Query 003106
Match_columns 847
No_of_seqs 931 out of 4397
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.2E-31 1.1E-35 272.2 24.8 273 553-843 157-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-31 5.6E-36 278.2 19.6 278 548-843 170-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.4E-30 5.3E-35 267.2 21.4 234 600-846 118-398 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-30 1.8E-34 266.9 18.9 236 599-846 177-419 (459)
5 KOG0279 G protein beta subunit 100.0 4.4E-28 9.5E-33 242.3 29.6 287 552-847 14-315 (315)
6 KOG0284 Polyadenylation factor 100.0 1.3E-29 2.8E-34 264.2 15.7 273 553-844 96-379 (464)
7 KOG0263 Transcription initiati 100.0 1.5E-28 3.3E-33 275.7 22.1 267 554-845 379-649 (707)
8 KOG0286 G-protein beta subunit 100.0 4.5E-27 9.7E-32 236.2 28.1 276 552-843 54-343 (343)
9 KOG0285 Pleiotropic regulator 100.0 1.1E-27 2.5E-32 245.7 22.5 280 552-844 150-438 (460)
10 KOG0266 WD40 repeat-containing 100.0 1.4E-26 3E-31 265.9 32.5 280 553-846 159-455 (456)
11 KOG0645 WD40 repeat protein [G 100.0 3.9E-26 8.6E-31 227.4 27.6 278 555-845 16-311 (312)
12 KOG0266 WD40 repeat-containing 99.9 3.7E-25 8.1E-30 254.0 34.1 237 602-846 164-410 (456)
13 KOG0285 Pleiotropic regulator 99.9 4.3E-26 9.3E-31 234.1 21.8 222 610-845 168-389 (460)
14 KOG0645 WD40 repeat protein [G 99.9 1.9E-25 4.2E-30 222.5 25.7 220 610-844 32-260 (312)
15 KOG0279 G protein beta subunit 99.9 1.7E-25 3.6E-30 223.9 23.0 225 610-846 33-263 (315)
16 KOG0286 G-protein beta subunit 99.9 5.4E-25 1.2E-29 221.3 26.6 234 555-793 99-343 (343)
17 KOG0276 Vesicle coat complex C 99.9 3.1E-25 6.7E-30 241.6 23.7 271 555-841 15-295 (794)
18 KOG0284 Polyadenylation factor 99.9 2.1E-26 4.7E-31 240.3 14.1 223 610-845 113-337 (464)
19 KOG0281 Beta-TrCP (transducin 99.9 1.3E-26 2.9E-31 236.6 12.2 216 610-846 212-429 (499)
20 KOG0295 WD40 repeat-containing 99.9 4.5E-25 9.8E-30 227.7 23.4 276 553-844 108-405 (406)
21 KOG0281 Beta-TrCP (transducin 99.9 3.6E-26 7.7E-31 233.5 14.8 270 555-845 197-477 (499)
22 PLN00181 protein SPA1-RELATED; 99.9 4.6E-24 1E-28 262.3 36.5 282 552-844 482-792 (793)
23 KOG0263 Transcription initiati 99.9 1.2E-25 2.5E-30 252.6 19.3 193 600-797 454-651 (707)
24 KOG0276 Vesicle coat complex C 99.9 2.8E-25 6E-30 241.9 21.4 227 610-847 30-259 (794)
25 KOG0295 WD40 repeat-containing 99.9 6E-25 1.3E-29 226.8 22.3 233 551-794 148-405 (406)
26 KOG0277 Peroxisomal targeting 99.9 3E-25 6.5E-30 219.1 18.5 227 610-845 78-309 (311)
27 KOG0319 WD40-repeat-containing 99.9 5.1E-25 1.1E-29 244.7 22.4 273 557-846 327-620 (775)
28 cd00200 WD40 WD40 domain, foun 99.9 1.7E-23 3.6E-28 221.2 32.0 273 552-843 8-289 (289)
29 KOG0315 G-protein beta subunit 99.9 7.7E-24 1.7E-28 208.6 26.3 255 574-845 22-288 (311)
30 KOG0273 Beta-transducin family 99.9 3.3E-24 7.1E-29 227.6 25.1 280 552-845 177-523 (524)
31 KOG0316 Conserved WD40 repeat- 99.9 4.5E-24 9.7E-29 208.6 22.0 275 553-845 17-299 (307)
32 KOG0275 Conserved WD40 repeat- 99.9 1.4E-24 2.9E-29 220.0 18.5 275 556-843 216-507 (508)
33 KOG0318 WD40 repeat stress pro 99.9 2.6E-23 5.7E-28 223.2 29.1 279 550-846 56-351 (603)
34 PTZ00420 coronin; Provisional 99.9 5.1E-23 1.1E-27 237.2 33.1 225 610-845 49-293 (568)
35 KOG0283 WD40 repeat-containing 99.9 5.9E-24 1.3E-28 241.0 24.4 284 549-844 263-575 (712)
36 KOG0265 U5 snRNP-specific prot 99.9 1.4E-23 3.1E-28 211.9 24.3 274 552-843 46-336 (338)
37 PTZ00421 coronin; Provisional 99.9 6.3E-23 1.4E-27 235.3 32.3 207 632-846 69-291 (493)
38 KOG0315 G-protein beta subunit 99.9 1.4E-23 3E-28 206.8 22.6 226 610-847 15-247 (311)
39 KOG0273 Beta-transducin family 99.9 2.7E-23 5.8E-28 220.7 25.6 235 550-794 273-522 (524)
40 KOG0291 WD40-repeat-containing 99.9 7.6E-23 1.7E-27 227.4 30.3 282 554-846 308-613 (893)
41 KOG0319 WD40-repeat-containing 99.9 5.5E-24 1.2E-28 236.6 20.5 237 555-795 367-619 (775)
42 KOG0275 Conserved WD40 repeat- 99.9 2.2E-24 4.7E-29 218.5 13.5 236 601-844 217-466 (508)
43 KOG0301 Phospholipase A2-activ 99.9 3.3E-23 7.2E-28 228.9 22.8 267 553-845 14-288 (745)
44 KOG0292 Vesicle coat complex C 99.9 5.7E-23 1.2E-27 231.1 24.8 270 556-844 12-320 (1202)
45 KOG0306 WD40-repeat-containing 99.9 7.2E-23 1.6E-27 227.5 23.9 275 552-845 372-664 (888)
46 KOG0316 Conserved WD40 repeat- 99.9 7.7E-23 1.7E-27 200.0 20.7 220 610-845 34-257 (307)
47 KOG0293 WD40 repeat-containing 99.9 3.7E-23 8E-28 216.1 19.3 281 550-845 221-513 (519)
48 KOG0265 U5 snRNP-specific prot 99.9 4.9E-23 1.1E-27 208.1 19.5 208 630-847 39-248 (338)
49 KOG0277 Peroxisomal targeting 99.9 8.7E-23 1.9E-27 201.8 19.9 224 614-845 37-265 (311)
50 KOG0318 WD40 repeat stress pro 99.9 1.1E-21 2.5E-26 210.7 29.0 227 555-793 105-390 (603)
51 KOG0291 WD40-repeat-containing 99.9 1.2E-21 2.6E-26 217.9 28.4 222 610-844 325-549 (893)
52 KOG0274 Cdc4 and related F-box 99.9 4.5E-22 9.7E-27 228.6 25.9 220 610-847 223-443 (537)
53 KOG0640 mRNA cleavage stimulat 99.9 1.5E-22 3.3E-27 204.5 19.1 282 552-845 111-426 (430)
54 KOG0313 Microtubule binding pr 99.9 3.8E-22 8.3E-27 207.1 21.9 226 610-846 120-377 (423)
55 KOG0274 Cdc4 and related F-box 99.9 7E-22 1.5E-26 227.1 26.1 247 575-846 231-483 (537)
56 KOG0296 Angio-associated migra 99.9 1.6E-21 3.5E-26 201.7 26.0 277 551-845 62-398 (399)
57 KOG0299 U3 snoRNP-associated p 99.9 2.5E-22 5.5E-27 213.1 20.6 243 600-845 145-410 (479)
58 PLN00181 protein SPA1-RELATED; 99.9 1.6E-21 3.4E-26 239.9 30.9 263 572-845 458-738 (793)
59 KOG0282 mRNA splicing factor [ 99.9 5.8E-23 1.3E-27 219.1 15.0 222 610-843 232-503 (503)
60 KOG0310 Conserved WD40 repeat- 99.9 6.3E-22 1.4E-26 211.7 22.3 270 553-842 26-306 (487)
61 KOG0313 Microtubule binding pr 99.9 1E-21 2.2E-26 203.9 22.5 264 565-845 115-418 (423)
62 KOG0296 Angio-associated migra 99.9 2.8E-21 6.1E-26 200.0 25.1 149 610-763 81-229 (399)
63 KOG0292 Vesicle coat complex C 99.9 2.6E-21 5.6E-26 217.9 26.6 235 550-794 48-320 (1202)
64 KOG0282 mRNA splicing factor [ 99.9 8.1E-23 1.8E-27 218.0 12.6 164 629-794 205-371 (503)
65 KOG0278 Serine/threonine kinas 99.9 6.9E-22 1.5E-26 194.8 16.0 221 610-845 76-297 (334)
66 KOG0308 Conserved WD40 repeat- 99.9 1.6E-21 3.5E-26 214.1 19.6 267 563-845 35-327 (735)
67 cd00200 WD40 WD40 domain, foun 99.9 4.8E-20 1E-24 194.6 30.3 224 610-846 26-250 (289)
68 KOG0264 Nucleosome remodeling 99.9 7.9E-21 1.7E-25 202.2 21.7 230 610-845 142-404 (422)
69 KOG0310 Conserved WD40 repeat- 99.9 3.7E-21 8E-26 205.9 19.0 223 613-847 46-270 (487)
70 KOG0639 Transducin-like enhanc 99.9 4.8E-21 1E-25 204.1 19.3 282 550-846 416-705 (705)
71 KOG0269 WD40 repeat-containing 99.9 7E-21 1.5E-25 212.8 21.1 225 610-841 105-336 (839)
72 KOG0283 WD40 repeat-containing 99.9 5E-21 1.1E-25 217.3 20.2 208 633-844 261-531 (712)
73 KOG0305 Anaphase promoting com 99.9 2.3E-20 4.9E-25 207.3 24.8 269 557-846 181-462 (484)
74 KOG0264 Nucleosome remodeling 99.9 1.3E-20 2.7E-25 200.7 21.5 186 610-795 195-404 (422)
75 KOG0294 WD40 repeat-containing 99.9 3E-20 6.6E-25 189.1 22.8 222 610-846 58-282 (362)
76 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-18 3.1E-23 177.8 32.5 273 553-844 14-302 (311)
77 PTZ00421 coronin; Provisional 99.9 3E-19 6.5E-24 205.0 31.2 184 612-796 95-291 (493)
78 KOG1332 Vesicle coat complex C 99.9 2.3E-20 5E-25 183.8 18.2 231 610-845 28-286 (299)
79 KOG0300 WD40 repeat-containing 99.9 4.2E-20 9E-25 187.2 20.3 212 629-846 263-477 (481)
80 KOG0293 WD40 repeat-containing 99.8 4.6E-20 1E-24 193.0 20.1 232 605-845 232-470 (519)
81 KOG0308 Conserved WD40 repeat- 99.8 1.1E-20 2.4E-25 207.6 15.8 229 610-847 42-287 (735)
82 KOG0772 Uncharacterized conser 99.8 4.1E-20 8.8E-25 198.1 19.6 283 552-843 166-485 (641)
83 KOG0640 mRNA cleavage stimulat 99.8 2.4E-20 5.2E-25 188.8 16.0 208 630-846 104-336 (430)
84 KOG0973 Histone transcription 99.8 3.9E-19 8.3E-24 206.7 27.5 286 551-844 11-354 (942)
85 KOG0288 WD40 repeat protein Ti 99.8 1.7E-20 3.7E-25 196.7 14.6 225 610-846 192-418 (459)
86 KOG0301 Phospholipase A2-activ 99.8 5E-20 1.1E-24 203.9 18.8 218 610-845 30-249 (745)
87 KOG0647 mRNA export protein (c 99.8 4E-19 8.7E-24 180.0 23.7 226 611-844 46-280 (347)
88 KOG0306 WD40-repeat-containing 99.8 1.2E-19 2.6E-24 202.2 21.8 230 557-795 416-664 (888)
89 KOG0289 mRNA splicing factor [ 99.8 1.5E-18 3.2E-23 183.1 26.8 224 610-844 278-505 (506)
90 KOG0643 Translation initiation 99.8 2.4E-18 5.2E-23 171.6 26.1 279 551-844 8-316 (327)
91 KOG0300 WD40 repeat-containing 99.8 1.2E-19 2.5E-24 184.0 16.9 223 610-845 165-428 (481)
92 KOG0267 Microtubule severing p 99.8 6.7E-21 1.5E-25 211.4 7.6 181 610-795 45-226 (825)
93 PTZ00420 coronin; Provisional 99.8 2.5E-18 5.3E-23 198.5 29.1 184 610-796 92-294 (568)
94 KOG0288 WD40 repeat protein Ti 99.8 1.4E-19 3.1E-24 189.9 17.0 274 551-843 173-459 (459)
95 KOG0646 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 187.4 21.5 222 616-846 62-308 (476)
96 KOG1408 WD40 repeat protein [F 99.8 7.6E-19 1.7E-23 193.9 22.1 274 558-844 329-712 (1080)
97 KOG0270 WD40 repeat-containing 99.8 6E-19 1.3E-23 187.0 19.5 231 611-847 198-451 (463)
98 KOG0639 Transducin-like enhanc 99.8 5.1E-19 1.1E-23 188.8 18.9 224 610-845 435-663 (705)
99 KOG0305 Anaphase promoting com 99.8 1.9E-18 4.2E-23 192.0 23.8 235 553-796 217-462 (484)
100 KOG0643 Translation initiation 99.8 4.1E-18 9E-23 169.9 23.4 205 633-846 5-221 (327)
101 KOG1407 WD40 repeat protein [F 99.8 8.8E-18 1.9E-22 167.2 25.5 274 554-844 21-310 (313)
102 KOG0267 Microtubule severing p 99.8 6.3E-20 1.4E-24 203.7 11.2 171 610-785 87-257 (825)
103 KOG4283 Transcription-coupled 99.8 4.2E-18 9.1E-23 171.7 22.6 202 551-757 41-279 (397)
104 KOG0289 mRNA splicing factor [ 99.8 1.7E-18 3.6E-23 182.7 20.3 222 610-843 236-460 (506)
105 KOG0278 Serine/threonine kinas 99.8 1.7E-19 3.7E-24 178.0 12.0 208 627-846 48-255 (334)
106 KOG0973 Histone transcription 99.8 1.7E-18 3.7E-23 201.3 22.3 154 610-765 30-212 (942)
107 KOG0294 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 176.4 19.0 204 627-845 32-237 (362)
108 KOG0299 U3 snoRNP-associated p 99.8 7.6E-18 1.7E-22 179.3 23.4 239 550-795 139-410 (479)
109 KOG2096 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 170.2 23.1 282 551-843 84-400 (420)
110 KOG0302 Ribosome Assembly prot 99.8 1.7E-18 3.7E-23 179.9 17.2 145 610-756 229-380 (440)
111 KOG0303 Actin-binding protein 99.8 2.8E-18 6.2E-23 179.1 18.8 209 629-845 72-294 (472)
112 KOG0269 WD40 repeat-containing 99.8 6.6E-19 1.4E-23 197.2 15.1 178 610-791 151-336 (839)
113 KOG1446 Histone H3 (Lys4) meth 99.8 1.8E-17 3.9E-22 169.8 23.9 166 628-797 4-172 (311)
114 KOG0302 Ribosome Assembly prot 99.8 9E-18 2E-22 174.6 20.7 227 612-844 172-437 (440)
115 KOG1036 Mitotic spindle checkp 99.8 2.5E-17 5.4E-22 167.9 23.0 222 613-846 33-263 (323)
116 KOG0641 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 155.4 26.3 285 551-844 30-348 (350)
117 KOG0772 Uncharacterized conser 99.8 6.2E-18 1.4E-22 181.5 17.3 213 629-847 158-396 (641)
118 KOG4283 Transcription-coupled 99.8 8.6E-17 1.9E-21 162.3 22.0 185 610-796 61-277 (397)
119 KOG0268 Sof1-like rRNA process 99.8 1.1E-17 2.4E-22 173.1 15.3 218 610-845 84-302 (433)
120 KOG0321 WD40 repeat-containing 99.8 4E-17 8.6E-22 179.6 20.2 228 610-845 117-391 (720)
121 KOG1274 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 182.9 24.2 235 550-796 10-263 (933)
122 KOG1007 WD repeat protein TSSC 99.7 1.7E-16 3.7E-21 159.9 22.3 288 543-844 29-360 (370)
123 KOG2048 WD40 repeat protein [G 99.7 3.2E-16 6.9E-21 173.9 26.4 272 555-844 27-318 (691)
124 KOG1332 Vesicle coat complex C 99.7 2.3E-17 5E-22 162.8 14.5 209 635-845 8-241 (299)
125 KOG0641 WD40 repeat protein [G 99.7 1.8E-15 4E-20 147.3 26.3 237 547-793 83-347 (350)
126 KOG0647 mRNA export protein (c 99.7 1.5E-16 3.3E-21 161.5 18.8 196 636-844 25-227 (347)
127 KOG2919 Guanine nucleotide-bin 99.7 1.7E-16 3.7E-21 162.2 18.9 230 563-793 121-367 (406)
128 KOG2048 WD40 repeat protein [G 99.7 1.1E-15 2.4E-20 169.7 26.3 221 611-844 43-274 (691)
129 KOG0646 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 169.5 19.1 212 555-773 83-326 (476)
130 KOG0270 WD40 repeat-containing 99.7 2.9E-16 6.3E-21 166.7 19.4 184 610-796 261-450 (463)
131 KOG0268 Sof1-like rRNA process 99.7 5.8E-17 1.2E-21 167.8 13.6 254 571-844 88-344 (433)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 8.8E-15 1.9E-19 158.0 31.5 252 573-846 12-280 (300)
133 KOG1034 Transcriptional repres 99.7 6.6E-16 1.4E-20 158.4 21.0 226 610-845 110-383 (385)
134 KOG1274 WD40 repeat protein [G 99.7 7.8E-16 1.7E-20 175.9 23.8 225 610-846 30-263 (933)
135 KOG4328 WD40 protein [Function 99.7 8.3E-16 1.8E-20 163.7 21.5 286 550-844 183-494 (498)
136 KOG4378 Nuclear protein COP1 [ 99.7 4.3E-16 9.4E-21 166.6 19.4 204 610-819 96-302 (673)
137 KOG0307 Vesicle coat complex C 99.7 5.8E-17 1.2E-21 189.4 13.7 228 610-845 85-327 (1049)
138 KOG2055 WD40 repeat protein [G 99.7 2E-15 4.2E-20 161.0 23.7 289 546-847 206-514 (514)
139 KOG0321 WD40 repeat-containing 99.7 3.5E-16 7.6E-21 172.2 17.5 229 611-846 70-348 (720)
140 KOG2445 Nuclear pore complex c 99.7 4.1E-15 8.9E-20 151.4 23.5 235 610-846 30-319 (361)
141 KOG1188 WD40 repeat protein [G 99.7 4E-16 8.6E-21 160.9 15.9 143 611-756 46-198 (376)
142 KOG1407 WD40 repeat protein [F 99.7 1.5E-15 3.3E-20 151.4 19.4 223 610-846 37-262 (313)
143 KOG1445 Tumor-specific antigen 99.7 2.7E-15 5.8E-20 164.2 22.4 230 610-846 598-845 (1012)
144 KOG2445 Nuclear pore complex c 99.7 3.8E-15 8.3E-20 151.7 21.0 210 635-846 10-257 (361)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.9E-14 6.3E-19 154.0 29.2 226 611-846 7-238 (300)
146 KOG2919 Guanine nucleotide-bin 99.7 1.7E-15 3.6E-20 155.0 18.0 234 559-795 55-327 (406)
147 KOG1063 RNA polymerase II elon 99.7 1E-15 2.2E-20 170.0 16.2 217 628-845 515-763 (764)
148 KOG1273 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 152.2 18.4 195 641-845 26-226 (405)
149 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-15 2.3E-20 166.8 15.6 129 629-758 285-430 (577)
150 KOG1063 RNA polymerase II elon 99.7 1.8E-14 3.8E-19 160.3 24.5 293 549-844 263-698 (764)
151 KOG1036 Mitotic spindle checkp 99.6 8.3E-15 1.8E-19 149.6 19.0 193 637-842 12-204 (323)
152 COG2319 FOG: WD40 repeat [Gene 99.6 4.2E-13 9.2E-18 149.0 34.3 282 551-846 63-360 (466)
153 KOG2106 Uncharacterized conser 99.6 1E-13 2.3E-18 149.1 27.4 270 557-845 204-521 (626)
154 KOG1408 WD40 repeat protein [F 99.6 1.3E-14 2.9E-19 160.8 21.0 235 551-795 457-713 (1080)
155 KOG0307 Vesicle coat complex C 99.6 1.7E-15 3.7E-20 177.3 14.2 240 555-795 66-327 (1049)
156 KOG1273 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 147.6 19.0 222 610-845 40-322 (405)
157 KOG4328 WD40 protein [Function 99.6 1.3E-14 2.8E-19 154.7 18.9 229 610-844 205-449 (498)
158 KOG2096 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 147.3 17.6 208 631-845 79-308 (420)
159 KOG0649 WD40 repeat protein [G 99.6 2E-13 4.3E-18 135.0 24.0 270 560-844 17-315 (325)
160 KOG2106 Uncharacterized conser 99.6 1.8E-13 4E-18 147.2 25.2 274 552-845 153-477 (626)
161 KOG0650 WD40 repeat nucleolar 99.6 3.8E-14 8.2E-19 155.1 18.7 287 551-843 398-733 (733)
162 KOG1538 Uncharacterized conser 99.6 1.3E-13 2.9E-18 151.9 22.9 212 618-845 36-293 (1081)
163 KOG0303 Actin-binding protein 99.6 5.5E-14 1.2E-18 147.3 18.8 189 604-795 89-294 (472)
164 KOG1034 Transcriptional repres 99.6 1.3E-14 2.9E-19 148.9 14.0 206 636-845 87-337 (385)
165 KOG0290 Conserved WD40 repeat- 99.6 2.9E-14 6.2E-19 144.2 16.0 206 551-756 94-320 (364)
166 KOG4378 Nuclear protein COP1 [ 99.6 1.9E-14 4.1E-19 154.2 15.0 259 573-845 13-280 (673)
167 KOG2394 WD40 protein DMR-N9 [G 99.6 1.8E-13 3.9E-18 148.4 22.4 137 638-776 219-384 (636)
168 KOG1517 Guanine nucleotide bin 99.6 2.2E-13 4.7E-18 157.3 24.0 286 557-844 1068-1380(1387)
169 KOG1539 WD repeat protein [Gen 99.6 9E-14 1.9E-18 157.5 20.1 181 610-793 465-646 (910)
170 KOG1445 Tumor-specific antigen 99.6 7E-14 1.5E-18 153.3 16.9 187 610-796 645-845 (1012)
171 KOG1009 Chromatin assembly com 99.6 1.8E-13 3.9E-18 144.3 19.1 143 610-754 31-195 (434)
172 KOG0644 Uncharacterized conser 99.6 1.6E-15 3.5E-20 170.7 4.1 121 628-754 180-300 (1113)
173 KOG0642 Cell-cycle nuclear pro 99.5 8E-14 1.7E-18 152.3 15.7 185 610-795 311-561 (577)
174 KOG1007 WD repeat protein TSSC 99.5 3.2E-13 7E-18 136.5 18.1 235 603-845 28-289 (370)
175 COG2319 FOG: WD40 repeat [Gene 99.5 3.6E-12 7.9E-17 141.5 28.7 225 611-846 83-315 (466)
176 KOG1310 WD40 repeat protein [G 99.5 6.6E-14 1.4E-18 151.7 13.9 164 630-793 42-229 (758)
177 KOG1539 WD repeat protein [Gen 99.5 1.7E-12 3.6E-17 147.5 25.7 280 553-845 74-365 (910)
178 KOG0650 WD40 repeat nucleolar 99.5 1.9E-13 4.1E-18 149.7 17.5 207 628-845 390-680 (733)
179 KOG0649 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 129.5 21.1 161 629-797 53-237 (325)
180 KOG0290 Conserved WD40 repeat- 99.5 2.7E-12 5.9E-17 130.1 23.7 223 610-836 116-357 (364)
181 KOG4227 WD40 repeat protein [G 99.5 1.1E-12 2.4E-17 136.9 18.5 248 551-844 54-321 (609)
182 KOG1587 Cytoplasmic dynein int 99.5 2E-12 4.4E-17 148.2 21.1 221 615-845 222-516 (555)
183 KOG2055 WD40 repeat protein [G 99.4 4.7E-12 1E-16 135.5 19.5 199 637-844 212-416 (514)
184 PRK01742 tolB translocation pr 99.4 1.2E-11 2.6E-16 141.7 24.2 211 611-844 180-400 (429)
185 KOG2110 Uncharacterized conser 99.4 3.5E-12 7.7E-17 133.4 17.6 142 614-757 105-251 (391)
186 KOG4594 Sequence-specific sing 99.4 6.2E-14 1.3E-18 140.4 4.3 68 4-72 12-79 (354)
187 PRK11028 6-phosphogluconolacto 99.4 1.9E-10 4.2E-15 127.1 29.4 224 613-844 55-303 (330)
188 KOG1517 Guanine nucleotide bin 99.4 1.8E-11 3.8E-16 141.9 20.2 227 610-844 1081-1332(1387)
189 KOG1524 WD40 repeat-containing 99.4 7.7E-12 1.7E-16 135.5 16.2 201 612-841 82-282 (737)
190 PRK11028 6-phosphogluconolacto 99.4 1.4E-10 3.1E-15 128.2 26.6 228 612-844 9-257 (330)
191 KOG1188 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 127.4 17.1 266 569-844 47-345 (376)
192 KOG0644 Uncharacterized conser 99.4 6.9E-13 1.5E-17 149.9 7.6 177 610-793 207-466 (1113)
193 KOG2394 WD40 protein DMR-N9 [G 99.4 7.5E-12 1.6E-16 136.0 14.8 127 630-757 282-455 (636)
194 KOG1587 Cytoplasmic dynein int 99.4 2.8E-11 6.1E-16 138.9 20.1 243 553-795 242-516 (555)
195 KOG1009 Chromatin assembly com 99.4 4.9E-12 1.1E-16 133.6 12.2 137 638-775 13-174 (434)
196 KOG2110 Uncharacterized conser 99.3 1.8E-10 4E-15 120.7 23.7 151 555-711 89-249 (391)
197 KOG2321 WD40 repeat protein [G 99.3 4.6E-11 1E-15 130.8 19.9 240 550-793 48-341 (703)
198 KOG1523 Actin-related protein 99.3 1.1E-10 2.3E-15 120.2 21.4 200 554-757 11-239 (361)
199 KOG1272 WD40-repeat-containing 99.3 7.8E-12 1.7E-16 133.8 12.3 222 557-793 133-360 (545)
200 PF08662 eIF2A: Eukaryotic tra 99.3 9.6E-11 2.1E-15 119.0 19.1 118 638-762 59-186 (194)
201 KOG0322 G-protein beta subunit 99.3 5.9E-12 1.3E-16 126.2 9.1 141 611-753 171-322 (323)
202 KOG4227 WD40 repeat protein [G 99.3 3.5E-11 7.7E-16 125.8 14.7 165 631-797 49-227 (609)
203 KOG1538 Uncharacterized conser 99.3 3.1E-11 6.7E-16 133.5 14.5 193 640-844 14-210 (1081)
204 KOG0280 Uncharacterized conser 99.3 3.7E-10 8.1E-15 115.1 20.9 134 640-774 123-261 (339)
205 KOG0322 G-protein beta subunit 99.3 1.4E-10 3.1E-15 116.3 17.3 156 638-794 150-322 (323)
206 KOG0771 Prolactin regulatory e 99.3 4.3E-11 9.4E-16 127.5 14.1 194 642-844 148-353 (398)
207 KOG1523 Actin-related protein 99.3 1.9E-10 4E-15 118.5 18.1 185 610-795 27-236 (361)
208 KOG1310 WD40 repeat protein [G 99.3 1E-11 2.2E-16 135.0 8.8 171 673-844 43-230 (758)
209 KOG1963 WD40 repeat protein [G 99.3 1.9E-09 4E-14 124.3 26.9 196 557-757 164-378 (792)
210 KOG0771 Prolactin regulatory e 99.2 8.4E-11 1.8E-15 125.3 14.6 177 610-791 161-350 (398)
211 KOG1240 Protein kinase contain 99.2 1.4E-09 3.1E-14 128.4 26.0 245 550-795 1045-1334(1431)
212 KOG1240 Protein kinase contain 99.2 5.8E-10 1.2E-14 131.6 22.1 218 628-846 1038-1335(1431)
213 KOG2139 WD40 repeat protein [G 99.2 3.6E-09 7.8E-14 110.6 23.9 135 613-749 160-306 (445)
214 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3.1E-14 120.5 21.8 141 611-755 76-221 (541)
215 KOG4547 WD40 repeat-containing 99.2 2E-09 4.4E-14 119.3 23.0 161 611-775 11-193 (541)
216 PRK01742 tolB translocation pr 99.2 9.6E-10 2.1E-14 126.1 21.1 169 614-794 227-400 (429)
217 KOG3881 Uncharacterized conser 99.2 6.6E-10 1.4E-14 117.4 17.4 148 610-761 166-327 (412)
218 PRK04922 tolB translocation pr 99.2 6.1E-09 1.3E-13 119.6 26.9 175 613-795 182-368 (433)
219 KOG1334 WD40 repeat protein [G 99.2 2.9E-10 6.3E-15 122.7 14.3 129 629-757 133-266 (559)
220 KOG0974 WD-repeat protein WDR6 99.2 3.2E-10 6.8E-15 132.5 15.1 138 610-755 150-289 (967)
221 KOG2111 Uncharacterized conser 99.2 2.7E-08 5.8E-13 102.9 27.1 229 558-796 10-257 (346)
222 PRK05137 tolB translocation pr 99.2 1.3E-08 2.8E-13 117.0 28.2 141 614-761 181-329 (435)
223 KOG1334 WD40 repeat protein [G 99.1 7.2E-10 1.6E-14 119.7 16.0 280 551-844 140-465 (559)
224 KOG1963 WD40 repeat protein [G 99.1 3.5E-09 7.5E-14 122.1 21.4 176 614-794 36-321 (792)
225 KOG0309 Conserved WD40 repeat- 99.1 4.7E-10 1E-14 125.8 13.9 200 555-756 26-234 (1081)
226 KOG2111 Uncharacterized conser 99.1 1.3E-08 2.7E-13 105.2 22.6 153 554-711 95-257 (346)
227 PRK03629 tolB translocation pr 99.1 3.3E-08 7.2E-13 113.2 28.3 214 613-844 177-405 (429)
228 KOG1064 RAVE (regulator of V-A 99.1 3.4E-10 7.3E-15 137.3 12.0 181 600-795 2210-2398(2439)
229 PRK02889 tolB translocation pr 99.1 1.1E-08 2.4E-13 117.2 24.1 177 614-795 175-360 (427)
230 PRK02889 tolB translocation pr 99.1 6.1E-09 1.3E-13 119.3 21.3 141 616-761 221-367 (427)
231 PRK03629 tolB translocation pr 99.1 2.6E-08 5.6E-13 114.2 24.3 137 616-759 224-368 (429)
232 PF08662 eIF2A: Eukaryotic tra 99.0 1.3E-08 2.8E-13 103.4 19.3 131 642-778 9-155 (194)
233 KOG0974 WD-repeat protein WDR6 99.0 9E-09 1.9E-13 120.6 19.8 196 638-844 87-287 (967)
234 KOG1524 WD40 repeat-containing 99.0 8E-09 1.7E-13 112.5 17.1 183 551-757 71-258 (737)
235 PF02239 Cytochrom_D1: Cytochr 99.0 7E-08 1.5E-12 107.8 25.1 206 574-788 18-240 (369)
236 KOG3881 Uncharacterized conser 99.0 2.2E-08 4.8E-13 106.0 19.4 185 610-796 120-321 (412)
237 PRK05137 tolB translocation pr 99.0 4E-08 8.6E-13 113.0 23.5 136 615-757 226-369 (435)
238 KOG3914 WD repeat protein WDR4 99.0 4.1E-09 8.9E-14 112.1 13.6 118 644-764 113-233 (390)
239 PRK00178 tolB translocation pr 99.0 2E-07 4.3E-12 107.1 28.5 173 616-795 180-363 (430)
240 TIGR02800 propeller_TolB tol-p 99.0 1.4E-07 3.1E-12 107.7 26.5 176 612-795 167-354 (417)
241 PRK04922 tolB translocation pr 99.0 5.6E-08 1.2E-12 111.7 22.2 139 614-759 227-373 (433)
242 KOG4714 Nucleoporin [Nuclear s 98.9 7.7E-09 1.7E-13 104.0 12.4 144 610-755 106-255 (319)
243 KOG1409 Uncharacterized conser 98.9 1E-08 2.2E-13 106.7 13.6 126 630-756 106-272 (404)
244 PRK04792 tolB translocation pr 98.9 3.3E-07 7.1E-12 105.6 26.8 139 615-760 198-344 (448)
245 KOG0280 Uncharacterized conser 98.9 5E-08 1.1E-12 99.8 17.3 206 613-826 44-265 (339)
246 KOG4497 Uncharacterized conser 98.9 1.1E-08 2.3E-13 105.8 12.5 115 643-760 13-128 (447)
247 KOG1272 WD40-repeat-containing 98.9 1.9E-09 4.2E-14 115.8 7.2 192 640-847 131-325 (545)
248 PF02239 Cytochrom_D1: Cytochr 98.9 2.4E-07 5.1E-12 103.6 22.8 187 651-846 6-203 (369)
249 KOG4532 WD40-like repeat conta 98.9 3.1E-07 6.7E-12 92.9 20.5 151 610-763 133-291 (344)
250 KOG4497 Uncharacterized conser 98.8 2.5E-07 5.4E-12 95.9 19.8 185 558-755 13-241 (447)
251 PRK01029 tolB translocation pr 98.8 3.2E-07 6.9E-12 104.9 22.4 149 613-763 255-412 (428)
252 PRK00178 tolB translocation pr 98.8 5.5E-07 1.2E-11 103.5 24.5 166 616-788 224-397 (430)
253 KOG2139 WD40 repeat protein [G 98.8 1.3E-07 2.7E-12 99.3 17.0 190 638-839 98-305 (445)
254 KOG2321 WD40 repeat protein [G 98.8 1.7E-07 3.7E-12 103.4 18.0 189 643-843 138-341 (703)
255 PF10282 Lactonase: Lactonase, 98.8 3.5E-06 7.6E-11 93.8 28.3 228 613-845 60-322 (345)
256 KOG1409 Uncharacterized conser 98.7 1.3E-07 2.8E-12 98.7 13.9 85 627-711 186-271 (404)
257 PRK04792 tolB translocation pr 98.7 9.9E-07 2.2E-11 101.6 22.2 166 616-788 243-416 (448)
258 KOG4190 Uncharacterized conser 98.7 2.6E-08 5.6E-13 108.5 8.2 163 630-795 727-906 (1034)
259 KOG3914 WD repeat protein WDR4 98.7 8.2E-08 1.8E-12 102.3 11.7 102 613-720 130-232 (390)
260 KOG2695 WD40 repeat protein [G 98.7 5E-08 1.1E-12 101.7 8.6 148 611-765 230-387 (425)
261 TIGR02800 propeller_TolB tol-p 98.7 2.4E-06 5.3E-11 97.6 23.0 136 615-758 214-358 (417)
262 KOG2315 Predicted translation 98.6 3.9E-06 8.4E-11 93.1 21.9 228 557-793 129-388 (566)
263 PRK01029 tolB translocation pr 98.6 3.2E-06 6.9E-11 96.8 22.4 143 616-762 212-367 (428)
264 KOG4190 Uncharacterized conser 98.6 1.5E-07 3.2E-12 102.8 10.5 151 610-765 752-917 (1034)
265 KOG1354 Serine/threonine prote 98.6 3E-07 6.5E-12 95.9 12.1 204 638-844 84-358 (433)
266 KOG1354 Serine/threonine prote 98.6 1.7E-06 3.6E-11 90.5 17.4 156 635-793 161-357 (433)
267 PF10282 Lactonase: Lactonase, 98.6 3.1E-05 6.8E-10 86.2 28.2 230 612-844 10-274 (345)
268 KOG1064 RAVE (regulator of V-A 98.6 4.2E-07 9E-12 111.4 13.1 189 634-847 2204-2400(2439)
269 PF13360 PQQ_2: PQQ-like domai 98.6 1.9E-05 4.1E-10 82.6 24.1 213 614-846 2-231 (238)
270 PLN02919 haloacid dehalogenase 98.5 3E-05 6.5E-10 97.8 29.4 203 640-846 625-889 (1057)
271 TIGR02658 TTQ_MADH_Hv methylam 98.5 1.8E-05 3.9E-10 86.9 23.9 199 555-763 106-339 (352)
272 PLN02919 haloacid dehalogenase 98.4 3.3E-05 7.1E-10 97.4 25.3 145 610-758 700-892 (1057)
273 PF00400 WD40: WD domain, G-be 98.4 9.2E-07 2E-11 64.6 6.9 38 629-666 2-39 (39)
274 TIGR03300 assembly_YfgL outer 98.4 0.00014 3.1E-09 82.0 28.1 210 612-842 152-376 (377)
275 COG2706 3-carboxymuconate cycl 98.4 0.00021 4.5E-09 76.1 26.4 242 555-799 41-325 (346)
276 PF00400 WD40: WD domain, G-be 98.4 7.8E-07 1.7E-11 65.0 5.9 39 670-708 1-39 (39)
277 COG2706 3-carboxymuconate cycl 98.4 0.00039 8.5E-09 74.1 28.2 142 613-756 62-223 (346)
278 KOG2315 Predicted translation 98.4 8.8E-06 1.9E-10 90.3 16.2 136 614-760 250-395 (566)
279 KOG1645 RING-finger-containing 98.3 1.1E-05 2.4E-10 86.1 15.7 124 627-754 182-315 (463)
280 KOG0309 Conserved WD40 repeat- 98.3 5.2E-06 1.1E-10 94.1 13.9 155 640-795 69-232 (1081)
281 KOG2314 Translation initiation 98.3 5.3E-05 1.2E-09 83.9 21.2 272 556-839 213-561 (698)
282 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00027 5.9E-09 77.7 26.8 100 615-720 27-145 (352)
283 PRK04043 tolB translocation pr 98.3 0.00028 6.1E-09 80.4 27.7 163 614-785 168-339 (419)
284 KOG1832 HIV-1 Vpr-binding prot 98.3 4.9E-07 1.1E-11 103.8 5.0 164 627-795 1090-1266(1516)
285 PF11768 DUF3312: Protein of u 98.3 5.4E-05 1.2E-09 85.4 20.5 137 615-757 184-332 (545)
286 PF07433 DUF1513: Protein of u 98.3 0.00023 5E-09 75.8 24.0 188 575-767 31-260 (305)
287 PF08450 SGL: SMP-30/Gluconola 98.3 0.00036 7.9E-09 73.7 25.6 163 615-782 60-242 (246)
288 TIGR03300 assembly_YfgL outer 98.3 0.00014 3.1E-09 81.9 23.9 210 613-846 73-298 (377)
289 KOG1912 WD40 repeat protein [G 98.3 1.9E-05 4.1E-10 90.3 15.7 233 556-796 18-305 (1062)
290 KOG4714 Nucleoporin [Nuclear s 98.2 7.1E-06 1.5E-10 83.0 10.9 73 639-711 180-255 (319)
291 PRK04043 tolB translocation pr 98.2 0.00013 2.8E-09 83.2 22.0 135 615-759 213-362 (419)
292 COG5354 Uncharacterized protei 98.2 0.00023 5E-09 78.4 22.5 233 557-795 75-348 (561)
293 COG4946 Uncharacterized protei 98.2 0.00018 4E-09 78.3 21.2 124 636-762 357-485 (668)
294 PF08513 LisH: LisH; InterPro 98.2 2E-06 4.4E-11 57.1 3.6 27 10-36 1-27 (27)
295 KOG2695 WD40 repeat protein [G 98.2 1E-05 2.2E-10 84.9 10.1 150 644-798 217-379 (425)
296 PF11768 DUF3312: Protein of u 98.1 6.2E-05 1.3E-09 84.9 17.0 91 618-711 239-330 (545)
297 KOG2066 Vacuolar assembly/sort 98.1 4.4E-05 9.4E-10 88.2 15.1 185 638-844 39-232 (846)
298 PF15492 Nbas_N: Neuroblastoma 98.1 0.00036 7.8E-09 72.3 20.2 105 641-746 46-170 (282)
299 KOG2066 Vacuolar assembly/sort 98.1 6.3E-05 1.4E-09 86.9 16.1 139 611-766 55-199 (846)
300 KOG1912 WD40 repeat protein [G 98.1 0.00017 3.7E-09 82.8 19.1 136 615-754 35-186 (1062)
301 PF04762 IKI3: IKI3 family; I 98.1 0.0004 8.6E-09 86.3 24.2 219 613-844 95-378 (928)
302 KOG1275 PAB-dependent poly(A) 98.1 5.4E-05 1.2E-09 88.3 15.3 174 611-793 153-340 (1118)
303 COG5170 CDC55 Serine/threonine 98.1 3.2E-05 7E-10 79.9 11.9 163 639-802 86-316 (460)
304 KOG4532 WD40-like repeat conta 98.1 0.00034 7.4E-09 71.4 18.4 182 611-795 90-282 (344)
305 PF04762 IKI3: IKI3 family; I 98.0 0.00047 1E-08 85.6 23.2 203 636-847 73-335 (928)
306 PRK11138 outer membrane biogen 98.0 0.0017 3.7E-08 73.8 25.9 214 613-844 168-393 (394)
307 COG4946 Uncharacterized protei 98.0 0.00014 3.1E-09 79.1 15.6 124 611-740 377-505 (668)
308 KOG2041 WD40 repeat protein [G 98.0 3.6E-05 7.9E-10 87.1 11.0 118 637-755 13-146 (1189)
309 PF08450 SGL: SMP-30/Gluconola 98.0 0.0024 5.3E-08 67.4 24.2 172 613-795 20-213 (246)
310 COG5170 CDC55 Serine/threonine 98.0 8.9E-05 1.9E-09 76.8 12.4 205 637-845 25-309 (460)
311 PF15492 Nbas_N: Neuroblastoma 97.9 0.00087 1.9E-08 69.6 18.6 199 555-765 45-270 (282)
312 KOG1645 RING-finger-containing 97.9 0.00023 4.9E-09 76.4 14.5 94 662-757 175-269 (463)
313 KOG2041 WD40 repeat protein [G 97.9 0.00087 1.9E-08 76.3 19.6 196 556-755 17-248 (1189)
314 KOG0882 Cyclophilin-related pe 97.9 1.1E-05 2.3E-10 87.3 4.0 153 610-763 25-240 (558)
315 KOG0882 Cyclophilin-related pe 97.9 0.00027 5.8E-09 76.8 14.4 201 555-763 55-314 (558)
316 KOG1275 PAB-dependent poly(A) 97.8 0.00021 4.7E-09 83.4 14.0 185 649-843 146-340 (1118)
317 PF07433 DUF1513: Protein of u 97.8 0.0013 2.9E-08 70.1 18.9 183 558-750 55-281 (305)
318 KOG2114 Vacuolar assembly/sort 97.8 0.0021 4.6E-08 75.2 21.6 157 614-772 91-262 (933)
319 PRK11138 outer membrane biogen 97.8 0.0013 2.8E-08 74.7 20.0 136 650-793 256-392 (394)
320 KOG3617 WD40 and TPR repeat-co 97.8 0.00023 4.9E-09 82.2 12.9 71 641-711 62-132 (1416)
321 PF08553 VID27: VID27 cytoplas 97.8 0.0013 2.8E-08 79.0 19.6 135 613-754 502-647 (794)
322 PF13360 PQQ_2: PQQ-like domai 97.7 0.0032 6.9E-08 65.7 20.6 174 612-796 43-231 (238)
323 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.0044 9.6E-08 63.3 19.8 140 650-793 23-163 (354)
324 KOG1920 IkappaB kinase complex 97.7 0.0015 3.2E-08 79.1 18.7 114 642-757 199-325 (1265)
325 KOG2114 Vacuolar assembly/sort 97.7 0.0045 9.7E-08 72.6 21.5 191 600-795 27-243 (933)
326 COG5354 Uncharacterized protei 97.7 0.0036 7.7E-08 69.4 19.5 201 557-767 135-362 (561)
327 KOG1008 Uncharacterized conser 97.6 1.6E-05 3.5E-10 89.4 0.9 204 638-844 56-274 (783)
328 KOG3621 WD40 repeat-containing 97.6 0.00084 1.8E-08 77.0 14.3 117 638-755 33-155 (726)
329 KOG4640 Anaphase-promoting com 97.5 0.0004 8.7E-09 78.6 9.8 95 638-733 20-115 (665)
330 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0044 9.5E-08 55.9 13.5 102 641-750 2-110 (111)
331 PRK02888 nitrous-oxide reducta 97.4 0.011 2.3E-07 68.9 20.2 110 646-757 200-354 (635)
332 cd00216 PQQ_DH Dehydrogenases 97.4 0.064 1.4E-06 62.7 27.1 148 612-763 117-328 (488)
333 KOG1920 IkappaB kinase complex 97.4 0.023 5E-07 69.3 22.7 178 611-795 86-322 (1265)
334 KOG2395 Protein involved in va 97.3 0.0032 7E-08 70.1 13.9 136 611-754 352-500 (644)
335 KOG3617 WD40 and TPR repeat-co 97.3 0.0014 3.1E-08 76.0 11.2 108 643-754 20-131 (1416)
336 COG0823 TolB Periplasmic compo 97.2 0.027 5.9E-07 64.1 20.8 156 630-788 184-349 (425)
337 PRK02888 nitrous-oxide reducta 97.2 0.021 4.5E-07 66.5 19.8 103 648-755 286-405 (635)
338 KOG1008 Uncharacterized conser 97.2 0.00011 2.3E-09 83.0 1.2 140 613-755 127-276 (783)
339 smart00320 WD40 WD40 repeats. 97.2 0.00086 1.9E-08 46.6 5.6 38 629-666 3-40 (40)
340 PF04053 Coatomer_WDAD: Coatom 97.2 0.012 2.6E-07 67.3 17.6 133 650-793 117-260 (443)
341 smart00320 WD40 WD40 repeats. 97.2 0.00083 1.8E-08 46.7 5.5 39 670-708 2-40 (40)
342 PF02897 Peptidase_S9_N: Proly 97.2 0.082 1.8E-06 60.4 24.5 115 641-756 126-262 (414)
343 KOG2314 Translation initiation 97.2 0.036 7.9E-07 62.2 19.7 196 556-758 308-529 (698)
344 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.14 3.1E-06 52.6 21.1 84 649-733 62-145 (354)
345 COG0823 TolB Periplasmic compo 97.0 0.0077 1.7E-07 68.6 13.6 141 615-762 218-366 (425)
346 PF06433 Me-amine-dh_H: Methyl 97.0 0.057 1.2E-06 58.6 19.2 204 554-766 95-332 (342)
347 PF14870 PSII_BNR: Photosynthe 97.0 0.72 1.6E-05 50.0 27.8 167 622-793 87-259 (302)
348 KOG2079 Vacuolar assembly/sort 97.0 0.012 2.7E-07 70.6 14.9 101 649-753 98-202 (1206)
349 PF03178 CPSF_A: CPSF A subuni 96.9 0.086 1.9E-06 58.1 20.9 135 613-754 60-202 (321)
350 COG3386 Gluconolactonase [Carb 96.9 0.079 1.7E-06 57.7 19.9 160 615-776 85-264 (307)
351 COG3386 Gluconolactonase [Carb 96.9 0.12 2.6E-06 56.3 20.9 124 617-745 143-277 (307)
352 PF08596 Lgl_C: Lethal giant l 96.9 0.11 2.4E-06 58.6 21.4 169 627-797 75-292 (395)
353 COG3391 Uncharacterized conser 96.8 0.22 4.7E-06 56.3 23.3 142 614-761 95-246 (381)
354 PF02897 Peptidase_S9_N: Proly 96.8 0.69 1.5E-05 52.8 27.1 205 557-763 127-366 (414)
355 cd00216 PQQ_DH Dehydrogenases 96.7 0.52 1.1E-05 55.1 26.4 147 644-796 222-425 (488)
356 PF03178 CPSF_A: CPSF A subuni 96.7 0.4 8.8E-06 52.7 24.1 171 616-794 3-201 (321)
357 KOG1832 HIV-1 Vpr-binding prot 96.7 0.002 4.4E-08 75.1 5.6 94 670-764 1091-1186(1516)
358 PF04053 Coatomer_WDAD: Coatom 96.7 0.091 2E-06 60.2 18.5 142 635-793 29-171 (443)
359 PHA02713 hypothetical protein; 96.7 0.054 1.2E-06 64.3 17.4 90 617-711 274-376 (557)
360 KOG3621 WD40 repeat-containing 96.6 0.017 3.7E-07 66.7 12.2 128 611-742 51-187 (726)
361 COG3490 Uncharacterized protei 96.6 0.096 2.1E-06 54.6 16.1 157 604-762 129-318 (366)
362 COG3391 Uncharacterized conser 96.6 0.39 8.5E-06 54.2 23.0 118 640-760 75-196 (381)
363 PF06977 SdiA-regulated: SdiA- 96.6 0.33 7.1E-06 51.1 20.5 154 638-792 64-247 (248)
364 PF04841 Vps16_N: Vps16, N-ter 96.5 1.6 3.5E-05 49.8 27.7 48 616-668 62-109 (410)
365 PF08553 VID27: VID27 cytoplas 96.5 0.04 8.6E-07 66.5 15.2 143 649-793 492-645 (794)
366 PF08596 Lgl_C: Lethal giant l 96.4 0.24 5.3E-06 55.9 19.6 114 640-754 3-173 (395)
367 PF06433 Me-amine-dh_H: Methyl 96.4 0.56 1.2E-05 51.1 21.2 152 601-757 53-216 (342)
368 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.11 2.5E-06 58.0 16.8 189 556-754 103-315 (353)
369 PRK13616 lipoprotein LpqB; Pro 96.3 0.11 2.4E-06 61.8 17.2 105 637-750 348-472 (591)
370 KOG1916 Nuclear protein, conta 96.3 0.0021 4.5E-08 75.3 2.4 146 614-766 110-282 (1283)
371 KOG4640 Anaphase-promoting com 96.3 0.015 3.3E-07 66.3 9.0 78 681-761 21-99 (665)
372 PF14583 Pectate_lyase22: Olig 96.3 0.52 1.1E-05 52.2 20.7 194 558-761 40-279 (386)
373 KOG1916 Nuclear protein, conta 96.2 0.0023 5E-08 74.9 2.5 120 639-759 181-328 (1283)
374 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.23 5.1E-06 45.0 14.4 99 683-790 2-109 (111)
375 COG5167 VID27 Protein involved 96.2 0.2 4.3E-06 56.1 16.5 189 557-754 422-632 (776)
376 smart00667 LisH Lissencephaly 96.1 0.0096 2.1E-07 41.6 4.2 31 9-39 3-33 (34)
377 PRK10115 protease 2; Provision 96.1 0.99 2.1E-05 55.1 24.2 112 640-753 128-254 (686)
378 KOG2395 Protein involved in va 96.1 0.062 1.4E-06 60.3 12.2 124 649-775 344-480 (644)
379 PF15390 DUF4613: Domain of un 96.0 0.24 5.2E-06 56.7 16.8 118 638-755 56-187 (671)
380 PF10168 Nup88: Nuclear pore c 95.8 0.62 1.3E-05 56.5 20.5 82 638-719 84-188 (717)
381 KOG3630 Nuclear pore complex, 95.7 0.078 1.7E-06 64.3 12.0 135 640-777 102-254 (1405)
382 PF00780 CNH: CNH domain; Int 95.7 2.2 4.7E-05 45.5 22.6 137 617-763 18-174 (275)
383 KOG2444 WD40 repeat protein [G 95.7 0.031 6.7E-07 56.6 7.4 104 649-754 69-177 (238)
384 PF14870 PSII_BNR: Photosynthe 95.7 0.79 1.7E-05 49.7 18.7 169 618-792 125-301 (302)
385 PRK13616 lipoprotein LpqB; Pro 95.7 0.64 1.4E-05 55.4 19.6 108 640-754 398-525 (591)
386 KOG4499 Ca2+-binding protein R 95.7 0.36 7.8E-06 49.2 14.6 137 638-777 108-264 (310)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 4.7 0.0001 47.6 26.3 72 644-716 239-338 (527)
388 PF06977 SdiA-regulated: SdiA- 95.5 3.9 8.4E-05 43.1 23.9 122 632-755 15-148 (248)
389 COG3490 Uncharacterized protei 95.5 0.35 7.6E-06 50.6 14.2 144 641-784 70-243 (366)
390 TIGR03118 PEPCTERM_chp_1 conse 95.5 3.5 7.6E-05 44.1 21.6 198 641-844 25-278 (336)
391 PF05096 Glu_cyclase_2: Glutam 95.4 4.4 9.5E-05 42.8 25.2 117 641-764 47-167 (264)
392 KOG4441 Proteins containing BT 95.2 0.97 2.1E-05 53.8 19.0 138 615-759 301-457 (571)
393 COG3204 Uncharacterized protei 95.2 2.5 5.4E-05 44.9 19.4 121 634-755 81-211 (316)
394 PRK13684 Ycf48-like protein; P 95.1 5.6 0.00012 44.1 23.5 161 625-794 161-330 (334)
395 PF12234 Rav1p_C: RAVE protein 94.9 0.71 1.5E-05 54.6 16.5 124 628-754 19-156 (631)
396 PF00780 CNH: CNH domain; Int 94.9 3.1 6.8E-05 44.3 20.6 122 648-775 5-147 (275)
397 KOG2444 WD40 repeat protein [G 94.8 0.041 8.9E-07 55.7 5.0 99 610-711 75-178 (238)
398 PF02333 Phytase: Phytase; In 94.8 3.9 8.5E-05 45.6 20.8 192 648-844 66-289 (381)
399 PF00930 DPPIV_N: Dipeptidyl p 94.7 8.9 0.00019 42.8 27.3 109 661-770 159-283 (353)
400 PF12894 Apc4_WD40: Anaphase-p 94.7 0.095 2.1E-06 39.9 5.6 34 638-672 11-44 (47)
401 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 2.1 4.6E-05 50.5 19.7 66 650-718 120-196 (527)
402 KOG3630 Nuclear pore complex, 94.4 0.93 2E-05 55.6 15.6 101 639-742 156-262 (1405)
403 PRK10115 protease 2; Provision 94.4 5.4 0.00012 48.7 22.9 175 610-791 148-340 (686)
404 PF04841 Vps16_N: Vps16, N-ter 94.2 7.2 0.00016 44.5 22.3 100 646-753 186-286 (410)
405 KOG2079 Vacuolar assembly/sort 94.2 0.14 3E-06 62.0 8.4 96 692-788 99-198 (1206)
406 TIGR03074 PQQ_membr_DH membran 94.2 4.9 0.00011 49.4 21.8 112 650-764 194-354 (764)
407 PF05694 SBP56: 56kDa selenium 94.0 0.87 1.9E-05 51.0 13.5 128 613-743 220-393 (461)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 94.0 0.56 1.2E-05 53.0 12.4 92 675-767 302-411 (415)
409 PF10214 Rrn6: RNA polymerase 93.9 9.2 0.0002 47.4 24.0 155 637-795 78-276 (765)
410 KOG2377 Uncharacterized conser 93.7 1.6 3.5E-05 48.6 14.6 119 637-757 65-188 (657)
411 PRK13684 Ycf48-like protein; P 93.7 14 0.0003 41.0 27.5 109 680-792 172-285 (334)
412 PF10647 Gmad1: Lipoprotein Lp 93.2 13 0.00028 39.4 22.1 111 640-750 67-192 (253)
413 PF10647 Gmad1: Lipoprotein Lp 93.2 1.8 3.8E-05 46.0 14.1 112 640-754 25-144 (253)
414 PF05694 SBP56: 56kDa selenium 92.9 3.8 8.2E-05 46.1 16.3 144 610-756 152-344 (461)
415 PF12894 Apc4_WD40: Anaphase-p 92.9 0.31 6.7E-06 37.1 5.5 31 680-710 11-41 (47)
416 TIGR02604 Piru_Ver_Nterm putat 92.9 5.6 0.00012 44.7 18.2 102 639-742 14-142 (367)
417 PHA02713 hypothetical protein; 92.7 0.95 2.1E-05 53.8 12.4 143 615-765 367-544 (557)
418 PHA03098 kelch-like protein; P 92.7 2.3 5.1E-05 50.3 15.6 136 616-759 312-469 (534)
419 KOG1897 Damage-specific DNA bi 92.5 17 0.00037 44.6 21.8 149 640-793 776-940 (1096)
420 PHA03098 kelch-like protein; P 92.5 2.8 6.1E-05 49.6 16.0 104 649-758 294-418 (534)
421 COG5276 Uncharacterized conser 92.5 17 0.00037 38.7 24.3 142 613-762 104-249 (370)
422 PHA02790 Kelch-like protein; P 92.4 3.4 7.3E-05 48.3 16.3 105 649-758 271-388 (480)
423 KOG4499 Ca2+-binding protein R 92.4 3.9 8.4E-05 41.9 14.1 108 636-744 155-275 (310)
424 PLN00033 photosystem II stabil 92.1 8.6 0.00019 43.6 18.4 145 641-792 241-396 (398)
425 PF08728 CRT10: CRT10; InterP 92.0 2.8 6.1E-05 50.2 14.7 112 641-753 103-245 (717)
426 KOG4441 Proteins containing BT 91.9 2.5 5.4E-05 50.4 14.4 106 649-757 284-407 (571)
427 KOG1897 Damage-specific DNA bi 91.9 11 0.00024 46.1 19.2 145 604-754 796-942 (1096)
428 PF05096 Glu_cyclase_2: Glutam 91.8 11 0.00024 39.9 17.2 140 615-763 68-212 (264)
429 PF12234 Rav1p_C: RAVE protein 91.8 1.6 3.4E-05 51.8 12.3 93 614-710 50-156 (631)
430 TIGR03074 PQQ_membr_DH membran 91.6 19 0.00042 44.3 21.7 146 649-796 259-478 (764)
431 PF14727 PHTB1_N: PTHB1 N-term 91.5 29 0.00064 39.5 25.0 140 610-753 42-203 (418)
432 COG4257 Vgb Streptogramin lyas 91.2 23 0.00049 37.5 21.6 178 616-796 125-306 (353)
433 PF14583 Pectate_lyase22: Olig 90.9 8.3 0.00018 43.0 16.1 87 645-732 42-131 (386)
434 COG1520 FOG: WD40-like repeat 90.7 17 0.00036 40.8 19.1 111 649-764 68-181 (370)
435 PF10168 Nup88: Nuclear pore c 90.6 17 0.00036 44.5 19.8 74 681-756 85-181 (717)
436 PF07569 Hira: TUP1-like enhan 90.5 1.3 2.8E-05 45.8 9.0 65 646-711 18-96 (219)
437 PF10313 DUF2415: Uncharacteri 90.3 0.96 2.1E-05 33.6 5.5 32 724-755 1-34 (43)
438 PF10313 DUF2415: Uncharacteri 90.0 1.1 2.4E-05 33.3 5.6 31 639-669 1-34 (43)
439 KOG4460 Nuclear pore complex, 90.0 7.1 0.00015 44.4 14.4 78 682-759 105-203 (741)
440 KOG1898 Splicing factor 3b, su 89.7 56 0.0012 40.7 22.4 174 613-793 851-1046(1205)
441 COG3823 Glutamine cyclotransfe 89.7 8.2 0.00018 39.0 13.1 109 649-762 55-166 (262)
442 TIGR03606 non_repeat_PQQ dehyd 89.6 30 0.00066 39.8 19.7 56 637-692 28-90 (454)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 89.4 3.9 8.4E-05 46.4 12.3 93 627-720 296-407 (415)
444 PF14727 PHTB1_N: PTHB1 N-term 89.1 46 0.001 37.9 26.0 183 651-846 146-361 (418)
445 TIGR02604 Piru_Ver_Nterm putat 89.0 6.2 0.00013 44.3 13.8 99 638-741 71-200 (367)
446 COG1520 FOG: WD40-like repeat 89.0 37 0.0008 38.0 20.1 108 649-761 111-224 (370)
447 PF03022 MRJP: Major royal jel 88.8 38 0.00083 36.6 20.7 165 616-784 35-253 (287)
448 PF10395 Utp8: Utp8 family; I 88.4 52 0.0011 39.5 20.8 30 680-709 129-158 (670)
449 PF14761 HPS3_N: Hermansky-Pud 88.4 6.7 0.00014 40.0 11.9 102 651-755 29-164 (215)
450 PF07250 Glyoxal_oxid_N: Glyox 88.1 8.6 0.00019 40.3 13.0 142 617-764 48-207 (243)
451 PF07569 Hira: TUP1-like enhan 87.8 2.9 6.3E-05 43.3 9.3 72 688-761 18-102 (219)
452 KOG4460 Nuclear pore complex, 87.8 7.8 0.00017 44.1 12.9 55 725-780 105-159 (741)
453 PLN02153 epithiospecifier prot 87.2 52 0.0011 36.3 19.7 23 649-671 85-112 (341)
454 COG5276 Uncharacterized conser 87.1 46 0.001 35.6 23.9 170 575-756 109-287 (370)
455 COG3292 Predicted periplasmic 87.1 18 0.00038 41.9 15.3 166 619-793 358-530 (671)
456 PF12657 TFIIIC_delta: Transcr 87.0 3.1 6.7E-05 41.3 8.7 32 724-755 86-122 (173)
457 PHA02790 Kelch-like protein; P 86.5 23 0.00051 41.3 17.0 134 616-759 288-428 (480)
458 COG5184 ATS1 Alpha-tubulin sup 86.5 61 0.0013 36.9 18.9 151 640-794 177-366 (476)
459 PF14781 BBS2_N: Ciliary BBSom 86.2 22 0.00048 33.5 13.0 110 643-757 3-128 (136)
460 KOG2377 Uncharacterized conser 85.8 24 0.00053 39.7 15.1 122 644-769 28-156 (657)
461 COG3204 Uncharacterized protei 85.5 49 0.0011 35.5 16.6 116 677-794 82-209 (316)
462 PLN02193 nitrile-specifier pro 85.3 81 0.0018 36.7 20.7 139 615-760 193-357 (470)
463 COG4257 Vgb Streptogramin lyas 85.1 56 0.0012 34.7 18.2 194 556-765 106-315 (353)
464 PF07995 GSDH: Glucose / Sorbo 84.8 13 0.00028 41.1 13.2 102 640-744 3-133 (331)
465 PLN02153 epithiospecifier prot 84.7 31 0.00068 38.1 16.3 56 615-671 101-170 (341)
466 PF11715 Nup160: Nucleoporin N 84.6 4.2 9.2E-05 48.3 9.8 75 690-764 156-258 (547)
467 COG4247 Phy 3-phytase (myo-ino 84.5 56 0.0012 34.2 19.7 147 646-793 63-232 (364)
468 PF11715 Nup160: Nucleoporin N 84.2 5.4 0.00012 47.4 10.5 71 648-719 156-256 (547)
469 KOG2280 Vacuolar assembly/sort 84.1 39 0.00085 40.5 16.6 49 615-668 64-112 (829)
470 PF14761 HPS3_N: Hermansky-Pud 84.0 27 0.00058 35.8 13.6 96 613-711 36-164 (215)
471 PF08801 Nucleoporin_N: Nup133 84.0 18 0.0004 41.3 14.4 19 827-845 201-219 (422)
472 TIGR03548 mutarot_permut cycli 83.7 73 0.0016 34.8 19.4 106 649-758 72-198 (323)
473 PF10395 Utp8: Utp8 family; I 83.6 41 0.00089 40.3 16.8 155 638-795 129-305 (670)
474 PF10214 Rrn6: RNA polymerase 83.6 36 0.00078 42.3 17.5 115 639-755 146-277 (765)
475 TIGR03118 PEPCTERM_chp_1 conse 82.7 54 0.0012 35.4 15.6 155 611-767 106-292 (336)
476 PF12768 Rax2: Cortical protei 82.4 23 0.00049 38.2 13.2 94 614-711 15-124 (281)
477 COG5167 VID27 Protein involved 82.4 16 0.00034 41.6 12.0 104 649-755 478-592 (776)
478 KOG2247 WD40 repeat-containing 82.3 0.14 3.1E-06 57.0 -3.5 129 642-775 38-168 (615)
479 TIGR02276 beta_rpt_yvtn 40-res 81.4 5.3 0.00011 28.9 5.7 33 733-765 1-33 (42)
480 KOG3616 Selective LIM binding 80.5 17 0.00036 43.1 11.7 68 640-710 16-83 (1636)
481 PF13449 Phytase-like: Esteras 80.4 92 0.002 34.3 17.7 102 638-741 19-164 (326)
482 PF15390 DUF4613: Domain of un 80.1 44 0.00095 39.1 14.8 98 613-711 80-187 (671)
483 PF05935 Arylsulfotrans: Aryls 79.9 44 0.00095 39.0 15.6 117 644-765 153-312 (477)
484 KOG4659 Uncharacterized conser 79.8 1.2E+02 0.0027 38.7 19.1 273 538-838 391-719 (1899)
485 TIGR02276 beta_rpt_yvtn 40-res 79.6 7.4 0.00016 28.1 6.0 40 648-688 1-41 (42)
486 PF08728 CRT10: CRT10; InterP 79.6 75 0.0016 38.6 17.2 118 726-844 103-245 (717)
487 TIGR03547 muta_rot_YjhT mutatr 79.4 68 0.0015 35.4 16.5 43 615-659 85-128 (346)
488 PF12768 Rax2: Cortical protei 78.9 26 0.00056 37.7 12.2 98 660-759 16-128 (281)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 78.4 8.4 0.00018 47.2 9.0 85 659-743 328-418 (912)
490 PF07676 PD40: WD40-like Beta 77.8 8.9 0.00019 27.4 5.9 32 720-751 5-38 (39)
491 COG3292 Predicted periplasmic 77.3 29 0.00062 40.3 12.2 154 638-798 164-321 (671)
492 TIGR03548 mutarot_permut cycli 77.3 1E+02 0.0022 33.8 16.9 62 649-711 123-195 (323)
493 KOG3522 Predicted guanine nucl 76.7 38 0.00081 41.1 13.4 65 610-675 640-704 (925)
494 KOG1898 Splicing factor 3b, su 76.1 77 0.0017 39.5 15.9 97 661-761 854-969 (1205)
495 KOG1900 Nuclear pore complex, 75.7 30 0.00065 44.0 12.8 75 637-712 177-274 (1311)
496 PF05935 Arylsulfotrans: Aryls 75.3 1.7E+02 0.0037 34.1 19.7 100 658-763 126-240 (477)
497 PLN00033 photosystem II stabil 74.8 1.6E+02 0.0034 33.5 29.4 150 683-843 241-397 (398)
498 PF13449 Phytase-like: Esteras 74.8 56 0.0012 36.0 13.9 99 640-739 86-230 (326)
499 KOG1520 Predicted alkaloid syn 73.9 42 0.00091 37.2 12.2 192 593-793 69-291 (376)
500 PLN02193 nitrile-specifier pro 72.9 79 0.0017 36.8 15.2 144 615-761 244-417 (470)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.2e-31 Score=272.17 Aligned_cols=273 Identities=18% Similarity=0.251 Sum_probs=213.9
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecC----------CCCCCCCcEEE
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----------DTDPRDAGGRG 619 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d----------~t~~~d~~v~v 619 (847)
..-+.+++|+|||+.++++.. ++|||.++++.... -+ ..+.+-|....... .+++.|+.++|
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~---~l--~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR---AL--RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc---cc--cCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 334456777777777766543 37777776654322 11 01122222111110 15667999999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc----------
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---------- 689 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs---------- 689 (847)
||+..+ .++.++.+|+..|+|++|--+ .+|++|+.|++|++|+...|++.+++++|...|+.|+.+
T Consensus 232 Wd~~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 232 WDTKLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEccCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 999876 788999999999999999754 499999999999999999999999999999999999887
Q ss_pred -CC-------------------------CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 690 -PS-------------------------MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 690 -p~-------------------------~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
|. ++.|++|++|+++.+|+-....+++....+|...|+.+.|+||++ ++++++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaS 386 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASAS 386 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEee
Confidence 22 345999999999999998876778889999999999999999987 677999
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC 822 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 822 (847)
.|..|++||.++|+.+.+|++|-..|+-+++..+. .+.+++.|.++++|+..... ......-+.+.+....|+
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDws--- 460 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWS--- 460 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEec---
Confidence 99999999999999999999999999999887665 56688899999999965322 222222245566666666
Q ss_pred ccCCCcEEEEEeCCCeEEEEE
Q 003106 823 RSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 823 ~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+ ++..+++|+.|..+++|.
T Consensus 461 -p-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 -P-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -C-CCceeecCCCceEEEeec
Confidence 3 788899999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.6e-31 Score=278.20 Aligned_cols=278 Identities=18% Similarity=0.196 Sum_probs=227.3
Q ss_pred cCCCCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEeeecC--C----CCCCCCcEE
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD--D----TDPRDAGGR 618 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d--~----t~~~d~~v~ 618 (847)
+......++..+.|+.|+..+++++ ..++|.+.++.....+.... .....+.+.+. + +++.||+++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----SRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----cceeeEEEccCCCccceeeeccCCcee
Confidence 3445566778889999999999865 55999999886554433211 11122222222 2 789999999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
+|++... .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++..+...++|...|.+|+|.+||.+++||
T Consensus 245 lw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 245 LWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999875 7888999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec--C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM--N 776 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~--~ 776 (847)
+.|..-||||+++ +.++..+.+|...|.+|+|+|+|- .|+||+.|++++|||++..+++.++..|...|..+.+. .
T Consensus 322 GlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 322 GLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred Cccchhheeeccc-CcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999 899999999999999999999974 77899999999999999999999999999999988877 4
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..+.+++.|+.+++|....... +..-.|+ ..++.+++..+ ++.+|+|++.|.+|++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~-~ksLaGH------e~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSP-LKSLAGH------EGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCccc-chhhcCC------ccceEEEEecc-CCceEEEeccCceeeecc
Confidence 56788899999999998553221 1111111 12223333333 788999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=267.24 Aligned_cols=234 Identities=25% Similarity=0.313 Sum_probs=195.3
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-E
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-T 674 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~ 674 (847)
.+++-+++++ +++.|.++|+||+.+. .+..+.++|...|.|++|+|||+.||+|+.||+|++||.++++.+ +
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~ 194 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR 194 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc
Confidence 4455577766 8999999999999976 688899999999999999999999999999999999999987654 6
Q ss_pred EEccCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 675 NLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp-----~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.|.+|...|++++|.| ..++||+++.||+|+|||+.. +.++..+.+|...|+||+|--+ .++++++.|++|+
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIk 271 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIK 271 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEcCC--ceEEecCCCceEE
Confidence 7899999999999976 567999999999999999997 8899999999999999999744 5889999999999
Q ss_pred EEECCCCceEEEEeeCCceEEEEEec-------------C------------------------CCEEEEEcCCCcEEEE
Q 003106 750 YWSINNGSCTRVFKVESFCCWCVNAM-------------N------------------------RPCLWDKLDAGDIQIS 792 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~~v~~~~~~-------------~------------------------~~~l~~~~~~g~i~i~ 792 (847)
+|+...|.+.+.+++|..+|+.++.. . ...+.+++++..+.+|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 99999999999999999998877633 1 1248899999999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.......+....++ ...+. ++.+.| ++.+|++++.|.+|++|+-.+
T Consensus 352 ~p~~~kkpi~rmtgH--q~lVn----~V~fSP-d~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGH--QALVN----HVSFSP-DGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred cccccccchhhhhch--hhhee----eEEECC-CccEEEEeecccceeeeeCCC
Confidence 865443333333222 22222 333334 899999999999999998754
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=266.90 Aligned_cols=236 Identities=23% Similarity=0.235 Sum_probs=202.3
Q ss_pred CceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce
Q 003106 599 DNVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKS 672 (847)
Q Consensus 599 ~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~ 672 (847)
....++++.|+ +++.+|.+++|..... ..+.+|++|+..|.++.|+|. +.-||||+.||+|++|++++..+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 33445566665 8999999999999865 788899999999999999995 67899999999999999999999
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
+..|++|...|..|+|+|+|++|+|+|.|.+-|+||+++ +..+....||...|.+|+|++||. +++||+.|..-||||
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWD 331 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheee
Confidence 999999999999999999999999999999999999999 666777789999999999999998 888999999999999
Q ss_pred CCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 753 INNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 753 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
+|+|+|+..|.+|...|..+.|+.. ..+.+++.|+.++|||.+........ ..+...++. +.+.+..+.+|+
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~----Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQ----VKYSPQEGYFLV 404 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhh----eEecccCCeEEE
Confidence 9999999999999999999998855 46778999999999997755442111 123333443 333455678999
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
|++.|++|+||...+
T Consensus 405 TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRT 419 (459)
T ss_pred EcccCcceeeecCCC
Confidence 999999999997654
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-28 Score=242.32 Aligned_cols=287 Identities=22% Similarity=0.286 Sum_probs=207.4
Q ss_pred CCCCcceEEEecCCCeEee-cCCC---eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEec
Q 003106 552 GTTSKPLMMFGTDGAGTLT-SPSN---QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~-~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~ 622 (847)
|...+..++..+.+..++. ++.+ -+|++..-+......-....| +...| .+..+.|+ +++.|+++|+||+
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccceEEEEEe
Confidence 3344566666666555444 3333 468886543222111111122 22222 12344555 7999999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEEEcCC--CCEEEEE
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPS--MPRLATS 698 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~--~~~Lasg 698 (847)
.++ +....|.+|...|.+++|++|.+.|++|+.|++|++|++. +.+..++..+ .+.|+||+|+|+ ..+|+++
T Consensus 93 ~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 93 ATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred cCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 988 6778899999999999999999999999999999999987 4555555433 789999999998 5689999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
+.|++|++||+++ .+....+.||.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+. +...|.++.|.+..
T Consensus 169 s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 169 SWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred cCCceEEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 9999999999998 777889999999999999999987 77899999999999999999977765 55667778777766
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCC--CCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGS--DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
...+...+..|+|||...............+. ......+.++++.. ++..|++|-.|+.|++|.++.|
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv~~~ 315 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQVAKS 315 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEeecC
Confidence 66666677779999965433222222111111 11111111222222 6788999999999999999865
No 6
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.3e-29 Score=264.21 Aligned_cols=273 Identities=16% Similarity=0.257 Sum_probs=224.4
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~ 624 (847)
...+..+.|.|+|+.++++... .||+.....+...+ -.+|..|+.. +++++ ++..+|+|++|+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn- 168 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN- 168 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh------hhhcccceeEEEccCCCEEEEcCCCceEEecccc-
Confidence 3456789999999999886544 78998665544321 1244445543 45555 78899999999984
Q ss_pred CceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+..+..+.+|. ..|+|++|+|....|++|++||+|+|||....+..+.+.+|...|.||+|+|....||+++.|..
T Consensus 169 ---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 169 ---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred ---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence 34666666665 89999999999999999999999999999988888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe--cCCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA--MNRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~ 781 (847)
|++||.++ +.|+.++.+|+..|..+.|++++. +|++++.|..++++|+++.+.+.++++|...++++.+ .....+.
