----EEeCCCcchHHHHHHHHcchhhhcCcee
Confidence 3344333 222233322 23556666678899999999887642 22 1333458999999999999999998
Q ss_pred EeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCE
Q 003105 390 LMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNH 443 (847)
Q Consensus 390 L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~ 443 (847)
++ .+++.|+|||+.+|+|+.++.++++|++
T Consensus 143 ~~------------------------~~g~~~vDGGv~~n~Pv~~~~~~~~v~~ 172 (172)
T cd07198 143 LS------------------------FRGRRYGDGGLSNNLPVAELGNTINVSP 172 (172)
T ss_pred ec------------------------CCCeEEEeCCcccCCCCccccceEEeCc
Confidence 71 2678999999999999999888876653
No 19
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=99.92 E-value=8.2e-25 Score=229.62 Aligned_cols=162 Identities=23% Similarity=0.293 Sum_probs=116.4
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCCC--C--ceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccccccccccchhHH
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKLM--P--RIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSLQFFDQLGGIFSI 305 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gLl--P--dIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l~~fd~~~~l~~~ 305 (847)
.|+|+|||++|+||+||+++|+|+|+. + +.|+||||||++|++|+++.. +|+.+++.+.....+...
T Consensus 1 ~LslsGGG~~G~yh~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~~~~~~~~~~~~~~~~~~~~-------- 72 (243)
T cd07204 1 NLSFSGCGFLGIYHVGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVSMEEACSFILKVVSEARRRS-------- 72 (243)
T ss_pred CeeEcchHHHHHHHHHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhhh--------
Confidence 389999999999999999999999975 4 599999999999999999954 676555543221111110
Q ss_pred HHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCc-
Q 003105 306 VRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGL- 384 (847)
Q Consensus 306 l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPgl- 384 (847)
+..+.+...+. +.+++.+.+.+++..++ .....+.|++|+..+++ +.+++.+++++. +.+||+|||++|++
T Consensus 73 ~g~~~~~~~~~--~~l~~~l~~~lp~~~~~----~~~~~l~I~~T~l~~g~-~~~~~~f~s~~~-Li~Al~AS~~iP~~~ 144 (243)
T cd07204 73 LGPLHPSFNLL--KILRQGLEKILPDDAHE----LASGRLHISLTRVSDGE-NVLVSEFDSKEE-LIQALVCSCFIPFYC 144 (243)
T ss_pred cCcccccchHH--HHHHHHHHHHCChhHHH----hcCCCEEEEEEECCCCC-EEEEecCCCchH-HHHHHHHhccCCccc
Confidence 00111111111 34666777777765444 34567899999998885 344444445443 67999999999999
Q ss_pred -ccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHH
Q 003105 385 -FEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQ 434 (847)
Q Consensus 385 -F~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~r 434 (847)
|.|+++ +|+.|+|||+.+|+|+..
T Consensus 145 g~~P~~~--------------------------~G~~~vDGGv~~~lP~~~ 169 (243)
T cd07204 145 GLIPPKF--------------------------RGVRYIDGGLSDNLPILD 169 (243)
T ss_pred CCCCeEE--------------------------CCEEEEeCCcccCCCCCC
Confidence 478877 789999999999999864
No 20
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=99.91 E-value=6.7e-24 Score=223.34 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=122.7
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCC--CCCceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccccccccccchhHHHH
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENK--LMPRIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSLQFFDQLGGIFSIVR 307 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~g--LlPdIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l~~fd~~~~l~~~l~ 307 (847)
.|+|+|||+||+||+||+++|+|+| +.++.|+||||||++|++++++.+ +|+.+.+.+........ . +.
T Consensus 2 ~LsfsGGG~rG~yh~GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~~~~~~~~~~~~~~~~~~~----~----lg 73 (245)
T cd07218 2 NLSFAGCGFLGIYHVGVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLPLGEMTSDFLRVVREARRH----S----LG 73 (245)
T ss_pred cEEEeCcHHHHHHHHHHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh----c----cc
Confidence 6999999999999999999999999 679999999999999999999954 67665544321111100 0 00
Q ss_pred HhhcCCcccc-HHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcc-
Q 003105 308 RVMTQGAVHD-IRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLF- 385 (847)
Q Consensus 308 r~l~~G~l~D-~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF- 385 (847)
.+ . ..++ ...+++.+++.+++..++++ ...|.|++|+..+++...+..+-+..+ +++|++|||++|+++
T Consensus 74 ~~-~--p~~~l~~~l~~~l~~~lp~d~~~~~----~~~L~i~~T~l~~g~~~~~s~f~s~~d--Li~al~AS~~IP~~~g 144 (245)
T cd07218 74 PF-S--PSFNIQTCLLEGLQKFLPDDAHERV----SGRLHISLTRVSDGKNVIVSEFESREE--LLQALLCSCFIPVFSG 144 (245)
T ss_pred CC-c--cccCHHHHHHHHHHHHCCcchHHhC----CCCEEEEEEECCCCCeEEEecCCCcch--HHHHHHHhcCCCcccC
Confidence 01 1 1123 35677888888887766554 345899999998876422222222344 789999999999994
Q ss_pred -cceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEc
Q 003105 386 -EAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQ 448 (847)
Q Consensus 386 -~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSq 448 (847)
.|+.+ .|+.|+|||+.+|+|+ ++.+.++||.
T Consensus 145 ~~P~~~--------------------------~G~~~vDGGv~dnlP~------~~~~ti~vsp 176 (245)
T cd07218 145 LLPPKF--------------------------RGVRYMDGGFSDNLPT------LDENTITVSP 176 (245)
T ss_pred CCCeEE--------------------------CCEEEEcCcccCCCCC------CCCceEEEeC
Confidence 56555 6789999999999998 4678888873
No 21
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.91 E-value=8e-24 Score=223.64 Aligned_cols=168 Identities=18% Similarity=0.301 Sum_probs=120.9
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCCC----CceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccccccccccchhHH
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKLM----PRIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSLQFFDQLGGIFSI 305 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gLl----PdIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l~~fd~~~~l~~~ 305 (847)
.|+|+|||++|+||+||+++|+|+++. ++.|+||||||++|++|+++.+ +++.+.+.+........ .. +
T Consensus 2 ~Lsl~GGG~rG~yh~GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~~~~~~~~~~~~~~~~~~~-~~-g---- 75 (252)
T cd07221 2 SLSFAGCGFLGFYHVGVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLPLDQILQILMDLVRSARSR-NI-G---- 75 (252)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccc-cc-c----
Confidence 699999999999999999999999875 8999999999999999999965 67777665421100000 00 1
Q ss_pred HHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCc-
Q 003105 306 VRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGL- 384 (847)
Q Consensus 306 l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPgl- 384 (847)
.+ +.++.-...+++.+++.+++. +.+. ...++.|++|+..+++...+-++-+..+ +++||+|||++|++
T Consensus 76 ---~~-~~~~~~~~~l~~~l~~~lp~~-~~~~---~~~~l~I~~T~l~tg~~v~~~~f~s~~~--l~~av~AS~siP~~~ 145 (252)
T cd07221 76 ---IL-HPSFNLSKHLRDGLQRHLPDN-VHQL---ISGKMCISLTRVSDGENVLVSDFHSKDE--VVDALVCSCFIPFFS 145 (252)
T ss_pred ---cc-CcccCHHHHHHHHHHHHCCcC-HHHh---cCCCEEEEEEECCCCCEEEEecCCCchH--HHHHHHHHccCcccc
Confidence 11 122233366888888888764 3332 2345899999998876422223334555 68999999999999
Q ss_pred -ccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEE
Q 003105 385 -FEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIV 446 (847)
Q Consensus 385 -F~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIV 446 (847)
+.|+.+ +|+.|+|||+.+|+|+. .++.+|+
T Consensus 146 g~~P~~~--------------------------~G~~yvDGGv~dnlPv~------~~~~~I~ 176 (252)
T cd07221 146 GLIPPSF--------------------------RGVRYVDGGVSDNVPFF------DAKTTIT 176 (252)
T ss_pred CCCCeEE--------------------------CCEEEEeCCcccCCCcc------CCCCeEE
Confidence 456666 68899999999999985 4555665
No 22
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.91 E-value=8e-24 Score=220.81 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=118.6
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCCCC--ceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccccccccccchhHHHH
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKLMP--RIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSLQFFDQLGGIFSIVR 307 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gLlP--dIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l~~fd~~~~l~~~l~ 307 (847)
+|+|||||.+|+||+||+++|+|+|++| +.|+|+||||++|++|+++.. +|+.+++.+...+
T Consensus 1 glsfsggG~lg~yh~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~~~~~~--------------- 65 (233)
T cd07224 1 GFSFSAAGLLFPYHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATEELAED--------------- 65 (233)
T ss_pred CeeecchHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------
Confidence 5899999999999999999999999995 589999999999999999954 4576665542110
Q ss_pred HhhcCCcccc-HHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceec-cCCCccHHHHHhhhcCCCCcc
Q 003105 308 RVMTQGAVHD-IRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYL-TSPHVVIWSAVTASCAFPGLF 385 (847)
Q Consensus 308 r~l~~G~l~D-~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYl-TsPnVlIwsAV~AS~AiPglF 385 (847)
....|.+++ ...+++.+++.+++.+++++-+ + .+.|++|+..++....+...+ +..+ +.+||+|||++|++|
T Consensus 66 -~~~~~~~~~~~~~l~~~l~~~lp~d~~e~~~~--~-~l~i~~T~~~~~~~~~~v~~f~~~~~--l~~al~AS~~iP~~~ 139 (233)
T cd07224 66 -CRSNGTAFRLGGVLRDELDKTLPDDAHERCNR--G-RIRVAVTQLFPVPRGLLVSSFDSKSD--LIDALLASCNIPGYL 139 (233)
T ss_pred -HHhcCCcccHHHHHHHHHHHHcCcHHHHHhcC--C-CEEEEEEecccCCCceEEEecCCcch--HHHHHHHhccCCccc
Confidence 011223333 2457778888888887776522 3 588999998765434444434 4455 679999999999999
Q ss_pred cc---eEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHH
Q 003105 386 EA---QELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMM 433 (847)
Q Consensus 386 ~P---V~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~ 433 (847)
+| +++ +|+.|+|||+.+|+|+.
T Consensus 140 ~p~~~v~~--------------------------~G~~~vDGG~~~~~P~~ 164 (233)
T cd07224 140 APWPATMF--------------------------RGKLCVDGGFALFIPPT 164 (233)
T ss_pred CCCCCeeE--------------------------CCEEEEeCCcccCCCCC
Confidence 85 455 78999999999999985
No 23
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.91 E-value=8.1e-24 Score=222.48 Aligned_cols=162 Identities=19% Similarity=0.329 Sum_probs=114.0
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCCC----CceEeecchHHHHHHHHhcCC--hhhhHHHHHhhhccccccccccchhH
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKLM----PRIIAGSSVGSIICSAVATRS--WPELQSFFEDSWHSLQFFDQLGGIFS 304 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gLl----PdIISGTSaGAIVAAllatgt--~eEL~~~l~~~~~~l~~fd~~~~l~~ 304 (847)
.|+|+|||++|+||+||+++|+|+|+. ++.|+||||||++|++|++.. .+++.+++....... .+. .
T Consensus 1 ~L~l~GGG~rG~yhiGVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~~~~~~~~~~~~~~~~~~~~--~~~--~--- 73 (246)
T cd07222 1 NLSFAACGFLGIYHLGAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLTAPEKIEECKEFTYKFAEEV--RKQ--R--- 73 (246)
T ss_pred CeeEcccHHHHHHHHHHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhcChHHHHHHHHHHHHHHHHH--Hhc--c---
Confidence 389999999999999999999999985 899999999999999999642 123333222110000 000 0
Q ss_pred HHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceec-cCCCccHHHHHhhhcCCCC
Q 003105 305 IVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYL-TSPHVVIWSAVTASCAFPG 383 (847)
Q Consensus 305 ~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYl-TsPnVlIwsAV~AS~AiPg 383 (847)
+ ..+.. .+...+.|++.+++.+++ .+.+ ....++.|++|+..+++. .++..+ +..+ +.+||+||||+|+
T Consensus 74 -~-~~~~~-~~~~~~~l~~~l~~~lp~-~~~~---~~~~~l~I~aTdl~tg~~-v~~~~f~s~~~--L~~av~AS~aiP~ 143 (246)
T cd07222 74 -F-GAMTP-GYDFMARLRKGIESILPT-DAHE---LANDRLHVSITNLKTRKN-YLVSNFTSRED--LIKVLLASCYVPV 143 (246)
T ss_pred -c-CCCCC-cchHHHHHHHHHHHHCCH-HHHh---cCCCcEEEEEEECCCCCe-EEEeccCCcch--HHHHHHHhhcCcc
Confidence 0 00111 222345678888888876 3443 334668999999998864 222222 3344 7899999999999
Q ss_pred c--ccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHH
Q 003105 384 L--FEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQL 435 (847)
Q Consensus 384 l--F~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL 435 (847)
+ |+|+++ +|+.|+|||+.+|+|+...
T Consensus 144 ~~g~~pv~~--------------------------~G~~~vDGGv~~~~P~~~~ 171 (246)
T cd07222 144 YAGLKPVEY--------------------------KGQKWIDGGFTNSLPVLPV 171 (246)
T ss_pred ccCCCCeEE--------------------------CCEEEEecCccCCCCCCCC
Confidence 8 589987 7899999999999998653
No 24
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.90 E-value=5.3e-23 Score=238.76 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=192.0
Q ss_pred HHHHHHhhhccCc-eEEEEcCCchhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccc
Q 003105 217 LAFMHETRHAFGR-TALLLSGGASLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQF 295 (847)
Q Consensus 217 l~Ff~~~r~s~Gr-tALVLSGGGarGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~ 295 (847)
.||-+-+|.--|+ +||||+||||||++|+|||+||+|+|++.|+|.|||+||++||+||.-.+ +...+.. ..+|
T Consensus 826 sDFsRLAR~LtGnaIgLVLGGGGARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e~d--~~~v~~r---ak~f 900 (1158)
T KOG2968|consen 826 SDFSRLARILTGNAIGLVLGGGGARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEERD--LVPVFGR---AKKF 900 (1158)
T ss_pred chHHHHHHHHhCCeEEEEecCcchhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhccCc--chHHHHH---HHHH
Confidence 6888888887886 89999999999999999999999999999999999999999999997532 1111111 0012
Q ss_pred cccccchhHHHHH-hhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHH
Q 003105 296 FDQLGGIFSIVRR-VMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSA 374 (847)
Q Consensus 296 fd~~~~l~~~l~r-~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsA 374 (847)
+..+.+++..+.. .++.-.++-+..+.+.+...+||..+|+.+-. -++|| |+....+. ..-+++. +|.-
T Consensus 901 ~~~mssiw~~llDLTyP~tsmftGh~FNrsI~~~Fgd~~IEDlWi~---yfciT-TdIt~S~m----riH~~G~--~WrY 970 (1158)
T KOG2968|consen 901 AGKMSSIWRLLLDLTYPITSMFTGHEFNRSIHSTFGDVLIEDLWIP---YFCIT-TDITSSEM----RVHRNGS--LWRY 970 (1158)
T ss_pred HHHHHHHHHHHHhccccchhccchhhhhhHHHHHhcccchhhhhhe---eeecc-cccchhhh----hhhcCCc--hHHH
Confidence 2222333332221 12334456667788999999999999998632 23332 23222211 1223344 7999
Q ss_pred HhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcC
Q 003105 375 VTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIS 454 (847)
Q Consensus 375 V~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~ 454 (847)
|+||+++-|+.||..- | .+|+.++|||+.+|+|++.++.| |++++|+++|.-..
T Consensus 971 vRASMsLaGylPPlcd-------------------p-----~dGhlLlDGGYvnNlPadvmrsl-Ga~~iiAiDVGS~d- 1024 (1158)
T KOG2968|consen 971 VRASMSLAGYLPPLCD-------------------P-----KDGHLLLDGGYVNNLPADVMRSL-GAKVIIAIDVGSQD- 1024 (1158)
T ss_pred HHhhccccccCCCCCC-------------------C-----CCCCEEecccccccCcHHHHHhc-CCcEEEEEeccCcc-
Confidence 9999999999999762 1 26789999999999999999999 99999999987421
Q ss_pred cccccchhhhccchh-------------hHHHHhhHhHHHHHHHHHHHHhhccChhhHHHHHccccCCcEEEEcCC---C
Q 003105 455 PLLRLKEFVRAYGGN-------------FAAKLAHLTEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPA---T 518 (847)
Q Consensus 455 PFl~~~~~~~~~~~~-------------~~~~L~~l~~~Ei~hrl~ql~~lgl~~~~l~~l~~Q~~~GDItIvP~~---~ 518 (847)
+.....||.. |..+..-+-..||..|+.-+.-. ..+.. ...-.+.+.+.|++ +
T Consensus 1025 -----etdl~~YGDslSG~W~L~krwnPf~~~~kv~nm~EIQsRLaYVscV----rqlE~--vK~~~yc~YlRPPI~~f~ 1093 (1158)
T KOG2968|consen 1025 -----ETDLMNYGDSLSGFWILFKRWNPFGTKVKVPNMAEIQSRLAYVSCV----RQLEV--VKNSPYCEYLRPPIEKFK 1093 (1158)
T ss_pred -----cCCcccccccccceeeeeecccccCCCCCCCCHHHHHHHHHHHHHH----HHHHH--HhcCCCeEEECCCchhcc
Confidence 1111122221 11111222246888887765432 11211 23345678899986 4
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 003105 519 VSQYLKIIQNPTHVELQKAANQGRRCTWEKLSAIKANCGIEL 560 (847)
Q Consensus 519 ~~Df~rIl~nPt~e~l~~~I~~GEraTwpkL~~Ir~r~~IE~ 560 (847)
..||.| .++..+.|+.-+..++...+..-.+++
T Consensus 1094 TldF~k---------FdeI~~vGy~~gk~~~~~~~~~~~~d~ 1126 (1158)
T KOG2968|consen 1094 TLDFGK---------FDEIYEVGYQYGKEAFEKLKTDGVLDR 1126 (1158)
T ss_pred cccccc---------HHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 556654 888999999999999888777655543
No 25
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=99.89 E-value=9.1e-23 Score=219.91 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=129.3
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhC-CC----CCceEeecchHHHHHHHHhcC--ChhhhHHHHHhhhcccccccccc
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVEN-KL----MPRIIAGSSVGSIICSAVATR--SWPELQSFFEDSWHSLQFFDQLG 300 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~-gL----lPdIISGTSaGAIVAAllatg--t~eEL~~~l~~~~~~l~~fd~~~ 300 (847)
|-..|+|+|||+||++|+|||++|+++ +. .+|+|+|||+|||||+++|+. +.+|+.+++..... +.|....
