BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003106
(847 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 587 DMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICCH 645
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKT 703
FSSD +AT DKK +W + T K +EHS + F+ + LAT S D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
+++WD N T GH+ SV F P+ D+L+ SC DG +R W + + + +
Sbjct: 732 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSIN 789
Query: 764 VESF 767
V+ F
Sbjct: 790 VKRF 793
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 559 MMFGTDGAGTLTSPSNQ---LWDDKD------LELRADMDRLVEDGSLDDNVESFLSHDD 609
+MF DG+ LT+ +Q +W+ K + L+ ++D + ++ N L+ D+
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE-----NETMVLAVDN 949
Query: 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669
RG+ + G K ++V CC S + +A G D +
Sbjct: 950 I-------RGLQLIAG---KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 999
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729
+ ++ H + ++F+ L +SS D ++VW+ Y H +V
Sbjct: 1000 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK-- 1055
Query: 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
DF +D + S DG ++ W++ G R F
Sbjct: 1056 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V+ C SSD ++ DK A +W D L L+ H+ + FS LAT
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1154
Query: 701 DKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
+ +R+W+ + P H V + F P+ L+ G +++W+
Sbjct: 1155 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV---SAGGYLKWWN 1211
Query: 753 INNGSCTRVF 762
+ G ++ F
Sbjct: 1212 VATGDSSQTF 1221
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D +LL + D +W+ T + + + H + S + +++S DKT ++W
Sbjct: 1062 DSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 709 AD--NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
D +P + L+ GH+ V F + L+ + D +GEIR W++++G
Sbjct: 1121 FDLLSPLHELK---GHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDG 1166
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S + C FS L LW+ D+ + H S + V FSP T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 699 SFDKTVRVWD 708
S D+T+RVW+
Sbjct: 908 SDDQTIRVWE 917
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 587 DMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICCH 645
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKT 703
FSSD +AT DKK +W + T K +EHS + F+ + LAT S D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
+++WD N T GH+ SV F P+ D+L+ SC DG +R W + + + +
Sbjct: 725 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSIN 782
Query: 764 VESF 767
V+ F
Sbjct: 783 VKRF 786
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 559 MMFGTDGAGTLTSPSNQ---LWDDKD------LELRADMDRLVEDGSLDDNVESFLSHDD 609
+MF DG+ LT+ +Q +W+ K + L+ ++D + ++ N L+ D+
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE-----NETMVLAVDN 942
Query: 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669
RG+ + G K ++V CC S + +A G D +
Sbjct: 943 I-------RGLQLIAG---KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729
+ ++ H + ++F+ L +SS D ++VW+ Y H +V
Sbjct: 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK-- 1048
Query: 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
DF +D + S DG ++ W++ G R F
Sbjct: 1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D +LL + D +W+ T + + + H + S + +++S DKT ++W
Sbjct: 1055 DSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 709 AD--NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
D +P + L+ GH+ V F + L+ + D +GEIR W++++G
Sbjct: 1114 FDLLSPLHELK---GHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDG 1159
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V+ C SSD ++ DK A +W D L L+ H+ + FS LAT
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147
Query: 701 DKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
+ +R+W+ + P H V + F P+ L+ G +++W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV---SAGGYLKWWN 1204
Query: 753 INNGSCTRVF 762
+ G ++ F
Sbjct: 1205 VATGDSSQTF 1214
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S + C FS L LW+ D+ + H S + V FSP T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 699 SFDKTVRVWDA 709
S D+T+RVW+
Sbjct: 901 SDDQTIRVWET 911
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687
KE N + A +S V FS DG+ +A+ DK LW+ + +T L HSS + V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVA 64
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747
FSP +A++S DKTV++W+ + G L+T GHS+SV + F P+ + + D D
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKT 121
Query: 748 IRYWSINNGSCTRVFKVESFCCWCV 772
++ W+ NG + S W V
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGV 145
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 115
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 116 ASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN-RNGQ 171
Query: 758 CTRVFKVESFCCWCV 772
+ S W V
Sbjct: 172 LLQTLTGHSSSVWGV 186
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 238
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 239 ASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWN-RNGQ 294
Query: 758 CTRVFKVESFCCWCV 772
+ S W V
Sbjct: 295 LLQTLTGHSSSVWGV 309
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 402
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
+S DKTV++W+ + G L+T GHS+SV + F P+ D I S D ++ W+ N
Sbjct: 403 ASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRN 456
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS D + +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 484
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 485 ASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWN-RNGQ 540
Query: 758 CTRVFKVESFCCWCV 772
+ S W V
Sbjct: 541 LLQTLTGHSSSVWGV 555
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIAS 197
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ N
Sbjct: 198 ASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRN 251
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 525
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+S DKTV++W+ + G L+T GHS+SV + F P+ I S D ++ W
Sbjct: 526 ASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDG-QTIASASSDKTVKLW 576
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V F DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIAS 320
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ N
Sbjct: 321 ASDDKTVKLWNRN--GQHLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRN 374
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIAS 566
Query: 698 SSFDKTVRVWD 708
+S DKTV++W+
Sbjct: 567 ASSDKTVKLWN 577
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Query: 586 ADMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICC 644
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 610 TNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCC 669
Query: 645 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--LATSSFDK 702
FS+D + +AT DKK +W++ T + +EHS + F+ S LAT S D
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
+++WD N T GH+ SV F P+ D L+ SC DG ++ W + + +
Sbjct: 730 FLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATSANERKSI 787
Query: 763 KVESF 767
V+ F
Sbjct: 788 NVKQF 792
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-- 710
L + D +W+ T + + H + S + +++S DKT ++W D
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
P + LR GH+ V F + L+ + D +GEIR W+++NG
Sbjct: 1124 LPLHELR---GHNGCVRCSAFSVDS-TLLATGDDNGEIRIWNVSNG 1165
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V+ C S D ++ DK A +W D L L H+ + FS LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 701 DKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
+ +R+W+ N S H V L F P+ LI G I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI---SAGGYIKWWNV 1210
Query: 754 NNGSCTRVF 762
G ++ F
Sbjct: 1211 VTGESSQTF 1219
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S + C FS L LW+TD+ + H S + V FSP TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 699 SFDKTVRVWD----ADNPGYSLR-----TFMGHSASVMSLDFHPNKDDLICSCDG-DGEI 748
S D+T+R+W+ N L+ F + V+++D H + LI +G G+I
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVD-HIRRLQLI---NGRTGQI 962
Query: 749 RYWSINNGSC 758
Y + SC
Sbjct: 963 DYLTEAQVSC 972
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
F++D K L + D + +W+ L L H + D R + RL + SFD TV+
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQ-LDKCIFLRGHQETVKDFRLLKN-SRLLSWSFDGTVK 1074
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
VW+ G + F+ H +V+S D + S D + WS +
Sbjct: 1075 VWNIIT-GNKEKDFVCHQGTVLSCDISHDATKF-SSTSADKTAKIWSFD 1121
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 25/216 (11%)
Query: 559 MMFGTDGAGTLTSPSNQ---LWDDKDL-ELRADMDRLVEDGSLDDNVESFLSHDDTDPRD 614
+MF DG+ LTS +Q LW+ K + + A M + D +N L+ D
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHI---- 949
Query: 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 674
R + + G + + ++V CC S + +A G + + +
Sbjct: 950 ---RRLQLING---RTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQ 1003
Query: 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-NPGYSLRTFMGHSASVMSLDFHP 733