T Consensus 246 VKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eEeecCCC-cchhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 99999999 899999999999999999999995 6679999999999999999999999999999999864 4567788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..+|.|..|....... ...... .....+|++.+++ -+.+|++|+.|.++++|.-
T Consensus 324 sgg~Dgsvvh~~v~~~~p--~~~i~~----AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEP--LGEIPP----AHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccCCCceEEEecccccc--ccCCCc----ccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 999999999998652111 111111 1234578888888 5889999999999999964
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.5e-28 Score=275.71 Aligned_cols=267 Identities=24% Similarity=0.327 Sum_probs=209.7
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...++..|++|++.++.+-.+ ++|.+...++...-+ . .+....++...|-.+...|-..+ ..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~----~--------~~l~~~d~~sad~~~~~~D~~~~---~~ 443 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD----A--------SDLSNIDTESADVDVDMLDDDSS---GT 443 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccc----h--------hhhccccccccchhhhhccccCC---ce
Confidence 345778899999977665444 889987543222100 0 01111122222333444444433 34
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
..++.+|.++|..+.|+||.++|++|+.|++||+|.+++..++..+++|..+|++|.|+|-|-+|||++.|++.++|..+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcE
Q 003106 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDI 789 (847)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i 789 (847)
. ..+++.|.||-+.|.|+.|||+.. ++++||.|.+||+||+.+|.+++.|.+|...|.++.+.. +..+.++.+++.|
T Consensus 524 ~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 H-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred c-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 8 788999999999999999999976 677999999999999999999999999999999999875 4567789999999
Q ss_pred EEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 790 QISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 790 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+||..... .+..+.. +...+.+ +.+. .++.+||+|+.|.+|++||+.
T Consensus 602 ~iWDl~~~~--~v~~l~~-Ht~ti~S----lsFS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 602 KIWDLANGS--LVKQLKG-HTGTIYS----LSFS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEcCCCc--chhhhhc-ccCceeE----EEEe-cCCCEEEecCCCCeEEEEEch
Confidence 999966322 2222211 1333333 3332 378999999999999999974
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=236.24 Aligned_cols=276 Identities=18% Similarity=0.251 Sum_probs=216.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
|...+..+.|++|.+.+++++-+ -|||..+......+..- ..=...+.+++.+ .++.|....||++.+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 33456789999999999998766 67999877654432210 0011233455554 677788888898875
Q ss_pred Cc---eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeC
Q 003106 625 GF---SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSF 700 (847)
Q Consensus 625 ~~---~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~ 700 (847)
.. ..+..+.+.+|++.+.||.|-. ...|+|++.|.++.+||+++++.+..|.+|.+.|.+|+++| +++.|++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 41 3456677899999999999986 56899999999999999999999999999999999999999 8999999999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEecC-C
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMN-R 777 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~-~ 777 (847)
|++.+|||+|. +.++.+|.+|.+.|++|+|.|+|. -|++|+.|+++|+||+|....+..|.... ..|.+++|.. .
T Consensus 208 D~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 208 DKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccceeeeeccC-cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 99999999998 799999999999999999999987 46699999999999999999888887553 3467777764 4
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
..++++..+..+.+||...... ..... -+...++.. . ...++..|++|+.|.+||||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~--vg~L~-GHeNRvScl----~-~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGER--VGVLA-GHENRVSCL----G-VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccce--EEEee-ccCCeeEEE----E-ECCCCcEEEecchhHheeecC
Confidence 5667889999999999653322 11111 112222221 1 234788999999999999993
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=245.67 Aligned_cols=280 Identities=22% Similarity=0.262 Sum_probs=225.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|..-+.++++.|-..++++++.+ +|||+.++.+...+...++. |+ +.++.-. +++.|+.|++||++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~------vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET------VRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe------eeeeeecccCceEEEecCCCeeEEEech
Confidence 33456788999999999998877 89999999887665432221 11 1111111 67899999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. +.++.+.+|-..|.|++.+|.-+.|+||+.|.++||||+++...+.++.+|...|..|.+.|....+++|+.|++
T Consensus 224 ~n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 224 YN---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hh---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 77 688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
||+||++. ++...++..|...|.+++.+|.. ++|++++.| .|+-|++..|..+..+.+|...+.++....+.+++++
T Consensus 301 vrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEc
Confidence 99999998 78888999999999999999994 478788876 7999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.++|.+..||......--+.... -.++-.....++...+. ..+..|++|..|.+|++|+.
T Consensus 378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD-ktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD-KTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred CCceEEEEEecCcCcccccccccccCCccccccceeEEeec-ccCceEEeccCCcceEEEec
Confidence 99999999995543321111111 11222222222221111 24678999999999999985
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=265.88 Aligned_cols=280 Identities=23% Similarity=0.380 Sum_probs=217.5
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+.|++||+.+++...+ ++|+...... .....+ .+.......+-+++++ +++.|+++++||+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~- 234 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD- 234 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccC-
Confidence 4566778999999998776555 7899966652 111111 2222233334455565 789999999999933
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
..+.+.++++|...|+||+|+|+|++|++|+.|++|+|||+++++++..+.+|.+.|++++|++++.+|++++.|+.|+
T Consensus 235 -~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 235 -DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred -CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 3378889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCc--eEEEeccCCCC--eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE----ecCC
Q 003106 706 VWDADNPGY--SLRTFMGHSAS--VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN----AMNR 777 (847)
Q Consensus 706 iWD~~~~~~--~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~----~~~~ 777 (847)
|||+.+ +. ++.++.++... |+++.|+|++.+++ ++..|++|++||++.+.++..+.++...++|+. ....
T Consensus 314 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 314 VWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEECCC-CceeeeecccCCCCCCceeEEEECCCCcEEE-EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 999998 55 56777777665 99999999998655 888899999999999999999998877544442 3366
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe--CCCeEEEEEccC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC--GDSSLSSFIAGT 846 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs--~DG~V~vW~~gt 846 (847)
..++++..++.|.+|+.... ........+....+.. +.+++ ...++++++ .|+.|++|+...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~--~~~~~l~~h~~~~~~~----~~~~~-~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSG--GILQRLEGHSKAAVSD----LSSHP-TENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred CeEEEEeCCceEEEEeCCcc--chhhhhcCCCCCceec----cccCC-CcCeeeecCcCCCceEEEecCCC
Confidence 78899999999999997642 2222222211222222 22333 577888887 899999998753
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=227.44 Aligned_cols=278 Identities=18% Similarity=0.270 Sum_probs=217.1
Q ss_pred CcceEEEecC-CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccCC
Q 003106 555 SKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
....++|.|- |..+++.+.+ +||+...+..... ...+ ++.+.+.|+.. +++.+ +++.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-k~vl-d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-KTVL-DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE-EEec-cccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 5788999998 8878887766 8999986332221 1122 22455555543 44444 7889999999998877
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.|+++.++++|...|.|++|+++|++||||+.|+.|-||.++. .+++..+..|...|.-|.|+|...+|+++++|.
T Consensus 94 -efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 94 -EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred -ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 8999999999999999999999999999999999999999873 467888999999999999999999999999999
Q ss_pred cEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 703 TVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 703 ~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
+|++|+-.. .-.++.++.+|...|.+++|++.|.++ ++|+.|++|+||-..+.- -..++..++.+... ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl-~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL-VSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE-EEecCCcceEeeeeccCc----chhcccceEeeeec-ccce
Confidence 999998763 235788999999999999999999755 599999999999866321 12355667777766 6788
Q ss_pred EEEcCCCcEEEEcCCcc-cce---eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFI-NAN---IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~-~~~---~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++..++.|++|..... ... ++......+..++....|+ +...++|++|+.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~----p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN----PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc----CCCCCceeecCCCceEEEEEec
Confidence 89999999999874421 111 2222223355577777777 3346889999999999999874
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.7e-25 Score=254.04 Aligned_cols=237 Identities=26% Similarity=0.337 Sum_probs=192.9
Q ss_pred EEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEE
Q 003106 602 ESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNL 676 (847)
Q Consensus 602 ~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l 676 (847)
++-+++++ .+..++.+++|++.+... .....+.+|...|++++|+||+++|++|+.|++|+|||+ ..+..++++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 34566666 677899999999966532 356667899999999999999999999999999999999 566899999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++|...|++++|+|++++|++|+.|++|||||+++ +.++..+.+|.+.|++++|++++. +|++++.|+.|+|||+.++
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETG 320 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCC
Confidence 99999999999999999999999999999999999 899999999999999999999988 5558899999999999999
Q ss_pred c--eEEEEeeCCce--EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 757 S--CTRVFKVESFC--CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 757 ~--~~~~~~~~~~~--v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
. ++..+..+... +.++.+. +...++.+..++.+.+|+........... ++... + ...++ .+....+.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~--~-~~~~~-~~~~~~~~~i~ 395 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNL--V-RCIFS-PTLSTGGKLIY 395 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCc--c-eeEec-ccccCCCCeEE
Confidence 9 66777766554 7777774 56788999999999999966433222211 11111 1 11112 22244788999
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
+|+.|+.|++|+..+
T Consensus 396 sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSS 410 (456)
T ss_pred EEeCCceEEEEeCCc
Confidence 999999999999864
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=4.3e-26 Score=234.13 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=190.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|++++|||+.++ ....++.+|...|..++|++--.||++++.|+.|+.||++..+.++.+.+|-+.|.|++.+
T Consensus 168 tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh 244 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH 244 (460)
T ss_pred ecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc
Confidence 7889999999999988 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|.-+.|++|+.|.++||||+++ ...+.++.||...|.+|.+.|....+ ++|+.|++|++||++.|+...++..|...+
T Consensus 245 PTldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 245 PTLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred ccceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCceeEeeeccccee
Confidence 9999999999999999999999 78899999999999999999987755 499999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++........++......|+-|+... ..+...+.. +...+. .+... .+.++++|+..|.|.+||..
T Consensus 323 ral~lhP~e~~fASas~dnik~w~~p~--g~f~~nlsg-h~~iin----tl~~n--sD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDNIKQWKLPE--GEFLQNLSG-HNAIIN----TLSVN--SDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eEEecCCchhhhhccCCccceeccCCc--cchhhcccc-ccceee----eeeec--cCceEEEcCCceEEEEEecC
Confidence 999988888888777777888887432 111111111 111111 11111 47899999999999999974
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=222.55 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v 686 (847)
+++.|..||+|+...+.++.+...+ .+|+..|+.++|+|.|++||+||+|.++.||.-. ..+++.++++|...|.||
T Consensus 32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV 111 (312)
T ss_pred eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence 6788999999999866577777666 4899999999999999999999999999999865 468899999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC---CCceEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~---~~~~~~~ 761 (847)
+|+++|++||+|+.|+.|-||.+.. ...++..+.+|...|..+.|||... ||++|+.|++|++|+-. ...|+.+
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 9999999999999999999999983 3467888999999999999999855 88899999999999876 3469999
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+.++...|+++.|++ +.++.++++++.+.||... +.....++..++...|. ...|++|++|+.|+
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-------~~~~~~~sr~~Y~v~W~-------~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-------TDLSGMHSRALYDVPWD-------NGVIASGGGDDAIR 256 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeec-------cCcchhcccceEeeeec-------ccceEeccCCCEEE
Confidence 999999999999987 4589999999999999743 22222333444444454 56799999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+|..
T Consensus 257 lf~~ 260 (312)
T KOG0645|consen 257 LFKE 260 (312)
T ss_pred EEEe
Confidence 9975
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-25 Score=223.88 Aligned_cols=225 Identities=17% Similarity=0.179 Sum_probs=183.9
Q ss_pred CCCCCCcEEEEeccCC--ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQG--FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~--~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++.+|.++.+|++... .....++.+++|...|..++.++||.+.++++.|+++++||+.+++..+.|.+|...|++|+
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 5788999999998764 22356888999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC--CCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|++|.+.|++|+.|++|++|++.. .+..+...+ .+.|.||+|+|+. +-+|++++.|++|++||+++.+....|-+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 999999999999999999999985 455555433 7899999999985 44778999999999999999999999999
Q ss_pred CCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|...+..+.+..+ ..+..+..+|.+.+||...... ...+ .+...+.+.++. + .++.++...+-.|+||+
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fs----p--nrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFS----P--NRYWLCAATATSIKIWD 260 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEec----C--CceeEeeccCCceEEEe
Confidence 9999998887654 4566788999999999764333 1111 122333333333 2 45666666777799999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
..+
T Consensus 261 l~~ 263 (315)
T KOG0279|consen 261 LES 263 (315)
T ss_pred ccc
Confidence 864
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=5.4e-25 Score=221.31 Aligned_cols=234 Identities=19% Similarity=0.232 Sum_probs=193.6
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC---CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
-+-..+|+|.|.+++.++-+ .||++.+.+........-+...+.+.+.+. +..|. +++.|.+..+||++++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g-- 176 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG-- 176 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc--
Confidence 34567899999999998877 788887553222111111222344444433 33344 8999999999999988
Q ss_pred eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..+..|.+|.+.|.+|+++| +++.|++|+.|+..+|||++.+.++.+|.+|...|++|+|.|+|.-|++|++|+++|+
T Consensus 177 -~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 177 -QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRL 255 (343)
T ss_pred -eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEE
Confidence 67888999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 707 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
||+|. ...+..|.. ....|++|+|+..|+ ||++|..|.++.|||.-.++.+..+.+|...|.|+.... ...+.++
T Consensus 256 yDlRa-D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 256 YDLRA-DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred EeecC-CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 99998 666777752 345799999999987 555888899999999999999999999999999998764 4567788
Q ss_pred cCCCcEEEEc
Q 003106 784 LDAGDIQISD 793 (847)
Q Consensus 784 ~~~g~i~i~d 793 (847)
+-+..+++|.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 8888888883
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-25 Score=241.56 Aligned_cols=271 Identities=17% Similarity=0.273 Sum_probs=217.0
Q ss_pred CcceEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCcee
Q 003106 555 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~ 628 (847)
.+-++.|.|-.-++++ .+...||+.++-..+..+.-. ......+.|..... +++.|..|||++..++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--- 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--- 87 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----ccchhhheeeeccceEEEecCCceEEEEecccc---
Confidence 4456677777777655 466799999988776654321 11112222333332 7888999999999966
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~i 706 (847)
+.+..|.+|.+.|+||+.+|.-.+++|+|+|-+|++||.+. ..+..+|++|+..|++|+|+|. .+.||++|.|++|+|
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 78999999999999999999999999999999999999984 5788899999999999999996 568999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEc
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 784 (847)
|.+.. ..+..++.+|...|+||+|-+.|+ -+|+||++|.+|+|||..+..|+.++.+|...|.++.+.+. ..+.+++
T Consensus 168 Wslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 168 WSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99998 678899999999999999987652 25669999999999999999999999999999999988765 5677999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
+||++++|+............ ...++|.+..+. ..+.+++|...|.|.|
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhc-------CCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 999999999654332222222 235688888776 4556888888887754
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=240.27 Aligned_cols=223 Identities=22% Similarity=0.355 Sum_probs=187.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~f 688 (847)
+++..|.+.+|+.. .+.....+.+|...|+++.|+++|.++++|+.||.|++|+.. ...+..+.+|. ..|++++|
T Consensus 113 tgs~SGEFtLWNg~---~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGT---SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAF 188 (464)
T ss_pred eecccccEEEecCc---eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheecc
Confidence 67788899999974 445555678999999999999999999999999999999976 34444555554 88999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|+...|++|++||+|+|||... .+.-+.+.||.-.|.+++|||... +|++++.|..|++||.+++.|+.++.+|..+
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccce
Confidence 99999999999999999999997 555677799999999999999966 7889999999999999999999999999999
Q ss_pred EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|..+.+. +...+.+++.|..++++|.+. -..+++..+ +..++ +++.++++.+.+|.+|+.||.|.+|.++
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~--Hkkdv----~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRG--HKKDV----TSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhc--chhhh----eeeccccccccceeeccCCCceEEEecc
Confidence 9998875 457889999999999999773 223333322 23334 4455568899999999999999999986
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.3e-26 Score=236.61 Aligned_cols=216 Identities=21% Similarity=0.326 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++.+|.+|++||..+ ..++..+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.++..|...|..+.|+
T Consensus 212 SGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred cccccCceEEecccc---HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 789999999999884 46788899999999999994 6799999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
..++++++.|.+|+|||+..+. .+.+.+.||...|+.|.|+.. ++++++.|.+|++|++.++++++++.+|..
T Consensus 287 --ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 --NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred --CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceeeehhhhcccc
Confidence 4589999999999999998743 234667899999999999854 778999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.|+.+ .+..+.+|+++..|++||....... ..-.+ +... +.|...++..|++|+.||+|+||++.+
T Consensus 362 GIAClQY-r~rlvVSGSSDntIRlwdi~~G~cL-RvLeG--HEeL-------vRciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 362 GIACLQY-RDRLVVSGSSDNTIRLWDIECGACL-RVLEG--HEEL-------VRCIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred cceehhc-cCeEEEecCCCceEEEEeccccHHH-HHHhc--hHHh-------hhheeecCceeeeccccceEEEEeccc
Confidence 9999875 4457789999999999996532111 01111 1111 334455688899999999999999753
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.5e-25 Score=227.68 Aligned_cols=276 Identities=16% Similarity=0.200 Sum_probs=221.6
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+.|.|+-...+.++. .++||..++++...+..... ....+.+...+ +++.|-.+.+||..+.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----SVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----ceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 345567777887776666543 38999999998665543321 11222222222 6777888999999863
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+++.+.+|...|.+++|-|-|.+|++++.|.+|+.|+++++.++.+|.+|...|.-|+.+.||..+++|+.|.+|+
T Consensus 183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 183 --FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred --HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecC--------------CCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPN--------------KDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~--------------g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
+|-+.+ +.+...+.+|.-.|.+++|.|. +..++++++.|++|++||+.++.|+.++.+|..+|..
T Consensus 261 vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 261 VWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 999998 7788889999999999999763 2247789999999999999999999999999999999
Q ss_pred EEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 772 VNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 772 ~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+++.. +.+++++.+|+.+++||........... .+..++++..++ . ...++++|+-|-++++|.-
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---ah~hfvt~lDfh----~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---AHEHFVTSLDFH----K-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---CCcceeEEEecC----C-CCceEEeccccceeeeeec
Confidence 99874 5578899999999999966433222111 223334443333 2 3458999999999999974
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.6e-26 Score=233.51 Aligned_cols=270 Identities=20% Similarity=0.307 Sum_probs=203.2
Q ss_pred CcceEEEecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCcee
Q 003106 555 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~ 628 (847)
.+..-++--|...++.+ +..+|||..+..+...+. ++.+.|.+.-..+. +++.|.+|++||+.++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~------GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT------GHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhh------cCCCcEEeeeccceEEEecCCCceEEEEeccCC---
Confidence 33444444444444443 344999999877665422 13333433322221 7889999999999988
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+++.++-+|...|..+.|+ ..+++|++.|.+|.|||+.... +.+.+.+|...|+.|.|+ .++|++++.|.+|+
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 6788888999999999997 4599999999999999998543 445678999999999997 55999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 785 (847)
+|++.+ .++++++.+|...|.|+.+. .+++++|+.|.+|++||+..|.|++.+.+|...|.|+.|++. .+.+|..
T Consensus 344 vW~~st-~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k-rIVSGaY 418 (499)
T KOG0281|consen 344 VWSTST-CEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVSGAY 418 (499)
T ss_pred EEeccc-eeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-eeeeccc
Confidence 999999 88999999999999888875 348889999999999999999999999999999999997654 6779999
Q ss_pred CCcEEEEcCCccccee-e-ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 786 AGDIQISDSLFINANI-F-CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 786 ~g~i~i~d~~~~~~~~-~-~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|.|++||........ . ...-.......+.+++.+ ..++..|++++.|.+|.||+.-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL---QFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL---QFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEE---eecceEEEeccCCCeEEEEEcC
Confidence 9999999944221110 0 000000111122233332 3356679999999999999963
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=4.6e-24 Score=262.25 Aligned_cols=282 Identities=17% Similarity=0.203 Sum_probs=208.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhc-c--ccccccCCCCCceEEeeecCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRAD-M--DRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~-~--~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd 621 (847)
+...+..++|++||.++++++.+ +|||+........ . ......+.......+|...++ +++.|++|++||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 56668899999999999887766 8999864211100 0 000001111111223333322 677899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc-CCCCEEEEEe
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSS 699 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs-p~~~~Lasgs 699 (847)
+.++ +.+..+.+|.+.|++|+|++ ++.+|++|+.|++|+|||+.++..+..+..+ ..|.++.|+ +++.+|++|+
T Consensus 562 ~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 562 VARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred CCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 9876 56778889999999999997 7899999999999999999999988888755 679999995 5689999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC------CceEEEEeeCCceEEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSCTRVFKVESFCCWCVN 773 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------~~~~~~~~~~~~~v~~~~ 773 (847)
.||+|++||+++....+..+.+|...|.++.|. ++. +|++++.|++|+|||++. +.++..+.+|...+.++.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999997554677888999999999997 445 566999999999999985 357788888888887777
Q ss_pred ec-CCCEEEEEcCCCcEEEEcCCcccceeeeccc----------ccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 774 AM-NRPCLWDKLDAGDIQISDSLFINANIFCGLG----------WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 774 ~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+. ....+.+++.++.+.+|+...........+. ..+...+....|+ + ++.+|++|+.||.|+||
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws----~-~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR----G-QSSTLVAANSTGNIKIL 790 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc----C-CCCeEEEecCCCcEEEE
Confidence 65 3567889999999999995432111110000 0011223333343 3 67889999999999999
Q ss_pred Ec
Q 003106 843 IA 844 (847)
Q Consensus 843 ~~ 844 (847)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 85
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.2e-25 Score=252.59 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=175.9
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 675 (847)
.+.+-++++. +++.|+++|+|.+.+ +.++..+++|..+|+++.|+|-|-+|||||.|++.++|..+..++++.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 3444455555 899999999999984 578888999999999999999999999999999999999999999999
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|.+|-+.|.|+.|+|+..++++||.|.+||+||+.+ +..++.|.||.+.|++|+|+|+|. +|++|+.||.|+|||+.+
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCC
Confidence 999999999999999999999999999999999998 889999999999999999999987 567999999999999999
Q ss_pred CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcc
Q 003106 756 GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~ 797 (847)
++.+..+.+|...+.++.|.. +..+.++..+..|++||....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999998874 456778888899999995543
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=241.92 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=196.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++...|.|.||+.++. ..++.+.-..-+|+++.|-...++|++|++|..|+||+..+++.+..|+.|.+.|.||+.+
T Consensus 30 a~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavH 106 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH 106 (794)
T ss_pred EeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeec
Confidence 4567889999999976 6777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|...+++|+|+|-+|++||.+..-.+..+|.||...|++|+|.|.....|++|+.|++|+||.+....+..++.+|...|
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 99999999999999999999987788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC---EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNAMNRP---CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~~~~~---~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.|+.+.... ++.++.+|..+++||.....+... -.+ +...+....+ ++ .-.+|++|+.||+||||...|
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-LeG--Ht~Nvs~v~f----hp-~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-LEG--HTNNVSFVFF----HP-ELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-hhc--ccccceEEEe----cC-CCcEEEEecCCccEEEecCcc
Confidence 999987554 999999999999999654322111 111 1222222222 22 456899999999999999998
Q ss_pred C
Q 003106 847 Y 847 (847)
Q Consensus 847 y 847 (847)
|
T Consensus 259 y 259 (794)
T KOG0276|consen 259 Y 259 (794)
T ss_pred e
Confidence 7
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=226.81 Aligned_cols=233 Identities=23% Similarity=0.400 Sum_probs=197.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCC-chhhccccccccCCCCCceEE--eeecCC---CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDL-ELRADMDRLVEDGSLDDNVES--FLSHDD---TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~-~~~~~~~~~~~~g~~d~~v~~--~~s~d~---t~~~d~~v~vwd 621 (847)
.+......+.|...|+++++.+.+ ++||..+. +... .+. ..+..|.+ |+...+ ++++|.+|+.||
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---s~~---gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK---SLI---GHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH---Hhc---CcccceeeEEEEecCCeeeecccccceeEEe
Confidence 344457788999999999988776 78999764 2222 111 12222322 222222 899999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC----------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---------- 691 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~---------- 691 (847)
+.++ .++.++.+|...|..++.+-||.++|+|+.|.+|++|-+.++.+...+++|.-+|.|++|.|.
T Consensus 222 ~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 222 CDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred cccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 9988 688999999999999999999999999999999999999999999999999999999999871
Q ss_pred -----CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 692 -----MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 692 -----~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+.++++++.|++||+||+.+ +.++.++.+|...|..++|+|.|+++ ++|.+|++|+|||++++.|.+++..|.
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccceeeeccCCCc
Confidence 24889999999999999999 89999999999999999999999855 499999999999999999999999999
Q ss_pred ceEEEEEecC-CCEEEEEcCCCcEEEEcC
Q 003106 767 FCCWCVNAMN-RPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 767 ~~v~~~~~~~-~~~l~~~~~~g~i~i~d~ 794 (847)
..+.++++.. ..++.+|+-+..+++|+.
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999864 457888888988998874
No 26
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-25 Score=219.13 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=192.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++..||++++||+. ...+++..+++|+..|.+|.|++ ++..++++|.|++|++||......+.++.+|...|....|
T Consensus 78 ~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 78 AASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF 155 (311)
T ss_pred EEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence 67889999999943 35578999999999999999999 6677889999999999999999999999999999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCC
Q 003106 689 SPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVES 766 (847)
Q Consensus 689 sp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~ 766 (847)
+|. .+.|++++.|+++++||++.+++.+. +..|...|.|++|+.-..++|+||+.|+.||+||+++-+ .+.++.+|.
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 996 67899999999999999999777666 888999999999999999999999999999999999854 778889999
Q ss_pred ceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..|+.+.+.+ ...+.+.+.|-++++|+.......+ .....+..++....|++ .++..+++.+.|+.++||+-
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ETVDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhh--hhhhccceEEecccccc----ccCceeeecccccceeeecc
Confidence 9999998764 4567788888899999855322211 11223556666666764 36789999999999999985
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
+
T Consensus 309 ~ 309 (311)
T KOG0277|consen 309 G 309 (311)
T ss_pred c
Confidence 4
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.1e-25 Score=244.68 Aligned_cols=273 Identities=20% Similarity=0.218 Sum_probs=211.0
Q ss_pred ceEE-EecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEee-ecCC----CCCCCCcEEEEeccCC-c
Q 003106 557 PLMM-FGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFL-SHDD----TDPRDAGGRGMDVSQG-F 626 (847)
Q Consensus 557 ~~v~-~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~-s~d~----t~~~d~~v~vwd~~~~-~ 626 (847)
..++ ++|+..+++.+.. .|++++.+..+. +..| +++.|-... ...+ +++.|.++++|.+..+ .
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~G-H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------IIPG-HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE------EEeC-chhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 3444 4566676655432 288877766543 1112 222232222 1122 8899999999998554 2
Q ss_pred eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-----ee----EEEccCCCCeEEEEEcCCCCEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK-----SK----TNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~-----~~----~~l~~h~~~I~~v~fsp~~~~La 696 (847)
..-++....+|++.|.+++++.. ..+|+++|.|++|++|++...+ .+ .+...|...|+||+++|+.+.||
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 34556677899999999999874 4689999999999999987511 11 12347999999999999999999
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-c
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-M 775 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~ 775 (847)
|||.|++.+||+++. ...+.++.||...|++|.|++... +++|||.|++|+||.+.++.|+++|.+|...|..+.| .
T Consensus 480 T~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ecccccceeeecccC-ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 999999999999996 888999999999999999999865 7889999999999999999999999999988876655 5
Q ss_pred CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 776 NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
++..+.++..+|.|++|+.....+ .. .-+....++|.+.+.+ ...+++||++||.|.+|+.-|
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC--~~-----tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNEC--EM-----TLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhh--hh-----hhhhccceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 677899999999999999653221 11 1234567889988877 566999999999999998754
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.7e-23 Score=221.17 Aligned_cols=273 Identities=25% Similarity=0.404 Sum_probs=210.4
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..++|++++..+++++.+ .+||+.+......+.. ....+ .+.+.+++ +++.++.+++||+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG------HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec------CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 44567899999999988876643 7899987753332211 11222 23333333 56679999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..|...|++++|+|++.+|++++.|+.
T Consensus 82 ~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 82 TG---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cc---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 75 456667789999999999999999999988999999999999999999999999999999999888888888999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE-E
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW-D 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~ 782 (847)
|++||+++ +..+..+..|...|.+++|++++..++ +++.|+.|++||+++++.+..+..+...+.++.+.....++ .
T Consensus 159 i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 159 IKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred EEEEEccc-cccceeEecCccccceEEECCCcCEEE-EecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 99999997 677788888999999999999987555 66679999999999999998888888788888877654444 4
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..++.+.+|+...... ..... .+...+....|+ + ++.+|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~--~~~~~-~~~~~i~~~~~~----~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGEC--VQTLS-GHTNSVTSLAWS----P-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCcee--EEEcc-ccCCcEEEEEEC----C-CCCEEEEecCCCeEEecC
Confidence 44599999999653221 11111 122233333333 3 468899999999999996
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=7.7e-24 Score=208.58 Aligned_cols=255 Identities=17% Similarity=0.258 Sum_probs=194.0
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
+|||...+|.+...+..- |..|- +-+.+|+ .++..-.||+||+.++ ...++.++.+|+..|+++.|..|
T Consensus 22 IRfWqa~tG~C~rTiqh~------dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~-np~Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHP------DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSN-NPNPVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred eeeeehhcCeEEEEEecC------ccceeeEEEcCCcchhhhccCCeeEEEEccCC-CCCceeEEeccCCceEEEEEeec
Confidence 399999999877654421 11121 2233443 5566778999999998 55589999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMS 728 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~s 728 (847)
|+.++|||+||+|||||++...+-+.| .|..+|++|..+|+-..|++|..+|.|+|||+.+ ..+...+ ......|.+
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHELIPEDDTSIQS 172 (311)
T ss_pred CeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccC-CccccccCCCCCcceee
Confidence 999999999999999999997776666 4779999999999999999999999999999998 4444433 445578999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCC------ceEEEEeeCCceE-EEEEecCCCEEEEEcCCCcEEEEcCCccccee
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNG------SCTRVFKVESFCC-WCVNAMNRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~------~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
+...|||..+ +.+...|...+|++-+. +++..|..|...+ .|+...+...+.+.+.+.+++||+.... ...
T Consensus 173 l~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kl 250 (311)
T KOG0315|consen 173 LTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKL 250 (311)
T ss_pred EEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eee
Confidence 9999999854 46777899999999764 3556677777655 4555556677888999999999986543 111
Q ss_pred eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 802 FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 802 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
... ..+. ..-.|+..+.. ++.+|++|+.|+.+++|++.
T Consensus 251 e~~--l~gh---~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 251 ELV--LTGH---QRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEE--eecC---CceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 111 1011 12356655444 78999999999999999975
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=3.3e-24 Score=227.61 Aligned_cols=280 Identities=16% Similarity=0.261 Sum_probs=216.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC----eEEeCCC----Cchhhcccccc----ccCCCCCceEEe-eecCC----CCCCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN----QLWDDKD----LELRADMDRLV----EDGSLDDNVESF-LSHDD----TDPRD 614 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~----~~~~~~~~~~~----~~g~~d~~v~~~-~s~d~----t~~~d 614 (847)
+...+...+|.|-...+++.+.. ++|++.. +.....+.... .+......|.+. +..++ ++..+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 55667888999977755554433 8998865 11111112111 222222334433 34444 78899
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----------------------- 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----------------------- 671 (847)
|.+|+|+.... .+.++..|+++|.+|.|+.+|++|++++.|+++.|||..++.
T Consensus 257 G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 257 GEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred cEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 99999998654 677888999999999999999999999999999999985432
Q ss_pred ------------------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec
Q 003106 672 ------------------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733 (847)
Q Consensus 672 ------------------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp 733 (847)
++.++.+|.+.|.+|.|+|.+.+|+++++|++++||.... ..+...+.+|...|+.+.|+|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecC
Confidence 2344667999999999999999999999999999999987 778889999999999999999
Q ss_pred CCC--------eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeec
Q 003106 734 NKD--------DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCG 804 (847)
Q Consensus 734 ~g~--------~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 804 (847)
+|. ..+++++.|++|++||+..+.++++|..|...|+++++.+ ..++..+..+|.|.+|+.... .++..
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~--~l~~s 489 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG--KLVKS 489 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch--heeEe
Confidence 763 3677999999999999999999999999999999999875 557789999999999996532 22222
Q ss_pred ccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 805 LGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 805 ~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
. .+...+....|+ +++..|..+-.||.|+|-++.
T Consensus 490 ~--~~~~~Ifel~Wn-----~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 490 Y--QGTGGIFELCWN-----AAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred e--cCCCeEEEEEEc-----CCCCEEEEEecCCCceEEEec
Confidence 1 123334556666 467889999999999998875
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=208.58 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=209.3
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceee
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~ 629 (847)
...+..+.|.-||.+.++.+.+ ++|+...+.+..++...... .+|..+..-.+.-.+++.|..+.+||+.+| +
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E-VlD~~~s~Dnskf~s~GgDk~v~vwDV~TG---k 92 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE-VLDAALSSDNSKFASCGGDKAVQVWDVNTG---K 92 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce-eeeccccccccccccCCCCceEEEEEcccC---e
Confidence 3467889999999999998877 89999998877764432110 011111111112227899999999999988 7
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
.++.+++|.+.|+.++|+.+...+++|+.|.+|++||.+ +.+++..+....+.|.+|... +..|++|+.||++|.|
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 889999999999999999999999999999999999998 467888898889999999987 5689999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce---EEEEEecCCCEEEEEc
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC---CWCVNAMNRPCLWDKL 784 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~---v~~~~~~~~~~l~~~~ 784 (847)
|++. +.....+.+| +|+|++|++++.+.| .++.|++|++.|-.+|+.+..+++|... +.|........++.++
T Consensus 171 diR~-G~l~sDy~g~--pit~vs~s~d~nc~L-a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 171 DIRK-GTLSSDYFGH--PITSVSFSKDGNCSL-ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred Eeec-ceeehhhcCC--cceeEEecCCCCEEE-EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence 9998 6655555554 799999999999777 6778999999999999999999998654 4455556777899999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
++|.+++||.... .....+.... ...+-++.|++....+ +++... .+.+|...
T Consensus 247 EDG~Vy~wdLvd~--~~~sk~~~~~----~v~v~dl~~hp~~~~f-~~A~~~-~~~~~~~~ 299 (307)
T KOG0316|consen 247 EDGKVYFWDLVDE--TQISKLSVVS----TVIVTDLSCHPTMDDF-ITATGH-GDLFWYQE 299 (307)
T ss_pred CCceEEEEEeccc--eeeeeeccCC----ceeEEeeecccCccce-eEecCC-ceeceeeh
Confidence 9999999996633 2333332211 1224456677754444 444333 35556543
No 32
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=219.98 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=218.0
Q ss_pred cceEEEecCCCeEeecCCC---eEEeCCCCchhhcccccccc--CCCCCceEEe-eecCC----CCCCCCcEEEEeccCC
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVED--GSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~--g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..|||||.++++++.+ .+||..+++++.++.--..+ --+|..|.+. ++.|. +++.||.|++|.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 4567899999999998877 78999999998875422111 1134445444 55554 8999999999999988
Q ss_pred ceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 626 FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 626 ~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+++.|. +|+..|+|+.|+.|+..|++++.|.+|+|--+++|++++.|++|++.|+...|.++|.++++++.||+|
T Consensus 296 ---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 296 ---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred ---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 5666664 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCC
Q 003106 705 RVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRP 778 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~ 778 (847)
+||+.++ ..|+.+|+. ..-.|.+|..-|.....++.|...++|.|-++. |..++.|... ...|.|+....+.
T Consensus 373 kvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 373 KVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc
Confidence 9999998 788888864 456789999989888788899999999999987 6778887643 4567777777888
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++..+++.++.|........ .....+ ..++. .+..++ ..+.+++-+.||.+++|+
T Consensus 451 wiYcigED~vlYCF~~~sG~LE--~tl~Vh-EkdvI----Gl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLE--RTLPVH-EKDVI----GLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCcee--eeeecc-ccccc----ccccCc-ccchhhhhcccchhhhcC
Confidence 9999999999888874422211 111111 11111 122233 678899999999999997
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=2.6e-23 Score=223.19 Aligned_cols=279 Identities=19% Similarity=0.310 Sum_probs=208.0
Q ss_pred CCCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCC------ceEEeeecCCCCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDD------NVESFLSHDDTDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~------~v~~~~s~d~t~~~d~~v~vw 620 (847)
.+|....+...|||.|.+++.+. ..||||...-+..-....-+-.|.+++ ..++... ..+++..++++
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av---GEGrerfg~~F 132 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV---GEGRERFGHVF 132 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE---ecCccceeEEE
Confidence 35566778889999999887754 449999976433222111111222211 1111111 23333344433
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
-.++| ..+..+.+|...|++|+|-|... +++||++|++|.+|+=...+...++..|...|.||+|+|||++|++++
T Consensus 133 ~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 133 LWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 33333 45677899999999999999654 699999999999999888899999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc----eEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF----CCWCV 772 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~----~v~~~ 772 (847)
.||+|.|||-.+ ++.+..+. +|.+.|++|+|+||+..++ |++.|.+++|||+.+.++++++..... .+-|+
T Consensus 210 sDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 210 SDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred CCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 999999999998 78888887 8999999999999998665 999999999999999999999976543 45555
Q ss_pred EecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 773 NAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 773 ~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. ...+.+.+.+|.|.+++..... ......++ ...+++... ..++.+|++|+.||.|.-|+.++
T Consensus 288 Wq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GH--nK~ITaLtv-----~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 288 WQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGH--NKSITALTV-----SPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred Ee--CCeEEEEEcCcEEEEecccCCC-hhheeccc--ccceeEEEE-----cCCCCEEEeeccCceEEEEecCC
Confidence 54 6677888999999999866544 33333333 233333211 23568999999999999999875
No 34
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=5.1e-23 Score=237.16 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=168.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~ 680 (847)
.++.++.+++|++... ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|.
T Consensus 49 gGG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 4667889999998754 467788999999999999996 7899999999999999997532 345678999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 681 SLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 681 ~~I~~v~fsp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..|.+|+|+|++.. |++++.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEE
Confidence 99999999999875 57899999999999998 55566664 567899999999988 5668888999999999999999
Q ss_pred EEEeeCCceEEE--EE---e-cCCCEEEEEcCC----CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 760 RVFKVESFCCWC--VN---A-MNRPCLWDKLDA----GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 760 ~~~~~~~~~v~~--~~---~-~~~~~l~~~~~~----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
..+.+|...+.+ +. + .+...++++..+ +.|.+||.......+... ............|+ +..+.+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D----~~tg~l 277 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYD----ESTGLI 277 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeee----CCCCCE
Confidence 999888754322 21 2 234456655544 369999976433222111 11111111112233 345778
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
+++|++|++|++|++.
T Consensus 278 ~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEEEECCCeEEEEEcc
Confidence 9999999999999973
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.9e-24 Score=240.99 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=197.0
Q ss_pred CCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhh-cccc-------ccccCCCCC------ceEEeeecCCCC
Q 003106 549 PHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRA-DMDR-------LVEDGSLDD------NVESFLSHDDTD 611 (847)
Q Consensus 549 ~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~-~~~~-------~~~~g~~d~------~v~~~~s~d~t~ 611 (847)
...+...++++.||+||+++++++.+ +||.+...+... .+.. +.+.+.++. ...........+
T Consensus 263 ~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 263 SNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 33677889999999999999999877 899997744311 0000 000010100 000000000112
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP- 690 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp- 690 (847)
.....+.+-+..-.+..+++..++||.+.|.+|.|+.+ .+|++++.|++||||++...+++++| .|.+.||||+|+|
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEeccc
Confidence 22222333333333456788899999999999999964 69999999999999999999999988 5999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-----
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----- 765 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----- 765 (847)
|.++|++|+.||.||||+|.. ...+... .-...|++++|.|+|+.. +.|+.+|.+++|+++..+.+..+..+
T Consensus 421 DDryFiSGSLD~KvRiWsI~d-~~Vv~W~-Dl~~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISD-KKVVDWN-DLRDLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCc-CeeEeeh-hhhhhheeEEeccCCceE-EEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 567999999999999999987 4444444 444889999999999854 59999999999999987766554422
Q ss_pred ---CceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 766 ---SFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 766 ---~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
...|+.+.+.. ...|+..+.|..|+|+|..... +++.+. ......-....+ ..++.+|++|+.|..|
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asf-----s~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASF-----SSDGKHIVSASEDSWV 570 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeE-----ccCCCEEEEeecCceE
Confidence 22567666553 3368899999999999975322 222222 211111111112 2278999999999999
Q ss_pred EEEEc
Q 003106 840 SSFIA 844 (847)
Q Consensus 840 ~vW~~ 844 (847)
+||+.
T Consensus 571 YiW~~ 575 (712)
T KOG0283|consen 571 YIWKN 575 (712)
T ss_pred EEEeC
Confidence 99996
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=211.92 Aligned_cols=274 Identities=20% Similarity=0.244 Sum_probs=210.9
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
+...+..+.|.|||..+++++.+ -||++...+...- +-.|.......+-+..|+ +++.|.+++.||+++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEecccccccee----eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 34567889999999999999988 4799764332111 111212222233344444 789999999999998
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
| +.+..+++|.+-|++|+-+.-| .+|.+|+.||+++|||+++...+.++. ....++++.|.-++..+++|+-|+.
T Consensus 122 G---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 122 G---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred c---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 8 7888999999999999955544 467788999999999999988888774 4567999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----CceEEEEeeCC-----ceEEEEEe
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKVES-----FCCWCVNA 774 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~----~~~~~~~~~~~-----~~v~~~~~ 774 (847)
|++||++. ...+.++.||.+.|+.|..+++|..++ +-+-|.+|++||++- .+|+..|.++. ....|-..
T Consensus 198 ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 198 IKVWDLRK-NDGLYTLSGHADTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred eeeecccc-CcceEEeecccCceeeEEeccCCCccc-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999998 788999999999999999999999665 999999999999985 35788887653 34455556
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+...+-+++.++.+++||.......++.+ ++++ .+-.+.+++ .+.+|.+++.|.+|++=+
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklp-Gh~g------svn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLP-GHYG------SVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcC-Ccce------eEEEeeecC-CCcEEEEeccCceeEeec
Confidence 677788899999999999976544333322 2221 122233344 688999999999998744
No 37
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=6.3e-23 Score=235.28 Aligned_cols=207 Identities=19% Similarity=0.300 Sum_probs=157.8
Q ss_pred EEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 003106 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 702 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg 702 (847)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++ ..+..+.+|...|.+|+|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999999754 3567889999999999999985 6899999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE--EEEEecCCCEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC--WCVNAMNRPCL 780 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v--~~~~~~~~~~l 780 (847)
+|+|||+++ +..+..+.+|...|.+|+|+|++. +|++++.|++|+|||+++++.+..+..|.... .++.......+
T Consensus 149 tVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999998 677888999999999999999987 66799999999999999999998888876532 23333333444
Q ss_pred EEE----cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe-CCCeEEEEEccC
Q 003106 781 WDK----LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~----~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~gt 846 (847)
+++ ..++.|.+||.......+... ............|+ + ++.+|++|+ +||.|++|++..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~~~~~~~~~d----~-d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQSSALFIPFFD----E-DTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCCCceEEEEEc----C-CCCEEEEEEeCCCeEEEEEeeC
Confidence 433 246889999976433222111 11011111111222 2 566777776 699999999853
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=206.78 Aligned_cols=226 Identities=22% Similarity=0.277 Sum_probs=179.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~ 687 (847)
+++.|.+||+|...+| ++.+++.-..+-|+.+.+.||++.||+++. -.||+||+.++. ++.+|++|...|++|.
T Consensus 15 sA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 5788999999999988 788888888889999999999999999985 579999999654 6899999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES- 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~- 766 (847)
|..+|+++++|+.||+|||||+|. ..+-+.| .|.++|++|..+|+-..|| +|+.+|.|+|||+++..|...+-...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999998 4555555 5789999999999987666 99999999999999998887776543
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccc-eeeeccccc--CCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINA-NIFCGLGWY--GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~-~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
..+.++... +...+..+...|..++|+...... ..+.+...+ +...+.... .+++..+|++++.|.+|+||
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-----lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-----LSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE-----ECCCCcEEEeecCCceEEEE
Confidence 456666654 456777888899999999543211 111111111 111111111 23478999999999999999
Q ss_pred EccCC
Q 003106 843 IAGTY 847 (847)
Q Consensus 843 ~~gty 847 (847)
...+|
T Consensus 243 n~~~~ 247 (311)
T KOG0315|consen 243 NTDDF 247 (311)
T ss_pred ecCCc
Confidence 98764
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-23 Score=220.70 Aligned_cols=235 Identities=23% Similarity=0.359 Sum_probs=195.9
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccC
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~ 624 (847)
+.|..++.++.|.-+|.++++++.+ -|||+.+++....+.... ...+| .-|...+. +.+.|+.|+|+.+..
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-~~~lD---VdW~~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-APALD---VDWQSNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-CCccc---eEEecCceEeecCCCceEEEEEecC
Confidence 4566688999999999999999888 589999887765543221 11121 23555444 788899999999875
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC---------CEE
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------PRL 695 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~---------~~L 695 (847)
. +++.++.+|.+.|.+|.|+|.|.+|++|++|++++||.+........|.+|+..|..+.|+|+| ..|
T Consensus 349 ~---~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 349 D---RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred C---CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 5 6888999999999999999999999999999999999999999999999999999999999954 468
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA- 774 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~- 774 (847)
++++.|++|++||+.. +.++.+|..|..+|++|+|+|+|+ ++++|+.||.|.||++++++.++.+.+... |..+.+
T Consensus 426 ~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn 502 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWN 502 (524)
T ss_pred EEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCCCe-EEEEEEc
Confidence 9999999999999998 899999999999999999999988 567999999999999999999999987665 333333
Q ss_pred cCCCEEEEEcCCCcEEEEcC
Q 003106 775 MNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~ 794 (847)
..+.++-....++.+.+.|.
T Consensus 503 ~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 503 AAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCCEEEEEecCCCceEEEe
Confidence 34467777778888777664
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=7.6e-23 Score=227.39 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=215.0
Q ss_pred CCcceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..+.|+..|.+++.+... -+|+......+-. -.|.++...++-+++|+ +++.|++|+|||...+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-----QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-----QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-----ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 345678888899999887765 5788876654432 23445555667788887 8999999999999987
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCCC-c
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK-T 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~Dg-~ 703 (847)
.++.++..|+..|+.+.|+.+|+.|++.|-||+|+.||+...+..++|.... -...||+..|.|..+++|+.|. .
T Consensus 383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEE
Confidence 6889999999999999999999999999999999999999999999997554 3368999999999999998776 5
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
|.||++.+ +..+..+.||.++|.+++|+|.+. +|+++++|.+||+||+-... .+.++.. ...+..+.+. ++..+.
T Consensus 460 IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 460 IFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEeec-CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEE
Confidence 99999999 899999999999999999999988 77899999999999996543 3444443 3334555554 455677
Q ss_pred EEcCCCcEEEEcCCcccce--eeecccccCCC----------CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINAN--IFCGLGWYGSD----------EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~----------~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
....+|.|.+||....... +..+....+.. ......+..-|-+.++.+|++|+....|++|++.+
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 8888999999984321110 11111111100 01112233334456899999999999999999854
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=5.5e-24 Score=236.57 Aligned_cols=237 Identities=23% Similarity=0.332 Sum_probs=188.3
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC-----CCCCCCcEEEEeccCC
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-----t~~~d~~v~vwd~~~~ 625 (847)
.+.++....+|..+++++.+ ++|.+.+....... +....++...|... .+..+ +.+.|.++++|++...
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~--~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC--VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhh--hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 33444444677777776655 89988433221110 11111122222221 11111 6889999999999873
Q ss_pred c------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 626 F------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 626 ~------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
. .+....+...|...|+|++++|+.++|||||.|++++||+++......++.+|+..|+||.|++....++|+|
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc
Confidence 1 1222224568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RP 778 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~ 778 (847)
.|++|+||.+.+ ..|+.+|.||...|..+.|-.+++.++ +|+.||.|++|++++++|+.++..|...||.+.... ..
T Consensus 525 gD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 525 GDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred CCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 999999999999 899999999999999999999988555 999999999999999999999999999999998654 34
Q ss_pred EEEEEcCCCcEEEEcCC
Q 003106 779 CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~ 795 (847)
.++++..||.|.+|...
T Consensus 603 ~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeEecCCCeEEEEeecC
Confidence 67789999999999743
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=218.51 Aligned_cols=236 Identities=23% Similarity=0.306 Sum_probs=187.5
Q ss_pred eEEeeecCC----CCCCCCcEEEEeccCCceee-----EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003106 601 VESFLSHDD----TDPRDAGGRGMDVSQGFSFK-----EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 671 (847)
Q Consensus 601 v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~-----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~ 671 (847)
-+..+++|+ +++.||.|.+|+..+|..-+ ....+.-+...|.|+.|+.|...||+|+.||.|+||.+.+|.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 344567777 88999999999998883222 223466788999999999999999999999999999999999
Q ss_pred eeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 672 SKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 672 ~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+++.|. .|+..|+|+.|+.|+..+++++.|.+|||.-++. +++++.|.||.+.|+...|.++|.+++ +++.||+|+|
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkv 374 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKV 374 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEE-EecCCccEEE
Confidence 999997 8999999999999999999999999999999998 899999999999999999999998766 9999999999
Q ss_pred EECCCCceEEEEeeCC--ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 751 WSINNGSCTRVFKVES--FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 751 WD~~~~~~~~~~~~~~--~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|+.++.+|+.+|+... ..|..+... +...+..+.....+++.+...--...+......+++++. .+.++.
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~------~~lSpk 448 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN------AILSPK 448 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE------EEecCC
Confidence 9999999999998654 344444332 334455556666677766432222222222223333332 334557
Q ss_pred CcEEEEEeCCCeEEEEEc
Q 003106 827 ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~ 844 (847)
+.++++.+.|+.++.|.+
T Consensus 449 GewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CcEEEEEccCcEEEEEEe
Confidence 899999999999999876
No 43
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.3e-23 Score=228.87 Aligned_cols=267 Identities=18% Similarity=0.272 Sum_probs=205.4
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+++.++. .++.++. .++|+-...............+.+...++.+. .+. .++.|++|.+|.....
T Consensus 14 ~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 14 KSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred ccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEEecCCC
Confidence 3334444444333 3444433 38999877665543221112222222233333 232 6899999999999865
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
.++.++++|...|+|++...++. |++||+|.+++||.. +++...+.+|...|+++++-|++ .++|||.|++||
T Consensus 92 ---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIk 164 (745)
T KOG0301|consen 92 ---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIK 164 (745)
T ss_pred ---CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceee
Confidence 78899999999999999888877 999999999999976 46666799999999999999988 889999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE-ecCCCEEEEEc
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN-AMNRPCLWDKL 784 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~ 784 (847)
+|.- +.++++|.+|.+.|+.|++-+++. |++|+.||.|++||+ +|+++.++.+|...+++++ ..+...+.+..
T Consensus 165 lWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 165 LWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 9986 457999999999999999999865 459999999999999 7999999999999999998 66778889999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|+++++|+.......+. ..+..+|++.+.. ..-|++||.||.||||.+.
T Consensus 239 EDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~--NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 239 EDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLL--NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCceEEEeecCceEEEEe---------cCccceEEEEEee--CCCEEEeccCceEEEEEec
Confidence 999999998662221111 1234578877654 3448999999999999763
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.7e-23 Score=231.06 Aligned_cols=270 Identities=19% Similarity=0.223 Sum_probs=215.2
Q ss_pred cceEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~ 627 (847)
.-.++|.|.--++++ ++..++||.+=+.+...++. +|+.|+-...+.. +++.|.+|++|+....
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde------HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-- 83 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-- 83 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc------cCCccceeeecCCCCeEEecCCccEEEEEecccc--
Confidence 345677777777766 45669999998887776543 5666666555444 7899999999999866
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+++.++.+|-+.|+.+.|++.-.+|+++|+|-+|+||+..+++++..+++|...|+|..|+|..+.++++|.|-+||||
T Consensus 84 -rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 -RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-------C---------------------ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--
Q 003106 708 DADNP-------G---------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-- 757 (847)
Q Consensus 708 D~~~~-------~---------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-- 757 (847)
|+... + .....+.||...|+-++|+|.-. ++++|++|..|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce
Confidence 98531 1 11345689999999999999977 77899999999999998655
Q ss_pred eEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 758 CTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+.+.++|...|.|+-+.. ...+.+.++|+.|++||......... . .....+.|-++.++ ..+++++| .|
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t-f------rrendRFW~laahP-~lNLfAAg-HD 312 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT-F------RRENDRFWILAAHP-ELNLFAAG-HD 312 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee-e------eccCCeEEEEEecC-Ccceeeee-cC
Confidence 4556778999998887765 46788999999999999654322211 1 11235678888777 45555544 55
Q ss_pred CeEEEEEc
Q 003106 837 SSLSSFIA 844 (847)
Q Consensus 837 G~V~vW~~ 844 (847)
+-+.||++
T Consensus 313 sGm~VFkl 320 (1202)
T KOG0292|consen 313 SGMIVFKL 320 (1202)
T ss_pred CceEEEEE
Confidence 55666665
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=7.2e-23 Score=227.49 Aligned_cols=275 Identities=19% Similarity=0.272 Sum_probs=218.0
Q ss_pred CCCCcceEEEecCCCeEeec--CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 552 GTTSKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~--~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
|...+.+++++.|...++++ ++.+||+.+++.+...+.-. ..-.+.|...|. .+...|.+.++|+...
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG------YILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc------cEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 44567899999999888776 45599999999877654322 111223444443 6888899999999876
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeEEEc-------cCCCCeEEEEEcCCCCE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLE-------EHSSLITDVRFSPSMPR 694 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~-------~h~~~I~~v~fsp~~~~ 694 (847)
..+.++++|.+.|++++.+||++.++|||.|++|++||..- +...+.+. .-...|.|+.+|||+++
T Consensus 445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 56667789999999999999999999999999999999641 21111111 23567999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
||.+-.|.+|+||-+++ -+....+.||.-+|.|++.+||++ +++||+.|.+|+||-+.=|.|.+.|-+|...|.++.|
T Consensus 523 LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred EEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 99999999999999998 566677889999999999999987 7779999999999999999999999999999999988
Q ss_pred cCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 775 MNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 775 ~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+. ..+|++..++.|+-||...... +. .-......+|..+..+ ++.++++++.|.+||+|...
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~kFe~--iq-----~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEKFEE--IQ-----KLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred cccceeEEEecCcceEEeechhhhhh--he-----eeccchheeeeeEEcC-CCCeEEeccCCceeEeeecc
Confidence 765 4678999999999998543211 11 1122345577777666 58999999999999999754
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=199.97 Aligned_cols=220 Identities=20% Similarity=0.291 Sum_probs=179.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|.+|++|+...+ ..++++.+|...|.+++.+.|...|++|+.|+.|.+||+.+|+.++.|.+|.+.|+.|+|+
T Consensus 34 tcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 7899999999999977 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
.+...+++|+.|.+|++||.+.. .+++..+....+.|.+|..... .+++|+.||++|.||+|.|.....+-++.
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sDy~g~p-- 185 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSDYFGHP-- 185 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeehhhcCCc--
Confidence 99999999999999999999863 4567888888899999998743 67799999999999999998766655544
Q ss_pred EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeec-ccccCCCCcccccccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCG-LGWYGSDEIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|.|+.+. +..++..++-++.+++.|... .+++.. .++... .+.+.| ..-....+++|+.||.|++|++-
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~t--GklL~sYkGhkn~------eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKET--GKLLKSYKGHKNM------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccch--hHHHHHhcccccc------eeeeeeeecccceeEEeccCCceEEEEEec
Confidence 5666554 456778888899999988542 222221 122111 122222 22245779999999999999973
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.7e-23 Score=216.07 Aligned_cols=281 Identities=15% Similarity=0.156 Sum_probs=208.1
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEec
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~ 622 (847)
..+...+..+.||++|+++++++.+ -||++.......-...+ .|......-+.+++|+ +++.+..+++||+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee--ecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 3556678999999999999998877 67988654332221222 1223334445567776 8889999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~D 701 (847)
.+|....... .+|...+.|++|.|||..|++|+-|++|..||++ |..+...++-. ..|.++++.+||+++++.+.|
T Consensus 299 ~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 299 DTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred Ccchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9983222211 2356899999999999999999999999999988 44444444432 459999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---eEE-EEEecCC
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF---CCW-CVNAMNR 777 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~---~v~-~~~~~~~ 777 (847)
..|++++.++ ...+.... ....|++++.+.+++.+| +.-.+..|++||++..+.+..+.+|.. .+. |+...+.
T Consensus 376 ~~i~l~~~e~-~~dr~lis-e~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 376 KKIRLYNREA-RVDRGLIS-EEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cceeeechhh-hhhhcccc-ccCceeEEEEcCCCcEEE-EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 9999999987 44443333 346799999999988555 666689999999998888888888754 233 4444566
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+.+|++|+.|+||+.... ..+.... .+...+.++.|+ |.+..++|+|+.||+||||..+
T Consensus 453 ~fiaSGSED~kvyIWhr~sg--kll~~Ls-GHs~~vNcVswN----P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG--KLLAVLS-GHSKTVNCVSWN----PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCC--ceeEeec-CCcceeeEEecC----CCCHHHhhccCCCCeEEEecCC
Confidence 88999999999999996532 2222221 234455565565 6678899999999999999875
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=4.9e-23 Score=208.09 Aligned_cols=208 Identities=23% Similarity=0.318 Sum_probs=170.7
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++..+.+|++.|+++.|+|+|.+||||+.|..|.+|++. ..+...++++|++.|+.|.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445567999999999999999999999999999999965 5566778899999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCC
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAG 787 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g 787 (847)
+++ +++++.+++|...|++++-+.-|..++++++.|+++++||+|+..+++++.... .+.++.+ +....+.++.-++
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccccC
Confidence 999 899999999999999999777788899999999999999999999988885433 3444444 4556788899999
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
.|++||.+........ .+ +.+.++.. . ....+.++.+-+-|.+|++|++..|
T Consensus 197 ~ikvWd~r~~d~~~~l-sG--h~DtIt~l----s-ls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTL-SG--HADTITGL----S-LSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ceeeeccccCcceEEe-ec--ccCceeeE----E-eccCCCccccccccceEEEEEeccc
Confidence 9999997643332221 11 12222222 1 1236788999999999999999876
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.7e-23 Score=201.81 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=179.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
.|.+.|.|+..+..+.+...+. -.+.+.+++|++ ..+.+++++.||+++|||+. ..+++..+++|...|.+|+|++.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 4455566665443444444443 467799999999 45789999999999999965 45788999999999999999986
Q ss_pred C-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 692 M-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 692 ~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
. ..+++++.|++|++||... ...+.+|.||...|+...|+|...++|++++.|+++++||++.......+..|...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 4 4678889999999999987 7789999999999999999999999999999999999999997554555888888888
Q ss_pred EEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 771 CVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 771 ~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|+.+. +...++++..++.|++||.+..+..++.-.++ .-.+ -.+.+.+....+|++++.|-++|||+..
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AV----Rkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAV----RKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEE----EEEecCcchhhHhhhccccceEEecccc
Confidence 87654 66788999999999999988776655544322 2222 2344556677899999999999999863
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=1.1e-21 Score=210.74 Aligned_cols=227 Identities=23% Similarity=0.341 Sum_probs=175.9
Q ss_pred CcceEEEecCCCeEeecCCCe-------EEeCCCCchhhccccccccCCCCCceEE-eeecC-----CCCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQ-------LWDDKDLELRADMDRLVEDGSLDDNVES-FLSHD-----DTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~-------iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d-----~t~~~d~~v~vwd 621 (847)
.+..+.|+.|++.+++.+..| +||.-+ -..++. ++...+.. -+.+. .+++.|.+|.+|+
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~------GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe 176 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN--SVGEIT------GHSRRINSVDFKPSRPFRIATGSDDNTVAFFE 176 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCC--ccceee------ccceeEeeeeccCCCceEEEeccCCCeEEEee
Confidence 456789999999988876552 355432 111110 01111111 11111 1788888888876
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCCCEEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~~~Lasg 698 (847)
|..|+...+++.|..-|.|++|+|||++|||++.||+|.|||=.+++.+..|. +|.+.|.+|.|+||+..|+|+
T Consensus 177 ---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 177 ---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred ---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 44788899999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred eCCCcEEEEECCCCC------------------------------------------ceEEEeccCCCCeEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHPNKD 736 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~------------------------------------------~~~~~~~~h~~~V~sl~fsp~g~ 736 (847)
+.|.++||||+.+.. ..+.++.||...|+++..+++++
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 999999999998731 12345568999999999999997
Q ss_pred eEEEEEeCCCcEEEEECCCCceEEEE-eeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 737 DLICSCDGDGEIRYWSINNGSCTRVF-KVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 737 ~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
+ |++|+.||.|.-||..++.+-+.. +.|...|.++.......+++..-|..+++.+
T Consensus 334 ~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 334 T-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS 390 (603)
T ss_pred E-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence 5 559999999999999998866655 6777788888777666666666666666654
No 51
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=1.2e-21 Score=217.94 Aligned_cols=222 Identities=22% Similarity=0.259 Sum_probs=183.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
.++.-|-+-||++.+. ..+....+|...|+|++++|||.+||||++||+|+|||..++-|+.+|..|+..|+.+.|+
T Consensus 325 g~~klgQLlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred cCCccceEEEEEeecc---ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 4555678899998865 4566678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCC-cEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDG-EIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~~~~~~~~~~~~~~ 767 (847)
..++.|++.|.||+||.||+.. ....++|..-. ....||+..|.|. ++++|+.|. .|.||++.+|+.+..+.+|.+
T Consensus 402 ~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 9999999999999999999997 77888886543 3467889999987 676787774 699999999999999999999
Q ss_pred eEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.|.++.+. ....+++++-|.+|++|+.......+... .+...+..+.+.| ++.-|+++.-||.|.+||.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-------EIRSDVLAVSFRP-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-------eeccceeEEEEcC-CCCeEEEEEecceEEEEEh
Confidence 99998766 34578899999999999965432222111 1112222344445 6888999999999999997
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=4.5e-22 Score=228.65 Aligned_cols=220 Identities=21% Similarity=0.277 Sum_probs=186.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++..+.++++||..++ ..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++|||+.++.+..++.+|.+.|.++..
T Consensus 223 ~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred ecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 6778889999999876 45555 9999999999999887889999999999999999999999999999999999987
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
. ..++++|+.|.+|++|++.+ +.++.++.+|.+.|.+|..+ +. ++++|+.|++|+|||+++++|++++.+|...
T Consensus 300 ~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 300 D--PFLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred c--CceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 6 44788899999999999998 88999999999999999998 33 7779999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
|.++.+.....++.++.++.|++||..... .+.....+...+. + ...+...+|++++.||+|++||..++
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v---~---~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLV---S---SLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCcccc---c---ccccccceeEeccccccEEEeecccC
Confidence 999977766889999999999999976542 2222222222111 1 23345788999999999999998653
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.5e-22 Score=204.53 Aligned_cols=282 Identities=21% Similarity=0.281 Sum_probs=199.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccc--------------cccccCCCCCceEEeeecCC-----
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMD--------------RLVEDGSLDDNVESFLSHDD----- 609 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~--------------~~~~~g~~d~~v~~~~s~d~----- 609 (847)
|.......+|++||..+++++.+ +|+|+..+....... +.+++. .+.|.....+..
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH--~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH--VDEVNDLDFHPRETILI 188 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc--cCcccceeecchhheEE
Confidence 34456678999999999998877 889987432211111 111111 111211111111
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v 686 (847)
++++|++|+++|..+. ..+.....-.....|.||.|+|.|.+|+.|.+..++++||+++.++...- ..|++.|++|
T Consensus 189 S~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred eccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 7899999999999876 33333333345678999999999999999999999999999998876543 3699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-cCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+++.+++.++++.||.|+|||--. .+|+.++. .|. +.|++..|..+++++| +.+.|..|++|.+.+++++.++.+
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEec
Confidence 9999999999999999999999887 77888774 454 5799999999998665 888999999999999999999987
Q ss_pred CCceE------EEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 765 ESFCC------WCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 765 ~~~~v------~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
....- ..+......+ ++-....+.+..||.+..........++.+. ..|- .+++.+..|++|+.|.
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i--~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWI--VHSPVEPAFMTCSDDF 418 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEE--EeCCCCCceeeecccc
Confidence 63211 1222222233 3333445668888877555444444443221 1222 1445677899999999
Q ss_pred eEEEEEcc
Q 003106 838 SLSSFIAG 845 (847)
Q Consensus 838 ~V~vW~~g 845 (847)
.+|+|...
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999753
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=3.8e-22 Score=207.11 Aligned_cols=226 Identities=17% Similarity=0.269 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCcee----EEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~~~----~~l~~h~~~ 682 (847)
++..||.+++||... +...++.+|.++|.+++|.-. ...|++++.|.++++|-++.+..+ ....+|...
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS 195 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence 788999999999854 688899999999998888653 346999999999999998865433 334599999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------------CceEEEeccCCCCeEEEEEecCCCeE
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~------------------------~~~~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
|-+|+..+++.++++|+.|.+|+||+..+. +.++.++.||...|.+|.|++. ..
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v 273 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TV 273 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--Cc
Confidence 999999999999999999999999993321 2346778899999999999984 36
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPS 817 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 817 (847)
+++++.|.+|++||+.++.++..+.+... ..|+.... ...+.+++.+..+++||.+.....+.......+..-+....
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcc-eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 67999999999999999999888876554 55565443 45677899999999999776655554443333455666666
Q ss_pred cccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 818 WKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 818 w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
|+ +.++..|++|+.|+++++||+.+
T Consensus 353 ws----p~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 353 WS----PTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred cC----CCCceEEEEEecCCeEEEEEecc
Confidence 66 55788999999999999999864
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=7e-22 Score=227.05 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=194.5
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeec--CC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSH--DD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~--d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
++||..++..... .-..+.+.|..+... ++ ++..|.++++||+.++ .+..++.+|.+.|.|+...
T Consensus 231 ~~~~~~~~~~i~~-----~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~~~~-- 300 (537)
T KOG0274|consen 231 HLWDLNNGYLILT-----RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCLTID-- 300 (537)
T ss_pred EEeecccceEEEe-----eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEEEcc--
Confidence 6899988765542 011233334433222 32 7889999999999887 7889999999999999875
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++++|+.|.+|+||++.++..+.++.+|.+.|.+|.++ +.+|++|+.|++|+|||+.+ +.++.++.+|...|+++
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSL 377 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEE
Confidence 4588899999999999999999999999999999999998 78999999999999999997 89999999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWY 808 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 808 (847)
.+... ..+++|+.|++|++||+++. +|+.++.+|...+.++... ...+.....++.|++||.............
T Consensus 378 ~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-- 452 (537)
T KOG0274|consen 378 IVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGR-- 452 (537)
T ss_pred EecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccccEEEeecccCceeeeeccC--
Confidence 88875 35669999999999999999 9999999999988766643 446667788889999985533322211111
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+...+ +.+ ......+++++.||++++||+.+
T Consensus 453 ~~~~v----~~l---~~~~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 HVGGV----SAL---ALGKEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred CcccE----EEe---ecCcceEEEEecCCeeEEEeccc
Confidence 11111 111 11246799999999999999864
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=201.69 Aligned_cols=277 Identities=17% Similarity=0.179 Sum_probs=210.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|..+..+++.+|+.+++++++.+ .||++.+++.... -.+..|..+++.+++|+ ++.-+|.|+||+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-----ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-----LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-----ecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 455567888999988888888766 7899999985443 23334555667788888 89999999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ .....+......|.-+.|+|-+.+|+.|+.||.|-+|.+.+......+.+|..+++|=+|.|+|++++++..||+
T Consensus 137 tg---~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TG---GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cC---ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 88 344445456778999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEec---------------------------------------------------cCCCCeEEEEEe
Q 003106 704 VRVWDADNPGYSLRTFM---------------------------------------------------GHSASVMSLDFH 732 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~---------------------------------------------------~h~~~V~sl~fs 732 (847)
|++||..+ +..+.++. .+...+.||.|.
T Consensus 214 i~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 214 IIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred EEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999988 33332222 122223333333
Q ss_pred cCCC--eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCC
Q 003106 733 PNKD--DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGS 810 (847)
Q Consensus 733 p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 810 (847)
|... -|+++|+-||+|.|||+...+..+.+. |...|..+.+.+...+++++.+|.|+.||.+.......+ .++.
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~-- 368 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQ-- 368 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCc--
Confidence 3211 267788999999999999887666665 444477777777889999999999999998755433222 2221
Q ss_pred CCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 811 DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 811 ~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+.++...+ +.++++|+|.|++.+||++-
T Consensus 369 ----~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 ----MGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----hheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 1122222233 78999999999999999873
No 57
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.5e-22 Score=213.14 Aligned_cols=243 Identities=23% Similarity=0.309 Sum_probs=195.9
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEe--------------EEe-ecCCCCEEEEEEcCCCCEEEEEeCCC
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEA--------------NSV-RASTSKVICCHFSSDGKLLATGGHDK 660 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 660 (847)
.++++++.++ +++.+++|.-|++.++...+.+ ..- ++|...|.|+++++||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 4455667665 7888999999999988533111 111 37899999999999999999999999
Q ss_pred cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.|.|||.++.+.+..+++|.+.|.+++|-.....|++++.|++|++|++.. ...+.++.||.+.|.+|+....++ .+.
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyGHqd~v~~IdaL~reR-~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYGHQDGVLGIDALSRER-CVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhCCccceeeechhcccc-eEE
Confidence 999999999999999999999999999998888999999999999999997 667889999999999999887755 666
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCC---ccccc
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE---IPAPS 817 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~ 817 (847)
.|+.|+++++|++. .+....|.++...+-|+++.+...+.+|+++|.|.+|+.............+.-... +....
T Consensus 303 VGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~ 381 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF 381 (479)
T ss_pred eccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence 77799999999994 455677888888999999999999999999999999997654444333333321111 22223
Q ss_pred ccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 818 WKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 818 w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|-... ......++++|+.||.||+|.+.
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEec
Confidence 54332 12257899999999999999975
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.6e-21 Score=239.90 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=190.9
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc----ee-eEeEEeecCCCCE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF----SF-KEANSVRASTSKV 641 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~----~~-~~~~~l~~h~~~V 641 (847)
+..++|+............ .....+...|.. -+.+++ +++.|++|++||+.... .. .....+. +...|
T Consensus 458 gl~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQ-GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhcccceEEEEeecc-ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 3456666665544322111 111112333443 244444 78899999999976421 11 1222333 45689
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 642 ICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 642 ~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.+++|++ ++.+|++|+.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.|++|+|||+++ +.++..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEE
Confidence 9999987 578999999999999999999999999999999999999997 788999999999999999998 6777777
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
..+ ..|.++.|++....+|++|+.||.|++||+++++ .+..+.+|...|.++.+.+...+++++.++.|++||.....
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence 654 6799999976545577899999999999999876 56778889889999988877889999999999999965321
Q ss_pred -----ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 799 -----ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 799 -----~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+....+ +...+.. +.+.+ ++.+|++|+.||.|++|+..
T Consensus 694 ~~~~~~~l~~~~g--h~~~i~~----v~~s~-~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 694 SGINETPLHSFMG--HTNVKNF----VGLSV-SDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred cccCCcceEEEcC--CCCCeeE----EEEcC-CCCEEEEEeCCCEEEEEECC
Confidence 11111111 1112222 22223 46899999999999999964
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=5.8e-23 Score=219.12 Aligned_cols=222 Identities=17% Similarity=0.223 Sum_probs=174.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|+||++.. ..++++++.+|..+|.+++|+.+|..|+++|.|+.|++||+++|+++..|. -...++||.|+
T Consensus 232 S~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~ 308 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH 308 (503)
T ss_pred ecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecC
Confidence 467889999999987 347899999999999999999999999999999999999999999998885 33568999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-------
Q 003106 690 PSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------- 761 (847)
Q Consensus 690 p~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~------- 761 (847)
|++ +.|++|+.|+.|+.||+|+ ++.+.++..|-+.|..|.|-++|.+++ +.+.|++|+||+.+.+..+..
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~g~rFi-ssSDdks~riWe~~~~v~ik~i~~~~~h 386 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDEGRRFI-SSSDDKSVRIWENRIPVPIKNIADPEMH 386 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccCCceEe-eeccCccEEEEEcCCCccchhhcchhhc
Confidence 998 7889999999999999999 788999999999999999999998665 889999999999875422211
Q ss_pred -------------------------E--------------eeCCc---eEEEEEecCCCEEEEEcCCCcEEEEcCCcccc
Q 003106 762 -------------------------F--------------KVESF---CCWCVNAMNRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 762 -------------------------~--------------~~~~~---~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
| ++|.. .+.+-+..+...|..|..+|.+.+||....
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-- 464 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-- 464 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--
Confidence 1 11111 111222234567889999999999996532
Q ss_pred eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 800 NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+++.. ..+...+....|. +.....+||++.||.|+||+
T Consensus 465 kl~~~l-kah~~~ci~v~wH----P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 KLVSKL-KAHDQPCIGVDWH----PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhcc-ccCCcceEEEEec----CCCcceeEecccCceeEecC
Confidence 222222 2233444444444 66778899999999999996
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.3e-22 Score=211.69 Aligned_cols=270 Identities=18% Similarity=0.275 Sum_probs=201.2
Q ss_pred CCCcceEEEecCCCe-E-eecC-CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAG-T-LTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~-~-~~~~-~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+.+++|+|..-+ + ++++ ...||+..+......+.+|.... ...-+-.|+ .+...|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v-----~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVV-----YSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccce-----eEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 345678899984332 2 3333 23789999888887766653221 111233344 5777899999996542
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCc
Q 003106 626 FSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKT 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~ 703 (847)
..+..+.+|..+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.|.|.+|+|-.. .++|||+||+
T Consensus 101 ---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 101 ---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred ---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 35667899999999999999 667888999999999999999888778999999999999999755 7799999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
||+||++.....+.++ .|..+|.+|.|-|.|. ++++++ ...|+|||+.+|. .+..+..|...|+|+.+. +..+++
T Consensus 178 vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 9999999855556666 5999999999999987 566776 4589999999664 445555589999999765 457899
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+++-|+.+++|+.. +..+.....+ ...+.++...+ ++..++.|-.||.+.+=
T Consensus 255 S~sLD~~VKVfd~t--~~Kvv~s~~~------~~pvLsiavs~-dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTT--NYKVVHSWKY------PGPVLSIAVSP-DDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ecccccceEEEEcc--ceEEEEeeec------ccceeeEEecC-CCceEEEecccceeeee
Confidence 99999999999943 2222322222 22233333333 67889999999988764
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=1e-21 Score=203.94 Aligned_cols=264 Identities=20% Similarity=0.309 Sum_probs=199.8
Q ss_pred CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEEeccCCc-eeeEeEEe
Q 003106 565 GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGMDVSQGF-SFKEANSV 634 (847)
Q Consensus 565 G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vwd~~~~~-~~~~~~~l 634 (847)
+++++++..+ ++||.+........+ ..+.+ . -+.|...+. +++.|.++++|.++.+. ..+.+...