T Consensus 7 ~~riLsLdGGGirG~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~~--~iF~~~~ 84 (308)
T cd07211 7 GIRILSIDGGGTRGVVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLGK--DVFSQNT 84 (308)
T ss_pred CcEEEEECCChHHHHHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHHH--HhcCCCc
Confidence 557899999999999999999999997 33 369999999999999999984 67899998876321 2232211
Q ss_pred chhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhc-cCCEEEEEEeCCCCC-CCCcc-ceec----------cCC
Q 003105 301 GIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDM-TGRILGITVCSPRKH-EPPRC-LNYL----------TSP 367 (847)
Q Consensus 301 ~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~r-TGRiLnItVt~~~~~-~~p~L-LNYl----------TsP 367 (847)
... ...+.+..+..+|.+.|++++++.+|+.++.+.... ....+.++++..+.. ..|.+ -||- .+.
T Consensus 85 ~~~-~~~~~~~~~~~y~~~~l~~~l~~~~g~~~l~~~~~~~~~p~~~v~st~~~~~~~~p~~f~ny~~~~~~~~~~~~~~ 163 (308)
T cd07211 85 YIS-GTSRLVLSHAYYDTETWEKILKEMMGSDELIDTSADPNCPKVACVSTQVNRTPLKPYVFRNYNHPPGTRSHYLGSC 163 (308)
T ss_pred ccc-chhhhhccCCccChHHHHHHHHHHhCCccccccccCCCCCEEEEEEEeccCCCCceEEEeCCCCCCCcccccCCcc
Confidence 011 111223345689999999999999999888765332 334455555544322 12322 2443 233
Q ss_pred CccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHH
Q 003105 368 HVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQ 434 (847)
Q Consensus 368 nVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~r 434 (847)
++.+|+|++||||+|++|+|+++ ++..|+|||+.+|+|+..
T Consensus 164 ~~~l~dA~rASsAaP~~F~p~~i--------------------------~~~~~vDGGv~aNnP~~~ 204 (308)
T cd07211 164 KHKLWEAIRASSAAPGYFEEFKL--------------------------GNNLHQDGGLLANNPTAL 204 (308)
T ss_pred cccHHHHHHHhccchhcCCcEEE--------------------------CCCeEEECCcccCCcHHH
Confidence 56899999999999999999998 567899999999999754
No 26
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=99.89 E-value=9.7e-23 Score=224.67 Aligned_cols=175 Identities=17% Similarity=0.205 Sum_probs=123.4
Q ss_pred ccCceEEEEcCCchhHHHHHHHHHHHHhCCC----CCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhcccccccccc
Q 003105 226 AFGRTALLLSGGASLGAFHVGVVKTLVENKL----MPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLG 300 (847)
Q Consensus 226 s~GrtALVLSGGGarGlyHiGVLKAL~E~gL----lPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~ 300 (847)
.-++.+|+|+|||++|+||+||+++|+|++. .++.|+||||||++|++|+++ ..+|+.+++.......+ ....
T Consensus 9 ~~~~~gLvFsGGGfrGiYHvGVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG~s~de~~r~~~~~~~~~r--~~~l 86 (382)
T cd07219 9 PDTPHSISFSGSGFLSFYQAGVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCGISMDEYLRVLNVGVAEVR--KSFL 86 (382)
T ss_pred CCCCceEEEcCcHHHHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--Hhhc
Confidence 3467899999999999999999999999984 379999999999999999999 55677666543111100 0000
Q ss_pred chhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcC
Q 003105 301 GIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCA 380 (847)
Q Consensus 301 ~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~A 380 (847)
+++ -+...++ +.++++|.+.+++.+|+++ ...|.|++|+..+++...+-.+-+..+ +.+||+|||+
T Consensus 87 G~~------~p~~~l~--~~lr~~L~~~LP~da~e~~----~g~L~IsaTdl~tGknv~fS~F~S~~d--LidAV~ASca 152 (382)
T cd07219 87 GPL------SPSCKMV--QMMRQFLYRVLPEDSYKVA----TGKLHVSLTRVTDGENVVVSEFTSKEE--LIEALYCSCF 152 (382)
T ss_pred cCc------cccchHH--HHHHHHHHhhCcHhhHHhC----CCcEEEEEEECCCCCEEEEeccCCcch--HHHHHHHHcc
Confidence 000 0111111 4567778887777666554 456899999998876422222223444 7899999999
Q ss_pred CCCcc--cceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEE
Q 003105 381 FPGLF--EAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVS 447 (847)
Q Consensus 381 iPglF--~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVS 447 (847)
+|+++ .|+.+ +|+.|+|||+.+|+|+.. ..+.|-||
T Consensus 153 IP~y~G~~Pp~i--------------------------rG~~yVDGGvsdnlPv~~-----~~~TitvS 190 (382)
T cd07219 153 VPVYCGLIPPTY--------------------------RGVRYIDGGFTGMQPCSF-----WTDSITIS 190 (382)
T ss_pred CccccCCcCeEE--------------------------CCEEEEcCCccCCcCccC-----CCCcEEEc
Confidence 99885 35565 788999999999999852 34556565
No 27
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=99.89 E-value=1.5e-21 Score=214.91 Aligned_cols=181 Identities=19% Similarity=0.255 Sum_probs=131.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhC-------CC----CCceEeecchHHHHHHHHhcC--------ChhhhHHHHHhhh
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVEN-------KL----MPRIIAGSSVGSIICSAVATR--------SWPELQSFFEDSW 290 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~-------gL----lPdIISGTSaGAIVAAllatg--------t~eEL~~~l~~~~ 290 (847)
..|+|+|||+||++|++||++|+++ +. .||+|+|||+|||+|++++++ +.+|+.+++.+..
T Consensus 5 rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~ 84 (349)
T cd07214 5 TVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYLENG 84 (349)
T ss_pred EEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhh
Confidence 6899999999999999999999986 34 589999999999999999995 3468888876532
Q ss_pred ccccccccccchhHHHHHhhc--CCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceecc---
Q 003105 291 HSLQFFDQLGGIFSIVRRVMT--QGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLT--- 365 (847)
Q Consensus 291 ~~l~~fd~~~~l~~~l~r~l~--~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlT--- 365 (847)
..+|......+..+++.+. .+..++.+.|++++++.+|+.++.|+ .+.+.|++++..++++..+-+|-.
T Consensus 85 --~~iF~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~----~~~v~I~a~dl~~~~p~~F~~~~~~~~ 158 (349)
T cd07214 85 --PKIFPQSTGQFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDT----LTNVVIPTFDIKLLQPVIFSSSKAKND 158 (349)
T ss_pred --HHhcCCCcccchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhh----CCceEEEeEECCCCCeEEEeCccccCC
Confidence 1233221111111111111 24678999999999999999999886 346788888888776533333321
Q ss_pred -CCCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHH
Q 003105 366 -SPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMM 433 (847)
Q Consensus 366 -sPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~ 433 (847)
..++.+|+|++||||+|++|+|+++...+..|. ..+..|+|||+.+|+|+.
T Consensus 159 ~~~~~~l~da~rASSAaPtyFpp~~i~~~~~~g~-----------------~~~~~~vDGGv~aNNP~~ 210 (349)
T cd07214 159 KLTNARLADVCISTSAAPTYFPAHYFTTEDSNGD-----------------IREFNLVDGGVAANNPTL 210 (349)
T ss_pred cccCcCHHHHHHHhcccccccCCeEeecccCCCC-----------------cceEEEecCceecCCHHH
Confidence 245679999999999999999999821111111 134579999999999964
No 28
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.89 E-value=2.7e-22 Score=211.78 Aligned_cols=163 Identities=22% Similarity=0.297 Sum_probs=115.1
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhCCCC----CceEeecchHHHHHHHHhcCCh-hhhHHHHHhhhccc--ccccccc
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVENKLM----PRIIAGSSVGSIICSAVATRSW-PELQSFFEDSWHSL--QFFDQLG 300 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~gLl----PdIISGTSaGAIVAAllatgt~-eEL~~~l~~~~~~l--~~fd~~~ 300 (847)
++.+|+|+|||++|+||+||+++|+|+|+. ++.|+|+||||++|++|+++.. ++..+.+.+..... .++
T Consensus 3 ~~~~LsfsGGG~rG~yh~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~~~~~~~~~~~~a~~~r~~~~---- 78 (249)
T cd07220 3 SGWNISFAGCGFLGVYHVGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVCLGECGASVIRVAKEARKRFL---- 78 (249)
T ss_pred CCceEEEeChHHHHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhHhhc----
Confidence 568999999999999999999999999975 8999999999999999999854 35444333211000 011
Q ss_pred chhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcC
Q 003105 301 GIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCA 380 (847)
Q Consensus 301 ~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~A 380 (847)
+.+. +...+ .+.+++.+.+.+++..++.+ ...|.|++|+..+++...+-++.+..+ +.+|++|||+
T Consensus 79 g~~~------~~~~l--~~~l~~~l~~~lp~~a~~~~----~~~l~is~T~~~tg~~~~~s~f~s~~d--Li~al~AScs 144 (249)
T cd07220 79 GPLH------PSFNL--VKILRDGLLRTLPENAHELA----SGRLGISLTRVSDGENVLVSDFNSKEE--LIQALVCSCF 144 (249)
T ss_pred cCcc------ccchH--HHHHHHHHHHHCChhhHHHC----CCcEEEEEEECCCCCEEEEecCCCcch--HHHHHHHhcc
Confidence 0000 00001 13467777777777655543 456899999998876432223334455 6899999999
Q ss_pred CCCccc--ceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHH
Q 003105 381 FPGLFE--AQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQ 434 (847)
Q Consensus 381 iPglF~--PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~r 434 (847)
+|+++. |+.+ +|..|+|||+.+|+|+..
T Consensus 145 iP~~~g~~P~~~--------------------------~G~~yvDGGvsdnlPv~~ 174 (249)
T cd07220 145 IPVYCGLIPPTL--------------------------RGVRYVDGGISDNLPQYE 174 (249)
T ss_pred CccccCCCCeeE--------------------------CCEEEEcCCcccCCCCCC
Confidence 997753 4445 678999999999999864
No 29
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=203.60 Aligned_cols=277 Identities=16% Similarity=0.193 Sum_probs=184.6
Q ss_pred hhccCceEEEEcCCchhHHHHHHHHHHHH-hCCCCCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccch
Q 003105 224 RHAFGRTALLLSGGASLGAFHVGVVKTLV-ENKLMPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGI 302 (847)
Q Consensus 224 r~s~GrtALVLSGGGarGlyHiGVLKAL~-E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l 302 (847)
...+|++|||+.|||.||+|.+|||.+|. .+.+.++.|.||||||+.++.|.|.....-.+++.+...+-++|.
T Consensus 6 ~~~~~kvaLV~EGGG~RgifTAGVLD~fl~a~~~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~~~yt~d~ry~~----- 80 (292)
T COG4667 6 PYQPGKVALVLEGGGQRGIFTAGVLDEFLRANFNPFDLVVGVSAGALNLVAYLSKQRGRARRVIVEYTTDRRYFG----- 80 (292)
T ss_pred CcCCCcEEEEEecCCccceehHHHHHHHHHhccCCcCeeeeecHhHHhHHHHhhcCCchHHHHHHHhhcchhhcc-----
Confidence 35689999999999999999999999999 678889999999999999999999877766666665443344442
Q ss_pred hHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCc-cHHHHHhhhcCC
Q 003105 303 FSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHV-VIWSAVTASCAF 381 (847)
Q Consensus 303 ~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnV-lIwsAV~AS~Ai 381 (847)
+.++++.|.+++.+-+.+.+-...-...|+...+.+|+ +.+++++..+++.+ |.-.|++ -+-+.++||||+
T Consensus 81 ---~~~~vr~gn~~n~d~~~~~~~~~~~~fD~~tf~~~~~k-~~~~~~~~~~g~~~----~~~~~~~~~~m~viRASSai 152 (292)
T COG4667 81 ---PLSFVRGGNYFNLDWAFEETPQKLFPFDFDTFSQDKGK-FFYMATCRQDGEAV----YYFLPDVFNWLDVIRASSAI 152 (292)
T ss_pred ---hhhhhccCcccchHHHHhhccCcCCCccHHHHhcccCC-eEEEEEeccCCccc----eeecccHHHHHHHHHHhccC
Confidence 34577888899976655554444434566666667788 55666666666543 4434443 255899999999
Q ss_pred CCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHhcCCCEEEEEccCCCcCcccccch
Q 003105 382 PGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHISPLLRLKE 461 (847)
Q Consensus 382 PglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ELFnVn~fIVSqvnPhv~PFl~~~~ 461 (847)
|++.+||+| +|..|+||||.+.+|+++..++ |.+.+||+.++|.-.- .++
T Consensus 153 Pf~~~~V~i--------------------------~G~~YlDGGIsdsIPvq~a~~~-G~~~ivVI~Trps~~~---~~p 202 (292)
T COG4667 153 PFYSEGVEI--------------------------NGKNYLDGGISDSIPVKEAIRL-GADKIVVIRTRPSDYY---KTP 202 (292)
T ss_pred CCCCCCeEE--------------------------CCEecccCcccccccchHHHHc-CCceEEEEEechHHhc---cCC
Confidence 988899999 7899999999999999999999 9999999999873210 011
Q ss_pred hhhccchhhHHHHhhHhHHHHHHHHHHHHhhccChh-hHHHHHccccCCcEE-EEcCCChhhhhhhccCCCHHHHHHHHH
Q 003105 462 FVRAYGGNFAAKLAHLTEMEVKHRCNQILELGFPLG-GLAKLFAQDWEGDVT-VVMPATVSQYLKIIQNPTHVELQKAAN 539 (847)
Q Consensus 462 ~~~~~~~~~~~~L~~l~~~Ei~hrl~ql~~lgl~~~-~l~~l~~Q~~~GDIt-IvP~~~~~Df~rIl~nPt~e~l~~~I~ 539 (847)
.+-+.+.. .-.|+.|.++++..-.-.-+ .+..+..++-.+.|- |.|+- ..+..++=.| ...++..-.
T Consensus 203 ---~~~~~~~~-----~lr~~~~Lv~~l~~r~~~Y~~~~q~I~~le~~~~ifvi~p~k-~l~i~~~e~~--~~~l~~~Y~ 271 (292)
T COG4667 203 ---QWFKRLEL-----WLRELPHLVELLQHREKLYNDIQQFILKLENKGRIFVIRPPK-PLKIKRLEKN--LPKLRADYD 271 (292)
T ss_pred ---CcchHHHH-----HHHHhHHHHHHHHHhhhhHHHHHHHHhccccCCceEEECCCC-Ccchhhhccc--hHHHHHHHH
Confidence 11111111 11233343333322110001 122233334456655 44543 2233333333 466888888
Q ss_pred HHHHHHHHHHHHHHH
Q 003105 540 QGRRCTWEKLSAIKA 554 (847)
Q Consensus 540 ~GEraTwpkL~~Ir~ 554 (847)
.|..++..-++.|..
T Consensus 272 lG~~~grk~~a~l~~ 286 (292)
T COG4667 272 LGRLCGRKFLATLGK 286 (292)
T ss_pred HHHHhhHhHHHHHHH
Confidence 888887666665543
No 30
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=99.88 E-value=1.7e-23 Score=201.13 Aligned_cols=177 Identities=27% Similarity=0.371 Sum_probs=108.5
Q ss_pred EEEcCCchhHHHHHHHHHHH-HhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhcc----cc--ccccccchh
Q 003105 232 LLLSGGASLGAFHVGVVKTL-VENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHS----LQ--FFDQLGGIF 303 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL-~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~----l~--~fd~~~~l~ 303 (847)
|||+|||++|+||+||+++| .+.+..||+|+|||+||++|++++++ ..++..+.+...+.. .. .........
T Consensus 1 LvlsGGG~rg~~~~G~l~~L~~~~~~~~d~i~GtS~Gal~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKALGQGLGERFDVISGTSAGALNAALLALGYDPDESLDQFYDLWRNLFFSSNLMKRRRPRKAF 80 (204)
T ss_dssp EEE---CCGCCCCHHHHHHHCCTGCCT-SEEEEECCHHHHHHHHHTC-TCCCCCCHHCCHHHHHHHCCCTH------HHT
T ss_pred CEEcCcHHHHHHHHHHHHHHhhhhCCCccEEEEcChhhhhHHHHHhCCCHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 89999999999999999999 77789999999999999999999998 333322222221110 00 000000111
Q ss_pred HHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEE--------------EEeCCCC---CCCCccceeccC
Q 003105 304 SIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGI--------------TVCSPRK---HEPPRCLNYLTS 366 (847)
Q Consensus 304 ~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnI--------------tVt~~~~---~~~p~LLNYlTs 366 (847)
.........+++++...+.+.++..+++.++++......+.... ..+.... ........+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
T PF01734_consen 81 RRLRGLFGGSGLFDSEPLRDWLRRVLGDLTLEEFSARLPRAIGAADDFTTRSRSIFQSPSSPFRASSNNFNESRSRYDFD 160 (204)
T ss_dssp -------SSS-SS--HHHHHHHHHHHCCHCHHHHCTCECCC-EE--------------EEECCCCECCEEECCCCCTTCC
T ss_pred ccccccccCccchhHHHHHHHHHHhccccCHHHhhhccccccccccccccccccccccccccccccccccccccccccCC
Confidence 12334455677889999999999999999998875554443110 0000000 000111234455
Q ss_pred CCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHH
Q 003105 367 PHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQ 434 (847)
Q Consensus 367 PnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~r 434 (847)
++..+++|++||||+|++|+|+++ ++.+|+|||+.+|+|+..