+ +H + ++F+ L +SS D ++VW+ + LR GH +V DF
Sbjct: 1004 SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVK--DFRL 1058
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769
K+ + S DG ++ W+I G+ K + F C
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGN-----KEKDFVC 1089
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------TLKSKTNLEEHSS---- 681
TS V C FS+DG+ LATG + V +D K NL SS
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 682 -LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740
I V FSP LAT + D+ +R+WD +N + GH + SLD+ P+ D L+
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLV- 181
Query: 741 SCDGDGEIRYWSINNGSCTRVFKVE 765
S GD +R W + G C+ +E
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE 206
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DGK LATG D+ +W + K L+ H I + + PS +L + S D+TVR
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
+WD SL + V ++ P I + D +R W G
Sbjct: 191 IWDLRTGQCSLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 614 DAGGRGMDVSQGFSFKEANSVRASTS----KVICCHFSSDGKLLATGGHDKKAVLWHTDT 669
D R D GF + +S S + V F+ DG+ + +G D+ LW+
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 670 LKSKTNLEE------------HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717
+K++ + H + V + + + + S D+ V WD + G L
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLL 346
Query: 718 TFMGHSASVMSL 729
GH SV+S+
Sbjct: 347 MLQGHRNSVISV 358
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 107 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 758 CTRVFKVES 766
C + S
Sbjct: 165 CLKTLPAHS 173
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 157 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 117 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 231
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 263
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 98
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 99 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 137
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 619 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 673
G + +G F + N ++ T V FS +G+ LA+ DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
+ +LI S D +R W + G C + S
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 136 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 78 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 619 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 673
G + +G F + N ++ T V FS +G+ LA+ DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
+ +LI S D +R W + G C + S
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 136 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 78 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 758 CTRVFKVES 766
C + S
Sbjct: 163 CLKTLPAHS 171
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 155 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 115 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 229
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 261
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 135
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 619 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 673
G + +G F + N ++ T V FS +G+ LA DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE 61
Query: 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
+ +LI S D +R W + G C + S
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 136 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA SS DK +++W A + + +T GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 78 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 758 CTRVFKVES 766
C + S
Sbjct: 147 CLKTLPAHS 155
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 139 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 88 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 758 CTRVFKVES 766
C + S
Sbjct: 146 CLKTLPAHS 154
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 138 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 98 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 212
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 244
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 79
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 80 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 758 CTRVFKVES 766
C + S
Sbjct: 147 CLKTLPAHS 155
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 139 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 758 CTRVFKVES 766
C + S
Sbjct: 147 CLKTLPAHS 155
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 139 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 100 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 758 CTRVFKVES 766
C + S
Sbjct: 158 CLKTLPAHS 166
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 150 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 110 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 224
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 256
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 91
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 92 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 130
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 82 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 758 CTRVFKVES 766
C + S
Sbjct: 140 CLKTLPAHS 148
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 132 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 92 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 206
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 238
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 73
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 74 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 112
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 83 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 758 CTRVFKVES 766
C + S
Sbjct: 141 CLKTLPAHS 149
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 133 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 93 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 207
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 75 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 113
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 84 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 758 CTRVFKVES 766
C + S
Sbjct: 142 CLKTLPAHS 150
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 134 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 94 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 208
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 240
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 75
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 76 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 83 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 758 CTRVFKVES 766
C + S
Sbjct: 141 CLKTLPAHS 149
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 133 IWDVKT-GKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 93 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 207
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 75 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 113
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 79 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 758 CTRVFKVES 766
C + S
Sbjct: 137 CLKTLPAHS 145
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 129 IWDV-KTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 89 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 203
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 235
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ + L+ + D D ++ W +++G C + K S FCC
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 109
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 86 ASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 758 CTRVFKVES 766
C + S
Sbjct: 144 CLKTLPAHS 152
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 136 IWDV-KTGMCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D +++ W + G C + + K E +C
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDS 80
Query: 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ L+ + D D ++ W +++G C + K S FCC
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 758 CTRVFKVES 766
C + S
Sbjct: 144 CLKTLPAHS 152
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
+SSD LL + DK +W + K L+ HS+ + F+P + + SFD++VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVF 762
+WD G L+T HS V ++ F N+D LI S DG R W +G C +
Sbjct: 136 IWDVKT-GMCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 739
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 740 CSCDGDGEIRYWSINNGSCTRVF---KVESFC 768
+ D ++ W + G C + + K E +C
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDS 80
Query: 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVES---FCC 769
+ L+ + D D ++ W +++G C + K S FCC
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701
+S+DG LAT DK +W TD + + L+EHS + V + PS LA+SS+D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 702 KTVRVW-DADNPGYSLRTFMGHSASVMSLDFHPNKDDL-ICSCDGDGEIRYW 751