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~G---ht~~i-k-~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVG---HTGPI-K-SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEec---CCcce-e-eeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh
Confidence 5667765544 899987543221100 11111 1 123333333 68899999999998873 23344445
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCceeEEEccCCCCeEEEEEc
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------------------------TLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------------------------~~~~~~~l~~h~~~I~~v~fs 689 (847)
.||...|-|++..+||.++++|+.|.+|+||+.. ++.++.++.+|...|.+|.|+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 6999999999999999999999999999999932 123566788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc---eEEEEeeCC
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKVES 766 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~---~~~~~~~~~ 766 (847)
+ ...+++++.|.+|++||+.+ +.+..++.+ ...++|++.+|... +|++|+.|..||+||.|++. ....|.+|.
T Consensus 270 d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred C-CCceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 8 67899999999999999999 555666654 35689999999755 78899999999999999863 456788999
Q ss_pred ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+|..+... +...+.+++.|+.+++||.+.....++...++ .+.+.+..|. ++..|++|+.|.+|+|++-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h--~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH--NDKVLSVDWN------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC--CceEEEEecc------CCceEEeccCcceEEEecc
Confidence 999888765 45578899999999999988666555554443 5555666676 5779999999999999975
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
.
T Consensus 418 ~ 418 (423)
T KOG0313|consen 418 S 418 (423)
T ss_pred c
Confidence 3
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=2.8e-21 Score=199.96 Aligned_cols=149 Identities=25% Similarity=0.395 Sum_probs=138.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|....+|++.++ .....+.+|++.|+|+.|+.||.+||||+-+|.|+||++.++.....+......|.-+.|+
T Consensus 81 TGGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred ecCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 8999999999999998 3778889999999999999999999999999999999999999988887777889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|.+..|+.|+.||.|.+|.+.+ ....+.+.||...+++=+|.|+|++++ ++..||+|++||++++..+..+.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEec
Confidence 9999999999999999999998 577889999999999999999999765 99999999999999998887776
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.6e-21 Score=217.85 Aligned_cols=235 Identities=20% Similarity=0.350 Sum_probs=196.0
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEe
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd 621 (847)
..|..++..+.|.|.+-.+++++++ ++|+.+...+...+ .| +.+.|+..+.+.. +++.|-+||||+
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-----~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-----LG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-----cc-ccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 3567788899999999999999988 78999887665432 22 3334444333332 889999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------e
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------------------------S 672 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------------------------~ 672 (847)
..++ +++.++++|+..|.|..|+|...+++++|-|-+|||||+...+ .
T Consensus 122 wqsr---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 122 WQSR---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred ccCC---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 9977 7999999999999999999999999999999999999975210 2
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
...+++|...|+-++|+|.-..|++|++|..|++|.... ....+-++.||...|.++-|||..+ ++++.+.|++||||
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVW 277 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEE
Confidence 345679999999999999999999999999999999864 2345677899999999999999865 67799999999999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
|+....++.+|+......|+++..+...++...-|+-+.+|..
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 9999999999999999999999888888887777777777653
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=8.1e-23 Score=218.04 Aligned_cols=164 Identities=20% Similarity=0.401 Sum_probs=149.7
Q ss_pred eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 629 KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.+|..|+|++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56788999999999999999 899999999999999999985 8999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcC
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLD 785 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~ 785 (847)
||+++ +.++..|. -...++|+.|+|++.++|++|+.|+.|+.||+|+++.+..+..|-..+..+.|.. ...+.+.++
T Consensus 285 wDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred ecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999 88888875 3456899999999988899999999999999999999999999999888887764 456778889
Q ss_pred CCcEEEEcC
Q 003106 786 AGDIQISDS 794 (847)
Q Consensus 786 ~g~i~i~d~ 794 (847)
++.++||+.
T Consensus 363 dks~riWe~ 371 (503)
T KOG0282|consen 363 DKSVRIWEN 371 (503)
T ss_pred CccEEEEEc
Confidence 999999983
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=6.9e-22 Score=194.75 Aligned_cols=221 Identities=16% Similarity=0.195 Sum_probs=171.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~f 688 (847)
++..|-+.++||..+|. ++..+ .|+..|.+|+|+.|.++|+||+.++.+||||+.. ......+.+|.+.|..+.|
T Consensus 76 saaadftakvw~a~tgd---elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGD---ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhcccchhhhhhhhhhh---hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 67788899999999883 44444 4999999999999999999999999999999985 4466788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
....+.|+++++|++||+||.++ +..+.++. ....|+++.++++|+ +| +....+.|++||.++...++.++.....
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~-~~s~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~~lKs~k~P~nV 227 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRT-GTEVQSLE-FNSPVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFGLLKSYKMPCNV 227 (334)
T ss_pred eccCceEEeeccCCceEEEEecc-CcEEEEEe-cCCCCcceeeccCCC-EE-EEecCceeEEeccccccceeeccCcccc
Confidence 99999999999999999999999 77777775 557799999999987 44 5556789999999999988888766543
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-..-.......+.++.++..++.||............++ ...+.+ +.+.+ ++.+.++||.||+||+|...
T Consensus 228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhc----VrFSP-dGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHC----VRFSP-DGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEE----EEECC-CCceeeccCCCceEEEEEec
Confidence 322222344667788888888888855332211111121 222222 33334 78899999999999999864
No 66
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.6e-21 Score=214.13 Aligned_cols=267 Identities=18% Similarity=0.323 Sum_probs=198.9
Q ss_pred cCCCeEeecCCC---eEEeCCCCchhhc---cccc------cccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 563 TDGAGTLTSPSN---QLWDDKDLELRAD---MDRL------VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 563 ~dG~~~~~~~~~---~iWD~~~~~~~~~---~~~~------~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
+.++++++++.+ ++|++....-.+. ..++ +.+..+...-..+. +++.|.+|++|+...+. -.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI----S~SsDtTVK~W~~~~~~-~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI----SASSDTTVKVWNAHKDN-TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE----EecCCceEEEeecccCc-chh
Confidence 567778888877 7899864332111 1111 11111111111111 57789999999998873 457
Q ss_pred eEEeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCC--ceeEE--------Ec-cCCCCeEEEEEcCCCCEEEEE
Q 003106 631 ANSVRASTSKVICCHF-SSDGKLLATGGHDKKAVLWHTDTL--KSKTN--------LE-EHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~f-spdg~~Lasgs~Dg~V~vwd~~~~--~~~~~--------l~-~h~~~I~~v~fsp~~~~Lasg 698 (847)
..+++.|.+.|.|+++ -++..++|+||-|+.|.|||+.++ ..+.. +. ++...|++++.++.|..|++|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 7889999999999999 778899999999999999999976 22222 23 788999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-R 777 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~ 777 (847)
+..+.|++||.++ .+.+..+.||.+.|..|..+.||.++| +++.||+|++||+...+|+.++..|...||++.... -
T Consensus 190 gtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 190 GTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred CcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 9999999999999 667778889999999999999999776 999999999999999999999999999999987653 4
Q ss_pred CEEEEEcCCCcEEEEcCCc-ccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLF-INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+++|..+|.|..-+... .....+|...+... .+..+. .+.-+.++..|+.|+-|...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~--------~l~~~~-~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL--------KLHLHE-HDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeecCCCchh--------hhhhcc-ccCCceeeeccccceecCCc
Confidence 5789999999999888654 23333333222111 111111 12334788889999988753
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=4.8e-20 Score=194.60 Aligned_cols=224 Identities=26% Similarity=0.390 Sum_probs=182.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.++.+++|++.++ +....+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|+
T Consensus 26 ~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 102 (289)
T cd00200 26 TGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102 (289)
T ss_pred EeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEc
Confidence 4556899999999876 3566678899999999999999999999999999999999888888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++++|++++.|+.|++||+++ ...+..+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..+...+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 103 PDGRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred CCCCEEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 9988888888899999999997 677788888999999999999965 66677779999999999999999999888888
Q ss_pred EEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++.+.... .++.+..++.+.+|+...... ..... .+...+....|+ + ++.++++++.||.|++|++.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~----~-~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFS----P-DGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCce--ecchh-hcCCceEEEEEc----C-CCcEEEEEcCCCcEEEEEcCC
Confidence 888877665 778888899999999653211 11110 112223333333 3 367788888899999999864
No 68
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=7.9e-21 Score=202.19 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=186.4
Q ss_pred CCCCCCcEEEEeccCCce-------eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeE
Q 003106 610 TDPRDAGGRGMDVSQGFS-------FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-------~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~ 674 (847)
+....+.|.|||..+... +.+-.++++|...-++|+|++ ..-.|++|+.|++|++||+... .+..
T Consensus 142 t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 142 TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 456678899999887522 233448899999889999999 5568999999999999998732 2345
Q ss_pred EEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 675 NLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
.+.+|.+.|.+|+|++.. ..|+++++|+.+.|||+|+ ..++....++|.+.|+|++|+|.+.++||||+.|++|++||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 678999999999999965 4678999999999999995 25666777899999999999999999999999999999999
Q ss_pred CCCC-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCccccee-------------eecccccCCCCcccc
Q 003106 753 INNG-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANI-------------FCGLGWYGSDEIPAP 816 (847)
Q Consensus 753 ~~~~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~-------------~~~~~~~~~~~~~~~ 816 (847)
+|+- .+++++.+|...|.++.+. ...++.+...++.+.+||...+.... |...|+ +..
T Consensus 302 lRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH------~~k 375 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH------TAK 375 (422)
T ss_pred chhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc------ccc
Confidence 9984 5889999999999999765 56678888899999999965444332 222222 333
Q ss_pred ccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 817 SWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 817 ~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+-++.+.++..-+|++.+.|+.+-||+..
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 44555668888899999999999999863
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.7e-21 Score=205.87 Aligned_cols=223 Identities=19% Similarity=0.251 Sum_probs=176.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
....+.+|+..+. ....++......|++++|..||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|.+
T Consensus 46 ~S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 46 SSVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred cccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 3445677877654 3444455567889999999999999999999999999988878889999999999999999976
Q ss_pred C-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEE
Q 003106 693 P-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCW 770 (847)
Q Consensus 693 ~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~ 770 (847)
+ .|++|++|+.+++||+.+ ......+.+|++.|.|.+|+|-.+.+++||+.||+||+||++.. ..+.++. |...|.
T Consensus 123 ~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe 200 (487)
T KOG0310|consen 123 NTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE 200 (487)
T ss_pred CeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee
Confidence 5 678899999999999998 55567889999999999999999999999999999999999987 5555664 555667
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
.+.+.+...+...+.+..+++||.......+..... +...+++..+. . ++.+|++|+-||.|+||++.+|
T Consensus 201 ~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~----s-~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLA----S-DSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred eEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc--ccceEEEEEee----c-CCceEeecccccceEEEEccce
Confidence 777777766667778889999996633322222221 33444443332 2 5688999999999999998776
No 70
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=4.8e-21 Score=204.13 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=207.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
..|+..+..+.+|...+++++++.. +|||+....-..-+.. +.+-.-+..++ |.+.+|+ .++...++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4566777889999999999998866 9999976532221111 12222233333 3355555 6778889999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
... +.+....+....-.+.+++.+||.++.++|+.||.|+|||+.+...++.|.+|.+.+.||++++||..|.||+.|+
T Consensus 495 Aap-TprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAP-TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCC-CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 876 5555555665566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE-
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW- 781 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~- 781 (847)
+||.||+++ +..+... ...+.|.++.++|.++++ +.|-.++.|.|..... .....+.-|..+|.++.|......|
T Consensus 574 tvRcWDlre-grqlqqh-dF~SQIfSLg~cP~~dWl-avGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLRE-GRQLQQH-DFSSQIFSLGYCPTGDWL-AVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhh-hhhhhhh-hhhhhheecccCCCccce-eeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceee
Confidence 999999998 4333332 245789999999999855 5888888888887764 3456777889999999887655544
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+...|..+..|..-+....+.... ...+.+ .+ ...+..+|+||++|....||.+-|
T Consensus 650 StGkDnlLnawrtPyGasiFqskE----~SsVls--CD---IS~ddkyIVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKE----SSSVLS--CD---ISFDDKYIVTGSGDKKATVYEVIY 705 (705)
T ss_pred ecCchhhhhhccCccccceeeccc----cCccee--ee---eccCceEEEecCCCcceEEEEEeC
Confidence 445556677777554322221111 111111 11 234688999999999999999865
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7e-21 Score=212.80 Aligned_cols=225 Identities=17% Similarity=0.264 Sum_probs=177.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++...|.|.+||+.....-+.+..|.+|+..|++++|++ ...+|++||.||+|++||++..+.+.++.+....|.+|.|
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 788899999999987433456668899999999999999 5578999999999999999999999999998999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-
Q 003106 689 SPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES- 766 (847)
Q Consensus 689 sp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~- 766 (847)
+|. +..|+++.+.|.|.+||+|.+..+...+..|.+.|.|+.|+|++. +||||+.|+.|+|||+.+.+.......+.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTi 263 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTI 263 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeec
Confidence 996 678999999999999999998899999999999999999999755 78899999999999999766444444333
Q ss_pred ceEEEEEecCCC--EEE--EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 767 FCCWCVNAMNRP--CLW--DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 767 ~~v~~~~~~~~~--~l~--~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
..|.++.+.+.. .+. +...+-.|.|||.......+. .-..+...++...|. ..+..++++++.||+|..
T Consensus 264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~--t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA--TFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ceeeeeeeccCccchhhhhhccccceEEEEeeccccccce--eeeccCccccceecc----CCCceeeEeecCccHHHH
Confidence 345666654332 222 233556799999653322221 112345566677777 345788999999998753
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5e-21 Score=217.33 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=159.9
Q ss_pred Eee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------------------------------
Q 003106 633 SVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------------------------------ 669 (847)
Q Consensus 633 ~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------------------------------ 669 (847)
.+. +|.+.|+||.|++||+|||+||.|+.|+||.+..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 8999999999999999999999999999997643
Q ss_pred ------------------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEE
Q 003106 670 ------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (847)
Q Consensus 670 ------------------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~f 731 (847)
.++++.|.+|.+.|.+|.|+.++ +|++++.|+|||||++.. ..|+.+|. |.+.|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEEe
Confidence 01233367899999999999765 899999999999999997 88999995 9999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCC
Q 003106 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGS 810 (847)
Q Consensus 732 sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 810 (847)
+|..+++|++|+.||.||||++...+.+.-...+ ..|+++++.+ +.....|+-+|.+++|+........-........
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9998899999999999999999987766555544 6677776654 4456688889999999865433222111111111
Q ss_pred CCc-cccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 811 DEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 811 ~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
... ..++-.+.+.+.+...|++.+.|..|||||.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 111 1123345555555667888999999999997
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-20 Score=207.32 Aligned_cols=269 Identities=19% Similarity=0.244 Sum_probs=202.2
Q ss_pred ceEEEecCCCeEeecC-CCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccCCceeeE
Q 003106 557 PLMMFGTDGAGTLTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~-~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+.|+..+...++.+ ...+|+..++.+.... ..+ ...|+.. +..++ .+..+|.|.|||.... +.
T Consensus 181 nlldWss~n~laValg~~vylW~~~s~~v~~l~----~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~ 251 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELC----SFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KK 251 (484)
T ss_pred hHhhcccCCeEEEEecceEEEEecCCCceEEeE----ecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cc
Confidence 5677886666555555 4589999998754322 111 3334433 44444 6888999999999855 67
Q ss_pred eEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 631 ANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 631 ~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
+.++.+ |...|-|++|. +..|.+|+.|+.|.++|++..+.... +.+|...|..+.|++|+.+||+|+.|+.|.|||
T Consensus 252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 777888 99999999998 67899999999999999997665544 889999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEE--EEE
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCL--WDK 783 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l--~~~ 783 (847)
... ...+..+..|.+.|..++|+|....+||+|+ .|+.|++||+.+++++..+..... |..+.+. ....+ -.|
T Consensus 330 ~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ-VcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 330 GLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ-VCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc-eeeEEEcCCCCEEEEecC
Confidence 976 6778888999999999999999888999886 589999999999999888876555 4444443 33233 345
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....|.+|....... +....+ + ..++..+.+.+ ++..|++|+.|.++++|++-.
T Consensus 408 ~s~n~i~lw~~ps~~~-~~~l~g--H----~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKL-VAELLG--H----TSRVLYLALSP-DGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccccce-eeeecC--C----cceeEEEEECC-CCCEEEEecccCcEEeccccC
Confidence 5667789998543111 111111 1 22233333344 689999999999999999754
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.3e-20 Score=200.65 Aligned_cols=186 Identities=21% Similarity=0.270 Sum_probs=159.4
Q ss_pred CCCCCCcEEEEeccCCce----eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFS----FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~ 682 (847)
+++.|++|++||+..... ......+.+|.+.|.+++|++ +..+|+++++|+.+.|||++ +.++....++|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 788999999999987533 556778899999999999999 67789999999999999999 56777788899999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-----
Q 003106 683 ITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----- 756 (847)
Q Consensus 683 I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----- 756 (847)
|+||+|+|-+. .|||||.|++|++||+|+...++.++.+|...|.+|.|+|..+.+|++++.|+.+.|||+..-
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999655 679999999999999999888999999999999999999999999999999999999999641
Q ss_pred ---------ceEEEEeeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCC
Q 003106 757 ---------SCTRVFKVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 757 ---------~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~ 795 (847)
+.+....+|...|..+.+... =.+.+..+++.+.||...
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 233555677777777765532 356788889999999843
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3e-20 Score=189.06 Aligned_cols=222 Identities=15% Similarity=0.195 Sum_probs=172.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|.+|+|||+.+. +.+..+-.|.+.|+||.|.++-. .|++|++||.|.+|++....++.++++|.+.|+.|+
T Consensus 58 SGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 58 SGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeE
Confidence 7899999999999976 67778888999999999998665 899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
++|.+++.++.+.|+.+|+||+-+ ++.-..+ ..+. .+.|.|+|.|+++++.+. ..|-||.+.+-+....+...
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~--~~i~i~q~d~A~v~~~i~~~- 208 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVR-GRVAFVLNLKNK--ATLVSWSPQGDHFVVSGR--NKIDIYQLDNASVFREIENP- 208 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhc-CccceeeccCCc--ceeeEEcCCCCEEEEEec--cEEEEEecccHhHhhhhhcc-
Confidence 999999999999999999999987 3332222 2233 344999999997664443 57999999877655544433
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.|+.+.....+..+.+++.|.+||.... ...+.+..+.........+. .....+|+|++.||.|+|||+..
T Consensus 209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 209 KRILCATFLDGSELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccceeeeecCCceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccc
Confidence 5577888889999999999999999997642 12222221111111111111 22457999999999999999853
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-18 Score=177.82 Aligned_cols=273 Identities=14% Similarity=0.157 Sum_probs=200.5
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~ 624 (847)
...+.++.|+++|..++++..+ +|||..+++....+.... +...+.+|..++. +...|.+||..++.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 4567899999999999885544 899999998877544322 2222334433333 345689999999997
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
. +.++.+.||...|++|+.+|-+..+++++.|++|++||++..++...+..-.. -.++|+|.|-++|++...+.|
T Consensus 90 N---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 90 N---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred C---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence 7 78999999999999999999889999999999999999998887776654333 357899999999999888899
Q ss_pred EEEECCCC-CceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce----EEEEEecC
Q 003106 705 RVWDADNP-GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC----CWCVNAMN 776 (847)
Q Consensus 705 ~iWD~~~~-~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~----v~~~~~~~ 776 (847)
+|||+|.- +.+..+|. +-....+.|.|+|+|+.+|+ ++..+.+++.|.-+|..+.++..+... +.+....+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 99999964 33444443 34677899999999998874 455789999999999988888876433 24444456
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++.+.++|.|.+|+....+...... + .......+..| +.++..-.+.|..+.+|..
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~-~-~~~~~~~~~~f-------nP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLR-G-PNGGPVSCVRF-------NPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEec-C-CCCCCcccccc-------CCceeeeeecCceEEEEec
Confidence 6788899999999999975433222211 1 11222222223 3455555666778888864
No 77
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=3e-19 Score=205.04 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=140.2
Q ss_pred CCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEE
Q 003106 612 PRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v 686 (847)
+.|++|++||+.++. ....+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||+++++.+..+.+|...|++|
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 344555555554321 113566788999999999999975 699999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCc-eEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHPNKDDLICSC---DGDGEIRYWSINNGS-CTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~-V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~~~-~~~~ 761 (847)
+|+|++.+|++++.|++|+|||+++ +..+..+.+|.+. +..+.|.+++..++.+| +.|+.|++||+++.. ++..
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9999999999999999999999998 6778888888765 45788999877666444 247999999999754 4444
Q ss_pred EeeCCc-eEEEEEec-CCCEEEEEc-CCCcEEEEcCCc
Q 003106 762 FKVESF-CCWCVNAM-NRPCLWDKL-DAGDIQISDSLF 796 (847)
Q Consensus 762 ~~~~~~-~v~~~~~~-~~~~l~~~~-~~g~i~i~d~~~ 796 (847)
+..+.. .+....++ +...++.+. .++.|++|+...
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 433332 33333333 344555554 699999999664
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-20 Score=183.81 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=184.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~ 685 (847)
+++.|++|+|+.++.....+.+.++++|.++|.-++|.. -|.+||+|+.||+|.||.-+.++ ....+..|...|++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNS 107 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccccee
Confidence 788899999999998766688999999999999999987 89999999999999999988763 34456689999999
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCC-Cc-eEEEeccCCCCeEEEEEecC---C----------CeEEEEEeCCCcE
Q 003106 686 VRFSPS--MPRLATSSFDKTVRVWDADNP-GY-SLRTFMGHSASVMSLDFHPN---K----------DDLICSCDGDGEI 748 (847)
Q Consensus 686 v~fsp~--~~~Lasgs~Dg~V~iWD~~~~-~~-~~~~~~~h~~~V~sl~fsp~---g----------~~ll~s~s~Dg~V 748 (847)
|+|.|. |-.|++++.||.|.|.+++.. +. ..+....|.-.|++++|.|- | -+-|++|+.|..|
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V 187 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV 187 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce
Confidence 999997 557899999999999999875 22 23445789999999999986 3 1246799999999
Q ss_pred EEEECCCCc--eEEEEeeCCceEEEEEec-----CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccc
Q 003106 749 RYWSINNGS--CTRVFKVESFCCWCVNAM-----NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVS 821 (847)
Q Consensus 749 ~iWD~~~~~--~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 821 (847)
+||+..++. ...+|..|...|+.++.. ....+.+++.+|.+.||.... ......... .......+|++.
T Consensus 188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e~e~wk~tl---l~~f~~~~w~vS 263 (299)
T KOG1332|consen 188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-EYEPWKKTL---LEEFPDVVWRVS 263 (299)
T ss_pred eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-ccCcccccc---cccCCcceEEEE
Confidence 999998864 335688999999888754 445789999999999998652 222221111 122455677777
Q ss_pred cccCCCcEEEEEeCCCeEEEEEcc
Q 003106 822 CRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.. .+++|+++++|..|.+|+..
T Consensus 264 WS~-sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSL-SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Eec-cccEEEEecCCcEEEEEEeC
Confidence 666 48899999999999999863
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-20 Score=187.25 Aligned_cols=212 Identities=21% Similarity=0.281 Sum_probs=169.2
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.++..+++|.+.|.|+.|-..|+.++++++|.+..+||+++++++..+.+|....+.++-+|.-+++++++.|.+.|+||
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEEEEcCC
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLWDKLDA 786 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~ 786 (847)
++..-..+..|.||.+.|+++.|.-+.+ +++|+.|.+|+|||+++.+ .+.+++..+. +..+... +...|....++
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~-~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSP-ANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCc-cceeEeecCCceEEeccCC
Confidence 9976677899999999999999998744 5699999999999999865 5566655443 3334433 44466777788
Q ss_pred CcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 787 GDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..|++||..........+.. -.+...+++..|.-...- +-|++++.|..|.-|++.+
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~---cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA---CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcc---cccccccccceeeeeEecc
Confidence 88999996543332222221 123445667777633222 4488999999999999854
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.6e-20 Score=193.04 Aligned_cols=232 Identities=18% Similarity=0.190 Sum_probs=178.3
Q ss_pred eecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cC
Q 003106 605 LSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH 679 (847)
Q Consensus 605 ~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h 679 (847)
++++| +++.|.++.+|++.....++...++.+|..+|.-+.|+||.++|++|+.|..+++||+.+|...+.+. +|
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~ 311 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL 311 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc
Confidence 55666 78889999999988876789999999999999999999999999999999999999999999988875 34
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
...+.|++|.|||..+++|+.|++|..||++. ..+..+.+.. ..|.+++..+||++++ +.+.|..|++++.++..+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVD 388 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhh
Confidence 67899999999999999999999999999984 4555565543 5699999999999777 555799999999998776
Q ss_pred EEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 759 TRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
+..+..+. .+.++....+ ..+.....+..+.+||.. .+..+....|+.-+..+...++ ...+..++++||.|+
T Consensus 389 r~lise~~-~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCF----gg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 389 RGLISEEQ-PITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCF----GGGNDKFIASGSEDS 462 (519)
T ss_pred hccccccC-ceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEecc----CCCCcceEEecCCCc
Confidence 65554443 3444444433 344456677889999965 2322233333332222221111 233568999999999
Q ss_pred eEEEEEcc
Q 003106 838 SLSSFIAG 845 (847)
Q Consensus 838 ~V~vW~~g 845 (847)
.|+||+..
T Consensus 463 kvyIWhr~ 470 (519)
T KOG0293|consen 463 KVYIWHRI 470 (519)
T ss_pred eEEEEEcc
Confidence 99999864
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.1e-20 Score=207.56 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=189.4
Q ss_pred CCCCCCcEEEEeccCCce---eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFS---FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~ 684 (847)
++++||.|++|++..... -..+..+..|.+.|++++...+++.|+++|.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 689999999999876533 2246788999999999999999999999999999999999876 67888999999999
Q ss_pred EEEE-cCCCCEEEEEeCCCcEEEEECCCCCc-e--------EEEec-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 685 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY-S--------LRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 685 ~v~f-sp~~~~Lasgs~Dg~V~iWD~~~~~~-~--------~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
||++ .++...+|+|+.|+.|.|||+.++.. . ...+. |+...|++++.++.|. +|++|+.++.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecc
Confidence 9999 77888999999999999999997311 1 22233 7899999999999984 7889999999999999
Q ss_pred CCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE
Q 003106 754 NNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832 (847)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s 832 (847)
++++.+..+.+|...|.++... ++..+.++++||.|++|+...-++..... .....+|.+.+.+ +-..|++
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-------vH~e~VWaL~~~~-sf~~vYs 272 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-------VHKEGVWALQSSP-SFTHVYS 272 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-------eccCceEEEeeCC-CcceEEe
Confidence 9999999999999999988755 55689999999999999966433322211 1122378877765 5678999
Q ss_pred EeCCCeEEEEEccCC
Q 003106 833 GCGDSSLSSFIAGTY 847 (847)
Q Consensus 833 Gs~DG~V~vW~~gty 847 (847)
|+.||.|..-++.+|
T Consensus 273 G~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNP 287 (735)
T ss_pred cCCCCcEEecccCCc
Confidence 999999998887664
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=198.12 Aligned_cols=283 Identities=13% Similarity=0.229 Sum_probs=181.3
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhc-cccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRAD-MDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~-~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
|+..++.+++.|.|..+++++.+ ++||...+..... +..+..+..+..+...|....+ ......-++|+|-..
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 34456788999999999998866 8999987654322 2223333333333333322111 122233445555433
Q ss_pred Cce---------eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eeEEEc-----cCCCCeEEEEE
Q 003106 625 GFS---------FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLK-SKTNLE-----EHSSLITDVRF 688 (847)
Q Consensus 625 ~~~---------~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~-~~~~l~-----~h~~~I~~v~f 688 (847)
... +..+...++|...++|.+|+|+. ..|+||+.||++||||++..+ .+..|+ +..-.++.++|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 211 12233457999999999999955 579999999999999998543 233332 23346899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCc--eEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEe
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
++++++||+|+.||.|.+||...... ....-..|.. .|+||.|+++|..| ++-+.|+++++||++.. +++.++.
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchhhhc
Confidence 99999999999999999999865221 2333456776 89999999999855 59999999999999985 4666555
Q ss_pred eCC---ceEEEEEecCCCEEEEEc------CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 764 VES---FCCWCVNAMNRPCLWDKL------DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 764 ~~~---~~v~~~~~~~~~~l~~~~------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+-. ....|++......|++|. ..|.+.+||......+....+. ...+....|+. .-+-|++|+
T Consensus 405 gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~Whp-----kLNQi~~gs 476 (641)
T KOG0772|consen 405 GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---TASVVRCLWHP-----KLNQIFAGS 476 (641)
T ss_pred CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---CceEEEEeecc-----hhhheeeec
Confidence 432 122333333334444443 3456777775543332222211 23334445663 345589999
Q ss_pred CCCeEEEEE
Q 003106 835 GDSSLSSFI 843 (847)
Q Consensus 835 ~DG~V~vW~ 843 (847)
+||+++||-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999984
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.84 E-value=2.4e-20 Score=188.76 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=163.9
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CceeEEEccCCCCeEEEEEcCC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+...+..|+..+++.+|++||.++|||+.|..|+|+|++. --++++|..|.+.|++++|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4556788999999999999999999999999999999861 1357888899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe---eCC
Q 003106 692 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---VES 766 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---~~~ 766 (847)
...|++|+.|++|++||+.... +..+.| .....|.+|.|+|.|++++ .|..-.++++||+++..|...-. .|.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999997621 112222 2346799999999999555 77778899999999998876654 467
Q ss_pred ceEEEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..|.++.+..... +.+++.+|.|++||.....+ +..++ .+++..+.+..+. .++.+|++.+.|.+|++|++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeee
Confidence 7889998876554 45788999999999653222 22222 2344455554444 37899999999999999999
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
+|
T Consensus 335 ~t 336 (430)
T KOG0640|consen 335 ST 336 (430)
T ss_pred cC
Confidence 76
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=3.9e-19 Score=206.66 Aligned_cols=286 Identities=16% Similarity=0.186 Sum_probs=218.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC-----eEEeCCCCch----hhc-ccc-ccccCCCCCceEEe-eecCC----CCCCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN-----QLWDDKDLEL----RAD-MDR-LVEDGSLDDNVESF-LSHDD----TDPRD 614 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~-----~iWD~~~~~~----~~~-~~~-~~~~g~~d~~v~~~-~s~d~----t~~~d 614 (847)
.....+.++..+|||..+++++.. +||+.+.... ... +.. +.....++..|.|+ ++.|+ +|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 344457799999999999998833 5998754321 111 122 22234566677665 77777 78888
Q ss_pred CcEEEEeccC---------------CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC
Q 003106 615 AGGRGMDVSQ---------------GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 615 ~~v~vwd~~~---------------~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h 679 (847)
..|-+|+... -+.|+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+++.+.++++|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 8999999872 0357788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC------CCCeEEEEEecCCCeEEEEEeC---CCcEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG---DGEIRY 750 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------~~~V~sl~fsp~g~~ll~s~s~---Dg~V~i 750 (847)
.+.|..|.|.|-|++||+-++|++|+||++.+ ..+.+.+.++ ...+..+.|+|||.+|....+- -.++.|
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 99999999999999999999999999999876 4444444433 3457889999999966533332 347889
Q ss_pred EECCCCceEEEEeeCCceEEEEEecC------C------------CEEEEEcCCCcEEEEcCCcccceeeecccccCCCC
Q 003106 751 WSINNGSCTRVFKVESFCCWCVNAMN------R------------PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE 812 (847)
Q Consensus 751 WD~~~~~~~~~~~~~~~~v~~~~~~~------~------------~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 812 (847)
.+-.+.++-..|-+|...+.|+.|.+ . .++..++.|+.|.||....... ++..... ....
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-l~vi~~l-f~~S 327 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-LFVIHNL-FNKS 327 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-hhhhhhh-hcCc
Confidence 99988898999999999999988642 1 1677899999999999643322 2222221 2333
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+....|+ + ++..|+++|.||+|.+.+.
T Consensus 328 I~DmsWs----p-dG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 328 IVDMSWS----P-DGFSLFACSLDGTVALIHF 354 (942)
T ss_pred eeeeeEc----C-CCCeEEEEecCCeEEEEEc
Confidence 4455666 3 6788999999999999875
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=196.73 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=185.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..|++|++..+ ....+.++.+..+.|++++|.++++.+++++.|+.+++|+++......+|.+|++.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 7888999999999877 466788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.....+++|+.|.+|++||+.. ..|.+++. ..+.+..|+..+ ..+++|-.|++||+||+++..++.....+. .|
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~v 344 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RV 344 (459)
T ss_pred ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc-ce
Confidence 8877799999999999999998 77777664 234566666652 256699999999999999999999998877 56
Q ss_pred EEEEe-cCCCEEEEEcCCCcEEEEcCCccccee-eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNA-MNRPCLWDKLDAGDIQISDSLFINANI-FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++.. .+...+.+...+..+.++|........ +...+ ......|.-.+.++++.|+++||.||.|+||++-+
T Consensus 345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g-----~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG-----FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc-----cccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 66654 356677777888899999976443322 22222 33344476666677899999999999999999854
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=5e-20 Score=203.93 Aligned_cols=218 Identities=17% Similarity=0.274 Sum_probs=182.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++++|+++++|+-... .+.....+.+|.+-|.+ ++|-+ ++-+|++|+.|++|.+|......++.+|++|...|.|+.
T Consensus 30 s~sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 6889999999998665 56666778889998888 88886 556799999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
...++. |++||+|.+++||-+. .+...+.+|...|+++.+-|++ .++||+.|.+|++|.- ++++++|.+|..
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 888886 9999999999999875 4666799999999999999987 4569999999999976 789999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|+.+...+...+.+++.+|.|+.|+.. ...+....++ +..+|++.. ..+...|++++.|++++||+.+
T Consensus 181 ~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~gh------tn~vYsis~-~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGH------TNFVYSISM-ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred heeeeEEecCCCeEeecCCceEEEEecc--Cceeeeeecc------ceEEEEEEe-cCCCCeEEEecCCceEEEeecC
Confidence 9999999999999999999999999963 2222222222 222333432 2257889999999999999875
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=4e-19 Score=180.03 Aligned_cols=226 Identities=18% Similarity=0.233 Sum_probs=159.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++.|++||+|++.....+.. +....|.++|.|++|+.||..+++|+.|+.+++||+.+++. ..+-.|.++|.++.|-+
T Consensus 46 ~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVP 123 (347)
T ss_pred cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEec
Confidence 34577888888887422222 55678999999999999999999999999999999999855 56778999999999988
Q ss_pred CCC--EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEee-CC
Q 003106 691 SMP--RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKV-ES 766 (847)
Q Consensus 691 ~~~--~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~~-~~ 766 (847)
... .|+|||+|++||+||.|. ...+.++. -.+.|++++.-.. +++.+..|+.|.+|+++++.... .... -.
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~-LPeRvYa~Dv~~p---m~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQ-LPERVYAADVLYP---MAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred CCCcceeEecccccceeecccCC-CCeeeeee-ccceeeehhccCc---eeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 766 799999999999999998 55666654 3467888876543 66677779999999998764221 2221 22
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCcc----cceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFI----NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
..++|++.. +......++-+|.+.+...... +-.+.|+............+-++.+++ ....|+|+++||++.+
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSF 277 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEE
Confidence 335555433 3334467777888777654432 122223322111222112234455666 5788999999999999
Q ss_pred EEc
Q 003106 842 FIA 844 (847)
Q Consensus 842 W~~ 844 (847)
||.
T Consensus 278 WDk 280 (347)
T KOG0647|consen 278 WDK 280 (347)
T ss_pred ecc
Confidence 985
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.2e-19 Score=202.16 Aligned_cols=230 Identities=25% Similarity=0.349 Sum_probs=190.0
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCce-
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGFS- 627 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~~- 627 (847)
....|-|-+++++.+..+ .++|+......+.+.. +++.+-. -..+|+ +++.|.+|++||..--..
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 455677888888776544 7899998887776441 3333322 244444 889999999999653211
Q ss_pred ---e------eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 628 ---F------KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 628 ---~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
- +...++ .-.+.|.|+.+||||++||++--|.+|+||-+++.+....+.||.-+|.|++++||++.|+||
T Consensus 490 ~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred CcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec
Confidence 1 111122 245789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-R 777 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~ 777 (847)
|.|+.|+||-++- +.|.+.+.+|.+.|++|.|.|. ..+|.+|+.|+.|+-||-...+++..+.+|...|+|++... +
T Consensus 569 SADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 569 SADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG 646 (888)
T ss_pred cCCCceEEecccc-chhhhhhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC
Confidence 9999999999997 8899999999999999999997 45677999999999999999999999999999999998664 4
Q ss_pred CEEEEEcCCCcEEEEcCC
Q 003106 778 PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~ 795 (847)
..+++++.|..|++|+..
T Consensus 647 ~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERT 664 (888)
T ss_pred CeEEeccCCceeEeeecc
Confidence 588888899999999854
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=183.13 Aligned_cols=224 Identities=16% Similarity=0.164 Sum_probs=167.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~ 687 (847)
++..|..|++|.+... .+...+..|..+|+.+..+|.|+||++++.||+..+.|+.++..+...... .-.+++.+
T Consensus 278 ~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 278 TASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ecCCcceEEeeccccc---cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 6778889999998765 366677899999999999999999999999999999999999987766532 23489999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+|||..|.+|..|+.|+|||+.. ...+..|.+|.+.|..|.|+.+| ++|++++.|+.|++||+|.-+...+|.....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 999999999999999999999998 55789999999999999999886 5777999999999999999888887775543
Q ss_pred -eEEEEEecCCCEEE-EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 -CCWCVNAMNRPCLW-DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 -~v~~~~~~~~~~l~-~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+.++.++....+. .+..+-.|++++.....-.....+.. +....+. +.+.. ...++++++.|..++++.+
T Consensus 433 ~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-~sg~st~----v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-HSGLSTG----VRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-cccccce----eeecc-cceEEeeccchhheEEeec
Confidence 57777777655443 33333334444422211111111111 1111111 11122 4578999999999998864
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-18 Score=171.62 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=199.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~ 622 (847)
.|..+.+-+.+..+|..+.+.+.+ .+|-..+++....++ ++.+.|-+. ...+. +++.|.++++||+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~------GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD------GHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec------CCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 356677889999999999887766 688887776554432 233333222 11121 8899999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECC-------CCceeEEEccCCCCeEEEEEcC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~-------~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++| +.+.+++ -...|..+.|+.+|++++.+.++ +.|.++|++ ..++...+..+.+.|+.+-|.|
T Consensus 82 ~tG---k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 82 ETG---KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred CCC---cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 998 5666655 46789999999999998887653 679999987 4566788888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
.++.|++|..||.|.+||++++...+.....|...|+.|.|+++.. ++++++.|.+-++||+++-++++++..... |.
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~P-vN 235 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERP-VN 235 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeeccc-cc
Confidence 9999999999999999999996666777788999999999999977 556999999999999999999999986544 44
Q ss_pred EEEecC--CCEEEEEcCC-CcEEE-------EcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 771 CVNAMN--RPCLWDKLDA-GDIQI-------SDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 771 ~~~~~~--~~~l~~~~~~-g~i~i-------~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+.+..+ +..+..+..+ ..|.. |+.++.+......++...+.+ ..+-.++++| ++...++|+.||.||
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--GPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--GPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc--cCcceeEECC-CCcccccCCCCceEE
Confidence 444332 2222222211 11221 223332222222222222211 1223455556 788899999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+...
T Consensus 313 ~h~F 316 (327)
T KOG0643|consen 313 LHHF 316 (327)
T ss_pred EEEe
Confidence 8754
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=184.02 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------CC--------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT------DT-------------- 669 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~------~~-------------- 669 (847)
+++.|.+.++|.++++ +++.++.+|.+.|+||+|++.+.++++++.|++..||.. ..
T Consensus 165 tASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 165 TASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5677899999999987 799999999999999999999999999999999999951 00
Q ss_pred --------------------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 670 --------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 670 --------------------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++..|++|...|.+..|-..|..++++++|.+..+||+++ +..+..+.||....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt-ge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET-GEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc-CceeccccCcchhcccc
Confidence 013455789999999999999999999999999999999999 89999999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWY 808 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 808 (847)
+-+|..+ |+++.+.|.+.++||++.. ..+.+|.+|...|.++.|..+..+.+++++..|++||.......+-....-.
T Consensus 321 stHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 321 STHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred ccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC
Confidence 9999954 8889999999999999954 4678999999999999999999999999999999999765443322111100
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
. +-.++. .....+|+.--.+..|++||+.
T Consensus 400 ~-------~NRvav-s~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 400 P-------ANRVAV-SKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred c-------cceeEe-ecCCceEEeccCCceEEEEecC
Confidence 0 001111 1134467777777889999873
No 92
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=6.7e-21 Score=211.37 Aligned_cols=181 Identities=20% Similarity=0.279 Sum_probs=161.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..+-+|.+.+. ..+..+++|..+|.||.|+.+..+|++|+.||+|+|||++..+.++++.+|...|.+|.|+
T Consensus 45 ~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 45 TGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH 121 (825)
T ss_pred cCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec
Confidence 5667777778887754 4555689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|-+.++++|+.|+.+++||++. ..|...+.+|...|.++.|+|+|. ++++++.|.+|+|||+..|+.+..|+.|...+
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV 199 (825)
T ss_pred cceEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccc
Confidence 9999999999999999999997 678899999999999999999988 56699999999999999999999999999988
Q ss_pred EEEEecCCCE-EEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNRPC-LWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~~~-l~~~~~~g~i~i~d~~ 795 (847)
..+.+.+... +..++.++.+.+||..
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccc
Confidence 8888765444 4567888889999865
No 93
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=2.5e-18 Score=198.54 Aligned_cols=184 Identities=10% Similarity=0.150 Sum_probs=143.5
Q ss_pred CCCCCCcEEEEeccCCce-----eeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 610 TDPRDAGGRGMDVSQGFS-----FKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
+++.|++|++||+.++.. ...+..+.+|...|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|
T Consensus 92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V 170 (568)
T PTZ00420 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKL 170 (568)
T ss_pred EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcE
Confidence 788999999999976421 1244568899999999999998875 5789999999999999998877775 66789
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE-----EEecCCCeEEEEEeCC----CcEEEEECC
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL-----DFHPNKDDLICSCDGD----GEIRYWSIN 754 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl-----~fsp~g~~ll~s~s~D----g~V~iWD~~ 754 (847)
.+++|+++|.+|++++.|++|+|||+++ +..+.++.+|.+.+.+. .|++++.+++ +++.| +.|+|||++
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECC
Confidence 9999999999999999999999999998 77888899998765433 3457777555 65555 379999999
Q ss_pred C-CceEEEEeeCC--ceEE-EEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 755 N-GSCTRVFKVES--FCCW-CVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 755 ~-~~~~~~~~~~~--~~v~-~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+ ++++..+..+. ..+. .........+.++..++.|++|+...
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 5 56666654433 2222 22333456677889999999999653
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=189.90 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+......+.|.++...+++++.+ ++|++...+.. ....+. |+......+-+.++. ..+.|+.+++|++.
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLa--Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLA--GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-hhhhhh--ccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 344556788999997778888777 67999776521 111111 111111111222222 67889999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. ....++.+|++.|+++.|.-+...+++|+.|.+|++||+.+..+.+++. ....+.+|+.+ ...+++|..|++
T Consensus 250 ~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 250 SL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccc
Confidence 55 7888999999999999999877779999999999999999988877764 23345566555 456888999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----ceEEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----FCCWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----~~v~~~~~~~~~ 778 (847)
||+||++. ..++.....+. .|++|..++++..++ +++.|.++.+.|+++.+....|.... .+...+...+..
T Consensus 324 vRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 324 VRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eEEEeccC-CceeeEeecCc-ceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 99999998 67777777665 899999999998777 77999999999999999888887543 333444455677
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCC-CccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSD-EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++.+|+.+|.|+||+............ .+.. .+++..|+. .+..+++++.++.+++|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~-----sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNP-----SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcC-----CCchhhcccCCcceEecC
Confidence 889999999999999765443333222 2222 567777873 467799999999999994
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.3e-19 Score=187.42 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=168.2
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.+.+|.+.+...+. ..---.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 67788887642222 122245789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCC--------CCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 696 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~--------~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+||+.||.|++|++.+ .-..++.|..|.-.|+.+...+.|. -.|+|++.|.+|++||+..|..+.++....
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998743 1346788899999999998876532 256699999999999999999888776555
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCccc---------------ceeeecccccCCCCccccccccccccCCCcEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFIN---------------ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
. +.++..+ .+..+|.|.++|.|.+.+..... ..+....++.+...+++... ..++.+|
T Consensus 219 s-i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-----s~DgtlL 292 (476)
T KOG0646|consen 219 S-IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-----STDGTLL 292 (476)
T ss_pred c-ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-----ecCccEE
Confidence 4 4444444 56688999999999887632211 11111112222222332222 2378999
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||.|+|||+..
T Consensus 293 lSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYS 308 (476)
T ss_pred EeeCCCCCEEEEecch
Confidence 9999999999999853
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=7.6e-19 Score=193.90 Aligned_cols=274 Identities=19% Similarity=0.166 Sum_probs=195.1
Q ss_pred eEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEee-------ec-----------CCCCCCCCc
Q 003106 558 LMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFL-------SH-----------DDTDPRDAG 616 (847)
Q Consensus 558 ~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~-------s~-----------d~t~~~d~~ 616 (847)
.+.|.+...++.. +.+..+||+++.........+++. ..++|. .+ -.+++.|++
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH-----S~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH-----SACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec-----cceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 4556655555433 233478999987665544433321 111121 01 117889999
Q ss_pred EEEEeccCCceeeE----------------------------------eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 003106 617 GRGMDVSQGFSFKE----------------------------------ANSVRASTSKVICCHFSSDGKLLATGGHDKKA 662 (847)
Q Consensus 617 v~vwd~~~~~~~~~----------------------------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 662 (847)
||+||+..+..-.. ..........|+|++++|+|.+||+|..-|+|
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence 99999886311000 00111234579999999999999999999999
Q ss_pred EEEECCCCceeEEEccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCC----
Q 003106 663 VLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK---- 735 (847)
Q Consensus 663 ~vwd~~~~~~~~~l~~h~~~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g---- 735 (847)
+|||+...+....++.|...|.|+.|+.. .++||+++.|.-|+|||+......+.++.+|.+.|++|.|.-.|
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 99999999998999999999999999863 46889999999999999987666777888888888888774322
Q ss_pred --------------------------------------------CeEEEEEeCCCcEEEEECCCCceEEEEeeC---Cce
Q 003106 736 --------------------------------------------DDLICSCDGDGEIRYWSINNGSCTRVFKVE---SFC 768 (847)
Q Consensus 736 --------------------------------------------~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---~~~ 768 (847)
..++++++.|..|+|||+.+++.++.|++. .+.
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 136679999999999999999999999864 233
Q ss_pred -EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 769 -CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 769 -v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|........+++.+.+.++.+.++|..... .....+.++..++...|..+| ..|++.++||.|.||++
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~nDC-----kHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFLNDC-----KHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeecccc-----hhheeecCCceEEEEEC
Confidence 333333456788889999999999844221 112223345666666666444 34999999999999987
No 97
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6e-19 Score=186.97 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=177.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEE------------------eecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANS------------------VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK 671 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~------------------l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~ 671 (847)
+..+-.|.|||+.--....+..+ ..+|++.|.+|+|+.. ...||+||.|.+|++||+.+++
T Consensus 198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~ 277 (463)
T KOG0270|consen 198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK 277 (463)
T ss_pred eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence 44566788898764322222222 2379999999999884 4689999999999999999999
Q ss_pred eeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 672 SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 672 ~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+..++..|.+.|.++.|+|. ..+|++|+.|++|++.|+|.....-..++ ..+.|-.+.|++...+.++++..||+|+-
T Consensus 278 p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 278 PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEe
Confidence 99999999999999999997 55889999999999999996443333333 46789999999999998989999999999
Q ss_pred EECCCC-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCC
Q 003106 751 WSINNG-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRE 827 (847)
Q Consensus 751 WD~~~~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 827 (847)
+|+|.. +++.+++.|...|.++++. ....+.+++.++.+.+|+....+....... .....+..+..+.+...
T Consensus 357 ~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-----~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 357 FDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-----SFKLGRLHCFALDPDVA 431 (463)
T ss_pred eecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-----cccccceeecccCCCcc
Confidence 999985 8999999999999888765 345677899999999998554433222111 11112233344445455
Q ss_pred cEEEEEeCCCeEEEEEccCC
Q 003106 828 CCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 828 ~~l~sGs~DG~V~vW~~gty 847 (847)
.+++.|+..+.++||++-++
T Consensus 432 ~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 432 FTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eEEEecCccceEEEeecccC
Confidence 77999999999999998654
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=5.1e-19 Score=188.85 Aligned_cols=224 Identities=15% Similarity=0.229 Sum_probs=165.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~ 685 (847)
..+..++|+|||+.....-.++..+. .....|++|.+.|||+.|++|++-.+|.|||+... .+...+..-.-...+
T Consensus 435 yTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyA 514 (705)
T KOG0639|consen 435 YTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 514 (705)
T ss_pred EecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhh
Confidence 45677899999998653333444443 24567999999999999999999999999999854 344445444456788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.+||.+.+++|+.||.|+|||+.+ ...++.|.||.+.+.||+.+++|.+|. ||+.|++||.||+++++.+.....
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF- 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDF- 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhh-
Confidence 99999999999999999999999998 888999999999999999999999877 999999999999999876544332
Q ss_pred CceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 766 SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 766 ~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...|.++... ...++..+.+++.+.+........ +. .....+.+.++.+..| +.++++.+.|..+.+|..
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yq-------lhlheScVLSlKFa~c-GkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQ-------LHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccc-ee-------ecccccEEEEEEeccc-CceeeecCchhhhhhccC
Confidence 2234444433 456777888888877765332111 00 1111223344445554 677888888888888875
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
-
T Consensus 663 P 663 (705)
T KOG0639|consen 663 P 663 (705)
T ss_pred c
Confidence 3
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-18 Score=192.04 Aligned_cols=235 Identities=17% Similarity=0.272 Sum_probs=192.3
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
...++++.|+++|.+++++..+ .|||+.+.+....+... +...|.+...... ++.+++.|..+|+....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----cCceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 5577899999999999887655 89999888776654431 2222322211122 78899999999998763
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC-CCEEEEEe--CCCc
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSS--FDKT 703 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~-~~~Lasgs--~Dg~ 703 (847)
.... ++.+|...|+.++|++|+++||+|+.|+.|.|||.....++..+..|...|.+++|+|- ...||+|+ .|++
T Consensus 292 ~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 292 HVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 3222 58899999999999999999999999999999999888999999999999999999996 55888876 5999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 781 (847)
|++||+.+ +..+.... ..+.|++|.|++..+.++.+.+ .++.|.||+..+.+.+..+.+|...|..+...++ ..+.
T Consensus 370 i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 370 IKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 99999998 66666654 4578999999999887776655 4678999999999999999999999988887655 7888
Q ss_pred EEcCCCcEEEEcCCc
Q 003106 782 DKLDAGDIQISDSLF 796 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~ 796 (847)
++..|.++++|+...
T Consensus 448 t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADETLRFWNLFD 462 (484)
T ss_pred EecccCcEEeccccC
Confidence 999999999998654
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-18 Score=169.94 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=163.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
.+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+|+.+.++.+|.+.|+||+.+.+.++|++|+.|.+++|||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe----CCCcEEEEECC-------CCceEEEEeeCCceEEE-EEecCCCEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSIN-------NGSCTRVFKVESFCCWC-VNAMNRPCL 780 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s----~Dg~V~iWD~~-------~~~~~~~~~~~~~~v~~-~~~~~~~~l 780 (847)
++++..++ ....|..+.|+.+|..++++.. ..+.|.++|++ ..+++..+..+...+.. +...-...+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 88888886 5678999999999886664432 24689999998 34566666665555444 444566788
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.++|.|.+||...... +......+...++. +...+ +..++++||.|.+.++||+.+
T Consensus 163 i~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind----~q~s~-d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKE--LVDSDEEHSSKIND----LQFSR-DRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EEecCCCcEEEEEcccCce--eeechhhhcccccc----ccccC-CcceEEecccCccceeeeccc
Confidence 9999999999999764322 22222222223322 22223 678999999999999999865
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=8.8e-18 Score=167.21 Aligned_cols=274 Identities=15% Similarity=0.217 Sum_probs=201.5
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
..+.+++|..||+.++.++.+ ++|+++...+..+.......++. ..++.+-.+.+ ++..|.+|++||+..+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv-dql~w~~~~~d~~atas~dk~ir~wd~r~~-- 97 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV-DQLCWDPKHPDLFATASGDKTIRIWDIRSG-- 97 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcch-hhheeCCCCCcceEEecCCceEEEEEeccC--
Confidence 346789999999999887765 88999887655543332222222 22333333333 7889999999999987
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
++...+....+. .-+.|+|+|.+++.++.|..|.+.|.++.+.+...+ ....+..++|+-++++|+.....|+|.|.
T Consensus 98 -k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 98 -KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred -cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 455554433333 457899999999999999999999999888776653 45568889999888888888888999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDA 786 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~ 786 (847)
.... -+.+..++.|...+.||.|+|+|+ +|++|+.|..|.+||+..--|++.|....-.|+.++|..+ ..+.+++++
T Consensus 175 syps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 175 SYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 9986 778999999999999999999998 5679999999999999999999999999999999988754 566778888
Q ss_pred CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC---------CeEEEEEc
Q 003106 787 GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD---------SSLSSFIA 844 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D---------G~V~vW~~ 844 (847)
..|.|-+.......-... .....+.++++| ...+|+-++.| |+|++|=+
T Consensus 253 h~IDIA~vetGd~~~eI~--------~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP--------CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ceEEeEecccCCeEEEee--------ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 888776644322211111 112233344455 45556555544 57777643
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.3e-20 Score=203.71 Aligned_cols=171 Identities=19% Similarity=0.334 Sum_probs=157.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..+|+|++||++.+ +.++++.+|...|..+.|+|-+.|+++|+.|+.+++||++...+.+.+.+|...|.+++|+
T Consensus 87 agsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls 163 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS 163 (825)
T ss_pred ccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec
Confidence 7888999999999976 6777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|+|+++++++.|.+|+|||+.. ++.+.+|++|.+.|.++.|+|. +.++++|+.|++|++||+++.+.+...+.....|
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred CCCceeeccCCcceeeeecccc-cccccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence 9999999999999999999998 8889999999999999999998 5688999999999999999999998888888889
Q ss_pred EEEEecCCCEEEEEcC
Q 003106 770 WCVNAMNRPCLWDKLD 785 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~ 785 (847)
.|..|....+.+....
T Consensus 242 ~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeeeecCCceeeecCc
Confidence 9998887766554433
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=4.2e-18 Score=171.69 Aligned_cols=202 Identities=22% Similarity=0.291 Sum_probs=150.4
Q ss_pred CCCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhccccc------c---ccCCCCC--ceEEeeecCC----CC
Q 003106 551 SGTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRL------V---EDGSLDD--NVESFLSHDD----TD 611 (847)
Q Consensus 551 ~~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~------~---~~g~~d~--~v~~~~s~d~----t~ 611 (847)
.|+.++.++.+.+ .|++++.++.+ -+||+....-.+.-.-+ + ....+.. .-..|+..|. ++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3444555665554 58888887766 68999765422211100 0 0111111 2234777776 78
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+.|.+++|||+.+- .+...|+ -.+.|++-+++| .-.+||+|..|-.|++.|+.+|..-+++.+|.+.|.+|.|
T Consensus 121 SFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 89999999999864 4444443 456788888888 3458889999999999999999999999999999999999
Q ss_pred cCCCCE-EEEEeCCCcEEEEECCCCCceEEEec--------------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 689 SPSMPR-LATSSFDKTVRVWDADNPGYSLRTFM--------------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 689 sp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~--------------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+|..++ |++|+.||.||+||++....++.++. .|.+.|.+++|..++.+++ +++.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~-~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA-SCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh-hccCccceEEeec
Confidence 999885 58999999999999997544544443 4678899999999988654 8889999999999
Q ss_pred CCCc
Q 003106 754 NNGS 757 (847)
Q Consensus 754 ~~~~ 757 (847)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 8875
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=182.72 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=176.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..+.++|..++ ..+.+++||...|+++.|+++...+++++.|..|+||.+........+..|..+|+.+..+
T Consensus 236 TGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred ecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeec
Confidence 4556666677777655 6778899999999999999999999999999999999998777777888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|.|+||++++.||++.+.|+++ +..+..... ..-.+++..|||||- +|.+|..||.|+|||++++..+..|.+|..
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccC-CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999999999999999999998 555554432 234589999999975 888999999999999999999999999999
Q ss_pred eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 ~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.|..+.|.. +.++...++++.|++||.+... .+..+.......+....++ . .+.+|+.++.|=.|++++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD----~-SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFD----Q-SGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEc----C-CCCeEEeecceeEEEEEe
Confidence 999998864 5566788888889999966332 1222111111122333333 2 477888888887777666
No 105
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=1.7e-19 Score=177.96 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=173.1
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+..-+.+|.+|++.|+.+.+..+..+-|+++.|-+.+|||.-++..+..| .|...|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhh
Confidence 44678899999999999999999999999999999999999999999988 58889999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCC
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDA 786 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~ 786 (847)
||+..+......+.+|.+.|..+.|.....++| +.+.|++||+||.+++..+..+.... .|.++....+..+.+....
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEecC
Confidence 999998888999999999999999998877776 77889999999999999998887544 4677777888888899999
Q ss_pred CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 787 GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.|..||...... + .....+..+-+...++ +..++++|+.|+.++.||..|
T Consensus 205 ssV~Fwdaksf~~--l------Ks~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 205 SSVKFWDAKSFGL--L------KSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred ceeEEeccccccc--e------eeccCccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 9999999553221 1 1111222222222234 568999999999999998654
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=1.7e-18 Score=201.31 Aligned_cols=154 Identities=24% Similarity=0.384 Sum_probs=132.7
Q ss_pred CCC--CCCcEEEEeccCCc---------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------
Q 003106 610 TDP--RDAGGRGMDVSQGF---------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--------- 669 (847)
Q Consensus 610 t~~--~d~~v~vwd~~~~~---------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--------- 669 (847)
+++ .|+.+++|+...-. .-+.+.++..|.+.|+|+.|++||++||+|++|+.|.||+...
T Consensus 30 TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs 109 (942)
T KOG0973|consen 30 TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS 109 (942)
T ss_pred cCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc
Confidence 455 67777788855321 1345677889999999999999999999999999999998662
Q ss_pred ---------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 670 ---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 670 ---------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.+.+..+.+|...|.+|+|+|++.+|++++.|++|.|||.++ ...+.++.+|.+.|..|.|+|-|+ +|+
T Consensus 110 ~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~H~s~VKGvs~DP~Gk-y~A 187 (942)
T KOG0973|consen 110 TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRGHQSLVKGVSWDPIGK-YFA 187 (942)
T ss_pred cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeecccccccceEECCccC-eee
Confidence 246778899999999999999999999999999999999999 589999999999999999999998 667
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeC
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
+-+.|++|+||++.+..+.+.+..+
T Consensus 188 SqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 188 SQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred eecCCceEEEEEcccceeeEeeccc
Confidence 9999999999998887777776644
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=176.38 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=158.6
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC--EEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~--~Lasgs~Dg~V 704 (847)
++.++..+.+|.+.|+|++++ +.++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+... +|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 567788899999999999985 89999999999999999999999999999999999999999765 89999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
.+|++.. ..++.++++|.+.|+.|+.||.++ |.++.+.|+.++.||+-.|+.-..++....... +.+.+....|...
T Consensus 110 ~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~-v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 110 IIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL-VSWSPQGDHFVVS 186 (362)
T ss_pred EEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCccee-eEEcCCCCEEEEE
Confidence 9999998 788999999999999999999987 667999999999999999886665554332222 4445555544555
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....|.+|...... ++..... .....+..| .++..+++|..|+.|++||..
T Consensus 187 ~~~~i~i~q~d~A~--v~~~i~~--~~r~l~~~~------l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 187 GRNKIDIYQLDNAS--VFREIEN--PKRILCATF------LDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eccEEEEEecccHh--Hhhhhhc--cccceeeee------cCCceEEEecCCceEEEeccC
Confidence 55567777644221 1211111 011111112 257889999999999999974
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=7.6e-18 Score=179.32 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=192.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhcc-cc----------ccc--cCCCCCceEEeeecCC----
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADM-DR----------LVE--DGSLDDNVESFLSHDD---- 609 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~-~~----------~~~--~g~~d~~v~~~~s~d~---- 609 (847)
..|-.+..++++++|+++.+..+.+ .-|++.+++....+ .+ +.. .+.....+++..+.|+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3455677899999999988887655 45998887643111 11 111 1344556777788888
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..|.|||..+. +.+.++++|.+.|.+++|-.....|++++.|++|+||+++....+.++.+|.+.|.+|...
T Consensus 219 tgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred ecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 8999999999999966 6778899999999999999888899999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---- 765 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---- 765 (847)
.-.+.+.+|+.|++++||++. ......|.+|.+.+-|++|-.+. .|++|+.||.|.+|++-+.+++.+....
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred cccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeecccccc
Confidence 777777777799999999995 46667788999999999998773 4569999999999999999988877532
Q ss_pred --------CceEEEEEec-CCCEEEEEcCCCcEEEEcCC
Q 003106 766 --------SFCCWCVNAM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 766 --------~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+++.. ....+.+++.+|+|++|-..
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 1266666654 45677788899999999854
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=170.17 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=195.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~ 622 (847)
.|+..++.++|+.||+++++...+ +|||+++.+..+. ..+-....+|....+.+++|. ...+..++++|-+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 556678899999999999886554 8999998765443 111122233444444455554 2335566777765
Q ss_pred cCCce------eeEeE---EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 623 SQGFS------FKEAN---SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 623 ~~~~~------~~~~~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
.+... +..+. .-+-|.-.|..+-....+++|++++.|.+|.|||++ |+.+..+......-+..+.+|+|+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCc
Confidence 54211 11111 223566778888888889999999999999999999 899888877777778899999999
Q ss_pred EEEEEeCCCcEEEEECCCC--C-----ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----C---ceE
Q 003106 694 RLATSSFDKTVRVWDADNP--G-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----G---SCT 759 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~--~-----~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~----~---~~~ 759 (847)
+|++++.--.|+||.+--. + ..+..++||.+.|..++|+++.+++ ++.+.||++||||+.- + +.+
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee-EEEecCCcEEEeeccceEecCCCchHh
Confidence 9999999889999987321 1 2356679999999999999998865 5999999999999852 1 222
Q ss_pred EEEe----eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC
Q 003106 760 RVFK----VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 760 ~~~~----~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
+++. ........+...+...+++.+.+..+.++.... ...+..+...+...+....|+. ++.++++ |+
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~--g~~~~~~e~~h~~~Is~is~~~-----~g~~~at-cG 392 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED--GKDYPELEDIHSTTISSISYSS-----DGKYIAT-CG 392 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc--CccchhHHHhhcCceeeEEecC-----CCcEEee-ec
Confidence 2221 112222345556667777888888888887664 3334444455677777777772 4555555 56
Q ss_pred CCeEEEEE
Q 003106 836 DSSLSSFI 843 (847)
Q Consensus 836 DG~V~vW~ 843 (847)
|..|+|+.
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 77888865
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=179.92 Aligned_cols=145 Identities=23% Similarity=0.392 Sum_probs=124.2
Q ss_pred CCCCCCcEEEEeccCCceeeE-eEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKE-ANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~-~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~ 684 (847)
++.-.+.|++|...++ .|+. ...+.+|+..|-+|+|+|. ...|++||.||+|+|||++.+ .++ ..+.|.+.|+
T Consensus 229 sGDc~~~I~lw~~~~g-~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTG-SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccC-ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCcee
Confidence 4445677899999887 5554 3456789999999999994 468999999999999999976 333 3479999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|.|+..-.+||+|++||+++|||+|. .+..+..|+-|..+|++|.|+|....+|++++.|..|.|||+...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999988999999999999999986 246688999999999999999998888889999999999999754
No 111
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=2.8e-18 Score=179.10 Aligned_cols=209 Identities=19% Similarity=0.266 Sum_probs=156.9
Q ss_pred eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCC-CEEEEEe
Q 003106 629 KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSS 699 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs 699 (847)
+..-.+.+|++.|.+++|+| +...||+||+|.+|.||.+... +++..|.+|...|--|.|+|.. +.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34445789999999999999 6789999999999999998642 4577889999999999999984 5789999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc--eEEEEEecCC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF--CCWCVNAMNR 777 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~--~v~~~~~~~~ 777 (847)
.|.+|.|||+.+ ++.+.++. |.+.|++++|+.+|. +|++.+.|..|||||.++++.+..-.+|.+ ....+...+.
T Consensus 152 ~Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999 77777776 999999999999988 667999999999999999999888766654 2344443333
Q ss_pred CEEEEE---cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDK---LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~---~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+-++ .++..+.+||.......+... ..-.+..+....|+ +...-+.++|-+|+.||+|++.
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elDtSnGvl~PFyD----~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELDTSNGVLLPFYD----PDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeE-EeccCCceEEeeec----CCCCEEEEEecCCcceEEEEec
Confidence 332222 345568889865444432211 11123333344444 3233457788899999999873
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.6e-19 Score=197.17 Aligned_cols=178 Identities=19% Similarity=0.306 Sum_probs=152.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||++.. +...++.+....|++|.|+| .+.+|+++.+.|.|.+||++ ..++...+.+|.++|.|+.
T Consensus 151 SGSQDg~vK~~DlR~~---~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSK---KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred ecCCCceEEEEeeecc---cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 7999999999999866 56677788899999999999 78899999999999999998 5677788899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCC-ceEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
|+|++.+||||+.|+.|+|||..+.. ..+.++ ....+|.+|.|-|...+.|++|+ .|-.|+|||++.. -+..+|.
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee
Confidence 99999999999999999999998632 223333 24568999999999999998887 4789999999865 4678899
Q ss_pred eCCceEEEEEecC--CCEEEEEcCCCcEEE
Q 003106 764 VESFCCWCVNAMN--RPCLWDKLDAGDIQI 791 (847)
Q Consensus 764 ~~~~~v~~~~~~~--~~~l~~~~~~g~i~i 791 (847)
.|...+..+++.. ...+|+++.++.+..
T Consensus 307 eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 307 EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccCccccceeccCCCceeeEeecCccHHHH
Confidence 9999988888765 778999999987654
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-17 Score=169.77 Aligned_cols=166 Identities=22% Similarity=0.287 Sum_probs=137.8
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC--CCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~--Dg~V~ 705 (847)
+++.+.+..-.+.|++|.|+.+|.+|++++.|-+|+|||+.+++.++++..+...|..++|....+.++.++. |.+||
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4555666667899999999999999999999999999999999999999988889999999877777766665 99999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc-
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL- 784 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~- 784 (847)
+.++.+ .+.++.|.||...|.+|+.+|-++ .+++++.|++||+||+|..+|...+......+. +++....+++..
T Consensus 84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~--AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA--AFDPEGLIFALAN 159 (311)
T ss_pred EEEeec-CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcce--eECCCCcEEEEec
Confidence 999998 788999999999999999999986 555999999999999999999888876665544 344555554444
Q ss_pred CCCcEEEEcCCcc
Q 003106 785 DAGDIQISDSLFI 797 (847)
Q Consensus 785 ~~g~i~i~d~~~~ 797 (847)
....|.+||.+..
T Consensus 160 ~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 160 GSELIKLYDLRSF 172 (311)
T ss_pred CCCeEEEEEeccc
Confidence 3447888875443
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=9e-18 Score=174.57 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=172.8
Q ss_pred CCCCcEEEEeccCC-------------ceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee---E
Q 003106 612 PRDAGGRGMDVSQG-------------FSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSK---T 674 (847)
Q Consensus 612 ~~d~~v~vwd~~~~-------------~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~---~ 674 (847)
...|.|.|||+... ..++++.++.+|...=+.|+||| ....|++|..-+.|++|...++.-. .
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 45678899997532 24678889999999999999999 2335888888899999998876432 2
Q ss_pred EEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 675 NLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
-|.+|+..|.+|.|+|.. ..|++||.||+|+|||+|.. .+.....+.|.+.|+.|.|+.+-. +|++|+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEE
Confidence 366899999999999975 47899999999999999984 222333388999999999999877 889999999999999
Q ss_pred CCC---CceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc----eee-----------ecccccCCCC
Q 003106 753 INN---GSCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA----NIF-----------CGLGWYGSDE 812 (847)
Q Consensus 753 ~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~----~~~-----------~~~~~~~~~~ 812 (847)
+|. +..+..|+.|...|+|+.+. ....+.++..+..|.+||...... ... .-+.+.+-..
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke 410 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE 410 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence 986 56889999999999999876 456788888999999999432211 000 1111223334
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+....|+ +-...+|++-+.|| +.||+.
T Consensus 411 ~KevhWH----~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 411 VKEVHWH----RQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhhheec----cCCCCeEEEecccc-eeEEEe
Confidence 4444444 44567899999998 566654
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-17 Score=167.90 Aligned_cols=222 Identities=18% Similarity=0.201 Sum_probs=157.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.||++++||+... .+.....|..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|...|.||.+++..
T Consensus 33 WDgslrlYdv~~~----~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 33 WDGSLRLYDVPAN----SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred ccCcEEEEeccch----hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC
Confidence 4777888888765 2222234899999999985 678999999999999999987664 455799999999999988
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCCW 770 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v~ 770 (847)
..+++|++|++|++||.+. ...+.++.. ...|.+++...+ .|+.|+.|..|.+||+++........ .-...++
T Consensus 107 ~~vIsgsWD~~ik~wD~R~-~~~~~~~d~-~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR 181 (323)
T KOG1036|consen 107 GCVISGSWDKTIKFWDPRN-KVVVGTFDQ-GKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTR 181 (323)
T ss_pred CeEEEcccCccEEEEeccc-ccccccccc-CceEEEEeccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEE
Confidence 8999999999999999997 455555543 347988887744 44577779999999999865433222 1223455
Q ss_pred EEEec-CCCEEEEEcCCCcEEE--EcCC----cccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 771 CVNAM-NRPCLWDKLDAGDIQI--SDSL----FINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 771 ~~~~~-~~~~l~~~~~~g~i~i--~d~~----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|+... +..-++.++-+|.|.+ +|.. .....+.|+............+-.++++++ ...|+||+.||.|.+||
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEcc
Confidence 55543 3445566777777665 3322 122233344333344444444556667775 77899999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
..+
T Consensus 261 ~~~ 263 (323)
T KOG1036|consen 261 LFN 263 (323)
T ss_pred Ccc
Confidence 864
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=155.40 Aligned_cols=285 Identities=16% Similarity=0.169 Sum_probs=200.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEe---------CCCCchhhccc---cccccCCCCCceE-EeeecCC----CCCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWD---------DKDLELRADMD---RLVEDGSLDDNVE-SFLSHDD----TDPR 613 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD---------~~~~~~~~~~~---~~~~~g~~d~~v~-~~~s~d~----t~~~ 613 (847)
..+..+..+.|.|.|...+.++..+-+. ++.+...+... .+.....+.+.+- ..+++++ +++.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 3445678899999998766665553322 22111111111 1112222333333 3345555 8899
Q ss_pred CCcEEEEeccCC--ceeeEeEEeecCCCCEEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCceeEEEccCCCCeEEE
Q 003106 614 DAGGRGMDVSQG--FSFKEANSVRASTSKVICCHFSSD----GKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~--~~~~~~~~l~~h~~~V~~l~fspd----g~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v 686 (847)
|++|++...... ........+.-|.+.|++++|-.+ +.+|++++ .|.+|++-|..++.....+.+|++.|.++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 999998776543 112233456779999999999763 45777765 47788888999999999999999999987
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc--C-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++-++-.|++|+.|.+||+||++- ..++.++.. | .+.|.+|+..|.|+ +|++|-.|....+||++.++.+
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCcee
Confidence 455688999999999999999998 667776632 2 36799999999987 7889999999999999999999
Q ss_pred EEEeeCCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcc--cceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 760 RVFKVESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFI--NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
..|..|...|.|+.|.... ++.+++.+..|++.|.... +.......+ .+.+......|. + .+-.|++.+.|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh----~-~d~sfisssad 340 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWH----P-QDFSFISSSAD 340 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE-eccCceEEEEec----C-ccceeeeccCc
Confidence 9999999999999988654 5678888888998884321 111111111 122333333455 3 34558899999
Q ss_pred CeEEEEEc
Q 003106 837 SSLSSFIA 844 (847)
Q Consensus 837 G~V~vW~~ 844 (847)
.++.+|.+
T Consensus 341 kt~tlwa~ 348 (350)
T KOG0641|consen 341 KTATLWAL 348 (350)
T ss_pred ceEEEecc
Confidence 99999975
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.77 E-value=6.2e-18 Score=181.51 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=164.9
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.....+++|+..|.++++.|.|.+|++|+.|-+|++||+... +..+.+. .....|.++.|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 345568899999999999999999999999999999998632 2222222 34557999999999999999998999
Q ss_pred EEEEECCCCCceE------------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEee-----C
Q 003106 704 VRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKV-----E 765 (847)
Q Consensus 704 V~iWD~~~~~~~~------------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~-----~ 765 (847)
++|+|-+. ...+ ...+||...++|.+|+|+.+..|+||+.||++||||+...+ -+.+|+. .
T Consensus 238 akl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 238 AKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 99999874 3322 23368999999999999998889999999999999998754 3334432 2
Q ss_pred CceEEEEEec-CCCEEEEEcCCCcEEEEcC--CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 766 SFCCWCVNAM-NRPCLWDKLDAGDIQISDS--LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 766 ~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
...+..+.+. ....+.+++.+|.|.+|+. .+.+..+.....+.....++++.|+ .++++|++-+.|+++++|
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeee
Confidence 2344445544 4556889999999999993 4455556666666666778877666 378999999999999999
Q ss_pred EccCC
Q 003106 843 IAGTY 847 (847)
Q Consensus 843 ~~gty 847 (847)
|+..|
T Consensus 392 DLrq~ 396 (641)
T KOG0772|consen 392 DLRQF 396 (641)
T ss_pred ecccc
Confidence 98643
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=8.6e-17 Score=162.30 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=148.8
Q ss_pred CCCCCCcEEEEeccCCc-------eeeEeE-----EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 003106 610 TDPRDAGGRGMDVSQGF-------SFKEAN-----SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~-------~~~~~~-----~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l 676 (847)
+++.|+.|.+||+.... ..+.+. .-.+|+-.|.++.|-| |...|.+++.|++++|||..+.+....|
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 57788888999987642 112222 1246888999999999 7789999999999999999999888888
Q ss_pred ccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 677 EEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+ ..+.|++-+++|- ..+||+|..|-.|++.|+.. +.+..++.||.+.|.+|.|+|..+++|++|+.||.||+||+
T Consensus 141 ~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 141 K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDI 218 (397)
T ss_pred e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEe
Confidence 5 4567888889884 33678888899999999998 88899999999999999999999999999999999999999
Q ss_pred CCC-ceEEEEeeC--------------CceEEEEEec-CCCEEEEEcCCCcEEEEcCCc
Q 003106 754 NNG-SCTRVFKVE--------------SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 754 ~~~-~~~~~~~~~--------------~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.- .|..++..| ...+..+++. ....+|....+..+++|+...
T Consensus 219 Rrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 219 RRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 865 566666543 3445555543 455788889999999998553
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=173.13 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=171.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.||.|++||+... .+..++++|.+.|..|++.- ..+++++.|++|+.|.++. .+++++.+ ...+..|+-+
T Consensus 84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 7889999999999865 67889999999999999986 7899999999999999874 46677643 4567888888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce-
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC- 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~- 768 (847)
..+..++||+. .|.|||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+.+++.+......