T Consensus 161 ~~~~l~~a~~AS~a~P~~~~p~~~--------------------------~g~~~~DGG~~~n~P~~~ 202 (204)
T PF01734_consen 161 PDVPLWDAVRASSAIPGIFPPVKI--------------------------DGEYYIDGGILDNNPIEA 202 (204)
T ss_dssp CTSBHHHHHHHCCHSTTTSTTEEE--------------------------TS-EEEEGGGCS---GGG
T ss_pred CcchHHHhhChhccccccCCCEEE--------------------------CCEEEEecceeecccccc
Confidence 677899999999999999999998 667999999999999864
No 31
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.88 E-value=9.2e-21 Score=206.68 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=124.7
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhC-----C-----C--CCceEeecchHHHHHHHHhcC--------ChhhhHHHHHhhh
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVEN-----K-----L--MPRIIAGSSVGSIICSAVATR--------SWPELQSFFEDSW 290 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~-----g-----L--lPdIISGTSaGAIVAAllatg--------t~eEL~~~l~~~~ 290 (847)
.|+|+|||+||+++++||+.|+++ | + .+|+|+|||+|||||+++++. +.+|+.+++.+..
T Consensus 2 ILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~~ 81 (329)
T cd07215 2 ILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLERG 81 (329)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHhh
Confidence 699999999999999999999985 2 1 489999999999999998752 4568888776522
Q ss_pred ccccccccccchhHHHHHh-hcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceec----c
Q 003105 291 HSLQFFDQLGGIFSIVRRV-MTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYL----T 365 (847)
Q Consensus 291 ~~l~~fd~~~~l~~~l~r~-l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYl----T 365 (847)
. ..|... .+..+... .-.+..++.+.|++.+++.+|+.+|.+. .+.+.|++++..++++..+-++- .
T Consensus 82 ~--~IF~~~--~~~~~~~~~~~~~~~y~~~~L~~~L~~~fg~~~l~d~----~~~~~i~a~d~~~~~~~~f~~~~~~~~~ 153 (329)
T cd07215 82 N--YIFKKK--IWNKIKSRGGFLNEKYSHKPLEEVLLEYFGDTKLSEL----LKPCLITSYDIERRSPHFFKSHTAIKNE 153 (329)
T ss_pred H--hhcccc--hhhhhhhhccccccccCcHHHHHHHHHHhCCCchhhh----cCCceEEeeecCCCCceEecCcccCCCc
Confidence 1 223211 11111100 1124567889999999999999999886 34577888888776543222221 1
Q ss_pred CCCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHH
Q 003105 366 SPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQL 435 (847)
Q Consensus 366 sPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL 435 (847)
..++.+|+|++||||+|++|+|+++- +.+| ....|+|||+.+|+|+..+
T Consensus 154 ~~~~~l~da~~ASsAaP~~F~p~~i~--~~~g-------------------~~~~~vDGGv~aNnP~~~a 202 (329)
T cd07215 154 QRDFYVRDVARATSAAPTYFEPARIH--SLTG-------------------EKYTLIDGGVFANNPTLCA 202 (329)
T ss_pred ccCccHHHHhHHHhhcccccCceEee--cCCC-------------------cEEEEecCceecCCHHHHH
Confidence 23567999999999999999999981 1011 2246899999999997443
No 32
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=99.88 E-value=2.9e-22 Score=220.48 Aligned_cols=161 Identities=23% Similarity=0.245 Sum_probs=119.1
Q ss_pred cCceEEEEcCCchhHHHHHHHHHHHHhCCCC----CceEeecchHHHHHHHHhcCC-hhhhHHHHHhhhccccccccccc
Q 003105 227 FGRTALLLSGGASLGAFHVGVVKTLVENKLM----PRIIAGSSVGSIICSAVATRS-WPELQSFFEDSWHSLQFFDQLGG 301 (847)
Q Consensus 227 ~GrtALVLSGGGarGlyHiGVLKAL~E~gLl----PdIISGTSaGAIVAAllatgt-~eEL~~~l~~~~~~l~~fd~~~~ 301 (847)
-|+..|+|||||.+|+||+||+++|.|++.. ++-|+|+|||||+||+++++. .+++.+.+.+.....+.
T Consensus 7 ~~~~~LsfSGgGflG~yHvGV~~~L~e~~p~ll~~~~~iaGaSAGAL~aa~~a~g~~~~~~~~~i~~ia~~~r~------ 80 (405)
T cd07223 7 EGGWNLSFSGAGYLGLYHVGVTECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSADFCCSNLLGMVKHLER------ 80 (405)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHHhCchhhccCCeeeeeCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhh------
Confidence 3789999999999999999999999999721 345999999999999999984 44333222211000000
Q ss_pred hhHHHHHhhcCCcc---cc-HHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhh
Q 003105 302 IFSIVRRVMTQGAV---HD-IRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTA 377 (847)
Q Consensus 302 l~~~l~r~l~~G~l---~D-~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~A 377 (847)
..-|.+ ++ .+.+++.|++++++-.++.+ +| .|.|++|+..+++...+-+|.+..+ +.+|+.|
T Consensus 81 --------~~lG~~~p~f~l~~~lr~~L~~~LP~daHe~~---sg-rL~ISlT~l~~gknvlvS~F~Sred--LIqALlA 146 (405)
T cd07223 81 --------LSLGIFHPAYAPIEHIRQQLQESLPPNIHILA---SQ-RLGISMTRWPDGRNFIVTDFATRDE--LIQALIC 146 (405)
T ss_pred --------hccCCCCccccHHHHHHHHHHHhCCchhhHHh---CC-ceEEEEEEccCCceEEecCCCCHHH--HHHHHHH
Confidence 011211 11 35588888888888777665 34 5899999987776433445667777 6899999
Q ss_pred hcCCCCc--ccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHH
Q 003105 378 SCAFPGL--FEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMM 433 (847)
Q Consensus 378 S~AiPgl--F~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~ 433 (847)
||.+|++ |.|+.+ .|++|+|||+.+|+|+.
T Consensus 147 Sc~IP~y~g~~P~~~--------------------------rG~~yVDGGvsnNLP~~ 178 (405)
T cd07223 147 TLYFPFYCGIIPPEF--------------------------RGERYIDGALSNNLPFS 178 (405)
T ss_pred hccCccccCCCCceE--------------------------CCEEEEcCcccccCCCc
Confidence 9999999 788877 78999999999999974
No 33
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.87 E-value=1e-21 Score=216.04 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=128.1
Q ss_pred ceEEEEcCCchhHHHHHHHHHHHHhC------------CCCCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccc
Q 003105 229 RTALLLSGGASLGAFHVGVVKTLVEN------------KLMPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQF 295 (847)
Q Consensus 229 rtALVLSGGGarGlyHiGVLKAL~E~------------gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~ 295 (847)
|..|+|+|||+||++|+|||++|++. +..+|+|+|||+|||||++++.+ +.+|+.+++.+... .+
T Consensus 1 ~rILsLDGGGiRGi~~~gvL~~LE~~l~~~~~~p~~~l~d~FDlIaGTStGgIIAa~la~g~s~~ei~~~y~~~~~--~i 78 (344)
T cd07217 1 KKILALDGGGIRGLLSVEILGRIEKDLRTHLDDPEFRLGDYFDFVGGTSTGSIIAACIALGMSVTDLLSFYTLNGV--NM 78 (344)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCccccccccccEEEEecHHHHHHHHHHcCCCHHHHHHHHHhhhh--hh
Confidence 35899999999999999999999885 44589999999999999999997 77899998876321 23
Q ss_pred cccccchhHHHHHhhcCC---ccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccce-----ecc--
Q 003105 296 FDQLGGIFSIVRRVMTQG---AVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLN-----YLT-- 365 (847)
Q Consensus 296 fd~~~~l~~~l~r~l~~G---~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLN-----YlT-- 365 (847)
|... . +.+.+..+ ..++.+.|++.+++.+|+.+|.+. ..+..+.|++++..++++..+.| |..
T Consensus 79 F~~~--~---~~~~l~~~~~~~~y~~~~L~~~L~~~fg~~~l~d~--~~~~~l~i~a~dl~tg~p~~f~~~~~~~~~~~~ 151 (344)
T cd07217 79 FDKA--W---LAQRLFLNKLYNQYDPTNLGKKLNTVFPETTLGDD--TLRTLLMIVTRNATTGSPWPVCNNPEAKYNDSD 151 (344)
T ss_pred cCch--h---hhhhccccccccccCcHHHHHHHHHHcCceeeccc--ccCceEEEEEEecCCCCeeEeecCchhhccccc
Confidence 3321 0 11111111 237889999999999999999863 23457888888888776532333 221
Q ss_pred ----CCCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccc-cCchHH
Q 003105 366 ----SPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLE-IDLPMM 433 (847)
Q Consensus 366 ----sPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~-~NlPv~ 433 (847)
..++.+|+|++||||+|++|+|+.+- ...| .+..|+|||+. .|+|+.
T Consensus 152 ~~~~~~~~~L~da~rASsAaPt~FpP~~i~--~~~~-------------------~~~~lVDGGv~aaNNP~l 203 (344)
T cd07217 152 RSDCNLDLPLWQLVRASTAAPTFFPPEVVS--IAPG-------------------TAFVFVDGGVTTYNNPAF 203 (344)
T ss_pred ccCcccCCcHHHHHHHHccCccccCceEEE--ecCC-------------------ceEEEECCccccccCHHH
Confidence 23567999999999999999998871 0000 14589999997 588974
No 34
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=99.87 E-value=1.9e-21 Score=211.25 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=117.3
Q ss_pred EEEcCCchhHHHHHHHHHHHHhC-CCC----CceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhHH
Q 003105 232 LLLSGGASLGAFHVGVVKTLVEN-KLM----PRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFSI 305 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~-gLl----PdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~~ 305 (847)
|+|+|||+||++|+|||++|++. |.. ||+|+|||+|||||++++.+ +.+|+.+++.....
T Consensus 2 LsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s~~e~~~~y~~~~~-------------- 67 (312)
T cd07212 2 LCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKSLREARRLYLRMKD-------------- 67 (312)
T ss_pred EEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCCHHHHHHHHHHhhh--------------
Confidence 89999999999999999999996 875 89999999999999999997 67788888765221
Q ss_pred HHHhhcCCccccHHHHHHHHHHhcCCc-cHHHHHhccCCEEEEEEeCCCC--CCCCccceecc-----------------
Q 003105 306 VRRVMTQGAVHDIRQLQWMLRHLTSNL-TFQEAYDMTGRILGITVCSPRK--HEPPRCLNYLT----------------- 365 (847)
Q Consensus 306 l~r~l~~G~l~D~~~L~~~Lr~~lGdl-TFeEAy~rTGRiLnItVt~~~~--~~~p~LLNYlT----------------- 365 (847)
+++.....+|...|++++++.+|+. ++.+. ....+.|+++..+. .++..+-||-.
T Consensus 68 --~iF~~~~~y~~~~le~~L~~~~g~~~~l~d~---~~p~~~v~~~~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~ 142 (312)
T cd07212 68 --RVFDGSRPYNSEPLEEFLKREFGEDTKMTDV---KYPRLMVTGVLADRQPVQLHLFRNYDPPEDVEEPEKNANFLPPT 142 (312)
T ss_pred --hhCCCCCCCCChHHHHHHHHHHCcCcccccc---CCCeEEEEeEeccCCCcCceeeecCCCCCCchhccccccccccC
Confidence 1122224578899999999999987 67663 33445455444332 11112233321
Q ss_pred -CCCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchH-HHHHHh
Q 003105 366 -SPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPM-MQLKEL 438 (847)
Q Consensus 366 -sPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv-~rL~EL 438 (847)
.-+..||+|++||+|+|++|+|+. .|+|||+.+|+|+ ..+.|.
T Consensus 143 ~~~~~~l~~a~rASsAaP~~F~p~~------------------------------~~vDGGv~~NnP~~~a~~Ea 187 (312)
T cd07212 143 DPAEQLLWRAARSSGAAPTYFRPMG------------------------------RFLDGGLIANNPTLDAMTEI 187 (312)
T ss_pred CcccccHHHHHHhhccccccccccc------------------------------ceecCceeccChHHHHHHHH
Confidence 114679999999999999999972 3789999999998 445554
No 35
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.86 E-value=2.5e-21 Score=207.48 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=122.7
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhCCCC----CceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccchhH
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVENKLM----PRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGIFS 304 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~gLl----PdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l~~ 304 (847)
..|+|+|||+||++|+|||++|++++.. +|+|+|||+|||+|++++++ +.+|+.+++..... ..|.... .
T Consensus 3 riLsLdGGG~RGi~~~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~~~~e~~~~~~~~~~--~iF~~~~--~- 77 (288)
T cd07213 3 RILSLDGGGVKGIVQLVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGYSPRQVLKLYEEVGL--KVFSKSS--A- 77 (288)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCcCHHHHHHHHHHhCc--cccCCCc--c-
Confidence 4899999999999999999999999753 89999999999999999998 56788888876321 2222110 0
Q ss_pred HHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCC-------Cccceecc---CCCccHHHH
Q 003105 305 IVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEP-------PRCLNYLT---SPHVVIWSA 374 (847)
Q Consensus 305 ~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~-------p~LLNYlT---sPnVlIwsA 374 (847)
...+...++ .....++.+++..+++.+|.++ .+.+.|++++..+++. |.+++-+. ..++.+|+|
T Consensus 78 -~~~~~~~~~-~~~~~l~~~l~~~~~~~~l~d~----~~~~~i~a~~~~~~~~~~~~~~~~~~f~n~~~~~~~~~~l~d~ 151 (288)
T cd07213 78 -GGGAGNNQY-FAAGFLKAFAEVFFGDLTLGDL----KRKVLVPSFQLDSGKDDPNRRWKPKLFHNFPGEPDLDELLVDV 151 (288)
T ss_pred -ccccccccC-CchHHHHHHHHHHhCcCCHhhc----CCCEEEEEEeccCCCCCccccccceEeecCCCCCCccccHHHH
Confidence 000111122 2223788899999999999986 4567888888877753 33333222 346679999
Q ss_pred HhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHH
Q 003105 375 VTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQL 435 (847)
Q Consensus 375 V~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL 435 (847)
++||||+|++|+|+. .|+|||+.+|+|+..+
T Consensus 152 ~~ASsAaP~~F~p~~------------------------------~~iDGGv~~NnP~~~a 182 (288)
T cd07213 152 CLRSSAAPTYFPSYQ------------------------------GYVDGGVFANNPSLCA 182 (288)
T ss_pred HHHhccccccchhhh------------------------------ceecceeecCChHHHH
Confidence 999999999999873 3899999999998644
No 36
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.86 E-value=1.2e-21 Score=211.67 Aligned_cols=181 Identities=21% Similarity=0.289 Sum_probs=132.3
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCC-------------CCceEeecchHHHHHHHHhc-C-ChhhhHHHHHhhhccccc
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKL-------------MPRIIAGSSVGSIICSAVAT-R-SWPELQSFFEDSWHSLQF 295 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gL-------------lPdIISGTSaGAIVAAllat-g-t~eEL~~~l~~~~~~l~~ 295 (847)
.|+|+|||+||++|++||++|+++.- .+|+|+|||+|||||++++. + +.+|+.+++.+... ++
T Consensus 3 ILslDGGGiRGl~~~~iL~~le~~l~~~~~~~~~~~~~~~fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~--~i 80 (309)
T cd07216 3 LLSLDGGGVRGLSSLLILKEIMERIDPKEGLDEPPKPCDYFDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAK--KI 80 (309)
T ss_pred EEEEcCCchhHHHHHHHHHHHHHHhhhccccCCCCChhHhcCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhH--Hh
Confidence 69999999999999999999998721 16999999999999999996 4 77899888876332 23
Q ss_pred cccccchhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHh-----ccCCEEEEEEeCCC-CCCCCccceecc----
Q 003105 296 FDQLGGIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYD-----MTGRILGITVCSPR-KHEPPRCLNYLT---- 365 (847)
Q Consensus 296 fd~~~~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~-----rTGRiLnItVt~~~-~~~~p~LLNYlT---- 365 (847)
|..... .... .....+..+|...+++.++..+++.+|++... ..+..+.|++++.. ++++..+-||-.