TVR+W D D+ + GH +V S DF + +CS D +R W
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 652 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 704
LLA G D +W + +T +E H + + V +S LAT S DK+V
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 705 RVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+W+ D G + HS V + +HP+ + L+ S D +R W
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIW 180
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKK----AVLWHTDTLKSKTNLEEHSSLITDVR 687
S++ K+ FS +LATG D+K +V + TL + H I V
Sbjct: 8 KSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF--------MGHSASVMSLDFHPNKDDLI 739
+ P LA SFD TV +W + + RTF GH V + + N +
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEES--ADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYL 122
Query: 740 CSCDGDGEIRYWSINN 755
+C D + W +
Sbjct: 123 ATCSRDKSVWIWETDE 138
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
+++ T V F GKLLA+ D LW + + H ++ V P+
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYW 751
+ ++S DKT+++W+ GY ++TF GH V + PN+D LI SC D +R W
Sbjct: 205 DHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVW 261
Query: 752 SINNGSCTRVFKVESFCCWCVN 773
+ C + C++
Sbjct: 262 VVATKECKAELREHRHVVECIS 283
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 32/211 (15%)
Query: 575 QLWDDKDLELRADM---DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 631
+LWD + E M D V S+ N + +S RD + +V G+ K
Sbjct: 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS----ASRDKTIKMWEVQTGYCVKTF 230
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
R V + DG L+A+ +D+ +W T + K L EH ++ + ++P
Sbjct: 231 TGHREWVRMV---RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 692 M--------------------PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731
P L + S DKT+++WD + G L T +GH V + F
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLF 346
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
H I SC D +R W N C +
Sbjct: 347 HSG-GKFILSCADDKTLRVWDYKNKRCMKTL 376
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF- 731
K L H S +T V F P + ++S D T++VWD + + RT GH+ SV + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD 159
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
H K L+ SC D I+ W C R
Sbjct: 160 HSGK--LLASCSADMTIKLWDFQGFECIRTM 188
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709
G L +G DK +W T L H + + V F + + + DKT+RVWD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 710 DNPGYSLRTFMGHSASVMSLDFH 732
N ++T H V SLDFH
Sbjct: 368 KNK-RCMKTLNAHEHFVTSLDFH 389
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
F S GK + + DK +W + L H +T + F + P + T S D+TV+
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 706 VWD 708
VW+
Sbjct: 406 VWE 408
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 629 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 686
K ++SV A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 687 RFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 732
++SP LA+S D+ + VWD D P L GH+A + ++
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 733 PNKDDLICSCDGDGEIRYWSI 753
PN+ +ICS D ++ W +
Sbjct: 384 PNEPWVICSVSEDNIMQVWQM 404
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K ++W T +T K +++ H++ + + F+P S LAT S DKTV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L +F H + + + P+ + ++ S D + W +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWD--ADNPGYSLRTFMGHSAS 725
+ +KT H++++ DV + L S + D+ + +WD ++N + H+A
Sbjct: 216 VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 275
Query: 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
V L F+P + ++ + D + W + N
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRN 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 629 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 686
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 687 RFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 732
++SP LA+S D+ + VWD D P L GH+A + ++
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Query: 733 PNKDDLICSCDGDGEIRYWSI 753
PN+ +ICS D ++ W +
Sbjct: 390 PNEPWIICSVSEDNIMQVWQM 410
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L +F H + + + P+ + ++ S D + W +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSL--RTFMGHSAS 725
+ +K H++++ DV + L S + D+ + +WD N S T H+A
Sbjct: 222 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 281
Query: 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
V L F+P + ++ + D + W + N
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRN 311
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 629 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 686
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 687 RFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 732
++SP LA+S D+ + VWD D P L GH+A + ++
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Query: 733 PNKDDLICSCDGDGEIRYWSI 753
PN+ +ICS D ++ W +
Sbjct: 392 PNEPWIICSVSEDNIMQVWQM 412
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L +F H + + + P+ + ++ S D + W +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSL--RTFMGHSAS 725
+ +K H++++ DV + L S + D+ + +WD N S T H+A
Sbjct: 224 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 283
Query: 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
V L F+P + ++ + D + W + N
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRN 313
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 629 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 686
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 687 RFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 732
++SP LA+S D+ + VWD D P L GH+A + ++
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Query: 733 PNKDDLICSCDGDGEIRYWSI 753
PN+ +ICS D ++ W +
Sbjct: 388 PNEPWIICSVSEDNIMQVWQM 408
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L +F H + + + P+ + ++ S D + W +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSL--RTFMGHSAS 725
+ +K H++++ DV + L S + D+ + +WD N S T H+A
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279
Query: 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
V L F+P + ++ + D + W + N
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRN 309
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 694
T V+ FSSD + + +G DK LW+T K E HS ++ VRFSP S P
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 695 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 752
+ + +DK V+VW+ N L+T +GH+ + ++ P D +C+ G DG+ W
Sbjct: 188 IVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 243
Query: 753 INNG 756
+N G
Sbjct: 244 LNEG 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 652 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 704
++ + DK ++W + +TN L HS ++DV S + S+D T+
Sbjct: 53 MILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764
R+WD G + R F+GH+ V+S+ F + ++ S D I+ W+ G C +
Sbjct: 111 RLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQD 167
Query: 765 ESFCCW--CV-------NAMNRPCLWDKL 784
ES W CV N + C WDKL
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
SSDG+ +G D LW T + H+ + V FS ++ + S DKT++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINN 755
+W+ HS V + F PN + +I SC D ++ W++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 641 VICCHFS--SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
V C FS S ++ + G DK +W+ K KTN H+ + V SP A+
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D +WD N G L T G + +L F PN+ +C+ G I+ W +
Sbjct: 234 GKDGQAMLWDL-NEGKHLYTLDGGDI-INALCFSPNR-YWLCAATGP-SIKIWDL 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 694
T V+ FSSD + + +G DK LW+T K E HS ++ VRFSP S P
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 695 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 752
+ + +DK V+VW+ N L+T +GH+ + ++ P D +C+ G DG+ W
Sbjct: 165 IVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 220
Query: 753 INNG 756
+N G
Sbjct: 221 LNEG 224
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 652 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 704
++ + DK ++W + +TN L HS ++DV S + S+D T+
Sbjct: 30 MILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764
R+WD G + R F+GH+ V+S+ F + ++ S D I+ W+ G C +
Sbjct: 88 RLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQD 144
Query: 765 ESFCCW--CV-------NAMNRPCLWDKL 784
ES W CV N + C WDKL
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKL 173
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
SSDG+ +G D LW T + H+ + V FS ++ + S DKT++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINN 755
+W+ HS V + F PN + +I SC D ++ W++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 641 VICCHFS--SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
V C FS S ++ + G DK +W+ K KTN H+ + V SP A+
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D +WD N G L T G + +L F PN+ +C+ G I+ W +
Sbjct: 211 GKDGQAMLWDL-NEGKHLYTLDGGDI-INALCFSPNR-YWLCAATGP-SIKIWDL 261
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEE 678
D + K ++ V A T++V C F+ + +LATG DK LW LK K + E