T Consensus 157 ~~~~~FaTcGe--~i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGE--QIDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCc--eeeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 88888999975 499999987 67788887778889999999999999999999999999999999887766543221
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-.|+.. ....+.++.+|..++.+|.+.....+....++ .+.+.++++.+ .+.-|++||.|.+||||.+.
T Consensus 234 ~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh------vsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 234 TICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH------VSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ceecCc-cccceeeccccccceehhhhhhcccchhhccc------ceeEEEeccCC-CcchhccccccceEEEeecC
Confidence 222332 44456678899999999977665544433332 23344455555 57779999999999999873
No 120
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=4e-17 Score=179.55 Aligned_cols=228 Identities=19% Similarity=0.183 Sum_probs=160.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------------- 671 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~----------------- 671 (847)
++..|.++++||+..+ .+.-...+.+|.+.|.++||.+ |...|++|+.||.|.|||++...
T Consensus 117 sasGDsT~r~Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EccCCceeeeeeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 7888999999999987 3333335889999999999999 55689999999999999986321
Q ss_pred ----------eeEEEccCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCCce-------EEEeccC---CCCeE
Q 003106 672 ----------SKTNLEEHSSLITD---VRFSPSMPRLATSSF-DKTVRVWDADNPGYS-------LRTFMGH---SASVM 727 (847)
Q Consensus 672 ----------~~~~l~~h~~~I~~---v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~-------~~~~~~h---~~~V~ 727 (847)
.++..+.+...|.+ +.|..|...||+++. |+.|+|||+++.... +..+.-| .-.+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112345556666 667778889999887 999999999973211 1112223 33577
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCC---ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee
Q 003106 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKVES---FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF 802 (847)
Q Consensus 728 sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~---~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~ 802 (847)
++..+..|.+++|+|. |+.|++||+.+-. .+..|.++. ..+..+...++..+..++.+...++|..........
T Consensus 276 nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 8888888999998888 9999999998743 334444432 234444445677888999999999998654333222
Q ss_pred ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 803 CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 803 ~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
... .+...++.+.|... ...-+++++.|..++||++-
T Consensus 355 ~l~--Ght~eVt~V~w~pS----~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 355 LLL--GHTREVTTVRWLPS----ATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred hhh--CcceEEEEEeeccc----cCCCceeeccCcceEEEecc
Confidence 222 23445566666633 33448888999999999984
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=182.89 Aligned_cols=235 Identities=20% Similarity=0.224 Sum_probs=181.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCc-hhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEe
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLE-LRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~-~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd 621 (847)
+.|..+.+.++|.+||.++++.+++ ++|+....+ ..+.++. .+ ....++..+. ++..+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g----~~v~~ia~~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SG----ELVSSIACYSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cC----ceeEEEeecccceEEeeccceEEEee
Confidence 4566678899999999999988766 889876552 2222211 11 1222222222 688899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+..+. .-..+..-+-++++++|+.+|+++|.||+|-.|+|-++.+......+++|.++|.+|.|+|.+++||+.+.|
T Consensus 83 fps~~---~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 83 FPSGE---EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred CCCCC---ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence 88763 333344456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--CceEEE
Q 003106 702 KTVRVWDADNPGYSLRTFMGH--------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SFCCWC 771 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h--------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~~v~~ 771 (847)
|.|+|||+.+ +.+..++.+- ...+..++|+|++..++ ..+.|+.|++|+..+++....+... ...+.+
T Consensus 160 G~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la-~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 160 GKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA-VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred ceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEE-eeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999999997 6555554331 44577899999988776 4455899999999999988877643 333555
Q ss_pred EEec-CCCEEEEEcCCCcEEEEcCCc
Q 003106 772 VNAM-NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 772 ~~~~-~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+. ++.++.++.-+|.|.|||...
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 5554 566888999999999999763
No 122
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.7e-16 Score=159.95 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=192.0
Q ss_pred eeccccCCCCCCCcceEEEecCCCeEeec----CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEE
Q 003106 543 ISMPALPHSGTTSKPLMMFGTDGAGTLTS----PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGR 618 (847)
Q Consensus 543 ~~~~~~~~~~~~~~~~v~~s~dG~~~~~~----~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~ 618 (847)
+.+.+........+..+.+.+.+..+... ....||++...-.... +++ ..+..-...+.-..+.
T Consensus 29 FlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~---ila---------T~yn~~s~s~vl~~aa 96 (370)
T KOG1007|consen 29 FLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR---ILA---------TVYNDTSDSGVLTGAA 96 (370)
T ss_pred EEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc---eEE---------EEEeccCCCcceeeEE
Confidence 33444444555556677777766654332 3446787765432221 111 1111111222334566
Q ss_pred EEeccCCc------eeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEc-----cCCCCeEE
Q 003106 619 GMDVSQGF------SFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITD 685 (847)
Q Consensus 619 vwd~~~~~------~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~-----~h~~~I~~ 685 (847)
||.+.... +++.+..+. .+-+.|.|+.|.|++..|++-. |..|.+|+++.... +..+. +|....++
T Consensus 97 iw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 97 IWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTS 175 (370)
T ss_pred EEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecc
Confidence 78776532 345555554 6677999999999999999875 88999999986554 44432 35667889
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEE
Q 003106 686 VRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVF 762 (847)
Q Consensus 686 v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~ 762 (847)
-+|+| +++.+++.+ |++++.||+|+..+....-..|...|..++|+|+..++|++|+.||.|+|||+|.. ..+..+
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 99998 677777766 89999999998555555556788999999999999999999999999999999965 588899
Q ss_pred eeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeec---------------------cccc-CCCCcccccc
Q 003106 763 KVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCG---------------------LGWY-GSDEIPAPSW 818 (847)
Q Consensus 763 ~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~---------------------~~~~-~~~~~~~~~w 818 (847)
.+|..+||++.+.. +-.+.+++.+..|.++....+....... .+.. ..+.....+|
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 99999999998764 4467788888888887633322111000 0000 0111122233
Q ss_pred ccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 819 KVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 819 ~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+++...+.-+|++-++||.|.|-.+
T Consensus 335 ~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 335 ALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred EEeeccCCCeeEEEeccCceEEeecC
Confidence 33444556778999999999988765
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.2e-16 Score=173.91 Aligned_cols=272 Identities=15% Similarity=0.194 Sum_probs=197.6
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
.+.+++|+.+.+.++.+. ...||++...=+.. .+-.|.-+..++.....++ +.+.+|.|..||+.+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~----~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-- 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE----PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-- 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee----EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--
Confidence 467888888877766544 44899998753322 1223345555554333333 7788999999999966
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|.|+|++..|++|+.||.|+
T Consensus 101 -k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 101 -KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred -ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 6777788889999999999999999999999988888887766543 3445678999999999999999999999999
Q ss_pred EEECCCCCceEEE-------e-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC
Q 003106 706 VWDADNPGYSLRT-------F-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 706 iWD~~~~~~~~~~-------~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+||+.. +..+.. + ++....|++|.|-.++ .+++|+..|+|.+||...+..+..++.|..-|.|+...+.
T Consensus 180 iwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 180 IWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 999998 443331 1 1234568999998775 5679999999999999999999999999999999987654
Q ss_pred -CEEEEEcCCCcEEEEcCCcccceeeeccc--ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 778 -PCLWDKLDAGDIQISDSLFINANIFCGLG--WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 778 -~~l~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..++++..++.|.-+........ +.... ..+..++ +.|. .-+..+++|+.|+++.+-..
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~-wv~~~~r~~h~hdv--rs~a-----v~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSE-WVINSRRDLHAHDV--RSMA-----VIENALISGGRDFTLAICSS 318 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccc-eeeeccccCCcccc--eeee-----eecceEEecceeeEEEEccc
Confidence 78888888888776653322111 11111 1112222 2222 12457999999998877544
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.3e-17 Score=162.79 Aligned_cols=209 Identities=17% Similarity=0.148 Sum_probs=161.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD~ 709 (847)
..|.+.|.++...--|++||||+.|++|+||.++.. +.+.+|.+|.++|+.++|.. -|..||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 569999999988889999999999999999999843 67889999999999999965 5899999999999999998
Q ss_pred CCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC---ceEEEEeeCCceEEEEEecC--------
Q 003106 710 DNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG---SCTRVFKVESFCCWCVNAMN-------- 776 (847)
Q Consensus 710 ~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~-------- 776 (847)
.++. .....+..|.+.|++|+|.|.+ ..+|++++.||.|.|.++++. ...+....|...|.+++..+
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8732 1245567899999999999974 336678889999999999864 23345567777777665432
Q ss_pred -------CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 777 -------RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 777 -------~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..++.++..|..|+||+.....-... .+...+.+.+....|.+...- ...+|++++.||+|.||..+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-~~l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-RTLEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhh-hhhhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEec
Confidence 24578888899999998554322222 222335666777778765533 35789999999999999764
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-15 Score=147.31 Aligned_cols=237 Identities=17% Similarity=0.219 Sum_probs=170.7
Q ss_pred ccCCCCCCCcceEEEecCCCeEeecCCCeE-----EeCCCCchh-hccccccccCCCCCceEEeeecCC----------C
Q 003106 547 ALPHSGTTSKPLMMFGTDGAGTLTSPSNQL-----WDDKDLELR-ADMDRLVEDGSLDDNVESFLSHDD----------T 610 (847)
Q Consensus 547 ~~~~~~~~~~~~v~~s~dG~~~~~~~~~~i-----WD~~~~~~~-~~~~~~~~~g~~d~~v~~~~s~d~----------t 610 (847)
.....+..++.+++|+|+|..+++++.++- ++.+++... .+++... +|+.|+-....++ .
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm----hdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM----HDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee----cCCceeeeEEecCCCcCceEEEec
Confidence 334455667889999999999999887742 333333322 1222222 3334433222221 3
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-------CCCCe
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLI 683 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~I 683 (847)
+..|..|.+-|..++ ..+..+.+|++.|.++- +=++-.|++|+.|.+|++||++-..++.++.. ..+.|
T Consensus 159 gagdc~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred CCCcceEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 456677777777766 56667889999998874 22678999999999999999998888877642 23679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----ceE
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCT 759 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----~~~ 759 (847)
.+|+..|.|++|++|-.|....+||++. +..+..|..|...|.||.|+|... ++++|+.|..|++-|+... -.+
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcCce
Confidence 9999999999999999999999999997 888999999999999999999865 5569999999999998743 233
Q ss_pred EEEeeCCce-EEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 760 RVFKVESFC-CWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 760 ~~~~~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.+...|... +.|-....+..+.+.+.++.+.+|.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 344445444 4444434455566667777777775
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.5e-16 Score=161.50 Aligned_cols=196 Identities=15% Similarity=0.283 Sum_probs=143.1
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-Ccee-EEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 636 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 636 ~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
...+.|.+|+||| ...+|+.||+|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4678899999999 666777999999999999985 3333 34457999999999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
+ .+..+..|.++|.++.|-+... .+|+||+.|++|++||+|....+.++..... +++++... ..+..+..++.|.+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~~-pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVLY-PMAVVATAERHIAV 180 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhccC-ceeEEEecCCcEEE
Confidence 4 5677778999999999987643 3677999999999999999998888876544 55554333 34456667778888
Q ss_pred EcCCcccceeeecccccCCCCccccccc---cccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINANIFCGLGWYGSDEIPAPSWK---VSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~~~~~~w~---~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++............ + -.-|- ++|.. +..-++.|+-.|.|.|..+
T Consensus 181 ynL~n~~te~k~~~----S----pLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 181 YNLENPPTEFKRIE----S----PLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred EEcCCCcchhhhhc----C----cccceeeEEEEEe-cCCceEeeeecceEEEEec
Confidence 87542211111100 0 01122 23333 3334578888888777654
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=162.18 Aligned_cols=230 Identities=19% Similarity=0.224 Sum_probs=182.8
Q ss_pred cCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEec-cCCceeeEeEEee
Q 003106 563 TDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDV-SQGFSFKEANSVR 635 (847)
Q Consensus 563 ~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~-~~~~~~~~~~~l~ 635 (847)
|+..+.++++.+ ++||.-+++++..+..+-+...+....++-+++|+ .++...+||++|+ +.|.......++.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 444444554433 89999999999887776666666667777889998 6888899999999 4553333333322
Q ss_pred ----cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 003106 636 ----ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDA 709 (847)
Q Consensus 636 ----~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~ 709 (847)
+..+.|.|++|+| +.+.++.|+.-..+-||.-....++..+-+|.+.|+.++|+++|+.|++|.. |-.|.+||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 3378899999999 6779999999999999999999999999999999999999999999999985 788999999
Q ss_pred CCCCceEEEeccCCC-CeEEEEE--ecCCCeEEEEEeCCCcEEEEECCC-CceEEEEeeCCceEEEEEecCCCEEEEEcC
Q 003106 710 DNPGYSLRTFMGHSA-SVMSLDF--HPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKVESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~-~V~sl~f--sp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 785 (847)
|....++..+..|.+ .=-.|-| .|+++ +|++|+.||.|++||++. +..+.++..+..++..+......-+.+.+.
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 987788888887765 2234444 56766 777999999999999998 777888888999999998877777777666
Q ss_pred CCcEEEEc
Q 003106 786 AGDIQISD 793 (847)
Q Consensus 786 ~g~i~i~d 793 (847)
+..+..+.
T Consensus 360 Gqr~f~~~ 367 (406)
T KOG2919|consen 360 GQRIFKYP 367 (406)
T ss_pred CceeecCC
Confidence 66554443
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=169.70 Aligned_cols=221 Identities=18% Similarity=0.287 Sum_probs=171.1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+-.++.|.+|++..+. -....+.++ ...|.+++|+ ++.+|++.+.+|.|.-||+.+++.+..+....+.|++++.+
T Consensus 43 sRt~g~IEiwN~~~~w--~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~ 119 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNNW--FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN 119 (691)
T ss_pred eccCCcEEEEccCCCc--eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC
Confidence 5578999999999863 344445544 5679999999 66788888999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---- 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---- 763 (847)
|.++.++.||+||.+.++++.. +++. +.|...+++|.+|+|+|++.++ ++|+.||.|++||+.++..++...
T Consensus 120 p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d 197 (691)
T KOG2048|consen 120 PENTILAIGCDDGVLYDFSIGP-DKITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKSGQTLHIITMQLD 197 (691)
T ss_pred CccceEEeecCCceEEEEecCC-ceEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCCCceEEEeeeccc
Confidence 9999999999999888888876 4432 2233456899999999998755 599999999999999998776222
Q ss_pred ----eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 764 ----VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 764 ----~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
.....||++.+..+..+.++.+.|.|.+||..+.. ........ ..++.+ +.. ..+++++++++-|+.|
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT--LiqS~~~h-~adVl~----Lav-~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT--LIQSHSCH-DADVLA----LAV-ADNEDRVFSAGVDPKI 269 (691)
T ss_pred ccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc--hhhhhhhh-hcceeE----EEE-cCCCCeEEEccCCCce
Confidence 24567899999999999999999999999976432 22222211 112211 111 2257889999999998
Q ss_pred EEEEc
Q 003106 840 SSFIA 844 (847)
Q Consensus 840 ~vW~~ 844 (847)
.-|..
T Consensus 270 i~~~~ 274 (691)
T KOG2048|consen 270 IQYSL 274 (691)
T ss_pred EEEEe
Confidence 87765
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=169.54 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=171.3
Q ss_pred CcceEEEecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC--
Q 003106 555 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG-- 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~-- 625 (847)
....+..+++|.+++++ +...+|.+.+|.+...+... +-...++.++.|+ +++.||.|.+|++..-
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 35677889999999887 34489999999887654321 2233344566666 8999999999997642
Q ss_pred ----ceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 626 ----FSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 626 ----~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
...+++..+..|+-+|+++...+. ..+|+|+|.|.+|++||+..+.++.++. ....|++|+.+|-++.+++|+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC
Confidence 256788889999999999998874 3689999999999999999999988874 567899999999999999999
Q ss_pred CCCcEEEEECCCC---------------CceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 700 FDKTVRVWDADNP---------------GYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 700 ~Dg~V~iWD~~~~---------------~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+|.|.+.++... ...+..+.||.. .|+|++.+-||. +|++|+.||.|+|||+.+..|++++
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999999887542 123567789988 999999999987 6779999999999999999999888
Q ss_pred eeCCceEEEEE
Q 003106 763 KVESFCCWCVN 773 (847)
Q Consensus 763 ~~~~~~v~~~~ 773 (847)
..-.+.|..+.
T Consensus 316 ~~~kgpVtnL~ 326 (476)
T KOG0646|consen 316 QTSKGPVTNLQ 326 (476)
T ss_pred hhhccccceeE
Confidence 75445554444
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2.9e-16 Score=166.73 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=144.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+++.|.+|++||+.++ ++..++..|.+.|.++.|+| ...+|++|+.|++|+|+|++........-...+.|..|+|
T Consensus 261 SgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred ecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 7899999999999988 78888889999999999999 5679999999999999999842222111124567999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE--eeC
Q 003106 689 SPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KVE 765 (847)
Q Consensus 689 sp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~--~~~ 765 (847)
.+... .++++..||+|+-+|+|..+.++.+++.|.+.|.+|+++.....++++++.|+.|++|++.......+. ...
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 99765 567788999999999999999999999999999999999999999999999999999999754432211 111
Q ss_pred CceEEEEEecC--CCEEEEEcCCCcEEEEcCCc
Q 003106 766 SFCCWCVNAMN--RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 766 ~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~ 796 (847)
-....|+..+. ...+..+...+.+++||...
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 12244544443 33455666667799998653
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=5.8e-17 Score=167.82 Aligned_cols=254 Identities=12% Similarity=0.126 Sum_probs=184.7
Q ss_pred cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC
Q 003106 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 650 (847)
Q Consensus 571 ~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg 650 (847)
++.++|||+...++...+. +..++-..+++-....-+++.|.+|+.|-+... ++.++. ....+..|.-+..+
T Consensus 88 DG~VkiWnlsqR~~~~~f~---AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~----p~~til-g~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFK---AHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP----PLHTIL-GKSVYLGIDHHRKN 159 (433)
T ss_pred CceEEEEehhhhhhhheee---cccCceeeEEecccceEEecCCcceeeeeccCC----cceeee-cccccccccccccc
Confidence 3445999998876655433 222222222222222227888999999998753 444444 34567777777778
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++|||.+ |-|||.....++..+.-..+.|.+|.|+|... .|++|+.|+.|.|||+++ ..++.... -.-.-+.|
T Consensus 160 ~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi-~~mRTN~I 235 (433)
T KOG0268|consen 160 SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVI-LTMRTNTI 235 (433)
T ss_pred ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceee-eeccccce
Confidence 899999864 99999998899999988889999999999865 567777999999999998 56655543 23446779
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGW 807 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~ 807 (847)
+|+|. ...|++++.|..++.||++.- ..+.++..|...|..+++.+. ..+.+++-|+.|+||.....+..-.....
T Consensus 236 swnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk- 313 (433)
T KOG0268|consen 236 CWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK- 313 (433)
T ss_pred ecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-
Confidence 99995 556779999999999999974 578888999999999998764 46789999999999986543321111110
Q ss_pred cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 ~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+.++.|+ ++..+|++||.|+.||+|+.
T Consensus 314 -RMq~V~~Vk~S-----~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 314 -RMQHVFCVKYS-----MDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred -hhheeeEEEEe-----ccccEEEecCCCcceeeeec
Confidence 12233444455 47889999999999999985
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=8.8e-15 Score=158.04 Aligned_cols=252 Identities=12% Similarity=0.089 Sum_probs=162.4
Q ss_pred CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc
Q 003106 573 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 647 (847)
Q Consensus 573 ~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs 647 (847)
...+||+.+++....+... .. ...+.+.+++ ++..++.+++||+.++ +.+..+..+.. +..++|+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~---~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~-~~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVG---QR---PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD-PELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECC---CC---CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC-ccEEEEC
Confidence 3478998887654433211 10 1112223333 2456789999999876 33334444433 5788999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCceEEEeccCCCC
Q 003106 648 SDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSAS 725 (847)
Q Consensus 648 pdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-~V~iWD~~~~~~~~~~~~~h~~~ 725 (847)
++++.|+++ +.|+.|++||+.+.+.+..+.. ...+.+++|+|++++|++++.++ .+++||.++ ...+..+. ....
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVL-VDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEE-cCCC
Confidence 999977655 5689999999998888777753 33478999999999999888765 577889987 44444432 2345
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-------eEEEEEecC-CCEEE-EEcCCCcEEEEcCCc
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-------CCWCVNAMN-RPCLW-DKLDAGDIQISDSLF 796 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-------~v~~~~~~~-~~~l~-~~~~~g~i~i~d~~~ 796 (847)
+.+++|++++..+++++..++.|++||+++++++..+..+.. ....+.+.. ...++ ....++.+.+||...
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 678999999997777777799999999999988776653211 112333333 33333 345566799998653
Q ss_pred ccceeeecccccCCCCccccccccccccCCCcEEEEE-eCCCeEEEEEccC
Q 003106 797 INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGDSSLSSFIAGT 846 (847)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~DG~V~vW~~gt 846 (847)
... ..... ... ..+.+.+.+ ++.+|+++ ..+|.|+|||+.+
T Consensus 239 ~~~--~~~~~--~~~----~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 239 YEV--LDYLL--VGQ----RVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CcE--EEEEE--eCC----CcceEEECC-CCCEEEEEcCCCCeEEEEECCC
Confidence 222 11111 111 233444445 56666665 5699999999865
No 133
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=6.6e-16 Score=158.38 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=165.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~ 685 (847)
.++..|.|+|.|+.++ +....+.+|...|+.|.|+|+ ..+|++||.|..||+|++.+..++..| .+|.+.|.+
T Consensus 110 ~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 5678899999999977 677889999999999999995 469999999999999999999998876 579999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCc------------------------e---EEEeccCCCCeEEEEEecCCCeE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGY------------------------S---LRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~------------------------~---~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
|+|+.+|.+|++|+.|..|++|++..+.. . ..+-.-|...|-|+.|--+ +
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd---~ 263 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD---F 263 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh---h
Confidence 99999999999999999999999984210 0 0122347778888888743 6
Q ss_pred EEEEeCCCcEEEEEC-CCCce-------------EEEEeeCCceEEEEEecC---CCEEEEEcCCCcEEEEcCCccccee
Q 003106 739 ICSCDGDGEIRYWSI-NNGSC-------------TRVFKVESFCCWCVNAMN---RPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~-~~~~~-------------~~~~~~~~~~v~~~~~~~---~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
+++-+.++.|..|.. +-++. +..+......+|.+.+.- ...+..+...|.+.+||.......
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~- 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP- 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence 668888999999988 32222 223333444455544332 245678889999999997654443
Q ss_pred eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 802 FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 802 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+..........+.+.. +...++.+|+..+.|++|.-||.-
T Consensus 343 ~~ttl~~s~~~~tVRQ~---sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQT---SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeee---eecccCcEEEEEeCCCcEEEEEee
Confidence 22211111112222211 123367889999999999999864
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.8e-16 Score=175.89 Aligned_cols=225 Identities=16% Similarity=0.194 Sum_probs=175.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++|+..... ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+.++..-..+...+-++.+++|+
T Consensus 30 tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~ 105 (933)
T KOG1274|consen 30 TCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS 105 (933)
T ss_pred EecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEe
Confidence 68889999999987652 2333344478888888874 5599999999999999999887766666777899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---- 765 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---- 765 (847)
-+|+++|.||+|-.|+|-++.+ ......+.+|.+.|.+|.|+|.+. +||+.+.||.|+|||+.++.+.+++..-
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n 183 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN 183 (933)
T ss_pred cCCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc
Confidence 9999999999999999999998 677889999999999999999987 7778889999999999999887776532
Q ss_pred ----CceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 766 ----SFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 766 ----~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
...+..+++... ..+.....++.|.+|+...-......+... ....+....|+ +| +.||++++-||.|.
T Consensus 184 ~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~ws----Pn-G~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWS----PN-GKYIAASTLDGQIL 257 (933)
T ss_pred cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEc----CC-CcEEeeeccCCcEE
Confidence 233444455554 677788889999998855332222222222 22224455555 64 99999999999999
Q ss_pred EEEccC
Q 003106 841 SFIAGT 846 (847)
Q Consensus 841 vW~~gt 846 (847)
||++.|
T Consensus 258 vWnv~t 263 (933)
T KOG1274|consen 258 VWNVDT 263 (933)
T ss_pred EEeccc
Confidence 999873
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=8.3e-16 Score=163.70 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=190.6
Q ss_pred CCCCCCcceEEEecCCC-eEeecC----CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC-----CCCCCCcEE
Q 003106 550 HSGTTSKPLMMFGTDGA-GTLTSP----SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD-----TDPRDAGGR 618 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~-~~~~~~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~-----t~~~d~~v~ 618 (847)
......+.++.|.|-.. .+++.+ .+.+||+.+.+ ++.+.+.....+...|. +.+.+.. +.+.||+||
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~--~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE--KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC--CccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 34455778899998765 555443 34899996322 22222222222222222 2233332 788999999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCCCC-EEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMP-RLA 696 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~~~-~La 696 (847)
+-|+++. .++++..+......+.++.|+.+...++.|..=|...+||.++... ...+.-|...|.+|+++|-.. +||
T Consensus 261 ~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999988 6677777766677788999999888888888878999999996554 566778999999999999765 679
Q ss_pred EEeCCCcEEEEECCCCC--c-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC----CCceEEEEeeCC---
Q 003106 697 TSSFDKTVRVWDADNPG--Y-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN----NGSCTRVFKVES--- 766 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~--~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~----~~~~~~~~~~~~--- 766 (847)
|++.|++++|||+|... . .+.....|...|.+..|+|.+..+ +|.+.|.+|||||.. ......++....
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccCCccceeeccCccc
Confidence 99999999999998632 1 123334699999999999999885 577889999999984 223333332211
Q ss_pred ceEE---EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 767 FCCW---CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 767 ~~v~---~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.++. .....+...++.+.--..|.+++..... ..+.+.......+++ -..+++.+..+++.|+.-|.|.||.
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q--~v~el~~P~~~tI~~---vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ--MVCELHDPESSTIPS---VNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCE--EeeeccCcccccccc---ceeecccccceeccCCccceEEEEe
Confidence 1221 1222355677778888889998865332 223222111212222 2445675555677778889999986
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
.
T Consensus 494 ~ 494 (498)
T KOG4328|consen 494 N 494 (498)
T ss_pred c
Confidence 4
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=4.3e-16 Score=166.56 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=161.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~f 688 (847)
+++..++|+|||+... .+.+.+++|.+.|+|+.++-...+||+++..|.|.|..+.++....+|... ...|.-|+|
T Consensus 96 sgG~~~~Vkiwdl~~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY 172 (673)
T ss_pred ccCcCceeeehhhHHH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec
Confidence 6788999999999854 466778999999999999999999999999999999999998887788654 345669999
Q ss_pred cCCCCE-EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 689 SPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 689 sp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
++..++ |.+++++|.|.+||+..........+.|..+...|||+|..+.||++.+.|..|.+||++..+....+.....
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P 252 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP 252 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC
Confidence 998875 5778999999999998755555566789999999999999999999999999999999998777666654433
Q ss_pred eEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccc
Q 003106 768 CCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK 819 (847)
Q Consensus 768 ~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~ 819 (847)
...+++ .++..+..|...|.|+.||.+.....+.... .+...++...|-
T Consensus 253 -lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~vafq 302 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVAFQ 302 (673)
T ss_pred -cceeeecCCceEEEeecCCceEEEEecccCCCCceEee--ecccceeEEEee
Confidence 344444 4566778899999999999775544433322 223335555554
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.8e-17 Score=189.39 Aligned_cols=228 Identities=14% Similarity=0.161 Sum_probs=174.2
Q ss_pred CCCCCCcEEEEeccC---CceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCe
Q 003106 610 TDPRDAGGRGMDVSQ---GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~---~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I 683 (847)
.+..||.|.+||... +..+..+.+...|++.|..+.|++... +||+|+.||.|.|||+.+.+.-.++. ...+.|
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI 164 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI 164 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence 677899999999776 446667788899999999999999655 99999999999999998755544442 245779
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCC---cEEEEECCCC-
Q 003106 684 TDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDG---EIRYWSINNG- 756 (847)
Q Consensus 684 ~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~- 756 (847)
.||+|+..-. .|++++.+|++.|||+|. .+.+..+..|.. .+..|.|||++..-|++++.|. .|.+||+|.-
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 9999998644 678899999999999998 555666654443 4788999999887776776653 6999999964
Q ss_pred ceEEEEeeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 757 SCTRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
..++++.+|...|.++.+.. ...+++...|+.|.+|+... .+++..+.. ...- ++++.+.+.+..+|++++
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~-~~nW----~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPA-QGNW----CFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCC-CCcc----eeeeeecCCCcchhhhhe
Confidence 57788899999999988764 35677888999999999663 333333322 1111 223334455667899999
Q ss_pred CCCeEEEEEcc
Q 003106 835 GDSSLSSFIAG 845 (847)
Q Consensus 835 ~DG~V~vW~~g 845 (847)
-||.|.||.+.
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 99999999763
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2e-15 Score=160.97 Aligned_cols=289 Identities=12% Similarity=0.143 Sum_probs=205.3
Q ss_pred cccCCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccc-cccCCCCCceEEeeecCC-----CCCCCCc
Q 003106 546 PALPHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRL-VEDGSLDDNVESFLSHDD-----TDPRDAG 616 (847)
Q Consensus 546 ~~~~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~-~~~g~~d~~v~~~~s~d~-----t~~~d~~ 616 (847)
+...+.....+.++.|.|....+++++-+ +||-++. +....+..+ +....+ -++.+.+++ ++++...
T Consensus 206 aNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi---~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 206 ANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPI---QKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred cccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecC-ccChhheeeeeccCcc---ceeeecCCCceEEEecccceE
Confidence 34456666788999999999999998766 6776643 222222221 111111 122233333 5788889
Q ss_pred EEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 617 GRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
...||+.+. .+..+..+.++. ..+....+++++++|+..|..|.|.|....+++.+.+++ -.+.|.+++|+.+++.|
T Consensus 282 ~ysyDle~a-k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETA-KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeecccc-ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEE
Confidence 999999988 555566666665 456788899999999999999999999999999998886 45779999999999999
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCC------CceEEEEeeCCce
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSCTRVFKVESFC 768 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------~~~~~~~~~~~~~ 768 (847)
++++.+|.|.+||++. ..+++.+....+ .-+++|.+.++. +|++|+..|.|.|||..+ .++++.+..-...
T Consensus 360 ~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 9999999999999998 578888753222 235677778887 788999999999999764 3566666666677
Q ss_pred EEEEEecCCCEEEEEcCCC---cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAG---DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|..+.|..+..|.+.++.. .+++.... ...+|..+.... .....+-++++.+ .+.+++.|..+|.|.+|++.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvP--S~TVFsNfP~~n--~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVP--SCTVFSNFPTSN--TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEecc--ceeeeccCCCCC--CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 8888888877776665543 34444322 233344433321 1112222233334 68999999999999999999
Q ss_pred CC
Q 003106 846 TY 847 (847)
Q Consensus 846 ty 847 (847)
+|
T Consensus 513 hy 514 (514)
T KOG2055|consen 513 HY 514 (514)
T ss_pred cC
Confidence 87
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=3.5e-16 Score=172.17 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=158.5
Q ss_pred CCCCCcEEEEeccCCceee----EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFK----EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~I~ 684 (847)
+..+|.|.++|.... .++ .+.....|...|.++.|-|....|++++.|.+|++||++..+++.. +.+|...|.
T Consensus 70 adE~G~i~l~dt~~~-~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~Svk 148 (720)
T KOG0321|consen 70 ADEDGGIILFDTKSI-VFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVK 148 (720)
T ss_pred ecCCCceeeecchhh-hcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccc
Confidence 345677778887654 222 1345568999999999999777899999999999999999888777 889999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCc--------------------------eEEEeccCCCCeEE---EEEecC
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGY--------------------------SLRTFMGHSASVMS---LDFHPN 734 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~ 734 (847)
+++|.|+.. .|++|+.||.|.|||++..+. -+...+.+...|.+ +.+..|
T Consensus 149 S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD 228 (720)
T KOG0321|consen 149 SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD 228 (720)
T ss_pred hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec
Confidence 999999765 778999999999999985321 01122234444444 444455
Q ss_pred CCeEEEEEeC-CCcEEEEECCCCceEEEE--------eeC---CceEEEEEec-CCCEEEEEcCCCcEEEEcCCccccee
Q 003106 735 KDDLICSCDG-DGEIRYWSINNGSCTRVF--------KVE---SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 735 g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~--------~~~---~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
.. .|++++. |+.|+|||++...+.... ..+ ...+.++..+ .+.++++.+.|+.|+.|+........
T Consensus 229 e~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 229 ES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred cc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc
Confidence 44 5567776 999999999976443322 122 2234444433 45788888889999999965433322
Q ss_pred e-ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 802 F-CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 802 ~-~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
. +..+... ...+.-.+...++.+|++|+.|+.+++|.+.+
T Consensus 308 ~~~~sg~~~-----~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 308 VAEFSGKLN-----SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred hhhccCccc-----ceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 2 2222211 11222334556789999999999999998753
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.1e-15 Score=151.45 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=168.8
Q ss_pred CCCCCCcEEEEeccC-CceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC--C-------CceeEEEc
Q 003106 610 TDPRDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD--T-------LKSKTNLE 677 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~--~-------~~~~~~l~ 677 (847)
+++.|.+++|||..+ ..++.+....+.|.+.|..|.|.+ -|..||+|+.|++|+||.-. . .....++.
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV 109 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence 788999999999544 347888899999999999999987 68999999999999999752 1 12345566
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCce-----EEEe-------ccCCCCeEEEEEecCC--CeEEEE
Q 003106 678 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYS-----LRTF-------MGHSASVMSLDFHPNK--DDLICS 741 (847)
Q Consensus 678 ~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~-----~~~~-------~~h~~~V~sl~fsp~g--~~ll~s 741 (847)
.....|++|.|.|. |-.||+++.||+||||+.-.+... ..++ ..+.....||.|++.. +-+|+.
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 77889999999996 668899999999999998764321 1111 2466778999999752 336666
Q ss_pred EeCC-----CcEEEEECCCC----ceEEEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCCcccceeee----
Q 003106 742 CDGD-----GEIRYWSINNG----SCTRVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSLFINANIFC---- 803 (847)
Q Consensus 742 ~s~D-----g~V~iWD~~~~----~~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~~~~~~~~~---- 803 (847)
|+.+ +.+.||....+ ..+.++..+...|+.+++.+. ..+..++.+| |+||........++.
T Consensus 190 gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~ 268 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL 268 (361)
T ss_pred EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence 6644 48999977543 244566788888998887543 3466677777 999885432211110
Q ss_pred -c-----c---cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 804 -G-----L---GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 804 -~-----~---~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
. + ...........+|.+.+.- .+.+|.+.+.||.||+|+..|
T Consensus 269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 269 APDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhhh
Confidence 0 0 0112333455677777665 578899999999999998754
No 141
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4e-16 Score=160.90 Aligned_cols=143 Identities=18% Similarity=0.286 Sum_probs=116.5
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeE--EEccCC-CCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~-~~I~~ 685 (847)
+...+.|++||..++ ..+..+++|...++.++|.. ....+.+|+.||+|++||+++..... .+..+. .+..|
T Consensus 46 ~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred EecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence 345688999999876 56777888999999999987 46789999999999999999754433 344555 46778
Q ss_pred EEEcCCCCEEEEEe----CCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 686 VRFSPSMPRLATSS----FDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 686 v~fsp~~~~Lasgs----~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++..-.+..+++|. .|-.|.+||+|.....++.+ ..|.+.|++|+|+|...++|+||+.||.|.|||++..
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 88877777888875 37789999999855545444 6799999999999999999999999999999999753
No 142
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=1.5e-15 Score=151.35 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=173.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+++.|+++++|+++.. .+......++|.+.|-.++|+| ...+|++++.|++|++||++.++++..+......| -+.|
T Consensus 37 sgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~w 114 (313)
T KOG1407|consen 37 SGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITW 114 (313)
T ss_pred ecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEE
Confidence 6788999999999987 5555667789999999999998 66799999999999999999999998886555544 5789
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|+|.+++.++.|..|.+.|+++ ...+... ...-.+..++|+.++..+|++ ...|+|.|.....-+.+..++.|...
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~-~~~~~~~-~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDART-YKIVNEE-QFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecc-cceeehh-cccceeeeeeecCCCCEEEEe-cCCceEEEEeccccccccccccCCcc
Confidence 99999999999999999999998 4544443 245568889999776655544 44799999999999999999999999
Q ss_pred EEEEEecCCC-EEEEEcCCCcEEEEcCCcc-cceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 769 CWCVNAMNRP-CLWDKLDAGDIQISDSLFI-NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 769 v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.|+.++... ++..|+.+..+.+||.... ....+.+..| +.+..+ -.+++.+|++|+.|-.|-|=++.|
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw------pVRTlS---FS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW------PVRTLS---FSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC------ceEEEE---eccCcceeeccCccceEEeEeccc
Confidence 9999998765 4567888888999995432 2222222221 111111 235789999999999998766544
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=2.7e-15 Score=164.17 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=152.9
Q ss_pred CCCCCCcEEEEeccCCcee--eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGFSF--KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h 679 (847)
..+..|.|.|+++.....+ ..+-.+ -....|++++|.| |...||++++||.|+||.+..+ .+...++.|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 3455788999998763211 111122 1356799999999 8889999999999999998743 455678899
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-
Q 003106 680 SSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS- 757 (847)
Q Consensus 680 ~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~- 757 (847)
...|++|+|+|- .+.|+++++|-+|+|||+.+ ......+.+|.+.|.+++|+|+|. .+++.+.||+|+||+.++++
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCC
Confidence 999999999996 46889999999999999998 677788999999999999999998 56799999999999998764
Q ss_pred eEEEEeeC--CceEEEE-EecCCCEEEEEc---CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 758 CTRVFKVE--SFCCWCV-NAMNRPCLWDKL---DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 758 ~~~~~~~~--~~~v~~~-~~~~~~~l~~~~---~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
.+..-++. ......+ ..++...+..+. +.+.|.+|+........+.....-.........| ......+|+
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~Y----D~Ds~~lfl 830 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHY----DYDSNVLFL 830 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccc----cCCCceEEE
Confidence 22222211 1111111 112333333332 2234555653322211111111100111111112 233456899
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
+|-+|..|.+|++-+
T Consensus 831 tGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIY 845 (1012)
T ss_pred ecCCCceEEEEEecC
Confidence 999999999998743
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.8e-15 Score=151.67 Aligned_cols=210 Identities=18% Similarity=0.252 Sum_probs=145.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWD 708 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD 708 (847)
.+|.+-|.|+.|...|+++|||+.|++|+|||.++ ..+....+.|.+.|..|.|.+- |..+|+|+.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999653 3566678899999999999653 88999999999999997
Q ss_pred CCCC--------CceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCc------eEEEEe-------eCC
Q 003106 709 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGS------CTRVFK-------VES 766 (847)
Q Consensus 709 ~~~~--------~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~------~~~~~~-------~~~ 766 (847)
-... -..+.++....+.|+.|.|.|.. ...+++++.||+||||+.-.-- ..+.+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 6210 12345566678899999999973 3457899999999999875432 222222 233
Q ss_pred ceEEEEEec----CCCEEEEEcCC-----CcEEEEcCCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 767 FCCWCVNAM----NRPCLWDKLDA-----GDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 767 ~~v~~~~~~----~~~~l~~~~~~-----g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
....|+.+. ....+..++.+ +.+.||........... .....+.+.++...|.+.... .-.+|++++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-SYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC-ceeeEEEeecC
Confidence 344555543 33455555554 35777764332212111 111123444555666654433 34679999999
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
| |+||+++.
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999873
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=2.9e-14 Score=153.96 Aligned_cols=226 Identities=12% Similarity=0.038 Sum_probs=146.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..|+.+++||+.++ +.+..+..+. .+.+++|++|++.| ++++.|+.|++||+.+++.+..+..+.. +..++|+
T Consensus 7 ~~~d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~ 81 (300)
T TIGR03866 7 NEKDNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALH 81 (300)
T ss_pred ecCCCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEEC
Confidence 356789999999876 3555565554 47789999999976 5667889999999999888877765544 5788999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+++.|+++ +.|+.|++||+++ ...+..+.. ...+.+++|+|++..++ +++.+ ..+.+||.++++.+..+.....
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIET-RKVLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-CCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence 999977655 5689999999997 556666642 34578899999998655 55544 4677889998887665543322
Q ss_pred eEEEEEec-CCCEEEEE-cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE-EEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDK-LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC-LYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-l~sGs~DG~V~vW~~ 844 (847)
..++.+. +...++.. ..++.+.+|+..........................+.+.+ ++.+ +++.+.++.|.+|++
T Consensus 159 -~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 159 -PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 3344444 33445444 45888999996533211111111000000000111122233 4554 444566778999998
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
.+
T Consensus 237 ~~ 238 (300)
T TIGR03866 237 KT 238 (300)
T ss_pred CC
Confidence 64
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=155.00 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=156.9
Q ss_pred EEEecCCCeEeecCCC---eEEeCCCCchhhccc---------cccccCCCCCceEEeeecCC----------CCCCCCc
Q 003106 559 MMFGTDGAGTLTSPSN---QLWDDKDLELRADMD---------RLVEDGSLDDNVESFLSHDD----------TDPRDAG 616 (847)
Q Consensus 559 v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~---------~~~~~g~~d~~v~~~~s~d~----------t~~~d~~ 616 (847)
..|+|||.-+++...+ ++|++..-...+..+ .+-.........++|++.-. ...++.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 4799999999887766 778874322222110 00001111112345554322 5778999
Q ss_pred EEEEeccCCceeeEeEEeecCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcee--EEEc-----cCCCCeEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKV---ICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSK--TNLE-----EHSSLITD 685 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V---~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~--~~l~-----~h~~~I~~ 685 (847)
|++||..+| .++.......|-+.+ .|++|+|||..|++| ....|+|||+ +.|... .... +..+.|.|
T Consensus 135 Ih~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 135 IHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred eeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 999999998 555544445565554 489999999999987 5679999998 444322 2222 23678999
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEe
Q 003106 686 VRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 686 v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
++|+|-. +.+++|+...++-||.-.. ..++..+.+|.+.|+.+.|+++|.+++.-+-.|..|.+||+|.- ..+..+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999965 4889999999988887776 67788888999999999999999988744445789999999964 3444554
Q ss_pred eCCc-eEEEEEe---cCCCEEEEEcCCCcEEEEcCC
Q 003106 764 VESF-CCWCVNA---MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 764 ~~~~-~v~~~~~---~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.|.. .--.+.| .....+..+..+|.|.+||..
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 4433 1111222 233455566677777777754
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=1e-15 Score=170.04 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=162.2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.++..+.+|...|+||+.+|++++||+++... .|+||+..+...+..+.+|.-.|+.|+|+||+++|++.|.|.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 456677899999999999999999999998643 589999999888889999999999999999999999999999
Q ss_pred cEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--ceEEEEe--eCCceEEEEEec
Q 003106 703 TVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFK--VESFCCWCVNAM 775 (847)
Q Consensus 703 ~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~--~~~~~~~--~~~~~v~~~~~~ 775 (847)
++.+|....... .....+.|+..|++++|+|++.+ |+|+|+|.+|+||..... +++..+. .....|+.+++.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 999998854222 22336789999999999999875 779999999999999877 5554432 345556666543
Q ss_pred ------CCCEEEEEcCCCcEEEEcCCccccee------eecc---cccCCCCcccccccccc-----ccCCCcEEEEEeC
Q 003106 776 ------NRPCLWDKLDAGDIQISDSLFINANI------FCGL---GWYGSDEIPAPSWKVSC-----RSCRECCLYTGCG 835 (847)
Q Consensus 776 ------~~~~l~~~~~~g~i~i~d~~~~~~~~------~~~~---~~~~~~~~~~~~w~~~~-----~~~~~~~l~sGs~ 835 (847)
....+..|.+.|.|.+|.....+... .... ...+...+....|...| .......|++|+.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 23467899999999999844211110 0000 01123334555676554 1112345899999
Q ss_pred CCeEEEEEcc
Q 003106 836 DSSLSSFIAG 845 (847)
Q Consensus 836 DG~V~vW~~g 845 (847)
|-++||+++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999875
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=152.25 Aligned_cols=195 Identities=18% Similarity=0.248 Sum_probs=144.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|+|++|+++|+.|+|++.|..|++||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 66777775
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-C---ce-EEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-S---FC-CWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~---~~-v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
..++|+.+.|+|...+.++++--+..-.+-++..++ -..+... . .. ..+..++ ....+++|...|.+.+++.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 678999999999877777666556556666665532 1112111 1 11 1112233 4568899999999999986
Q ss_pred CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
........++.. ....+.. +. .+..+.+|+..+.|.+||+|+..
T Consensus 183 ~t~e~vas~rit--s~~~IK~----I~-~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRIT--SVQAIKQ----II-VSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeec--hheeeeE----EE-EeccCcEEEEecCCceEEEEehh
Confidence 644322222211 1111111 11 12357899999999999999864
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.1e-15 Score=166.77 Aligned_cols=129 Identities=22% Similarity=0.398 Sum_probs=110.6
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
....++..|.+.|++++|++....|++|+.||+|++|++. ..+++.+|++|.++|.||++.+++.++++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3344788899999999999999999999999999999983 24678899999999999999999999999999
Q ss_pred CCcEEEEECCC---------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 701 DKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 701 Dg~V~iWD~~~---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
||+|++|++.. +.....++.||.+.|+.++++....+| ++|+.||+||.|+......
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL-LSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce-eeecCCceEEeeccCCcCc
Confidence 99999995531 123456788999999999999987765 5999999999999865543
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=1.8e-14 Score=160.29 Aligned_cols=293 Identities=13% Similarity=0.147 Sum_probs=209.8
Q ss_pred CCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCC--chhhccccccccC-CCCCce-EEeeecCC---CCCCCCcEE
Q 003106 549 PHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDL--ELRADMDRLVEDG-SLDDNV-ESFLSHDD---TDPRDAGGR 618 (847)
Q Consensus 549 ~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~--~~~~~~~~~~~~g-~~d~~v-~~~~s~d~---t~~~d~~v~ 618 (847)
-..|..-+.++-|.|++..+++++.+ -+|..++. -.+.. .++.+.+ +..+-. +.|..+.. +-++.|..+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~-vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV-VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE-EEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34555667899999999888887776 57877654 22222 2222222 121222 23333322 556778899
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------------------C---------
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------------------T--------- 669 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------------------~--------- 669 (847)
+|.......+.....+.+|.+.|++++|+|.|++|++.|.|-+-|||-.- .
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 99955554667777889999999999999999999999999887775211 0
Q ss_pred ------CceeEE--------------------------------------------------------------------
Q 003106 670 ------LKSKTN-------------------------------------------------------------------- 675 (847)
Q Consensus 670 ------~~~~~~-------------------------------------------------------------------- 675 (847)
.+.++.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 001111
Q ss_pred -------------------EccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEeccCCCCeEEEEE
Q 003106 676 -------------------LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (847)
Q Consensus 676 -------------------l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~h~~~V~sl~f 731 (847)
+.+|...|+|++.+|++++|||++.. ..|+||+..+ -..+..+.+|.-.|+.|+|
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEEEEE
Confidence 23588899999999999999999853 3599999988 5667789999999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCc----eEEEEeeCCceEEEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeecc-
Q 003106 732 HPNKDDLICSCDGDGEIRYWSINNGS----CTRVFKVESFCCWCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGL- 805 (847)
Q Consensus 732 sp~g~~ll~s~s~Dg~V~iWD~~~~~----~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~- 805 (847)
+|||++|| +.+.|+++.+|...... .....+.|...|+.+++.+... +++++.|+.+++|..........+.+
T Consensus 581 Spdg~~LL-svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 581 SPDGRYLL-SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred CCCCcEEE-EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 99998555 99999999999885432 2233678999999998776554 88999999999998654433333332
Q ss_pred cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 806 GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 806 ~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+..++.+.|....+.....++++|-..|.|.+|..
T Consensus 660 ~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 660 CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 223455566666665555655668999999999999984
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8.3e-15 Score=149.64 Aligned_cols=193 Identities=14% Similarity=0.185 Sum_probs=146.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
..+.|.+|.|++.+..|+++++||++++||+........+ .|..+|.+++|.+ ...+++|+.||.|+++|+.+ +. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~-~~-~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT-GN-E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecC-Cc-c
Confidence 4678999999999899999999999999999977665555 5899999999997 45799999999999999997 33 3
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
..+-.|...|.||.+.+... .+++|++|++|++||.+...++..+.... .|.|++. .+..+..++.+..+.+||.+.
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v-~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV-SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCc-eEEEEec-cCCEEEEeecCceEEEEEccc
Confidence 45556999999999998755 45599999999999999866666665544 7888874 455777888999999999775
Q ss_pred ccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 797 INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.......+.. ......-++.+.+ +..-+++++-||.|.|=
T Consensus 165 ~~~~~q~reS-----~lkyqtR~v~~~p-n~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 165 LDEPFQRRES-----SLKYQTRCVALVP-NGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccchhhhccc-----cceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence 4333211111 0111112234445 45667889999988763
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=4.2e-13 Score=148.99 Aligned_cols=282 Identities=27% Similarity=0.344 Sum_probs=194.1
Q ss_pred CCCCCcceEEEecCCCeEeecC---CCeEEeCCCCc-hhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLE-LRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~-~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vw 620 (847)
.+......+.+.+++..++..+ ...+|+..... ....+..... ..+ ..+... ..+. ....++.+++|
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSV-SKLALS-SPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-Cce-eeEEEE-CCCcceEEeccCCCCccEEEE
Confidence 3444566778888888877655 34789988775 2222111100 001 111111 1111 34458899999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATS 698 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasg 698 (847)
|+.. .......+..|...|.+++|+++++.+++++. |+.|++|++..+..+..+.+|...|.+++|+|++. .++++
T Consensus 140 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9986 13677788899999999999999999999886 99999999999899999999999999999999998 55555
Q ss_pred eCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEEeeCCceEEEEEecC
Q 003106 699 SFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~~~~~~~v~~~~~~~ 776 (847)
+.|+.|++||... +..+. .+.+|...+ ...|++++. ++++++.|+.+++||++.... +..+..|...+.++.+.+
T Consensus 218 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 8999999999986 66666 688888876 448999984 566899999999999997765 555556677788777665
Q ss_pred -CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE-eCCCeEEEEEccC
Q 003106 777 -RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGDSSLSSFIAGT 846 (847)
Q Consensus 777 -~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~DG~V~vW~~gt 846 (847)
...+..+..++.+.+|+........... ...+.. .+..+.+ ..+...++.+ ..|+.+++|++..
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEG----PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCC----ceEEEEE-CCCCCEEEEeecCCCcEEeeecCC
Confidence 4555556777778999644322211111 011111 2222333 2222344444 7889999998754
No 153
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.64 E-value=1e-13 Score=149.07 Aligned_cols=270 Identities=18% Similarity=0.200 Sum_probs=194.5
Q ss_pred ceEEEecCCCeEee-cC--CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCCceee
Q 003106 557 PLMMFGTDGAGTLT-SP--SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 557 ~~v~~s~dG~~~~~-~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~~~~~ 629 (847)
....|.|-+..++. -+ ...+|+.+.+.+.+..+-+... .. +.|. +-+..++ ++..+|.|.||+..+. +
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~-ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~---~ 278 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKR-EK-KFVLCVTFLENGDVITGDSGGNILIWSKGTN---R 278 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccc-cc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCc---e
Confidence 45577776665433 33 3378999988776654433222 22 3333 3344444 8899999999999655 4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEE-----------------------
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTN----------------------- 675 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------~~~~----------------------- 675 (847)
.......|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+ .+++
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 4444559999999999999987665 9999999999832100 1111
Q ss_pred ------EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 676 ------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 676 ------l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
..+|.+..+.++.+|+.+.|++++.|+.|++|+ + .+.+.+ +....++.|++|+|.| .++.|...|...
T Consensus 358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWF 431 (626)
T ss_pred CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEE-EEecCceeEeeccCcc--eEEEeeccceEE
Confidence 235788889999999999999999999999999 2 222222 2345789999999998 677999999999
Q ss_pred EEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 750 YWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
|.|.++...+..-. ....+.++.+.. ...+..++.++.|++|.... +...+...+......++...|+. +..
T Consensus 432 V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-~g~~y~r~~k~~gs~ithLDwS~-----Ds~ 504 (626)
T KOG2106|consen 432 VLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-NGRKYSRVGKCSGSPITHLDWSS-----DSQ 504 (626)
T ss_pred EEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECC-CCcEEEEeeeecCceeEEeeecC-----CCc
Confidence 99999955544444 477888888774 45777888999999997553 33344444544447777777873 688
Q ss_pred EEEEEeCCCeEEEEEcc
Q 003106 829 CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~g 845 (847)
+|.+-+.|-.|.+|+.+
T Consensus 505 ~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPS 521 (626)
T ss_pred eEEeccCceEEEEEccc
Confidence 99999999999999653
No 154
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.63 E-value=1.3e-14 Score=160.77 Aligned_cols=235 Identities=17% Similarity=0.273 Sum_probs=183.5
Q ss_pred CCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC-------CCCCCCcEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-------TDPRDAGGRG 619 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-------t~~~d~~v~v 619 (847)
.+.....+++.+|||.+++++. ..+++|+...+..-.++. ++..|.+. ++... ++++|..|+|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA------HesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA------HESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec------ccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 3445567899999999998864 449999987665443322 23233332 23222 7899999999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEccC-----CCCeEEEEEcCCC
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEH-----SSLITDVRFSPSM 692 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-----~~~I~~v~fsp~~ 692 (847)
+|+... +..+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.........|..| ...+++++..|+.
T Consensus 531 ~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 531 YDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred Eecccc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 999764 56788999999999999999877 78999999988765443322222223222 3568999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEecc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++++++.|..|+|||+.+ ++.++.|++ |.+....|...|.|-++ ++...|++|.|+|+-+|+|+....+|...|
T Consensus 609 k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~-atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYL-ATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred ceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEE-EEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 9999999999999999998 888888875 66778889999998755 466669999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNR-PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~-~~l~~~~~~g~i~i~d~~ 795 (847)
+.+.|.++ ..+...+.||+|.+|...
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECc
Confidence 99988765 457899999999999843
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.7e-15 Score=177.25 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=176.9
Q ss_pred CcceEEEecCCCe---EeecC-C---CeEEeCCCCchhhccccccccCCCCCceEEeeec-C-----CCCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAG---TLTSP-S---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-D-----DTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~---~~~~~-~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~-d-----~t~~~d~~v~vwd 621 (847)
.-.-++|++.|.. +++++ . +-|||.........+..+.....+.+.|...... . .+|+.+|.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 3456788877776 34433 3 3789987642222222222333344444432111 1 1788999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCC--CeEEEEEcCCCC-EEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMP-RLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~--~I~~v~fsp~~~-~Las 697 (847)
+.+-.+-.... -....+.|.||+|+. ....|++++.+|++.|||++..+.+..+..|.. .+..|.|+|+.. .|++
T Consensus 146 lnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 146 LNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred cCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 98742111111 123567899999997 567899999999999999998888888876655 477899999864 6666
Q ss_pred EeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 698 SSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 698 gs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
++.|. .|.+||+|.....++++.+|...|.+|+|++.+.++++||+.|+.|.+|+.++++.+..+.....++..+.+
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 66544 599999998888899999999999999999998889999999999999999999999999998888888887
Q ss_pred cCCC--EEEEEcCCCcEEEEcCC
Q 003106 775 MNRP--CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 775 ~~~~--~l~~~~~~g~i~i~d~~ 795 (847)
..+. .+...+-+|.|.|+...
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCcchhhhheeccceeeeeee
Confidence 7543 45566678888887743
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=147.57 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=150.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-----
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT----- 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~----- 684 (847)
.+..+|.+-+||+.+. ...+.+.+|..+|+|++|++||++|+|+|.|..|++||+..+.+++.+. ..++|+
T Consensus 40 vGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~h 115 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWH 115 (405)
T ss_pred eeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeec
Confidence 6788999999999854 5677789999999999999999999999999999999999887766643 112222
Q ss_pred ------------------------------------------EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC
Q 003106 685 ------------------------------------------DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722 (847)
Q Consensus 685 ------------------------------------------~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h 722 (847)
+..|.+.|++|++|...|.+.|+|..+ .+++..++-.
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch-heeeeeeeec
Confidence 222555789999999999999999998 6778777655
Q ss_pred C-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------CceE--EEEe--eCCceEEEEEecCC-CEEEEEc-CCCc
Q 003106 723 S-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCT--RVFK--VESFCCWCVNAMNR-PCLWDKL-DAGD 788 (847)
Q Consensus 723 ~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-------~~~~--~~~~--~~~~~v~~~~~~~~-~~l~~~~-~~g~ 788 (847)
. ..|..|.|+..|+.++ ..+.|..||.|+++. ++.. +.+. .....-.++.++++ .++..++ ....
T Consensus 195 s~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccccee
Confidence 5 7899999999988655 778899999999873 1111 1111 01111112333333 3333333 3345
Q ss_pred EEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 789 IQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 789 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++|+....+...+.. ...+.......|+ + -..++++- ..|+|+||.+.
T Consensus 274 LYIWE~~~GsLVKILh--G~kgE~l~DV~wh----p-~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILH--GTKGEELLDVNWH----P-VRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEEEecCCcceeeeec--CCchhheeecccc----c-ceeeeeec-cCCceEEEEee
Confidence 8999866443322221 1122333334455 3 23345555 78899999763
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=154.71 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=171.7
Q ss_pred CCCCCCcEEEEeccC-CceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--eEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~I~~ 685 (847)
.+...|.|-+||+.+ ......+..+..|...|.+|.|+| +-..|++.|.||+|++-|+++... +..+......+.+
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~ 284 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS 284 (498)
T ss_pred EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence 466778999999953 223445667789999999999999 567899999999999999986543 3344335566788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc----eEEE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRV 761 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~----~~~~ 761 (847)
+.|+.+...++.+..=|...+||.++++.....+.-|...|++|+++|...++|+||+.|++++|||+|.-. .+..
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 999988888888887779999999998877888888999999999999999999999999999999998632 2233
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc---ccCCC----CccccccccccccCCCcEEEEE
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG---WYGSD----EIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~---~~~~~----~~~~~~w~~~~~~~~~~~l~sG 833 (847)
...|...|.+..|.. ...+++.+.+..|+|||...+... ++..+ +.... ...-..|+ + +..+|++|
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~----P-~~~li~vg 438 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWD----P-DYNLIVVG 438 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeeccCcccccccchhheeC----C-CccEEEEe
Confidence 346777787776653 345889999999999997422211 11111 11111 11223455 4 67889999
Q ss_pred eCCCeEEEEEc
Q 003106 834 CGDSSLSSFIA 844 (847)
Q Consensus 834 s~DG~V~vW~~ 844 (847)
-.-..|-||+.
T Consensus 439 ~~~r~IDv~~~ 449 (498)
T KOG4328|consen 439 RYPRPIDVFDG 449 (498)
T ss_pred ccCcceeEEcC
Confidence 99888998875
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=147.26 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=133.7
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEc--cCCCCeEEEEEcCCCCEE-EEEeCCCcEE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRL-ATSSFDKTVR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~--~h~~~I~~v~fsp~~~~L-asgs~Dg~V~ 705 (847)
+..+++|.+.|+|++|+.||++|+|++.|++|+||+++..... +.++ -.-+.-+.|+|.||.+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4467899999999999999999999999999999999864221 1111 112346889999998765 4455567899
Q ss_pred EEECCCC--Cc-e--------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 706 VWDADNP--GY-S--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 706 iWD~~~~--~~-~--------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
+|.+... +. . +..-+.|...|..+-....+. ++++|+.|.+|.+||++ |..+..+...-...+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9977531 11 1 111134555666666655554 67799999999999999 8877777654333332333
Q ss_pred cC-CCEEEEEcCCCcEEEEcCCcccceeeecc-ccc----CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 775 MN-RPCLWDKLDAGDIQISDSLFINANIFCGL-GWY----GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 775 ~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~-~~~----~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+ +..+....-.-.+.+|+..+.....+... ... +...+....++ .+...+++.+.||++||||..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-----CCcceeEEEecCCcEEEeecc
Confidence 32 23344444556678887554333222111 111 22223332222 256789999999999999863
No 159
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2e-13 Score=134.98 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=171.0
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCch---hh-ccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccCCce---
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLEL---RA-DMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQGFS--- 627 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~---~~-~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~~~~--- 627 (847)
+++|.++++++++.. .+..+..... .. .-..++..-.+|+.+-....+|+ ..+.||.|+-|.......
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhcc
Confidence 567778877776654 3444432211 11 11122333445555555555555 455668898887654311
Q ss_pred eeEeEEe--ecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 628 FKEANSV--RAST-----SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 628 ~~~~~~l--~~h~-----~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
.+++..+ .-|. -.|+++-+.|..+-|++++.|+.++-||+++|+..+++++|++.|.||.-......+++|+.
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence 1111111 1122 35889999998888888889999999999999999999999999999998666678999999
Q ss_pred CCcEEEEECCCCCceEEEecc---------C-CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 701 DKTVRVWDADNPGYSLRTFMG---------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~---------h-~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
||+|||||+++ .+++.++.. | ...|.+++.+.+ .+++| ....+.+|.++..+++.+|...... .
T Consensus 177 DGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCG-gGp~lslwhLrsse~t~vfpipa~v-~ 250 (325)
T KOG0649|consen 177 DGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCG-GGPKLSLWHLRSSESTCVFPIPARV-H 250 (325)
T ss_pred CccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccCc---eEEec-CCCceeEEeccCCCceEEEecccce-e
Confidence 99999999999 666666532 2 234667776644 45344 4578999999999988888765543 3
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+.|.. .++..+..+.++.-|..... +....-.++...+...|... + -.+|-.++....+.|++.
T Consensus 251 ~v~F~~-d~vl~~G~g~~v~~~~l~Gv----l~a~ip~~s~~c~s~s~~~~--p--~k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 251 LVDFVD-DCVLIGGEGNHVQSYTLNGV----LQANIPVESTACYSASWQTS--P--IKFISIAGFSNKLHILKD 315 (325)
T ss_pred Eeeeec-ceEEEeccccceeeeeeccE----EEEeccCCccceeeecccCC--c--eEEEEecccceeeeeeec
Confidence 333333 35556666777777653311 11111123334455556532 1 234555666777777653
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.60 E-value=1.8e-13 Score=147.19 Aligned_cols=274 Identities=14% Similarity=0.206 Sum_probs=185.9
Q ss_pred CCCCcceEEEecC--CCeEeec-C-CC---eEEeCCCCchhhccccccccCCCCCc-eEEeeecCC---CCCCCCcEEEE
Q 003106 552 GTTSKPLMMFGTD--GAGTLTS-P-SN---QLWDDKDLELRADMDRLVEDGSLDDN-VESFLSHDD---TDPRDAGGRGM 620 (847)
Q Consensus 552 ~~~~~~~v~~s~d--G~~~~~~-~-~~---~iWD~~~~~~~~~~~~~~~~g~~d~~-v~~~~s~d~---t~~~d~~v~vw 620 (847)
....+..++|++- |..+++- . .. .+||-..+....+.... -+.. ...|...|. .....+.+..|
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 3445678888864 3344332 2 22 67888766544432211 0001 111222222 22346778899
Q ss_pred eccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 621 DVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
+.+++...+....++.+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|. |++|+
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGg 305 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGG 305 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecC
Confidence 999986667777776554 5699999999875 78999999999999998888877779999999999999996 45599
Q ss_pred CCCcEEEEECCCC-----------Cc----------------------------eEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 700 FDKTVRVWDADNP-----------GY----------------------------SLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 700 ~Dg~V~iWD~~~~-----------~~----------------------------~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.|..|..||-.-. +. ...+..+|.+..+.++.+|+.. +++
T Consensus 306 KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~ 384 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLL 384 (626)
T ss_pred ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-hee
Confidence 9999999983210 00 0112236888899999999966 666
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccc
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKV 820 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~ 820 (847)
+|+.|+.|++|+ ..+.+.+. .-...+.|+.+.....+..+...|...+.|........+.. ....+.+..++
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~ys- 456 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVRYS- 456 (626)
T ss_pred eccCcceEEEcc--CCceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe----cCCceEEEEEc-
Confidence 999999999999 33333222 33445677777777789999999999888865422111111 12233333333
Q ss_pred ccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 821 SCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 821 ~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++.+|++|+.|+.|+||.+.
T Consensus 457 ----p~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 457 ----PDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ----CCCCEEEEecCCCeEEEEEEC
Confidence 378999999999999999873
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.8e-14 Score=155.13 Aligned_cols=287 Identities=16% Similarity=0.212 Sum_probs=197.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhcccc--cccc-------------CCCCCceEEeeecCC---
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDR--LVED-------------GSLDDNVESFLSHDD--- 609 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~--~~~~-------------g~~d~~v~~~~s~d~--- 609 (847)
.|...+.++...+.|.+++.++.+ +||.+.++.++..+.. .+.+ .....+ .++....
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~--~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC--VLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc--eEEeCccccc
Confidence 344556788888999999998766 7999999977654321 0000 000011 1111111
Q ss_pred ----------------CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 003106 610 ----------------TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT 669 (847)
Q Consensus 610 ----------------t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~ 669 (847)
....++.+..|.-..... .+-+...-.|...|+.|.|+..|.||+|..-| ..|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 122344555676442211 11234445689999999999999999998764 4799999987
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.+...-|....+.|.++.|+|...+|++++ -..|||||+.. ...++++......|.+++.||.|.++| .++.|+.++
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~ 632 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMC 632 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeE
Confidence 777667766778899999999999988887 56799999987 666777766677899999999999887 888999999
Q ss_pred EEECCCC-ceEEEEeeCCceEEEEEecCCCEEE-EEcCCCcEEEEcCCcc----cceeeecccccCCCCc--cccccccc
Q 003106 750 YWSINNG-SCTRVFKVESFCCWCVNAMNRPCLW-DKLDAGDIQISDSLFI----NANIFCGLGWYGSDEI--PAPSWKVS 821 (847)
Q Consensus 750 iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~--~~~~w~~~ 821 (847)
.||+.-. +..+++..|...++.+++....-++ +++++|.+.||...-. ...++.......+... ...+.+..
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 9999854 5778899999999999988776555 5667799988763211 1122222222111111 12233333
Q ss_pred cccCCCcEEEEEeCCCeEEEEE
Q 003106 822 CRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+++ ....|++++.||+|++|.
T Consensus 713 wHP-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 713 WHP-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccC-CCceEEecCCCceEEeeC
Confidence 445 577899999999999993
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=151.85 Aligned_cols=212 Identities=17% Similarity=0.306 Sum_probs=145.5
Q ss_pred EEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC----------------
Q 003106 618 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---------------- 681 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~---------------- 681 (847)
.+||...| ..+.++++|++.|+|++|+.||++||+|+.|+.|.||.-.-...+ .+ .|.+
T Consensus 36 liyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 36 LVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLAS 110 (1081)
T ss_pred EEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhh
Confidence 34555544 466778999999999999999999999999999999985421111 11 2333
Q ss_pred -----------------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCCCCeEEEEEecCCC
Q 003106 682 -----------------------LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKD 736 (847)
Q Consensus 682 -----------------------~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~ 736 (847)
.|.+++|..||.+|+.|-.||+|.|-+... ...+ ....|..+.|++|+|+|...
T Consensus 111 CsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred cchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC
Confidence 455666666899999999999999886553 2222 22345778999999999632
Q ss_pred ----eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCC
Q 003106 737 ----DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD 811 (847)
Q Consensus 737 ----~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 811 (847)
.+++..+...++.+|.+. |+.+..-+.-.....|+.+ .++..+..+..++.+.+|....+ .....+
T Consensus 190 ~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rLGTvg----- 260 (1081)
T KOG1538|consen 190 EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RLGTVG----- 260 (1081)
T ss_pred CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EEeecc-----
Confidence 467777888888888776 4434333333333445543 46667778888888888764322 121111
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....-+|.+..++ ++..++.||-||+|..|.+.
T Consensus 261 ~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEcc-CCceEEEEEccCeeehhhhH
Confidence 1334578888777 78999999999999998763
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=5.5e-14 Score=147.35 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=147.2
Q ss_pred eeecCC----CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeE
Q 003106 604 FLSHDD----TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKT 674 (847)
Q Consensus 604 ~~s~d~----t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~ 674 (847)
|..+++ +++.|.+|.||.+-.+. ..+++..+.+|...|.-++|+| -.+.|++++.|.+|.|||+.+++.+.
T Consensus 89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali 168 (472)
T KOG0303|consen 89 WCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI 168 (472)
T ss_pred cCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee
Confidence 444444 78899999999987652 2356788999999999999999 45789999999999999999999998
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEe---CCCcEEE
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCD---GDGEIRY 750 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s---~Dg~V~i 750 (847)
++. |.+.|+++.|+.||.+|++.+.|+.|||||.++ +..+..-.+|.+ .-..+.|-.+|. ++.||- .+..|-+
T Consensus 169 ~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 169 TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL 245 (472)
T ss_pred ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence 887 999999999999999999999999999999998 777877777865 345677888877 664553 3678999
Q ss_pred EECCCCc---eEEEEeeCCceEEEEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 751 WSINNGS---CTRVFKVESFCCWCVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 751 WD~~~~~---~~~~~~~~~~~v~~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
||..+-+ ....+....+.+.-+. .+....+++|..|+.|+.|+..
T Consensus 246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 9987643 3334444444333322 2334455678889999998844
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.3e-14 Score=148.88 Aligned_cols=206 Identities=19% Similarity=0.280 Sum_probs=148.3
Q ss_pred cCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 003106 636 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 636 ~h~~~V~~l~fspdg----~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~ 710 (847)
.|......|+|+-|. .+||.||.-|.|+|.|+.++++...+.+|...|+.|.|+|+. .+|+++|.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 366777888888743 478999999999999999999999999999999999999986 578999999999999999
Q ss_pred CCCceEEEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------eEEE--------------------
Q 003106 711 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV-------------------- 761 (847)
Q Consensus 711 ~~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------~~~~-------------------- 761 (847)
+ ..++..| .||.+.|.+|+|+.+|.+ +++|+.|..|++|++...+ +...
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 7888877 579999999999999984 5699999999999998432 1111
Q ss_pred --EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee-------ecccccCCCCcccccccccc--ccCCCcEE
Q 003106 762 --FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF-------CGLGWYGSDEIPAPSWKVSC--RSCRECCL 830 (847)
Q Consensus 762 --~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~w~~~~--~~~~~~~l 830 (847)
-..|...|.|+.+.. ..+++.+.++.|..|........+. +.............+|-+.+ .+ -..+|
T Consensus 245 st~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKML 322 (385)
T ss_pred cccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHH
Confidence 112344444544444 4556666777888887421111100 00000111122334555443 22 25679
Q ss_pred EEEeCCCeEEEEEcc
Q 003106 831 YTGCGDSSLSSFIAG 845 (847)
Q Consensus 831 ~sGs~DG~V~vW~~g 845 (847)
+.|...|.|.+|++.
T Consensus 323 a~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLD 337 (385)
T ss_pred hhccCCCcEEEEECC
Confidence 999999999999985
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=2.9e-14 Score=144.19 Aligned_cols=206 Identities=19% Similarity=0.295 Sum_probs=149.8
Q ss_pred CCCCCcceEEEecCCCe----EeecCCC--eEEeCCCCchhhccccccc---cCCCCCceEEeeecC------CCCCCCC
Q 003106 551 SGTTSKPLMMFGTDGAG----TLTSPSN--QLWDDKDLELRADMDRLVE---DGSLDDNVESFLSHD------DTDPRDA 615 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~----~~~~~~~--~iWD~~~~~~~~~~~~~~~---~g~~d~~v~~~~s~d------~t~~~d~ 615 (847)
.+.-+.+-+.|.||... +++...+ |||.+...+........+. ...+...+..|.... ++.+.|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 34445567788888642 3343333 9999985332222221111 111222333332221 2788899
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPS 691 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~ 691 (847)
+..|||++++........+-+|...|.+|+|..++ ..||++|.||.||+||++..+.-..+. ....+..-++|++.
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999999986666677788999999999999855 478999999999999999765543332 22456788888885
Q ss_pred C-CEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 692 M-PRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 692 ~-~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
. +++|+-.. ...|.|.|+|.+...+..+.+|.+.|+.|+|.|.....++||+.|..+.|||+...
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 4 56777654 45699999999999999999999999999999999999999999999999999753
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.9e-14 Score=154.16 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=184.4
Q ss_pred CCeEEeCCCCchhhccccccccCCCCCceEEeeecC----CCCCCCCcEEEEeccCCc-eeeEeEEeecCCCCEEEEEEc
Q 003106 573 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFS 647 (847)
Q Consensus 573 ~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d----~t~~~d~~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fs 647 (847)
..+|||+.+.+...++........ ..-.+|.... .+.+.|+.+++|.-.... +...+....+ +.-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhh
Confidence 348999998877766544332211 1222232222 256778899999865431 1222233333 345566666
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCe
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 726 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V 726 (847)
....++++|+..++|+|||++...+.+.+++|.+.|++|.++....+||+++..|.|.|..+.+ +....+|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 6668999999999999999998788888999999999999999999999999999999999998 5555556433 4556
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeCCceEE--EEEecCCCEEEEEcCCCcEEEEcCCcccceeee
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVESFCCW--CVNAMNRPCLWDKLDAGDIQISDSLFINANIFC 803 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~~~~v~--~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~ 803 (847)
.-|.|++..+.+|.+++.+|.|.+||+.....+..+ +.|...+. |++..+...+.+..-|+.|.+||...... ..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--TD 245 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--cc
Confidence 799999999999999999999999999987777655 45665554 44455677888999999999999663221 11
Q ss_pred cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 804 GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 804 ~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
...+ ..... .+++.+ .+.+|+.|...|.|..||+.
T Consensus 246 ~l~y--~~Pls----tvaf~~-~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 246 RLTY--SHPLS----TVAFSE-CGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred eeee--cCCcc----eeeecC-CceEEEeecCCceEEEEecc
Confidence 1111 11111 133344 47889999999999999985
No 167
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=148.44 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=112.7
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------Cc--------------eeEEEccCCCCeEEEEE
Q 003106 638 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT--------------LK--------------SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~--------------~~--------------~~~~l~~h~~~I~~v~f 688 (847)
+..|+|+.|-| +...|+.+-.+|.+++||..- +. ++..+....+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999 445666677899999997531 00 11111123457889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|||++||+.+.||.+||||..+ .+.+..++.--+...||+|+|||+ +|++|+.|..|.||.+...+.+..=.+|..+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred cCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccc
Confidence 99999999999999999999998 666667777778899999999998 5569999999999999999999999999999
Q ss_pred EEEEEecC
Q 003106 769 CWCVNAMN 776 (847)
Q Consensus 769 v~~~~~~~ 776 (847)
|..++|+.