T Consensus 81 F~~~~~-~~~~-~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~~~~~f~~y~~~~~~ 158 (309)
T cd07216 81 FSRKRL-RLII-GDLRTGARFDSKKLAEAIKVILKELGNDEDDLLDEGEEDGCKVFVCATDKDVTGKAVRLRSYPSKDEP 158 (309)
T ss_pred CCCCCc-cccc-cccccCCCCChHHHHHHHHHHHHhcCCCchhhhccccccCCCEEEEEEeeCCCCceEEEecCCCCCCC
Confidence 322111 0111 12223445699999999999999887765422 13445678888877 655433334432
Q ss_pred --CCCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHH----HHhc
Q 003105 366 --SPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQL----KELF 439 (847)
Q Consensus 366 --sPnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL----~ELF 439 (847)
..++.||+|++||||.|++|+|+++. .++..|+|||+..|+|+..+ ..+|
T Consensus 159 ~~~~~~~l~~a~rASsAaP~~f~p~~~~------------------------~~~~~~vDGGv~~NnP~~~a~~ea~~~~ 214 (309)
T cd07216 159 SLYKNATIWEAARATSAAPTFFDPVKIG------------------------PGGRTFVDGGLGANNPIREVWSEAVSLW 214 (309)
T ss_pred CcccCccHHHHHHHHhhhHhhCCCEEec------------------------CCCceEecCCcccCCcHHHHHHHHHHHh
Confidence 45678999999999999999999971 15678999999999998655 4566
No 37
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=99.78 E-value=1.7e-18 Score=204.77 Aligned_cols=206 Identities=20% Similarity=0.189 Sum_probs=135.2
Q ss_pred ceEEEEcCCchhHHHHHHHHHHHHh-----------------------------------CCCCCceEeecchHHHHHHH
Q 003105 229 RTALLLSGGASLGAFHVGVVKTLVE-----------------------------------NKLMPRIIAGSSVGSIICSA 273 (847)
Q Consensus 229 rtALVLSGGGarGlyHiGVLKAL~E-----------------------------------~gLlPdIISGTSaGAIVAAl 273 (847)
|.||||.|||++++|..||+|++.+ .++.+++|+|||||||+|++
T Consensus 3 RlalVl~GG~slA~y~~GV~~ei~~l~~~~~~~~~~~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~ 82 (739)
T TIGR03607 3 RLALVMYGGVSLAVYMHGVTKEINRLVRASRAYHGYPDEASAGTEAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVL 82 (739)
T ss_pred eEEEEecCcHHHHHHHHHHHHHHHHHhhhhcccccccccccccchhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHH
Confidence 6899999999999999999999765 26899999999999999999
Q ss_pred Hhc-----CChhhhHHHHHhhhccccccccccchhHHHHHhhcCCccccHHHHHHHHHHhcCCc------cHHHHHhcc-
Q 003105 274 VAT-----RSWPELQSFFEDSWHSLQFFDQLGGIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNL------TFQEAYDMT- 341 (847)
Q Consensus 274 lat-----gt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdl------TFeEAy~rT- 341 (847)
+|+ .+.++|.+++.......++++.... .+....+.+++++++.+.+++++.++++ ||.++..-.
T Consensus 83 lA~~~~~g~~~~~L~~~W~~~~d~~~lLd~~~~---~~~~~~~~~sLl~G~~l~~~L~~~L~~~~~~~~~~~~~lp~~~~ 159 (739)
T TIGR03607 83 LAYALAYGADLDPLRDLWLELADIDALLRPDAK---AWPRLRRPGSLLDGEYFLPLLLDALAAMVRAGPAGPSLLPTGTR 159 (739)
T ss_pred HHcccccCCCHHHHHHHHHhcccHHhhcChhhh---ccccccCCccccccHHHHHHHHHHHHHhCCCCCCCccccccCCC
Confidence 998 3556888865553322223322100 0111234466788889999998877543 677764322
Q ss_pred CCEEEEEEeCCCCCCCCc------------------ccee-----ccCCC------ccHHHHHhhhcCCCCcccceEEee
Q 003105 342 GRILGITVCSPRKHEPPR------------------CLNY-----LTSPH------VVIWSAVTASCAFPGLFEAQELMA 392 (847)
Q Consensus 342 GRiLnItVt~~~~~~~p~------------------LLNY-----lTsPn------VlIwsAV~AS~AiPglF~PV~L~~ 392 (847)
.-.|.||+|+. .+..-. -+.| --.|+ ..+..|++||||+|+.|+||++-.
T Consensus 160 ~~dL~VTaTDl-~G~~~~l~dd~~~~~~e~~hr~~f~F~~~~~~~~~~~d~~~~~~~~lA~AaRaSaSfP~aF~Pv~l~~ 238 (739)
T TIGR03607 160 PLDLFVTATDL-RGRSTRLFDDDGTVVEEREHRGVFRFTEAGRAGGRLSDFDAANAPRLAFAARATASFPGAFPPSRLAE 238 (739)
T ss_pred CccEEEEEEcC-CCcEEEeecCCCcccccccccceeeeecccCCCCCCccccccccHHHHHHHHHhcCCCcccCceehhh
Confidence 34688999887 322110 0123 01111 358999999999999999998732
Q ss_pred cCC--CCCcccCCCCC-----CCCC--CCCCCCCCceeeecccccCchHHHHHHh
Q 003105 393 KDR--SGEIVPYHPPF-----HLGP--EKGSGTAVRRWRDGSLEIDLPMMQLKEL 438 (847)
Q Consensus 393 Kd~--~G~ivPy~pp~-----~l~p--~~gs~~~g~~yvDGGv~~NlPv~rL~EL 438 (847)
-|. +..-+||.-.. .+.+ ..++...+.+|+|||+.+|.|+..+.+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDGGvldN~Pl~pal~~ 293 (739)
T TIGR03607 239 IDDVLARRFLPWGGRDAFLHPDFPDYAELGTTPRPRYVVDGGVLDNRPFAPALEA 293 (739)
T ss_pred hhHHHHhccCCCCccccccccccccccccCCCccceEEeecccccCcchHHHHHH
Confidence 221 22334442111 0111 1221236789999999999999888775
No 38
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.78 E-value=1.6e-17 Score=174.90 Aligned_cols=150 Identities=22% Similarity=0.336 Sum_probs=111.2
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhC-C----C--CCceEeecchHHHHHHHHhcC--ChhhhHHHHHhhhccccccccccc
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVEN-K----L--MPRIIAGSSVGSIICSAVATR--SWPELQSFFEDSWHSLQFFDQLGG 301 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~-g----L--lPdIISGTSaGAIVAAllatg--t~eEL~~~l~~~~~~l~~fd~~~~ 301 (847)
.|+|+|||+||++|+|+|++|+++ + + .+|+|+|||+|||+|++++.+ +.+|+.+++....
T Consensus 1 iLsldGGG~rG~~~~~~L~~le~~~~~~~~~~~~fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~----------- 69 (258)
T cd07199 1 ILSLDGGGIRGIIPAEILAELEKRLGKPSRIADLFDLIAGTSTGGIIALGLALGRYSAEELVELYEELG----------- 69 (258)
T ss_pred CEEECCchHhHHHHHHHHHHHHHHhCCCCchhhccceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHh-----------
Confidence 389999999999999999999997 2 3 289999999999999999997 4557776665411
Q ss_pred hhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccC-----CCccHHHHHh
Q 003105 302 IFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTS-----PHVVIWSAVT 376 (847)
Q Consensus 302 l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTs-----PnVlIwsAV~ 376 (847)
...+. .+.|++++..++++..+-||-.. .++.+|+|++
T Consensus 70 -----~~if~--------------------------------~~~i~a~~~~~~~~~~f~~~~~~~~~~~~~~~l~d~~~ 112 (258)
T cd07199 70 -----RKIFP--------------------------------RVLVTAYDLSTGKPVVFSNYDAEEPDDDDDFKLWDVAR 112 (258)
T ss_pred -----Hhhcc--------------------------------CeEEEEEEcCCCCeEEEECCCCcccCCcCCccHHHHHH
Confidence 00011 46788888887765444455433 4667999999
Q ss_pred hhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHH------hcCCCEEEEEccC
Q 003105 377 ASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKE------LFNVNHFIVSQAN 450 (847)
Q Consensus 377 AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~E------LFnVn~fIVSqvn 450 (847)
||||+|++|+|+++-. ..++..|+|||+.+|+|+..+.. ..+.+.++|+-+.
T Consensus 113 ASsAaP~~f~p~~i~~----------------------~~~~~~~vDGGv~~NnP~~~a~~ea~~~~~~~~~~~~vlSiG 170 (258)
T cd07199 113 ATSAAPTYFPPAVIES----------------------GGDEGAFVDGGVAANNPALLALAEALRLLAPDKDDILVLSLG 170 (258)
T ss_pred HHhcchhccCcEEecc----------------------CCCeeEEecCccccCChHHHHHHHHHHhcCCCCCceEEEEec
Confidence 9999999999999711 01578999999999999865432 2245555555444
No 39
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=99.76 E-value=1.6e-18 Score=170.30 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=101.4
Q ss_pred EEEcCCchhHHHHHHHHHHHHhCCC--CCceEeecchHHHHHHHHhcCChhhhHHHHHhhhccccccccccchhHHHHHh
Q 003105 232 LLLSGGASLGAFHVGVVKTLVENKL--MPRIIAGSSVGSIICSAVATRSWPELQSFFEDSWHSLQFFDQLGGIFSIVRRV 309 (847)
Q Consensus 232 LVLSGGGarGlyHiGVLKAL~E~gL--lPdIISGTSaGAIVAAllatgt~eEL~~~l~~~~~~l~~fd~~~~l~~~l~r~ 309 (847)
|+|+|||+||+||+||+++|+|+++ .+++|+|+|+||++|++++ + +.+
T Consensus 1 l~~~GGg~~~~~~~gvl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~------------p----~~~-------------- 50 (155)
T cd01819 1 LSFSGGGFRGMYHAGVLSALAERGLLDCVTYLAGTSGGAWVAATLY------------P----PSS-------------- 50 (155)
T ss_pred CEEcCcHHHHHHHHHHHHHHHHhCCccCCCEEEEEcHHHHHHHHHh------------C----hhh--------------
Confidence 6899999999999999999999999 9999999999999999999 0 000
Q ss_pred hcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCCCCcccceE
Q 003105 310 MTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQE 389 (847)
Q Consensus 310 l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~AiPglF~PV~ 389 (847)
.++ ....+.+. |. ....+.|++|+..+++...........+ +++|++|||++|++|+|+.
T Consensus 51 -----~~~-~~~~~~~~---------~~---~~~~~~i~~T~~~tG~~~~~~~~~~~~~--~~~av~aS~s~P~~f~~v~ 110 (155)
T cd01819 51 -----SLD-NKPRQSLE---------EA---LSGKLWVSFTPVTAGENVLVSRFVSKEE--LIRALFASGSWPSYFGLIP 110 (155)
T ss_pred -----hhh-hhhhhhhH---------Hh---cCCCeEEEEEEcCCCcEEEEeccccchH--HHHHHhHHhhhhhhcCCcc
Confidence 000 00011111 11 2345778888988876321111133333 6899999999999999876
Q ss_pred EeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHHHh-cCCCEEE
Q 003105 390 LMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLKEL-FNVNHFI 445 (847)
Q Consensus 390 L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~EL-FnVn~fI 445 (847)
+-.+..+... ...++.+|+|||+.+|+|+..+.+. .+++.+|
T Consensus 111 ~~~~~~~~~~--------------~~~~g~~lVDGG~~~~iP~~~~~~~~r~~~vii 153 (155)
T cd01819 111 PAELYTSKSN--------------LKEKGVRLVDGGVSNNLPAPVLLRPGRGVTLTI 153 (155)
T ss_pred cccccccccc--------------cccCCeEEeccceecCcCCcccccCCCCCeEEe
Confidence 5222210000 0137899999999999999865333 1666444
No 40
>COG3621 Patatin [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=153.12 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=127.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHh-CCC----CCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhcccccccc-cc--
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVE-NKL----MPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQ-LG-- 300 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E-~gL----lPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~-~~-- 300 (847)
..|.|.|||++|..|+-+++.+++ +|- .+|+|+|||+|+|+++.++.+ ++.|++++|....... |+.. ..
T Consensus 10 rIlsldGGGvrG~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks~~e~~qlF~~q~~q~-f~ee~~~~~ 88 (394)
T COG3621 10 RILSLDGGGVRGAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKSPRELKQLFSAQQAQI-FPEEMKHRI 88 (394)
T ss_pred eEEEecCCccccHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCCCchHHHHHHHhhhhh-ccHhhccCC
Confidence 568999999999999999999999 554 479999999999999999998 6679999988632111 1111 01
Q ss_pred ---chhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccc----eec--cCCCccH
Q 003105 301 ---GIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCL----NYL--TSPHVVI 371 (847)
Q Consensus 301 ---~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LL----NYl--TsPnVlI 371 (847)
+-|+...++--.++.++.+.|.+.++.+.+|.||.+. -||++.+.+ +....+.|... +-. ...|..+
T Consensus 89 fpv~tFrq~l~~a~~~pkys~~pLiK~lk~~~~D~tlkDL---~~~Vvv~~~-~l~~~knp~~t~~~~~~~~~ry~~~~L 164 (394)
T COG3621 89 FPVGTFRQLLSYALFSPKYSPQPLIKLLKFVCKDYTLKDL---IGRVVVPGY-DLNNQKNPLFTFSTHHARPSRYNNYKL 164 (394)
T ss_pred CcchhHhhhhhhhhcCCcCCchhHHHHHHHhccccchhhh---ccceEEEee-ecccccCCceeecccCccccccccchH
Confidence 1122221221245678889999999999999999986 366654443 44444333221 100 1346679
Q ss_pred HHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHHHH
Q 003105 372 WSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQLK 436 (847)
Q Consensus 372 wsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~rL~ 436 (847)
|+++.||+|.|++|+|... .|-+. ..-+.++||||++|.|.....
T Consensus 165 sDii~~stAAPtyFp~h~~--~~i~~------------------~k~~~~iDGGv~ANnPsla~~ 209 (394)
T COG3621 165 SDIILASTAAPTYFPPHHF--ENITN------------------TKYHPIIDGGVVANNPSLATW 209 (394)
T ss_pred HHHHHhcccCCcccCcccc--ccccc------------------ccceeeecceeeecChhHHHH
Confidence 9999999999999999876 11111 134678999999999986533
No 41
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.38 E-value=8.7e-13 Score=147.74 Aligned_cols=175 Identities=18% Similarity=0.274 Sum_probs=122.2
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhCC-----CCCceEeecchHHHHHHHHhcC--ChhhhHHHHHhhhcccccccccc
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVENK-----LMPRIIAGSSVGSIICSAVATR--SWPELQSFFEDSWHSLQFFDQLG 300 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~g-----LlPdIISGTSaGAIVAAllatg--t~eEL~~~l~~~~~~l~~fd~~~ 300 (847)
|-..|.+.|||+||+..+-+||.+++-- -++|+|||+|+|+|+|++++.. +.+|.++++.+... ..|.+
T Consensus 416 G~rILSiDGGGtrG~~~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k~m~l~eCeEiY~~lgk--~vFsq-- 491 (763)
T KOG4231|consen 416 GLRILSIDGGGTRGLATLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVKLMTLEECEEIYKNLGK--LVFSQ-- 491 (763)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhcCccHHHHHHHHHHHhH--HHhhc--
Confidence 4578999999999999999999999852 2679999999999999999995 67899999876221 11211
Q ss_pred chh-HHHHHhhcCCccccHHHHHHHHHHhcCC-ccH-HHHHhccCCEEEEEEeCCC---CCCCCccceeccC--------
Q 003105 301 GIF-SIVRRVMTQGAVHDIRQLQWMLRHLTSN-LTF-QEAYDMTGRILGITVCSPR---KHEPPRCLNYLTS-------- 366 (847)
Q Consensus 301 ~l~-~~l~r~l~~G~l~D~~~L~~~Lr~~lGd-lTF-eEAy~rTGRiLnItVt~~~---~~~~p~LLNYlTs-------- 366 (847)
+.+ ......|.+ .+++...|++.+++..|. .++ .++-..+-..+.|+-|-.+ +-++..+-||-.-
T Consensus 492 ~v~~g~~~~sw~H-s~y~~n~we~iLKem~ged~~mi~tsr~~~~PkvavVStiVn~~pT~qpfIFRNY~hp~G~~Shy~ 570 (763)
T KOG4231|consen 492 SVPKGNEAASWIH-SKYSANEWERILKEMCGEDGDMIITSRVKNVPKVAVVSTIVNVMPTAQPFIFRNYQHPVGTQSHYM 570 (763)
T ss_pred cccccchhheehh-hhcchHHHHHHHHHHhhhhhhHHHhhccCCCCceeehhhhhhcCCCccceeeeccCCCCCcchhhc
Confidence 000 011122334 678889999999998873 433 3343333334444433222 2233334455432
Q ss_pred --CCccHHHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHH
Q 003105 367 --PHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMM 433 (847)
Q Consensus 367 --PnVlIwsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~ 433 (847)
-.-.+|+|++||+|.|++|.-+.+ +...|.|||+..|+|..
T Consensus 571 Ggc~h~~WqAIrASsAAP~Yf~e~~l--------------------------gn~l~QDGgi~aNNPta 613 (763)
T KOG4231|consen 571 GGCKHQVWQAIRASSAAPYYFDEFSL--------------------------GNYLWQDGGIVANNPTA 613 (763)
T ss_pred ccchHHHHHHHHhcccCCcchhhhcc--------------------------ccceeccCcEeecCccH
Confidence 223599999999999999999887 56789999999999964
No 42
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.6e-09 Score=117.70 Aligned_cols=165 Identities=24% Similarity=0.307 Sum_probs=110.7
Q ss_pred cCceEEEEcCCchhHHHHHHHHHHHHhC--CCCCce-EeecchHHHHHHHHhcC-ChhhhHHHHHhhhccccccccccch
Q 003105 227 FGRTALLLSGGASLGAFHVGVVKTLVEN--KLMPRI-IAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQLGGI 302 (847)
Q Consensus 227 ~GrtALVLSGGGarGlyHiGVLKAL~E~--gLlPdI-ISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~~~~l 302 (847)
.+|.+|+|+|-|..|+||+|+.++|.++ .++-+. |.|+|+|+++|+.+.++ .-++..+.+-. ..+..