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 679 HSSLITDVRFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSA 724
H I V +SP LA+S D+ + VWD D P L GH+A
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
+ ++PN+ +ICS D ++ W +
Sbjct: 378 KISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K ++W T T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L TF H + + + P+ + ++ S D + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 673
DA R D+ G K+ S+ A FS D + LATG H K ++ ++ K +
Sbjct: 101 DAHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733
+L+ I + +SP LA+ + D + ++D G L T GH+ + SL F P
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSP 216
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778
+ L+ + D DG I+ + + + + + W +N P
Sbjct: 217 DSQLLVTASD-DGYIKIYDVQHANLAGT--LSGHASWVLNVAFCP 258
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS D +LL T D ++ L H+S + +V F P +SS DK+V+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
VWD + TF H V + ++ N ++ D D EI
Sbjct: 274 VWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIH 315
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS 672
RDA R D+ G + + + V C + DG+ + +G +D +W +T
Sbjct: 217 RDATLRVWDIETGQCL---HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
L+ H++ + ++F + + S D ++RVWD + G + T GH + ++
Sbjct: 272 LHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMEL- 327
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
KD+++ S + D ++ W I G C + +
Sbjct: 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
+ C F G + +G D +W T K L H+ + + ++ + + S
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760
D+T++VW+A+ G + T GH+++V + H + + S D +R W I G C
Sbjct: 178 DRTLKVWNAET-GECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLH 233
Query: 761 VF 762
V
Sbjct: 234 VL 235
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
++++ T++V F DG + +G D +W +T L H SL + + +
Sbjct: 273 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 330
Query: 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEI 748
+ L + + D TV++WD G L+T G H ++V L F NK+ +I S D DG +
Sbjct: 331 I--LVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSD-DGTV 384
Query: 749 RYWSINNGSCTR 760
+ W + G R
Sbjct: 385 KLWDLKTGEFIR 396
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711
++ +G D+ +W+ +T + L H+S + + R+ + S D T+RVWD +
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIET 228
Query: 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
G L MGH A+V + + + + S D ++ W +C +
Sbjct: 229 -GQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTLQ 276
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+C + D +++ TG D +W +T + L H + +RF+ M + T
Sbjct: 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVT 228
Query: 698 SSFDKTVRVWDADNPG-YSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
S D+++ VWD +P +L R +GH A+V +DF D I S GD I+ W N
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NT 283
Query: 756 GSCTRV 761
+C V
Sbjct: 284 STCEFV 289
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEE 678
D + K ++ V A T++V C F+ + +LATG DK LW LK K + E
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 679 HSSLITDVRFSPSMPR-LATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSA 724
H I V +SP LA+S D+ + VWD D P L GH+A
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 725 SVMSLDFHPNKDDLICSCDGDGEIRYW 751
+ ++PN+ +ICS D + W
Sbjct: 378 KISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 652 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 707
L + D+K +W T T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D N L TF H + + + P+ + ++ S D + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S G ++ +G +D ++W +K L H+ I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
WD +N G + T GH+A V L D + S DG IR W N+ S
Sbjct: 337 WDLEN-GELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 673 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731
+T L H +S+IT ++F + + T + DK +RV+D+ N + L+ GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775
++ S D +R W I G CT VF+ + C++ +
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLIT 684
F+ ++ ++V ++ G LLAT DK +W D + + L H+ +
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 685 DVRFSPSMPRLATSSFDKTVRVW-DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743
V + PS LA++S+D TV+++ + ++ T GH ++V SL F P+ L SC
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCS 213
Query: 744 GDGEIRYW 751
D +R W
Sbjct: 214 DDRTVRIW 221
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 650 GKLLATGGHDKKAVLWHT--DTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRV 706
G LLA+ G D++ +W T D+ K+ L E H + V +SP LA++SFD T +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 707 WDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
W + + + T GH V S+ + P+ +L+ +C D + W ++
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDE 136
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 646 FSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
+S G LA+ D +W + D + T LE H + + V ++PS LAT S DK+
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 704 VRVWDAD--NPGYSLRTFMGHSASVMSLDFHPNKDDL 738
V VW+ D + + H+ V + +HP+++ L
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD------NPGYSLRTFM--GHSASVMSLD 730
HS I D+ + LAT+ D +RV+ D P +SL + HS V +
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 731 FHPNKDDLICSCDGDGEIRYW 751
++P + L+ SC DGE+ +W
Sbjct: 311 WNPKEPGLLASCSDDGEVAFW 331
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HT 667
T RD +V + ++ + + + T V + +LLA+ +D L+
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 668 DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713
D LE H S + + F PS RLA+ S D+TVR+W PG
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW------HTDTLKSKTN 675
V F+ + ++V + V+ C ++ G +A GG D K ++ + + K +
Sbjct: 90 VWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
+ H++ ++ F+ S ++ T+S D T +WD ++ G L++F GH A V+ LD P++
Sbjct: 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSE 208
Query: 736 D-DLICSCDGDGEIRYWSINNGSCTRVFK 763
+ S D + W + +G C + F+
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S G +GG DKKA++W + + E H S + VR+ PS A+ S D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 707 WD 708
+D
Sbjct: 267 YD 268
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
FS G+LL G +D +W D LK + L H + ++ +R SP + S+D T
Sbjct: 292 FSLSGRLLFAGYNDYTINVW--DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 704 VRVW 707
+RVW
Sbjct: 350 LRVW 353
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
SV T+ + C F++ + T D LW ++ + + H + + + +PS
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 693 P--RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750
+ DK VWD G ++ F H + V S+ ++P+ D D D R
Sbjct: 209 TGNTFVSGGCDKKAMVWDM-RSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRL 266
Query: 751 WSINNGSCTRVFKVESF 767
+ + ++ ES
Sbjct: 267 YDLRADREVAIYSKESI 283
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 44/171 (25%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATSSFDK 702
C S ++ +G DK A +W +L NL+ H++ + D + S S + T+S DK
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 703 TVRVWDAD---------------------------------------NPGYSLRTFMGHS 723
T+++W D + G LRT+ GH
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 724 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774
+ V + PN D I SC D +R WS NGS +V + + W V+
Sbjct: 226 SFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC 274
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSM--PR 694
T V+ FS D + + +GG D +W+ T + H+ ++ VRFSPS+ P
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
+ + +D V+VWD G + GH+ V S+ P+ L S D DG R W +
Sbjct: 169 IVSGGWDNLVKVWDLAT-GRLVTDLKGHTNYVTSVTVSPDG-SLCASSDKDGVARLWDLT 226
Query: 755 NG 756
G
Sbjct: 227 KG 228
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
LE HS+ ++DV S + ++S+D ++R+W+ N G F+GH+ V+S+ F P+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDN 121
Query: 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW--CVN---AMNRPCL----WDKL 784
++ S D +R W++ G C + W CV +++ P + WD L
Sbjct: 122 RQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 636 ASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693
A T V C FS D ++ +GG D +W T + T+L+ H++ +T V SP
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
A+S D R+WD G +L + M A + + F PN+ +C+ G IR + +
Sbjct: 210 LCASSDKDGVARLWDL-TKGEAL-SEMAAGAPINQICFSPNR-YWMCAATEKG-IRIFDL 265
Query: 754 NN 755
N
Sbjct: 266 EN 267
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
S++G + D LW+ + + H+ + V FSP ++ + D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNG 756
VW+ + H+ V + F P+ D +I S D ++ W + G
Sbjct: 135 VWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 750 YWSI 753
WS+
Sbjct: 167 VWSL 170
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 641 VICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLA 696
V+C F+ D A+G D+ +W L +E D P P +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T+S D T+++WD + T GH ++V FHP +I S DG ++ W+ +
Sbjct: 203 TASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260