T Consensus 377 Vs~VaFDp 384 (636)
T KOG2394|consen 377 VSVVAFDP 384 (636)
T ss_pred eeeEeecc
Confidence 99999885
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.2e-13 Score=157.34 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=182.4
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC--ce
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG--FS 627 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~--~~ 627 (847)
..+.|+|-..-++++... .+||...++....++.-......-...+.....|. +++.||.||||+-... ..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 345666666666655522 78999998876655543322222223333333333 7899999999995543 23
Q ss_pred eeEeEEeec-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcC-CCCEEEEE
Q 003106 628 FKEANSVRA-------STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP-SMPRLATS 698 (847)
Q Consensus 628 ~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp-~~~~Lasg 698 (847)
.+.+..+.+ -.+.=.-++|.-...+|+++|+-..|+|||+++..++..+.. ....|+++.-+- .|+.|++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 333333222 111223456766555666666688999999998887777653 345577765433 36899999
Q ss_pred eCCCcEEEEECCCCC--ceEEEeccCCCC--eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eC---CceE
Q 003106 699 SFDKTVRVWDADNPG--YSLRTFMGHSAS--VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VE---SFCC 769 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~--~~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~---~~~v 769 (847)
..||.||+||.|... ..+..++.|.+. |..+.+.+.|-.-|++|+.||.|++||+|.......+. .+ +..+
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 999999999998643 367788889888 99999999877667799999999999999853333222 22 2246
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+++.......+.+....+.|.||+........+.....+-+..+.. .-.+.+|+ ..-++++|+.|.+|.||..
T Consensus 1308 Tal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs-~scL~FHP-~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGS-VSCLAFHP-HRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred eeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCC-cceeeecc-hhHhhhhccCCceEEEeec
Confidence 7776655444444444499999996543333333222111111111 12233444 3567899999999999975
No 169
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.57 E-value=9e-14 Score=157.55 Aligned_cols=181 Identities=22% Similarity=0.254 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
.+...|.|.++++.+|..-+....-..|.+.|+.++...-++.+++++.||.+++||..+...+..++ -...++++.++
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeee
Confidence 35568899999999883222222236899999999999888999999999999999999888777775 34568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.....++.+.+|-.|+++|+.+ .+.++.|.||.+.|++++|+|||++++ +++.|++||+||+.++.++..+.....++
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWli-sasmD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLI-SASMDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEE-EeecCCcEEEEeccCcceeeeEecCCcce
Confidence 9999999999999999999998 788999999999999999999999665 99999999999999999999888776655
Q ss_pred EEEEecCCCEEEEEcCC-CcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDA-GDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~-g~i~i~d 793 (847)
.--...+...+.+...+ ..|++|.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEE
Confidence 43333455667777666 5588886
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.56 E-value=7e-14 Score=153.26 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=145.2
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
.++.|+.|++|.+..+. ...+...+++|..+|+++.|+| -.+.|++++.|.+|+|||+.+++....|.+|.+.|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 67889999999998752 3345677899999999999999 567999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCC--ce
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNG--SC 758 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~--~~ 758 (847)
+++|+|+|+.+++.|.||+|+||.-+.....+..-++- ...--.|.|.-+|.+++++|-. ...|.+||..+- ..
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 99999999999999999999999999866666655432 2334467888888877766642 356889987753 23
Q ss_pred EEEE--eeC-CceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 759 TRVF--KVE-SFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 759 ~~~~--~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+. ... ...+.....+....+.++..|..|.+|+..+
T Consensus 805 l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 805 LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 3332 222 2234444555666777888888888888554
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=1.8e-13 Score=144.32 Aligned_cols=143 Identities=29% Similarity=0.391 Sum_probs=118.0
Q ss_pred CCCCCCcEEEEeccCCc------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------C------
Q 003106 610 TDPRDAGGRGMDVSQGF------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T------ 669 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~------ 669 (847)
+++.|..|++|-+..+. ..+....+..|...|++|.|+|+|++||+|+++|.|.+|-.. +
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 56677777777766532 445667788999999999999999999999999999999654 2
Q ss_pred --CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 670 --LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 670 --~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
....+.+.+|...|..++|+|++.++++++.|..+++||+.. +..+..+.+|...|..++|.|.+.+ +++-+.|..
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~ 188 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRH 188 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhhh-hhhhccCcc
Confidence 334566778999999999999999999999999999999998 8888899999999999999998763 446666665
Q ss_pred EEEEECC
Q 003106 748 IRYWSIN 754 (847)
Q Consensus 748 V~iWD~~ 754 (847)
.+++++.
T Consensus 189 ~~~~~~~ 195 (434)
T KOG1009|consen 189 PEGFSAK 195 (434)
T ss_pred cceeeee
Confidence 5555553
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=1.6e-15 Score=170.73 Aligned_cols=121 Identities=28% Similarity=0.555 Sum_probs=113.9
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
.+.++.+.+|...|+|+.|...|.+|++|++|..|+||.+++..++..+.+|.+.|++++.+.+..++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35667788999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+.+ +..+..+.+|++.|++|+|+|-. +.+.||+++|||.+
T Consensus 260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9998 88899999999999999999973 67789999999998
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=8e-14 Score=152.32 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=151.8
Q ss_pred CCCCCCcEEEEeccC-----CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------C----CceeE
Q 003106 610 TDPRDAGGRGMDVSQ-----GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD------T----LKSKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-----~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~------~----~~~~~ 674 (847)
++..++++++|++.+ ...++++.+|++|.++|.|+++.+++..+++|+.||+|+.|++. . .....
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 688899999999932 34688999999999999999999999999999999999999543 1 12345
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---------------------------------------
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS--------------------------------------- 715 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~--------------------------------------- 715 (847)
++.||.+.|+.+++|.....|++|+.||+||+|+......+
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 67899999999999999999999999999999987642110
Q ss_pred ----EEEecc-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEEEE
Q 003106 716 ----LRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLWDK 783 (847)
Q Consensus 716 ----~~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 783 (847)
+..+.. ....+..|.++|... +.+++..|+.|+++|..+++.++....|...+.+++++ ++.++..+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~ 549 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSG 549 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCCceEEee
Confidence 011100 113466778888886 55599999999999999999999999999999999876 56788899
Q ss_pred cCCCcEEEEcCC
Q 003106 784 LDAGDIQISDSL 795 (847)
Q Consensus 784 ~~~g~i~i~d~~ 795 (847)
..++.+.+|...
T Consensus 550 s~d~sv~l~kld 561 (577)
T KOG0642|consen 550 SHDGSVRLWKLD 561 (577)
T ss_pred cCCceeehhhcc
Confidence 999999999754
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=3.2e-13 Score=136.52 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=171.1
Q ss_pred EeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCC-----
Q 003106 603 SFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT----- 669 (847)
Q Consensus 603 ~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~D-------g~V~vwd~~~----- 669 (847)
+|+..-.+--.|.-|.+.++..+...-....|..|.+.|..|+-+| |.++|+|+-.| ..+.||.+..
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 3444333445567778877776544445566788999999999999 66777777543 2478998763
Q ss_pred ----CceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-----cCCCCeEEEEEecCC-CeE
Q 003106 670 ----LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNK-DDL 738 (847)
Q Consensus 670 ----~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-----~h~~~V~sl~fsp~g-~~l 738 (847)
.+++..+. .+-+.|.||.|.|++..|++-. |..|.+|++....+.+..+. +|....++-+|+|.. .+.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 23344444 4556899999999999998877 88999999987544344332 355678888999932 234
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEe-eCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFK-VESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPA 815 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 815 (847)
+ ....|+++..||+|+.++...+. .|...|..+.+... ..+.++.++|.|++||.+.....+....+ ..-
T Consensus 187 v-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~------HsH 259 (370)
T KOG1007|consen 187 V-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG------HSH 259 (370)
T ss_pred E-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC------Cce
Confidence 4 34458999999999988776665 56677888887644 46778899999999998765554443332 344
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-+|.+.+++..+.+|++|+.|..|.+|-.+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEecc
Confidence 589999999999999999999999999764
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.53 E-value=3.6e-12 Score=141.46 Aligned_cols=225 Identities=27% Similarity=0.328 Sum_probs=168.7
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CceeEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHF-SSDGK-LLATGGH-DKKAVLWHTDT-LKSKTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~V~vwd~~~-~~~~~~l~~h~~~I~~ 685 (847)
++.++.+.+|+...+. ..+..+..+. ..+..+.+ ++++. +++..+. |+.|++||... ...+..+..|...|.+
T Consensus 83 ~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 160 (466)
T COG2319 83 GSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS 160 (466)
T ss_pred ecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEE
Confidence 3468899999998773 3455555533 37777777 78887 5555455 99999999998 7888889999999999
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEe
Q 003106 686 VRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFK 763 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~ 763 (847)
++|+|++..+++++. |+.+++|++.. ...+..+.+|...|.+++|+|++..++++++.|+.|++||...+.++. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC
Confidence 999999998888885 99999999997 778888888999999999999987566566899999999999888887 677
Q ss_pred eCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 764 VESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 764 ~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.+...+ ...+... ..+..+..++.+.+|+........... ..+...+... .+.+ .+..+++++.|+.+++|
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~----~~~~-~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSV----AFSP-DGKLLASGSSDGTVRLW 311 (466)
T ss_pred CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEE----EECC-CCCEEEEeeCCCcEEEE
Confidence 776653 2233332 466689999999999966444311111 1122222222 2334 46667779999999999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
+..+
T Consensus 312 ~~~~ 315 (466)
T COG2319 312 DLET 315 (466)
T ss_pred EcCC
Confidence 7753
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.6e-14 Score=151.67 Aligned_cols=164 Identities=22% Similarity=0.324 Sum_probs=130.9
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTVRV 706 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~i 706 (847)
....+.+|.+.|+|++|+.||.+|++|++|-.|.|||.-..++++.+. +|...|.|+.|-|. .+.+++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445678999999999999999999999999999999998888877764 89999999999985 457899999999999
Q ss_pred EECCC---------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEee---------CCc
Q 003106 707 WDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKV---------ESF 767 (847)
Q Consensus 707 WD~~~---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~---------~~~ 767 (847)
||+.. .......+..|...|..|+..|++.+.|.+++.||+|+-+|++... |...... .-.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2344566778999999999999998899999999999999999732 2211111 112
Q ss_pred eEEEEE--ecCCCEEEEEcCCCcEEEEc
Q 003106 768 CCWCVN--AMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 768 ~v~~~~--~~~~~~l~~~~~~g~i~i~d 793 (847)
...|+. .....++..|..+-..++||
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhh
Confidence 233333 34556777888887788887
No 177
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=1.7e-12 Score=147.46 Aligned_cols=280 Identities=14% Similarity=0.140 Sum_probs=193.6
Q ss_pred CCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCC-ce-
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS- 627 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~-~~- 627 (847)
..+....|...+..+++++..+.|+-.+.++...+....- ...|........ ....++.+.+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~-----~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLH-----GAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEeccc-----cceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 3344555677788888877777766666554433221111 012222222111 4567888999998874 11
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
...+..++...+.|+++ ++|+. +.|+.|+.+|.+.||++++++.+.++.++.+.|+++.=+|--+.++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 11122223333337776 45643 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-eCCceEEEEEec-CCCEEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-VESFCCWCVNAM-NRPCLWDK 783 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~ 783 (847)
|++++. ++.+.+|+-..+.|++++|..||..++++++..|.+.+||++..+.+..+. .|...+....+. +...+.+.
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 888999975469999999999999999999999999999999988877766 565555555443 55667777
Q ss_pred cCCCcEEEEc--CCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 784 LDAGDIQISD--SLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 784 ~~~g~i~i~d--~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..|..+++|- .......++. +.|+ ..... .+.+....+.++.+++.|++++.|.+.
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~----~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPS----CIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCC--CCCch----heeeeccCcEEEEecccCcchhhhhhh
Confidence 7777776664 2222222221 2222 11111 223333467789999999999888753
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.9e-13 Score=149.73 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=145.7
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC--EEEEEeCCC---
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK--- 702 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~--~Lasgs~Dg--- 702 (847)
..+...+++|++.|+||...|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.||+|+|.++ .||++-.+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34556789999999999999999999999999999999999999998864 344677777777544 222222111
Q ss_pred ------------------------------------------------------------------------------cE
Q 003106 703 ------------------------------------------------------------------------------TV 704 (847)
Q Consensus 703 ------------------------------------------------------------------------------~V 704 (847)
.|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 12
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
.|+++.. .....-|....+.|.++.|+|...++|++. -..|+|||+...+.++.+.....++..++... +..++.+
T Consensus 549 liHQLSK-~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSK-RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEeccc-ccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 2222221 111122223456799999999988777444 46899999999988888888888998888664 5678889
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+..+|.......+. . ..++...++.+.++ . .-.+|++|+.||+|.||.--
T Consensus 626 s~d~k~~WfDldlsskPyk-~-lr~H~~avr~Va~H----~-ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYK-T-LRLHEKAVRSVAFH----K-RYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred cCCCeeEEEEcccCcchhH-H-hhhhhhhhhhhhhc----c-ccceeeeecCCCcEEEEeee
Confidence 9999999999765433222 1 12233444443333 3 45679999999999998653
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=129.52 Aligned_cols=161 Identities=15% Similarity=0.190 Sum_probs=118.4
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEE--ccCC-----CCeEEEEEcCCCCEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNL--EEHS-----SLITDVRFSPSMPRL 695 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------~~~l--~~h~-----~~I~~v~fsp~~~~L 695 (847)
..+..+.+|.++|+.++|. ..+|++|+ ||.|+-|....... +..+ .-|. -.|+++-..|..+-|
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 3455568999999999998 34777776 59999997653211 1111 1222 358999999988888
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----------
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---------- 765 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---------- 765 (847)
+.++.|+.++.||+++ +...++++||++.|.+|.-......+| +|+.||+|||||+++++++..+...
T Consensus 130 ~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 8888999999999999 899999999999999999854444455 9999999999999999999887642
Q ss_pred CceEEEEEecCCCEEEEEc-CCCcEEEEcCCcc
Q 003106 766 SFCCWCVNAMNRPCLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 766 ~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~~~ 797 (847)
..++.+++.+.+ |..+ .+..+.+|+....
T Consensus 208 g~wigala~~ed---WlvCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 208 GKWIGALAVNED---WLVCGGGPKLSLWHLRSS 237 (325)
T ss_pred CceeEEEeccCc---eEEecCCCceeEEeccCC
Confidence 334555553332 3333 3445788886543
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=2.7e-12 Score=130.07 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=164.3
Q ss_pred CCCCCCcEEEEeccCCc-eeeEeEEe-----ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc---eeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGF-SFKEANSV-----RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK---SKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~-~~~~~~~l-----~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h 679 (847)
-+..+..+|+|.+.... .+.+...+ ..+..++++..|+. |-++|.+++-|.++.|||++++. +...+.+|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 56677889999988531 22222222 34677899999998 78899999999999999999763 45667899
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC
Q 003106 680 SSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGD-GEIRYWSINN 755 (847)
Q Consensus 680 ~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~ 755 (847)
...|.+|+|...+. .||+++.||.||+||+|........++.- ..+...++|++...+++++-..| ..|.|.|+|.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 99999999998664 78999999999999999855544444432 46788999999888888876655 6799999997
Q ss_pred C-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc-eeeec-ccccCCCCccccccccccccCCCcEE
Q 003106 756 G-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA-NIFCG-LGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 756 ~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
. ..+..+..|...|..+++. ....+.++.++..+.+||...... ..... ..+.....+.-..|. +.....|
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws----~~~~Dwi 351 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS----SSQPDWI 351 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeec----ccCCCEE
Confidence 4 5788999999999988765 456788888999999999653322 22222 223344455555565 4445566
Q ss_pred EEEeCC
Q 003106 831 YTGCGD 836 (847)
Q Consensus 831 ~sGs~D 836 (847)
+++.+.
T Consensus 352 ai~~~k 357 (364)
T KOG0290|consen 352 AICFGK 357 (364)
T ss_pred EEEecC
Confidence 665443
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.1e-12 Score=136.95 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=167.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
.|+.-+..+.|+.+|++++.++.+ ++|.++..-... +
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------------~ 93 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------------T 93 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------------C
Confidence 455567788999998888887776 567665332111 1
Q ss_pred eeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 628 FKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+++.... .|...|.|++|....++|++|+.+++|.+-|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|
T Consensus 94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence 23333332 4668999999999999999999999999999999988877742 23489999999999999999999999
Q ss_pred EEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEe---e----CCceEEEEEe
Q 003106 705 RVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---V----ESFCCWCVNA 774 (847)
Q Consensus 705 ~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~---~----~~~~v~~~~~ 774 (847)
.+||++..... +..+.......+++.|+|....||++.+..+-+.+||++... .+.... + ...+......
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 99999873312 222333456788999999999999999999999999998653 221111 1 1222333344
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecc----cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGL----GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+...+.+......-.+||.......++... ++.....+.+.++ .+...+++|+.|--|.+|++
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEec
Confidence 4555566666666555565433222222221 2222222222111 13455999999999999987
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.47 E-value=2e-12 Score=148.17 Aligned_cols=221 Identities=19% Similarity=0.176 Sum_probs=161.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--eEE----EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~----l~~h~~~I~~v~ 687 (847)
+.+.+|++.... .+...+ .....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.
T Consensus 222 ~~~~vW~~~~p~--~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCC--CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 378899998762 222222 3567899999999 778899999999999999986544 222 236889999999
Q ss_pred EcCCCC--EEEEEeCCCcEEEEECCCC--------------------------------------------Cce------
Q 003106 688 FSPSMP--RLATSSFDKTVRVWDADNP--------------------------------------------GYS------ 715 (847)
Q Consensus 688 fsp~~~--~Lasgs~Dg~V~iWD~~~~--------------------------------------------~~~------ 715 (847)
|..+.. .|++++.||.|+.|+++.. |.+
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 977644 4999999999999998742 000
Q ss_pred ------------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEEEecC--CCEE
Q 003106 716 ------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCVNAMN--RPCL 780 (847)
Q Consensus 716 ------------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~~~~~--~~~l 780 (847)
+..+..|.+.|++|.++|-+..+|++++ |.+|+||... ...++..+..+...+.++++.. ...+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 1122346788999999999888887777 8999999988 6667777777777788777653 4567
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++..+|.+.+||............... ....+...|. ..+.+|++|...|.|.+|++.
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWS-----PNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEcCCCceehhhhhccccCCccccccc-ccccceeecC-----CCCcEEEEecCCCcEEEEEcC
Confidence 7888899999999654433333222221 3334444444 247889999999999999984
No 183
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.7e-12 Score=135.49 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=150.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~ 713 (847)
..+.|+||.|+|...+|++|+.|++++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 457899999999999999999999999999873 345556656678899999999999 88999999999999998732
Q ss_pred c-eEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 714 Y-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 714 ~-~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
. .+....++. ..+.....++++. +|+..+..|.|.+.-..+++.+..++............+...+|..+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 1 123334443 3466778899988 566888899999999999999999987766444444456688999999999999
Q ss_pred EcCCcccce-eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINAN-IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|+.....+. .+...+..++. . -|...++.+|++|+..|.|.||+.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gt---s-----~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGT---S-----LCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EecCCcceEEEEeecCcccee---e-----eeecCCCceEEeccCcceEEEecc
Confidence 997644221 11222221111 1 123346789999999999999985
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-11 Score=141.71 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=136.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCce--eEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~--~~~l~~h~~~I~~ 685 (847)
+..+..+.+||.... ....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+
T Consensus 180 ~~~~~~i~i~d~dg~----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~ 252 (429)
T PRK01742 180 GSQPYEVRVADYDGF----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGA 252 (429)
T ss_pred CCceEEEEEECCCCC----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCc
Confidence 344678999998654 234566788899999999999999988754 3699999987754 3333333 457
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEE
Q 003106 686 VRFSPSMPRLATSS-FDKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRV 761 (847)
Q Consensus 686 v~fsp~~~~Lasgs-~Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~ 761 (847)
++|+|||+.|+.++ .||.+.|| |+.+ ..+..+..+...+.++.|+|||+.+++++..+|.+.||++... .....
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 89999999887765 68876665 5544 3355666677788899999999988777777888999987542 22233
Q ss_pred EeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 762 FKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 762 ~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+ .+.. .+..+. +...++.... ..+.+||........... .. ......|+ + ++.+|+.++.||.++
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~-~~----~~~~~~~s----P-dG~~i~~~s~~g~~~ 396 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSS-TF----LDESPSIS----P-NGIMIIYSSTQGLGK 396 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecC-CC----CCCCceEC----C-CCCEEEEEEcCCCce
Confidence 3 2222 223333 2234444443 345567754322221111 11 11222233 4 688899998999888
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+|.+
T Consensus 397 ~l~~ 400 (429)
T PRK01742 397 VLQL 400 (429)
T ss_pred EEEE
Confidence 8865
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=3.5e-12 Score=133.38 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=116.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
...|.|||+.+-+.+..+.+...+...+.++.++..+.+||.-+ ..|.|.|||+.+.+.+.++..|.+.|-||+|+++
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence 34589999987644455555556777788888888888998653 3589999999999999999999999999999999
Q ss_pred CCEEEEEeCCCc-EEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 692 MPRLATSSFDKT-VRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 692 ~~~Lasgs~Dg~-V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|.+|||+++.|+ |||+++.+ +..+..|... ...|++|+|++++. +|++.+..++|+||.++.-.
T Consensus 185 G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 999999999998 89999998 7778777543 34688999999988 55566778899999987543
No 186
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.43 E-value=6.2e-14 Score=140.40 Aligned_cols=68 Identities=31% Similarity=0.745 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCCccCCCCCCchHHhHHHHHHHHHHhhccchh
Q 003106 4 TNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHS 72 (847)
Q Consensus 4 ~~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~~~~~~fL~eWw~~fWdif~a~~~~~~s 72 (847)
++-.|||+|..||||||++.++.++|++|+.|.++.++ +.+..+.+||.+|||||||+|+|...+++.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~ 79 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDT 79 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCc
Confidence 56679999999999999999999999999999988765 677889999999999999999987766543
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=1.9e-10 Score=127.15 Aligned_cols=224 Identities=11% Similarity=0.101 Sum_probs=135.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-Cc---eeEEEccCCCCeEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LK---SKTNLEEHSSLITDVR 687 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~---~~~~l~~h~~~I~~v~ 687 (847)
.++.|.+|++.....+..+.... ..+....++|+|++++|++++. ++.|.+||+++ +. .+..+. +...+.+++
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~ 132 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN 132 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence 46788899987322344444333 3345778999999999988875 88999999974 32 222232 334567889
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceE------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--Cc-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSL------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GS- 757 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~- 757 (847)
|+|++++|++++ .++.|++||+++.+... .... .......+.|+|++++++++...+++|.+||+.. ++
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 999999886555 57999999998633221 1111 2344678999999998877766789999999973 33
Q ss_pred -eEEEEeeCC------ceEEEEEecC-CCEEEEEc-CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 758 -CTRVFKVES------FCCWCVNAMN-RPCLWDKL-DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 758 -~~~~~~~~~------~~v~~~~~~~-~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
.+..+.... .....+.+.. ...++... ..+.|.+|+....... .......... ...+.+.+.+ ++.
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~---~~p~~~~~~~-dg~ 286 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTE---TQPRGFNIDH-SGK 286 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEecc---ccCCceEECC-CCC
Confidence 233332211 1122233333 34566654 4677888875322111 1111111000 1223344445 566
Q ss_pred EEEEE-eCCCeEEEEEc
Q 003106 829 CLYTG-CGDSSLSSFIA 844 (847)
Q Consensus 829 ~l~sG-s~DG~V~vW~~ 844 (847)
+|+++ ..+++|.+|++
T Consensus 287 ~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 287 YLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEEEEccCCcEEEEEE
Confidence 66655 45999999976
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.8e-11 Score=141.86 Aligned_cols=227 Identities=17% Similarity=0.211 Sum_probs=153.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC-----CCceeEEEcc---C
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEE---H 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~---h 679 (847)
++.....|++||.+.+..+.....-......|+.+.+-. |..+|++|+.||.||||+-- +.+.+..+.+ +
T Consensus 1081 ~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~ 1160 (1387)
T KOG1517|consen 1081 AADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ 1160 (1387)
T ss_pred EcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc
Confidence 344467899999998855444433334567899999876 66799999999999999743 2233333321 1
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 680 ----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 680 ----~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+.=.-++|--...+|+++++-..|||||+.. +.++. ...+....|+++.-+-.+..++++|..||.||+||.|
T Consensus 1161 ~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1161 LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred CccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecc
Confidence 11113456776666777777789999999998 44444 3355667788888776666789899999999999998
Q ss_pred CC---ceEEEEeeCCce--EEEEEec--CCCEEEEEcCCCcEEEEcCCcccce-eeeccc-c-cCCCCcccccccccccc
Q 003106 755 NG---SCTRVFKVESFC--CWCVNAM--NRPCLWDKLDAGDIQISDSLFINAN-IFCGLG-W-YGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 755 ~~---~~~~~~~~~~~~--v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~-~~~~~~-~-~~~~~~~~~~w~~~~~~ 824 (847)
.. ..+..++.|... |..+.+. +...+++++.+|.|.+||.+..... .+.... + +|+ ..+. +..|.
T Consensus 1240 ~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs-~lTa----l~VH~ 1314 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS-ALTA----LTVHE 1314 (1387)
T ss_pred cCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc-ccee----eeecc
Confidence 74 356777777766 6555543 3346999999999999997753221 111111 1 121 1222 22233
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++++|+. +.|+||++
T Consensus 1315 -hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1315 -HAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred -CCCeeeecCc-ceEEEEec
Confidence 5678999998 99999987
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=7.7e-12 Score=135.55 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=143.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.||.+.+.+- ..+....+.+|.+.|.|-.|++||.-|+|+++||.|++|. ++|-...++......|.|++|.|+
T Consensus 82 s~DGkf~il~k----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 82 SNDGRFVILNK----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred cCCceEEEecc----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCC
Confidence 34555555443 2245566789999999999999999999999999999998 456555566667788999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.+.++.|- .+.+.|=-+.. ...+..++.|.+.|.+++|++..+ ++++|+.|-..+|||-- |..+..-..|...+++
T Consensus 157 S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 157 SNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITS 232 (737)
T ss_pred CCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhccceee
Confidence 87665544 24455555554 445667789999999999999965 78899999999999976 6667777788889999
Q ss_pred EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 772 VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
+++..+ .++...+-..+++ .......+....|+ . ++.-+++|+..|.|.+
T Consensus 233 va~npd-~~~~v~S~nt~R~--------------~~p~~GSifnlsWS----~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYNTARF--------------SSPRVGSIFNLSWS----A-DGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeeeeeee--------------cCCCccceEEEEEc----C-CCceeeccccCceEEE
Confidence 987766 4433333222221 11111222333455 3 6777888888887655
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=1.4e-10 Score=128.19 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=143.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--eEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~~~--~~~l~~h~~~I~~v~ 687 (847)
..++.|++||+.+...++.+..+. +.+....++|+||+++|++++ .++.|.+|+++ +++. +.... .......|+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 457899999997533556666665 346677899999999987765 47899999987 3332 22222 234567899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE---
Q 003106 688 FSPSMPRLATSSF-DKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--- 760 (847)
Q Consensus 688 fsp~~~~Lasgs~-Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~--- 760 (847)
|+|++++|++++. ++.|.+||+++.+. .+..+. +...+.+++|+|+++++++++..++.|++||+++...+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999999988764 88999999975332 223332 334577899999999888888888999999998743221
Q ss_pred --EEee-CCceEEEEEec-CCCEEEEEcC-CCcEEEEcCCcccc--eeeecccccCCCCccccccc--cccccCCCcEEE
Q 003106 761 --VFKV-ESFCCWCVNAM-NRPCLWDKLD-AGDIQISDSLFINA--NIFCGLGWYGSDEIPAPSWK--VSCRSCRECCLY 831 (847)
Q Consensus 761 --~~~~-~~~~v~~~~~~-~~~~l~~~~~-~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~l~ 831 (847)
.... .......+.+. +...+|.... ++.|.+|+...... ........... ......|. +...+ ++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~p-dg~~ly 243 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA-DFSDTRWAADIHITP-DGRHLY 243 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC-cCCCCccceeEEECC-CCCEEE
Confidence 1111 11223344444 3345666655 78899998642111 11111111101 01111232 22334 677777
Q ss_pred EEe-CCCeEEEEEc
Q 003106 832 TGC-GDSSLSSFIA 844 (847)
Q Consensus 832 sGs-~DG~V~vW~~ 844 (847)
++. .+++|.+|++
T Consensus 244 v~~~~~~~I~v~~i 257 (330)
T PRK11028 244 ACDRTASLISVFSV 257 (330)
T ss_pred EecCCCCeEEEEEE
Confidence 774 5899999987
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.5e-11 Score=127.36 Aligned_cols=266 Identities=19% Similarity=0.263 Sum_probs=169.9
Q ss_pred eecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCC-CCEE
Q 003106 569 LTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRAST-SKVI 642 (847)
Q Consensus 569 ~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~ 642 (847)
+..++.+|||..++.....+.... .....++ |...+. +++.||+||+||++.. .......+..|. .+..
T Consensus 47 lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vr-f~~~ds~h~v~s~ssDG~Vr~wD~Rs~-~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 47 LSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVR-FISCDSPHGVISCSSDGTVRLWDIRSQ-AESARISWTQQSGTPFI 121 (376)
T ss_pred ecCCeEEEEeccchhhhheecCCC---CcccceE-EecCCCCCeeEEeccCCeEEEEEeecc-hhhhheeccCCCCCcce
Confidence 445667999999987766544322 2222232 333222 7899999999999976 223344455665 5677
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEECCCCce-eEEE-ccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCc-
Q 003106 643 CCHFSSDGKLLATGG----HDKKAVLWHTDTLKS-KTNL-EEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGY- 714 (847)
Q Consensus 643 ~l~fspdg~~Lasgs----~Dg~V~vwd~~~~~~-~~~l-~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~- 714 (847)
|++..-.+..|++|. .|-.|.+||++..+. ++.+ ..|.+.|++|+|+|.. +.|++||.||-|.|||++...+
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 888776778888885 366899999996654 5554 5799999999999974 5889999999999999986322
Q ss_pred -eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------------ceEEEEEecC-CCE
Q 003106 715 -SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------------FCCWCVNAMN-RPC 779 (847)
Q Consensus 715 -~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------------~~v~~~~~~~-~~~ 779 (847)
.+.....|.+.|.++.|+.++-.-+.+-+.+.+..+|+++.+.++..+.... ..|.+..... ...
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 2333335778899999998872234477788999999999988666554321 1122221111 122
Q ss_pred EEEEcCCCcEEEEcCCcc-cceee---ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 780 LWDKLDAGDIQISDSLFI-NANIF---CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~-~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...+...+...++-.... ..... ..+...+...+....|+ ....+++||+.||.|.+|++
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~-----~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD-----VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh-----cccceeeccCCCceEEEEec
Confidence 223333444444432211 11111 11111123334444555 35788999999999999984
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=6.9e-13 Score=149.91 Aligned_cols=177 Identities=25% Similarity=0.335 Sum_probs=141.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..|..++||..+++ .++..++||.+.|++++.+....++++++.|..|+||.+.++.++..+.+|++.|++|+|+
T Consensus 207 tgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred ecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence 6778889999998876 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CC--------------------------------------------------------
Q 003106 690 PSMPRLATSSFDKTVRVWDAD-NP-------------------------------------------------------- 712 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~-~~-------------------------------------------------------- 712 (847)
|-- +.+.||++++||.+ ..
T Consensus 284 P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t 359 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVT 359 (1113)
T ss_pred ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEe
Confidence 954 77889999999987 10
Q ss_pred -------------------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 713 -------------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 713 -------------------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..+..+.+|...++.+.|||-..++..+++.||.+.|||+-.|..++.+.....
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 0001112367888999999999998988999999999999999988877664444
Q ss_pred eEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.+....|. ++..+....+-|.++|..
T Consensus 440 kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred eeeccccCCCCceEecCCCCCceEEec
Confidence 44333333 333444444555566654
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=7.5e-12 Score=136.03 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=109.3
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
++..+.--.+.|...+|++||++||+.+.||.+||||.++.+++..++..-+...||+|+|||++|++|+.|.-|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 44444445668999999999999999999999999999998888887777788999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEecC-----------------------------------------------CCeEEEEE
Q 003106 710 DNPGYSLRTFMGHSASVMSLDFHPN-----------------------------------------------KDDLICSC 742 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~-----------------------------------------------g~~ll~s~ 742 (847)
.. ++.+..-.+|++.|..|+|+|- -.+-|.+.
T Consensus 362 ~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 362 EE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred cc-ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 98 7888888999999999999831 02456688
Q ss_pred eCCCcEEEEECCCCc
Q 003106 743 DGDGEIRYWSINNGS 757 (847)
Q Consensus 743 s~Dg~V~iWD~~~~~ 757 (847)
+.|..+++||+....
T Consensus 441 GqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 441 GQDTQLCLWDLTEDV 455 (636)
T ss_pred cccceEEEEecchhh
Confidence 889999999997543
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=2.8e-11 Score=138.90 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=168.3
Q ss_pred CCCcceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccCCCCCce--EEeeecCC-----CCCCCCcEEEEe
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDGSLDDNV--ESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g~~d~~v--~~~~s~d~-----t~~~d~~v~vwd 621 (847)
...+.++.|.|....+++++.. -+||+..+........-...+.++..+ .+|..... +.+.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 3456788899877766665533 789999877632111112222333333 33422211 566799999998
Q ss_pred ccCCceeeEeEEe--e-------cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC---CC-----ceeEEEccCCCCe
Q 003106 622 VSQGFSFKEANSV--R-------ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD---TL-----KSKTNLEEHSSLI 683 (847)
Q Consensus 622 ~~~~~~~~~~~~l--~-------~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~---~~-----~~~~~l~~h~~~I 683 (847)
++.-........+ . .-...+++++|.+ +-..|+.|+++|.|..-+-. .. +....+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7753111111111 1 2234688999998 66789999999999873322 21 2233556789999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--ceEEE
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRV 761 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~--~~~~~ 761 (847)
++|.++|-+..++..+.|.+|+||.......++..+..+...|++++|+|....+|+++..||.|.|||+... ..+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 9999999887666655599999999884367788888888899999999999999999999999999999754 45555
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCC
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~ 795 (847)
.+.......++.+.. ...+..|...|.+.+++..
T Consensus 482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 555555555565555 6678889999999998853
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=4.9e-12 Score=133.58 Aligned_cols=137 Identities=22% Similarity=0.385 Sum_probs=114.1
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 638 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 638 ~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~---------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
..+|..+.|..++. +|+||+.|..|+||-+... +.+..+..|...|++|+|+|+|+.|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999666 9999999999999987632 2234567899999999999999999999999999999
Q ss_pred ECC--------C-----C--CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 708 DAD--------N-----P--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 708 D~~--------~-----~--~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
-.. + . ....+.+.+|...|+.++|+|++. ++++++.|..+++||+..|..+..+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 0 123456678999999999999987 56699999999999999999999998888777666
Q ss_pred Eec
Q 003106 773 NAM 775 (847)
Q Consensus 773 ~~~ 775 (847)
+++
T Consensus 172 awD 174 (434)
T KOG1009|consen 172 AWD 174 (434)
T ss_pred ecc
Confidence 544
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=1.8e-10 Score=120.70 Aligned_cols=151 Identities=18% Similarity=0.207 Sum_probs=114.9
Q ss_pred CcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------t~~~d~~v~vwd~~~~~~ 627 (847)
.+.+|.+..+--.++-.....|+|++++++...++..-. ....++.+..... .....|.|.+||+. .
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~---n 162 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI---N 162 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCceEEEEEcc---c
Confidence 344555555444445566678999999988877654411 1111222222111 33447889999998 4
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEECCCCceeEEEccCC--CCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA-VLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V-~vwd~~~~~~~~~l~~h~--~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
++.+.++..|++.|-|++|++||.+|||+|+.|+| |||++.+|..+..|+... ..|.+|+|++++.+|++.+..++|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 58889999999999999999999999999999975 999999999999997543 458999999999999999999999
Q ss_pred EEEECCC
Q 003106 705 RVWDADN 711 (847)
Q Consensus 705 ~iWD~~~ 711 (847)
+||.++.
T Consensus 243 HiFKL~~ 249 (391)
T KOG2110|consen 243 HIFKLEK 249 (391)
T ss_pred EEEEecc
Confidence 9998864
No 197
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=130.85 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC----eEEeCCCCchh--hcccccc---ccCCCCCceEEeeecCC-----------
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELR--ADMDRLV---EDGSLDDNVESFLSHDD----------- 609 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~--~~~~~~~---~~g~~d~~v~~~~s~d~----------- 609 (847)
+......+.|..+|||.|+++.+.. ++||+....+. ..++.-+ ...+-|-.-.+|+-.|-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4445566789999999999998865 78998765432 1111100 00000000001111110
Q ss_pred ----------------------CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 610 ----------------------TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT 667 (847)
Q Consensus 610 ----------------------t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~ 667 (847)
.++....|.-++++.| ..+..+..-.+.|++|..++-..+|++|+.||.|-+||.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEcccc---ccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 2223334455556555 333444556689999999998889999999999999999
Q ss_pred CCCceeEEEcc------CCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCC-
Q 003106 668 DTLKSKTNLEE------HSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK- 735 (847)
Q Consensus 668 ~~~~~~~~l~~------h~~-----~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g- 735 (847)
++...+.++.. |.+ .|++|.|+.+|-.+++|..+|.|.|||+++....+..-.+..-+|..+.|.+.+
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 88776666542 333 399999999999999999999999999998544444444556688899997652
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
...|+|+. ...++|||-.+|+....+......-..+.+.+...++.+.++..+..|-
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 23454654 5789999999999888776555432233345666777777777765543
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.35 E-value=1.1e-10 Score=120.24 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=149.9
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE--EeeecCC---CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~--~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
.++.+.+|+.|+..++.+..+ .|+.....+.......+.. +|..+. .|..... +++.|....+|....+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~---Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE---HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh---hCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 356788999999988876654 6777776664443333322 233332 3433322 8899999999999666
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~----~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.++++...+..++..++|+.|+|.++.||+|+.-+.|.||-.+...-- +.-+-+.+.|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 699999999999999999999999999999999999999987743221 1223567889999999999999999999
Q ss_pred CcEEEEECCC-----C------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 702 KTVRVWDADN-----P------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 702 g~V~iWD~~~-----~------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+.+|||..-- . +..+.++....+.|..+.|+|.|..| +-.+.|.+|.+-|.....
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l-awv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL-AWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe-eEecCCCceEEeecCCCc
Confidence 9999996521 0 12234444567889999999999854 577789999999987664
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=7.8e-12 Score=133.85 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=166.8
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeE
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+.++.+|++++.++.- ..+|..++.+..++.-.... .| | -+.+.. .......+.|||-.. .+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv--~D--v--~~LHneq~~AVAQK~y~yvYD~~G----tE 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETV--RD--V--TFLHNEQFFAVAQKKYVYVYDNNG----TE 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhh--hh--h--hhhcchHHHHhhhhceEEEecCCC----cE
Confidence 457889999999887755 45777777665543321100 00 0 111111 334556777888643 46
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
+.+++.| ..|..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|..+|+|.+|...
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 6677665 468899999998899999999999999999999999999888999999999999899999999999999998
Q ss_pred CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEE
Q 003106 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~ 790 (847)
. ...+..+.+|.+.|.+|+++++|. +++|.+.|..|+|||++....+.++.. ......++++....+ +.+.+..+.
T Consensus 282 s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A~~~G~~v~ 357 (545)
T KOG1272|consen 282 S-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-ALSYGDHVQ 357 (545)
T ss_pred C-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec-CCCccccccccccce-eeecCCeee
Confidence 7 677777789999999999999987 566999999999999999886666655 333444554444444 444555677
Q ss_pred EEc
Q 003106 791 ISD 793 (847)
Q Consensus 791 i~d 793 (847)
+|.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 775
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=9.6e-11 Score=119.00 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=92.0
Q ss_pred CCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 003106 638 TSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNP 712 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasg--s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~---Dg~V~iWD~~~~ 712 (847)
.+.|.+++|+|+|+.||+. ..++.|.|||++ ++.+..+. ...+..|.|+|+|++|++++. .|.|.+||+++
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~- 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK- 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 4569999999999987655 356799999997 66666663 567889999999999999875 46799999997
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCceEEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~V~iWD~~~~~~~~~~ 762 (847)
...+.++. | ..++.++|+|+|++++.+.+. |+.++||++. |+.+...
T Consensus 135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 66666654 4 347899999999977755543 7889999985 6555444
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.31 E-value=5.9e-12 Score=126.16 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=115.9
Q ss_pred CCCCCcEEEEeccCCc-------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce--eEEEccC
Q 003106 611 DPRDAGGRGMDVSQGF-------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKS--KTNLEEH 679 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~--~~~l~~h 679 (847)
+-.+|.+.+||+.++. .++.+..+..|..+|.++.|.+.-..=++|+.+..+..|.+.. +.+ -.+++-.
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 4567788888888751 2345556678999999999998777778888888999998862 222 2223333
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
.-.|..+.+.||++.|||+++|+.||||..++ ...+..++-|.+.|++|+|+|+.+ ++++++.|+.|.+|++
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 45689999999999999999999999999999 788999999999999999999954 8889999999999986
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.5e-11 Score=125.83 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=122.7
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.+.+.+|.+.|++|.|+.++++|++|++|..++||+++. .+++..... |...|.|++|.-..+.|++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345678999999999999999999999999999999863 355554443 5588999999999999999999999
Q ss_pred EEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEe-e-CCceEEEEEec--C
Q 003106 704 VRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK-V-ESFCCWCVNAM--N 776 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~-~-~~~~v~~~~~~--~ 776 (847)
|.+.|+++ ...+..+.. ..+.|+.+..+|. .++|++.+.++.|.|||.+... .+..+- . .......+.|. .
T Consensus 129 VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIET-KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeeccc-ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999998 666666642 2358999999999 4577799999999999998754 222111 1 11222223222 2
Q ss_pred CCEEEEEcCCCcEEEEcCCcc
Q 003106 777 RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~ 797 (847)
...+.+..+.+-+-+||.+..
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ceeEEeccccCCCCceeeccc
Confidence 234556667777888885543
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.29 E-value=3.1e-11 Score=133.50 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=143.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|.+++|-|||..|+.+.. ..+.|||...|..+.++++|.+.|+||+|+.||+++++|+.|+.|.||.-.-.+ +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 7999999999999888764 579999999999999999999999999999999999999999999999876522 2223
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
.|.+.|.|+.|+|-.. .+++|+.. ..-+|...... +...+.....+.|....++..+..+..+|+|.+-+......
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 5999999999999965 56688854 67899876543 33333333444444445566777888999999886544333
Q ss_pred eeeecccccCCCCccccccccccccC----CCcEEEEEeCCCeEEEEEc
Q 003106 800 NIFCGLGWYGSDEIPAPSWKVSCRSC----RECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+-+ .....+|++.|.+. ....+++.....++.+|.+
T Consensus 167 ~~I~Rpg-----g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 167 VKIERPG-----GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred eEEeCCC-----CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 3333322 22344666665443 3467888888888888865
No 204
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=3.7e-10 Score=115.11 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=105.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
...++.|++.+..++++..+|.+.+-+...... +.+++.|.-.++-..|+.. .+.+++|++|+.+..||+|.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 355888999999999999999998666554433 4478899999999999865 4578999999999999999655554
Q ss_pred EE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEEEeeCCceEEEEEe
Q 003106 717 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 717 ~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~~~~~v~~~~~ 774 (847)
.. .+.|...|.+|.-+|-.+.++++|+.|..|++||.|+ ++++..-... +.||.+..
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~ 261 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKH 261 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceEEEEe
Confidence 44 5679999999999998888999999999999999995 5555443322 44555543
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1.4e-10 Score=116.35 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=123.5
Q ss_pred CCCEEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 638 TSKVICCHFSS-DGK--LLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~--~Lasgs~Dg~V~vwd~~~~----------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+.|.|..+.. +++ +|+.|-++|.|.+||+.++ +.+..+..|..+|++|.|.+....=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 35677777544 333 4667778999999999987 4444556799999999999877777888989999
Q ss_pred EEEECCCCCce--E-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEE
Q 003106 705 RVWDADNPGYS--L-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCL 780 (847)
Q Consensus 705 ~iWD~~~~~~~--~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 780 (847)
..|.+...... + .+.+--.-.|..+...||++ +++|++.|+.||||..++...+.+++.|...|.+++|..+ ..+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 99998753111 1 11222234588899999987 8899999999999999999999999999999999999877 667
Q ss_pred EEEcCCCcEEEEcC
Q 003106 781 WDKLDAGDIQISDS 794 (847)
Q Consensus 781 ~~~~~~g~i~i~d~ 794 (847)
..++.|+.|.+|+.
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 78889999999973
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.3e-11 Score=127.49 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=136.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-
Q 003106 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~- 720 (847)
.+++|+.||..|++|+.||++|||+..+...+.....|...|.+++|+|||+.|++.+.| ..+|||+++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999998888888888999999999999999999999999 999999998 54444433
Q ss_pred -cCCCCeEEEEEecCC--CeEE--EEEeCCCcEEEEECCCCceE-----EEEeeCCceEEEEEecC-CCEEEEEcCCCcE
Q 003106 721 -GHSASVMSLDFHPNK--DDLI--CSCDGDGEIRYWSINNGSCT-----RVFKVESFCCWCVNAMN-RPCLWDKLDAGDI 789 (847)
Q Consensus 721 -~h~~~V~sl~fsp~g--~~ll--~s~s~Dg~V~iWD~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i 789 (847)
.-......+.|..++ +.++ +.-..-+.|+.||+...+.- +........+.+++... ...+..++.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345667787765 2232 23334467888877653321 11112234577777654 4556678889999
Q ss_pred EEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 790 QISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 790 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+++........+.... |...++...+. | +.+++++-+.|..+.|.++
T Consensus 306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~----P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFS----P-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEEEeceeeeeEeehhh--heeeeeeEEEc----C-CcCcccccccCCceeEEEE
Confidence 99997655444444433 34455554444 3 5666777777777776654
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=1.9e-10 Score=118.53 Aligned_cols=185 Identities=19% Similarity=0.181 Sum_probs=140.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-C--CCceeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-D--TLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~--~~~~~~~l~~h~~~I~~v 686 (847)
.+.....+.||.......++...++..|...|++|+|+|..+.|++|+.|...+||.. + +.++...+..+...++||
T Consensus 27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV 106 (361)
T ss_pred eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE
Confidence 3455668889998888569999999999999999999999999999999999999998 3 335556677899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-----C---
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-----N--- 755 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-----~--- 755 (847)
.|+|.++.||+|+.-..|.||-++.... ....-+.+.+.|++++|+|++- ++++|+.|+..|||..- +
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCC
Confidence 9999999999999999999998875211 1122345788899999999964 78899999999999641 1
Q ss_pred ----------CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCC
Q 003106 756 ----------GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ----------~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~ 795 (847)
|..+..+....+.+..+.+.. ...+.-...+..+.+.|..
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 223334444456666666652 3344444455666666533
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1e-11 Score=134.99 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=124.7
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecC-CCeEEEEEeCCCcEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRY 750 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~i 750 (847)
..++.+|.+.|+|++|+.+|.+|++|++|-.|.|||.-. .+.+. .-.||...|.++.|-|. +.+++++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 356889999999999999999999999999999999986 44444 44799999999999985 5668889999999999
Q ss_pred EECCC----------CceEEEEeeCCceEEEEEe--cCCCEEEEEcCCCcEEEEcCCcccceee---ecccccCCCCccc
Q 003106 751 WSINN----------GSCTRVFKVESFCCWCVNA--MNRPCLWDKLDAGDIQISDSLFINANIF---CGLGWYGSDEIPA 815 (847)
Q Consensus 751 WD~~~----------~~~~~~~~~~~~~v~~~~~--~~~~~l~~~~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~ 815 (847)
||+.. .+.++.+.+|...|..++. .....+|+.+++|.|+-+|.+..+.... +............
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99984 2334445566665555543 3447899999999999999654221111 0000000011112
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+...+.+..+|++|+.|-.+++||.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 23334456667899999999999999983
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-09 Score=124.30 Aligned_cols=196 Identities=16% Similarity=0.126 Sum_probs=130.6
Q ss_pred ceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccC-Ccee
Q 003106 557 PLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQ-GFSF 628 (847)
Q Consensus 557 ~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~-~~~~ 628 (847)
..+.+++.|.+.+. .-.+.+|++.... ...........+..++.++ +++.+ ++..||.|.+|.-.. ...-
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 35566666665444 3444678877644 1111111111122222222 22222 566778899998554 2233
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.....++-|.+.|++++|++||.+|++||..|.+.+|.+++++ ..-+..-.+.|..+.++||+++.+....|+.|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 4556788899999999999999999999999999999999888 455666778999999999999999999999999987
Q ss_pred CCCCCceEEEec-----------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 709 ADNPGYSLRTFM-----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 709 ~~~~~~~~~~~~-----------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..+. ....++. .-.+-.+.++++|.-+ .++-++..|.|.+||+-+.+
T Consensus 321 ~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 321 ASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ccch-hhhhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccc
Confidence 7542 1111111 1244567788888433 44567777888888875543
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.4e-11 Score=125.31 Aligned_cols=177 Identities=19% Similarity=0.126 Sum_probs=129.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~ 687 (847)
+++.||++|+|++... ..+..+..|...|.+++|+|||++|++-+.| ..+||+++++..+.... .....+..++
T Consensus 161 tgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred eccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 8899999999997643 4566677899999999999999999999999 99999999997766554 2334467889
Q ss_pred EcCCC---CEE--EEEeCCCcEEEEECCCCCc----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSM---PRL--ATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~---~~L--asgs~Dg~V~iWD~~~~~~----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+.++ .++ +.-..-+.|+.||+..... ..+........|.+++.+.+|+ +++.|+.||.|-|++..+.++
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeee
Confidence 98877 332 3334456688877754222 1222222334699999999988 677999999999999999888
Q ss_pred EEEEe-eCCceEEEEEecCCCE-EEEEcCCCcEEE
Q 003106 759 TRVFK-VESFCCWCVNAMNRPC-LWDKLDAGDIQI 791 (847)
Q Consensus 759 ~~~~~-~~~~~v~~~~~~~~~~-l~~~~~~g~i~i 791 (847)
+..++ .|...|+.+.|.++.. +...+.+..+.+
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 77665 6777889888876543 333444444433
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-09 Score=128.35 Aligned_cols=245 Identities=13% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCCCCCcceEEEecC-CCeEeecCCC---eEEeCCCCchhh-cccc---ccccCCCCCceEEeeecCC--CCCCCCcEEE
Q 003106 550 HSGTTSKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRA-DMDR---LVEDGSLDDNVESFLSHDD--TDPRDAGGRG 619 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~-~~~~---~~~~g~~d~~v~~~~s~d~--t~~~d~~v~v 619 (847)
+.|...+..++.+++ +.++++++++ ++||........ .+.. +...+.....+......+. .++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 344444445555554 4777776655 999998755431 1111 1111111111221111111 4688999999
Q ss_pred EeccCCc----eeeEeEEeecC--CCCEEEEEEcC-CCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEc
Q 003106 620 MDVSQGF----SFKEANSVRAS--TSKVICCHFSS-DGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFS 689 (847)
Q Consensus 620 wd~~~~~----~~~~~~~l~~h--~~~V~~l~fsp-dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fs 689 (847)
.++.-.. ..........+ ...|.+-+|.. +.. .|+.+..-+.|..||+.......+++ ...+.|++++.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence 8887521 11122222222 23344555554 344 78888888999999998766555443 345789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCC--e-EEEEEe-CCCcEEEEECCCCceEEEEee
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKD--D-LICSCD-GDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~--~-ll~s~s-~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|.+.++++|...|.+.+||+|- +..+..+ ..+...++.|..+|..+ . .+.+++ ..+.|.+|++.+|.+..++..
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred CCceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 9999999999999999999997 4545444 45667888888887644 3 443444 578999999999988777754
Q ss_pred C-C-------------------ceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 765 E-S-------------------FCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 765 ~-~-------------------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
. . ..+.|........+.++..+..|+.||..
T Consensus 1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 3 1 11233334456778899999999999943
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.24 E-value=5.8e-10 Score=131.62 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=142.5
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 628 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
...+..+..|...|..++.+++. .+|+|||.||+|+|||.... +...++.-....+.++.+.+.++.+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 35788889999999999998855 99999999999999998631 23334444567899999999999999999
Q ss_pred CCCcEEEEECCCC------------------CceE-------------EE-----------------------eccCCCC
Q 003106 700 FDKTVRVWDADNP------------------GYSL-------------RT-----------------------FMGHSAS 725 (847)
Q Consensus 700 ~Dg~V~iWD~~~~------------------~~~~-------------~~-----------------------~~~h~~~ 725 (847)
.||.|++.+++.. +..+ .. .....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999988651 0000 00 0012467
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-eE---EEEEecC--CCEEEEEc-CCCcEEEEcCCccc
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-CC---WCVNAMN--RPCLWDKL-DAGDIQISDSLFIN 798 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-~v---~~~~~~~--~~~l~~~~-~~g~i~i~d~~~~~ 798 (847)
|++++.+|.+. +++.|+..|.+.+||+|=+..+..+..... .+ ++..... ...+.++. ..+.+.+|+.....
T Consensus 1198 vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99999999987 566999999999999998888877764322 22 2222222 33444454 56678888744322
Q ss_pred ce--eeecccc-----c-CCC--Ccccccccccc-ccCCCcEEEEEeCCCeEEEEEccC
Q 003106 799 AN--IFCGLGW-----Y-GSD--EIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 799 ~~--~~~~~~~-----~-~~~--~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. +....+. . ... ......-...| ......++++|+.|+.||.||..+
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 21 1111010 0 000 00000001111 222457899999999999999753
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.6e-09 Score=110.61 Aligned_cols=135 Identities=18% Similarity=0.262 Sum_probs=101.4
Q ss_pred CCCcEEEEeccCCceeeE-----------eEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCC
Q 003106 613 RDAGGRGMDVSQGFSFKE-----------ANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~-----------~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
-.+.|.+|.......... +....+| ..|+++.|.+||..|++++. |..|+|||++++..+......-
T Consensus 160 Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 160 CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 346678888665321111 2223345 68999999999999999986 5789999999988776664556
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
+.++-+.|+||+.+|+++.-|+..++|.......+.+-.. ..+.|..-+|+|+|..+|++++..-.|+
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 7789999999999999999999999996655233333333 3458999999999999998887554443
No 214
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.4e-09 Score=120.49 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=123.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+...|.|-+|++..+ .++....-..|-+.|.++-++.+-..|.+++.|+.|.+|+...+..++.+.+....+.+++++|
T Consensus 76 gt~~g~v~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred ecCCccEEEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 445677888888877 4444444568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecC-----CCeEEEEEeCCCcEEEEECCC
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-----KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~-----g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|+..|++++ +.|++||+++ ++.+.+|.||.+.|.++.|--+ |.++|.+...+..|.+|-++.
T Consensus 155 D~~~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999987 7899999999 8999999999999999999877 788887777778888997764
No 215
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2e-09 Score=119.30 Aligned_cols=161 Identities=12% Similarity=0.130 Sum_probs=132.2
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc--------------------CCCCEEEEEeCCCcEEEEECCCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS--------------------SDGKLLATGGHDKKAVLWHTDTL 670 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs--------------------pdg~~Lasgs~Dg~V~vwd~~~~ 670 (847)
...||.+|+||+.++..-.++.-...-++..++..|. .|-..|+-|...|.|.+|++..+
T Consensus 11 ~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g 90 (541)
T KOG4547|consen 11 STGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGG 90 (541)
T ss_pred cCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCC
Confidence 4578999999999873322222222234455555552 24457888888999999999999
Q ss_pred ceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 671 KSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 671 ~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
+...++. .|.+.|.++-++.+-..|.+++.|+.|.+|+... +..++.+.+....+.+++.+||+. ++++++ +.|
T Consensus 91 ~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~i 166 (541)
T KOG4547|consen 91 EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQI 166 (541)
T ss_pred eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCC-EEEecc--ceE
Confidence 9988886 6889999999999988999999999999999998 788899999999999999999987 555765 789
Q ss_pred EEEECCCCceEEEEeeCCceEEEEEec
Q 003106 749 RYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 749 ~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
++||+++++.+..|.+|...|.++.|.
T Consensus 167 k~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 167 KVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEEEccCceEEEEecCCCcceEEEEEE
Confidence 999999999999999999999998764
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=9.6e-10 Score=126.06 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=107.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vw--d~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..+.+||+.++ ..+.+..+.+| ..+++|+|||++|++++ .||.+.|| |++++. +..+..+...+.++.|+|
T Consensus 227 ~~~i~i~dl~tg-~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 227 KSQLVVHDLRSG-ARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred CcEEEEEeCCCC-ceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC
Confidence 346788888776 33344444444 34689999999888765 68876655 665555 455666777789999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 691 SMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 691 ~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
||+.|+.++ .++.+.||+++..+.....+ .+.. .++.|+|+|+.++++ +.+ .|.+||+.+++..........
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~-~~~-~i~~~Dl~~g~~~~lt~~~~~-- 374 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI-NGD-NVVKQDLTSGSTEVLSSTFLD-- 374 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE-cCC-CEEEEECCCCCeEEecCCCCC--
Confidence 999876655 57888999876533333333 3443 467899999976544 445 466699998876543322211
Q ss_pred EEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 770 WCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 770 ~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
....+. +...++....++.+.+|+.
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEE
Confidence 222222 3334555555666665553
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=6.6e-10 Score=117.35 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=120.4
Q ss_pred CCCCC--CcEEEEeccCCceeeEeEEeecC---------CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCC-CceeEE
Q 003106 610 TDPRD--AGGRGMDVSQGFSFKEANSVRAS---------TSKVICCHFSSD--GKLLATGGHDKKAVLWHTDT-LKSKTN 675 (847)
Q Consensus 610 t~~~d--~~v~vwd~~~~~~~~~~~~l~~h---------~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~-~~~~~~ 675 (847)
+++.. ..+++||++.. +.+..-+.- .-.++++.|-+. ...||+++.-+.||+||... .+++..
T Consensus 166 ~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 166 TGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred cCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45555 67889999875 333332211 124678899986 78999999999999999985 567888
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|.-...+|+++...|+++.|++|..-|.+..||++........+.+..+.|++|..+|.+. ++++|+.|..|||+|+.+
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 8888889999999999999999999999999999984333445889999999999999977 778999999999999999
Q ss_pred CceEEE
Q 003106 756 GSCTRV 761 (847)
Q Consensus 756 ~~~~~~ 761 (847)
.+.++.
T Consensus 322 rkll~k 327 (412)
T KOG3881|consen 322 RKLLHK 327 (412)
T ss_pred chhhhh
Confidence 665543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=6.1e-09 Score=119.64 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=115.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
....+.+||.... ....+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+
T Consensus 182 ~~~~l~i~D~~g~----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~S 256 (433)
T PRK04922 182 MRYALQVADSDGY----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFS 256 (433)
T ss_pred ceEEEEEECCCCC----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceEC
Confidence 3456888888543 334456678889999999999999988743 46999999877653 333444556689999
Q ss_pred CCCCEEE-EEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEEee
Q 003106 690 PSMPRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~La-sgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~~~ 764 (847)
|||+.|+ +.+.+| .|++||+.+ +. +..+..+......++|+|+|+.++++...+|. |.++|+.+++..... .
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~ 333 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F 333 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c
Confidence 9999775 455555 599999987 44 44555566666789999999987766655665 666677776644332 2
Q ss_pred CCceEEEEEe--cCCCEEEEEcCCC--cEEEEcCC
Q 003106 765 ESFCCWCVNA--MNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 765 ~~~~v~~~~~--~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.........+ ++...++....++ .|.+|+..
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 2222222233 3333333333333 47778754
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=122.67 Aligned_cols=129 Identities=24% Similarity=0.366 Sum_probs=110.3
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTVR 705 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~ 705 (847)
.....+..|.+.|..|.|...|..|++|++|..|.+||..+++.+..|. +|...|.--.|-|. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456678999999999999999999999999999999999888877765 89999998889885 34789999999999
Q ss_pred EEECCCCCceE--EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 706 VWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 706 iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+=.+...+.+. ..+..|.+.|..++..|+..+-|.+|+.|+.|.-+|++.+.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC
Confidence 98887645443 34556999999999999998888999999999999998653
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=3.2e-10 Score=132.49 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=118.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~f 688 (847)
++..-+.+.+|+.... -+.. .+.+|.+.|.++.|+.||++++++|+|.+||+|++++.+... +.-+|+..|+.++|
T Consensus 150 ~gsv~~~iivW~~~~d--n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHED--NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred eccccccEEEEecccc--CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 5677788899998732 2222 688999999999999999999999999999999999988776 66799999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+|+ +|+|++.|.++++|+.+ +..+.++++|. ..++.++.+++.. +++|++.|+.|++||+..
T Consensus 227 ~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc--eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 998 89999999999999776 45677888886 4688999887754 777999999999999864
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=2.7e-08 Score=102.90 Aligned_cols=229 Identities=13% Similarity=0.131 Sum_probs=148.9
Q ss_pred eEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCC-------CCCceEEeeecCC-CCCCCCcEEEEeccCCce
Q 003106 558 LMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGS-------LDDNVESFLSHDD-TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~-------~d~~v~~~~s~d~-t~~~d~~v~vwd~~~~~~ 627 (847)
+++|.-|-.-.+.+... +||+++-.+.... +-...++ +..++..+..... .--...++-|||-...
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~--r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~-- 85 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESAS--RQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE-- 85 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhh--hccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC--
Confidence 36777776655444333 8888765332221 1111111 1223333322111 1123467889995544
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCC--CCeEEEEEcCCCCEEEEEe-CCCc
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHS--SLITDVRFSPSMPRLATSS-FDKT 703 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~--~~I~~v~fsp~~~~Lasgs-~Dg~ 703 (847)
+++.++. -..+|.+|++.+| +|++.- +++|+||... +.+.++.+.... ..+.+++-.-+..+||.-+ .-|.
T Consensus 86 -~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 -RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred -cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 4444443 5678999999865 566654 6789999987 566666665332 2344444333444555544 5789
Q ss_pred EEEEECCCCCc-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEEeeC--CceEEEEEecCC-C
Q 003106 704 VRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKVE--SFCCWCVNAMNR-P 778 (847)
Q Consensus 704 V~iWD~~~~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~~~~--~~~v~~~~~~~~-~ 778 (847)
|.|-|+..... ....+..|.+.|.||+.+-+|. ++||+|..|+ |||||..+|+.+..++.. ...++|+++... .
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 99999986322 2467789999999999999987 7789998886 799999999999999855 456899998755 4
Q ss_pred EEEEEcCCCcEEEEcCCc
Q 003106 779 CLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~ 796 (847)
.+...++.|++.||....
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 566777888999987543
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.3e-08 Score=117.04 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||.... ....+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|
T Consensus 181 ~~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC
Confidence 457778887543 34456678889999999999999988764 468999999887663 4555667788999999
Q ss_pred CCCEEE-EEeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 691 SMPRLA-TSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 691 ~~~~La-sgs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
||+.|+ +.+.++. |++||+.+ +. +..+..+.....+..|+|||+.++++...+| .|.+||+.+++....
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~-~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRS-GT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCC-Cc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 999875 5555655 77778876 33 4556666667788999999998776654444 588889877654443
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=7.2e-10 Score=119.69 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=187.9
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE--EeeecCC-----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDD-----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~--~~~s~d~-----t~~~d~~v~vw 620 (847)
.|...+..+.|...|..+++++++ -+||...+...-.+.. ++..+|- .|+...+ ++++||-+++-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-----GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-----GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-----ccccchhhhhccCCCCCcCceeccccCceeee
Confidence 444566789999999999998888 4699877765443221 1222221 1322222 78889999987
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE---ccCCC---CeEEEEEcCCCC
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNL---EEHSS---LITDVRFSPSMP 693 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~---~I~~v~fsp~~~ 693 (847)
.+......+....+..|.+.|.-++.-|+. +.|.+++.|+.|.-+|+........+ +.+.. ...+|+.+|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 766553555567778899999999999954 57999999999999999865443332 23333 467899999766
Q ss_pred -EEEEEeCCCcEEEEECCCCCce-----EEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--C---
Q 003106 694 -RLATSSFDKTVRVWDADNPGYS-----LRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G--- 756 (847)
Q Consensus 694 -~Lasgs~Dg~V~iWD~~~~~~~-----~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~--- 756 (847)
.|++++.|-.+||||.+.-.+. +..|.. ....|++++|+.++..+|++-. |-.|+++.-.- |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEP 373 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEeccccccCCCC
Confidence 7899999999999999852211 222222 2346999999988888885554 66788884332 2
Q ss_pred -------ceE-EEEeeCCc--eEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 757 -------SCT-RVFKVESF--CCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 757 -------~~~-~~~~~~~~--~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
..+ .++++|.. .|.++.|.+ ..+|.+|++.|.|.+|+........+.. +... ++-.+.-++
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me----gDr~---VVNCLEpHP 446 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME----GDRH---VVNCLEPHP 446 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----cccc---eEeccCCCC
Confidence 122 23777754 467777776 6789999999999999965332211111 1111 111222233
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
.-.+|++.+-|.-|+||.-
T Consensus 447 -~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 447 -HLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -CCchhhccCCccceeeecC
Confidence 3467999999999999975
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=122.10 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=132.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEc-------------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSKTNLE------------- 677 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~vwd~~~~~~~~~l~------------- 677 (847)
+..|.||.+.++ .++..+.+|...++.+.+.+.. .++++++.||+|++||...+..++++.
T Consensus 36 ~~~V~VyS~~Tg---~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~ 112 (792)
T KOG1963|consen 36 GNFVKVYSTATG---ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPA 112 (792)
T ss_pred CCEEEEEecchH---hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechh
Confidence 457888888877 5666899999999999999844 478899999999999976554433310
Q ss_pred --------------------------------------------------------------------------------
Q 003106 678 -------------------------------------------------------------------------------- 677 (847)
Q Consensus 678 -------------------------------------------------------------------------------- 677 (847)
T Consensus 113 ~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~ 192 (792)
T KOG1963|consen 113 QADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT 192 (792)
T ss_pred HhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc
Confidence
Q ss_pred ----------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CCceEEEeccCCCCeEEEEEecCCCeEEEEEeC
Q 003106 678 ----------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 678 ----------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~---~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~ 744 (847)
.|.-.++|+++||+++++|+|..||.|.+|.--. .......+.-|.+.|++++|+++|.+++ +|+.
T Consensus 193 ~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~ 271 (792)
T KOG1963|consen 193 KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGR 271 (792)
T ss_pred eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe-eccc
Confidence 1444678999999999999999999999995432 2344567778999999999999999665 9999
Q ss_pred CCcEEEEECCCCceEEEEeeCCceEEEEE-ecCCCEEEEEcCCCcEEEEcC
Q 003106 745 DGEIRYWSINNGSCTRVFKVESFCCWCVN-AMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 745 Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~~g~i~i~d~ 794 (847)
+|.+.+|.+.+++ ...+..-...+..+. ..+...+....+|..|.+...
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 9999999999998 333443344444433 334444455666777776653
No 225
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=4.7e-10 Score=125.79 Aligned_cols=200 Identities=17% Similarity=0.223 Sum_probs=138.4
Q ss_pred CcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~ 627 (847)
....+.++|.|+.++.++.. .+.|+++.-....+-+.+. .....-.-|..+.. .........+|++.....
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45567888888877666554 4456555433222211110 00000111211111 122233445788776644
Q ss_pred eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
-.....+.+|...|+++.|++ ....|++++.|..|..||+++ ...+..+..-...-..|+|+-....+.+.+..+.|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 455566789999999999999 456899999999999999985 345555555455668899998766666677778899
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|||.+.+...+..+++|...|++++|.......+.+++.||+|++||....
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999888999999999999999998765556669999999999998754
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.12 E-value=1.3e-08 Score=105.24 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=109.4
Q ss_pred CCcceEEEecCCCeEeecCCCeEEeCC-CCchhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEEeccCCc
Q 003106 554 TSKPLMMFGTDGAGTLTSPSNQLWDDK-DLELRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~~iWD~~-~~~~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vwd~~~~~ 626 (847)
..+..+++.+|--.++..+...+|... +.+....++... -.+.+++...... -+..-|.|.|.|+...
T Consensus 95 ~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~----NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~- 169 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRS----NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST- 169 (346)
T ss_pred cceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeeccc----CCCceEeecCCCCceEEEcCCCccceEEEEEhhhc-
Confidence 345667777665555556666777765 333333222221 0111222211111 2344588999998765
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-AVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.......+.+|...|.|++++-+|.+|||+|..|+ |||||..+++.+.+++.. ...|.||+|+|+..+||++|+.||
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 22234678999999999999999999999999998 599999999999998743 356999999999999999999999
Q ss_pred EEEEECCC
Q 003106 704 VRVWDADN 711 (847)
Q Consensus 704 V~iWD~~~ 711 (847)
|+||.++.
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99999976
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.3e-08 Score=113.24 Aligned_cols=214 Identities=16% Similarity=0.099 Sum_probs=127.8
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
....+.+||.... ....+..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +......+.+++|+
T Consensus 177 ~~~~l~~~d~dg~----~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~S 251 (429)
T PRK03629 177 FPYELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFS 251 (429)
T ss_pred cceeEEEEcCCCC----CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEEC
Confidence 3556788887654 22334456778999999999999987653 4579999998876433 22333445678999
Q ss_pred CCCCEEEEE-eCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCceEEEEee
Q 003106 690 PSMPRLATS-SFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Lasg-s~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~~~~ 764 (847)
|||+.|+.. +.+| .|++||+++ +.. ..+..+...+....|+|+|+.++++...++...|| |+.+++.. .+..
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~t-g~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~ 328 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW 328 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec
Confidence 999988765 4455 589999987 443 34444555678899999999877666555555555 67666543 3332
Q ss_pred CCceEEEEEe--cCCCEEEEEcCCC--cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe--
Q 003106 765 ESFCCWCVNA--MNRPCLWDKLDAG--DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS-- 838 (847)
Q Consensus 765 ~~~~v~~~~~--~~~~~l~~~~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~-- 838 (847)
......+..+ ++...++....++ .|.+|+........+.. . .......|+ + ++.+|+.++.|+.
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~----~~~~~p~~S----p-DG~~i~~~s~~~~~~ 398 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-T----FLDETPSIA----P-NGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-C----CCCCCceEC----C-CCCEEEEEEcCCCce
Confidence 2222222332 3333334444333 36666644322221111 1 111122333 3 6777777777764
Q ss_pred -EEEEEc
Q 003106 839 -LSSFIA 844 (847)
Q Consensus 839 -V~vW~~ 844 (847)
+.+|++
T Consensus 399 ~l~~~~~ 405 (429)
T PRK03629 399 VLNLVST 405 (429)
T ss_pred EEEEEEC
Confidence 455554
No 228
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=3.4e-10 Score=137.29 Aligned_cols=181 Identities=23% Similarity=0.331 Sum_probs=141.9
Q ss_pred ceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 003106 600 NVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 674 (847)
Q Consensus 600 ~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~ 674 (847)
+|+.+.++.. +++.||.|++|....+...-+.++. + ..+|+.+.|+..|+.+..+..||.+.+|.+. .++..
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 4444444433 8999999999999877433333332 2 3899999999999999999999999999987 66777
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
..+.|.....+++|-. ..+++++ +++.|.+||..-+......-++|.+.++++++.|... +|++|+.+|.|++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCcEEEe
Confidence 7889999999999985 5677764 5788999998754433333378999999999999976 66799999999999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
|++..+.++.|.. .+....+..+...|.++||+..
T Consensus 2364 D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcc
Confidence 9998888777765 2245566778888888888854
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.1e-08 Score=117.22 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=112.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||.... ....+..+...|.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+.+++|+|
T Consensus 175 ~~~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP 249 (427)
T ss_pred ccEEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence 345666666432 333455678889999999999999887753 359999999887643 333445677899999
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCceEEEE-eeCC
Q 003106 691 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KVES 766 (847)
Q Consensus 691 ~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~--~~~~~~~~~-~~~~ 766 (847)
||+.|+ +.+.+|...||.++..+..+..+..+...+.+..|+|||+.+++++..+|...||.+ .+++..... .+..
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 999886 567788877776543233455666666667788999999988766655677777755 444433222 2211
Q ss_pred ceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.....+..++...++....++ .|.+|+..
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 111223333333344443433 47777754
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=6.1e-09 Score=119.34 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=91.1
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++. ... +....+.+.+.+|+|||+.|+ +.+.|+...||.+ .++. ...+..+...+.+..|+|||
T Consensus 221 ~I~~~dl~~g~-~~~---l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 221 VVYVHDLATGR-RRV---VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEEECCCCC-EEE---eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCC
Confidence 46778887662 222 223345567899999999886 5677887666654 4443 45565666667788999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 693 PRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 693 ~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
+.|+..+. +|...||.++..+.....+..+.......+|+|+|+.+++++..++ .|.+||+.+++....
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 98876654 5666777654222222222222334456899999997765544333 699999998875443
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.6e-08 Score=114.16 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+..+.+ .+.+++|+|||+.|+.. +.+| .|++||+++++... +..+...+....|+|||
T Consensus 224 ~i~i~dl~~G-~~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG 298 (429)
T PRK03629 224 ALVIQTLANG-AVRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS 298 (429)
T ss_pred EEEEEECCCC-CeEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC
Confidence 4566777665 2333333333 34568999999988865 4455 58899998877654 44445567899999999
Q ss_pred CEEEEEeC-CCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceE
Q 003106 693 PRLATSSF-DKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCT 759 (847)
Q Consensus 693 ~~Lasgs~-Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~ 759 (847)
+.|+.++. ++...|| |+.+ +. ...+..+...+.+++|+|+|+.+++++..+ ..|.+||+.+++..
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 98877765 4454555 6654 32 334444444567799999999877665544 35888999888644
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=1.3e-08 Score=103.41 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=89.2
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECC-CCceeEEEcc-CCCCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 003106 642 ICCHFSSDGKLLATGGH---D-------KKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSMPRLATS--SFDKTVRVW 707 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~---D-------g~V~vwd~~-~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasg--s~Dg~V~iW 707 (847)
..+.|+++|++|+.-.. | +...||.++ ....+..+.- ..+.|.+++|+|+++.||++ ..++.|.||
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 1 335556553 2333444432 34569999999999987654 357899999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
|++ ...+..+. ...+..|.|+|+|+.++++|. ..|.|.+||+++.+++..+.... +..+.++++.
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--ATDVEWSPDG 155 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--EEEEEEcCCC
Confidence 997 45556653 467889999999997665442 24779999999888887776443 3445544433
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=9e-09 Score=120.59 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=145.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~ 713 (847)
.+.|....+.-+.+.++.++.+..|.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 445555666678889999999999999999877776665432221 1123346666689999999999999997533
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEeeCCceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKVESFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
... .+.||.+.|.++.|+-+|. +++++|.|.++|+|++.+.+... +.-+|...++.+.+.+. .+.+..++...++|
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW 243 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVW 243 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEE
Confidence 333 6789999999999999987 56699999999999999988666 66678888887777666 88999999999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+... ..+..... .....+|.+.... +...++|++.||.+++|+.
T Consensus 244 ~~~~---~~l~~y~~----h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 244 GVNG---TQLEVYDE----HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred eccc---ceehhhhh----hhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence 5332 11221111 1122356655444 5778999999999999986
No 234
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.02 E-value=8e-09 Score=112.54 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=125.8
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEeccCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
.++.....+..+.||++.+.+...++- ..++. +.+.+ +.-+.+|+ +.+.||.|++|.-..-
T Consensus 71 ~g~~~d~~~i~s~DGkf~il~k~~rVE--------~sv~A------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 71 GGKGSDTLLICSNDGRFVILNKSARVE--------RSISA------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred CCCCcceEEEEcCCceEEEecccchhh--------hhhhh------hhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 334444566667888877665554441 11110 11111 11233444 7889999999985432
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
...++......|+|++|.|+.+.++.|-. +.+.|=-+.....+-..+.|.+-|.|++|++..+.|++|+.|...+
T Consensus 137 ----LRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 137 ----LRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK 211 (737)
T ss_pred ----HHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence 22334456778999999998776666543 4566666665556667889999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|||.. +..+.+-..|.-+|++|+|.|+ + +++.++. +++|+=..+.|.