T Consensus 4 ~~r~~lSfsg~gFlg~yh~gaa~~l~~~ap~ll~~~~~~GaSagsl~a~~ll~~~~l~~a~~~l~~------~v~e~--- 74 (354)
T KOG3773|consen 4 VERMNLSFSGCGFLGIYHVGAANCLPRHAPRLLKDRSIAGASAGSLVACDLLCGLSLEEATGELYK------MVDEA--- 74 (354)
T ss_pred hhhhheeecCCceeEEEecchHHHHHHHHHHHhccccccCcccchHHHhhhhccccHHHHHHHHHH------HHHHH---
Confidence 3578999999999999999999999887 355566 99999999999988887 43333222111 00000
Q ss_pred hHHHHHh-hcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCCCccHHHHHhhhcCC
Q 003105 303 FSIVRRV-MTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAF 381 (847)
Q Consensus 303 ~~~l~r~-l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsPnVlIwsAV~AS~Ai 381 (847)
..+.+ ..+.++.+.+.|...++..+.+--.++| +|| +.|++|...+++..-..+|-+.-+ +.+|+.|||-+
T Consensus 75 --~~~s~g~~tP~f~~~~~l~~~le~~LPpda~~la---~~r-l~iSlTr~~~~~N~lis~F~s~~~--liq~L~~scyi 146 (354)
T KOG3773|consen 75 --RRKSLGAFTPGFNLSDRLRSGLEDFLPPDAHWLA---SGR-LHISLTRVKDRENVLISEFPSRDE--LIQALMCSCYI 146 (354)
T ss_pred --HHhhcCCCCCCcCHHHHHHHHHHHhCChHHHHHh---hcc-eeEEEEeeeehhhhhhhccccHHH--HHHHHHHhccC
Confidence 00000 1133455567788888887765433333 555 789999887775433333434444 67999999999
Q ss_pred CCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchH
Q 003105 382 PGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPM 432 (847)
Q Consensus 382 PglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv 432 (847)
|.+-.-+ || ...|..|+|||+.+|+|.
T Consensus 147 P~ysg~~---------------pp---------~~rg~~yiDGg~snnlP~ 173 (354)
T KOG3773|consen 147 PMYSGLK---------------PP---------IFRGVRYIDGGTSNNLPE 173 (354)
T ss_pred ccccCCC---------------Cc---------ceeeEEEecccccccccc
Confidence 9865411 11 027899999999999997
No 43
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=98.03 E-value=5.3e-06 Score=94.92 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=45.9
Q ss_pred ccCceEEEEcCCchhH-HHHHHHHHHHHhCCCC--CceEeecchHH-HHHHHHhcC
Q 003105 226 AFGRTALLLSGGASLG-AFHVGVVKTLVENKLM--PRIIAGSSVGS-IICSAVATR 277 (847)
Q Consensus 226 s~GrtALVLSGGGarG-lyHiGVLKAL~E~gLl--PdIISGTSaGA-IVAAllatg 277 (847)
...++||++||||.|+ ++|+||++||.+.||+ +++|+|.|+|+ +++++++..
T Consensus 40 ~~p~i~~~~sGGG~Ra~~~~~G~l~~l~~~gll~~~~yisg~Sgg~w~~~~~~~~~ 95 (438)
T cd00147 40 EVPVIAILGSGGGYRAMTGGAGALKALDEGGLLDCVTYLSGLSGSTWLMASLYSNP 95 (438)
T ss_pred cCceEEEEecCchHHHHHhhhHHHHHHHhCCchhccceeeeccchHHHHHHHHHcC
Confidence 4468999999999999 5799999999999999 89999999999 566666655
No 44
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=96.39 E-value=0.0036 Score=71.57 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=43.5
Q ss_pred ccCceEEEEcCCchhHH-HHHHHHHHHHhCCCCC--ceEeecchHHHH-HHHHhc
Q 003105 226 AFGRTALLLSGGASLGA-FHVGVVKTLVENKLMP--RIIAGSSVGSII-CSAVAT 276 (847)
Q Consensus 226 s~GrtALVLSGGGarGl-yHiGVLKAL~E~gLlP--dIISGTSaGAIV-AAllat 276 (847)
.-.++||++||||.|.| +++|++++|.+.||+- .+|+|.|.|+-. ++++.-
T Consensus 37 ~~P~i~ia~SGGG~RAm~~~~G~l~al~~~GLl~~~tY~sglSGgsWl~~sLy~n 91 (430)
T cd07202 37 KAPVIAVLGSGGGLRAMIACLGVLSELDKAGLLDCVTYLAGVSGSTWCMSSLYTE 91 (430)
T ss_pred cCCeEEEEecCccHHHHHhccHHHHHhhhCChhhhhhhhccccchHHHHHHHHhc
Confidence 34789999999999997 5999999999999975 679999999966 555554
No 45
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=95.42 E-value=0.015 Score=68.06 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred ccCceEEEEcCCchhHHH-HHHHHHHHHhCCCC--CceEeecchHHH-HHHHHhc
Q 003105 226 AFGRTALLLSGGASLGAF-HVGVVKTLVENKLM--PRIIAGSSVGSI-ICSAVAT 276 (847)
Q Consensus 226 s~GrtALVLSGGGarGly-HiGVLKAL~E~gLl--PdIISGTSaGAI-VAAllat 276 (847)
.-+++|++.||||.|.|. -.|+++||.+.||+ -.+|+|-|.|+= +++++.-
T Consensus 42 ~~P~Iaia~SGGGyRAMl~gaG~l~Ald~gGLLq~aTYlaGLSGgsWlvgsl~~n 96 (505)
T cd07200 42 EVPVIALLGSGGGFRAMVGMSGAMKALYDSGVLDCATYVAGLSGSTWYMSTLYSH 96 (505)
T ss_pred cCCeEEEEecCccHHHHhhccHHHHhhhcCChhhhhhhhhcCCccHHHHHHHHhC
Confidence 457899999999999985 79999999999998 467999999995 6666654
No 46
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=94.69 E-value=0.039 Score=65.18 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHH-HhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchhHHH-HHHHHHHHHhC-------CC
Q 003105 186 PKLIKEYIDEVSTQLR-MVCDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASLGAF-HVGVVKTLVEN-------KL 256 (847)
Q Consensus 186 K~LIEeYI~EV~~~L~-~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarGly-HiGVLKAL~E~-------gL 256 (847)
+.-++.=..-|.++|+ +|.... ..++..+-+ ...-+++|++.||||.|.|. -.|||.||.|+ ||
T Consensus 12 q~fl~kRk~~v~~AL~~fL~~~~-~~l~~~~~~------~~d~P~vaIa~SGGG~RAMl~g~G~Laamder~~~~~l~GL 84 (571)
T KOG1325|consen 12 QEFLEKRKSKVNEALKSFLSNTT-LNLDSDSLV------SSDGPVVGIAGSGGGLRAMLSGAGALAAMDERTDNAGLGGL 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccccccccc------cCCCCeEEEEecCCCHHHHhhhhHHHHHHHhhccCCcccch
Confidence 3344544555666665 332111 123322222 44678999999999999996 58999999999 99
Q ss_pred C--CceEeecchHHHHHHHHhcCCh
Q 003105 257 M--PRIIAGSSVGSIICSAVATRSW 279 (847)
Q Consensus 257 l--PdIISGTSaGAIVAAllatgt~ 279 (847)
+ -.+|+|.|.|+=.-+-++....
T Consensus 85 Lqs~tYlaGlSGstW~vssLa~nn~ 109 (571)
T KOG1325|consen 85 LQSATYLAGLSGGSWLVSSLAVNNF 109 (571)
T ss_pred hhhhhhhcccCCCceeeeeeEECCc
Confidence 8 4789999999976666665543
No 47
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=94.67 E-value=0.048 Score=64.70 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=48.8
Q ss_pred ccCceEEEEcCCchhHHH-HHHHHHHHHh-------CCCCC--ceEeecchHHHHHHHHhcCChhhhHH
Q 003105 226 AFGRTALLLSGGASLGAF-HVGVVKTLVE-------NKLMP--RIIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 226 s~GrtALVLSGGGarGly-HiGVLKAL~E-------~gLlP--dIISGTSaGAIVAAllatgt~eEL~~ 284 (847)
...++|+++||||.|.|. ..|+|+||.+ .||+- .+|+|-|.|+-.-+.++.....-+..
T Consensus 74 ~~P~Igia~SGGGyRAml~gaG~l~ald~R~~~~~lgGLLq~~tYlaGlSGgsWlv~sl~~nnf~sv~~ 142 (549)
T smart00022 74 DVPVIAIAGSGGGFRAMVGGAGVLKAMDNRTDGHGLGGLLQSATYLAGLSGGTWLVGTLASNNFTPVKG 142 (549)
T ss_pred cCceEEEEecCCCHHHHHhccHHHHHhhhcccccccccHhhhhhhhhccchHHHHHHHHhhCCCchhhh
Confidence 458899999999999985 8999999999 58874 67999999999888877765543433
No 48
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3.1.1.5 from EC and cytosolic phospholipase A2 which also has a C2 domain IPR000008 from INTERPRO. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capable in vitro of hydrolyzing all phospholipids extractable from yeast cells []. Cytosolic phospholipase A2 associates with natural membranes in response to physiological increases in Ca2+ and selectively hydrolyses arachidonyl phospholipids [], the aligned region corresponds the carboxy-terminal Ca2+-independent catalytic domain of the protein as discussed in [].; GO: 0004620 phospholipase activity, 0009395 phospholipid catabolic process; PDB: 1CJY_B.
Probab=93.69 E-value=0.062 Score=63.10 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=35.0
Q ss_pred eEEEEcCCchhHH-HHHHHHHHHH--------hCCCC--CceEeecchHHHHHHHHhcC
Q 003105 230 TALLLSGGASLGA-FHVGVVKTLV--------ENKLM--PRIIAGSSVGSIICSAVATR 277 (847)
Q Consensus 230 tALVLSGGGarGl-yHiGVLKAL~--------E~gLl--PdIISGTSaGAIVAAllatg 277 (847)
+||++||||.|+| +-+|+|.||. ..||+ ..+|+|-|.|+-.-+.++..
T Consensus 1 Iaia~SGGG~RAml~gaG~l~Ald~R~~~~~~~gGLLq~~tY~sGlSGgsW~~~sl~~~ 59 (491)
T PF01735_consen 1 IAIAGSGGGYRAMLAGAGVLSALDSRNPGANGTGGLLQCATYISGLSGGSWLVGSLYSN 59 (491)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHH--------HCS-GGGECEEEE-HHHHHHHHHH---
T ss_pred CeEEecCchHHHHHHHHHHHHHhhhhccccccccchhhhhhhhhhcCcchhhhhhhhhc
Confidence 6899999999998 5899999999 89997 47899999999866666554
No 49
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=93.38 E-value=0.094 Score=61.85 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=43.8
Q ss_pred ccCceEEEEcCCchhHHH-HHHHHHHHHhCCCCC--ceEeecchHHHH-HHHHhc
Q 003105 226 AFGRTALLLSGGASLGAF-HVGVVKTLVENKLMP--RIIAGSSVGSII-CSAVAT 276 (847)
Q Consensus 226 s~GrtALVLSGGGarGly-HiGVLKAL~E~gLlP--dIISGTSaGAIV-AAllat 276 (847)
.-+++|+++||||.|.|. ..|+++||.+.||+- .+|+|.|.|+=. +++|.-
T Consensus 51 ~~P~Igia~SGGGyRAml~gaG~l~al~~~GLLq~~tYlaGlSGg~Wl~gSLy~n 105 (541)
T cd07201 51 EVPVVAVMTTGGGTRALTSMYGSLLGLQKLGLLDCVSYITGLSGSTWTMATLYED 105 (541)
T ss_pred cCCeEEEEecCccHHHHHhccHHHHhhhcCCchhhhheecccCccHHHHHHHHcC
Confidence 457899999999999985 899999999999974 679999999987 555554
No 50
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=93.17 E-value=0.18 Score=59.49 Aligned_cols=175 Identities=21% Similarity=0.236 Sum_probs=96.8
Q ss_pred hccCceEEEEcCCchhHHHHHHHHHHHHhC-C-C---CCceEeecchHHHHHHHHhcC-ChhhhHHHHHhhhcccccccc
Q 003105 225 HAFGRTALLLSGGASLGAFHVGVVKTLVEN-K-L---MPRIIAGSSVGSIICSAVATR-SWPELQSFFEDSWHSLQFFDQ 298 (847)
Q Consensus 225 ~s~GrtALVLSGGGarGlyHiGVLKAL~E~-g-L---lPdIISGTSaGAIVAAllatg-t~eEL~~~l~~~~~~l~~fd~ 298 (847)
..+.+-.+..-|||.+ -+=|+...++. | - .++.+.|||.|+++++-+... ..+++...+.... ...|+.
T Consensus 290 ~~~~~~lv~~~G~G~~---~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~~s~d~v~~~y~~~k--~~~F~~ 364 (503)
T KOG0513|consen 290 LRVDDNLVLSDGGGIP---IIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALDGSSDEVDRMYLQMK--DVVFDG 364 (503)
T ss_pred ccccceEEEecCCCCh---hHHHHHhHHHhcccccccccccccccCcCceeehhhhhcccHHHHHHHHHHHh--HHhhhc
Confidence 3355677888899988 34444444443 1 1 367799999999988888775 6666664432210 011111
Q ss_pred -c--c---chhHHHHHhhcCCccccHHHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCCCCCCCccceeccCC-CccH
Q 003105 299 -L--G---GIFSIVRRVMTQGAVHDIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSP-HVVI 371 (847)
Q Consensus 299 -~--~---~l~~~l~r~l~~G~l~D~~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~~~~~p~LLNYlTsP-nVlI 371 (847)
+ . .+...+.+.++.....|+..+.-.+.....+.+-++.+.......+|.+.-. ..+......-+..| ..++
T Consensus 365 ~r~~~~~~~Ie~~~~~~~G~~~~~di~~~~~nl~~~~~~~~~~~l~~~rn~~~~i~~~~~-~~~~~snde~~~~~~~~l~ 443 (503)
T KOG0513|consen 365 LRSEYNYVRIECAIDRLFGDAPSMDIDGIRLNLTGLLVDITGEELLMARNYRHNINGGKP-RSEEVSNDEALEEPAMQLV 443 (503)
T ss_pred ccCCCCccchhhhhhcccCccccccCCcchhhhhhhhccccHHHHHHhhccccccccccc-cccccccchhhhhHHHHHH
Confidence 0 0 1111223334445566666666666666666665554333222223322110 00000000111222 2369
Q ss_pred HHHHhhhcCCCCcccceEEeecCCCCCcccCCCCCCCCCCCCCCCCCceeeecccccCchHHH
Q 003105 372 WSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWRDGSLEIDLPMMQ 434 (847)
Q Consensus 372 wsAV~AS~AiPglF~PV~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yvDGGv~~NlPv~r 434 (847)
|.+-+.|++.|..|+|.. .++.|||...|.|.-.
T Consensus 444 we~~rrss~a~~~f~~~~-----------------------------~~~~d~~~~~~n~~ld 477 (503)
T KOG0513|consen 444 WEAKRRSSRAPPTFPPSE-----------------------------GKFIDGGLIANNPALD 477 (503)
T ss_pred HHHHHhccCCCCcccccc-----------------------------cceeecCccCCCcchh
Confidence 999999999998887643 4789999999999633
No 51
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=91.85 E-value=0.28 Score=58.33 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=48.2
Q ss_pred ccCceEEEEcCCchhHHH-HHHHHHHHHhC----------CCC--CceEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 226 AFGRTALLLSGGASLGAF-HVGVVKTLVEN----------KLM--PRIIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 226 s~GrtALVLSGGGarGly-HiGVLKAL~E~----------gLl--PdIISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
...++||++||||.|.|. -+|+|+||..+ ||+ -.+|+|-|.|+=.-+-++......+.+++
T Consensus 61 ~~P~Igia~SGGGyRAMl~GaG~l~AlD~Rt~~~~~~glgGLLQsatYlaGLSGGsWlvgSl~~Nnf~sv~~l~ 134 (552)
T cd07203 61 NGPRIGIAVSGGGYRAMLTGAGAIAAMDNRTDNATEHGLGGLLQSSTYLSGLSGGSWLVGSLASNNFTSVQDLL 134 (552)
T ss_pred cCCeEEEEecCccHHHHHhccHHHHhhhcccccccccccccHHHHhhHhhhcCccchhhhhhhhCCCCCHHHHh
Confidence 458899999999999985 79999999753 666 46799999999877777766555444444
No 52
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=81.89 E-value=2.1 Score=50.83 Aligned_cols=188 Identities=18% Similarity=0.178 Sum_probs=97.1
Q ss_pred CceEEEEcCCchhHHHHHHHHHHHHhC-------------CCCCce-EeecchHHHHHHHHhcCCh--------hhh-HH
Q 003105 228 GRTALLLSGGASLGAFHVGVVKTLVEN-------------KLMPRI-IAGSSVGSIICSAVATRSW--------PEL-QS 284 (847)
Q Consensus 228 GrtALVLSGGGarGlyHiGVLKAL~E~-------------gLlPdI-ISGTSaGAIVAAllatgt~--------eEL-~~ 284 (847)
.-+-|.|.|||.+|+++.=..+.++.+ -..+|+ ++|+++|.+++|++=...+ .++ ..