Query: 757 SCTRVFKVESFCCWCV 772
+ V WC+
Sbjct: 261 KVEKTLNVGLERSWCI 276
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 653 LATGGHDKKAVLWH-TDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD-- 708
+ +G D LW+ + + E H + V F+P P A+ D+TV+VW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 709 ADNPGYSLRTFMGHSASVMSLDFH--PNKDDLICSCDGDGEIRYWSINNGSCT 759
P ++L T G V +D++ P+K +I + D D I+ W SC
Sbjct: 172 QSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCV 221
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S G ++ +G +D ++W K L H+ I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
WD +N G T GH+A V L D + S DG IR W N+ S
Sbjct: 337 WDLEN-GELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 673 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731
+T L H +S+IT ++F + + T + DK +RV+D+ N + L+ GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775
++ S D +R W I G CT VF+ + C++ +
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 750 YWSI 753
WS+
Sbjct: 167 VWSL 170
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 641 VICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLA 696
V+C F+ D A+G D+ +W L +E D P P +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T+S D T+++WD + T GH ++V FHP +I S DG ++ W+ +
Sbjct: 203 TASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260
Query: 757 SCTRVFKVESFCCWCV 772
+ V WC+
Sbjct: 261 KVEKTLNVGLERSWCI 276
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 653 LATGGHDKKAVLWH-TDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD-- 708
+ +G D LW+ + + E H + V F+P P A+ D+TV+VW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 709 ADNPGYSLRTFMGHSASVMSLDFH--PNKDDLICSCDGDGEIRYWSINNGSCT 759
P ++L T G V +D++ P+K +I + D D I+ W SC
Sbjct: 172 QSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCV 221
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 750 YWSI 753
WS+
Sbjct: 167 VWSL 170
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 641 VICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLA 696
V+C F+ D A+G D+ +W L +E D P P +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T+S D T+++WD + T GH ++V FHP +I S DG ++ W+ +
Sbjct: 203 TASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260
Query: 757 SCTRVFKVESFCCWCV 772
+ V WC+
Sbjct: 261 KVEKTLNVGLERSWCI 276
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 653 LATGGHDKKAVLWH-TDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD-- 708
+ +G D LW+ + + E H + V F+P P A+ D+TV+VW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 709 ADNPGYSLRTFMGHSASVMSLDFH--PNKDDLICSCDGDGEIRYWSINNGSCT 759
P ++L T G V +D++ P+K +I + D D I+ W SC
Sbjct: 172 QSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCV 221
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 750 YWSI 753
WS+
Sbjct: 167 VWSL 170
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 641 VICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLA 696
V+C F+ D A+G D+ +W L +E D P P +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T+S D T+++WD + T GH ++V FHP +I S DG ++ W+ +
Sbjct: 203 TASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260
Query: 757 SCTRVFKVESFCCWCV 772
+ V WC+
Sbjct: 261 KVEKTLNVGLERSWCI 276
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 653 LATGGHDKKAVLWH-TDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD-- 708
+ +G D LW+ + + E H + V F+P P A+ D+TV+VW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 709 ADNPGYSLRTFMGHSASVMSLDFH--PNKDDLICSCDGDGEIRYWSINNGSCT 759
P ++L T G V +D++ P+K +I + D D I+ W SC
Sbjct: 172 QSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCV 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSK-------TNLEEHSSLITDVRFSPSMPRLATSSFD 701
D +L +G DK ++W + L H+ ++D+ S +SS+D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
KT+R+WD G + + F+GH + V S+ F P+ I S + EI+ W+I
Sbjct: 98 KTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNI 147
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLK 671
D R D+ G ++K S+V FS D + + + G +++ LW+ +
Sbjct: 97 DKTLRLWDLRTGTTYKR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 672 SKTNLEEHSSLITDVRFSPSM----------PRLATSSFDKTVRVWDADNPGYSLR-TFM 720
S E HS ++ VR+SP M P A+ +D ++VW N + +R TF
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW---NTNFQIRYTFK 210
Query: 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
H ++V L PN I + D ++ W I N
Sbjct: 211 AHESNVNHLSISPN-GKYIATGGKDKKLLIWDILN 244
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+F+ + +A S V S +GK +ATGG DKK ++W L + S I +
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 687 RFSPSMPRLATSSFDKTVRVWD 708
F+P + +A + D+ V++++
Sbjct: 262 AFNPKLQWVAVGT-DQGVKIFN 282
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712
A+ G D + +W+T+ + + + H S + + SP+ +AT DK + +WD N
Sbjct: 187 FASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
Query: 713 GYSLRTFMGHSASVMSLDFHP 733
Y R F S ++ + F+P
Sbjct: 246 TYPQREFDAGS-TINQIAFNP 265
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 736
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 737 DLICSCDGDGEIRYWSINNGSCTRV 761
++ SC DG++ W NG +++
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI 92
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 699
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 700 FDKTVRVWDADN 711
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 736
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 737 DLICSCDGDGEIRYWSINNGSCTRV 761
++ SC DG++ W NG +++
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQI 94
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 699
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 700 FDKTVRVWDADN 711
D+T +W DN
Sbjct: 229 QDRTCIIWTQDN 240
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 736
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 737 DLICSCDGDGEIRYWSINNGSCTRV 761
++ SC DG++ W NG +++
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI 92
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 699
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 700 FDKTVRVWDADN 711
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 736
H+ +I D R+AT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 737 DLICSCDGDGEIRYWSINNGSCTRV 761
++ SC DG++ W NG +++
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQI 92
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 699
+ + + TGG D +W + T ++ LE HS + DV +SP++ +A+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 700 FDKTVRVWDADN 711
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + VMS+D K +I S D I+ W+I G C
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQC 140
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--- 185
Query: 759 TRVFKVES 766
F++E+
Sbjct: 186 ---FQIEA 190
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + +LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 262
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSI 753
+ D P Y LR F G+S + P+ L S DG D IR W +
Sbjct: 263 FSLD-PQYLVDDLRPEFAGYSKAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPNR 249
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + VMS+D K +I S D I+ W+I G C
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQC 140
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--- 185
Query: 759 TRVFKVES 766
F++E+
Sbjct: 186 ---FQIEA 190
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + +LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 262
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSI 753
+ D P Y LR F G+S + P+ L S DG D IR W +
Sbjct: 263 FSLD-PQYLVDDLRPEFAGYSKAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPNR 249
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + VMS+D K +I S D I+ W+I G C
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQC 140
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--- 185
Query: 759 TRVFKVES 766
F++E+
Sbjct: 186 ---FQIEA 190
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 618 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TN 675
R DV+ G +++ S V+ ++ +G DK +W T+K +
Sbjct: 90 RLWDVATGETYQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLAT 143
Query: 676 LEEHSSLITDVRFSPSMP------RLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMS 728
L H+ ++ VR P+ + ++ DK V+ W+ + + + F+GH++++ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--FQIEADFIGHNSNINT 201
Query: 729 LDFHPNKDDLICSCDGDGEIRYWSI 753
L P+ LI S DGEI W++
Sbjct: 202 LTASPDGT-LIASAGKDGEIMLWNL 225
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPNR 249
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + +LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 262
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYW 751
+ D P Y LR F G+S + P+ L S DG D IR W
Sbjct: 263 FSLD-PQYLVDDLRPEFAGYSKAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + VMS+D K +I S D I+ W+I G C
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQC 140
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--- 185
Query: 759 TRVFKVES 766
F++E+
Sbjct: 186 ---FQIEA 190