T Consensus 212 vWD~~--G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~GS 258 (737)
T KOG1524|consen 212 IWDAQ--GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVGS 258 (737)
T ss_pred eeccc--CcccccCChhccceeeeeeccc-c-ceeeeee-eeeeecCCCccc
Confidence 99987 5667777789999999999999 3 4546664 467755555444
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.01 E-value=7e-08 Score=107.78 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=130.8
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
..+.|..+.+....+....+ ......+++|+ ..++|+.+.++|+.+. +.+.+++.. ....++++++|
T Consensus 18 v~viD~~t~~~~~~i~~~~~-----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G-~~~~~i~~s~D 88 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGA-----PHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG-GNPRGIAVSPD 88 (369)
T ss_dssp EEEEETTT-SEEEEEE-STT-----EEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-SEEEEEEE--T
T ss_pred EEEEECCCCeEEEEEcCCCC-----ceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-CCcceEEEcCC
Confidence 36678777766655432211 11222344444 3456899999999987 455555543 34678999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceeEEEccC-------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEEec
Q 003106 650 GKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 650 g~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-------~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|++|++++ .++.|.|+|.++.+.+..+... ...+..|..++....++..-. -+.|.+-|.........+..
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99998776 5899999999999999887643 346788888998886665554 47888889877444444444
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCCEEEEEcCCCc
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
..........|+|++++++++...++.|-++|.++++.+..+... ......+-......+|.....+.
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 456678889999999988877777889999999999887766542 22333444344455666555444
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.2e-08 Score=105.98 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=142.7
Q ss_pred CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCC--CcEEEEECCCCceeEEEcc-------
Q 003106 610 TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSS-DGKLLATGGHD--KKAVLWHTDTLKSKTNLEE------- 678 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~D--g~V~vwd~~~~~~~~~l~~------- 678 (847)
++..+|.+.+|....+.. ...+..+..+ ..+..|.-++ +..++++||.. ..++|||++..+.+..-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG 198 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc
Confidence 456778889999885521 1223333333 5677777777 44566779988 8899999997755443221
Q ss_pred --CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 679 --HSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 679 --h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
-.-+++++.|-+. ...||+++.-+.||+||.+....++..|.--...|+++...|++. ++++|..-|.|..||++
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLR 277 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheeccc
Confidence 1235789999987 779999999999999999988888999988888999999999987 45688889999999999
Q ss_pred CCceEEE-EeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCc
Q 003106 755 NGSCTRV-FKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 755 ~~~~~~~-~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~ 796 (847)
.++.... |++-.+.+.++...+. ..+..+.-|+.++|+|...
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9987766 7777888888876665 5777888899999999653
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=4e-08 Score=113.02 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=94.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.+||+.++. . ..+..+.+.+.+.+|+|||+.|+ +.+.++. |++||++++.. ..+..+...+.+..|+||
T Consensus 226 ~~i~~~dl~~g~-~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQ-R---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD 300 (435)
T ss_pred CEEEEEECCCCc-E---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC
Confidence 467788887762 2 23445566788999999999875 5555655 77789887765 446666666788999999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCc
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 757 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~ 757 (847)
|+.|+.++. +| .|++||+.. +. ...+..+...+....|+|+|+.++++.... ..|.+||+.++.
T Consensus 301 G~~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 301 GSQIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCEEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 998887764 33 588888775 33 333433455677789999999777555333 368888886554
No 238
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=4.1e-09 Score=112.08 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred EEEcCCCCEEEE---EeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 644 CHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 644 l~fspdg~~Las---gs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
+.|..+...+.. ++++..+.+|.+..+.. ..+-+|-+.+++|+|+||+.+|+++..|..|||-........-..+.
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl 191 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL 191 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence 344444444443 34555666666665444 34558999999999999999999999999999988876333334457
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
||+..|..++.-++ ++|++++.|++|++||+++|++++++..
T Consensus 192 GH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 192 GHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 89999999999877 3567999999999999999999877764
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=2e-07 Score=107.12 Aligned_cols=173 Identities=19% Similarity=0.171 Sum_probs=111.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.++|...+ ....+..+...+...+|+|||+.|+..+.+ ..|.+||+++++... +....+.+.+.+|+|||
T Consensus 180 ~l~~~d~~g~----~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA----RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC----CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 4666777644 234455677889999999999999877654 368999998876543 33344456679999999
Q ss_pred CEEE-EEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEe-eCC
Q 003106 693 PRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-VES 766 (847)
Q Consensus 693 ~~La-sgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~-~~~ 766 (847)
+.|+ +.+.+| .|++||+.+ +. +..+..+...+....|+|+|+.++++...+| .|.+||+.+++...... ...
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred CEEEEEEccCCCceEEEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 9886 444455 588889987 43 3445556666778899999998876665554 57777888777543322 211
Q ss_pred ceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.....+..++...++....++ .|.++|..
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 112223333333444443344 35556644
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.97 E-value=1.4e-07 Score=107.73 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
.....+.++|.... ....+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|
T Consensus 167 ~~~~~l~~~d~~g~----~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 167 SRRYELQVADYDGA----NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred CCcceEEEEcCCCC----CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 34556777776533 234455677789999999999999988754 479999999876543 3345566778999
Q ss_pred cCCCCEEEE-EeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEe
Q 003106 689 SPSMPRLAT-SSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK 763 (847)
Q Consensus 689 sp~~~~Las-gs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~ 763 (847)
+||++.|+. .+.++ .|++||+.+ +. ...+..+...+....|+|+|++++++...++ .|.+||+.+++... +.
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~ 318 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDG-KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT 318 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCC-CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 999997764 44444 588899886 33 3445455555667899999998776655444 57788888776443 33
Q ss_pred eCCceEEEEEec-CCCEEE-EEcCCC--cEEEEcCC
Q 003106 764 VESFCCWCVNAM-NRPCLW-DKLDAG--DIQISDSL 795 (847)
Q Consensus 764 ~~~~~v~~~~~~-~~~~l~-~~~~~g--~i~i~d~~ 795 (847)
.+...+....+. +...++ .....+ .|.+++..
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 233333333333 223333 333332 46666654
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.6e-08 Score=111.67 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=95.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||+.++ ..+.+ ..+.+.+.+++|+|||+.|+ +.+.+| .|++||+.+++. ..+..+......++|+|
T Consensus 227 ~~~l~~~dl~~g-~~~~l---~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATG-QRELV---ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP 301 (433)
T ss_pred CcEEEEEECCCC-CEEEe---ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC
Confidence 457899999877 22333 33444556889999999775 445555 599999988765 44555655667899999
Q ss_pred CCCEEEEEeC-CCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceE
Q 003106 691 SMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs~-Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~ 759 (847)
||+.|+.++. +|. |+++|+.+ +. ...+..+......++|+|+|+.++++...++ .|.+||+.+++..
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 9998887764 455 66667765 33 2222223344557899999997776554333 6999999888755
No 242
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=7.7e-09 Score=103.98 Aligned_cols=144 Identities=17% Similarity=0.301 Sum_probs=96.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
.+..|+.+.+++.++- +.....+..-...-.+.++...+++|.++.. -+..++|+++..+.+..-+.-...|+
T Consensus 106 ~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 106 IGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred ecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccch
Confidence 4667788888887652 2222222221222223333345555555432 13455666654333222222234499
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+++-+|.-. .+++|+.||.|-|||.++...++..++.|+..++.|-|||....-|++|+.||.+..||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999755 55778899999999999977777888999999999999998766666999999999999876
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=1e-08 Score=106.73 Aligned_cols=126 Identities=21% Similarity=0.360 Sum_probs=96.4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---------------------------------------EE--CC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL---------------------------------------WH--TD 668 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~v---------------------------------------wd--~~ 668 (847)
..+....|...|..+-|+...+.+++.+.|+.+.- -. ..
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 34445567777777777776667776666643221 11 11
Q ss_pred CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 669 ~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
...++.++.+|.+.|+++.|.+....|++|..|..|.+||+--.......+.+|...|..+...+.-.. +++++.||.|
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i 264 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGI 264 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-eeeccCCCeE
Confidence 233556678999999999999999999999999999999998766677888899999999988877654 4599999999
Q ss_pred EEEECCCC
Q 003106 749 RYWSINNG 756 (847)
Q Consensus 749 ~iWD~~~~ 756 (847)
.+||++..
T Consensus 265 ~~w~mn~~ 272 (404)
T KOG1409|consen 265 VVWNMNVK 272 (404)
T ss_pred EEEeccce
Confidence 99999754
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.3e-07 Score=105.60 Aligned_cols=139 Identities=21% Similarity=0.226 Sum_probs=95.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.++|.... ....+..+...+.+.+|+|||+.|+..+.+ + .|++||+.+++... +..........+|+||
T Consensus 198 ~~l~i~d~dG~----~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDGY----NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCCC----CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence 45566676543 223455667789999999999999877543 2 58889998776532 3222334557899999
Q ss_pred CCEEEE-EeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEE
Q 003106 692 MPRLAT-SSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTR 760 (847)
Q Consensus 692 ~~~Las-gs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~ 760 (847)
|+.|+. .+.+|. |++||+.+ +. +..+..+...+...+|+|||+.++++...++. |.++|+.+++...
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~t-g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIAT-KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 998765 556665 77778876 33 44555566667889999999988777665554 6666887776543
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.91 E-value=5e-08 Score=99.84 Aligned_cols=206 Identities=14% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCceeEEEccCC------CC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SL 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~------~~ 682 (847)
+-|.+.++++..............-+..+..+.|+- +|. .|+-+..+|.|.+|..........|++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 445666676665422221222233455677777764 555 56666778999999876444433443211 12
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceE
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT 759 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~ 759 (847)
..++.|++.+..++++..+|.+.+-+... ... +.+++.|.-.++...|+....+++++|+.|+.+..||+| .++++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 46889999999999999999999666554 232 347889999999999998888899999999999999999 34444
Q ss_pred EE-EeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 760 RV-FKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 760 ~~-~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
.. .+.|...|.++... ....+++|+.+..|++||.+.....++... +...+|.+..++..
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEI 265 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchh
Confidence 43 55677778777644 346899999999999999876555544332 22456776665543
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=105.75 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=93.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCceEEEecc
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~ 721 (847)
-++|+|+|++||+++.- .+.|-|.++.+....|.. -+.|.-|.|..|..+++++ ..|+.|.+|++..+ +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46899999999999865 889999988877665543 4567889999988877655 56889999999984 44555666
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
..+.+.+++|+|+|+.+|.+...|-.|.||.+.+.++..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 778899999999999999999999999999998876543
No 247
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.91 E-value=1.9e-09 Score=115.79 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=148.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.-..+.|+.+|+.|+.|+..|.|-.+|..++.+...+.. ...|.++.|-.+..+||++- ...++|||-. +..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 345788999999999999999999999999998887753 34588999988777776664 6789999976 5677777
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~ 798 (847)
+.| ..|..+.|-|. .+||++++..|.++.-|+.+|+.+..+....+.+..+.-.+. ..+-.|..+|.|.+|......
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 766 46999999998 468889999999999999999999999887777776665443 456688899999999854322
Q ss_pred c--eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 799 A--NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 799 ~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
. .+.|. ...+.+ ++..+ .+.+++|.+.|..|+|||+..|
T Consensus 285 PLvKiLcH-----~g~V~s----iAv~~-~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 285 PLVKILCH-----RGPVSS----IAVDR-GGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred hHHHHHhc-----CCCcce----EEECC-CCcEEeecccccceeEeeeccc
Confidence 1 12222 222222 23233 6899999999999999999765
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=2.4e-07 Score=103.56 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=119.8
Q ss_pred CEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 651 KLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 651 ~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
+++ ++-..++.|.|.|.++.+.+.++......-..+.|+||++++++++.||.|.++|+.+ .+.+.++... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceE
Confidence 344 4555789999999999999999986655445678999999999999999999999998 6778777643 457889
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------ceEEEEEe-cCC-CEEEEEcCCCcEEEEcCCcccce
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------FCCWCVNA-MNR-PCLWDKLDAGDIQISDSLFINAN 800 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------~~v~~~~~-~~~-~~l~~~~~~g~i~i~d~~~~~~~ 800 (847)
++++||+++++++-.++.|.|+|.++.+.++.+.... ..+..+.. ... ..+++..+.+.|.+.|.......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998888889999999999999988876432 23333332 233 35667777888888774433221
Q ss_pred eeecccccCCCCccccccccccccCCCcEEEE-EeCCCeEEEEEccC
Q 003106 801 IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT-GCGDSSLSSFIAGT 846 (847)
Q Consensus 801 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s-Gs~DG~V~vW~~gt 846 (847)
...... .........|+ + +++++++ ...+..|.++|..+
T Consensus 164 ~~~~i~--~g~~~~D~~~d----p-dgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 164 KVTTIK--VGRFPHDGGFD----P-DGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp EEEEEE----TTEEEEEE-----T-TSSEEEEEEGGGTEEEEEETTT
T ss_pred ceeeec--ccccccccccC----c-ccceeeecccccceeEEEeecc
Confidence 111111 11112222333 3 4555444 45666787877654
No 249
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=3.1e-07 Score=92.93 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=110.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeE-EEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKT-NLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~-~l~~h~~~I~~v 686 (847)
.+..|.++++++++.+ ..+...... .-.+.++++++|++++++.++...|.+|.++. ...++ .+...++.-.+.
T Consensus 133 i~sndht~k~~~~~~~-s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGD-SNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred eccCCcceeEEEEecC-cccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 5667888888888766 222222211 12388999999999999999999999998873 33334 223344556789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe----ccCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCceEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~----~~h~~~V~sl~fsp~g~~-ll~s~s~Dg~V~iWD~~~~~~~~~ 761 (847)
.|+.....+|++..||++.|||+|..+.+..+. ..|.+.|..+.|++.|.. ||+....-+.+.|.|+|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 999999999999999999999999855443332 358999999999986542 444455568999999999875554
Q ss_pred Ee
Q 003106 762 FK 763 (847)
Q Consensus 762 ~~ 763 (847)
+.
T Consensus 290 I~ 291 (344)
T KOG4532|consen 290 IV 291 (344)
T ss_pred Ee
Confidence 44
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=2.5e-07 Score=95.89 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=120.2
Q ss_pred eEEEecCCCeEeecCCCeE--EeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeE
Q 003106 558 LMMFGTDGAGTLTSPSNQL--WDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~~i--WD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+|||+|++++..+..++ =|..+.++..-+. .+|+.+.+-.+.|. ....++.|.+|++.-. +-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EW 83 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH------HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---ee
Confidence 6689999999988776654 4555554433211 02222222222222 3456789999999865 34
Q ss_pred eEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-C-------
Q 003106 631 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D------- 701 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-D------- 701 (847)
...+......+..++|+|||+ +|.+...|-.|.||.+.+.+... +.--+..+..++|++||++.+.++. |
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 456777888999999999996 55666779999999998766543 3333445688889999888776653 2
Q ss_pred ----------------------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 702 ----------------------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 702 ----------------------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
..+.|||.-- ...+..+. ..-.+..++|+|.+. +++.|+.|+.+||.+-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-eykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-EYKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNH 239 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-hheeeeee-eccceeEEEeccccc-eEEeeccchhhhhhce
Confidence 1223333321 11122222 234688999999876 7789999999998775
Q ss_pred CC
Q 003106 754 NN 755 (847)
Q Consensus 754 ~~ 755 (847)
-+
T Consensus 240 ~t 241 (447)
T KOG4497|consen 240 FT 241 (447)
T ss_pred ee
Confidence 43
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=3.2e-07 Score=104.94 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=95.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLW--HTDT-LKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vw--d~~~-~~~~~~l~~h~~~I~~v~f 688 (847)
.+..+.+|++..+...+.......+.+.+...+|+|||+.|+..+ .+|...|| +++. +.....+..+...+.+..|
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 344555677765311122222223334456789999999888766 46655555 4442 3334555555567789999
Q ss_pred cCCCCEEEEEeCC---CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEEEe
Q 003106 689 SPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 689 sp~~~~Lasgs~D---g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~~~ 763 (847)
+|||+.|+..+.+ ..|.+||+.+ +.. ..+......+....|+|||+.+++++.. +..|.+||+.+++......
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 9999988876543 3699999987 443 3333334457789999999988766654 3568888998877554443
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=5.5e-07 Score=103.49 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=100.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+. ...+.+.+.+|+|||++|+. .+.++ .|++||+++++.. .+..+...+....|+||+
T Consensus 224 ~l~~~~l~~g-~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 224 RIFVQNLDTG-RREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred EEEEEECCCC-CEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCC
Confidence 4566777665 222222 23344557899999998874 44455 5888899877654 455566667788999999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCCc
Q 003106 693 PRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 693 ~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|+..+. ++ .|++||+.+ +.... +...........|+|+|+.++++...++ .|.+||+.+++..........
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~-g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~ 376 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNG-GRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLD 376 (430)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCC
Confidence 98876653 33 577778876 33322 2212233446789999998776655444 588899998765332222111
Q ss_pred eEEEEEecCCCEEEEEcCCCc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~ 788 (847)
.-..++.++...++....++.
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~ 397 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGR 397 (430)
T ss_pred CCceECCCCCEEEEEEecCCc
Confidence 112333334444455544443
No 253
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.3e-07 Score=99.27 Aligned_cols=190 Identities=14% Similarity=0.246 Sum_probs=128.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCce
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
+..+.-++|++.-..||++..|-.|++||-.. ++...++. ....|+|++|.|.+ +.|+.|+. +.|.||........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34577889998767788999999999999776 44455543 34679999999975 46777774 55999987642211
Q ss_pred -------------EEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEE
Q 003106 716 -------------LRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCL 780 (847)
Q Consensus 716 -------------~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 780 (847)
+....+| ..|+++.|.+||..++ +++ .|..|+|||+.++.++.........+.-+.+. +..++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~-tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILV-TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEe-ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 2223455 6799999999998665 555 57899999999998776653333344444443 55688
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccc-cCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGW-YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
++..-++..++|..... .....+ .+...+...+|+ +|...+|++.++.-.|
T Consensus 254 faAt~davfrlw~e~q~----wt~erw~lgsgrvqtacWs----pcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQS----WTKERWILGSGRVQTACWS----PCGSFLLFACSGSPRL 305 (445)
T ss_pred EEecccceeeeehhccc----ceecceeccCCceeeeeec----CCCCEEEEEEcCCceE
Confidence 88999999999953211 111111 233466777888 5656666666655443
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.7e-07 Score=103.44 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=129.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-- 720 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-- 720 (847)
+++++.-..-|++++....|+-++++.|..+.-|....+.|++|.+++...+|++|+.||.|-+||.++ ...+.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeecc
Confidence 455555334455555556788899999999999988889999999999998999999999999999998 44444442
Q ss_pred ----cCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCC---CEEEEEcCCC
Q 003106 721 ----GHS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNR---PCLWDKLDAG 787 (847)
Q Consensus 721 ----~h~-----~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~---~~l~~~~~~g 787 (847)
.|. ..|++|.|+.+|= -++.|..+|.|.|||+++.+.+..-... ...+..+.+... ..| ...+..
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v-~S~Dk~ 294 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV-VSMDKR 294 (703)
T ss_pred cccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE-EecchH
Confidence 122 2499999998865 5668999999999999998876655433 334555554322 333 334556
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+++||.......... ..++ ..+-.|.-|+.++|+++-.++.+-.|-
T Consensus 295 ~~kiWd~~~Gk~~asi--------Ept~-~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASI--------EPTS-DLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred HhhhcccccCCceeec--------cccC-CcCceeeecCCceEEEecCCCcceeEE
Confidence 6888885532221110 1111 123345566888999998888776553
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.78 E-value=3.5e-06 Score=93.84 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=140.2
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CceeEE---Ec---------
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LKSKTN---LE--------- 677 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~~~~~---l~--------- 677 (847)
..+.|..|++... ..++.+..........+.+++++++++|+++.. +|.|.+|+++. +.+... +.
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 5667777777664 377777777656667788999999999999875 89999999986 443332 21
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEE---Ee-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR---TF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~---~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.......++.|+|++++|++... ...|++|+++.....+. .+ .........++|+|+++++++.+..+++|.+|
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 12345789999999999887763 55799999987432221 22 23456688999999999998899899999999
Q ss_pred ECC--CCce--EEEEeeC------CceEEEEEec-CCCEEE-EEcCCCcEEEEcCCcccceee-ecccccCCCCcccccc
Q 003106 752 SIN--NGSC--TRVFKVE------SFCCWCVNAM-NRPCLW-DKLDAGDIQISDSLFINANIF-CGLGWYGSDEIPAPSW 818 (847)
Q Consensus 752 D~~--~~~~--~~~~~~~------~~~v~~~~~~-~~~~l~-~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~w 818 (847)
++. ++.. +..+... ......+... +...+| +......|.+|+.......+. ......+... .+
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~----Pr 295 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF----PR 295 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS----EE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC----cc
Confidence 998 4432 2222211 1123344443 333444 445566688887532211111 1111111111 23
Q ss_pred ccccccCCCcEEEEE-eCCCeEEEEEcc
Q 003106 819 KVSCRSCRECCLYTG-CGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~~l~sG-s~DG~V~vW~~g 845 (847)
++...+ ++++|+++ -.++.|.+|++.
T Consensus 296 ~~~~s~-~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSP-DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeC-CCCEEEEEecCCCeEEEEEEe
Confidence 344444 45665555 577899999863
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.74 E-value=1.3e-07 Score=98.68 Aligned_cols=85 Identities=16% Similarity=0.408 Sum_probs=75.7
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
....+.++.+|.+.|+|++|.+...+|++|..|..|.+||+.-. .....+.+|...|..+...+--+.|++++.||.|-
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 45688899999999999999999999999999999999999743 34456779999999999888888999999999999
Q ss_pred EEECCC
Q 003106 706 VWDADN 711 (847)
Q Consensus 706 iWD~~~ 711 (847)
+||.+.
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999864
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=9.9e-07 Score=101.63 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+..+. +...+.+|+|||+.|+. .+.++. |++||+++++. ..+..+...+...+|+||+
T Consensus 243 ~L~~~dl~tg-~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 243 EIFVQDIYTQ-VREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCCC-CeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCC
Confidence 3556676665 222333232 33447899999998765 456665 77788887665 4455565667889999999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEEeeCCc
Q 003106 693 PRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 693 ~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|+..+. ++ .|+++|+.+ +... .+..........+|+|+|+.++++...++. |.++|+.+++..........
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~-g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d 395 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLAS-GKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLD 395 (448)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCC
Confidence 98876553 44 466667766 3332 222122234567999999987766655554 55578887764332221111
Q ss_pred eEEEEEecCCCEEEEEcCCCc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~ 788 (847)
.-..++.++...++....++.
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred CCceECCCCCEEEEEEecCCc
Confidence 111333344444555555544
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.6e-08 Score=108.55 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=119.5
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.+..+.+|...|+.++--.+.+.+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456789999999998888889999999999999999863 23566788999999999999998888776 79
Q ss_pred cEEEEECCCCCceEEEec--cCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCceEEEEeeC-----CceEEEEE
Q 003106 703 TVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKVE-----SFCCWCVN 773 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-----~~~v~~~~ 773 (847)
.|++||.-. +..+.... ...+.+..|..-++ ...+++.|+...+|+++|.+.++.+..++.. ...+.|++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999999865 33333111 11222333333333 3334455578899999999999877777643 34567776
Q ss_pred ec-CCCEEEEEcCCCcEEEEcCC
Q 003106 774 AM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 774 ~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
.. .+.++..+...|+|.+.|.+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecC
Confidence 43 55677788888998888865
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=8.2e-08 Score=102.34 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=78.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~ 691 (847)
....+.+|....+ ....+-+|-..+++|+|+||+++|+|+..|..|||-.....-.+..| -||+..|..++.-++
T Consensus 130 D~~~~di~s~~~~----~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 130 DVYSFDILSADSG----RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred Cceeeeeeccccc----CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 3344455555432 23345689999999999999999999999999999877644444443 489999999998865
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
. .|+++|.|++|++||+++ ++.+.++.
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred c-eeeecCCCCcEEEEeccc-CCcccccc
Confidence 4 589999999999999998 66666553
No 260
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=5e-08 Score=101.71 Aligned_cols=148 Identities=19% Similarity=0.248 Sum_probs=112.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~~~I~~ 685 (847)
.+.+..|-+.|++++. -..|. .++.|.++.|.-.+.+|+.|+..|.|.++|++.+ .+...+ -|.+.|+|
T Consensus 230 ~G~sqqv~L~nvetg~----~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGH----QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ccccceeEEEEeeccc----ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 4455667777777762 12222 5678999999998999999999999999999854 344444 58999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCCce---EEEeccCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 686 VRFSP-SMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 686 v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~---~~~~~~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+..-. ++.+|.+.+.+|+|++||.|- .++ +..+.||-..-.-+-++-+ .+.++++++.|...|||.++.|..+.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 98766 677899999999999999986 444 8899999655444444322 23366689999999999999999887
Q ss_pred EEeeC
Q 003106 761 VFKVE 765 (847)
Q Consensus 761 ~~~~~ 765 (847)
++...
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 77643
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.66 E-value=2.4e-06 Score=97.57 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=93.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.+||+.++. .+ .+..+.+.+.+++|+|||+.|+. .+.++ .|++||+.++.. ..+..+...+....|+|+
T Consensus 214 ~~i~v~d~~~g~-~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQ-RE---KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCCCC-EE---EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC
Confidence 568889988762 22 23345566778999999997764 44444 588899887654 344455555667899999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCce
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSC 758 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~~~ 758 (847)
+++|+.++. ++ .|++||+.+ +. ...+..+...+..+.|+|+++.++++. .++ .|.+||+.++..
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCCCCe
Confidence 998876654 33 577888876 33 334444556678899999998766544 443 788999987654
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.9e-06 Score=93.08 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=138.1
Q ss_pred ceEEEecCCCeE--eecCCCeEEeCCCCchhhccc------ccc-ccCCCCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 557 PLMMFGTDGAGT--LTSPSNQLWDDKDLELRADMD------RLV-EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 557 ~~v~~s~dG~~~--~~~~~~~iWD~~~~~~~~~~~------~~~-~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
+...|+.|.... ++.+...|||+.+......-- .+. ..+.-...|..+. .+..+.-..+|+|.+.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccccc
Confidence 467888888764 345566889987743322110 111 1111112222222 23566777889988763211
Q ss_pred eeEe--EEeecCCCCEEEEEEcCCCC-EE--EEEeCCC---------cEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 628 FKEA--NSVRASTSKVICCHFSSDGK-LL--ATGGHDK---------KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 628 ~~~~--~~l~~h~~~V~~l~fspdg~-~L--asgs~Dg---------~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
...+ .+| ....=..+.|++-|. +| ++...|+ ++++++++...+...+ ...++|.++.|+++++
T Consensus 207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence 1111 111 112223577887655 22 3333344 6788887733443333 3578999999999999
Q ss_pred EEEEE--eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEEEeeCCceE
Q 003106 694 RLATS--SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 694 ~Lasg--s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.|+++ -.-.+|.|||++. ..+..|. .++=+++-|+|.|..++++|-.+ |.|.|||+.+.+++..+......+
T Consensus 284 EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 77654 4577899999984 5555553 45667899999998776665543 899999999999999888877766
Q ss_pred EEEEecCCCEEEEEcC-----CCcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLD-----AGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~-----~g~i~i~d 793 (847)
...+.++...+.+.+. |..++||+
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 6665444433333322 44566776
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=3.2e-06 Score=96.77 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=89.5
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC---ceeEEEccCCCCeEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-----DKKAVLWHTDTL---KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~ 687 (847)
.|.+.++.++ ..+.+..+ .+.....+|+|||+.|+..+. |..+.+|++..+ +.......+...+...+
T Consensus 212 ~I~~~~l~~g-~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~ 287 (428)
T PRK01029 212 KIFLGSLENP-AGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS 287 (428)
T ss_pred eEEEEECCCC-CceEeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence 3455566655 22333333 344556899999998887653 223445777642 33333333334457889
Q ss_pred EcCCCCEEEEEe-CCCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEEE
Q 003106 688 FSPSMPRLATSS-FDKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVF 762 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~~ 762 (847)
|+|||+.|+..+ .+|...|| ++...+.....+..+...+....|+|||+.+++++..+ ..|.+||+.+++.....
T Consensus 288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 999999887665 46655555 44422233444555556678899999999877665543 36999999988765443
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.5e-07 Score=102.82 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----cCC
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-----~h~ 680 (847)
+++.|++|++|.+.... +..+..++..|+.+|.++.|-.|-++++++ ||-|.+||.--++.+..+. +-.
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~ 829 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAG 829 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCC
Confidence 67889999999987631 334677889999999999999998888876 7999999987666654332 122
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 681 SLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 681 ~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+.|.|+. +-+...+ +.|+...+|+++|.+..+ -+..+ .+-.+.+.+++..+.|.++ +.+-.+|.|.+.|.+
T Consensus 830 ~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~iaVa~~GN~l-Aa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 830 GNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRAIAVADKGNKL-AAALSNGCIAILDAR 906 (1034)
T ss_pred ceeEecc-cCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeEEEeccCcchh-hHHhcCCcEEEEecC
Confidence 3344443 1123334 444679999999999843 33333 2345678999999998855 466678999999999
Q ss_pred CCceEEEEeeC
Q 003106 755 NGSCTRVFKVE 765 (847)
Q Consensus 755 ~~~~~~~~~~~ 765 (847)
+|+.+..++.-
T Consensus 907 ~G~vINswrpm 917 (1034)
T KOG4190|consen 907 NGKVINSWRPM 917 (1034)
T ss_pred CCceeccCCcc
Confidence 99988877653
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=3e-07 Score=95.90 Aligned_cols=204 Identities=16% Similarity=0.228 Sum_probs=130.9
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCce-----------------------------------eEEE-ccC
Q 003106 638 TSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKS-----------------------------------KTNL-EEH 679 (847)
Q Consensus 638 ~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~-----------------------------------~~~l-~~h 679 (847)
..+|..++|.+++. .++..+.|++|++|.+..... .+.+ .+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688899998654 566777899999998752211 0111 258
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE--EeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR--TFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~--~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
..-|.+|.++.|...++++. |=.|.+|+++-...+.. .++.+ ...|++..|||...++|+-.+..|+|++.|
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 88899999999998888775 88999999875433322 23333 345889999999888888888899999999
Q ss_pred CCCCc-e---EEEEee------------CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccc---------
Q 003106 753 INNGS-C---TRVFKV------------ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGW--------- 807 (847)
Q Consensus 753 ~~~~~-~---~~~~~~------------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~--------- 807 (847)
+|... | .+.|.. --..|..+.+.....+....+--.|++||.......+.....+
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 99532 1 112221 1223455566677677677777789999965443332221111
Q ss_pred -cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 -YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 -~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+..+.+.. -+...|. .++.+++||+....+++|++
T Consensus 323 lYEnD~Ifd-KFec~~s-g~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 323 LYENDAIFD-KFECSWS-GNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred Hhhccchhh-eeEEEEc-CCcceEecccccceEEEecC
Confidence 11111100 0111111 24568999999999999983
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.61 E-value=1.7e-06 Score=90.51 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=106.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cce--eEEEccC-----CCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKS--KTNLEEH-----SSLITDVRFSPS-MPRLATSSFDKTVR 705 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~--~~~l~~h-----~~~I~~v~fsp~-~~~Lasgs~Dg~V~ 705 (847)
.+|+-.|++|.++.|...++++ +|-.|.+|+++- ... +..++.+ +..|++..|+|. .+.|+-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3688899999999999999987 588999999872 222 2223333 356899999997 45777788899999
Q ss_pred EEECCCCCceE---------------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCC---
Q 003106 706 VWDADNPGYSL---------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVES--- 766 (847)
Q Consensus 706 iWD~~~~~~~~---------------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~--- 766 (847)
+.|+|...-|. .-|.+--+.|..|.|+.+|++++ +-+. -+|++||+. ..+.+.++..|.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 99999532211 11222345688999999998655 5442 699999994 456777776552
Q ss_pred ---------ceE----EEEEecCCCEEEEEcCCCcEEEEc
Q 003106 767 ---------FCC----WCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 767 ---------~~v----~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.+| .|....++..+++|+-...+++++
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 111 222223445667777777777776
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.58 E-value=3.1e-05 Score=86.21 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=135.8
Q ss_pred CCCCcEEEEec--cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eeEEEccCCC
Q 003106 612 PRDAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSS 681 (847)
Q Consensus 612 ~~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~vwd~~~~--~--~~~~l~~h~~ 681 (847)
...+.|.+|++ .++ .+..+..+. -......|++++++++|+++.. ++.|..|++... + .+........
T Consensus 10 ~~~~gI~~~~~d~~~g-~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETG-TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp SSSTEEEEEEEETTTT-EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CCCCcEEEEEEcCCCC-CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 34466777776 444 566555533 3455677999999999999977 468999988753 3 3333433445
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEE---ec----------cCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 682 LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~---~~----------~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
....|+++|++++|+++. .+|+|.++++...+..... +. .......++.|+|++++++++.-....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 567899999999998887 4899999999875443332 11 123557899999999988876666679
Q ss_pred EEEEECCCCc--eE--EEEeeC-CceEEEEEec-CCCEEEEE-cCCCcEEEEcCCcccce--eeecccccCCCC-ccccc
Q 003106 748 IRYWSINNGS--CT--RVFKVE-SFCCWCVNAM-NRPCLWDK-LDAGDIQISDSLFINAN--IFCGLGWYGSDE-IPAPS 817 (847)
Q Consensus 748 V~iWD~~~~~--~~--~~~~~~-~~~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~-~~~~~ 817 (847)
|++|++.... .. ..+... ....+-+.+. +...+|.. ...+.|.+++....... ............ .....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999998654 32 223322 2233444444 33444444 44556777764411111 111111111110 01122
Q ss_pred cccccccCCCcE-EEEEeCCCeEEEEEc
Q 003106 818 WKVSCRSCRECC-LYTGCGDSSLSSFIA 844 (847)
Q Consensus 818 w~~~~~~~~~~~-l~sGs~DG~V~vW~~ 844 (847)
..+...+ ++++ +++...+++|.+|++
T Consensus 248 ~~i~isp-dg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 248 AEIAISP-DGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-T-TSSEEEEEECTTTEEEEEEE
T ss_pred eeEEEec-CCCEEEEEeccCCEEEEEEE
Confidence 3333444 4555 555568889999997
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.56 E-value=4.2e-07 Score=111.36 Aligned_cols=189 Identities=11% Similarity=0.158 Sum_probs=147.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
++.+-..|.++.=+|...+.+||+.||.|++|....+..+..++ .....|+.++|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 34566778899989988999999999999999999888877775 234789999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCC---ceEEEEeeCCceEEEEEecCCC-EEEEEcC
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNG---SCTRVFKVESFCCWCVNAMNRP-CLWDKLD 785 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s---~Dg~V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 785 (847)
.++......|......+.|-.. ++++++ .++.|.+||.... .++. .+|...++|+.+.+.. .+++|..
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCC
Confidence 4677788899998988998863 555654 4689999997642 2444 7888888888877654 5678999
Q ss_pred CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 786 AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 786 ~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
+|.|.+||.+-.. ....+. .|+ ...+|++|+..|.|+||++..+
T Consensus 2357 ~G~v~l~D~rqrq--l~h~~~----------~~~------~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQ--LRHTFQ----------ALD------TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHH--HHHHhh----------hhh------hhheeeccCcccceEEEEcccc
Confidence 9999999965321 111111 122 3567999999999999998643
No 269
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=1.9e-05 Score=82.65 Aligned_cols=213 Identities=16% Similarity=0.073 Sum_probs=125.8
Q ss_pred CCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
++.|..||..++. .+....- -.....+..+ .++.+|++++.++.|+.||..+|+.+..+... ..+.... ...
T Consensus 2 ~g~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGK---ELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTE---EEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEE
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eec
Confidence 5778899998873 3333321 1222332222 36677888889999999999999998887652 2221111 223
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEE-eccCC---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHS---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~h~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..+++++.|+.|+.+|.++ +..+.. ..... .....+.....+..++ .+..++.|..+|+++|+.+..+.....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY-VGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEE-EEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCC-cceeeeeccccccccccccccCceEecCEEE-EEeccCcEEEEecCCCcEEEEeecCCC
Confidence 55777777889999999998 666655 33221 1112222222355444 666689999999999999887766432
Q ss_pred e-----------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 768 C-----------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 768 ~-----------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
. ...+... ...++....++.+..+|....... .... . .. . .......+..|++++.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~~~d~~tg~~~-w~~~-~-~~--~------~~~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DGRVYVSSGDGRVVAVDLATGEKL-WSKP-I-SG--I------YSLPSVDGGTLYVTSSD 221 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TTEEEEECCTSSEEEEETTTTEEE-EEEC-S-S---E------CECEECCCTEEEEEETT
T ss_pred CCCcceeeecccccceEEE-CCEEEEEcCCCeEEEEECCCCCEE-EEec-C-CC--c------cCCceeeCCEEEEEeCC
Confidence 2 1122222 337777777776444454433211 2111 1 11 0 00012256778888899
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
+.|.+||+.|
T Consensus 222 ~~l~~~d~~t 231 (238)
T PF13360_consen 222 GRLYALDLKT 231 (238)
T ss_dssp TEEEEEETTT
T ss_pred CEEEEEECCC
Confidence 9999999876
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=3e-05 Score=97.78 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=121.7
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccC-----------------CCCeEEEEEcCC-CCEEEEEeC
Q 003106 640 KVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-----------------SSLITDVRFSPS-MPRLATSSF 700 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-----------------~~~I~~v~fsp~-~~~Lasgs~ 700 (847)
....|+|.++++.|+++. ..+.|+++|..++.. .++.+- -..-++|+|+|+ +..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457899999888766655 456899999876543 333210 012368999995 555566677
Q ss_pred CCcEEEEECCCCCceEEEeccC---------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 701 DKTVRVWDADNPGYSLRTFMGH---------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h---------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.|++||..+ +. +..+.+. ......|+|+|++++++++-+.++.|++||+.++.......+.
T Consensus 704 ~~~I~v~d~~~-g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISD-GV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCC-Ce-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 89999999986 33 2222211 1235679999999888878888899999999887533211100
Q ss_pred C---------------------ceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCC---Ccc---ccc
Q 003106 766 S---------------------FCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD---EIP---APS 817 (847)
Q Consensus 766 ~---------------------~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---~~~---~~~ 817 (847)
. .....+.++.+ ..+++...++.|.+|+........+...+..+.. ... ...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 0 01123333333 3444556677888888643222222222211100 000 111
Q ss_pred cccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 818 WKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 818 w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+...+ ++.++++-+.++.|++|++.+
T Consensus 862 ~GIavd~-dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 862 AGLALGE-NGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEEEEeC-CCCEEEEECCCCEEEEEECCC
Confidence 2222233 567888899999999999854
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.53 E-value=1.8e-05 Score=86.95 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=121.0
Q ss_pred CcceEEEecCCCeEeecCC-----CeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPS-----NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~-----~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
....+.+++||++++..+. ..+.|+.+.++..+++- .+...++...+. ....|+......+.+.-
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 3457899999999986552 27899999888776542 111222222111 11223333322222210
Q ss_pred eee--EeEEeecCCCCEEEE-EEcC-CCCEEEEEeCCCcEEEEECCC-----CceeEEEcc-------CCCCeEEEEEcC
Q 003106 627 SFK--EANSVRASTSKVICC-HFSS-DGKLLATGGHDKKAVLWHTDT-----LKSKTNLEE-------HSSLITDVRFSP 690 (847)
Q Consensus 627 ~~~--~~~~l~~h~~~V~~l-~fsp-dg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~~-------h~~~I~~v~fsp 690 (847)
... ....+..-...|..= .|.+ ||+++++... |+|.+.|+.. .+.+..+.. ..+.+.-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111 111111111111100 4455 8888887766 9999999543 333333321 223344599999
Q ss_pred CCCEEEEEe----------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceE
Q 003106 691 SMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs----------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++++|+... ..++|.++|..+ .+.+..+.- ...+..|+|++|++ .++++...++.|.|+|+.+++.+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999888743 125799999998 666666542 35799999999999 77767767899999999999999
Q ss_pred EEEe
Q 003106 760 RVFK 763 (847)
Q Consensus 760 ~~~~ 763 (847)
+.+.
T Consensus 336 ~~i~ 339 (352)
T TIGR02658 336 SSVN 339 (352)
T ss_pred eeec
Confidence 8883
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=3.3e-05 Score=97.41 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeE------Eeec------CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEAN------SVRA------STSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~------~l~~------h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l 676 (847)
+...++.|++||..++.. ..+. ...+ .-.....|+|++|++.| ++-+.++.|++||++++......
T Consensus 700 ad~~~~~I~v~d~~~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EECCCCeEEEEECCCCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 445677888999877621 1110 0011 11235579999999855 45566789999999876532111
Q ss_pred cc-------------C--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc--------------
Q 003106 677 EE-------------H--------SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-------------- 721 (847)
Q Consensus 677 ~~-------------h--------~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-------------- 721 (847)
.+ + -....+|+|+++|+.+++-..+++|++||..+ +... ++.+
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-CeEE-EEeccCCcCCCCCccccc
Confidence 00 0 01246899999999888888899999999986 4332 3322
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.-.....|+++++|. ++++.+.++.|++||+++++.
T Consensus 857 ~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCcc
Confidence 123578899999986 677888899999999998865
No 273
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=9.2e-07 Score=64.57 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 666 (847)
+++.++++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57888999999999999999999999999999999997
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=0.00014 Score=82.00 Aligned_cols=210 Identities=16% Similarity=0.023 Sum_probs=118.9
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC----C
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKV-----ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----L 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V-----~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~----~ 682 (847)
..++.+..||..++. .+..+......+ .+..+ .+..++.+..++.|..+|+++++.+........ .
T Consensus 152 ~~~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 152 TNDGRLTALDAATGE---RLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CCCCeEEEEEcCCCc---eeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 347788999998873 222222211111 11112 234778888899999999999987765431100 0
Q ss_pred ---eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 683 ---ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 683 ---I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+..+.-+| .+..+++++.+|.|+.||.++ ++.+..... . ....... .+.+++ .++.||.|..+|..+|+
T Consensus 227 ~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~--~~~~vy-v~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 227 LERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV--DDNRLY-VTDADGVVVALDRRSGS 300 (377)
T ss_pred hhhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeecc-C-CccCceE--eCCEEE-EECCCCeEEEEECCCCc
Confidence 00111111 255788888999999999998 555544431 1 1222222 344444 66789999999999998
Q ss_pred eEEEEee-CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 758 CTRVFKV-ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 758 ~~~~~~~-~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+-.+.. .......... ....++.+..+|.+.+++.... .+................ ..++.|+.++.|
T Consensus 301 ~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~sp~-------~~~~~l~v~~~d 370 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIASPPV-------VVGDGLLVQTRD 370 (377)
T ss_pred EEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCccccCCE-------EECCEEEEEeCC
Confidence 7755532 1111121111 3457888889999999985532 222221111111111110 123568899999
Q ss_pred CeEEEE
Q 003106 837 SSLSSF 842 (847)
Q Consensus 837 G~V~vW 842 (847)
|.|..|
T Consensus 371 G~l~~~ 376 (377)
T TIGR03300 371 GDLYAF 376 (377)
T ss_pred ceEEEe
Confidence 999876
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00021 Score=76.13 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=140.5
Q ss_pred CcceEEEecCCCeEeecCCC----e----EEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAGTLTSPSN----Q----LWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~----~----iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd 621 (847)
..+-+.|+++.+.+++.... . -||-+++.+.. +.+....|... ..+-+..++ +.-..+.|.++-
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-ln~~~~~g~~p--~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-LNRQTLPGSPP--CYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-eeccccCCCCC--eEEEECCCCCEEEEEEccCceEEEEE
Confidence 34577888998877765433 1 14444444322 11111111111 111112222 222347788888
Q ss_pred ccCCceeeEeEEeecCCCC----------EEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEc---cCCCCeEEEE
Q 003106 622 VSQGFSFKEANSVRASTSK----------VICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLE---EHSSLITDVR 687 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~----------V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~ 687 (847)
+...-.+.....+..|.+. +.+..|.|++++|++++- --.|.+|+++.+++...-. .....-..|.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 8653244444444456666 889999999999999853 2369999999765543211 2344568999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEEEecc---------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~---------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~- 756 (847)
|+|++++.++.+ .+++|.+|..+.....+..+.. -......|..+++|+.|.++--....|.+|.+...
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 999999987666 5999999999874333333321 23457789999999977665555568888877643
Q ss_pred ceEEE---EeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc
Q 003106 757 SCTRV---FKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 757 ~~~~~---~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
..+.. ...+..+.+.+.+. .+..+.+.-+...|.+|.......
T Consensus 278 g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 278 GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 22222 22333334444443 333344444555577776544333
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.8e-07 Score=64.97 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++++.++.+|...|++|+|+|++.+|++++.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999998
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=0.00039 Score=74.09 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCcEEEEeccC--CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CceeE--EEccCCCC----
Q 003106 613 RDAGGRGMDVSQ--GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LKSKT--NLEEHSSL---- 682 (847)
Q Consensus 613 ~d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~~~~--~l~~h~~~---- 682 (847)
.++.|..|.+.. | .+..+.........-+-++++++|++|+++.. -|.|.|+-+.. |.+.. .+..|.+.
T Consensus 62 ~~ggvaay~iD~~~G-~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~ 140 (346)
T COG2706 62 EEGGVAAYRIDPDDG-RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHE 140 (346)
T ss_pred CcCcEEEEEEcCCCC-eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCc
Confidence 356666555553 4 44555444444444588999999999999976 57899998864 43322 22345555
Q ss_pred ------eEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEE---eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 683 ------ITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 683 ------I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~---~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
+.+..|.|++++|++++. -..|.+|++.. +..... ...-......|.|||+++...+.+-.+++|.+|.
T Consensus 141 rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 141 RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred cccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence 889999999999988874 44699999985 432111 1123456788999999998888888899999999
Q ss_pred CCCC
Q 003106 753 INNG 756 (847)
Q Consensus 753 ~~~~ 756 (847)
....
T Consensus 220 y~~~ 223 (346)
T COG2706 220 YNPA 223 (346)
T ss_pred EcCC
Confidence 9873
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.8e-06 Score=90.32 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=97.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..++.++++... .....+ .-.++|.|+.|+++++-|+++-. =-+|.|||++ ++++..| ..++=+++.|+|.
T Consensus 250 Eq~Lyll~t~g~---s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 250 EQTLYLLATQGE---SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH 322 (566)
T ss_pred cceEEEEEecCc---eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC
Confidence 445566665521 222222 24789999999999988776643 4589999987 5666665 3456689999999
Q ss_pred CCEEEEEeC---CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCceEE
Q 003106 692 MPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTR 760 (847)
Q Consensus 692 ~~~Lasgs~---Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~V~iWD~~~~~~~~ 760 (847)
|++|+.++. -|.|-|||+.+ .+++..+..-. .+-++|+|||++++.+.+. |+.++||+.. |..++
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 999988775 57899999998 77787776544 3458999999977643333 7889999986 44443
No 279
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.1e-05 Score=86.13 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V 704 (847)
.++....+.+|...|++++|+|..+ +|..++-+.+|+|.|+++..++..+..+ ..|++++|+-|.. +|+.|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 4455667788999999999999776 7888999999999999999999999888 7899999998765 67888889999
Q ss_pred EEEECCCCCceEEEecc--CCCCeEEEEEe------cCCCeEEEEEeCCCcEEEEECC
Q 003106 705 RVWDADNPGYSLRTFMG--HSASVMSLDFH------PNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~--h~~~V~sl~fs------p~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.|||++.+...+..+.+ ...+|..|+.- +.|. +++.... .+.+|++.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~ 315 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIV 315 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhh
Confidence 99999986655555443 22345444432 2233 4433332 35677664
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.34 E-value=5.2e-06 Score=94.09 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=120.0
Q ss_pred CEEEEEEcCCC--CEEEEEeCCCcEEEEECC---CCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 003106 640 KVICCHFSSDG--KLLATGGHDKKAVLWHTD---TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 640 ~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~---~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~ 713 (847)
.|-++.|++.. .+-++.....+..||++. +......+.+|+..|+++.|+|... .|++++.|-.|..||++.+.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 46677888732 344444455667789876 2344556679999999999999754 77999999999999999988
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecC--CCEEEEEcCCCcEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQ 790 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~ 790 (847)
..+..+..-......|+|+.....++ +.+..+.|+|||++.|. .+..++++...+..+.+.. ...+|....++.++
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 88877766666778899998888777 44557789999999874 6778888777777777653 35789999999999
Q ss_pred EEcCC
Q 003106 791 ISDSL 795 (847)
Q Consensus 791 i~d~~ 795 (847)
.|+..
T Consensus 228 fw~y~ 232 (1081)
T KOG0309|consen 228 FWDYS 232 (1081)
T ss_pred eeccc
Confidence 99844
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=5.3e-05 Score=83.89 Aligned_cols=272 Identities=12% Similarity=0.140 Sum_probs=145.2
Q ss_pred cceEEEecCCCeEeecCC--CeEEeCCCCchhhcccc----ccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 556 KPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDR----LVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~----~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
.+.+.|||-|+++++-.- +.+|--.+......+.. ++...........|..... .......++|||+.+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 357899999999988543 36676555433322211 1221222222333322221 2334567899999999
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC--C--
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--D-- 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~--D-- 701 (847)
...+...++++....-.-..||.|++++|.-..| .|.||+..+..++..-.-.-..|....|+|.+..||--.- +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNI 371 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCC
Confidence 5544444444444444467899999999987764 6889987764443222222345666666666555443211 1
Q ss_pred -CcEE----------------------------------------------------EEECCCCCceEEEeccCCCCeEE
Q 003106 702 -KTVR----------------------------------------------------VWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 702 -g~V~----------------------------------------------------iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
.++. |+.++.....+... .-...|..
T Consensus 372 parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~ 450 (698)
T KOG2314|consen 372 PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIA 450 (698)
T ss_pred cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheee
Confidence 0111 11111111111111 12456788
Q ss_pred EEEecCCCeEEEEEeCC--CcEEEEECCC-C---ceEEEEeeCCceEEEEEecCCCE--EEE--EcCCCcEEEEcCCccc
Q 003106 729 LDFHPNKDDLICSCDGD--GEIRYWSINN-G---SCTRVFKVESFCCWCVNAMNRPC--LWD--KLDAGDIQISDSLFIN 798 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~D--g~V~iWD~~~-~---~~~~~~~~~~~~v~~~~~~~~~~--l~~--~~~~g~i~i~d~~~~~ 798 (847)
.+|.|.|..+.+..+.+ .+|.+|-+++ . +.+..|. ...+..+.+.+... +.. ++..|.+..+|..+..
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 89999998776554443 6789998874 2 2233332 23344444444332 222 2346788888876533
Q ss_pred ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 799 ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
....... .....+...|+ + .++++++++.-+..
T Consensus 529 ~k~~~~~---eh~~at~veWD----P-tGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 529 LKDTASP---EHFAATEVEWD----P-TGRYVVTSSSSWRH 561 (698)
T ss_pred hhhccCc---cccccccceEC----C-CCCEEEEeeehhhh
Confidence 2222221 12223455677 3 58889988765543
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.33 E-value=0.00027 Score=77.74 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=75.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccCC----
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS---- 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~---- 680 (847)
+.|.+.|..+. +.+.++..-..+- .+ ++||++.|+++.. +..|.|||+.+++.+.++..-.
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 88999999876 4555554333222 24 9999998887765 6789999999999998887422
Q ss_pred ---CCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCCceEEEec
Q 003106 681 ---SLITDVRFSPSMPRLATSS-F-DKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 681 ---~~I~~v~fsp~~~~Lasgs-~-Dg~V~iWD~~~~~~~~~~~~ 720 (847)
.....++++|||++|+... . +..|.|+|+.+ ++.+.++.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~ 145 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMD 145 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEe
Confidence 2234788999999998776 4 78999999998 66666664
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00028 Score=80.43 Aligned_cols=163 Identities=10% Similarity=0.057 Sum_probs=100.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
...+.+.|.... ....+.... .+...+|+|||+. ++..+.+ ..|.++|+.+++..... ...+.+.+.+|+
T Consensus 168 ~~~l~~~d~dg~----~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~S 241 (419)
T PRK04043 168 KSNIVLADYTLT----YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVS 241 (419)
T ss_pred cceEEEECCCCC----ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEEC
Confidence 445555555433 222233233 7889999999984 6654443 46899999887765443 355567788999
Q ss_pred CCCCEEEE-EeCC--CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEee
Q 003106 690 PSMPRLAT-SSFD--KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Las-gs~D--g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~ 764 (847)
|||+.|+. .+.+ ..|.++|+.+ +. ...+..+........|+|||+.++++....+ .|.++|+.+++.......
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNT-KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCC-Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 99987754 3333 4688888876 43 4444444443456789999998887776554 577778888876443332
Q ss_pred CCceEEEEEecCCCEEEEEcC
Q 003106 765 ESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 765 ~~~~v~~~~~~~~~~l~~~~~ 785 (847)
.. ....++.++...++....
T Consensus 320 g~-~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 320 GK-NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CC-cCceECCCCCEEEEEEcC
Confidence 21 122344444444555443
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=4.9e-07 Score=103.79 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC-C-cE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K-TV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D-g-~V 704 (847)
.|+...+|+.|+...+|++|+-+.++|+.|+..|.|++|++.+|.....+.+|...|+-|.-+.+|..+++.+.- . -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 567788899999999999999999999999999999999999999999999999999999999999977665543 2 47
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeC---CceEEEEEe------
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVE---SFCCWCVNA------ 774 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~---~~~v~~~~~------ 774 (847)
.+|++...+.....|.+ -.++.|+.....-++.+. ...+.|||+.++..+.++ ... ...-.+..|
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875666666653 445888866433332333 357899999998766553 221 111122222
Q ss_pred -cCCCEEEEEcCCCcEEEEcCC
Q 003106 775 -MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 775 -~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.++..+|+......|..||..
T Consensus 1245 IlndGvLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1245 ILNDGVLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred EeeCceeeeeccHHHHhhhhhh
Confidence 245667777777667777643
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=5.4e-05 Score=85.44 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=97.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCceeE--EE-ccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATG----GHDKKA----VLWHTDTLKSKT--NL-EEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg----s~Dg~V----~vwd~~~~~~~~--~l-~~h~~~ 682 (847)
..+.++-+..+ .++.+..++...++ .++.|+- +...+.|. +.+|.+ ++|++...+..+ .. ......
T Consensus 184 aNl~L~~~~~~-klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~ 261 (545)
T PF11768_consen 184 ANLHLLSCSGG-KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQ 261 (545)
T ss_pred ccEEEEEecCC-cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCc
Confidence 35566666665 66667666655554 6788887 55566654 345543 456765443221 11 146778
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|.|++++|+.+.|+.|+.||+|++||... + +..+..+.-.++.++|||+|. +|++|+.-|.|.+||+.-..
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 99999999999999999999999999987 3 333334556688999999988 66688888999999997654
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.28 E-value=0.00023 Score=75.82 Aligned_cols=188 Identities=10% Similarity=0.108 Sum_probs=130.1
Q ss_pred eEEeCCCCchhhccc-----cccccCCCCCc-eEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 575 QLWDDKDLELRADMD-----RLVEDGSLDDN-VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~-----~~~~~g~~d~~-v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
-+||..++.....+. .|...+.+... -.+|...++.....|.|-|||... .+..+..+..|.-.-..|.+.|
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcC
Confidence 356666665543221 22223333222 233455555778889999999983 5688888888888888899999
Q ss_pred CCCEEEEEeC------------------CCcEEEEECCCCceeEE--E--ccCCCCeEEEEEcCCCCEEEEEeCCCc---
Q 003106 649 DGKLLATGGH------------------DKKAVLWHTDTLKSKTN--L--EEHSSLITDVRFSPSMPRLATSSFDKT--- 703 (847)
Q Consensus 649 dg~~Lasgs~------------------Dg~V~vwd~~~~~~~~~--l--~~h~~~I~~v~fsp~~~~Lasgs~Dg~--- 703 (847)
||+.|+++.. +-.+.+.|..+++++.. + ..|...|..+++..+|..++..-+.|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 9988887631 22466667788888776 4 347788999999999987766655442
Q ss_pred ----EEEEECCCCCceEEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 704 ----VRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 704 ----V~iWD~~~~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|.+|+... .+..+ ..-...|-+|+|+.++..+++|+-..+.+.+||..+++.+........
T Consensus 189 ~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~ 260 (305)
T PF07433_consen 189 APPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDA 260 (305)
T ss_pred cCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCce
Confidence 44554433 12222 223578999999999998888998999999999999998877665443
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.27 E-value=0.00036 Score=73.67 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=108.4
Q ss_pred CcEEEEeccCCceeeEeEEee--c-CCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEccCCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--A-STSKVICCHFSSDGKLLATGGHD--------KKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~-h~~~V~~l~fspdg~~Lasgs~D--------g~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
+.+.++|..++ ..+.+.... . .....+++++.++|++.++.... |.|..++.+ ++..... ..-...
T Consensus 60 ~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~p 136 (246)
T PF08450_consen 60 GGIAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFP 136 (246)
T ss_dssp TCEEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSE
T ss_pred CceEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccc
Confidence 44566788887 555555553 2 45678899999999988876644 457777776 5543333 334567
Q ss_pred EEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceE---EEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 684 TDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSL---RTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 684 ~~v~fsp~~~~La-sgs~Dg~V~iWD~~~~~~~~---~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+.|+|+|+++.|+ +-+..+.|..||+...+..+ ..+ ....+..-.+++..+|. ++++.-..+.|.++|.+ |
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G 214 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G 214 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c
Confidence 8999999999776 45678889999997533311 222 22223478899999986 66676678999999998 8
Q ss_pred ceEEEEeeCCceEEEEEec--CCCEEEE
Q 003106 757 SCTRVFKVESFCCWCVNAM--NRPCLWD 782 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~--~~~~l~~ 782 (847)
+.+..+......+.++++. +...||.
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888888775566666652 3344443
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.27 E-value=0.00014 Score=81.92 Aligned_cols=210 Identities=12% Similarity=0.030 Sum_probs=119.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE-EEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-VRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~-v~fsp~ 691 (847)
.++.+..+|..+|. .+..+.-.......... ++..++.++.|+.|+.||.++++.+....... .+.+ ..+ .
T Consensus 73 ~~g~v~a~d~~tG~---~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~ 144 (377)
T TIGR03300 73 ADGTVVALDAETGK---RLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--A 144 (377)
T ss_pred CCCeEEEEEccCCc---EeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--E
Confidence 44667777777662 23222222211112222 56788888899999999999999887765332 2222 122 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+..++.++.|+.|+.||.++ ++.+..+......+ .+..+. + . .++.+..++.|..+|+++|+.+-......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 45777788899999999998 55555544322111 111222 2 3 45577778999999999998665443211
Q ss_pred c----e------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 767 F----C------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 767 ~----~------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
. . +.+........++....++.+..+|..... .+.... . .. +. .....+..|++++.|
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~~-~-~~-------~~--~p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKRD-A-SS-------YQ--GPAVDDNRLYVTDAD 288 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEeec-c-CC-------cc--CceEeCCEEEEECCC
Confidence 0 0 000011123467777778888888864321 111111 0 00 00 011135678888899
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
|.|..++..+
T Consensus 289 G~l~~~d~~t 298 (377)
T TIGR03300 289 GVVVALDRRS 298 (377)
T ss_pred CeEEEEECCC
Confidence 9999888754
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=1.9e-05 Score=90.30 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=151.9
Q ss_pred cceEEEecCCCeEeecCCC-eEEeCCCCchhhccccccccCCCCCceEEeeec---------C------CCCCCCCcEEE
Q 003106 556 KPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSH---------D------DTDPRDAGGRG 619 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~-~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~---------d------~t~~~d~~v~v 619 (847)
...+.|+|.|-..+++++. .+-|..+......+.... .+.+...|... . .++...|.|.+
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 4456677777655554433 566666655544332211 11111112110 0 14667889999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCE
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPR 694 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~ 694 (847)
||...+ ..+..+..|.++|-+++|-+ +. .+|+.-....+|.+|+.++|+.+.++........|+.+.| |.++
T Consensus 94 ~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 94 VDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999876 45666788999999999977 44 4666666778999999999999988876666778899999 4556
Q ss_pred EEEEeCCCcEEEEECCC------CCceEEEeccCCC----------------C---------eEEEEEecCCCeEEEEEe
Q 003106 695 LATSSFDKTVRVWDADN------PGYSLRTFMGHSA----------------S---------VMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~------~~~~~~~~~~h~~----------------~---------V~sl~fsp~g~~ll~s~s 743 (847)
|+.-+..|.|.+-+.-. +++.+..-..|.+ . ...++|+|.-++++ ...
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~ 249 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FIT 249 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEE
Confidence 76666677777776532 1222222222222 0 12346788766665 334
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEE---ecCCCEEEEEcCCCcEEEEcCCc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVN---AMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~---~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
....+.|+|++-..|+.+.......+..+. ......++++..+|.+.+|-...
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 467899999999999988887776544443 34567899999999999997554
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.24 E-value=7.1e-06 Score=83.02 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=62.8
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-eeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003106 639 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 639 ~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~ 711 (847)
..|.+++-+| ....+++|+.||.|.|||++... ++..++.|+.+|+.|-|+|. +..|++++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3499999999 45678888999999999999764 44567899999999999996 67899999999999999985
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00013 Score=83.16 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=87.4
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCC--CcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~D--g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..|.++|+.++ ..+.+ ....+.+.+.+|+|||+.|+.. +.+ ..|.++|+.+++. ..+..+........|+||
T Consensus 213 ~~Iyv~dl~tg-~~~~l---t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTG-KKEKI---ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED 287 (419)
T ss_pred CEEEEEECCCC-cEEEE---ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC
Confidence 35777888776 22232 2345567778899999877654 333 4688889887764 344444443456689999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCceE
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCT 759 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~D--------g~V~iWD~~~~~~~ 759 (847)
|+.|+..+. .+ .|.++|+.+ +...+. +.+. ....|+|+|+.+++++..+ ..|.+.|+.++...
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCC-CCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 998876653 33 588888876 443222 2222 1258999999887776543 36788888887643
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.21 E-value=0.00023 Score=78.42 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=133.3
Q ss_pred ceEEEecCCCeEeecC------------------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCc
Q 003106 557 PLMMFGTDGAGTLTSP------------------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAG 616 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~------------------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~ 616 (847)
--+.|+|.|.+|.+-. ...+||+.++.+...+.-..-.- +.=.+.-|...|. .-.....
T Consensus 75 ~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 75 KYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred eecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhhccCe
Confidence 4456788888776622 12679999887766543322110 0001223333333 2223456
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEE-----EeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLAT-----GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Las-----gs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+.++++.......+...++ ...|....|+|. +..||. .+.++.++||.+.....+.+..-....=..+.|.
T Consensus 154 l~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred EEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 7788873332323333333 467889999995 344553 4668899999998666655433222233468889
Q ss_pred CCCCEEEEEe-----------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCc
Q 003106 690 PSMPRLATSS-----------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGS 757 (847)
Q Consensus 690 p~~~~Lasgs-----------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s-~s~Dg~V~iWD~~~~~ 757 (847)
+.|++|++-- ....++|++++. ..+....+-.+.|...+|.|.++.+.+. |-.+-.+.++|++..
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 9888764421 134578888875 3334333668899999999998876543 356788999999866
Q ss_pred eEEEEeeCCceEEEEEecCCCEEEEE--cCCCcEEEEcCC
Q 003106 758 CTRVFKVESFCCWCVNAMNRPCLWDK--LDAGDIQISDSL 795 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~~~~l~~~--~~~g~i~i~d~~ 795 (847)
.+..+.........+.......++.+ ...|.+.+|+..
T Consensus 309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred eEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 33333322222222222233334433 234667777743
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.20 E-value=0.00018 Score=78.31 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=100.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~ 714 (847)
+|...|.-..+..+++-++.|..|| .|.|||.++++..+ +...-+.|.+|..+++|++++.+.....|.+.|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 5778899999999999999999999 89999999877654 455667899999999999999999999999999998 55
Q ss_pred eEEEeccCCCCeEEEEEecCCCeEEEEEeCC----CcEEEEECCCCceEEEE
Q 003106 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVF 762 (847)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D----g~V~iWD~~~~~~~~~~ 762 (847)
....-+...+-|+.++|||+++++ |-+--+ ..|+++|+.+++.....
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec
Confidence 444445566889999999998754 444434 46899999988765543
No 294
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.17 E-value=2e-06 Score=57.07 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcC
Q 003106 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (847)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (847)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999885
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=1e-05 Score=84.91 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceEE
Q 003106 644 CHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLR 717 (847)
Q Consensus 644 l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----~~~~~ 717 (847)
|+|+- .|-. ++.+.+-.|-+-|++++-.- .|. .++.|.++.|.-.++.++.|+.+|.|.++|+|.. +.+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35553 2333 45566778999998876442 332 5677999999999999999999999999999975 45566
Q ss_pred EeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEE---ecCCCEEEEEcCCCcEE
Q 003106 718 TFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVN---AMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~---~~~~~~l~~~~~~g~i~ 790 (847)
.+. |.+.|+++..-. ++.+| ++.+-+|+|++||+|--+| +..+.+|.....-+. ......|+++.+|...+
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEE-cCcchhhhhhhccccceE-eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 664 889999988766 44544 4777899999999998777 888888755332221 23456777888888899
Q ss_pred EEcCCccc
Q 003106 791 ISDSLFIN 798 (847)
Q Consensus 791 i~d~~~~~ 798 (847)
+|.....+
T Consensus 372 iWsl~~gh 379 (425)
T KOG2695|consen 372 IWSLDSGH 379 (425)
T ss_pred EEecccCc
Confidence 99866433
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=6.2e-05 Score=84.93 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=72.0
Q ss_pred EEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEE
Q 003106 618 RGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~La 696 (847)
++|++..+ .++.+... -.....|.|++++|+.+.|+.|+.||.|++||...+... +....-.++.++|+|+|..|+
T Consensus 239 ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 46666654 33433322 257789999999999999999999999999998765333 223445678999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 003106 697 TSSFDKTVRVWDADN 711 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~ 711 (847)
+|+.-|.|.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999975
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=4.4e-05 Score=88.18 Aligned_cols=185 Identities=17% Similarity=0.125 Sum_probs=121.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~ 717 (847)
.+.++|++++ +++|+.|+.+|.|++++.. +.. .+...|+.. ..+|++++||+.||+|.|..+.+. ....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccce
Confidence 4668888886 6799999999999999976 333 444455544 667999999999999999998873 3333
Q ss_pred EeccCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECCCC--ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 718 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNG--SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp~----g~~ll~s~s~Dg~V~iWD~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
++. ...++.+|+++|+ ....+++|+.-| |.++.-+-- +.-..+....+.|.++.+.+....|+... -|++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~--Gv~v 183 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDD--GVKV 183 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCC--CcEE
Confidence 332 3467999999998 223466888777 777654421 11124566677899999888878887543 4667
Q ss_pred EcCCcccceeeecccc---cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINANIFCGLGW---YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+|.............. ......+...|. ++..|+.|-+| +|+|..+
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~------~~~~LVIGW~d-~v~i~~I 232 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ------DEDRLVIGWGD-SVKICSI 232 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEec------CCCeEEEecCC-eEEEEEE
Confidence 7755333222211111 112222333444 56778888777 5666654
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.11 E-value=0.00036 Score=72.34 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-------CCCCeEEEEEcCCC------CEEEEEeCCCcEEEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVW 707 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~I~~v~fsp~~------~~Lasgs~Dg~V~iW 707 (847)
=+-++|+||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+-. ..|++...+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45689999999999999999999999874 33333321 23557777775532 256777788888877
Q ss_pred ECCC----CCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCC
Q 003106 708 DADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 708 D~~~----~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
-+.. ......+|. .+...|.++.|+|...-|++.|....
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 7632 122233332 24668999999999876665554443
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=6.3e-05 Score=86.93 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..+|.+++.+.... . .+...|... ..+|++++||+.||+|.|..+.+.+...++. ...+|.+|+++|
T Consensus 55 GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~P 122 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHP 122 (846)
T ss_pred ccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEecc
Confidence 455666666665432 1 223334333 4589999999999999999999888777664 456899999999
Q ss_pred C-----CCEEEEEeCCCcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 691 S-----MPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 691 ~-----~~~Lasgs~Dg~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+ .+.+++|+.-| |.++.-+=.+... ..+....+.|.+|+|..+ +++-++.+ -|+|||+.++..+..+..
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCC-CcEEEeccccceeeccCC
Confidence 8 56899999888 7776543211111 134556789999999844 77677655 599999999887777665
Q ss_pred CC
Q 003106 765 ES 766 (847)
Q Consensus 765 ~~ 766 (847)
..
T Consensus 198 p~ 199 (846)
T KOG2066|consen 198 PS 199 (846)
T ss_pred CC
Confidence 43
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.00017 Score=82.79 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=104.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCceeEEEccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD------G------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd------g------~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..|.+.|.. ..+.+..+.-|...|+.+.|.|- + -+||++...|.|.|||...+..+..+..|.+.
T Consensus 35 slV~VVDs~---s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~ 111 (1062)
T KOG1912|consen 35 SLVSVVDSR---SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDS 111 (1062)
T ss_pred ceEEEEehh---hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcc
Confidence 345666665 45778888899999999999872 1 26778888899999999999888889999999
Q ss_pred eEEEEEcCC---C-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 683 ITDVRFSPS---M-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 683 I~~v~fsp~---~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
|.+++|-+. . ..|+.-....+|.+|+..+ |..+..+........|+.|+|-..+.|+.-+..|.|.+.+.-
T Consensus 112 ~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 112 VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred hhheeeeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 999999763 3 4667777789999999999 555655554455677899999766555555667888777653
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.09 E-value=0.0004 Score=86.27 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=128.5
Q ss_pred CCCcEEEE----eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--------------
Q 003106 613 RDAGGRGM----DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 613 ~d~~v~vw----d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-------------- 674 (847)
.+|.|-+. +.... ..+.+.. -...|.|++||||+.+|+..+.+++|.+.+-+ ..++.
T Consensus 95 ~~Gdi~~~~~~~~~~~~-~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~ 169 (928)
T PF04762_consen 95 ASGDIILVREDPDPDED-EIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKH 169 (928)
T ss_pred CCceEEEEEccCCCCCc-eeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCce
Confidence 45556665 44333 3344444 45789999999999999999999998886421 11111
Q ss_pred ----------EEcc------------------------CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCCc
Q 003106 675 ----------NLEE------------------------HSSLITDVRFSPSMPRLATSSF---D---KTVRVWDADNPGY 714 (847)
Q Consensus 675 ----------~l~~------------------------h~~~I~~v~fsp~~~~Lasgs~---D---g~V~iWD~~~~~~ 714 (847)
.|.| +.+.-..|+|..||.+||+.+. + ..||||+-+ +.
T Consensus 170 VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~ 247 (928)
T PF04762_consen 170 VSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GE 247 (928)
T ss_pred eeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ce
Confidence 1110 2223457889999999988774 3 469999986 44
Q ss_pred eEEEeccCCCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCceEEEEee----CCceEEEEEecCCCEEEEEcCCC
Q 003106 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKV----ESFCCWCVNAMNRPCLWDKLDAG 787 (847)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~~g 787 (847)
...+...-.+--.+++|.|.|. ++|+.-. ...|.+|. |+|-....|.. ....|..+.+..+..+.+..-..
T Consensus 248 L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 248 LQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred EEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 4444444444456799999997 5655543 24455665 34444444433 34567777777666665555555
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.|.+|.....+--......+..........|+ +-+...|...+.+|.+.+++.
T Consensus 326 ~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd----pe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 326 RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWD----PEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CceEEEeeCCEEEEEEEEEccCCCCCCceEEC----CCCCCEEEEEecCCcEEEEEE
Confidence 68888744322211111111122222335566 334556667766666665554
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=5.4e-05 Score=88.25 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=121.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++.-..+..+|+.+. ++.....-..+.|+-++. ++++|++|...|+|.+-|..+.+.++++.+|++.|.+++..
T Consensus 153 Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~- 226 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ- 226 (1118)
T ss_pred cchhhheeeeecccc---eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc-
Confidence 344445666777755 333333333334665554 68899999999999999999999999999999999886655
Q ss_pred CCCEEEEEeC---------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---C-c
Q 003106 691 SMPRLATSSF---------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---G-S 757 (847)
Q Consensus 691 ~~~~Lasgs~---------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---~-~ 757 (847)
|+.|++|+. |..|+|||+|. -..+.-+.-+.+ ..-+.|+|.-...++.++..|.+.+-|..+ . .
T Consensus 227 -GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 227 -GNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred -CCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 889999874 56689999997 343433333333 255889998777777888899999999443 2 1
Q ss_pred eEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 758 CTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.+..+......+..+++. ++..+..+..+|.|.+|.
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 223333334435545443 556777888899999997
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.08 E-value=3.2e-05 Score=79.89 Aligned_cols=163 Identities=17% Similarity=0.236 Sum_probs=109.1
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCC--ce----------------------------------------eE
Q 003106 639 SKVICCHFSSDGK--LLATGGHDKKAVLWHTDTL--KS----------------------------------------KT 674 (847)
Q Consensus 639 ~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~--~~----------------------------------------~~ 674 (847)
..|..+.|..++. .++..+.|++|++|.+... ++ .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4688888887553 4666678999999987432 00 00
Q ss_pred EE-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCC-----CCeEEEEEecCCCeEEEEEeCCC
Q 003106 675 NL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHS-----ASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 675 ~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~-----~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
.+ ..|...|.+|.|+.|...++++. |-.|.+|+++....+. ..++.|. ..|++..|+|....++.-.+..|
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred eccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 11 24777789999999888777765 8889999987644332 3334443 45889999998777777777789
Q ss_pred cEEEEECCCCc-eE---EEE------------eeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee
Q 003106 747 EIRYWSINNGS-CT---RVF------------KVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF 802 (847)
Q Consensus 747 ~V~iWD~~~~~-~~---~~~------------~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~ 802 (847)
+|++-|+|... |. +.+ ......+..+.+....++....+--.+.+||.......+.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pik 316 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIK 316 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCce
Confidence 99999998421 11 111 1112334555667777777777778899999665544433
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00034 Score=71.40 Aligned_cols=182 Identities=9% Similarity=-0.017 Sum_probs=111.7
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH-FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~-fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..|...+|...+... .......|...|+-+. ++-..-.+..++.|.++++++++-+.....+....-.+.++.++
T Consensus 90 gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s 167 (344)
T KOG4532|consen 90 GGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS 167 (344)
T ss_pred ccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEc
Confidence 44556667777665421 1122223333332211 11122346677889999999887544333322122338899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEE--eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----- 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~----- 762 (847)
++++++++.++...|-.|.++..++.+.. .....+.-.+..|+.... .+|++..||++.|||+|.......+
T Consensus 168 nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr 246 (344)
T KOG4532|consen 168 NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTR 246 (344)
T ss_pred CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccC
Confidence 99999999999999999999875444333 233455667889998755 7889999999999999975433222
Q ss_pred eeCCceEEEEEecC--C-CEEEEEcCCCcEEEEcCC
Q 003106 763 KVESFCCWCVNAMN--R-PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 763 ~~~~~~v~~~~~~~--~-~~l~~~~~~g~i~i~d~~ 795 (847)
..|.+.++.+.+.. . ..++....-+.+.+.|.+
T Consensus 247 p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 23566666666552 2 233333344556666644
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.03 E-value=0.00047 Score=85.62 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=121.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~vw----d~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
...+.|.++.|.+|...|+.+..+|.|.++ |..+... .....-...|.|++||||...|+..+.+++|.+-+..-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 5443322 22223456799999999999999999899888764321
Q ss_pred C----------------------CceEEEecc------------------------CCCCeEEEEEecCCCeEEEEEe--
Q 003106 712 P----------------------GYSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 743 (847)
Q Consensus 712 ~----------------------~~~~~~~~~------------------------h~~~V~sl~fsp~g~~ll~s~s-- 743 (847)
. |+.-..|.| +.+.-..|+|..||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000001100 2334567999999996655443
Q ss_pred CC---CcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcC----CCcEEEEcCCcc-cceeeecccccCCCCccc
Q 003106 744 GD---GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLD----AGDIQISDSLFI-NANIFCGLGWYGSDEIPA 815 (847)
Q Consensus 744 ~D---g~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~ 815 (847)
.+ ..||||+-+ |....+-..-.+.-.++++.+...+.++.. ...|..|+.... +..+..++ ......+..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeE
Confidence 22 579999876 554333332222223344433332222221 234555553322 22222222 112233455
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..|+ ++..+|++...|. |.+|..+.|
T Consensus 310 l~Wn-----~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 310 LAWN-----SDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEC-----CCCCEEEEEecCC-ceEEEeeCC
Confidence 5666 3677888877665 999999887
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.01 E-value=0.0017 Score=73.75 Aligned_cols=214 Identities=9% Similarity=-0.014 Sum_probs=116.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEE-EEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-------C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVI-CCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-------L 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~-~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-------~ 682 (847)
.++.+..+|..+|. .+..+......+. ...-+| .+..++.++.++.|..+|..+++.+..+..... .