T Consensus 34 ~~~~lsld~gg~~gi~~~~s~~~~~~~l~~~~g~~~~~~~a~~fDv~~~g~~~~gl~~aml~a~~~~~~P~~~a~~~~~~ 113 (503)
T KOG0513|consen 34 LVTILSLDGGGSRGINQGVSLAYLELRLQNIDGDPSAARLADYFDVSIAGTNTGGLITAMLFAPNDCGRPRFGATDILWK 113 (503)
T ss_pred cceEEEEcCccceehhhhhhhcccHHHHHhccCChHhhHhhhccCceeeccCCchhhhhhhhccccccCccccccchhhh
Confidence 447899999999999986555554432 135899 9999999999999865422 133 23
Q ss_pred HHHhhhcc-ccccc-c---ccchhHHHHHhhcCCccccH------HHHHHHHHHhcCCccHHHHHhccCCEEEEEEeCCC
Q 003105 285 FFEDSWHS-LQFFD-Q---LGGIFSIVRRVMTQGAVHDI------RQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPR 353 (847)
Q Consensus 285 ~l~~~~~~-l~~fd-~---~~~l~~~l~r~l~~G~l~D~------~~L~~~Lr~~lGdlTFeEAy~rTGRiLnItVt~~~ 353 (847)
+..+.... +.-++ . .+++...+.... .+.-++. .......++..|+.+...+...-+....|.+-...
T Consensus 114 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~~~~i~~ldl~ 192 (503)
T KOG0513|consen 114 FNLEKAPKLLEKFDDPNFIKGDLNLALRILV-SGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENLLVVIPCLDLK 192 (503)
T ss_pred hhhcCCCccccccccccccccccccceeeee-cCccccceeecccccccchhhhhcCCceeeeeccCCCcceEEEeeccC
Confidence 32221110 10111 0 011111111111 1111111 22334445567777666554332222334444444
Q ss_pred CCCCCccc-eeccCCC-------ccHHHHHhhh--cCCCCcccce-EEeecCCCCCcccCCCCCCCCCCCCCCCCCceee
Q 003105 354 KHEPPRCL-NYLTSPH-------VVIWSAVTAS--CAFPGLFEAQ-ELMAKDRSGEIVPYHPPFHLGPEKGSGTAVRRWR 422 (847)
Q Consensus 354 ~~~~p~LL-NYlTsPn-------VlIwsAV~AS--~AiPglF~PV-~L~~Kd~~G~ivPy~pp~~l~p~~gs~~~g~~yv 422 (847)
. ..|.++ -|.+.+. ...+..+.+- ++-|.+|+|. .+ +..+|.-. ..-..++
T Consensus 193 ~-~~P~lf~~~~~~~~~~v~~~~~~~~~~c~~t~~sa~~~~f~~~~~~--~~~Dg~~~---------------~~~~~~~ 254 (503)
T KOG0513|consen 193 S-LTPNLFSIYDALGTKIVPLLDFKAIDICIDTYGSAAPTIFPPILGF--PSEDGQGI---------------KTVCVLL 254 (503)
T ss_pred c-CCceeeeeeccccccchhhhhhhhhhhhhccccccCccccCccccc--cccccccc---------------ceeeEEe
Confidence 4 445443 2333333 2345566666 7889999994 43 33333110 0224568
Q ss_pred ecc-cccCchHHH
Q 003105 423 DGS-LEIDLPMMQ 434 (847)
Q Consensus 423 DGG-v~~NlPv~r 434 (847)
||| +..+.|-..
T Consensus 255 ~~g~~~m~n~t~~ 267 (503)
T KOG0513|consen 255 DGGDIAMNNPTLH 267 (503)
T ss_pred cchhhhccCchHh
Confidence 999 888888643
No 53
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=81.27 E-value=7.1 Score=38.61 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=25.4
Q ss_pred eEEEEcCCchhHHH----HHHHHHHHHh---CCCCCceEeecchHHHHH
Q 003105 230 TALLLSGGASLGAF----HVGVVKTLVE---NKLMPRIIAGSSVGSIIC 271 (847)
Q Consensus 230 tALVLSGGGarGly----HiGVLKAL~E---~gLlPdIISGTSaGAIVA 271 (847)
.++.++||-.+=+. ..|+.++|.+ +| -+|+|+||||+|.
T Consensus 37 d~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G---~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 37 DAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG---GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT---SEEEEETHHHHCT
T ss_pred CEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC---CEEEEEChHHhhc
Confidence 78999999877543 3454444444 56 5899999999884
No 54
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=80.05 E-value=5.1 Score=43.07 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchhHHHH----HHHHHHH---HhCCCCCce
Q 003105 188 LIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASLGAFH----VGVVKTL---VENKLMPRI 260 (847)
Q Consensus 188 LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarGlyH----iGVLKAL---~E~gLlPdI 260 (847)
--++|+++..+.++-+.-. ...+... -++..... .-.++.++||-.+=+.+ .|..+.| .++| -+
T Consensus 45 ~~~~y~~~~~~af~~lG~~-v~~l~~~--~d~~~~l~---~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G---~~ 115 (233)
T PRK05282 45 SWDDYTAKVAEALAPLGIE-VTGIHRV--ADPVAAIE---NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNG---TP 115 (233)
T ss_pred CHHHHHHHHHHHHHHCCCE-EEEeccc--hhhHHHHh---cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCC---CE
Confidence 3567888877777654210 0111110 11111122 23588899998775543 3444444 3455 46
Q ss_pred EeecchHHHHHHHHhc
Q 003105 261 IAGSSVGSIICSAVAT 276 (847)
Q Consensus 261 ISGTSaGAIVAAllat 276 (847)
++|+||||++++--..
T Consensus 116 ~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 116 YIGWSAGANVAGPTIR 131 (233)
T ss_pred EEEECHHHHhhhccce
Confidence 9999999999766444
No 55
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=76.98 E-value=4.7 Score=43.30 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHHH
Q 003105 241 GAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFFE 287 (847)
Q Consensus 241 GlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l~ 287 (847)
-++.++..+.|.+.|+.|+.+.|.|.|-+.|+.++-- +.++..++..
T Consensus 66 ~~~~~a~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~ 113 (298)
T smart00827 66 FAVQVALARLWRSWGVRPDAVVGHSLGEIAAAYVAGVLSLEDAARLVA 113 (298)
T ss_pred HHHHHHHHHHHHHcCCcccEEEecCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457888888999999999999999999888766543 5556555443
No 56
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=73.31 E-value=8.8 Score=40.40 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=30.4
Q ss_pred eEEEEcCCchhHHHH----HHH---HHHHHhCCCCCceEeecchHHHHHHHH
Q 003105 230 TALLLSGGASLGAFH----VGV---VKTLVENKLMPRIIAGSSVGSIICSAV 274 (847)
Q Consensus 230 tALVLSGGGarGlyH----iGV---LKAL~E~gLlPdIISGTSaGAIVAAll 274 (847)
.++.++||-.+=+.+ -|+ |+...++|. +|+|+||||++.+-.
T Consensus 85 d~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~---v~~G~SAGA~i~~~~ 133 (217)
T cd03145 85 DGIFFTGGDQLRITSALGGTPLLDALRKVYRGGV---VIGGTSAGAAVMSDT 133 (217)
T ss_pred CEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCC---EEEEccHHHHhhhhc
Confidence 789999998876554 234 444445553 799999999998754
No 57
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=72.15 E-value=8.2 Score=41.75 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhHHHH
Q 003105 239 SLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQSFF 286 (847)
Q Consensus 239 arGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~~~l 286 (847)
+.-+..++..+.|.+.|+.|+.+.|.|.|-+.|+.++.- +.++..++.
T Consensus 58 ~i~~~q~al~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~~s~e~a~~lv 106 (295)
T TIGR03131 58 CILAAGVAAWRALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLV 106 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEeecCHHHHHHHHHhCCCCHHHHHHHH
Confidence 345678888899999999999999999999888876654 556665543
No 58
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=72.04 E-value=6.1 Score=43.44 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC--ChhhhHHHHH
Q 003105 242 AFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR--SWPELQSFFE 287 (847)
Q Consensus 242 lyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg--t~eEL~~~l~ 287 (847)
++.++..+.|.+.|+.|+++.|.|.|-+.|+ +|++ +.++...++.
T Consensus 69 ~~~~al~~~l~~~Gi~P~~v~GhSlGE~aA~-~aaG~ls~e~a~~lv~ 115 (318)
T PF00698_consen 69 AIQVALARLLRSWGIKPDAVIGHSLGEYAAL-VAAGALSLEDALRLVY 115 (318)
T ss_dssp HHHHHHHHHHHHTTHCESEEEESTTHHHHHH-HHTTSSSHHHHHHHHH
T ss_pred hhhhhhhhhhcccccccceeeccchhhHHHH-HHCCccchhhhhhhHH
Confidence 3578888999999999999999999998766 5555 5566555543
No 59
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=70.54 E-value=8.4 Score=41.14 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCC-CCCceEeecchHHHHHHHHhcC-ChhhhHHHHH
Q 003105 241 GAFHVGVVKTLVENK-LMPRIIAGSSVGSIICSAVATR-SWPELQSFFE 287 (847)
Q Consensus 241 GlyHiGVLKAL~E~g-LlPdIISGTSaGAIVAAllatg-t~eEL~~~l~ 287 (847)
-++.++..+.|.+.| +.|+.+.|.|.|-+.|+.++-- +.++..+++.
T Consensus 66 ~~~~~al~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~ls~eda~~lv~ 114 (290)
T TIGR00128 66 YVVSAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVK 114 (290)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEeecCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345678888888888 9999999999999766655543 5566555543
No 60
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=68.45 E-value=11 Score=39.16 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=30.6
Q ss_pred eEEEEcCCchhHHHHH----HHHHHHHhCCCCCceEeecchHHHHHHHH
Q 003105 230 TALLLSGGASLGAFHV----GVVKTLVENKLMPRIIAGSSVGSIICSAV 274 (847)
Q Consensus 230 tALVLSGGGarGlyHi----GVLKAL~E~gLlPdIISGTSaGAIVAAll 274 (847)
.++.++||-.+=+.+. +.+++|.+.=..=-+++|+||||++.+-.
T Consensus 82 d~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 82 DGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred CEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 7899999987765433 34444433211224899999999999876
No 61
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=68.38 E-value=11 Score=40.89 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=29.9
Q ss_pred ceEEEEcCCchhHHHH----HHHHHHHHhCCCCCceEeecchHHHHHHH
Q 003105 229 RTALLLSGGASLGAFH----VGVVKTLVENKLMPRIIAGSSVGSIICSA 273 (847)
Q Consensus 229 rtALVLSGGGarGlyH----iGVLKAL~E~gLlPdIISGTSaGAIVAAl 273 (847)
-.++.++||=.+=+.+ .++.++|.+.-..=-+|+|+||||+|.+-
T Consensus 83 ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 83 ATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred CCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 3789999999765442 35555554431112689999999998743
No 62
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=59.97 E-value=9.4 Score=39.93 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHh--hcCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchhHH----HHHHHHHHHHh---CCCCC
Q 003105 188 LIKEYIDEVSTQLRMV--CDSDSEELSLEERLAFMHETRHAFGRTALLLSGGASLGA----FHVGVVKTLVE---NKLMP 258 (847)
Q Consensus 188 LIEeYI~EV~~~L~~l--~~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarGl----yHiGVLKAL~E---~gLlP 258 (847)
.-++|+..+..+++.+ ++. ..++...+-++....+ .-.++.|.||-.+-+ -..|..+.|.+ +|
T Consensus 43 ~~~~~~~~~~~a~~~l~G~~~--~~~~~~~~~~~~~~l~---~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g--- 114 (212)
T cd03146 43 DRDEYTARFYAAFESLRGVEV--SHLHLFDTEDPLDALL---EADVIYVGGGNTFNLLAQWREHGLDAILKAALERG--- 114 (212)
T ss_pred CHHHHHHHHHHHHhhccCcEE--EEEeccCcccHHHHHh---cCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCC---
Confidence 4568888888888776 321 1111110111122222 237899999755432 22344444443 34
Q ss_pred ceEeecchHHHHHHH
Q 003105 259 RIIAGSSVGSIICSA 273 (847)
Q Consensus 259 dIISGTSaGAIVAAl 273 (847)
.++.|+|+||++.+-
T Consensus 115 ~~i~G~SAGa~i~~~ 129 (212)
T cd03146 115 VVYIGWSAGSNCWFP 129 (212)
T ss_pred CEEEEECHhHHhhCC
Confidence 579999999998765
No 63
>cd02252 nylC_like nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucl
Probab=51.46 E-value=16 Score=40.08 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=27.2
Q ss_pred ceEEEEcCCchhH-HHHHHHHHHHHhCCCCCc
Q 003105 229 RTALLLSGGASLG-AFHVGVVKTLVENKLMPR 259 (847)
Q Consensus 229 rtALVLSGGGarG-lyHiGVLKAL~E~gLlPd 259 (847)
--|++|+||.++| .++-||++.|+|+|+-++
T Consensus 58 v~aIvLtggsa~GL~aa~gv~~~l~e~g~g~~ 89 (260)
T cd02252 58 VHAIVLSGGSAFGLAAADGVMRALEERGVGFP 89 (260)
T ss_pred ccEEEEeCCchhhHHHHHHHHHHHHHhCCCCC
Confidence 3589999999999 689999999999987544
No 64
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=51.12 E-value=19 Score=38.58 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhh----cCCCCcCcHHHHHHHHHHhhhccCceEEEEcCCchhHHHHHHHHHHHHhCCCCC-----
Q 003105 188 LIKEYIDEVSTQLRMVC----DSDSEELSLEERLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVENKLMP----- 258 (847)
Q Consensus 188 LIEeYI~EV~~~L~~l~----~~~~~~~~~~~Kl~Ff~~~r~s~GrtALVLSGGGarGlyHiGVLKAL~E~gLlP----- 258 (847)
--..|++.+-+.|+-+. +.+-..-+.++--.++.++ -.+..+||-+|-+ |+.|.|.|+..
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~------d~IyVgGGNTF~L-----L~~lke~gld~iIr~~ 114 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKA------DIIYVGGGNTFNL-----LQELKETGLDDIIRER 114 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhc------cEEEECCchHHHH-----HHHHHHhCcHHHHHHH
Confidence 34779999988887542 1111112223323332222 4566677766654 56677777653
Q ss_pred ----ceEeecchHHHHHH
Q 003105 259 ----RIIAGSSVGSIICS 272 (847)
Q Consensus 259 ----dIISGTSaGAIVAA 272 (847)
-...|.||||++|+
T Consensus 115 vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 115 VKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHcCCceEEeccCceeec
Confidence 24889999999875
No 65
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=47.35 E-value=20 Score=37.85 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=27.5
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
+.+.++.+=++.|.|+|+.+|..+|...++.+..+
T Consensus 85 i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 85 LDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred HHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 44457777779999999999999999876655554
No 66
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=46.55 E-value=24 Score=40.34 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCceEeecchHHHHHHHHhcCCh
Q 003105 244 HVGVVKTLVENKLMPRIIAGSSVGSIICSAVATRSW 279 (847)
Q Consensus 244 HiGVLKAL~E~gLlPdIISGTSaGAIVAAllatgt~ 279 (847)
-.+.+..|+++|.-|=.|+|.|+|+.+|++.|+..+
T Consensus 162 ~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~~~p 197 (348)
T PF09752_consen 162 SRALLHWLEREGYGPLGLTGISMGGHMAALAASNWP 197 (348)
T ss_pred HHHHHHHHHhcCCCceEEEEechhHhhHHhhhhcCC
Confidence 345667788899999999999999999999998644
No 67
>PF03576 Peptidase_S58: Peptidase family S58 ; InterPro: IPR005321 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S58 (DmpA aminopeptidase family, clan PB(S)). The protein fold of the peptidase unit for members of this family resembles that of archaean proteasome subunit B, the type example of clan PB. The type example is aminopeptidase DmpA from OOchrobactrum anthropi. This family also contains proteins that have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the family. L-aminopeptidase D-Ala-esterase/amidase (DmpA) from O. anthropi releases the N-terminal L and/or D-Ala residues from peptide substrates. This is the only known enzyme to liberate N-terminal amino acids with both D and L stereospecificity. DmpA active form is an alphabeta heterodimer, which results from a putative autocatalytic cleavage of an inactive precursor polypeptide. DmpA shows structural homology to N-terminal nucleophile (Ntn) hydrolase family members, and may work by a similar catalytic mechanism, however their secondary structure elements differ significantly [].; PDB: 2DRH_D 3N5I_D 3N33_A 3NFB_A 3N2W_C 3NDV_D 1B65_C 3AXG_O 3S3U_A.
Probab=46.35 E-value=20 Score=40.63 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=25.6
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhCCCC
Q 003105 231 ALLLSGGASLGAFHVGVVKTLVENKLM 257 (847)
Q Consensus 231 ALVLSGGGarGlyHiGVLKAL~E~gLl 257 (847)
+++|+||.++|+++-||++.|+|++..