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + +LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 262
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSI 753
+ D P Y LR F G+SA+ P+ L S DG D IR W +
Sbjct: 263 FSLD-PQYLVDDLRPEFAGYSAAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 225 LAAKKAMYTLSA----QDEVFSLAFSPNR 249
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + VMS+D K +I S D I+ W+I G C
Sbjct: 86 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQC 134
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 125 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--- 179
Query: 759 TRVFKVES 766
F++E+
Sbjct: 180 ---FQIEA 184
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + +LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 256
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSI 753
+ D P Y LR F G+S + P+ L S DG D IR W +
Sbjct: 257 FSLD-PQYLVDDLRPEFAGYSKAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 219 LAAKKAMYTLSA----QDEVFSLAFSPNR 243
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 660 KKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718
K A+ + T K+ T L H I+ + F+ + L ++S D T+R+W N G S
Sbjct: 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNC 284
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
F GHS S++S + DD + SC DG +R WS+
Sbjct: 285 FYGHSQSIVSASWVG--DDKVISCSMDGSVRLWSL 317
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD---LICSCDGDGEIRYWSINNGSC 758
++VW G L T +GH+ V + PN+ DD I S D ++ W++N
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ--- 185
Query: 759 TRVFKVES 766
F++E+
Sbjct: 186 ---FQIEA 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 652 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
WD G + + F+GH + V S+D K I S D I+ W+I G C
Sbjct: 92 WDV-ATGETYQRFVGHKSDVXSVDI-DKKASXIISGSRDKTIKVWTI-KGQC 140
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
D + + G+DK W+ + + + + H+S I + SP +A++ D + +W+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 709 --ADNPGYSLRTFMGHSASVMSLDFHPNK 735
A Y+L V SL F PN+
Sbjct: 225 LAAKKAXYTLSA----QDEVFSLAFSPNR 249
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706
S DG L+A+ G D + LW+ K+ L + + + FSP+ LA ++ ++V
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPNRYWLAAAT-ATGIKV 262
Query: 707 WDADNPGY---SLR-TFMGHSASVMSLDFHPNKDDLICSCDG--------DGEIRYWSI 753
+ D P Y LR F G+S + P+ L S DG D IR W +
Sbjct: 263 FSLD-PQYLVDDLRPEFAGYSKAA-----EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---- 713
HD + H TL HS + +R++P LA+ D V VW + PG
Sbjct: 225 HDVRVAEHHVATLSG------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGW 277
Query: 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKVESFCC 769
L+TF H +V ++ + P + +++ + G D IR W++ +G+C S C
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 335
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 663 VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
V+W T+ L+ H+S + + SP +A+++ D+T+R+W
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T + CC F D +++ + G D LW +T + T H+ + + +P +
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ D + ++WD G +TF GH + + ++ F PN
Sbjct: 202 GACDASAKLWDV-REGMCRQTFTGHESDINAICFFPN 237
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSS 681
++ + +++ +S V+ C ++ G +A GG D +++ T ++ L H+
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741
++ RF ++ TSS D T +WD + + GH+ VMSL P+ L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDT-RLFVS 201
Query: 742 CDGDGEIRYWSINNGSCTRVF 762
D + W + G C + F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 742
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 743 DGDGEIRYWSI 753
GD W I
Sbjct: 161 SGDTTCALWDI 171
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+ + D +L +G D A LW + H S I + F P+ AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 698 SSFDKTVRVWD 708
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 736
H+ I D R AT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 737 DLICSCDGDGEIRYWSINNGSCTRV 761
++ SC DG++ W NG +++
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQI 92
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 699
+ + + TGG D +W + T ++ LE HS + DV +SP++ A+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 700 FDKTVRVWDADN 711
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T + CC F D +++ + G D LW +T + T H+ + + +P +
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ D + ++WD G +TF GH + + ++ F PN
Sbjct: 202 GACDASAKLWDV-REGMCRQTFTGHESDINAICFFPN 237
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSS 681
++ + +++ +S V+ C ++ G +A GG D +++ T ++ L H+
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741
++ RF ++ TSS D T +WD + + GH+ VMSL P+ L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDT-RLFVS 201
Query: 742 CDGDGEIRYWSINNGSCTRVF 762
D + W + G C + F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 742
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 743 DGDGEIRYWSI 753
GD W I
Sbjct: 161 SGDTTCALWDI 171
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+ + D +L +G D A LW + H S I + F P+ AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 698 SSFDKTVRVWD 708
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T + CC F D +++ + G D LW +T + T H+ + + +P +
Sbjct: 154 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 212
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ D + ++WD G +TF GH + + ++ F PN
Sbjct: 213 GACDASAKLWDV-REGMCRQTFTGHESDINAICFFPN 248
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSS 681
++ + +++ +S V+ C ++ G +A GG D +++ T ++ L H+
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741
++ RF ++ TSS D T +WD + + GH+ VMSL P+ L S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDT-RLFVS 212
Query: 742 CDGDGEIRYWSINNGSCTRVF 762
D + W + G C + F
Sbjct: 213 GACDASAKLWDVREGMCRQTF 233
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 113
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 742
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 171
Query: 743 DGDGEIRYWSI 753
GD W I
Sbjct: 172 SGDTTCALWDI 182
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+ + D +L +G D A LW + H S I + F P+ AT
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 698 SSFDKTVRVWD 708
S D T R++D
Sbjct: 255 GSDDATCRLFD 265
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T + CC F D +++ + G D LW +T + T H+ + + +P +
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ D + ++WD G +TF GH + + ++ F PN
Sbjct: 202 GACDASAKLWDV-REGMCRQTFTGHESDINAICFFPN 237
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSS 681
++ + +++ +S V+ C ++ G +A GG D +++ T ++ L H+
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741
++ RF ++ TSS D T +WD + + GH+ VMSL P+ L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDT-RLFVS 201
Query: 742 CDGDGEIRYWSINNGSCTRVF 762
D + W + G C + F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 742
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 743 DGDGEIRYWSI 753
GD W I
Sbjct: 161 SGDTTCALWDI 171
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+ + D +L +G D A LW + H S I + F P+ AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 698 SSFDKTVRVWD 708
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T + CC F D +++ + G D LW +T + T H+ + + +P +
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ D + ++WD G +TF GH + + ++ F PN
Sbjct: 202 GACDASAKLWDV-REGMCRQTFTGHESDINAICFFPN 237
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSS 681
++ + +++ +S V+ C ++ G +A GG D +++ T ++ L H+
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741
++ RF ++ TSS D T +WD + + GH+ VMSL P+ L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDT-RLFVS 201
Query: 742 CDGDGEIRYWSINNGSCTRVF 762
D + W + G C + F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 742
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 743 DGDGEIRYWSI 753
GD W I
Sbjct: 161 SGDTTCALWDI 171
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V+ + D +L +G D A LW + H S I + F P+ AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 698 SSFDKTVRVWD 708
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---- 713
HD + H TL HS + +R++P LA+ D V VW + PG
Sbjct: 214 HDVRVAEHHVATLSG------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGW 266
Query: 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKVESFCC 769
L+TF H +V ++ + P + +++ + G D IR W++ +G+C S C
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 324
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 663 VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
V+W T+ L+ H+S + + SP +A+++ D+T+R+W
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFMGHSASVMSLDFHP 733
+ H S IT ++F PS L +SS D +++W D NP RT +GH A+V +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAI-I 190
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVF 762
++ + S DG IR W G+ F
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694
+A S++ F G+ L + D + +W + L H + +TD+
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 695 LATSSFDKTVRVWDADNPGYSLRTF 719
+ ++S D T+R+W+ G ++ TF