T Consensus 168 ~~g~l~ald~~tG~---~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGA---VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCC---EeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 46678888888773 2222221110000 000011 234577778899999999999887665432110 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 683 ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 683 I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
...+..+| .+..|+.++.+|.+..+|+.+ +..+-...- .....+.. .+..++ .++.||.|..+|.++|+.+-
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEE
Confidence 11111222 255777888899999999998 544433321 11222222 234444 66779999999999997654
Q ss_pred EEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 761 VFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 761 ~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
...................++.+..+|.+.++|..... +.......+....... -..+..|++++.||.|+
T Consensus 319 ~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~--~~~~~~~~~~~~~s~P-------~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 319 SQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR--FVAQQKVDSSGFLSEP-------VVADDKLLIQARDGTVY 389 (394)
T ss_pred cccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC--EEEEEEcCCCcceeCC-------EEECCEEEEEeCCceEE
Confidence 33321111111111234577888888988888865322 2221111111111110 01255799999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
.+++
T Consensus 390 ~~~~ 393 (394)
T PRK11138 390 AITR 393 (394)
T ss_pred EEeC
Confidence 8874
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.00 E-value=0.00014 Score=79.11 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=97.4
Q ss_pred CCCCC-cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDA-GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~-~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..|+ .+.++|..++ ++..+...-+.|.+++.++||++++.+.+...|.++|++++.....-+...+-|+.++||
T Consensus 377 gt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~ 452 (668)
T COG4946 377 GTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH 452 (668)
T ss_pred eccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc
Confidence 44566 7788998876 455666778899999999999999999988999999999998866666677889999999
Q ss_pred CCCCEEEEEeCCC----cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 690 PSMPRLATSSFDK----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 690 p~~~~Lasgs~Dg----~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
|++++||-+--+| .|+|+|+.. ++..... ...+.=.+-+|.|++++|..
T Consensus 453 ~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 453 PNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCceeEEEecCcceeeeeEEEEecCC-CeEEEec-CCcccccCcccCCCCcEEEE
Confidence 9999998876555 599999997 4443332 23344456789999887643
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=3.6e-05 Score=87.06 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=91.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------eeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------------SKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---------------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.+....|+.|+....+||+|+.||.++|..+++.. .-.++.+|...|.-+.|+.....|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568899999999999999999999999776421 123578999999999999998899999999
Q ss_pred CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 702 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|-|.||-+-.+..+-..+ ...++.|.+++|.-+|..+ +..-.||.|.|=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeecc
Confidence 999999987743322222 2346779999999999865 4666788887665553
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.0024 Score=67.36 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=107.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----CCCCeEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~I~~v 686 (847)
..+.|..|+..++. ...+.... ...+++. +++ .|+.+..+ .+.++|..+++....+.. .....+++
T Consensus 20 ~~~~i~~~~~~~~~----~~~~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~ 91 (246)
T PF08450_consen 20 PGGRIYRVDPDTGE----VEVIDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDV 91 (246)
T ss_dssp TTTEEEEEETTTTE----EEEEESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEE
T ss_pred CCCEEEEEECCCCe----EEEEecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceE
Confidence 35677778877662 11122222 6777777 565 45555554 456669988866544432 33568899
Q ss_pred EEcCCCCEEEEEeCC--------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 687 RFSPSMPRLATSSFD--------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 687 ~fsp~~~~Lasgs~D--------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
++.++|++.++.... |.|..++.. +. +..+...-...+.|+|+|+++.++++-+..+.|..||+.....
T Consensus 92 ~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 92 AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecccccc
Confidence 999999977766543 456666665 23 3333333456889999999998887888889999999964321
Q ss_pred ----EEEE---eeCCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 759 ----TRVF---KVESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 759 ----~~~~---~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
...+ .........+..+....||.+. ..+.|.+++..
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1222 2222346667777777777654 57778888754
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.96 E-value=8.9e-05 Score=76.76 Aligned_cols=205 Identities=18% Similarity=0.232 Sum_probs=120.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCC------------CCeEEEEEcCCCC--EEEE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHS------------SLITDVRFSPSMP--RLAT 697 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~------------~~I~~v~fsp~~~--~Las 697 (847)
..+.|+++.|...|.+|+||...|.|.+|.-+.. +....|.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3567999999999999999999999999976532 2223344443 3477888876643 6777
Q ss_pred EeCCCcEEEEECCCC------------------Cc------------------e-----EEEe-ccCCCCeEEEEEecCC
Q 003106 698 SSFDKTVRVWDADNP------------------GY------------------S-----LRTF-MGHSASVMSLDFHPNK 735 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~------------------~~------------------~-----~~~~-~~h~~~V~sl~fsp~g 735 (847)
.+.|++|++|.+... +. . .+.+ ..|.-.|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999998652 00 0 1111 3466678999999997
Q ss_pred CeEEEEEeCCCcEEEEECCCCc-e--EEEEeeCC-----ceEEEEEecC--CCEEEEEcCCCcEEEEcCCc-----ccce
Q 003106 736 DDLICSCDGDGEIRYWSINNGS-C--TRVFKVES-----FCCWCVNAMN--RPCLWDKLDAGDIQISDSLF-----INAN 800 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~-~--~~~~~~~~-----~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~-----~~~~ 800 (847)
..+| ++. |-.|.+|++.--. + +..++.+. ..+.+..+.. ...+.-.+..|.|++.|.+- ....
T Consensus 185 et~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7555 554 7789999887432 2 22222221 2233333332 23445566778888887541 1111
Q ss_pred eeec----ccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 801 IFCG----LGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 801 ~~~~----~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.. ..+..-..+...+-++.+.. ++++|++-+.- +|+|||+.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvn 309 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVN 309 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecc
Confidence 1110 00001111122222333333 56677766554 89999985
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.90 E-value=0.00087 Score=69.56 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=104.9
Q ss_pred CcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEE--eeecCCCC---------CCCCcEEEE
Q 003106 555 SKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVES--FLSHDDTD---------PRDAGGRGM 620 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~--~~s~d~t~---------~~d~~v~vw 620 (847)
.-.-++||||+..++.+.+ ++++|+...++...-......+.+...|.. |.....+. ..+|.++-+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3457899999998877544 388988764433211111122333333332 22222111 123344444
Q ss_pred eccC--CceeeEeEEee--c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 621 DVSQ--GFSFKEANSVR--A-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 621 d~~~--~~~~~~~~~l~--~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
-+.. ...+.+..++. . +...|.++.|+|.-++|++||.... +++. -++....+++-++-.+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcE
Confidence 4322 22344444433 2 4678999999999888888775432 0000 01122233333332222211
Q ss_pred --EEEeCCCc------EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 696 --ATSSFDKT------VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 696 --asgs~Dg~------V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++...|+. ..+|.+-+ ...........+.|..|..+|||. +||+...+|.|.+|++.+-+....++.+
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence 12222221 23333322 111111123467899999999988 6679999999999999988777776643
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00023 Score=76.44 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=80.2
Q ss_pred EEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 662 V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ..++..+..+ ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 56666556666666678889999999999877 788899999999999998 6677777777 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCc
Q 003106 741 SCDGDGEIRYWSINNGS 757 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~ 757 (847)
+|...|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999999754
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.00087 Score=76.34 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=121.0
Q ss_pred cceEEEecCCCeEeecCCCe---EEeCCCCchhhcc------cccccc---CCCCCceEEeeecCC-----CCCCCCcEE
Q 003106 556 KPLMMFGTDGAGTLTSPSNQ---LWDDKDLELRADM------DRLVED---GSLDDNVESFLSHDD-----TDPRDAGGR 618 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~~---iWD~~~~~~~~~~------~~~~~~---g~~d~~v~~~~s~d~-----t~~~d~~v~ 618 (847)
-..+.|.-...+++.++.+. +..+.+....... ..+... .++...|...-..+. +...+|.|-
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 35778888888888888773 3333322111111 111111 223334443322222 777889999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEccCCCCeEEEEEcCCCCEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
+|-+.++ .|-+.-.-...++.|.+++|+.||..|+..-.||.|.|=.++..+.. +.+++ .-...+.|++|.+.++.
T Consensus 97 VWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 97 VWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEeeecc-cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHh
Confidence 9999988 44333333445678999999999999999999999999887743322 12222 12347889999998888
Q ss_pred EeCCCcEEEEECCCCC------ceEEE----eccCCCCeEEEEEe--------cCCCeEEEEEeCCCcEEEEECCC
Q 003106 698 SSFDKTVRVWDADNPG------YSLRT----FMGHSASVMSLDFH--------PNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~------~~~~~----~~~h~~~V~sl~fs--------p~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+-.+|.+.+||..... .+... +......|-.+.|. |+.. .|+.|-.+|.+.|-.-.+
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcC
Confidence 8889999999986421 11111 11122346667764 4555 455777778877654443
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.1e-05 Score=87.29 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=114.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeE--------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~-------------- 674 (847)
+++.|+.++.|--..-...+.+..+..|...|.+++.+-|+.+++|++. |+.++++|+++...+.
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv 104 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV 104 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe
Confidence 5666777777775543345667778889999999999999999999887 9999998875422110
Q ss_pred ----------------------------------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----Cce
Q 003106 675 ----------------------------------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-----GYS 715 (847)
Q Consensus 675 ----------------------------------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~-----~~~ 715 (847)
.-+-|..+|.++.+.+.++.+++....|.|..|..+.. ...
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l 184 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL 184 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence 01237889999999999999999999999999998731 111
Q ss_pred ---------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 716 ---------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 716 ---------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+..+........++.|+|++.. +.+-..|..|+++++++|+.+..+.
T Consensus 185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 185 NFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhh
Confidence 2222334667889999999885 4577789999999999998776654
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00027 Score=76.77 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=135.2
Q ss_pred CcceEEEecCCCeEeecCC----CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------CCCCCCcEEEEecc
Q 003106 555 SKPLMMFGTDGAGTLTSPS----NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVS 623 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~----~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------t~~~d~~v~vwd~~ 623 (847)
.+.+++.+-||....+... .+++|+.+.+...-+. ...+.+.++++.+..+ +...++.+.++|-.
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK----L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK----LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc----cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence 3455677788887766333 4889998876554222 2224444444444442 44556778888866
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-----ceeEE---------EccCCCCeEEEEE
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-L-----KSKTN---------LEEHSSLITDVRF 688 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~-----~~~~~---------l~~h~~~I~~v~f 688 (847)
.+ .......-+-|..+|.++.+.+.+..+++....|.|..|..+. . +.... +.......+++.|
T Consensus 131 ~d-~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 131 GD-FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred CC-cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 54 2233333456999999999999999999999999999999872 1 11111 2234567889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEe--------------------------------ccCCC-CeEEEEEecCC
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTF--------------------------------MGHSA-SVMSLDFHPNK 735 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~--------------------------------~~h~~-~V~sl~fsp~g 735 (847)
+|++..+.+-+.|.+||++++++ +..+..+ ..|.. .-+.++|...+
T Consensus 210 sp~g~qistl~~DrkVR~F~~Kt-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKT-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG 288 (558)
T ss_pred ccccCcccccCcccEEEEEEecc-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC
Confidence 99999999999999999999987 3332221 12322 23567788888
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
..+| -++-= -|+|.++.++.+++.+.
T Consensus 289 ~fll-y~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 289 NFLL-YGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred CEEE-eecce-eEEEEEeecCeEEEEec
Confidence 7665 44432 48999999998888764
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.83 E-value=0.00021 Score=83.43 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. ++++|++|...|+|.+-|.++ .+.+.++..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 5567888888888999999988887776655555655554 478999999999999999998 7889999999999977
Q ss_pred EEEecCCCeEEEEEeC---------CCcEEEEECCCCceEEEEeeCCce-EEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 729 LDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKVESFC-CWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~---------Dg~V~iWD~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
++.+ |. +|++|+. |..|+|||+|.-+.+.-+..+... ...+...-...+...+..|...+.|.....
T Consensus 223 fDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 7766 43 6668875 556899999987766554433222 111111122344555566666665522111
Q ss_pred ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 799 ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
....... ...........++ ...++..++.|..+|.|.+|.
T Consensus 300 NP~~~~~-~v~p~~s~i~~fD---iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVK-MVNPNGSGISAFD---ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCcccee-EEccCCCcceeEE---ecCCCceEEEecccCcEeeec
Confidence 1100000 0000001112222 234678999999999999996
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.82 E-value=0.0013 Score=70.06 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=108.3
Q ss_pred eEEEecCCCeEeecCCC--------eEEeCC-CCchhhccccccccCCCC-----CceEEeeecCC--C-----------
Q 003106 558 LMMFGTDGAGTLTSPSN--------QLWDDK-DLELRADMDRLVEDGSLD-----DNVESFLSHDD--T----------- 610 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~--------~iWD~~-~~~~~~~~~~~~~~g~~d-----~~v~~~~s~d~--t----------- 610 (847)
.-+||+||+++++.-.+ .+||+. ....+.++...- .+.++ +.-.+++...+ +
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 34899999999886443 689998 444444333210 01110 01111222222 1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEEEc----
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKK-------AVLWHTDTLKSKTNLE---- 677 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~-------V~vwd~~~~~~~~~l~---- 677 (847)
...+-.+...|..+| .+.....+ .-|...|+.|++..+|..++.+-+.|. |.+++.. +.+..+.
T Consensus 134 ~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~ 210 (305)
T PF07433_consen 134 DTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEE 210 (305)
T ss_pred hhcCCceEEEecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChH
Confidence 222344556677777 33444445 458889999999999987777655442 4444433 2233222
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 678 ---EHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 678 ---~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
.-...|-+|+|+.++.++++.| ..+.+.+||..+ +..+.... -..++.|+..+++ +++|.+ .|.|..
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~--l~D~cGva~~~~~--f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVP--LPDACGVAPTDDG--FLVSSG-QGQLIR 281 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccc--cCceeeeeecCCc--eEEeCC-CccEEE
Confidence 2346799999999998875555 788999999998 66655543 2346777777665 454444 455433
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0021 Score=75.18 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=106.4
Q ss_pred CCcEEEEeccCCce---eeEe--EEeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEEccC
Q 003106 614 DAGGRGMDVSQGFS---FKEA--NSVRA-----STSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEH 679 (847)
Q Consensus 614 d~~v~vwd~~~~~~---~~~~--~~l~~-----h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h 679 (847)
...+++||++.-.. ..++ ..+.+ ...++.+++++.+-+.+|+|-.||.|..+.-+ .+.........
T Consensus 91 p~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred ceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 33899999886421 1222 12222 35678899999999999999999999998532 12222222234
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..+||.+.|.-++..++.+..-..|.+|.+......+.++..|...+.|..|++....++|++ +..|.+||......-
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPC 248 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCccee
Confidence 578999999999887444444577999999864434566788888999999998755455444 468999999876665
Q ss_pred EEEe-eCCceEEEE
Q 003106 760 RVFK-VESFCCWCV 772 (847)
Q Consensus 760 ~~~~-~~~~~v~~~ 772 (847)
..|. ++.....++
T Consensus 249 faf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 249 FAFEVGEKKEMLVF 262 (933)
T ss_pred eeecCCCeEEEEEE
Confidence 6666 554444433
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.80 E-value=0.0013 Score=74.70 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCeEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMS 728 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V~s 728 (847)
+..|+.++.+|.+..+|+.+++.+.+.... ....+.. .+..|+.++.||.|..+|..+ +..+-....- .....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccC
Confidence 456777788999999999999887655321 1112222 366888888999999999988 5444332211 111222
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.... +. .|+.++.||.|.++|..+|+.+..++.....+..--......|+.++.+|.++.++
T Consensus 331 p~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 331 PVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 2222 33 34578889999999999999888776543323321112344777888888877654
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00023 Score=82.24 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=64.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
+++++|+|..-.|+.|-.-|.+.||...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|..+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 55799999988899998999999999988777767778999999999999999999999999999998763
No 321
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.0013 Score=78.99 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCC-C-ceeEE-Ec--cCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSS-----DGKLLATGGHDKKAVLWHTDT-L-KSKTN-LE--EHSS 681 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fsp-----dg~~Lasgs~Dg~V~vwd~~~-~-~~~~~-l~--~h~~ 681 (847)
....+.-.|++.| +.+..++.|... |.+++=.. +..-.+.|-.+..|..||.+- + +++.. .+ ....
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 4677889999988 566666666654 65554321 234566777788999999883 2 23321 11 2345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+|++-+.+| +||+|+.+|.||+||-.. ......+.+-..+|.+|+.+.||+++|+|| +..|.++|+.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 57888877777 899999999999999542 344445567789999999999999999888 5788888863
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.0032 Score=65.68 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=106.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCC---CCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHS---SLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~---~~I~~v~ 687 (847)
..++.+..||..+| +.+..+.. ...+.... ..++..|++++.|+.|+.+|+.+++.+..+ .... .......
T Consensus 43 ~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 43 SGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp ETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SE
T ss_pred cCCCEEEEEECCCC---CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccC
Confidence 36888999999888 33333332 12211111 224566777778889999999999998884 3221 1122222
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC----------e-EEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS----------V-MSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~----------V-~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+...++.++.+..++.|..+|+++ +..+..+...... + ..+.+. ++ .++ .++.++.+..+|++++
T Consensus 118 ~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 118 PAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAVDLATG 193 (238)
T ss_dssp EEEETTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEEETTTT
T ss_pred ceEecCEEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEEECCCC
Confidence 333378899999899999999998 7776666544322 1 222223 33 454 5666775444499999
Q ss_pred ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 757 SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+-... ...+..........+|....++.+..+|...
T Consensus 194 ~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 194 EKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 8663222 2333332335566777777889999998653
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=0.0044 Score=63.28 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=93.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..+++.|+..+.++-.|..+|+.+.+-. -...|.+-+.- -|++++.|+..|.+++.++.+ +.....|..-...-...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence 4578888999999999999988876532 22334433322 477899999999999999999 54444443222111122
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d 793 (847)
...+++. ++..++.|++.+..|.++..|+...+.......+-.. .....++.....|.+....
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence 3355655 7779999999999999999999988766554322222 2345566666666655444
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.0015 Score=79.14 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=74.6
Q ss_pred EEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCC-
Q 003106 642 ICCHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP- 712 (847)
Q Consensus 642 ~~l~fspdg~~Lasg-----s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~- 712 (847)
+.|.|.-||.+||+. ...++|+|||-+ +..-.+-..-.+.=.+++|-|.|..+++.. .|+.|.+|.-+..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 468999999999983 333899999977 443332222233346899999999988753 4667988876431
Q ss_pred -CceEEEeccCCCCeEEEEEecCCCeEEEE---EeCCCcEEEEECCCCc
Q 003106 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICS---CDGDGEIRYWSINNGS 757 (847)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~g~~ll~s---~s~Dg~V~iWD~~~~~ 757 (847)
+.....+......|..|+|+.++. +|+. +.....|++|-+.+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 111112222334489999999977 5544 3334449999987653
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0045 Score=72.60 Aligned_cols=191 Identities=11% Similarity=0.142 Sum_probs=122.1
Q ss_pred ceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 003106 600 NVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGKLLATGGHDK-----KAVLWHTDTL 670 (847)
Q Consensus 600 ~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~ 670 (847)
.+.+|.+..+ .+..+|.|.+.+ . .++.+..++++... |.-+....+..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--S--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--c--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 3445544433 234444444443 3 34566777777777 55555444447888888775 4899998732
Q ss_pred ------ceeE--EEcc-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCceEEEeccCCCCeEEEEEecC
Q 003106 671 ------KSKT--NLEE-----HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPN 734 (847)
Q Consensus 671 ------~~~~--~l~~-----h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~---~~~~~~~~~~~h~~~V~sl~fsp~ 734 (847)
.++. .+.. ...++.+|+.+.+-+.+|+|-.||.|.++.-+ ..+...........+|+.+.|..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1112 34678899999998899999999999998532 212222222334678999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 735 KDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 735 g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+..++..+. ...|.+|.+.... ...++..++..+.|..++....-+.++....+.+|+..
T Consensus 183 ~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred CceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 887432333 4589999998444 24557778888888888776663444455567777754
No 326
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.66 E-value=0.0036 Score=69.39 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=122.3
Q ss_pred ceEEEecCCCeEe--ecCCCeEEeCCCCchhh---------ccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCC
Q 003106 557 PLMMFGTDGAGTL--TSPSNQLWDDKDLELRA---------DMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQG 625 (847)
Q Consensus 557 ~~v~~s~dG~~~~--~~~~~~iWD~~~~~~~~---------~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~ 625 (847)
+.+.|+-|..+++ .+.+..|+++ +..... .+..+.-+..-+....+++.+ ...+.++.+++|.+-.+
T Consensus 135 p~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tP-Ek~~kpa~~~i~sIp~~ 212 (561)
T COG5354 135 PVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTP-EKLNKPAMVRILSIPKN 212 (561)
T ss_pred ceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEcc-ccCCCCcEEEEEEccCC
Confidence 4788999988764 3455578885 222111 111121111112222222222 35677889999999876
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGG-----------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-----------~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
..+....-++. .=..+.|.+.|++|++-- ...++.|+++....+ .....-.++|.+++|.|.++.
T Consensus 213 s~l~tk~lfk~---~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 213 SVLVTKNLFKV---SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred CeeeeeeeEee---cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCc
Confidence 44333333332 224678888888766421 124678888874333 333366889999999999998
Q ss_pred EEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCc-eEEEEeeCCc
Q 003106 695 LATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGS-CTRVFKVESF 767 (847)
Q Consensus 695 Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~-~~~~~~~~~~ 767 (847)
|++++ .+-++.++|++. ..+.. .-...=..+.|+|.++++|+.|-. -|.|.|||..... ++..+.+...
T Consensus 289 F~vi~g~~pa~~s~~~lr~--Nl~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~ 362 (561)
T COG5354 289 FAVISGYMPASVSVFDLRG--NLRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT 362 (561)
T ss_pred eeEEecccccceeeccccc--ceEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc
Confidence 76655 688999999996 23333 234445668899998877754432 3789999998654 4445655443
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=1.6e-05 Score=89.43 Aligned_cols=204 Identities=15% Similarity=0.108 Sum_probs=118.1
Q ss_pred CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcCC-CCEEEEEe----CCCcEEEEE
Q 003106 638 TSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS-MPRLATSS----FDKTVRVWD 708 (847)
Q Consensus 638 ~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp~-~~~Lasgs----~Dg~V~iWD 708 (847)
...+.|+++.- |..+++.|..+|.|.+-.++... ......+|....++++|++- .++||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34577777765 34578999999999998876322 23345578889999999985 45677664 366799999
Q ss_pred CCCC----CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 709 ADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 709 ~~~~----~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
+.+. ........+....+.+++|..+.+ ++.+|.....|+++|+|... ...-......+..+..+. ....++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceec
Confidence 9873 111111122445567899996655 66699888999999998321 111111222222222222 2334455
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC-CeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD-SSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D-G~V~vW~~ 844 (847)
..+|.|.+||....-...+.. ........+.....+++.+.....+++...| ++|+.|++
T Consensus 214 ~~dg~iAiwD~~rnienpl~~-i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQI-ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cccCceeeccchhhhccHHHH-HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 569999999943221111111 1111111122233333334445566666544 57787765
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00084 Score=76.97 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS- 715 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~- 715 (847)
...|.=-++...+++|+.|+.-|.|++|+-..++... +..+..+.+..+.++++..++|.|+..|.|.|+-+......
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344445566678999999999999999976554432 22234455666678888888899999999999988753221
Q ss_pred ---EEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 716 ---LRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 716 ---~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+..+ +.|...|++++|++++..++ +|+.-|+|.+-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 1111 34788999999999998765 999999999888776
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0004 Score=78.64 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~-~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
...|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...|+ +++|.|||+.||.|-.||+|++.|+.+++...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4467789999999999999999999999988 788888887877777 99999999999999999999999999854443
Q ss_pred EEeccCCCCeEEEEEec
Q 003106 717 RTFMGHSASVMSLDFHP 733 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp 733 (847)
.........|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33334566788888874
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.0044 Score=55.92 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=68.9
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 641 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 641 V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
|++|++.. || +.|++|+.|..||||+-+ ..+..+.. .+.|++++-... ..|+.+..+|+|-+|+-.. . +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e-e
Confidence 56666665 33 589999999999999854 56666654 456788877665 5799999999999998754 2 2
Q ss_pred EEeccCCCCeEEEEEe---cCCCeEEEEEeCCCcEEE
Q 003106 717 RTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fs---p~g~~ll~s~s~Dg~V~i 750 (847)
...+ .+..++++++. .+|..-|++|-.+|.|-+
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 22335655543 344455668878888753
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.42 E-value=0.011 Score=68.89 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=74.9
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-------------------------
Q 003106 646 FSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------------------------- 699 (847)
Q Consensus 646 fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------------------------- 699 (847)
+.+||+.|... -..+.|.+.|.++.+....+.--. ....++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 44567655333 234667788888777766654322 335667788888776665
Q ss_pred ---------------CCCcEEEEECCC----CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 700 ---------------FDKTVRVWDADN----PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 700 ---------------~Dg~V~iWD~~~----~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
.+++|.+.|.++ ....+..+ .-....+.|+++|||+++++++..+.+|.|+|+.+.+
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 234577888776 22233333 3445678899999999999999999999999998754
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.40 E-value=0.064 Score=62.72 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=84.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCC--EEEEEEcC--CCCEEEEEe---------CCCcEEEEECCCCceeEEEcc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSK--VICCHFSS--DGKLLATGG---------HDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
..++.+..+|..++. .+..+...... -..+.-+| .+.+++.++ .++.|..+|..+++.+..+..
T Consensus 117 ~~~g~v~AlD~~TG~---~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 117 TFDGRLVALDAETGK---QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCeEEEEECCCCC---EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 457888889988873 33332221110 00111111 224555553 468899999999998887654
Q ss_pred CCC--------------------Ce-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCCceEEEe
Q 003106 679 HSS--------------------LI-TDVRFSPSMPRLATSSFDK------------------TVRVWDADNPGYSLRTF 719 (847)
Q Consensus 679 h~~--------------------~I-~~v~fsp~~~~Lasgs~Dg------------------~V~iWD~~~~~~~~~~~ 719 (847)
... .| ....+.+.+..++.++.|+ .|.-+|+++ ++.+-.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t-G~~~W~~ 272 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT-GKVKWFY 272 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-CCEEEEe
Confidence 211 01 1234455566787777665 799999998 5555544
Q ss_pred c-c-CCC----CeEEEEEe----cCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 720 M-G-HSA----SVMSLDFH----PNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 720 ~-~-h~~----~V~sl~fs----p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
. . |.. ......+. -++. .+++.++.+|.|...|.++|+.+-.+.
T Consensus 273 ~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 273 QTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred eCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 3 1 210 00111111 1222 356678889999999999999876654
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.37 E-value=0.023 Score=69.26 Aligned_cols=178 Identities=14% Similarity=0.073 Sum_probs=103.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCce--------------
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT----DTLKS-------------- 672 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~----~~~~~-------------- 672 (847)
+...|.|.+.|.++. .+..+.. -.+.|.+++|+||+..|+..+.+++|.+-+- -..+.
T Consensus 86 ~~~~G~iilvd~et~-~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V 161 (1265)
T KOG1920|consen 86 ITALGDIILVDPETL-ELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV 161 (1265)
T ss_pred EecCCcEEEEccccc-ceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence 445677777777765 3344433 4578999999999999999998888877542 11111
Q ss_pred -----eEEEccC---------------------CCCeEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCCceEEEecc
Q 003106 673 -----KTNLEEH---------------------SSLITDVRFSPSMPRLATSS----FD-KTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 673 -----~~~l~~h---------------------~~~I~~v~fsp~~~~Lasgs----~D-g~V~iWD~~~~~~~~~~~~~ 721 (847)
...|.+. .+.=++|.|.-||.++|+.. .+ +.|+|||.+. ..-.+-..
T Consensus 162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg--~Lns~se~ 239 (1265)
T KOG1920|consen 162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG--ALNSTSEP 239 (1265)
T ss_pred cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc--hhhcccCc
Confidence 1112211 11124589999999998743 24 7899999872 21111122
Q ss_pred CCCCeEEEEEecCCCeEEEEE---eCCCcEEEEECCC---CceEEEEeeCCceEEEEEecCCCEEEEE---cC-CCcEEE
Q 003106 722 HSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINN---GSCTRVFKVESFCCWCVNAMNRPCLWDK---LD-AGDIQI 791 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~~~---~~-~g~i~i 791 (847)
..+.-.+++|-|.|.. +++. +.|+.|.+|.-+. |+.+..+......|..+.+.....+.++ .. ...|.+
T Consensus 240 ~~~l~~~LsWkPsgs~-iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l 318 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSL-IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQL 318 (1265)
T ss_pred ccccccceeecCCCCe-EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEE
Confidence 2334457999998874 4333 2356788887542 2222223333333555655544443333 33 333888
Q ss_pred EcCC
Q 003106 792 SDSL 795 (847)
Q Consensus 792 ~d~~ 795 (847)
|...
T Consensus 319 wt~~ 322 (1265)
T KOG1920|consen 319 WTTG 322 (1265)
T ss_pred EEec
Confidence 8744
No 334
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0032 Score=70.12 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=95.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Cc-eeEEEccC--
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTDT-LK-SKTNLEEH-- 679 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-------~Lasgs~Dg~V~vwd~~~-~~-~~~~l~~h-- 679 (847)
+.....++-.|++.| +.+...+-|.+ |.-+.+.||.+ .-+.|-.|..|.-||.+- ++ .+....+|
T Consensus 352 ~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred CCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 444567788888887 55556665655 77888888654 223456788999999872 33 22222233
Q ss_pred --CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 680 --SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 680 --~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.....|++-..+| +||+||.+|.||+||-- +......+.+-..+|..|+.+.+|+++|+|| +.++.+.|+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 2335566655555 89999999999999983 2444556778889999999999999998777 5778887764
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0014 Score=75.98 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=85.0
Q ss_pred EEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE
Q 003106 643 CCHFSSDGKLLATGGH----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~----Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~ 718 (847)
-+.|+|...+|++++. .|.|.||- ++|++-+.+. ..-.+++++|+|..-.|+.|-.-|.+.+|...+ .+....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 4578999999988874 57888884 5666544332 122367899999988889998899999999987 454555
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
...|...|..+.|+++|..++ ++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 567999999999999998655 99999999999765
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.027 Score=64.12 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=94.4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeC---C-CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCc-
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGH---D-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKT- 703 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~- 703 (847)
....+..-...+..-+|++++..++..+. . ..|.++|+++++....+. ..+.-..-+|+|||+.|+.+ ..||.
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCc
Confidence 33444455667888899999988766532 2 358999999876655443 23334567899999977554 55776
Q ss_pred -EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCceEEE-EeeCCceEEEEEecCCCE
Q 003106 704 -VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRV-FKVESFCCWCVNAMNRPC 779 (847)
Q Consensus 704 -V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 779 (847)
|.++|+.. +. +..+..-.+.-+.-.|+|||++++++.+..|.-.|| |++.+...+. +.........+..+.+..
T Consensus 263 ~iy~~dl~~-~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 263 DIYLMDLDG-KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cEEEEcCCC-Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEE
Confidence 55566665 22 444443334444678999999999888888875555 5555543322 222222233333444444
Q ss_pred EEEEcCCCc
Q 003106 780 LWDKLDAGD 788 (847)
Q Consensus 780 l~~~~~~g~ 788 (847)
++....+|.
T Consensus 341 ~~~~~~~g~ 349 (425)
T COG0823 341 VFESSSGGQ 349 (425)
T ss_pred EEEeccCCc
Confidence 445443444
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.23 E-value=0.021 Score=66.54 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc-------
Q 003106 648 SDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY------- 714 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~------- 714 (847)
++|++... .+++|.|+|..+ .+.+..+. -......|+++|||+++++++ .+.+|.|.|+.+...
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 36666555 256799999887 34555554 344578999999999887665 599999999987332
Q ss_pred ----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 715 ----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 715 ----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.+..- .-......|.++|. .+.|...|..|..||+.+
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 2233322 23345688999876 566888899999999976
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.23 E-value=0.00011 Score=83.04 Aligned_cols=140 Identities=18% Similarity=0.327 Sum_probs=95.5
Q ss_pred CCCcEEEEeccCCcee-eEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSF-KEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~-~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fs 689 (847)
.|..+.|||+.++.+. ++...+. +-.....+++|-.|.++|.+|...+.|.++|++ +...+..+ .+..|..+.++
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVd 204 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVD 204 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceec
Confidence 4677899999887331 1111222 244566688999999999999999999999987 22222222 23456667778
Q ss_pred C-CCCEEEEEeCCCcEEEEE-CCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC
Q 003106 690 P-SMPRLATSSFDKTVRVWD-ADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCDGD-GEIRYWSINN 755 (847)
Q Consensus 690 p-~~~~Lasgs~Dg~V~iWD-~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~ 755 (847)
| .++++++-. ||.|.+|| .++-+..+..+.... ..+..++|+|...-+++++..| ++|+.+|+..
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8 667777666 99999999 444233333332222 2489999999988788888876 7899999863
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.00086 Score=46.61 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=33.8
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 666 (847)
+....+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.21 E-value=0.012 Score=67.29 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CceEEEe
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----------GYSLRTF 719 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----------~~~~~~~ 719 (847)
|.+|+..+.+ .|.+||+.+++.++.+... .|..|.|++++++++..+. .+|.|++.+.. ...+..+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEE
Confidence 8888877655 8999999999999998643 3899999999999988874 46777776531 0134444
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
......|.+.+|..+ .++.|.. . .|+. +..|+. .++..-...++-+... ....+|....++.+..+.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYE 260 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE
T ss_pred EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEE
Confidence 444678999999976 5555543 3 7777 444542 2232223333333332 346777777777777665
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.00083 Score=46.68 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++.+..+..|...|+++.|++++..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.082 Score=60.38 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-----------cE
Q 003106 641 VICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 704 (847)
Q Consensus 641 V~~l~fspdg~~Lasg-s~Dg----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-----------~V 704 (847)
+..++++|||++||.+ +..| .|+|+|+++++.+....... ....+.|.++++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998866 3333 59999999997765432111 123499999988776655333 38
Q ss_pred EEEECCCCCce-EEEeccCCCC--eEEEEEecCCCeEEEEEeCCC---cEEEEECCCC
Q 003106 705 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG 756 (847)
Q Consensus 705 ~iWD~~~~~~~-~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~ 756 (847)
++|++.+.... ...|.+.... ...+..+++++++++...... .|.+.|+..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 88998874332 3444443332 568889999998887665543 4788888875
No 343
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.036 Score=62.18 Aligned_cols=196 Identities=12% Similarity=0.155 Sum_probs=112.8
Q ss_pred cceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCC------CCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGS------LDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~------~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
-+.+.||.|+++++. ..+..|++.....+.+. ..+...|. -..++..++.+. +......+.+..+-+.
T Consensus 308 WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~-Kslki~gIr~FswsP~~~llAYwtpe-~~~~parvtL~evPs~-- 383 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTGNSISIYETPSFMLLDK-KSLKISGIRDFSWSPTSNLLAYWTPE-TNNIPARVTLMEVPSK-- 383 (698)
T ss_pred cceEEeccCCceeEEeccceEEEEecCceeeecc-cccCCccccCcccCCCcceEEEEccc-ccCCcceEEEEecCcc--
Confidence 357799999999865 44446777765443321 11111110 112333333321 2333444555555544
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
..+++..-|+-.=+-|.|-.+|++|+.--+ -..+-|+.++....-.....-...|...+|-|.|+.+++
T Consensus 384 -~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 384 -REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred -ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 233333333333345677788888886321 123556666644333222345677999999999998876
Q ss_pred EeC---CCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEE--eCCCcEEEEECCCCce
Q 003106 698 SSF---DKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSC--DGDGEIRYWSINNGSC 758 (847)
Q Consensus 698 gs~---Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~~~~~ 758 (847)
-+. ..+|.+|.+++... .+..+. ....+.|-|+|.|..+++.+ |..|.+.++|+....+
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 553 45799999884222 233332 34577899999999776544 4478999999985333
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.04 E-value=0.14 Score=52.63 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=62.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
-|++++.|+..|.+++.++++|.....+......-......+++..|++|+.|++.+..|.++ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 477899999999999999999987777654332222233567788999999999999999998 6677776654444444
Q ss_pred EEEec
Q 003106 729 LDFHP 733 (847)
Q Consensus 729 l~fsp 733 (847)
-+..+
T Consensus 141 P~i~~ 145 (354)
T KOG4649|consen 141 PVIAP 145 (354)
T ss_pred ceecC
Confidence 45555
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.0077 Score=68.55 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=86.3
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.++|+.++. ...+..+.++. ..-+|+|||++|+.+. .||. |.++|+.++.. ..+..-.+.-+.=.|+||
T Consensus 218 ~~i~~~~l~~g~-~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGK-RPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCc-cceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCC
Confidence 568888998883 33344444443 4578999999877654 4664 56667776553 335433333346779999
Q ss_pred CCEEEEEe-CCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEE
Q 003106 692 MPRLATSS-FDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF 762 (847)
Q Consensus 692 ~~~Lasgs-~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~ 762 (847)
|+.|+-.+ ..|. |.++|.+. ..+..+......-..-.|+|+|+++++....+|. |.+.|+.++..+..+
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 99886655 4555 55556654 3333333232323378899999987766644455 666777666543333
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.00 E-value=0.057 Score=58.55 Aligned_cols=204 Identities=13% Similarity=0.087 Sum_probs=116.3
Q ss_pred CCcceEEEecCCCeEeecC-----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC-
Q 003106 554 TSKPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ- 624 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~- 624 (847)
.......++.||++++.-+ ++.+-|+...++..+++ ..++..++-..+. +.+.||.+-...+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-------~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-------TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-------GTSEEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-------CCCEEEEEecCCCceEEEecCCceEEEEECCC
Confidence 3566789999999988754 44788998887766543 2222333322222 455677777777764
Q ss_pred CceeeEe-EEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEccC----------CCCeEEEEEcC
Q 003106 625 GFSFKEA-NSVRASTSKVI-CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEH----------SSLITDVRFSP 690 (847)
Q Consensus 625 ~~~~~~~-~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~h----------~~~I~~v~fsp 690 (847)
|...... ..|..-.+++. .-++..++..++--+.+|.|+--|+...... ..+..- .+.---+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 3221111 12223333333 4455555666666789999999888754322 122110 11223477887
Q ss_pred CCCEEEEEe---CCC-------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCceE
Q 003106 691 SMPRLATSS---FDK-------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs---~Dg-------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~ 759 (847)
..++|++-- .++ .|.+||+.+ ++.+..+.. ...+.+|..+.+.+-+|++. ..++.|.|||..+|+.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 766665532 122 488889988 666766652 23577999998877566554 45799999999999999
Q ss_pred EEEeeCC
Q 003106 760 RVFKVES 766 (847)
Q Consensus 760 ~~~~~~~ 766 (847)
++++.-.
T Consensus 326 ~~~~~lG 332 (342)
T PF06433_consen 326 RSIEQLG 332 (342)
T ss_dssp EEE---S
T ss_pred eehhccC
Confidence 8887543
No 347
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.00 E-value=0.72 Score=50.03 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=80.9
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
...+.+++.+..-..-.+....+....++..++ ++..|.|+.= .+.++.-.. ...-...|..+..+++|++++++..
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 334556665542222223334444444443333 3445554432 233443332 3345577899999999998888876
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEE----EeeCCceEEEEEec
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV----FKVESFCCWCVNAM 775 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~----~~~~~~~v~~~~~~ 775 (847)
...+.-||--....... -......|.+|.|.|++..++ . ...|.|++=|.. ..+.-.. +......+..+.+.
T Consensus 165 G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp SSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred ccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 66677888653122222 223567899999999976433 3 377888887722 1211111 11223346778888
Q ss_pred CCCEEEEEcCCCcEEEEc
Q 003106 776 NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d 793 (847)
+...+|.+...|.+.+..
T Consensus 242 ~~~~~wa~gg~G~l~~S~ 259 (302)
T PF14870_consen 242 PPNEIWAVGGSGTLLVST 259 (302)
T ss_dssp SSS-EEEEESTT-EEEES
T ss_pred CCCCEEEEeCCccEEEeC
Confidence 889999999999877654
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.012 Score=70.60 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 727 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~ 727 (847)
-+..++.|+..|.|-..|+... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+.+ +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4567899999999999988742 22122223457899999999999999999999999999998 777888877766655
Q ss_pred EEEE---ecCCCeEEEEEeCCCcEEEEEC
Q 003106 728 SLDF---HPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 728 sl~f---sp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5544 34444 4557776665 5654
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.95 E-value=0.086 Score=58.06 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=86.7
Q ss_pred CCCcEEEEeccCC----ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEc-cCCCCeEEE
Q 003106 613 RDAGGRGMDVSQG----FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE-EHSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~----~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~-~h~~~I~~v 686 (847)
+.|.+.++++... ..++.+... ...+.|++|+-- .++ |+.|. .++|++|++...+ .+..-. .....|+++
T Consensus 60 ~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl 135 (321)
T PF03178_consen 60 SSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL 135 (321)
T ss_dssp S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE
T ss_pred cCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEE
Confidence 3488889998873 244444443 347889999877 444 55444 4789999998766 433322 223356777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
... +++|+.|+....|.++..+.....+..+. .....+++++|-.+++ .++.++.+|.|.++...
T Consensus 136 ~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 136 SVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred ecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 665 56999999888888875554233333332 2345688999987765 66699999999999876
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.079 Score=57.65 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=100.1
Q ss_pred CcEEEEeccCCceeeEeEEee-cC-CCCEEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCceeEEEccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-AS-TSKVICCHFSSDGKLLATGGH-----D----KKAVLWHTD-TLKSKTNLEEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h-~~~V~~l~fspdg~~Lasgs~-----D----g~V~vwd~~-~~~~~~~l~~h~~~ 682 (847)
..+.+++.+++.....+.... +. ....+++.+.|+|.+.++... . ..-+||.++ .+..++.+..+-..
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 345566665442212222222 11 245678899999988776544 1 112455555 56666666666666
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C----Cce-EEEeccCCCCeEEEEEecCCCeEEEEEeCCC-cEEEEECC
Q 003106 683 ITDVRFSPSMPRLATSSF-DKTVRVWDADN-P----GYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSIN 754 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~-~----~~~-~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~ 754 (847)
-+.|+||||++.|+.+.. .+.|.-|++.. . +.. ...+....+..-.++...+|..++ ++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pd 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPD 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCC
Confidence 689999999998877765 57888887762 1 111 222223456666788888877443 333343 89999999
Q ss_pred CCceEEEEeeCCceEEEEEecC
Q 003106 755 NGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
|+.+..+......+.|++|-.
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred -CcEEEEEECCCCCCccceEeC
Confidence 999999888866666665543
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.12 Score=56.25 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=78.9
Q ss_pred EEEEecc-CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C----ce-eEEEccCCCCeEEEE
Q 003106 617 GRGMDVS-QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT--L----KS-KTNLEEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~-~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~--~----~~-~~~l~~h~~~I~~v~ 687 (847)
.++|.+. .+ ..+..+..|-..-+.|+||||++.|+.+.. .+.|..|+++. + +. ...+..+.+..-.++
T Consensus 143 G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 143 GSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred ceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence 3566665 33 233334444455668999999998887755 37787777652 1 11 112222344555677
Q ss_pred EcCCCCEEEEEeCCC-cEEEEECCCCCceEEEeccCCCCeEEEEEe-cCCCeEEEEEeCC
Q 003106 688 FSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGD 745 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg-~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~s~s~D 745 (847)
...+|.+.+++..+| .|.+|+.+ ++.+..++-....+++++|- ++.+.|++++...
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 777887665555554 89999987 56777777666778888886 4456677666544
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.89 E-value=0.11 Score=58.60 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=99.9
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--cc------CCCCeEEEEEcC-----CC-
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 692 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~------h~~~I~~v~fsp-----~~- 692 (847)
.|.+...+....+.|++|+.| |=.++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777777789999999997 6669999999999999999877776552 22 235688998863 22
Q ss_pred --CEEEEEeCCCcEEEEECCC--CC-ce---EEEeccCCCCeEEEE-EecCC--------------------CeEEEEEe
Q 003106 693 --PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLD-FHPNK--------------------DDLICSCD 743 (847)
Q Consensus 693 --~~Lasgs~Dg~V~iWD~~~--~~-~~---~~~~~~h~~~V~sl~-fsp~g--------------------~~ll~s~s 743 (847)
-.|++|...|.|.+|.+.- .+ .. ......+.+.|..|. |+.+. ..+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3678999999999998751 11 11 112224667777666 32221 12454555
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEEe------cCCCEEEEEcCCCcEEEEcCCcc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNA------MNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~------~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
+..|||+...+.+..+........+..+.+ .....+.+...+|.++++..-..
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 678999999988876655533233322222 25677888999999999985543
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.22 Score=56.30 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=100.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..|.+.|..+. +....+. -......++|+++++.+..+.. +++|.+.|..+.+.+.+...-..+ ..++++|
T Consensus 95 ~~~v~vid~~~~---~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 95 SNTVSVIDTATN---TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred CCeEEEEcCccc---ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 567778885544 2222221 1126678999999988877765 688999999988888876544444 8999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCceEEE----eccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEE
Q 003106 691 SMPRLATSS-FDKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV 761 (847)
Q Consensus 691 ~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~ 761 (847)
++..++.+. .+++|.+.|... ....+. ...-......+.+.++|.++.++...+ +.|.+.|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999776665 789999999776 333320 112233456799999999877777665 6899999998876654
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.75 E-value=0.69 Score=52.78 Aligned_cols=205 Identities=17% Similarity=0.135 Sum_probs=106.9
Q ss_pred ceEEEecCCCeEeec----CCC----eEEeCCCCchhhcc-cccccc-CC-CCCceEEeeecCCCCCC------CCcEEE
Q 003106 557 PLMMFGTDGAGTLTS----PSN----QLWDDKDLELRADM-DRLVED-GS-LDDNVESFLSHDDTDPR------DAGGRG 619 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~----~~~----~iWD~~~~~~~~~~-~~~~~~-g~-~d~~v~~~~s~d~t~~~------d~~v~v 619 (847)
....+||||++++.+ |++ +++|+++++...+. ...... .. .++.-.+++...+...+ ...|.+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 356889999987653 333 78999999776542 111111 11 11111222222222222 667788
Q ss_pred EeccCCceeeEeEEeecCCCC--EEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceeEEEccCCCCeE-EEEE
Q 003106 620 MDVSQGFSFKEANSVRASTSK--VICCHFSSDGKLLATGGHD----KKAVLWHTDTL----KSKTNLEEHSSLIT-DVRF 688 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~----~~~~~l~~h~~~I~-~v~f 688 (847)
|.+.+... .....+.+.... ...+.+++|+++|+..+.. ..|.+.|+..+ .....+......+. .+..
T Consensus 207 ~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877632 212333333332 6788999999997764432 34778888764 23334433444443 3444
Q ss_pred cCCCCEEEEEe---CCCcEEEEECCCCCc--eEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 689 SPSMPRLATSS---FDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 689 sp~~~~Lasgs---~Dg~V~iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
. .+.+++... .++.|...++..... ....+..+...+.-..+...+.+|++..-.++ .|++||+..+.....
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 4 333444332 246677788887442 23355556664444444555667777766664 578889884444444
Q ss_pred Ee
Q 003106 762 FK 763 (847)
Q Consensus 762 ~~ 763 (847)
+.
T Consensus 365 ~~ 366 (414)
T PF02897_consen 365 IP 366 (414)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 355
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.75 E-value=0.52 Score=55.14 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=86.1
Q ss_pred EEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEccCCCCeE------EEEEc----CCCC--
Q 003106 644 CHFSSDGKLLATGGHDK------------------KAVLWHTDTLKSKTNLEEHSSLIT------DVRFS----PSMP-- 693 (847)
Q Consensus 644 l~fspdg~~Lasgs~Dg------------------~V~vwd~~~~~~~~~l~~h~~~I~------~v~fs----p~~~-- 693 (847)
.++.+.+.+++.++.|+ .|.-+|+++++.+..+..-...+. ...+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34444566777777665 799999999999887642111111 00111 1333
Q ss_pred -EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE-----------------EeCCCcEEEEECCC
Q 003106 694 -RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS-----------------CDGDGEIRYWSINN 755 (847)
Q Consensus 694 -~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s-----------------~s~Dg~V~iWD~~~ 755 (847)
.++.++.+|.|...|.++ ++.+-..... ...+..+| ..+++. ...+|.|...|+++
T Consensus 302 ~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 578888999999999999 5555443211 11133333 222221 12367899999999
Q ss_pred CceEEEEeeCC---------ceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 756 GSCTRVFKVES---------FCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 756 ~~~~~~~~~~~---------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
|+.+-...... .............++.+..+|.++.+|...
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 98776665431 111111112345677888889998888654
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.73 E-value=0.4 Score=52.70 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=98.6
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEECCCC----ceeE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCH---FSSD----GKLLATGGH----------DKKAVLWHTDTL----KSKT 674 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~---fspd----g~~Lasgs~----------Dg~V~vwd~~~~----~~~~ 674 (847)
.|++.|..+.... ....+.. ...|+|++ |..+ ..+|+.|.. .|.|.++++... ..+.
T Consensus 3 ~i~l~d~~~~~~~-~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVL-DSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEE-EEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEE-EEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4677776654222 2222332 33344443 3332 467777753 288999999873 1222
Q ss_pred EE--ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l--~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+ ....++|++|+-. ++ +|+++. ++.|++|++......+. .+......|.++....+ +++.|+....|.++
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~---~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN---YILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT---EEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc---EEEEEEcccCEEEE
Confidence 22 2457889998876 33 455444 58999999987441332 22223346777777644 56688877888877
Q ss_pred ECCC-CceEEEEee--CCceEEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 752 SINN-GSCTRVFKV--ESFCCWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 752 D~~~-~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
.++. ...+..+.. ....+.++.+. +...+..+...|.+.++..
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 5543 332333332 34456666555 4458888889999888763
No 357
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.002 Score=75.08 Aligned_cols=94 Identities=16% Similarity=0.291 Sum_probs=78.3
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC-cE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EI 748 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V 748 (847)
.+..++|..|....+|++|+-+.++|+.|+..|.|++|++.+ +.......+|.+.|+.|.-+.+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchH
Confidence 455667888999999999999999999999999999999998 7777888899999999999999998776665554 67
Q ss_pred EEEECCC-CceEEEEee
Q 003106 749 RYWSINN-GSCTRVFKV 764 (847)
Q Consensus 749 ~iWD~~~-~~~~~~~~~ 764 (847)
-+|++.+ +..++.|..
T Consensus 1170 aLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred HHhccccccCccccccc
Confidence 8999874 445555554
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.65 E-value=0.091 Score=60.16 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=75.7
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCC
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNPG 713 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW-D~~~~~ 713 (847)
....-....+.++|+|++++++ .||...||.....+.... +.-..++|... +.+|+-..+++|.|+ ++..
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~-- 99 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN-- 99 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE--
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcc--
Confidence 3344557899999999999995 478888888544444322 22356788884 457777778899996 3432
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.....+... ..+..|-. |. +|+..+ ++.|.+||+.+++.++.+.... |..+.+.+...+.+......+.+++
T Consensus 100 ~~~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA--VKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E---EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred ccceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC--CcEEEEECCCCEEEEEeCCeEEEEE
Confidence 222222211 12444433 55 443444 4589999999999999888653 5555555554444555555666665
No 359
>PHA02713 hypothetical protein; Provisional
Probab=96.65 E-value=0.054 Score=64.31 Aligned_cols=90 Identities=7% Similarity=0.089 Sum_probs=44.8
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeE--EEccCCCCeEEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKT--NLEEHSSLITDVRF 688 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~--~l~~h~~~I~~v~f 688 (847)
+..||..+. .|..+..+...... .+++. -++++++.||.+ ..|..||..+..-.. .+.........+.+
T Consensus 274 v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 274 ILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred EEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 345565554 44444333221111 12222 267788888754 347788877654221 11111111122222
Q ss_pred cCCCCEEEEEeCCC-----cEEEEECCC
Q 003106 689 SPSMPRLATSSFDK-----TVRVWDADN 711 (847)
Q Consensus 689 sp~~~~Lasgs~Dg-----~V~iWD~~~ 711 (847)
+++..+.||.++ +|.+||..+
T Consensus 351 --~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 351 --DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred --CCEEEEECCcCCCCCCceEEEEECCC
Confidence 466667777654 488899886
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.017 Score=66.68 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=84.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---e--EEE-ccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---K--TNL-EEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~--~~l-~~h~~~I~ 684 (847)
+...|.+.+++-..+... +....+-.+.+..+.++++..++|.|+..|.|.|+-+..... + ..+ +.|...|+
T Consensus 51 GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVT 128 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVT 128 (726)
T ss_pred ecccceEEEEecCchhhh--cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEE
Confidence 455667777776655221 122223455677778888989999999999999998764221 1 111 24778899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC---CceEEEeccCCCCeEEEEEecCCCeEEEEE
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~---~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
|++|++++..|++|..-|+|.+-.++.. ......+....+.|--|++.- .++|++.
T Consensus 129 al~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 129 ALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred EEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhh
Confidence 9999999999999999999998887761 111233333456676666653 3455443
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.096 Score=54.64 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=101.6
Q ss_pred eeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC------C------------CcEEEE
Q 003106 604 FLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH------D------------KKAVLW 665 (847)
Q Consensus 604 ~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~------D------------g~V~vw 665 (847)
+...++.....|.|-|||... .+..+..+..|.-.-..+.|.+||+.|+.+.. | -.+.+.
T Consensus 129 YATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 129 YATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 445556777888999999984 46778888888888889999999999988753 1 124444
Q ss_pred ECCCCceeEEE--c--cCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEECCCCCceEEEec-------cCCCCeEEEE
Q 003106 666 HTDTLKSKTNL--E--EHSSLITDVRFSPSMPRLATSSFDKT----VRVWDADNPGYSLRTFM-------GHSASVMSLD 730 (847)
Q Consensus 666 d~~~~~~~~~l--~--~h~~~I~~v~fsp~~~~Lasgs~Dg~----V~iWD~~~~~~~~~~~~-------~h~~~V~sl~ 730 (847)
|..++.++.+. . .+...|..++..+||+.++-|-..|- --+--...+++.+..+. .....|-+|+
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 54455544332 2 24456888888888876665543321 11111111133333221 1234677888
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 731 fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+.+...+.+|.-..+...+||..+|..+..-
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 88777766667767778899999999876544
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.39 Score=54.24 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCce
Q 003106 640 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYS 715 (847)
Q Consensus 640 ~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~---Dg~V~iWD~~~~~~~ 715 (847)
.-.+++++++++.++ +...+..|.+.|..+.+.+.....-. ....++|+++++.++.+.. +++|.+.|..+ ...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeE
Confidence 345778888888544 44456899999988777766654322 5678999999988877655 68899999887 444
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+.+...-..+ ..++++|+|..++++-..++.|.+.|.......+
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 4444333333 8899999999888777789999999987665553
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.55 E-value=0.33 Score=51.13 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--c--e--eEEEc-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--K--S--KTNLE-----EHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~--~--~~~l~-----~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.+..-.|++..++.++++--.++.+.++++... . . ...+. .+...+..|+|++.++.|+.+-...-.+|
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 356788999888877777666899999988421 1 1 11121 24566899999999888888877766777
Q ss_pred EECCC--CCceEEE--e------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---------
Q 003106 707 WDADN--PGYSLRT--F------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF--------- 767 (847)
Q Consensus 707 WD~~~--~~~~~~~--~------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~--------- 767 (847)
|.++. ....+.. . ......+.++.|+|...++++-.+.+..|.++| ..|+.+..+.-...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 76653 1122211 1 123456889999999888888888899999999 66877766654331
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
..-.++++....+|..++-..+++|
T Consensus 223 QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CccEEEECCCCCEEEEcCCceEEEe
Confidence 2334555566666666665544443
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=1.6 Score=49.81 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=34.1
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
.|++|+.... .+..+.--.+.|.++.|+.+. .|++...||+|++||+.
T Consensus 62 ~I~iys~sG~----ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGK----LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCC----EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 5788877654 333333233899999999765 45556689999999985
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.54 E-value=0.04 Score=66.51 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=91.6
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCceEEEec-
Q 003106 649 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (847)
Q Consensus 649 dg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~-I~~v~fsp-----~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~- 720 (847)
|.++|+.- .....|+-.|++.|+++..++.|... |.+++-.. +....+.|-.++.|..||.|-.+..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34444443 35678999999999999999988754 55543321 133467788899999999997543222111
Q ss_pred ---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 721 ---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 721 ---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.......|++-..+| .||.|+.+|.||+||--..+....|.+-+..|..+....+.....+.....+.+++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 234456777776665 46799999999999954333334455556777777665544444444444555555
No 366
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.39 E-value=0.24 Score=55.93 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=73.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------eeEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-------------------------------------------SKTNL 676 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-------------------------------------------~~~~l 676 (847)
.|+++.|+++..-|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999998643110 01112
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE-ecc------CCCCeEEEEEec---CCC----eEEEEE
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMG------HSASVMSLDFHP---NKD----DLICSC 742 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~------h~~~V~sl~fsp---~g~----~ll~s~ 742 (847)
....+.|++++.+ |-.++|.|..+|.+.|.|+|.+..+... +.. ....|+++.|.- .++ -++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346789999997 4449999999999999999874332221 122 245688898862 111 245577
Q ss_pred eCCCcEEEEECC
Q 003106 743 DGDGEIRYWSIN 754 (847)
Q Consensus 743 s~Dg~V~iWD~~ 754 (847)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 888999999875
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.37 E-value=0.56 Score=51.08 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=92.5
Q ss_pred eEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCC----CCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeE
Q 003106 601 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRAST----SKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKT 674 (847)
Q Consensus 601 v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~----~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~ 674 (847)
...|++....+.+...|.+||..+-....++..-..|. .....++++.||++++.... --.|.|.|+..++.+.
T Consensus 53 a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 53 AETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 34456666667778889999998752222222211111 12335688899999888754 3579999999999988
Q ss_pred EEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEe----ccCCCCe-EEEEEecCCCeEEEEEeCCCcE
Q 003106 675 NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF----MGHSASV-MSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~----~~h~~~V-~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
++..-. |.-.-|. ...|.+-|.||++....++..++...+. ..-...+ ..-.+...+.+++ ..+.+|.|
T Consensus 133 ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v 207 (342)
T PF06433_consen 133 EIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNV 207 (342)
T ss_dssp EEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEE
T ss_pred eecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE-EEecCCEE
Confidence 875332 2222233 2468889999999999998656554322 1122222 2334444444444 46788999
Q ss_pred EEEECCCCc
Q 003106 749 RYWSINNGS 757 (847)
Q Consensus 749 ~iWD~~~~~ 757 (847)
+-.|+....
T Consensus 208 ~~~dlsg~~ 216 (342)
T PF06433_consen 208 YSADLSGDS 216 (342)
T ss_dssp EEEEETTSS
T ss_pred EEEeccCCc
Confidence 998888664
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.35 E-value=0.11 Score=57.96 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=98.0
Q ss_pred cceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccC-CCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 556 KPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDG-SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g-~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...+.|||||++++....+ +.+.+.. ..... ........-+...|.....-.+.++|+.++... .
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~ 172 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------YSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-E 172 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------ESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-E
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeec---------cCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-E
Confidence 4678999999998774332 2211100 00000 011111222222222223334567888777322 2
Q ss_pred eEEe---ecCCCCEEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCceeEEEcc-CCCCe---EEEEEc-CCCC-EEE
Q 003106 631 ANSV---RASTSKVICCHFSSDGKLLATG--GHDK---KAVLWHTDTLKSKTNLEE-HSSLI---TDVRFS-PSMP-RLA 696 (847)
Q Consensus 631 ~~~l---~~h~~~V~~l~fspdg~~Lasg--s~Dg---~V~vwd~~~~~~~~~l~~-h~~~I---~~v~fs-p~~~-~La 696 (847)
+... ..-...+..+.|.+|++.|+.. ..+. .|.++|+.++.+...++. ....| ..+.|. +++. +|.
T Consensus 173 ~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 173 LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 2222 3445678899999999844433 3332 466778877665444432 22333 355665 6665 445
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPNKDDLICSCDGDG----EIRYWSIN 754 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~g~~ll~s~s~Dg----~V~iWD~~ 754 (847)
....||.-+||-++..+...+.+....-.|.. +.|+++++.+++++..++ .|..-++.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55578876666555444555666655666754 778888888887887643 44444555
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.34 E-value=0.11 Score=61.81 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe------CCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC-CcEEEE
Q 003106 637 STSKVICCHFSSDGKLLATGG------HDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVW 707 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs------~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D-g~V~iW 707 (847)
....+.+.++++||+.++..- .|.. |.+++.. +.. ..+.. ....++-.|+|+|+.|++.+.. ..+++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999887765 2444 4444542 222 33322 2237889999999888777533 222332
Q ss_pred -----------ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 708 -----------DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 708 -----------D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+++. +.... .....|..+.|+|||.++++.. ++.|.|
T Consensus 425 ~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 3332 11111 2345799999999999887665 467776
No 370
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.0021 Score=75.32 Aligned_cols=146 Identities=15% Similarity=0.187 Sum_probs=90.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEc-----cCCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLE-----EHSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~-----~h~~~I~~ 685 (847)
.+.+++-+..+. ......+++..+.|-+++|-. +...++ -.-|.+.|||++ .|+....+. .....+.-
T Consensus 110 ~~~vrvaN~~~s--m~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPS--MRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcch--hHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcce
Confidence 344555554432 112234567788898998865 333333 334778999987 454433322 22233444
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEE-----------ecCCCeEEEEEeCCCcEEEE
Q 003106 686 VRFSP---SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF-----------HPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 686 v~fsp---~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~f-----------sp~g~~ll~s~s~Dg~V~iW 751 (847)
|.|+| +.-+++.+..+++|++..+.+.. ...|.+|...+..++| +|||. +|++.+.||.|++|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFY 262 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCcccee
Confidence 55554 55677777889999988877522 2445567776665554 78887 56688889998888
Q ss_pred EC-----CCCceEEEEeeCC
Q 003106 752 SI-----NNGSCTRVFKVES 766 (847)
Q Consensus 752 D~-----~~~~~~~~~~~~~ 766 (847)
-+ +.-+|.+.++.|.
T Consensus 263 Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeccccHhhhhccCCCC
Confidence 55 3346777888776
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.015 Score=66.29 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~-sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..|.-+.|+|....||++..+|.|.+..+. ...+.++.-|...|+ +++|.|||+ +++.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 457789999999999999999999888776 345666665666666 999999987 7889999999999999998877
Q ss_pred EE
Q 003106 760 RV 761 (847)
Q Consensus 760 ~~ 761 (847)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 66
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.27 E-value=0.52 Score=52.23 Aligned_cols=194 Identities=19% Similarity=0.159 Sum_probs=90.3
Q ss_pred eEEEecCCCeEeecCCC------eEEeCCCCchhhccc-----cccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc
Q 003106 558 LMMFGTDGAGTLTSPSN------QLWDDKDLELRADMD-----RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~------~iWD~~~~~~~~~~~-----~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~ 626 (847)
-.+|.+||+.++..+.. .+.|+.+++...--+ .+....+-+.....++. ....++..|+.+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~------~~~~l~~vdL~T~- 112 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK------NGRSLRRVDLDTL- 112 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE------TTTEEEEEETTT--
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE------CCCeEEEEECCcC-
Confidence 34889999887774432 456777765432111 00000011111112222 1246677777765
Q ss_pred eeeEeEEeecCCCCEEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCceeEEEccCCCC
Q 003106 627 SFKEANSVRASTSKVICCHF--SSDGKLLATGGH----------------------DKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~f--spdg~~Lasgs~----------------------Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
++...+......+-...| +.|+++++..-. ...|...|+.+++....+ .....
T Consensus 113 --e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~w 189 (386)
T PF14583_consen 113 --EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDW 189 (386)
T ss_dssp ---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-
T ss_pred --cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCcc
Confidence 333333444555544455 346666554321 123555677777765444 35667
Q ss_pred eEEEEEcCCCCEEEEEe----CCCc-EEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEe----CCCcEEEE
Q 003106 683 ITDVRFSPSMPRLATSS----FDKT-VRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCD----GDGEIRYW 751 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs----~Dg~-V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s----~Dg~V~iW 751 (847)
+..+-|+|....+++=| .|.. -|||-+++.+.-++.+..+.. .+..=-|.+||..++.-.- .+..|.-+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 88999999866554433 3442 588988876666666655432 3445568999988765332 24467778
Q ss_pred ECCCCceEEE
Q 003106 752 SINNGSCTRV 761 (847)
Q Consensus 752 D~~~~~~~~~ 761 (847)
|+.+++....
T Consensus 270 d~~t~~~~~~ 279 (386)
T PF14583_consen 270 DPDTGERRRL 279 (386)
T ss_dssp -TTT--EEEE
T ss_pred CCCCCCceEE
Confidence 8888865443
No 373
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.0023 Score=74.93 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE-----------EcCCCCEEEEEeCCCcE
Q 003106 639 SKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTV 704 (847)
Q Consensus 639 ~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~-----------fsp~~~~Lasgs~Dg~V 704 (847)
..+.-|.|+| +.-++..+-.+++|+|.++++... ..|.+|..++++++ .+|||+.|++++.||.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3334444544 667888888899999877764322 34556776666554 58899999999999999
Q ss_pred EEEECCCC----CceEEEeccCCC-CeEEEEEecC-------CCe-EEEEE-eCCCcEEEEECCCCceE
Q 003106 705 RVWDADNP----GYSLRTFMGHSA-SVMSLDFHPN-------KDD-LICSC-DGDGEIRYWSINNGSCT 759 (847)
Q Consensus 705 ~iWD~~~~----~~~~~~~~~h~~-~V~sl~fsp~-------g~~-ll~s~-s~Dg~V~iWD~~~~~~~ 759 (847)
+.|-+.-. -.|+..++.|.. .-.|.-|+.. +.+ +++++ ..+..+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 98876432 234556666763 2222224322 122 22333 34578999998888887
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.19 E-value=0.23 Score=44.97 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=62.1
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 683 ITDVRFSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 683 I~~v~fsp---~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+++++.. +| +.|++||.|..||||+-+. .+..+.. .+.|++|+-...+ .|+.+-.+|+|.+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcc--e
Confidence 45555543 43 4899999999999998753 5666654 4568888776663 466888899999997532 2
Q ss_pred EEEEeeCCceEEEEEec-----CCCEEEEEcCCCcEE
Q 003106 759 TRVFKVESFCCWCVNAM-----NRPCLWDKLDAGDIQ 790 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~-----~~~~l~~~~~~g~i~ 790 (847)
+-..+.... +.++... ....+..+-.+|.|.
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222222 4444332 233566777777664
No 375
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.2 Score=56.07 Aligned_cols=189 Identities=15% Similarity=0.200 Sum_probs=109.9
Q ss_pred ceEEEecCCCeEeecCCCeEEeCCC---CchhhccccccccCCC--CCceEEeeecCC-----CCCCCCcEEEEeccCCc
Q 003106 557 PLMMFGTDGAGTLTSPSNQLWDDKD---LELRADMDRLVEDGSL--DDNVESFLSHDD-----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~~iWD~~~---~~~~~~~~~~~~~g~~--d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~ 626 (847)
..+.|-.+-.++.-++.+.++...+ .++...+..+...++- +..-.+....|. .++....+.-.|++.|
T Consensus 422 L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG- 500 (776)
T COG5167 422 LVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG- 500 (776)
T ss_pred EEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc-
Confidence 3455556666666666666665433 2344444444333222 211111111111 4556667777888877
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcC----CCCE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP----SMPR 694 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~-------~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp----~~~~ 694 (847)
+.+..+.-|... -+.|.|+.+ .-++|-.|..|.-.|.+ .+..+. .......++.-.|+. ...+
T Consensus 501 --kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGy 575 (776)
T COG5167 501 --KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGY 575 (776)
T ss_pred --eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-eeeehhccccccccccccccCce
Confidence 555555555554 467777432 22334445566555655 232222 222333344444443 3449
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
||.++..|.||+||.-. ......+.+-...|..|....+|+++|||| ..+|.+-|++
T Consensus 576 Ia~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 576 IAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred EEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 99999999999999754 333444566778899999999999999888 4688888875
No 376
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.10 E-value=0.0096 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcCCCC
Q 003106 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (847)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (847)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5668999999999999999999999997654
No 377
>PRK10115 protease 2; Provisional
Probab=96.10 E-value=0.99 Score=55.05 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=69.5
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D-----KTVRVWD 708 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-D-----g~V~iWD 708 (847)
.+..+.|+||+++|+.+.+. ..|+|.|+.+++.+........ ..++|.+|++.|+.+.. + ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988864433222222 46999999986655443 2 3688888
Q ss_pred CCCCC-ceEEEeccCCCCeE-EEEEecCCCeEEEEEeC--CCcEEEEEC
Q 003106 709 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSI 753 (847)
Q Consensus 709 ~~~~~-~~~~~~~~h~~~V~-sl~fsp~g~~ll~s~s~--Dg~V~iWD~ 753 (847)
+.++. .....+.+...... .+..+.+++.+++.+.. ++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88741 23334443333333 33334477776655443 467899985
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.062 Score=60.27 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE-------EEEEeCCCcEEEEECCCCCc-eEEEe
Q 003106 649 DGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-------LATSSFDKTVRVWDADNPGY-SLRTF 719 (847)
Q Consensus 649 dg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~-------Lasgs~Dg~V~iWD~~~~~~-~~~~~ 719 (847)
+.++| .++..-..|+-.|++.|+.+.+++-|.+ |+-+.|.|+.+. -+.|-.|..|.-||.|-.+. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44544 4455567788899999999999988776 888888887542 25566799999999986444 23332
Q ss_pred ccC----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 720 MGH----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 720 ~~h----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
.+| .....|.+-..+| .+|.|+.+|.||+||--.-.....|.+-...|.-+...
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence 333 2234444444443 67799999999999973222333444555555555443
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.04 E-value=0.24 Score=56.69 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCCEEEEEEcC----CCCEEEEEeCCCcEEEEECC-----CCceeEEEccC---CCCe--EEEEEcCCCCEEEEEeCCCc
Q 003106 638 TSKVICCHFSS----DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEEH---SSLI--TDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 638 ~~~V~~l~fsp----dg~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~h---~~~I--~~v~fsp~~~~Lasgs~Dg~ 703 (847)
-..|..+.|.| |...|+..-..+.|.||-+. +.+.+..-..+ .-+| -.+.|+|....|+.-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 35688999998 34356666778899999875 22333222211 1112 35779999988877766665
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
-.+++++.....++.-....+.|.|.+|..||.+++++.+..=.-+|||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5667777644444433345678999999999999998887766788998643
No 380
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.84 E-value=0.62 Score=56.54 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCce---eEEE--------ccCCCCeEEEEEcCC---CCE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKS---KTNL--------EEHSSLITDVRFSPS---MPR 694 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---------~~~~---~~~l--------~~h~~~I~~v~fsp~---~~~ 694 (847)
.-.|..|.++++|++|+..|..|.+.+.=.+ .++. .+++ ..+...|..+.|+|. +.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468889999999999999886654442211 1111 1121 134467999999997 478
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
|+.-..|++||+||+.....+..++
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 9999999999999998755554444
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.078 Score=64.30 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=83.8
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeE-----EEc------cCCCCeEEEEEcCCCC-EEEEEeCCCcEE
Q 003106 640 KVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 705 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasg--s~Dg~V~vwd~~~~~~~~-----~l~------~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~ 705 (847)
.|..+...+|++..++. +.+-.|.+||+++....+ -|. .....+.|+.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34455555676655443 344478899987532211 121 2234567889998744 457777899999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNR 777 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~ 777 (847)
|..+......+..+ .....+++|+|+|.|+-++ .|...|++.-|...- +..+.+.+. ...|.|+.+...
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecc
Confidence 98886533333443 2456789999999998655 888889998887653 333333321 345666665543
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.73 E-value=2.2 Score=45.55 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=80.8
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--------------ccCCCC
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--------------EEHSSL 682 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--------------~~h~~~ 682 (847)
+.++++......+.+.. ...|..|...++-+.|++-+ |+.|++++++........ ......
T Consensus 18 l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (275)
T PF00780_consen 18 LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKG 92 (275)
T ss_pred EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCC
Confidence 66677632222222222 22399999999877777665 599999998854443311 112233
Q ss_pred eEEEE--EcCCCCEEEEEeCCCcEEEEECCCC---C-ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 683 ITDVR--FSPSMPRLATSSFDKTVRVWDADNP---G-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 683 I~~v~--fsp~~~~Lasgs~Dg~V~iWD~~~~---~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+..++ -...+...+++...++|.||..... . ..++++. -...+.+++|..+ .++.|. .+...+.|+.++
T Consensus 93 v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~ 167 (275)
T PF00780_consen 93 VSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG 167 (275)
T ss_pred eeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence 44443 1123334444444668998887652 2 3445554 4477999999944 444554 446889999987
Q ss_pred ceEEEEe
Q 003106 757 SCTRVFK 763 (847)
Q Consensus 757 ~~~~~~~ 763 (847)
.....+.
T Consensus 168 ~~~~l~~ 174 (275)
T PF00780_consen 168 SPSELLD 174 (275)
T ss_pred CceEEeC
Confidence 7655553
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.72 E-value=0.031 Score=56.61 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=57.2
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEE-EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVR-FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~-fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~ 725 (847)
-+..|++|+.||.|++|...- +.....+..-...|.++. --.++.+.++++.||.||.|++.- .+.+.....|. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC
Confidence 356799999999999998762 222111212222333332 222445778899999999999986 55454444455 23
Q ss_pred eEEEEEecCCCeEEEEE--eCCCcEEEEECC
Q 003106 726 VMSLDFHPNKDDLICSC--DGDGEIRYWSIN 754 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~ 754 (847)
+..+.....++ +++.+ |.|..++.|++.