T Consensus 69 ~I~Ltggsa~Glaa~gv~~~l~e~~~~ 95 (326)
T PF03576_consen 69 AIVLTGGSAFGLAADGVMRWLEERGIG 95 (326)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHTTT
T ss_pred eEEEeCCchHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999763
No 68
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=45.79 E-value=22 Score=36.06 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCCceEeecchHHHHHHHHhcCChhh
Q 003105 247 VVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPE 281 (847)
Q Consensus 247 VLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eE 281 (847)
+++.|.+.++.+=++.|.|+|+.+|..++....++
T Consensus 56 l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~ 90 (242)
T PRK11126 56 LSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAG 90 (242)
T ss_pred HHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcc
Confidence 44445566888888999999999999999875443
No 69
>PRK07581 hypothetical protein; Validated
Probab=43.35 E-value=25 Score=38.45 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=28.6
Q ss_pred HHh-CCCCC-ceEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 251 LVE-NKLMP-RIIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 251 L~E-~gLlP-dIISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
|.+ .|+.. -+|+|.|+|+.||.-+|...++.+.+++
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lv 153 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAA 153 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhhe
Confidence 544 68876 4689999999999999998877666654
No 70
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=43.29 E-value=77 Score=31.41 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=6.5
Q ss_pred hcccceec
Q 003105 55 FVTPLISW 62 (847)
Q Consensus 55 ~~~~~~~~ 62 (847)
++|+-+||
T Consensus 9 ~~P~~vsw 16 (146)
T PF14316_consen 9 HLPPPVSW 16 (146)
T ss_pred CCCCCCCC
Confidence 57888888
No 71
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=43.26 E-value=24 Score=36.24 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=24.4
Q ss_pred HHHhCCCCCceEeecchHHHHHHHHhcCChh
Q 003105 250 TLVENKLMPRIIAGSSVGSIICSAVATRSWP 280 (847)
Q Consensus 250 AL~E~gLlPdIISGTSaGAIVAAllatgt~e 280 (847)
.+.+.++.+-++.|.|+|+.+|..++....+
T Consensus 88 ~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~ 118 (278)
T TIGR03056 88 LCAAEGLSPDGVIGHSAGAAIALRLALDGPV 118 (278)
T ss_pred HHHHcCCCCceEEEECccHHHHHHHHHhCCc
Confidence 3444577788999999999999999876543
No 72
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=42.27 E-value=28 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCCceEeecchHHHHHHHHhcCChh
Q 003105 247 VVKTLVENKLMPRIIAGSSVGSIICSAVATRSWP 280 (847)
Q Consensus 247 VLKAL~E~gLlPdIISGTSaGAIVAAllatgt~e 280 (847)
+.+.|.+.+..+-++.|.|.|+.+|..++....+
T Consensus 56 l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~ 89 (228)
T PF12697_consen 56 LAELLDALGIKKVILVGHSMGGMIALRLAARYPD 89 (228)
T ss_dssp HHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGG
T ss_pred hhhccccccccccccccccccccccccccccccc
Confidence 3444555677777899999999999999976544
No 73
>PRK10673 acyl-CoA esterase; Provisional
Probab=42.08 E-value=28 Score=35.56 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHhCCCCCceEeecchHHHHHHHHhcCChhhhHH
Q 003105 250 TLVENKLMPRIIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 250 AL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~ 284 (847)
.+...++.+=++.|.|+|+.+|..++....+.+..
T Consensus 74 ~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~ 108 (255)
T PRK10673 74 TLDALQIEKATFIGHSMGGKAVMALTALAPDRIDK 108 (255)
T ss_pred HHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcce
Confidence 34444665557999999999999999875554443
No 74
>COG5093 Uncharacterized conserved protein [Function unknown]
Probab=41.18 E-value=2.5e+02 Score=29.00 Aligned_cols=130 Identities=23% Similarity=0.228 Sum_probs=76.3
Q ss_pred hhcccceeccCCCChhhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----HHHHhhccCHHH----HHHHHHHHhccC
Q 003105 54 DFVTPLISWLHPRNPQGILAMVTIIAFLLKRCTNVKLRAEMAYRRKFW----RNMMRTALTYEE----WAHAAKMLDKET 125 (847)
Q Consensus 54 ~~~~~~~~~~~~r~p~~il~~~~~~~f~~~~~~~~~~r~~~~~r~~~l----~~~L~~A~tYeE----W~~aA~~LD~l~ 125 (847)
..+||+++ ..+--+..|++..++|--.-+.++-.-...+.| +-....+.+|.| |...|.+|=..-
T Consensus 42 ~t~p~m~p-------~~~~rvpLw~ALlLKkqn~c~Iv~P~wl~~~~L~~~i~~e~~~~d~fSelp~~wl~lA~~Lln~~ 114 (185)
T COG5093 42 ATYPPMMP-------LDIARVPLWAALLLKKQNMCKIVLPSWLQLESLKMSIDVEIEKADEFSELPPYWLPLATELLNEN 114 (185)
T ss_pred hcCCCCCC-------chhhhhHHHHHHHHHhcccccccChhHhhHHHHHhhhhHHHhcccccccCCchHHHHHHHHHHhc
Confidence 46777763 367777788898888843332321111122222 223456778876 999998875332
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhccccccCCccccccccchhhHHHHHHHHHHHHHHHhh
Q 003105 126 PKMNESDLYDEELVRIKVQELHHRRQEGSLRDIIFCMRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVSTQLRMVC 204 (847)
Q Consensus 126 g~~~~S~~YDy~lI~~rL~~Lr~aR~~~D~~~L~~~LR~~L~RNlGgi~n~~Ly~~~~gTK~LIEeYI~EV~~~L~~l~ 204 (847)
. .+.-|-+-+|..++.+|+.|+.+-..+|..+=-..| ||-|+ .|+. =+=|..+|.|+.+-++-|.
T Consensus 115 -~---ddvediee~r~iv~dirEiRq~K~lkGlk~lne~~L--~ldNl---~l~E-----iNEirp~i~e~md~~R~I~ 179 (185)
T COG5093 115 -C---DDVEDIEESRMIVEDIREIRQAKTLKGLKCLNEKAL--NLDNL---TLFE-----INEIRPLILESMDVGRRIE 179 (185)
T ss_pred -c---chHhHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhc--Ccccc---chhh-----hhhhHHHHHHHHHHHHHHH
Confidence 1 122345666777999999999888777654333333 44433 3332 1346677777777666553
No 75
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=41.15 E-value=31 Score=34.46 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 249 KTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 249 KAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
+.+.+.++.+=++.|.|+|+.+|..++....+.+..+
T Consensus 72 ~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~ 108 (257)
T TIGR03611 72 QLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSL 108 (257)
T ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHh
Confidence 3344456666679999999999999988655544443
No 76
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=41.01 E-value=28 Score=37.03 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHH-HHhCCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 247 VVKT-LVENKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 247 VLKA-L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
.+.+ |.+.++.+-++.|.|+|+.||..++...++.+.
T Consensus 91 ~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~ 128 (294)
T PLN02824 91 QLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVR 128 (294)
T ss_pred HHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhhee
Confidence 3444 445677788899999999999999987665443
No 77
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=39.58 E-value=27 Score=32.92 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.2
Q ss_pred Cce-EeecchHHHHHHHHhcC
Q 003105 258 PRI-IAGSSVGSIICSAVATR 277 (847)
Q Consensus 258 PdI-ISGTSaGAIVAAllatg 277 (847)
.++ |+|.|.|+.+|.+++..
T Consensus 64 ~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 64 YSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp SEEEEEEETHHHHHHHHHHHH
T ss_pred ccchhhccchHHHHHHHHHHh
Confidence 444 99999999999999974
No 78
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=39.18 E-value=28 Score=38.45 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHH-hCCCCCc-eEeecchHHHHHHHHhcCChhhhHH
Q 003105 245 VGVVKTLV-ENKLMPR-IIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 245 iGVLKAL~-E~gLlPd-IISGTSaGAIVAAllatgt~eEL~~ 284 (847)
+--+.+|. +.|+... ++.|.|+|+.||..++...++.+..
T Consensus 124 a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 124 ADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred HHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 33344444 4577655 5999999999999999876554443
No 79
>cd02253 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.
Probab=38.97 E-value=29 Score=39.59 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHHHhCCCCCce
Q 003105 230 TALLLSGGASLGAFHVGVVKTLVENKLMPRI 260 (847)
Q Consensus 230 tALVLSGGGarGlyHiGVLKAL~E~gLlPdI 260 (847)
++++|+||.++|.++-||++.|+|++.-+..
T Consensus 82 ~~IvLTggsa~G~aa~gv~~~l~e~~~g~~~ 112 (339)
T cd02253 82 TPILLTNTLSVGTVRDALIRWMLDQNPEIGR 112 (339)
T ss_pred CcEEEECccHHHHHHHHHHHHHHHhCCCCCC
Confidence 5999999999999999999999999876543
No 80
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=38.64 E-value=27 Score=38.65 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHhCCCCC-ceEeecchHHHHHHHHhcCChhhhHH
Q 003105 249 KTLVENKLMP-RIIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 249 KAL~E~gLlP-dIISGTSaGAIVAAllatgt~eEL~~ 284 (847)
+.+.+.|+.. -++.|.|+|+++|..++...++.+..
T Consensus 118 ~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~ 154 (351)
T TIGR01392 118 LLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRA 154 (351)
T ss_pred HHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 3445568876 68999999999999999876555443
No 81
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=37.86 E-value=43 Score=32.98 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 249 KTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 249 KAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
+.+...+..+=++.|.|+|+.+|..++....+.+..++
T Consensus 71 ~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li 108 (251)
T TIGR02427 71 ALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALV 108 (251)
T ss_pred HHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHHh
Confidence 33444465555789999999999999887666555544
No 82
>PLN02847 triacylglycerol lipase
Probab=36.83 E-value=22 Score=43.25 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.5
Q ss_pred eEeecchHHHHHHHHhc
Q 003105 260 IIAGSSVGSIICSAVAT 276 (847)
Q Consensus 260 IISGTSaGAIVAAllat 276 (847)
+|+|+|.||-+|++++.
T Consensus 254 VITGHSLGGGVAALLAi 270 (633)
T PLN02847 254 KIVGHSLGGGTAALLTY 270 (633)
T ss_pred EEeccChHHHHHHHHHH
Confidence 59999999999999975
No 83
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=36.64 E-value=28 Score=36.26 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHH-HhCCCCCceEeecchHHHHHHHHhcCChhhhHH
Q 003105 245 VGVVKTL-VENKLMPRIIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 245 iGVLKAL-~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~ 284 (847)
...++++ ...++.+=++.|.|+|+.+|..++...++.+..
T Consensus 88 ~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~ 128 (282)
T TIGR03343 88 ARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGK 128 (282)
T ss_pred HHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhce
Confidence 4444444 445777678999999999999999876555443
No 84
>PRK10637 cysG siroheme synthase; Provisional
Probab=35.82 E-value=3.8e+02 Score=31.58 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhccCceEEEEcCCchhHHHH--HHHHHHHHhCCCCCceEeecchHHHHHHHHhcC
Q 003105 214 EERLAFMHETRHAFGRTALLLSGGASLGAFH--VGVVKTLVENKLMPRIIAGSSVGSIICSAVATR 277 (847)
Q Consensus 214 ~~Kl~Ff~~~r~s~GrtALVLSGGGarGlyH--iGVLKAL~E~gLlPdIISGTSaGAIVAAllatg 277 (847)
++-.++..+.-+ -|+...+|..|=. ++|- .=.+++|.+.|+...+|-|.|+-...+|.++.-
T Consensus 280 ~~~~~~i~~~~~-~G~~Vv~L~sGDP-~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~p 343 (457)
T PRK10637 280 EEINQILLREAQ-KGKRVVRLKGGDP-FIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIP 343 (457)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCCc-cccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCC
Confidence 333344433322 3665555554332 2232 224677888899999999999888888777653
No 85
>PLN02965 Probable pheophorbidase
Probab=34.37 E-value=36 Score=35.50 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHhCCC-CCceEeecchHHHHHHHHhcCChhhh
Q 003105 248 VKTLVENKL-MPRIIAGSSVGSIICSAVATRSWPEL 282 (847)
Q Consensus 248 LKAL~E~gL-lPdIISGTSaGAIVAAllatgt~eEL 282 (847)
.+.+.+.++ .+=++.|.|+|+.||..++.+.++.+
T Consensus 62 ~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v 97 (255)
T PLN02965 62 FALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKI 97 (255)
T ss_pred HHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchhe
Confidence 333444465 37789999999999999998655444
No 86
>PRK00870 haloalkane dehalogenase; Provisional
Probab=33.92 E-value=43 Score=35.89 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=25.3
Q ss_pred HHHHhCCCCCceEeecchHHHHHHHHhcCChhhh
Q 003105 249 KTLVENKLMPRIIAGSSVGSIICSAVATRSWPEL 282 (847)
Q Consensus 249 KAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL 282 (847)
+.|.+.++.+=++.|.|+|+++|..++....+.+
T Consensus 107 ~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v 140 (302)
T PRK00870 107 SWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRF 140 (302)
T ss_pred HHHHHcCCCCEEEEEEChHHHHHHHHHHhChhhe
Confidence 3344557776679999999999999998654433
No 87
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=33.89 E-value=1e+02 Score=30.27 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhccCC-CCCCCCccCHHHHHHHHHHHHHHHhcCCHHHHH
Q 003105 110 TYEEWAHAAKMLDKETP-KMNESDLYDEELVRIKVQELHHRRQEGSLRDII 159 (847)
Q Consensus 110 tYeEW~~aA~~LD~l~g-~~~~S~~YDy~lI~~rL~~Lr~aR~~~D~~~L~ 159 (847)
.|+||++. +|++|+- +. .-+.=|++||+|+.......-|
T Consensus 71 AFD~YR~~--tL~RLEeEq~---------eF~~Fl~rLR~AKDk~EFD~FM 110 (115)
T PF11014_consen 71 AFDEYRED--TLRRLEEEQR---------EFEDFLERLRRAKDKEEFDQFM 110 (115)
T ss_pred hHHHHHHH--HHHHHHHHHH---------HHHHHHHHHHHhhhHHHHHHHH
Confidence 47888764 5566552 11 4455677888887665555433
No 88
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=33.25 E-value=57 Score=39.40 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHH-hCCCCCceEeecchHHHHHHHHhc
Q 003105 244 HVGVVKTLV-ENKLMPRIIAGSSVGSIICSAVAT 276 (847)
Q Consensus 244 HiGVLKAL~-E~gLlPdIISGTSaGAIVAAllat 276 (847)
..+..+.|. +.|+.|+.+.|.|+|-+.|++.+-
T Consensus 251 ~~aLa~ll~~~~GI~Pdav~GHSlGE~aAa~aAG 284 (538)
T TIGR02816 251 SYLLTQLLCDEFAIKPDFALGYSKGEASMWASLG 284 (538)
T ss_pred HHHHHHHHHHhcCCCCCEEeecCHHHHHHHHHhC
Confidence 444556663 689999999999999999887764
No 89
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=33.01 E-value=40 Score=33.11 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 248 VKTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 248 LKAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
++.+.+..-.+-++.|.|+|+.+|..++...++.+..+
T Consensus 56 ~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 93 (245)
T TIGR01738 56 AEAIAAQAPDPAIWLGWSLGGLVALHIAATHPDRVRAL 93 (245)
T ss_pred HHHHHHhCCCCeEEEEEcHHHHHHHHHHHHCHHhhhee
Confidence 33444433345679999999999999988765555543
No 90
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=32.40 E-value=46 Score=36.37 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCCceEeecchHHHHHHHHhcCChhh
Q 003105 247 VVKTLVENKLMPRIIAGSSVGSIICSAVATRSWPE 281 (847)
Q Consensus 247 VLKAL~E~gLlPdIISGTSaGAIVAAllatgt~eE 281 (847)
+++.|.+.+..+=++.|.|+|+.+|..++....+.
T Consensus 89 ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~ 123 (266)
T TIGR03101 89 AYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAK 123 (266)
T ss_pred HHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccc
Confidence 45566677777778999999999999888764433
No 91
>PRK03592 haloalkane dehalogenase; Provisional
Probab=32.36 E-value=48 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
+.+.++.+-++.|.|+|+.||..++...++.+.
T Consensus 87 l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~ 119 (295)
T PRK03592 87 FDALGLDDVVLVGHDWGSALGFDWAARHPDRVR 119 (295)
T ss_pred HHHhCCCCeEEEEECHHHHHHHHHHHhChhhee
Confidence 344577788899999999999999987655443
No 92
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=31.88 E-value=2.1e+02 Score=27.24 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=40.2
Q ss_pred HhhccCHHHHHHHHHHHhccCC---CC-----CCCCccCHHHHHHHHHHHHHHHhcCCHHHHH
Q 003105 105 MRTALTYEEWAHAAKMLDKETP---KM-----NESDLYDEELVRIKVQELHHRRQEGSLRDII 159 (847)
Q Consensus 105 L~~A~tYeEW~~aA~~LD~l~g---~~-----~~S~~YDy~lI~~rL~~Lr~aR~~~D~~~L~ 159 (847)
++.+-.=++|..|...++++.. +. .-.++-+...|..-+.+|+.+-+.+|-...+
T Consensus 35 i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l 97 (121)
T PF14276_consen 35 IEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESL 97 (121)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444899999999999873 11 1356777888889999999999888865443
No 93
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=30.47 E-value=78 Score=44.99 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhCCCCCceEeecchHHHHHHHHhcC-ChhhhH
Q 003105 239 SLGAFHVGVVKTLVENKLMPRIIAGSSVGSIICSAVATR-SWPELQ 283 (847)
Q Consensus 239 arGlyHiGVLKAL~E~gLlPdIISGTSaGAIVAAllatg-t~eEL~ 283 (847)
+.+++.++..+.|.+.|+.|+++.|+|.|-+.|++.+-- +.++..
T Consensus 656 aI~a~q~Al~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGvls~edal 701 (2582)
T TIGR02813 656 AIGTLSMGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYM 701 (2582)
T ss_pred HHHHHHHHHHHHHHHcCCccceeecCCHHHHHHHHHhCCCCHHHHH
Confidence 345678888999999999999999999999777665432 444443
No 94
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=29.75 E-value=36 Score=34.46 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
+.+.++.+-++.|.|+|+.+|..++...++.+.
T Consensus 90 ~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~ 122 (288)
T TIGR01250 90 REKLGLDKFYLLGHSWGGMLAQEYALKYGQHLK 122 (288)
T ss_pred HHHcCCCcEEEEEeehHHHHHHHHHHhCccccc
Confidence 334466667799999999999999886544333
No 95
>PRK06489 hypothetical protein; Provisional
Probab=29.67 E-value=45 Score=37.10 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=26.2
Q ss_pred hCCCCCc-eEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 253 ENKLMPR-IIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 253 E~gLlPd-IISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
..|+..- +|+|.|+|+.||..++.+.++.+..++
T Consensus 149 ~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV 183 (360)
T PRK06489 149 GLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM 183 (360)
T ss_pred hcCCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence 3576654 589999999999999998776665544
No 96
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=28.66 E-value=44 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=19.1
Q ss_pred CCCCc--eEeecchHHHHHHHHhcC
Q 003105 255 KLMPR--IIAGSSVGSIICSAVATR 277 (847)
Q Consensus 255 gLlPd--IISGTSaGAIVAAllatg 277 (847)
|+.++ +|+|.|+||-+|+.++..