Sbjct: 196 VLSASLDGTIRLWEC-GTGTTIHTF 219
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFMGHSASVMSLDFHP 733
+ H S IT ++F PS L +SS D +++W D NP RT +GH A+V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAI-I 187
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVF 762
++ + S DG IR W G+ F
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694
+A S++ F G+ L + D + +W + L H + +TD+
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 695 LATSSFDKTVRVWDADNPGYSLRTF 719
+ ++S D T+R+W+ G ++ TF
Sbjct: 193 VLSASLDGTIRLWEC-GTGTTIHTF 216
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---- 713
HD + H TL HS + +R++P LA+ D V VW + PG
Sbjct: 134 HDVRVAEHHVATLSG------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGW 186
Query: 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKVESFCC 769
L+TF H +V ++ + P + +++ + G D IR W++ +G+C S C
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 244
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
G + V+W T+ L+ H+S + + SP +A+++ D+T+R+W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 633 SVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWH-TDTLKS----KTNLEEHSSLITDV 686
++RA T V D ++ + DK +LW T K+ + L HS + DV
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
S + S+D +R+WD G S R F+GH+ V+S+ F + ++ S D
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDR 494
Query: 747 EIRYWSINNGSC 758
I+ W+ G C
Sbjct: 495 TIKLWN-TLGEC 505
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 641 VICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
V C FS + + + DK +W+ K ++ L H+ ++ V SP A+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
D V +WD G L + +S + +L F PN+ +C+ G I+ W + + S
Sbjct: 580 GKDGVVLLWDLAE-GKKLYSLEANSV-IHALCFSPNR-YWLCAATEHG-IKIWDLESKSI 635
Query: 759 TRVFKVE 765
KV+
Sbjct: 636 VEDLKVD 642
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
SSDG+ +G D + LW S H+ + V FS ++ ++S D+T++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 706 VWDA-DNPGYSL-RTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN 755
+W+ Y++ GH V + F PN I S D ++ W+++N
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 24/107 (22%)
Query: 670 LKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVW----DADNPGYSLRTFMGHS 723
L K + H+ ++T + +P + + ++S DK++ +W D G + R GHS
Sbjct: 372 LVLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 724 ASVMSLDFHPNKDDLICSCDG--------DGEIRYWSINNGSCTRVF 762
V +D++ S DG DGE+R W + G TR F
Sbjct: 431 HFV---------EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF 468
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688
K +++ T V S DG L A+GG D +LW K +LE + S+I + F
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610
Query: 689 SPSMPRLATSSFDKTVRVWDADN 711
SP+ L ++ + +++WD ++
Sbjct: 611 SPNRYWLCAAT-EHGIKIWDLES 632
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 647 SSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 704
S ++ A G G ++ ++ DT S NL + + V F PS P R+ + S D TV
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172
Query: 705 RVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
+++ P + + TF H+ V S+ ++P+ L S GDG I ++ +G+ T VF+
Sbjct: 173 AIFEG--PPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFE 229
Query: 764 VESF 767
+S
Sbjct: 230 DDSL 233
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRL 695
+++ FS++G L +K + + L + H++ + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 696 ATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
AT S D +V VW+ + P + + H+ S ++ N + I S D I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 609
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DA 709
+ +G D ++ K K+ EH+ + VR++P A++ D T+ ++ D
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 710 DNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
G SL+ + HS SV L + P+ I S D I+ W++
Sbjct: 223 TKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWNV 268
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 52/191 (27%)
Query: 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--- 678
+ +G FK ++ T V ++ DG L A+ G D VL++ +KT + E
Sbjct: 174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN-GVDGTKTGVFEDDS 232
Query: 679 -----HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD----------------------- 710
HS + + +SP ++A++S DKT+++W+
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 711 -----------------NP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
NP G + GH+ ++ +L + L S D +G I W
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSW 351
Query: 752 SINNGSCTRVF 762
I+ G RVF
Sbjct: 352 DISTGISNRVF 362
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
V+ F NS T+KV C +S D LATG D ++W+
Sbjct: 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 644 CHFSSDGKL-LATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSF 700
C + D + L TG D+ VLW T + S E S DV S S+ L + F
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSLNANMF 221
Query: 701 -----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
D TVR+WD ++RT+ GH + S+ F P+ D DG R + +
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-DGTCRLFDMRT 280
Query: 756 GSCTRVFKVE 765
G +V+ E
Sbjct: 281 GHQLQVYNRE 290
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------ 675
V + ++ ++++ V+ C F+ +G+ +A GG D +++ + +
Sbjct: 92 VWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR 151
Query: 676 -LEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMS 728
L H + ++ P RL T S D+T +WD G + F GH+A V+S
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLS 210
Query: 729 LDFHPNKDDLICSCDGDGEIRYWSI 753
L + ++ S D +R W +
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDL 235
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
+++ + KV ++ + + + D + ++W+ T + ++ H + + F+P+
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 693 PRLATSSFDKTVRVWD----ADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
+A D +++ AD G R GH S + P+++ + + GD
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 747 EIRYWSINNGSCTRVFKVE 765
W + G +F E
Sbjct: 181 TCVLWDVTTGQRISIFGSE 199
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 682 LITDV-RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740
L TDV ++S + R A S F+ T V RT GHS V SLD+ P K + I
Sbjct: 33 LDTDVEKYSKAQGRTAVS-FNPTDLV--------CCRTLQGHSGKVYSLDWTPEK-NWIV 82
Query: 741 SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778
S DG + W+ T K+ C W + P
Sbjct: 83 SASQDGRLIVWNALTSQKTHAIKLH--CPWVMECAFAP 118
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFD 701
FS G+LL G + +W T + NL H I+ + S L T S+D
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365
Query: 702 KTVRVW 707
K +++W
Sbjct: 366 KNLKIW 371
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDF-HPNKD 736
H +I D + RLAT S D++V+++D N G L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 737 DLICSCDGDGEIRYWSINNGSCTR 760
+++ SC D ++ W NG+ +
Sbjct: 72 NILASCSYDRKVIIWREENGTWEK 95
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 651 KLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSM----PRLATSSFDKT 703
K A+GG D LW + K + LE HS + DV ++PS+ +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 704 VRVWDADN 711
V +W D+
Sbjct: 240 VFIWTCDD 247
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 650 GKLLATGGHDKKAV-LWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
G L+A+ D AV LW D + SK EH +++ V S + + S D +
Sbjct: 95 GILVAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+VWD L ++ H+A V + P+KD + SC D I W
Sbjct: 152 KVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVR 705
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765
+WD LR G ++ + SL P++ + +C R + + S RV+
Sbjct: 278 IWD-------LRQVRGKASFLYSL---PHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 766 SFCC 769
+ C
Sbjct: 328 QWDC 331
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVR 705
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765
+WD LR G ++ + SL P++ + +C R + + S RV+
Sbjct: 277 IWD-------LRQVRGKASFLYSL---PHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 766 SFCC 769
+ C
Sbjct: 327 QWDC 330
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVR 705
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765
+WD LR G ++ + SL P++ + +C R + + S RV+
Sbjct: 277 IWD-------LRQVRGKASFLYSL---PHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 766 SFCC 769
+ C
Sbjct: 327 QWDC 330
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------VRFSPSMPRLA----T 697
S+ L+ATG ++ + TL+ N E S+I + V+FSP LA +
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 698 SSFDKTV--------RVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDG 746
+SF R+ P +S + +G HS+ VMSL F+ + + L CS DG
Sbjct: 265 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDG 323
Query: 747 EIRYWSI 753
++R+W +
Sbjct: 324 KLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------VRFSPSMPRLA----T 697
S+ L+ATG ++ + TL+ N E S+I + V+FSP LA +
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 698 SSFDKTV--------RVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDG 746
+SF R+ P +S + +G HS+ VMSL F+ + + L CS DG