T Consensus 67 ~~d~~~i~l~G~SAGg~la~~~~~~ 91 (211)
T PF07859_consen 67 GIDPERIVLIGDSAGGHLALSLALR 91 (211)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred cccccceEEeecccccchhhhhhhh
Confidence 66664 489999999999999965
No 97
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=28.34 E-value=66 Score=36.34 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=26.8
Q ss_pred HHHHhCCCCCc-eEeecchHHHHHHHHhcCChhhhHH
Q 003105 249 KTLVENKLMPR-IIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 249 KAL~E~gLlPd-IISGTSaGAIVAAllatgt~eEL~~ 284 (847)
..|.+.|+... ++.|.|+|+.+|..++...++.+..
T Consensus 138 ~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~ 174 (379)
T PRK00175 138 RLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRS 174 (379)
T ss_pred HHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhE
Confidence 33444588774 7999999999999999876554443
No 98
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=27.75 E-value=45 Score=32.59 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCCCceEeecchHHHHHHHHhcCChh
Q 003105 254 NKLMPRIIAGSSVGSIICSAVATRSWP 280 (847)
Q Consensus 254 ~gLlPdIISGTSaGAIVAAllatgt~e 280 (847)
.+..+=++.|.|+|+.+|..++....+
T Consensus 67 ~~~~~~~l~G~S~Gg~ia~~~a~~~~~ 93 (251)
T TIGR03695 67 LGIEPFFLVGYSMGGRIALYYALQYPE 93 (251)
T ss_pred cCCCeEEEEEeccHHHHHHHHHHhCch
Confidence 366666799999999999999987544
No 99
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=27.34 E-value=1.1e+02 Score=34.32 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCCC------ceEeecchHHHHHHHHhcC-ChhhhHHHHH
Q 003105 241 GAFHVGVVKTLVENKLMP------RIIAGSSVGSIICSAVATR-SWPELQSFFE 287 (847)
Q Consensus 241 GlyHiGVLKAL~E~gLlP------dIISGTSaGAIVAAllatg-t~eEL~~~l~ 287 (847)
-++.++..+.|...|+.| ++++|.|.|-+.|+.++-- +.++..++..
T Consensus 102 ~~~~~a~~~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG~ls~e~al~lv~ 155 (343)
T PLN02752 102 YVASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVK 155 (343)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCeeeeccHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346777888898888654 5679999999777765532 4555555443
No 100
>PRK11071 esterase YqiA; Provisional
Probab=26.24 E-value=77 Score=32.42 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHHH-hCCCCCceEeecchHHHHHHHHhcCC
Q 003105 245 VGVVKTLV-ENKLMPRIIAGSSVGSIICSAVATRS 278 (847)
Q Consensus 245 iGVLKAL~-E~gLlPdIISGTSaGAIVAAllatgt 278 (847)
.-.+..+. +.++.+-++.|.|+|+.+|..+|...
T Consensus 48 ~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~ 82 (190)
T PRK11071 48 AELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCF 82 (190)
T ss_pred HHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHc
Confidence 33444444 44666778999999999999998753
No 101
>PRK10349 carboxylesterase BioH; Provisional
Probab=25.14 E-value=66 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHhCCCCCceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 249 KTLVENKLMPRIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 249 KAL~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
+.+.+.++..=++.|.|+|+.+|..+|...++.+..+
T Consensus 66 ~~l~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 102 (256)
T PRK10349 66 EAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL 102 (256)
T ss_pred HHHHhcCCCCeEEEEECHHHHHHHHHHHhChHhhheE
Confidence 3444556655679999999999999998766555543
No 102
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.12 E-value=2.2e+02 Score=24.22 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=5.9
Q ss_pred ChhhHHHHHH
Q 003105 67 NPQGILAMVT 76 (847)
Q Consensus 67 ~p~~il~~~~ 76 (847)
.|.+++.+++
T Consensus 18 ~pl~l~il~~ 27 (68)
T PF06305_consen 18 LPLGLLILIA 27 (68)
T ss_pred chHHHHHHHH
Confidence 6766665544
No 103
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=25.00 E-value=76 Score=34.29 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHHh-CCCCCceEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 245 VGVVKTLVE-NKLMPRIIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 245 iGVLKAL~E-~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
...+.+|.+ .++.+=++.|.|+|+.+|..++....+.+..++
T Consensus 82 ~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lv 124 (306)
T TIGR01249 82 VADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLV 124 (306)
T ss_pred HHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhhe
Confidence 444555444 366655799999999999999987665555443
No 104
>PLN02578 hydrolase
Probab=24.00 E-value=75 Score=35.38 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
+.+.+..+-+|.|.|+|+.+|..++.+..+.+.
T Consensus 146 i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~ 178 (354)
T PLN02578 146 VKEVVKEPAVLVGNSLGGFTALSTAVGYPELVA 178 (354)
T ss_pred HHHhccCCeEEEEECHHHHHHHHHHHhChHhcc
Confidence 334455677899999999999999987655443
No 105
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=23.43 E-value=82 Score=34.27 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=24.4
Q ss_pred HHHHHHHhCC---CCCceEeecchHHHHHHHHhcCChh
Q 003105 246 GVVKTLVENK---LMPRIIAGSSVGSIICSAVATRSWP 280 (847)
Q Consensus 246 GVLKAL~E~g---LlPdIISGTSaGAIVAAllatgt~e 280 (847)
.+++.|.... -.|-++.|.|+|+.+|..++...++
T Consensus 120 ~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~ 157 (330)
T PLN02298 120 SFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPE 157 (330)
T ss_pred HHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcc
Confidence 3555555431 2356899999999999988876543
No 106
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.41 E-value=1.8e+02 Score=30.21 Aligned_cols=43 Identities=7% Similarity=0.401 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHhhhccCc
Q 003105 185 VPKLIKEYIDEVSTQLRMVCDSDSEELSLEERLAFMHETRHAFGR 229 (847)
Q Consensus 185 TK~LIEeYI~EV~~~L~~l~~~~~~~~~~~~Kl~Ff~~~r~s~Gr 229 (847)
+..++++|+-+....++.|. ...+++.++|.+.+....-+|-|
T Consensus 68 ~~~~l~~f~~Q~~~tmeel~--~~~~~~~~~k~~~LasLaDsf~K 110 (165)
T PF08822_consen 68 ARQMLEDFVVQYQATMEELK--ENEDMPPQEKVELLASLADSFSK 110 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccCCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999999986 34689999999999888777644
No 107
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=22.61 E-value=66 Score=35.57 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCC-----CCCceEeecchHHHHHHHHhcCChhhh
Q 003105 243 FHVGVVKTLVENK-----LMPRIIAGSSVGSIICSAVATRSWPEL 282 (847)
Q Consensus 243 yHiGVLKAL~E~g-----LlPdIISGTSaGAIVAAllatgt~eEL 282 (847)
..++.++++.+.- -+|-++.|.|||++||..++......+
T Consensus 88 ~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i 132 (298)
T COG2267 88 DYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRI 132 (298)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccc
Confidence 3577788877642 367889999999999999998765433
No 108
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=22.60 E-value=71 Score=33.18 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCceEeecchHHHHHHHHhcC
Q 003105 246 GVVKTLVENKLMPRIIAGSSVGSIICSAVATR 277 (847)
Q Consensus 246 GVLKAL~E~gLlPdIISGTSaGAIVAAllatg 277 (847)
-|.+.+.+.| ++|-|-|-|-||.+|++++..
T Consensus 92 ~l~~~i~~~G-PfdGvlGFSQGA~lAa~ll~~ 122 (212)
T PF03959_consen 92 YLRDYIEENG-PFDGVLGFSQGAALAALLLAL 122 (212)
T ss_dssp HHHHHHHHH----SEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CeEEEEeecHHHHHHHHHHHH
Confidence 3444455544 489999999999999999864
No 109
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=22.58 E-value=77 Score=36.47 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=27.5
Q ss_pred HHHHhCCCCC-ceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 249 KTLVENKLMP-RIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 249 KAL~E~gLlP-dIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
+.|.+.|+.. .++.|.|+|+++|..+|...++.+..+
T Consensus 152 ~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~l 189 (389)
T PRK06765 152 ELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERM 189 (389)
T ss_pred HHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 3344468764 459999999999999999876665543
No 110
>PRK13604 luxD acyl transferase; Provisional
Probab=22.39 E-value=1.1e+02 Score=34.60 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCceEeecchHHHHHHHHhc
Q 003105 244 HVGVVKTLVENKLMPRIIAGSSVGSIICSAVAT 276 (847)
Q Consensus 244 HiGVLKAL~E~gLlPdIISGTSaGAIVAAllat 276 (847)
-.+|++.|.+++...=.+.|.|+||.+|.+.|.
T Consensus 95 l~aaid~lk~~~~~~I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 95 LLTVVDWLNTRGINNLGLIAASLSARIAYEVIN 127 (307)
T ss_pred HHHHHHHHHhcCCCceEEEEECHHHHHHHHHhc
Confidence 356788888877655569999999999866664
No 111
>PRK10749 lysophospholipase L2; Provisional
Probab=22.38 E-value=82 Score=34.62 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=22.0
Q ss_pred CCCCceEeecchHHHHHHHHhcCChhh
Q 003105 255 KLMPRIIAGSSVGSIICSAVATRSWPE 281 (847)
Q Consensus 255 gLlPdIISGTSaGAIVAAllatgt~eE 281 (847)
+..|=++.|.|+|+.+|..++....+.
T Consensus 129 ~~~~~~l~GhSmGG~ia~~~a~~~p~~ 155 (330)
T PRK10749 129 PYRKRYALAHSMGGAILTLFLQRHPGV 155 (330)
T ss_pred CCCCeEEEEEcHHHHHHHHHHHhCCCC
Confidence 566778999999999999998865443
No 112
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=22.22 E-value=1e+02 Score=34.64 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=42.1
Q ss_pred cCceEEEEcCCch----------hHHHHHHHHHHHH-hCCCCCceEeecchHHHHHHHHhcCChhhhHHH
Q 003105 227 FGRTALLLSGGAS----------LGAFHVGVVKTLV-ENKLMPRIIAGSSVGSIICSAVATRSWPELQSF 285 (847)
Q Consensus 227 ~GrtALVLSGGGa----------rGlyHiGVLKAL~-E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~ 285 (847)
+.-.|+-|=|+|. -...+...++.+. +.+-.+=.+.|.|+|+++|..+|+.-++.++.+
T Consensus 87 ~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~l 156 (326)
T KOG1454|consen 87 LRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDSL 156 (326)
T ss_pred eEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccccce
Confidence 4557888888772 2345666666654 446677779999999999999999855554443
No 113
>PRK10566 esterase; Provisional
Probab=21.81 E-value=88 Score=32.21 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=23.3
Q ss_pred HHHHHHhCC-CCCc--eEeecchHHHHHHHHhcCC
Q 003105 247 VVKTLVENK-LMPR--IIAGSSVGSIICSAVATRS 278 (847)
Q Consensus 247 VLKAL~E~g-LlPd--IISGTSaGAIVAAllatgt 278 (847)
+++.|.+++ +.++ +|.|.|+|+.+|..++...
T Consensus 94 ~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~ 128 (249)
T PRK10566 94 LRAAIREEGWLLDDRLAVGGASMGGMTALGIMARH 128 (249)
T ss_pred HHHHHHhcCCcCccceeEEeecccHHHHHHHHHhC
Confidence 456666665 4443 5999999999999887653
No 114
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=21.50 E-value=97 Score=35.53 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
+.+.++.+-++.|.|+|+.+|..++....+.+.
T Consensus 170 ~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~ 202 (402)
T PLN02894 170 RKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQ 202 (402)
T ss_pred HHHcCCCCeEEEEECHHHHHHHHHHHhCchhhc
Confidence 334577777899999999999999987654443
No 115
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=20.76 E-value=1.8e+02 Score=32.77 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCC--CCCceEeecchHHHHHHHHhcC-ChhhhHHHH
Q 003105 241 GAFHVGVVKTLVENK--LMPRIIAGSSVGSIICSAVATR-SWPELQSFF 286 (847)
Q Consensus 241 GlyHiGVLKAL~E~g--LlPdIISGTSaGAIVAAllatg-t~eEL~~~l 286 (847)
.+..+-+.+.|.+++ ..|++++|+|-|-..|...+-- +-++..+++
T Consensus 67 ~~~s~a~~~~l~~~~~~~~p~~~aGHSlGEysAl~~ag~~~~ed~~~Lv 115 (310)
T COG0331 67 LLVSLAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLV 115 (310)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeecccHhHHHHHHHcccccHHHHHHHH
Confidence 456677788899977 8999999999998876555442 334444443
No 116
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=20.50 E-value=1.2e+02 Score=35.90 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=25.8
Q ss_pred HhCCCCCceEeecchHHHHHHHHhcCChhhhHHHH
Q 003105 252 VENKLMPRIIAGSSVGSIICSAVATRSWPELQSFF 286 (847)
Q Consensus 252 ~E~gLlPdIISGTSaGAIVAAllatgt~eEL~~~l 286 (847)
...+..+=+|.|.|||++++..++....+...+++
T Consensus 157 ~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I 191 (440)
T PLN02733 157 KASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYV 191 (440)
T ss_pred HHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHh
Confidence 34577788899999999999988876544444443
No 117
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=20.35 E-value=90 Score=30.76 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCCCceEeecchHHHHHHHHhcCChhhhH
Q 003105 254 NKLMPRIIAGSSVGSIICSAVATRSWPELQ 283 (847)
Q Consensus 254 ~gLlPdIISGTSaGAIVAAllatgt~eEL~ 283 (847)
.|+..=.+.|.|+|+.++..++...++.+.
T Consensus 41 l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~ 70 (230)
T PF00561_consen 41 LGIKKINLVGHSMGGMLALEYAAQYPERVK 70 (230)
T ss_dssp HTTSSEEEEEETHHHHHHHHHHHHSGGGEE
T ss_pred hCCCCeEEEEECCChHHHHHHHHHCchhhc
Confidence 366666789999999999999987665443
No 118
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=20.34 E-value=69 Score=31.10 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=16.1
Q ss_pred eEeecchHHHHHHHHhcC
Q 003105 260 IIAGSSVGSIICSAVATR 277 (847)
Q Consensus 260 IISGTSaGAIVAAllatg 277 (847)
+|+|.|.||.+|.+++..
T Consensus 31 ~v~GHSlGg~lA~l~a~~ 48 (153)
T cd00741 31 HVTGHSLGGALAGLAGLD 48 (153)
T ss_pred EEEEcCHHHHHHHHHHHH
Confidence 599999999999998864
No 119
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=20.32 E-value=1e+02 Score=34.51 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=21.4
Q ss_pred HHhCCCCCceEeecchHHHHHHHHhcC
Q 003105 251 LVENKLMPRIIAGSSVGSIICSAVATR 277 (847)
Q Consensus 251 L~E~gLlPdIISGTSaGAIVAAllatg 277 (847)
|.+.++.+=++.|.|+|+++|..++..
T Consensus 149 l~~l~~~~~~lvGhS~Gg~ia~~~a~~ 175 (360)
T PLN02679 149 LEEVVQKPTVLIGNSVGSLACVIAASE 175 (360)
T ss_pred HHHhcCCCeEEEEECHHHHHHHHHHHh
Confidence 344577777899999999999888764
No 120
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.26 E-value=1.1e+02 Score=31.70 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.6
Q ss_pred ceEeecchHHHHHHHHhcC
Q 003105 259 RIIAGSSVGSIICSAVATR 277 (847)
Q Consensus 259 dIISGTSaGAIVAAllatg 277 (847)
-++.|||+|+..|..++.+
T Consensus 61 ~~liGSSlGG~~A~~La~~ 79 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAER 79 (187)
T ss_pred eEEEEEChHHHHHHHHHHH
Confidence 5899999999999998754
No 121
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=20.21 E-value=61 Score=33.57 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCCCc--eEeecchHHHHHHHHhcCCh
Q 003105 255 KLMPR--IIAGSSVGSIICSAVATRSW 279 (847)
Q Consensus 255 gLlPd--IISGTSaGAIVAAllatgt~ 279 (847)
++.++ .|+|.|+|+..|..++.+.+
T Consensus 111 ~~~~~~~~i~G~S~GG~~Al~~~l~~P 137 (251)
T PF00756_consen 111 RTDPDRRAIAGHSMGGYGALYLALRHP 137 (251)
T ss_dssp SEEECCEEEEEETHHHHHHHHHHHHST
T ss_pred ccccceeEEeccCCCcHHHHHHHHhCc
Confidence 44444 89999999999999887643
No 122
>PRK03204 haloalkane dehalogenase; Provisional
Probab=20.02 E-value=95 Score=33.33 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHH-hCCCCCceEeecchHHHHHHHHhcCChhhhHH
Q 003105 245 VGVVKTLV-ENKLMPRIIAGSSVGSIICSAVATRSWPELQS 284 (847)
Q Consensus 245 iGVLKAL~-E~gLlPdIISGTSaGAIVAAllatgt~eEL~~ 284 (847)
.-.+.++. ..++.+=++.|.|+|+.||..++...++.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~ 128 (286)
T PRK03204 88 ARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRG 128 (286)
T ss_pred HHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeE
Confidence 34444443 35777778999999999999998765554443
Done!