Sbjct: 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDG 313
Query: 747 EIRYWSI 753
++R+W +
Sbjct: 314 KLRFWDV 320
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 647 SSDGKLLAT--GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
S G L+A+ G + +L L +K EH ++ + + + D +V
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+VWD L+++ HS+ V + P KD + SC DG I W
Sbjct: 164 KVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 2/110 (1%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 706
SDG +GG D +W + HSS + V P + S D + +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 707 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
WD P + R F S+ +HP KDD D G + +I N
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760
+A+N S+ F HS+SV ++ F+ +D+++ S +GEI W +N CT
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTE 148
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%)
Query: 636 ASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRF 688
+S +VI ++ S + A+ G A +W K +L S ++ V +
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222
Query: 689 SP-SMPRLAT---SSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCD 743
P + R+AT S D ++ +WD N L+T GH ++SLD+ + L+ S
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778
D + W N S ++ + + WC P
Sbjct: 283 RDNTVLLW--NPESAEQLSQFPARGNWCFKTKFAP 315
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDK 702
CH D LL + G D +LW+ ++ + + + +F+P P L A +SFD
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 703 TVRV 706
+ V
Sbjct: 329 KIEV 332
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 679 HSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR------TFMGHSASVMSLDF 731
H++ + D+ + P +A+ S D TV VW+ + G L T GH+ V + +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGSCT 759
HP +++ S D I W + G+
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
GH+A V+ + + P+ D++I S D + W I +G
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 679 HSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR------TFMGHSASVMSLDF 731
H++ + D+ + P +A+ S D TV VW+ + G L T GH+ V + +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 732 HPNKDDLICSCDGDGEIRYWSINNGS 757
HP +++ S D I W + G+
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGA 165
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
GH+A V+ + + P+ D++I S D + W I +G
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
L H +T V+++ L + S D + VW + N G L T GH+ ++ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDV---- 82
Query: 736 DDLICSC---DGDGEIRYWSINNGSCTRVFK 763
D C D I+ W ++NG C +K
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 691 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 120 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 749 RYWSINNGSCTRVF 762
R W+I + +F
Sbjct: 177 RLWNIQTDTLVAIF 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 691 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 79 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 749 RYWSINNGSCTRVF 762
R W+I + +F
Sbjct: 136 RLWNIQTDTLVAIF 149
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 691 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 84 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 749 RYWSINNGSCTRVF 762
R W+I + +F
Sbjct: 141 RLWNIQTDTLVAIF 154
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 691 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 83 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 749 RYWSINNGSCTRVF 762
R W+I + +F
Sbjct: 140 RLWNIQTDTLVAIF 153
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 691 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 83 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 749 RYWSINNGSCTRVF 762
R W+I + +F
Sbjct: 140 RLWNIQTDTLVAIF 153
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+AT D + +WD + H A + + FHP+ + + +C DG + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 637 STSKVICCHFSSDGKLLATGGHDKKAVLW---HTDTLKSKTNLEEHSSLITDVRFSPSMP 693
S S C + + T G D + L+ H + +++ N + SS + V F + P
Sbjct: 147 SYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNAD--SSTLHAVTFLRT-P 203
Query: 694 RLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750
+ T + +++WD G + + G + +D HPN+ ++ + DG +
Sbjct: 204 EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 751 WSINNGS 757
W + G+
Sbjct: 264 WDVRQGT 270
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
+++ +S+V + SDG LA+GG+D +W + K H++ + V + P
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 693 PRLATS---SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGE 747
L + + DK + W+A G + T S V SL + P+ + I S G D
Sbjct: 272 SNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGS-QVTSLIWSPHSKE-IMSTHGFPDNN 328
Query: 748 IRYWSINNGSCTR 760
+ WS ++ T+
Sbjct: 329 LSIWSYSSSGLTK 341
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---TLKSKTNLEEHSS 681
G +K A + V C ++ + T D+ A ++ T K L +
Sbjct: 42 GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101
Query: 682 LITDVRFSPSMPRLATSSFDKTVRV---------WDADNPGYSLRTFMGHSASVMSLDFH 732
T VR+SP+ + A S + + V W + + LR+ +++SLD+H
Sbjct: 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWH 155
Query: 733 PNKDDLICSC 742
PN L C
Sbjct: 156 PNNVLLAAGC 165
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSF 700
C S+DG L TGG D W L+ L++H +S I + + P+ LA
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSW---DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244
Query: 701 DKTVRVWDADNP-GYSLRTFMGHSASVMSLDF 731
V V + P Y L H + V+SL F
Sbjct: 245 SSNVEVLHVNKPDKYQLHL---HESCVLSLKF 273
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 672 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLD 730
S+ + + I + P L T+ +WD P ++ + SA + +L
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 731 FHPNKDDLIC-SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776
P D +C SC DG I W ++N + R F+ + C++ N
Sbjct: 149 ISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRL 695
T V+ +S DG + T DK A +W + ++ + +H + + + + +P+ +
Sbjct: 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 696 ATSSFDKTVRVWD--ADNPGYSLR 717
T S+DKT++ WD + NP L+
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 703
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 704 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYW 751
V++W+ D L T S+ S+ F P L +C G DG +R +
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 137
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 703
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 704 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYW 751
V++W+ D L T S+ S+ F P L +C G DG +R +
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPR---LATSSF 700
+ D + + DK +W T+TL++ N EE + SP + +A +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTR 164
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
V++ D + G GH ++++ + P D ++ + D ++ W + S
Sbjct: 165 GPKVQLCDLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDAD 710
L+A G K L + L+ H I V +SP LAT+S D V++WD
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 711 NPGYSLRTFMGH----SASVMSLDF-HPNKDDLIC-SCDG--------DGEIRYWSINNG 756
L T H S +V S + H K + +C + DG D +R W+ +NG
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 757 SCTRV 761
T V
Sbjct: 278 ENTLV 282
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 703
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 704 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYW 751
V++W+ D L T S+ S+ F P L +C G DG +R +
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684
G + + + ++ +V ++ D + T G D+ A +W TLK +T L
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW---TLKGRTWKPTLVILRI 95
Query: 685 D-----VRFSPSMPRLATSSFDKTVRV--WDADNPGYSLRTFMG-HSASVMSLDFHPNKD 736
+ VR++P+ + A S + + + ++ +N + + ++V+SLD+HPN
Sbjct: 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 737 DLIC-SCDGDGEI 748
L SCD I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684
G + + + ++ +V ++ D + T G D+ A +W TLK +T L
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVW---TLKGRTWKPTLVILRI 95
Query: 685 D-----VRFSPSMPRLATSSFDKTVRV--WDADNPGYSLRTFMG-HSASVMSLDFHPNKD 736
+ VR++P+ + A S + + + ++ +N + + ++V+SLD+HPN
Sbjct: 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 737 DLIC-SCDGDGEI 748
L SCD I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 693 PRLATSSFDKTVRVWD---ADNPGYSLRTFMGHSA----SVMSLDFHPNKDDLICSCDGD 745
P + T S D TV+VWD D+P ++ G + +V + + ++ ++C+ +
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189
Query: 746 GEIRYWSINN 755
G+I+ + + N
Sbjct: 190 GDIKLFDLRN 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,059,552
Number of Sequences: 62578
Number of extensions: 813189
Number of successful extensions: 2432
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1760
Number of HSP's gapped (non-prelim): 415
length of query: 847
length of database: 14,973,337
effective HSP length: 107
effective length of query: 740
effective length of database: 8,277,491
effective search space: 6125343340
effective search space used: 6125343340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)