T Consensus 148 ~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 33333332222 22233 444455555544
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.69 E-value=0.79 Score=49.74 Aligned_cols=169 Identities=13% Similarity=0.143 Sum_probs=87.7
Q ss_pred EEEeccC-CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEE
Q 003106 618 RGMDVSQ-GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 618 ~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~La 696 (847)
.+|.... +.+++.+. ..-.+.|.++..++||++|+++..-..+.-||-....-...-+.-...|.++.|.|++...+
T Consensus 125 ~iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~ 202 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM 202 (302)
T ss_dssp -EEEESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE
T ss_pred cEEEeCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE
Confidence 3444443 34555443 34557899999999999999886655556787553222222223567899999999976555
Q ss_pred EEeCCCcEEEEECCCCCceEEE----eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceE
Q 003106 697 TSSFDKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCC 769 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v 769 (847)
....|.|++=|.......... +....-.+..|+|.++++ ++++|+ .|+| +.....|+.-...+. -...+
T Consensus 203 -~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 203 -LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNL 278 (302)
T ss_dssp -EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS--
T ss_pred -EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCce
Confidence 448888988873221111111 111223478999998865 665554 5544 455556654444432 13346
Q ss_pred EEEEecCCCEEEEEcCCCcEEEE
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
+.+.|.+...-|....+|.+.-|
T Consensus 279 ~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEEcCCCceEEECCCcEEEEe
Confidence 66667777788888888877654
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.69 E-value=0.64 Score=55.36 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred CEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE-
Q 003106 640 KVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV- 706 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~D------------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i- 706 (847)
..++-.|+|||+.|++.+.. +.|.+.+++.++... .....|..++|+|||.+|+... ++.|+|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 37788999998888877533 223333443333322 2345799999999999987766 577776
Q ss_pred --EECCCCCc-eE---EEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 707 --WDADNPGY-SL---RTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 707 --WD~~~~~~-~~---~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
-.... +. .+ ..+ .+-...+.+++|..++. |+ .+..++...+|.+.
T Consensus 474 ~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCC-CceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence 33222 32 11 112 22334468899999977 44 33434444455544
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.67 E-value=0.36 Score=49.15 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=85.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 707 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iW 707 (847)
+.+.++-..+|+|++++-.-.| |.++.|-.. -.+..+...-.--+.++|+.+.+.+ ++-+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 5667788889999985433222 344555433 1112222233334678898887766 555678889889
Q ss_pred ECC--CC----CceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC
Q 003106 708 DAD--NP----GYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 708 D~~--~~----~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
|.+ ++ ...+..++. ..-..-.++...+|. |++++-..++|...|..+|+.+.+++.....+.|++|...
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 843 31 122222322 011122344455555 6667777899999999999999999999888888887655
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.59 E-value=4.7 Score=47.62 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=47.0
Q ss_pred EEEcCCCCEEEEEeC-----CC-----------cEEEEECCCCceeEEEccCCCCeE---------EEEEcCCCC---EE
Q 003106 644 CHFSSDGKLLATGGH-----DK-----------KAVLWHTDTLKSKTNLEEHSSLIT---------DVRFSPSMP---RL 695 (847)
Q Consensus 644 l~fspdg~~Lasgs~-----Dg-----------~V~vwd~~~~~~~~~l~~h~~~I~---------~v~fsp~~~---~L 695 (847)
+.+.+...+|+.+.. ++ .|.-.|+++|+.+..+......+. -+++..+|+ .+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 456665666666541 22 577789999999887764222222 223334665 67
Q ss_pred EEEeCCCcEEEEECCCCCceE
Q 003106 696 ATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~ 716 (847)
+.+..+|.+.+.|.++ ++.+
T Consensus 319 ~~~~K~G~~~vlDr~t-G~~i 338 (527)
T TIGR03075 319 AHADRNGFFYVLDRTN-GKLL 338 (527)
T ss_pred EEeCCCceEEEEECCC-Ccee
Confidence 7899999999999998 4543
No 388
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.54 E-value=3.9 Score=43.13 Aligned_cols=122 Identities=11% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 632 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
..+.+-...|..|+|.|+.+ ++++....+.|..++.+ ++.++++.-. .+....|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34455566799999999765 55556667788888864 7888877533 356889999887766666656999999998
Q ss_pred CCCCce-----EEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 710 DNPGYS-----LRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 710 ~~~~~~-----~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...... +..+ ..+...+-.|+|++.+.+++++.- ..-.+||.++.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNG 148 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEES
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEcc
Confidence 442211 1112 124456899999999888886654 44566666653
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.35 Score=50.60 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=90.2
Q ss_pred EEEEEEcCC-CCEEEEEeCCCc-EEEEECCCCceeEEEccCCCC--eEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 003106 641 VICCHFSSD-GKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLATSSFD-----KTVRVWDADN 711 (847)
Q Consensus 641 V~~l~fspd-g~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~--I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~ 711 (847)
...|+|+|. .+-++.+-.-|+ ..|+|........++...++. --.-.||+||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 335778884 345666655565 478888876655554322221 1123599999999876543 6799999998
Q ss_pred CCceEEEeccCCCCeEEEEEecCCCeEEEEEeC------CC-----------cEEEEECCCCceEEEEee----CCceEE
Q 003106 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG------DG-----------EIRYWSINNGSCTRVFKV----ESFCCW 770 (847)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~------Dg-----------~V~iWD~~~~~~~~~~~~----~~~~v~ 770 (847)
....+.++..|.-....|.|.+||+.+++..+. -| .+.+.|..+|..+....- +...+.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 667788888898888999999999976655430 01 233444445544332221 223455
Q ss_pred EEEecCCCEEEEEc
Q 003106 771 CVNAMNRPCLWDKL 784 (847)
Q Consensus 771 ~~~~~~~~~l~~~~ 784 (847)
-++...+..+|.++
T Consensus 230 Hld~g~dgtvwfgc 243 (366)
T COG3490 230 HLDIGRDGTVWFGC 243 (366)
T ss_pred eeeeCCCCcEEEEE
Confidence 55566666666654
No 390
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.45 E-value=3.5 Score=44.06 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=109.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-ceeEEEcc-----CCCCeEEEEEcCCCC------------EEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTD------TL-KSKTNLEE-----HSSLITDVRFSPSMP------------RLA 696 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~------~~-~~~~~l~~-----h~~~I~~v~fsp~~~------------~La 696 (847)
-+.|+|+|.+.+-++....++..+||.. .. .++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999988888888888999999986 11 23334432 234578888875322 367
Q ss_pred EEeCCCcEEEEECCCCCc----eEEEec-cCCCCeE-EEEEecC--CCeEEEEEeCCCcEEEEECCCCceE--EEEeeC-
Q 003106 697 TSSFDKTVRVWDADNPGY----SLRTFM-GHSASVM-SLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKVE- 765 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~----~~~~~~-~h~~~V~-sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~--~~~~~~- 765 (847)
.+++||+|.-|.-.-... ....+. ...+.|+ .+++... +..|.++--..++|.|||-.-.+.. ..|...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532111 122222 2224443 5665533 5566666667899999986532211 011110
Q ss_pred -------------CceEE-EEE--ecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-----cc
Q 003106 766 -------------SFCCW-CVN--AMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-----RS 824 (847)
Q Consensus 766 -------------~~~v~-~~~--~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~ 824 (847)
...++ ..+ ......-..+...|.|.+|+..- .++.++. +....-..|-+.. ..
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l~~r~a---s~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QLLRRVA---SSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cEEEEec---cCCcccCCceeeeChhhhCC
Confidence 00000 000 00111222344456677777442 2222221 2222334455543 44
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+|+---+||+|.+||.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred CCCCeEEeecCCceeEEecC
Confidence 45677888889999999995
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.39 E-value=4.4 Score=42.80 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceE
Q 003106 641 VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL 716 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~ 716 (847)
.-.+.|..+|.++-+.+.-| .|+.+|+++++......-. ...-..|.+. ++.|+--. .++.+.+||..+ ...+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEE
Confidence 33778877888888888766 7999999999887665422 2223344444 34555444 588999999998 6677
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.++. ..+.-+.|+ .++..+++|-+ ...|+++|.++.+.++.+..
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence 7774 335567777 45666775544 66899999998877776654
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.22 E-value=0.97 Score=53.80 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=73.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C-----cEEEEECCCCceeE--EEccCCCCeEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K-----KAVLWHTDTLKSKT--NLEEHSSLITDV 686 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g-----~V~vwd~~~~~~~~--~l~~h~~~I~~v 686 (847)
..+..+|..++ .+.....+..... -.++++. ++.+.++||.| | +|..||..+.+-.. .+.......-.+
T Consensus 301 ~~ve~yd~~~~-~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTN-EWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcC-cEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 34556666665 4555554442222 3344444 56788999988 3 56778877655322 121111111111
Q ss_pred EEcCCCCEEEEEeCCCc-----EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC------cEEEEECCC
Q 003106 687 RFSPSMPRLATSSFDKT-----VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG------EIRYWSINN 755 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~-----V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg------~V~iWD~~~ 755 (847)
.+ +|...|+|+.||. |-.||.++..... .........+.....-+..+.+.|+.|+ +|..||..+
T Consensus 378 ~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 378 VL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred EE--CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 11 4667788888874 7788887633221 1111112222332232345777777553 577888887
Q ss_pred CceE
Q 003106 756 GSCT 759 (847)
Q Consensus 756 ~~~~ 759 (847)
+...
T Consensus 454 ~~W~ 457 (571)
T KOG4441|consen 454 NTWT 457 (571)
T ss_pred Ccee
Confidence 6543
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=2.5 Score=44.86 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
+.+-+..|.++.|+|+.+.|++......-.||=...|..++++.-. -.....|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999999888888888877789999887521 123456777777777777777888888877653
Q ss_pred CceE---------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 713 GYSL---------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 713 ~~~~---------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...+ ............++|+|....++++-- -.-++||.+..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~ 211 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQ 211 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEec
Confidence 2211 111112456788999999888875544 45677776653
No 394
>PRK13684 Ycf48-like protein; Provisional
Probab=95.09 E-value=5.6 Score=44.07 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=91.9
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceeEEE-ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL-WHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~v-wd~~~~~~~~~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.++..+.. .-...+.++.+.+++.+++++ ..|.+.. +| +.++....+ ..-...++++.+.++++.++++ ..|
T Consensus 161 G~tW~~~~~--~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G 235 (334)
T PRK13684 161 GKNWEALVE--DAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGG 235 (334)
T ss_pred CCCceeCcC--CCcceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCC
Confidence 345554433 225678999999988777665 4565543 22 222222222 2334678999999998766655 467
Q ss_pred cEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceEEEEEec
Q 003106 703 TVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCCWCVNAM 775 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v~~~~~~ 775 (847)
.+++=+.+. +........ -...++++.|.+++. ++ .++.+|.|. .....++.-..... -....+.+.+.
T Consensus 236 ~~~~~s~d~-G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 236 QIRFNDPDD-LESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred EEEEccCCC-CCccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 665322332 332222111 123478899998765 55 444567554 44444443333321 12245556666
Q ss_pred CCCEEEEEcCCCcEEEEcC
Q 003106 776 NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~ 794 (847)
+....|.....|.|..++.
T Consensus 312 ~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCceEEECCCceEEEecC
Confidence 6777888888888887764
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.95 E-value=0.71 Score=54.63 Aligned_cols=124 Identities=13% Similarity=0.175 Sum_probs=77.6
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEc--CCCCEEEEEeCCCcE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fs--p~~~~Lasgs~Dg~V 704 (847)
+....++...-..+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.+++|. |++..+++.|....|
T Consensus 19 w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred EEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 33444444444455555555545444444444579999999776543322 446789999995 578889999999999
Q ss_pred EEEECC-----CCC---ceEEEe--ccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 705 RVWDAD-----NPG---YSLRTF--MGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 705 ~iWD~~-----~~~---~~~~~~--~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+|.-. +.. ..++.+ ..|+ ..|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 998542 111 122222 2333 5788999999986 44333 3578888754
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.91 E-value=3.1 Score=44.31 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE--------
Q 003106 648 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 718 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~-------- 718 (847)
..++.|+.|+.+| |.++++. ..+..... +...|..|...++-+.|++-+ |+.|+++|+.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3678999999998 9999983 33333333 233399999999888777766 599999998762221100
Q ss_pred -----eccCCCCeEEEE--EecCCCeEEEEEeCCCcEEEEECCCC-----ceEEEEeeCCceEEEEEec
Q 003106 719 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 719 -----~~~h~~~V~sl~--fsp~g~~ll~s~s~Dg~V~iWD~~~~-----~~~~~~~~~~~~v~~~~~~ 775 (847)
.......|...+ -...+...|+.+ ...+|.||..... +..+.+... ..+.++.+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~ 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe
Confidence 111222344333 112334444333 3568998887653 344555544 334445544
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.041 Score=55.74 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeec-CCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRA-STSKVIC-CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~-l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v 686 (847)
.+..++.|.+|...-. .....+.. -...|.| |.-..++.+.++++.||.||.|++...+.+.....|. ..+..+
T Consensus 75 vG~~dg~v~~~n~n~~---g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLE---GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eecccceEEEecCCcc---chHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 5667888888776521 11111111 1122222 2223366689999999999999999888887777777 556666
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEECCC
Q 003106 687 RFSPSMPRLATS--SFDKTVRVWDADN 711 (847)
Q Consensus 687 ~fsp~~~~Lasg--s~Dg~V~iWD~~~ 711 (847)
..+..++.|+++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666666777776 7777788887764
No 398
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.78 E-value=3.9 Score=45.58 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCCCCceEE
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLR 717 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs----p~~~~--Lasgs-~D---g~V~iWD~~~~~~~~~ 717 (847)
|...+|+....++-+.+||++ |+.+..+. .+.++.|+.. -.++. |+.++ .+ .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 355678888888899999998 56656664 2334444332 13432 44444 32 4699998863223344
Q ss_pred Eecc-------CCCCeEEEEEe--c-CCCeEEEEEeCCCcEEEEECC---CC----ceEEEEeeCCceEEEEEecCCCEE
Q 003106 718 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 718 ~~~~-------h~~~V~sl~fs--p-~g~~ll~s~s~Dg~V~iWD~~---~~----~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.+.. ....++.+|+- + +|..+++....+|.+.-|.+. .+ +.++.|...+..--|+.-+....+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778873 3 456666677889999888774 33 467888887776677777778899
Q ss_pred EEEcCCCcEEEEcCCccc---ceee-ecccccCCCCcc-ccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 781 WDKLDAGDIQISDSLFIN---ANIF-CGLGWYGSDEIP-APSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~---~~~~-~~~~~~~~~~~~-~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|.+.++.-|..|+..... ...+ ...+.....++. ..+|.- ....+-+|+|.-++++..||+.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--SDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---CCC-EEEEEEEGGGTEEEEEES
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--CCCCeEEEEEcCCCCeEEEEec
Confidence 999898888777744221 1112 111111111221 112221 1112335666668889999985
No 399
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.72 E-value=8.9 Score=42.75 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred cEEEEECCCCceeE-EE----ccCCCCeEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCCceEEEeccCCCCe---E
Q 003106 661 KAVLWHTDTLKSKT-NL----EEHSSLITDVRFSPSMPRLATS--SFDK---TVRVWDADNPGYSLRTFMGHSASV---M 727 (847)
Q Consensus 661 ~V~vwd~~~~~~~~-~l----~~h~~~I~~v~fsp~~~~Lasg--s~Dg---~V~iWD~~~~~~~~~~~~~h~~~V---~ 727 (847)
.|.|+|+.+++... .+ ..-...+..+.|.++++.|+.. ..+. .|.++|+.+....+.........| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 46678888776532 11 1234568999999999844433 3332 367778876322222222222222 3
Q ss_pred EEEEe-cCCCeEEEEEeCCCcEEEE--ECCCCceEEEEeeCCceEE
Q 003106 728 SLDFH-PNKDDLICSCDGDGEIRYW--SINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 728 sl~fs-p~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~~~~~~~~v~ 770 (847)
.+.|. +++..+|.....||.-+|| |...+. .+.+....-.|.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~ 283 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVT 283 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeec
Confidence 56665 7777777777788865555 555454 345554444443
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.68 E-value=0.095 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS 672 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~ 672 (847)
...|.+++|+|...+||.|..||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 401
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.64 E-value=2.1 Score=50.47 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccC--C--CCeEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCCceEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~--~~I~~-v~fsp~~~~Lasgs------~Dg~V~iWD~~~~~~~~~~ 718 (847)
+..|+.++.|+.|..+|.++++.+..+... . ..+++ -.+. ++ .|+.+. .+|.|+.+|+++ ++.+-.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCC-CceeEe
Confidence 356777888999999999999998776421 1 11221 1111 33 455543 268999999998 555443
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.93 Score=55.56 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
.-+.|+.|.|.- ...+.+..|+.|+|..+.-. ..+..+ .-...++||+|+|.|+.|+.|-..|++.-|...- .+.
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--eik 232 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--EIK 232 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc--cee
Confidence 446688898843 34667778999999877632 222232 2445689999999999999999999999887653 222
Q ss_pred EEecc----CCCCeEEEEEecCCCeEEEEE
Q 003106 717 RTFMG----HSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 717 ~~~~~----h~~~V~sl~fsp~g~~ll~s~ 742 (847)
..+.+ ....|.+|+|-....++++-+
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 32221 146799999998766555433
No 403
>PRK10115 protease 2; Provisional
Probab=94.37 E-value=5.4 Score=48.70 Aligned_cols=175 Identities=10% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCC--ceeEEEccCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTL--KSKTNLEEHSS 681 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~--~~~~~l~~h~~ 681 (847)
.+.....+++.|+.++..+ ...+.+ .-..++|++|++.|+.+..| ..|+++++.++ +-...+.....
T Consensus 148 ~G~E~~~l~v~d~~tg~~l--~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~ 222 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWY--PELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD 222 (686)
T ss_pred CCcEEEEEEEEECCCCCCC--CccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC
Confidence 3444455667777665211 111111 11458999999877665442 36788888877 44444543333
Q ss_pred CeE-EEEEcCCCCEEEEEe---CCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-C--cEEEEEC
Q 003106 682 LIT-DVRFSPSMPRLATSS---FDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSI 753 (847)
Q Consensus 682 ~I~-~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g--~V~iWD~ 753 (847)
... .+..+.++++++..+ .++.+.+|+.... +.....+..-......+. +.. ..+++....+ . .|...++
T Consensus 223 ~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~ 300 (686)
T PRK10115 223 TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRV 300 (686)
T ss_pred CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecC
Confidence 333 344455787765443 3567999996432 222222222222223332 333 3344333322 2 3444455
Q ss_pred C-CCceEEEEeeC-CceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 754 N-NGSCTRVFKVE-SFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 754 ~-~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
. .++....+... ...+..+....+..++....++.-.+
T Consensus 301 ~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l 340 (686)
T PRK10115 301 RDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSL 340 (686)
T ss_pred CCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEE
Confidence 4 22222223331 23455555555555556655655333
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.25 E-value=7.2 Score=44.54 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=60.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CC
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SA 724 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~ 724 (847)
++.+....+....++.|.+.+....+. +. ..+.|..|++||++++||.-..+|.+.|.+.+- ...+..+... ..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecCcCC
Confidence 344444555555555555444332211 21 235799999999999999999999999998765 4455555433 45
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
....+.|+-+.. +++.- +..|.++..
T Consensus 261 ~p~~~~WCG~da-v~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 261 PPKQMAWCGNDA-VVLSW--EDELLLVGP 286 (410)
T ss_pred CCcEEEEECCCc-EEEEe--CCEEEEECC
Confidence 667777876533 22222 345555553
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.14 Score=62.04 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
+..++.|++.|.|...|.+..-..+..-....++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..+......
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456888888999999988763221222233567899999999987 5558888999999999999988888766543332
Q ss_pred E----EecCCCEEEEEcCCCc
Q 003106 772 V----NAMNRPCLWDKLDAGD 788 (847)
Q Consensus 772 ~----~~~~~~~l~~~~~~g~ 788 (847)
+ .......++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 2 2223334555555553
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.17 E-value=4.9 Score=49.35 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCC--------eEEEEEcC----------------CCCEEEEEeCCCcEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 705 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~--------I~~v~fsp----------------~~~~Lasgs~Dg~V~ 705 (847)
+..|+.|+.++.|.-.|.++++.+..+...... ...+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788889999999999888777532211 11233321 345788899999999
Q ss_pred EEECCCCCceEEEeccCCCCeE-------------EEEEec--CCCeEEEEEeC----------CCcEEEEECCCCceEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 760 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~-------------sl~fsp--~g~~ll~s~s~----------Dg~V~iWD~~~~~~~~ 760 (847)
-.|.++ ++.+..|. ..+.|. .+.-.| .+..++ .++. +|.|+-+|+++|+.+-
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998 56555542 211110 011111 123344 4432 5889999999999887
Q ss_pred EEee
Q 003106 761 VFKV 764 (847)
Q Consensus 761 ~~~~ 764 (847)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7653
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.00 E-value=0.87 Score=51.00 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCC--CCE-EEEEeCCCcEEEEEC-CCCc----eeEEEccC---
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD--GKL-LATGGHDKKAVLWHT-DTLK----SKTNLEEH--- 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspd--g~~-Lasgs~Dg~V~vwd~-~~~~----~~~~l~~h--- 679 (847)
....+.+||+.+. +.+.++. .....+..|+|..+ ..+ |+.+.-..+|..|-- +.++ .+..+...
T Consensus 220 yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 220 YGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 3567899999987 3444443 22234667888764 333 333334455555433 3332 12222110
Q ss_pred --------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEe---ccC---------------CCCe
Q 003106 680 --------------SSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTF---MGH---------------SASV 726 (847)
Q Consensus 680 --------------~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~---~~h---------------~~~V 726 (847)
..-|++|.+|.|.++|+.++ .+|.||.||+..+.....+- .|- .+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 24589999999999997776 59999999998865543322 110 1223
Q ss_pred EEEEEecCCCeEEEEEe
Q 003106 727 MSLDFHPNKDDLICSCD 743 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s 743 (847)
.-|..+-||+++.+|.|
T Consensus 377 qMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTSSEEEEE--
T ss_pred CeEEEccCCeEEEEEee
Confidence 55777888888887765
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.99 E-value=0.56 Score=53.00 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=66.2
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecC-----------------CC
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPN-----------------KD 736 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~-----------------g~ 736 (847)
.|......+.+|..+|++++.|+...=|.|.|+|+.+ +..++.++|-.+.=.. +..... .-
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3445556689999999998888887889999999998 7888888876554211 111111 11
Q ss_pred eEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 737 DLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 737 ~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
.|++-.-.-|.|.||+++.|..+..+.....
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 2445566789999999999999988876544
No 409
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.93 E-value=9.2 Score=47.42 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred CCCCEEEEEEc---C----CCCEEEEEeCCCcEEEEECC------C---------CceeEEEcc---CCCCeEEEEEcCC
Q 003106 637 STSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSPS 691 (847)
Q Consensus 637 h~~~V~~l~fs---p----dg~~Lasgs~Dg~V~vwd~~------~---------~~~~~~l~~---h~~~I~~v~fsp~ 691 (847)
-..+|..|+|. . ..++|++= ....+.|+... . ..++.++.. ......+|+|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45677777777 2 12344443 44556666511 1 123344432 2345789999985
Q ss_pred -CCEEEEEeCCCcEEEEECCC----CCceEEEeccCC----------CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 692 -MPRLATSSFDKTVRVWDADN----PGYSLRTFMGHS----------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 692 -~~~Lasgs~Dg~V~iWD~~~----~~~~~~~~~~h~----------~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
...||+....|...|||+.. ....+.....+. +.-..|.|.++...+| .|+ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 45899999999999999921 011111111111 2234788988877666 444 458999999987
Q ss_pred ceEEEEe--eCCceEEEEEecCC--CEEEEEcCCCcEEEEcCC
Q 003106 757 SCTRVFK--VESFCCWCVNAMNR--PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 757 ~~~~~~~--~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~ 795 (847)
.....+. .....+..+..... ..++.. +...|..++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 6533121 22334444443332 333333 34555555543
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=1.6 Score=48.57 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
..+.|.++.|++|.+.||+--.|++|-+++....+. ..+.+..+..|....|+.+ ..+|.... ..|-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchh
Confidence 457999999999999999999999999998743222 2233344556899999866 45665553 44777777665
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCc
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 757 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~ 757 (847)
...++..+.|...|.-..|+++...++++.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5667777888888988899988765554444 34455555555543
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=93.67 E-value=14 Score=40.96 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
...+.++.+.+++.+++++. .|.+.. ..+..+...... ..-...++++.+.+++. +++.+ ..|.+++=....|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45689999999886665554 554442 222222222222 23456789999999877 44344 467665333444433
Q ss_pred EEEEeeC----CceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 759 TRVFKVE----SFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 759 ~~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
-...... ...+..+.+.....+|.....|.+...
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEe
Confidence 2222211 223455555556667887777766543
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.25 E-value=13 Score=39.38 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=67.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee-EEEccC--CCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWH-TDTLKSK-TNLEEH--SSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP 712 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd-~~~~~~~-~~l~~h--~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~ 712 (847)
.+..-.|++++...+....+..++++. ...+... ..+... ...|+.++++|||.+++... .++.|.|--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 566778889977777766666777774 2333222 122211 12899999999999886655 3567777655421
Q ss_pred --C------ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 713 --G------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 713 --~------~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+ ..+.........|..++|.+++..++++...++.+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 2 1112222335679999999998755544444554444
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.22 E-value=1.8 Score=45.95 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred CEEEEEEcCCCCEEEEEe-CC--CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCCce
Q 003106 640 KVICCHFSSDGKLLATGG-HD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 715 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs-~D--g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD-~~~~~~~ 715 (847)
.+.+.++++|++.+|... .+ ..|+++... .....+. ....++.-.|++++...+....+..++++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 788999999999887765 23 345555443 3222221 223688889999977666666667777774 2221222
Q ss_pred EEEec--cCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECC
Q 003106 716 LRTFM--GHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSIN 754 (847)
Q Consensus 716 ~~~~~--~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~ 754 (847)
..... .-...|.++.++|||.++++... .++.|.|--+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 22221 11228999999999999876663 34666666543
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.95 E-value=3.8 Score=46.07 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecC---CCCEEEEEEcCCCCEEEEEeC--------------------CCcEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRAS---TSKVICCHFSSDGKLLATGGH--------------------DKKAVLWH 666 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h---~~~V~~l~fspdg~~Lasgs~--------------------Dg~V~vwd 666 (847)
.+...+.+-++|-++ +..+...... ...-.++-|.|.-+.++|... -.+|.|||
T Consensus 152 ~G~g~Ggf~llD~~t---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 152 DGNGPGGFVLLDGET---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp TS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred CCCCCCcEEEEcCcc---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 344445555666553 4455544432 334567888888888888653 25799999
Q ss_pred CCCCceeEEEccCC--CCeEEEEEcCC--CCEEEEE-eCCCcEEEEEC-CCCCc---eEEEecc----------------
Q 003106 667 TDTLKSKTNLEEHS--SLITDVRFSPS--MPRLATS-SFDKTVRVWDA-DNPGY---SLRTFMG---------------- 721 (847)
Q Consensus 667 ~~~~~~~~~l~~h~--~~I~~v~fsp~--~~~Lasg-s~Dg~V~iWD~-~~~~~---~~~~~~~---------------- 721 (847)
+.+.+.+.++.--. ..+..|+|..+ ..+-+++ ....+|..|-- +.+.. .+..+..
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccc
Confidence 99999999987433 34678888654 4443333 34555555433 32111 1111110
Q ss_pred -CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 722 -HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 722 -h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
-..-|+.|..+.|.++|.+++-.+|.||.||+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 12457999999999999999999999999999864
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.87 E-value=0.31 Score=37.11 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
...|.+++|+|..++||.++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999983
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.85 E-value=5.6 Score=44.67 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 639 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTDT--LK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs-----------~Dg-~V~vwd~~~--~~--~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....|...-...+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999877753 223 677776432 33 223443334456889999988 44445454
Q ss_pred cEEEEECCCCC----c---eEEEecc----CCCCeEEEEEecCCCeEEEEE
Q 003106 703 TVRVWDADNPG----Y---SLRTFMG----HSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 703 ~V~iWD~~~~~----~---~~~~~~~----h~~~V~sl~fsp~g~~ll~s~ 742 (847)
.+++.|....+ . .+..+.. +...+..++|.|+|..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44454654211 1 1222322 134477899999987444333
No 417
>PHA02713 hypothetical protein; Provisional
Probab=92.74 E-value=0.95 Score=53.83 Aligned_cols=143 Identities=9% Similarity=0.081 Sum_probs=76.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----------------------KAVLWHTDTLK 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------------------~V~vwd~~~~~ 671 (847)
..+.+||..+. .|..+..+.........+.+ +|++.+.||.++ .|..||.++.+
T Consensus 367 ~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 367 RTIECYTMGDD-KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred ceEEEEECCCC-eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 46889998887 66665554433322222332 688888887653 46778877543
Q ss_pred ee--EEEccCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CCc-eEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 672 SK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADN-PGY-SLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 672 ~~--~~l~~h~~~I~~v~fsp~~~~Lasgs~D------g~V~iWD~~~-~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
-. ..+....... +++ .-+++..+.|+.+ ..|..||.++ ... .+..+......+..+.+ +..+++.
T Consensus 444 W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~ 518 (557)
T PHA02713 444 WETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMML 518 (557)
T ss_pred EeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEE
Confidence 32 2121111111 122 2235555666654 2467899886 322 22333322222333333 3458889
Q ss_pred EeCCC--cEEEEECCCCceEEEEeeC
Q 003106 742 CDGDG--EIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 742 ~s~Dg--~V~iWD~~~~~~~~~~~~~ 765 (847)
|+.|+ .|..||+.+.+-......|
T Consensus 519 Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred eeecceeehhhcCcccccccchhhhc
Confidence 99888 7788888877654443333
No 418
>PHA03098 kelch-like protein; Provisional
Probab=92.66 E-value=2.3 Score=50.29 Aligned_cols=136 Identities=11% Similarity=0.055 Sum_probs=65.5
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeE--EEccCCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKT--NLEEHSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~--~l~~h~~~I~~v~f 688 (847)
.+..||..+. .|..+..+........++.+ ++++++.||.+ ..|.+||..+.+-.. .+...... .+++.
T Consensus 312 ~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~ 387 (534)
T PHA03098 312 SVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN 387 (534)
T ss_pred cEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE
Confidence 4567777766 55544433322222222222 67788888865 347778877544321 11111111 12222
Q ss_pred cCCCCEEEEEeCC------CcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEEC
Q 003106 689 SPSMPRLATSSFD------KTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSI 753 (847)
Q Consensus 689 sp~~~~Lasgs~D------g~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~D--------g~V~iWD~ 753 (847)
-+++.++.|+.+ ..|.+||..+...... .+...... .+++.. + +.+++.|+.+ ..+.+||.
T Consensus 388 -~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 388 -VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred -ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE-C-CEEEEECCccCCCCCcccceEEEecC
Confidence 245556666632 3588899876322111 11101111 122222 2 3466666643 23888998
Q ss_pred CCCceE
Q 003106 754 NNGSCT 759 (847)
Q Consensus 754 ~~~~~~ 759 (847)
++++..
T Consensus 464 ~~~~W~ 469 (534)
T PHA03098 464 VTNKWT 469 (534)
T ss_pred CCCcee
Confidence 876543
No 419
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.54 E-value=17 Score=44.58 Aligned_cols=149 Identities=16% Similarity=0.242 Sum_probs=97.4
Q ss_pred CEEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 640 KVICCHFSSD-GKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 640 ~V~~l~fspd-g~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.|.++.|..| +.++++|.. .|.|.||.+..+..+..+..+ .+.|.++..- +|++||.- +-.|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEE
Confidence 4666679888 678887752 477888887764444444332 3455555432 35555443 578999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--CceEEEE-eeCCceEEEEEecCCCEEEEE
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRVF-KVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~~~~~~-~~~~~~v~~~~~~~~~~l~~~ 783 (847)
|+..+ ++.++.-..|...+..+...-.|+.+ +.|+.-+.|.+.-.+. |..+..- ..+..+...+...+...++.+
T Consensus 853 ye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI-~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 853 YEWTT-ERELRIECNISNPIIALDLQVKGDEI-AVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEccc-cceehhhhcccCCeEEEEEEecCcEE-EEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 99988 55666666788889999988887754 5787777777665554 3333333 245667777777777777677
Q ss_pred cCCCcEEEEc
Q 003106 784 LDAGDIQISD 793 (847)
Q Consensus 784 ~~~g~i~i~d 793 (847)
...|.+.+..
T Consensus 931 e~~gNlf~v~ 940 (1096)
T KOG1897|consen 931 ENSGNLFTVR 940 (1096)
T ss_pred cccccEEEEE
Confidence 7777766644
No 420
>PHA03098 kelch-like protein; Provisional
Probab=92.48 E-value=2.8 Score=49.63 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeEE--EccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCce
Q 003106 649 DGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYS 715 (847)
Q Consensus 649 dg~~Lasgs~Dg------~V~vwd~~~~~~~~~--l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~ 715 (847)
++.+++.||.++ .+..||..+.+.... +.........+.+ +++.++.||.+ ..+.+||..+...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W- 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW- 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce-
Confidence 566777776543 577788776544221 1111112222222 46666777765 3477888876322
Q ss_pred EEEecc--CCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCce
Q 003106 716 LRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 758 (847)
Q Consensus 716 ~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D------g~V~iWD~~~~~~ 758 (847)
..... +...-.+++.. ++.+++.|+.+ ..|.+||+.+++.
T Consensus 371 -~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 -REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred -eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 11111 11111122222 34566677632 4588999887653
No 421
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=17 Score=38.72 Aligned_cols=142 Identities=14% Similarity=0.058 Sum_probs=91.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fs 689 (847)
.+..+++.|+.+......+..+.. .+.-.++.+ .|++...+..|.-+.+.|+.+. .+...+.........++++
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS 180 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS 180 (370)
T ss_pred CCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe
Confidence 456789999998755555554432 144455555 5889988886767778888743 3344444445555677777
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
|++-+.++.|+-+.|-|+.++..++..-.-..+ .++++..+++.. ++ +.. +--|.+-|..+.+....+
T Consensus 181 --Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~-vvy-~egvlivd~s~~ssp~~~ 249 (370)
T COG5276 181 --GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL-VVY-DEGVLIVDVSGPSSPTVF 249 (370)
T ss_pred --cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE-EEc-ccceEEEecCCCCCceEe
Confidence 778888889999999999986554433222233 788888887733 33 333 445667787766544443
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=92.42 E-value=3.4 Score=48.26 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceeE--EEccCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCCce-EEE
Q 003106 649 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS-LRT 718 (847)
Q Consensus 649 dg~~Lasgs~Dg-----~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~~~~Lasgs~D--g~V~iWD~~~~~~~-~~~ 718 (847)
++.++++||.++ ++..||..+.+... .+.........+. -++...+.|+.+ .++..||..+.... +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776543 46678877644322 1111111112222 246566777653 45888887652211 111
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCce
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSC 758 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~~~ 758 (847)
+....... +++.. + +.+.+.|+.++ .+.+||.++..-
T Consensus 349 l~~~r~~~-~~~~~-~-g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVASI-N-NVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEEE-C-CEEEEecCcCCCCccEEEEeCCCCEE
Confidence 11111111 22222 2 45777777553 477888887653
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.42 E-value=3.9 Score=41.94 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=71.1
Q ss_pred cCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEE--CCCC-----ceeEEEcc----CCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 636 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWH--TDTL-----KSKTNLEE----HSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Las-gs~Dg~V~vwd--~~~~-----~~~~~l~~----h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
..-+.-+.++|+.|-+.+.. -+.+-+|.-|| ..+| +.+..++. ..-.--.+++..+|++.+++-..++
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 33444567899988776654 45677888888 4444 33333332 1111223445667888888888899
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCC-CeEEEEEeC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDG 744 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~ 744 (847)
|...|..+ ++.+.+++--...|+|+||--.. ..+.+|+..
T Consensus 235 V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 235 VQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99999999 88888888888999999997432 223444443
No 424
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.14 E-value=8.6 Score=43.57 Aligned_cols=145 Identities=10% Similarity=0.095 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcE-EEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----
Q 003106 641 VICCHFSSDGKLLATGGHDKKA-VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----- 714 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V-~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~----- 714 (847)
...+..++|+.+++.+. .|.| +-||-....-...-......++++.|.+++..++++ .+|.|.+ .... +.
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCccccc
Confidence 44456667777776664 3443 334432110011112234568999999998877655 4565443 3332 22
Q ss_pred eEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe---eCCceEEEEEecCCCEEEEEcCCCcE
Q 003106 715 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---VESFCCWCVNAMNRPCLWDKLDAGDI 789 (847)
Q Consensus 715 ~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~~g~i 789 (847)
.+..... -...++++.|.+++. ++ .++.+|.|.+.. ..|+.-.... .-....+.+.+.+....|....+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1222221 123488999998865 55 455577776653 4444323322 12334667777777888888888887
Q ss_pred EEE
Q 003106 790 QIS 792 (847)
Q Consensus 790 ~i~ 792 (847)
..|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.00 E-value=2.8 Score=50.21 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=73.2
Q ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeEEEccCCCCeEEEEEc--CCCCEEE
Q 003106 641 VICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLA 696 (847)
Q Consensus 641 V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~-------~-------------~~~~~l~~h~~~I~~v~fs--p~~~~La 696 (847)
|+-|.+.. +...|+.|.+||.|.+|.+++ . ++...+. -...+++|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444333 567899999999999997531 0 0111222 23468999998 7777888
Q ss_pred EEeCCCcEEEEECCCC--CceEEEeccCCCCeEEEEEecCC-----CeEEEEEeCCCcEEEEEC
Q 003106 697 TSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~--~~~~~~~~~h~~~V~sl~fsp~g-----~~ll~s~s~Dg~V~iWD~ 753 (847)
+++....|.||-.... ......-..|...|-+|+|-++. ...|++++-.|.|.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8887778888765431 11111112356678899997754 136778888999999888
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.89 E-value=2.5 Score=50.38 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCce
Q 003106 649 DGKLLATGGHDK------KAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYS 715 (847)
Q Consensus 649 dg~~Lasgs~Dg------~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~D------g~V~iWD~~~~~~~ 715 (847)
.+.+++.||.++ .|..||..+........ .+...-.++++.. +...++|+.| .++.+||.++...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W- 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQW- 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCce-
Confidence 456677777763 67788888664332221 1222234455543 4567888888 3577888887332
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCc
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGS 757 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-----~V~iWD~~~~~ 757 (847)
..+..-...-..+....-+..+.+.|+.|| +|..||.++.+
T Consensus 362 -~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 362 -TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred -eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 111111111111111222345778888886 47788887765
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.85 E-value=11 Score=46.12 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=98.1
Q ss_pred eeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 604 FLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 604 ~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
++.++......|.+.++.......++.+.... -.+.|.++..- +|++||.- .-.|++|++.+.+.++.-..|...+
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPI 871 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCe
Confidence 34455567788888888887743555544333 34556665543 57777654 4689999999887777777888899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+...-.++.++.|..-+.|.+.-.+.....+..+ ..+..+.+++.+-.+.. ++ .+..+|.+.+....
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YL-GAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EE-eecccccEEEEEec
Confidence 999999999999999988877776555422222222 34667777888775533 33 55667777776543
No 428
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.79 E-value=11 Score=39.92 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=82.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
..++.+|+.++.... ...+.. .----.|++. ++++..-.=.++.+.+||.++.+.+.++.-. +.=+.++ .+++.
T Consensus 68 S~l~~~d~~tg~~~~-~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~ 141 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQ-SVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKR 141 (264)
T ss_dssp EEEEEEETTTSSEEE-EEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSC
T ss_pred EEEEEEECCCCcEEE-EEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCE
Confidence 467888888873222 222221 1111233333 3334444456889999999999999888633 3445666 45778
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|+.+.....|+++|..+ ...++.+... -..++.|.|. +| .++|=.=....|...|..+|+++..+.
T Consensus 142 Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp EEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred EEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 88888788899999887 4555544322 1346667776 33 466555556678888888888887765
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.75 E-value=1.6 Score=51.79 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCceeEEE--ccCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNL--EEHS 680 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l--~~h~ 680 (847)
...+.|||...+ .++....+ ...+.|.+++|.. ||..+++.|..+.|.+|.-. +...++.+ ..|+
T Consensus 50 ~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 50 RSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred CCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence 457899999987 44444444 5678899999975 88999999999999998531 12333333 3444
Q ss_pred -CCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 681 -SLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 681 -~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 128 ~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 128 PHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 679999999999655444 3567777643
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.56 E-value=19 Score=44.30 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCc
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-------------DVRFSP--SMPRLATSSF----------DKT 703 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~-------------~v~fsp--~~~~Lasgs~----------Dg~ 703 (847)
++++|+.++.|+.|.-.|.++|+.+..|.. .+.|. .+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345888899999999999999999877632 22110 011112 1345666642 688
Q ss_pred EEEEECCCCCceEEEecc-C----------------CCCe-EEEEEecCCCeEEEEE-----------------eCCCcE
Q 003106 704 VRVWDADNPGYSLRTFMG-H----------------SASV-MSLDFHPNKDDLICSC-----------------DGDGEI 748 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~-h----------------~~~V-~sl~fsp~g~~ll~s~-----------------s~Dg~V 748 (847)
|+-+|+++ ++.+-.+.. . ...+ ..+++++....+++-. ...+.|
T Consensus 338 I~A~Da~T-Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNT-GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCC-CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 99999999 555544421 0 0111 2234444433222100 123567
Q ss_pred EEEECCCCceEEEEeeCCceEEE-----------EEe-cC--CCEEEEEcCCCcEEEEcCCc
Q 003106 749 RYWSINNGSCTRVFKVESFCCWC-----------VNA-MN--RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 749 ~iWD~~~~~~~~~~~~~~~~v~~-----------~~~-~~--~~~l~~~~~~g~i~i~d~~~ 796 (847)
.-.|+++|+.+-.+.....-++. +.. .. ...++.+..+|.+.++|...
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~t 478 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRT 478 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCC
Confidence 77888888877766542222221 211 11 13677888888888888653
No 431
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.53 E-value=29 Score=39.48 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEeccCCceeeE--eEEeecCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECC--CCc-------eeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFSS----DGKLLATGGHDKKAVLWHTD--TLK-------SKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~--~~~l~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~vwd~~--~~~-------~~~ 674 (847)
.++..|.+||++...+ .++. +..-..-..+|..|.+-. .....++.=.-+++.||.+. .+. .+.
T Consensus 42 vGS~~G~LrIy~P~~~-~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~ 120 (418)
T PF14727_consen 42 VGSYSGILRIYDPSGN-EFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLE 120 (418)
T ss_pred EeccccEEEEEccCCC-CCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEE
Confidence 3566788888887554 2221 211223456777776542 23333333567788888873 111 222
Q ss_pred EEccCCC--CeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 675 NLEEHSS--LITDVRFSP----S-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 675 ~l~~h~~--~I~~v~fsp----~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
.+..|.- ....+++-| . ..+|++=+.||.+.+|+-+. .....+....--.-.++|.+..+.+ ++++.+..
T Consensus 121 ~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~llPgPl~Y~~~tDsf-vt~sss~~ 197 (418)
T PF14727_consen 121 LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--FAFSRFLPDFLLPGPLCYCPRTDSF-VTASSSWT 197 (418)
T ss_pred EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--EEEEEEcCCCCCCcCeEEeecCCEE-EEecCcee
Confidence 2333432 122233222 2 35778889999999999876 2223332222233347788776644 47777788
Q ss_pred EEEEEC
Q 003106 748 IRYWSI 753 (847)
Q Consensus 748 V~iWD~ 753 (847)
|..|..
T Consensus 198 l~~Yky 203 (418)
T PF14727_consen 198 LECYKY 203 (418)
T ss_pred EEEecH
Confidence 888865
No 432
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.18 E-value=23 Score=37.50 Aligned_cols=178 Identities=11% Similarity=-0.025 Sum_probs=98.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPR 694 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~ 694 (847)
.|...|-++....+.....+.-........|.++|++-+|+.. |.---.|. ....+++|... ...-+.|+..|+|..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP-a~~~i~vfpaPqG~gpyGi~atpdGsv 202 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP-ARNVISVFPAPQGGGPYGICATPDGSV 202 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc-ccCceeeeccCCCCCCcceEECCCCcE
Confidence 4555555544111111122333456778889999999888752 11111111 11223333322 233567888999998
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE-EEEeeCCceEEEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~-~~~~~~~~~v~~~ 772 (847)
-++.-.+..|-..|..+....+... ..-......+--+|.|. +.+|....+.+..||..+..-+ ..+.+....-.++
T Consensus 203 wyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~ 281 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSM 281 (353)
T ss_pred EEEeccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccceeeeCCCCCCCccee
Confidence 8887778888877776622111111 12122334455566665 5557666788888887765422 2223334445667
Q ss_pred EecCCCEEEE-EcCCCcEEEEcCCc
Q 003106 773 NAMNRPCLWD-KLDAGDIQISDSLF 796 (847)
Q Consensus 773 ~~~~~~~l~~-~~~~g~i~i~d~~~ 796 (847)
..+...++|. -...+.|.-+|...
T Consensus 282 rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 282 RVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeccCCcEEeeccccCceeecCccc
Confidence 7778888887 55666677777543
No 433
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.94 E-value=8.3 Score=42.99 Aligned_cols=87 Identities=15% Similarity=0.009 Sum_probs=48.5
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc
Q 003106 645 HFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 645 ~fspdg~~Lasgs~-Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~ 721 (847)
+|..||+.|+.++. || .+.+.|+.+++....-.+-........++++.+.|+-...+..|+-.|+++ .+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC
Confidence 56779976665554 55 566778888877654443223334566788888887666677899999998 444455555
Q ss_pred CCCCeEEEEEe
Q 003106 722 HSASVMSLDFH 732 (847)
Q Consensus 722 h~~~V~sl~fs 732 (847)
....+-...|.
T Consensus 121 p~~~~g~gt~v 131 (386)
T PF14583_consen 121 PDDWKGYGTWV 131 (386)
T ss_dssp -TTEEEEEEEE
T ss_pred Cccccccccee
Confidence 55556556664
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.71 E-value=17 Score=40.81 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=66.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~ 725 (847)
|+ .++.+..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++++|.++ +..+..+.... -.
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCeE
Confidence 44 4555578888988998888866443222 12233333333564 88888899999999976 66665555444 11
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+..-.+-.++ .+..++.|+.+...|..+|..+-.+..
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 2222222233 233444678888888888876555443
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.62 E-value=17 Score=44.50 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C--------C-c--eEEEe--------ccCCCCeEEEEEecCC---Ce
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADN-P--------G-Y--SLRTF--------MGHSASVMSLDFHPNK---DD 737 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~-~--------~-~--~~~~~--------~~h~~~V~sl~fsp~g---~~ 737 (847)
-.|..|.++++|++|+..|..|. .|-.+.. . + . ..+++ ..+...|..+.|||.+ .+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35888999999999988887654 4433321 0 1 1 11121 1345678999999974 44
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 003106 738 LICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 738 ll~s~s~Dg~V~iWD~~~~ 756 (847)
++ .=..|++||+||+...
T Consensus 164 l~-vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LV-VLTSDNTLRLYDISDP 181 (717)
T ss_pred EE-EEecCCEEEEEecCCC
Confidence 55 5556999999999754
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.47 E-value=1.3 Score=45.83 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=45.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEE-------c-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-------E-------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-------~-------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..++||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447889999999999999999987765432 1 2345577777777776555544 56677777653
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.26 E-value=0.96 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCC
Q 003106 724 ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~ 755 (847)
+.|.++.|+|... .+|+.+..-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998655 6887888889999999995
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.01 E-value=1.1 Score=33.26 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=26.5
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 003106 639 SKVICCHFSSD-G--KLLATGGHDKKAVLWHTDT 669 (847)
Q Consensus 639 ~~V~~l~fspd-g--~~Lasgs~Dg~V~vwd~~~ 669 (847)
+.|++|+|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899988889999999985
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=7.1 Score=44.44 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CCce---EEEe-------c-cCCCCeEEEEEecCC--CeEEE
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYS---LRTF-------M-GHSASVMSLDFHPNK--DDLIC 740 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~--------~~~~---~~~~-------~-~h~~~V~sl~fsp~g--~~ll~ 740 (847)
.|..|..++.|..++-.+.+|.+.++=.+. .++. .+++ . ...-.+..++|||+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999998888898766543221 0211 1111 1 112246678899986 33444
Q ss_pred EEeCCCcEEEEECCCCceE
Q 003106 741 SCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~ 759 (847)
.-+.|.+|||||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 5566999999999876544
No 440
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.72 E-value=56 Score=40.69 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=90.0
Q ss_pred CCCcEEEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCC--EEEEEeC-----------CCcEEEEECC-CCceeEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGK--LLATGGH-----------DKKAVLWHTD-TLKSKTNLE 677 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~--~Lasgs~-----------Dg~V~vwd~~-~~~~~~~l~ 677 (847)
.-..|++.|..++...-.+..- ..-.-.|.++.|+.... ++++|+. +|.++.|++- .++.+.-+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 4446888888877322221111 12233567777876433 3444432 3446666643 344333221
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 678 --EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 678 --~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
.-.+.| .+++|-..++++|- ...+++||+-. +..++..+ .....|+.+.|.. .++++.-..| .|.++-.
T Consensus 931 ~T~~~~~v--~Ai~~f~~~~Lagv-G~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~--~RI~VgD~qe-SV~~~~y 1003 (1205)
T KOG1898|consen 931 KTEIPGPV--GAICPFQGRVLAGV-GRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYG--ARIVVGDIQE-SVHFVRY 1003 (1205)
T ss_pred ccCCCccc--eEEeccCCEEEEec-ccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecc--eEEEEeeccc-eEEEEEE
Confidence 112333 34566666665554 57899999986 44444332 2345677777763 3555433344 4544433
Q ss_pred CC-CceEEEEeeC--CceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 754 NN-GSCTRVFKVE--SFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 754 ~~-~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
+. ++.+..|... ...|.++...+...+..+..-|.+.+..
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEE
Confidence 32 3344455433 3456666655655665555566655543
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=8.2 Score=39.03 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCC
Q 003106 649 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSAS 725 (847)
Q Consensus 649 dg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~ 725 (847)
+|.+|.+.+. ...|++||+++++.+..-+-....+..=-...-+++++.-. .||.-.++|.++ .+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 5666666654 34799999999888765443222222222222355554443 488889999988 55555553 2344
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
-+.++ .|+++++ .++...++++-|.++.....++
T Consensus 133 GWgLt--~d~~~Li-msdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 133 GWGLT--SDDKNLI-MSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred ceeee--cCCcceE-eeCCceEEEecCHHHhhhcceE
Confidence 45555 4456666 4444567888888776544433
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.57 E-value=30 Score=39.82 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEc-----cCCCCeEEEEEcCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 692 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~-----~h~~~I~~v~fsp~~ 692 (847)
.-...+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 445678999999998877765469999998654432 21111 124668999999885
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.45 E-value=3.9 Score=46.37 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=64.2
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC----eEEEEEcCC-----------
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPS----------- 691 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----I~~v~fsp~----------- 691 (847)
.......+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.+++..+. |....-...
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 44556667777888999999999999888877799999999999999988876543 111111110
Q ss_pred ---CCEE-EEEeCCCcEEEEECCCCCceEEEec
Q 003106 692 ---MPRL-ATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 692 ---~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
..+| +-+-.-|.|-||++++ +..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCC-CCEEEEEE
Confidence 1122 3344578888888887 55555443
No 444
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.11 E-value=46 Score=37.93 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=99.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----------------
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----------------- 713 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~----------------- 713 (847)
.+|++=+.||.+.+|+-+.....+.+.. ---.-.+.|.+..+.|++++.+..|..|....-.
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 5778889999999999876555555543 2233567888888899999999999998763210
Q ss_pred --ce-E--EEeccCCCCeEEEE---EecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE--e--cCC----
Q 003106 714 --YS-L--RTFMGHSASVMSLD---FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN--A--MNR---- 777 (847)
Q Consensus 714 --~~-~--~~~~~h~~~V~sl~---fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~--~--~~~---- 777 (847)
+. . .++. -...|..|. ++.....+++-| +.++.+.+-. |......+-......... . ...
T Consensus 225 ~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~ 300 (418)
T PF14727_consen 225 SGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTR 300 (418)
T ss_pred ccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence 00 0 0110 112233333 332333455444 4566666653 543333333222211111 1 111
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+..++.++.+.+|.... .++.... ........+.....-.++|++=+.||.|.+--+||
T Consensus 301 ~~llV~t~t~~LlVy~d~~---L~WsA~l-----~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYEDTT---LVWSAQL-----PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEecCCeEEEEeCCe---EEEecCC-----CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2377788888888876321 1111111 11111111121222367899999999999988886
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.99 E-value=6.2 Score=44.33 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C----ce--e-EEEcc----CCCCeEEEEEcCCCCEEEEEeCC----
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-L----KS--K-TNLEE----HSSLITDVRFSPSMPRLATSSFD---- 701 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~----~~--~-~~l~~----h~~~I~~v~fsp~~~~Lasgs~D---- 701 (847)
....+.|+|.+++ +++ ++.+..+++.|.+. + +. + ..+.. +...+..++|.|||.+.++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456788998888 444 44444334445532 1 21 1 12222 13447789999999866554421
Q ss_pred ---------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 702 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 702 ---------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
|.|.-+|.+. ..+..+...-.....++|+++|. ++++
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDG--GKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred eccCCCccCcccccCceEEEEecCC--CeEEEEecCcCCCccceECCCCC-EEEE
Confidence 3344455543 23334432234467899999987 4434
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.96 E-value=37 Score=38.02 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC---CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SA 724 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h---~~ 724 (847)
+|+ |+.++.++.++.+|.++++.+..+.... ..+..-.+-.++ .++.++.|+.+...|..+ +..+-.+..- ..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~t-G~~~W~~~~~~~~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADT-GTLKWTYETPAPLSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccC-CcEEEEEecCCcccc
Confidence 665 7777889999999998899888877655 112222222233 344444678888888777 4443332211 11
Q ss_pred CeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEE
Q 003106 725 SVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRV 761 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~ 761 (847)
.+..--...++ .++.+.. ++.+.-.|+++|..+-.
T Consensus 188 ~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 188 SIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ccccCceeecc--eEEEecCCCcceEEEEEccCCcEeee
Confidence 11110011122 2334444 55677777777765554
No 447
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.81 E-value=38 Score=36.59 Aligned_cols=165 Identities=12% Similarity=0.108 Sum_probs=85.3
Q ss_pred cEEEEeccCCceeeEeEEee----cCCCCEEEEEEcCCC-----CEEEEE-eCCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVR----ASTSKVICCHFSSDG-----KLLATG-GHDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~----~h~~~V~~l~fspdg-----~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
++-+||+.++...+. ..+. ...+.+.++++.... .+++.+ +..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~-~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRR-YPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEE-EE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEE-EECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 455677777732221 1121 134567888887622 233333 33468999999988776665432
Q ss_pred -------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----CC--------ceEEEeccCC-CCeEEE
Q 003106 680 -------------SSLITDVRFSP---SMPRLATSSFDKTVRVWDADN-----PG--------YSLRTFMGHS-ASVMSL 729 (847)
Q Consensus 680 -------------~~~I~~v~fsp---~~~~Lasgs~Dg~V~iWD~~~-----~~--------~~~~~~~~h~-~~V~sl 729 (847)
.+.|..++.+| +++.|+-+...+. ++|.+.+ .. ..+..+ |.. .....+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence 12355666655 5566665554332 3333322 00 012222 222 355678
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC---ceEEEEeeC-C--ceEEEEEecC--CCEEEEEc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKVE-S--FCCWCVNAMN--RPCLWDKL 784 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~-~--~~v~~~~~~~--~~~l~~~~ 784 (847)
+++++|. ++++--..+.|..||..+. +....+... . .++..+.+.. ...+|..+
T Consensus 192 ~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8888765 6667777889999999862 122223222 2 3456666666 55665544
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.41 E-value=52 Score=39.46 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
.+.|..|.|..+++.+++...+|.|.+||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 567999999999999999999999999999
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.40 E-value=6.7 Score=40.02 Aligned_cols=102 Identities=14% Similarity=0.255 Sum_probs=64.1
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC---C---cEEEE---ECC-CCCceEE-
Q 003106 651 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW---DAD-NPGYSLR- 717 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D---g---~V~iW---D~~-~~~~~~~- 717 (847)
+.|+.+...++|.+|++. ..+...+|.. -+.|..+.++..|++|+|--.+ . .+|+| +.. .....++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444566789999988 3455556643 3789999999999999997532 2 56664 322 1111111
Q ss_pred EeccC---------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 718 TFMGH---------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 718 ~~~~h---------------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.|| ...+.+|+..|-..++++.+ ++++.+|.++.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence 22222 33567788888766677444 56888887654
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.14 E-value=8.6 Score=40.35 Aligned_cols=142 Identities=17% Similarity=0.253 Sum_probs=76.5
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCC--Ccee-EEE---ccCCCCeEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-D--KKAVLWHTDT--LKSK-TNL---EEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-D--g~V~vwd~~~--~~~~-~~l---~~h~~~I~~v~ 687 (847)
..+||+.++ +++.+... ...-+.+-.|-+||++|.+|+. | ..|++++..+ ..+. .+. -....+=-++.
T Consensus 48 s~~yD~~tn-~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTN-TFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCC-cEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 458999887 55554321 1222233457789999999975 3 4588888643 1111 111 01122223344
Q ss_pred EcCCCCEEEEEeCCC-cEEEEECCCCCc-eEE-EeccC------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSMPRLATSSFDK-TVRVWDADNPGY-SLR-TFMGH------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg-~V~iWD~~~~~~-~~~-~~~~h------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.-+||+.|+.|+.+. +.-+|.-+.... ... .+... ...--.+...|+|+ +|+.+.. .-.|||..+.+.
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~--~s~i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANR--GSIIYDYKTNTV 201 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcC--CcEEEeCCCCeE
Confidence 567999998887654 455665432111 111 11110 11112455678887 5556653 355779988877
Q ss_pred EEEEee
Q 003106 759 TRVFKV 764 (847)
Q Consensus 759 ~~~~~~ 764 (847)
++.+..
T Consensus 202 ~~~lP~ 207 (243)
T PF07250_consen 202 VRTLPD 207 (243)
T ss_pred EeeCCC
Confidence 676654
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.83 E-value=2.9 Score=43.26 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=48.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEE------ec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRT------FM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~------~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+..++++|++.+.+|.+++||+.+....+.. +. .....|..+.++.+|.- +++-+ +|...+||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEeccc
Confidence 4456889999999999999999983222111 11 24566888888877663 43444 5788888877
Q ss_pred CCceEEE
Q 003106 755 NGSCTRV 761 (847)
Q Consensus 755 ~~~~~~~ 761 (847)
-+.-++.
T Consensus 96 L~~W~~v 102 (219)
T PF07569_consen 96 LGCWIRV 102 (219)
T ss_pred cceeEEe
Confidence 6554443
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=7.8 Score=44.12 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=30.5
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.|..|..++.|..++++| .+|.+.++=.+....-..|+.....|.|-.+.-...+
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ 159 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF 159 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeEEEEchhhcCccceecCCCceEEEEeeccccee
Confidence 367777888888655444 4776655544433334455555555555544333333
No 453
>PLN02153 epithiospecifier protein
Probab=87.21 E-value=52 Score=36.32 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 003106 649 DGKLLATGGHD-----KKAVLWHTDTLK 671 (847)
Q Consensus 649 dg~~Lasgs~D-----g~V~vwd~~~~~ 671 (847)
++++++.|+.+ ..|.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56777787754 357788887643
No 454
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.13 E-value=46 Score=35.61 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=92.5
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 651 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~ 651 (847)
+|.|+.+.+....+..+- .++...+|.-... .+..+...-+.|+.+.........+......-..++.| |+
T Consensus 109 ~IvDIS~P~sP~~~~~ln----t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn 182 (370)
T COG5276 109 RIVDISTPDSPTLIGFLN----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN 182 (370)
T ss_pred EEEeccCCCCcceecccc----CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC
Confidence 889998876654433322 2222333322222 22234455667777654445555555555555667775 67
Q ss_pred EEEEEeCCCcEEEEECCCCce---eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 652 LLATGGHDKKAVLWHTDTLKS---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 652 ~Lasgs~Dg~V~vwd~~~~~~---~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
+-..+..|+-++|-|+..... +... .....+.++..+++..++ .-.|.-|.+-|..++..+...-.-....+.+
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~--vvy~egvlivd~s~~ssp~~~gsyet~~p~~ 259 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYL--VVYDEGVLIVDVSGPSSPTVFGSYETSNPVS 259 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEE--EEcccceEEEecCCCCCceEeeccccCCccc
Confidence 888888999999999875432 2222 122367787777654444 3445668888888744222111111222323
Q ss_pred E---EEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 729 L---DFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 729 l---~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+ ..+ ++ +......+.-+-+-|+.+.
T Consensus 260 ~s~v~Vs--~~-~~Yvadga~gl~~idisnp 287 (370)
T COG5276 260 ISTVPVS--GE-YAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ccceecc--cc-eeeeeccccCceeEeccCC
Confidence 3 333 33 3335555666677777653
No 455
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.08 E-value=18 Score=41.94 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=97.8
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEc-cCCCCeEEEEEcCCCCEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLE-EHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~-~h~~~I~~v~fsp~~~~La 696 (847)
+-+-.++..+..+..++ ...|+.+++..+| .+-.|+..+-+..|+.++ +....... ...+.|..|.=.|+++ |.
T Consensus 358 van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LW 433 (671)
T COG3292 358 VANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LW 433 (671)
T ss_pred EecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EE
Confidence 33344443334433333 3556777777644 555566554466677665 32222222 2346788888888887 88
Q ss_pred EEeCCCcEEEEECCCCCceEEEe--cc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTF--MG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~--~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+|.++. +.+. +.....+ .. ..+.|..+.+.++|+-.+++| + .|..|+-+.......+......-+.
T Consensus 434 IGTs~Glvk~-~pe~-~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g--~-gva~~~sq~~~~~~~l~~~~q~qy~ 508 (671)
T COG3292 434 IGTSGGLVKR-DPES-GRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG--S-GVAAWESQRRMFVPILDLTGQRQYS 508 (671)
T ss_pred EeccCCeEec-Cccc-cchhcccccccCcCCcchhhhhccCCCCceEEEec--c-eeeeeccccceecccccccceeeEE
Confidence 8888887664 2221 2222221 11 234577888999998666555 3 4789988766555555555555555
Q ss_pred EEecCCCEEEEEcCCCcEEEEc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d 793 (847)
....+...+|.....+.++.-.
T Consensus 509 f~~~~~d~vw~~~~Rg~vr~r~ 530 (671)
T COG3292 509 FVPVGGDEVWVHRLRGLVRWRH 530 (671)
T ss_pred EEEccCceEeeeeeceeeeecc
Confidence 5667788888887777666443
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.01 E-value=3.1 Score=41.32 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCeEEEEEecC-----CCeEEEEEeCCCcEEEEECCC
Q 003106 724 ASVMSLDFHPN-----KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~-----g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
..|.+++|+|. ++++|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47999999984 467999999999999997664
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=86.53 E-value=23 Score=41.30 Aligned_cols=134 Identities=7% Similarity=0.014 Sum_probs=63.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeE--EEccCCCCeEEEEEcCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS 691 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~ 691 (847)
.+..||..++ .|..+..+.........+. -++++.+.||.+ ..|..||..+.+-.. .+.........+.+ +
T Consensus 288 ~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~ 362 (480)
T PHA02790 288 NAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--N 362 (480)
T ss_pred eEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--C
Confidence 3455666655 4555444432222222222 367788888764 357788876543221 12111111122222 4
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 692 MPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 692 ~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++..+.|+.++ .+.+||.++..............-.+++. -+ ..+++.| |.+.+||.++++-.
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~-~~-~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV-FG-RRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE-EC-CEEEEEC---CceEEecCCCCcEe
Confidence 66667777543 47788887632211100011111112221 12 3466565 45788998876543
No 458
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=86.46 E-value=61 Score=36.91 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=78.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEE--------------EccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTN--------------LEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~--------------l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.|..|+.. .++++.-..||.|..|... .++.... +......|..+++ ...+++....+|+|
T Consensus 177 ~vv~l~cg--~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~--G~dh~i~lt~~G~v 252 (476)
T COG5184 177 RVVKLACG--WEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAA--GADHLIALTNEGKV 252 (476)
T ss_pred heEEeecC--CceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeecc--CCceEEEEecCCcE
Confidence 56666553 4566666778888888752 1111100 1111234544444 44578888889988
Q ss_pred EEEECCCCCce---------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----ce------EEEEe--
Q 003106 705 RVWDADNPGYS---------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SC------TRVFK-- 763 (847)
Q Consensus 705 ~iWD~~~~~~~---------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----~~------~~~~~-- 763 (847)
+-|--...+.. +..+.+..-.+..+...-.|.+..+.-..||.|..|-+.-. .+ ..+++
T Consensus 253 y~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~ 332 (476)
T COG5184 253 YGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332 (476)
T ss_pred EEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccc
Confidence 87754432111 11111222222333333445566667788999988866421 11 12222
Q ss_pred --eCCce-EEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 764 --VESFC-CWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 764 --~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
..... +.|.........|..+.+|.+.-|-.
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 12222 22444456667778888887776653
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.19 E-value=22 Score=33.54 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--------ceeEEEccCCCCeEEEE---EcCC--CCEEEEEeCCCcEEEEEC
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSSLITDVR---FSPS--MPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~--------~~~~~l~~h~~~I~~v~---fsp~--~~~Lasgs~Dg~V~iWD~ 709 (847)
.-+|......|++++.-|+|.|++.... ..+..| .-...|++|+ |.++ ...|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3455555567888888899999986532 223333 2345677775 4332 34566665 678999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCc
Q 003106 710 DNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
...... .++.-.+.|.+|.+-.- ...+++. +.+..|.-||....+
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcE
Confidence 873332 22334567777777322 1224433 335666666665444
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.84 E-value=24 Score=39.68 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC--C-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---EE
Q 003106 644 CHFSSDGKLLATGGHDKKAVLWHTDT--L-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS---LR 717 (847)
Q Consensus 644 l~fspdg~~Lasgs~Dg~V~vwd~~~--~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~---~~ 717 (847)
+-|. |.+.++.|-..|-+.=|-+.. . -++..-....++|.+|.|++|.+.||.--.|++|.+++....... ..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 4444 444444444455566665542 1 222222345679999999999999999999999999988431111 12
Q ss_pred EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceE
Q 003106 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCC 769 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v 769 (847)
+.+.....|...+|....+ ++..+ |.-|.+|-+... +.++..+.+...|
T Consensus 107 ~ck~k~~~IlGF~W~~s~e--~A~i~-~~G~e~y~v~pekrslRlVks~~~nv 156 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE--IAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNV 156 (657)
T ss_pred HhccCcceeEEEEEecCee--EEEEe-cCCeEEEEEchhhhhhhhhhhcccCc
Confidence 2233344588889987633 33333 334666655432 2333444444333
No 461
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.49 E-value=49 Score=35.47 Aligned_cols=116 Identities=10% Similarity=0.081 Sum_probs=71.2
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+-...|.++.|+|+.+.|++......-.||=..+ +..++++.- .-.....|.|..++. ++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence 34455699999999999999888777766665544 777776532 123345677777655 444666788888887776
Q ss_pred CceEEEEee---------C-CceEEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 756 GSCTRVFKV---------E-SFCCWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 756 ~~~~~~~~~---------~-~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
...+..++. + ....-.++++ ....+|...+..-+.+|..
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 533322221 1 1112233333 3456777777766666653
No 462
>PLN02193 nitrile-specifier protein
Probab=85.30 E-value=81 Score=36.70 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=65.5
Q ss_pred CcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEcc----CCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEE----HSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~----h~~~I 683 (847)
..+.+||+.+. .|..+.... .......+.+..-++++++.|+.+ ..|.+||+.+.+-...-.. ....-
T Consensus 193 ~~v~~yD~~~~-~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 193 KHLYVFDLETR-TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred CcEEEEECCCC-EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 45677888776 555432110 010111111222356777777765 3578888876543221110 01111
Q ss_pred EEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCC----CcE
Q 003106 684 TDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGD----GEI 748 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~D----g~V 748 (847)
.++.. -+++.++.|+.++ .+.+||+.+... ..+.. ..... +++.. +++ +++.++.+ ..|
T Consensus 272 h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~~~R~~~-~~~~~-~gk-iyviGG~~g~~~~dv 345 (470)
T PLN02193 272 HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW--FHCSTPGDSFSIRGGA-GLEVV-QGK-VWVVYGFNGCEVDDV 345 (470)
T ss_pred eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE--EeCCCCCCCCCCCCCc-EEEEE-CCc-EEEEECCCCCccCce
Confidence 12222 2355556666543 467788876321 11110 11111 12222 344 55566654 468
Q ss_pred EEEECCCCceEE
Q 003106 749 RYWSINNGSCTR 760 (847)
Q Consensus 749 ~iWD~~~~~~~~ 760 (847)
.+||+.+.+...
T Consensus 346 ~~yD~~t~~W~~ 357 (470)
T PLN02193 346 HYYDPVQDKWTQ 357 (470)
T ss_pred EEEECCCCEEEE
Confidence 999999876543
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.14 E-value=56 Score=34.69 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=106.3
Q ss_pred cceEEEecCCCeEeecCCCeE--EeCCCCchhh------ccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEec
Q 003106 556 KPLMMFGTDGAGTLTSPSNQL--WDDKDLELRA------DMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDV 622 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~~i--WD~~~~~~~~------~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~ 622 (847)
-..|...|||..-+++....| .|-++.++.. .-...++...+|+.-.+|+..-. .+...+.+++|+.
T Consensus 106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA 185 (353)
T ss_pred CceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc
Confidence 345677888776555554433 2333333211 11122334445555555544321 1222233334433
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCCCEEEEEe
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~~~Lasgs 699 (847)
-- ...-+.|+..|||..-++.-.+..|...|..++.. ..+. .....-..|--+|.+..-+|..
T Consensus 186 Pq-------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittw 251 (353)
T COG4257 186 PQ-------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTW 251 (353)
T ss_pred CC-------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEecc
Confidence 22 23456788899999888877777787777765522 2222 1112223444466677667766
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
..+.+..||-.+....-..+.+....-.++..+..+...+ +--..|.|.-+|.++.. ..+|...
T Consensus 252 g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~-sea~agai~rfdpeta~-ftv~p~p 315 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL-SEADAGAIGRFDPETAR-FTVLPIP 315 (353)
T ss_pred CCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe-eccccCceeecCcccce-EEEecCC
Confidence 7788888888764444445556666677787777665333 44445778888877654 3444433
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.81 E-value=13 Score=41.07 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEE----ccCCCCeEEEEEcCC---CCEEEEEeC-C-------
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTNL----EEHSSLITDVRFSPS---MPRLATSSF-D------- 701 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~l----~~h~~~I~~v~fsp~---~~~Lasgs~-D------- 701 (847)
..+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........|+|+|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999987775 5699999999 33333 2222 123456899999995 334433332 1
Q ss_pred -CcEEEEECCCCC-------ceEEEecc---CCCCeEEEEEecCCCeEEEEEeC
Q 003106 702 -KTVRVWDADNPG-------YSLRTFMG---HSASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 702 -g~V~iWD~~~~~-------~~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~ 744 (847)
..|.-|...... .++..+.. .......|.|.|+|. |+++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 234444443321 11222222 233456799999985 5555554
No 465
>PLN02153 epithiospecifier protein
Probab=84.75 E-value=31 Score=38.12 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=31.4
Q ss_pred CcEEEEeccCCceeeEeEEeec---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRA---STSKVICCHFSSDGKLLATGGHD-----------KKAVLWHTDTLK 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~D-----------g~V~vwd~~~~~ 671 (847)
..+.++|+.+. .|..+..+.. ........+..-++++++.|+.+ ..|.+||.++.+
T Consensus 101 ~~v~~yd~~t~-~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 101 SDFYSYDTVKN-EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CcEEEEECCCC-EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 46788898876 6665544311 11122222223367777887754 247788887643
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.60 E-value=4.2 Score=48.30 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---CCceEEEe-cc---------------------CCCCeEEEEEec---CCCeEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADN---PGYSLRTF-MG---------------------HSASVMSLDFHP---NKDDLICS 741 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~---~~~~~~~~-~~---------------------h~~~V~sl~fsp---~g~~ll~s 741 (847)
.+...|+.+..||.|...+... .+...... .. ....+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888899888877654 12221111 10 123455666665 23457779
Q ss_pred EeCCCcEEEEECCCCceEEEEee
Q 003106 742 CDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 742 ~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+.|++||+||++++.++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999776643
No 467
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=84.55 E-value=56 Score=34.19 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=87.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE--EcCCCCE--EEEEeC--CCcEEEEECCCCCceEEEe
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPR--LATSSF--DKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~--fsp~~~~--Lasgs~--Dg~V~iWD~~~~~~~~~~~ 719 (847)
-+|+...|++....+-++|||+. ++.+..+....-.-.+++ |--.|.. |+.+|. ..+|.+|.++-....+..+
T Consensus 63 t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~si 141 (364)
T COG4247 63 TNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESI 141 (364)
T ss_pred CCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeec
Confidence 35677788888888889999987 555555532221111222 2223332 444442 4568888887533334433
Q ss_pred cc-------CCCCeEEEEEec--C-CCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 720 MG-------HSASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 720 ~~-------h~~~V~sl~fsp--~-g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
.. ..+.++.++... . |.++++....+|.|+-|.+-. .+.++.|+.....--|+.-+....++.
T Consensus 142 tD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYI 221 (364)
T COG4247 142 TDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYI 221 (364)
T ss_pred cCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEE
Confidence 21 234566666643 3 556666777889998887642 356777777766666666666667777
Q ss_pred EcCCCcEEEEc
Q 003106 783 KLDAGDIQISD 793 (847)
Q Consensus 783 ~~~~g~i~i~d 793 (847)
+.++-.|.-++
T Consensus 222 aeEdvaiWK~~ 232 (364)
T COG4247 222 AEEDVAIWKYE 232 (364)
T ss_pred eeccceeeecc
Confidence 66654443333
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.24 E-value=5.4 Score=47.41 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CceeEEE--cc--------------------CCCCeEEEEEcC----CCCEEEE
Q 003106 648 SDGKLLATGGHDKKAVLWHTDT----LKSKTNL--EE--------------------HSSLITDVRFSP----SMPRLAT 697 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l--~~--------------------h~~~I~~v~fsp----~~~~Las 697 (847)
.+...|+.+..||.+....... +...... .. ....+.+++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888899888776553 2221111 10 123456667766 6779999
Q ss_pred EeCCCcEEEEECCCCCceEEEe
Q 003106 698 SSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.+.|++||+||+.+ +.++.+.
T Consensus 236 l~~D~~LRiW~l~t-~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLET-GQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTT-TCEEEEE
T ss_pred EeCCCeEEEEECCC-CeEEEEe
Confidence 99999999999998 6665544
No 469
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=39 Score=40.47 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=33.4
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
-.|+|+++... .+..+.-..+.+..+.|+.+. .|++...||+|+||++-
T Consensus 64 ~~I~If~~sG~----lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNISGQ----LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecccc----chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 34677776532 333333334488899999665 55566799999999986
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.05 E-value=27 Score=35.76 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEE---ECC--CCceeE-EEccC-
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLW---HTD--TLKSKT-NLEEH- 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vw---d~~--~~~~~~-~l~~h- 679 (847)
...+|.+|++... ......++..- +.|..+.++..|++|+|--.+ ..+|+| +.. ...+++ .+-||
T Consensus 36 ~g~~Vev~~l~~~-~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~ 113 (215)
T PF14761_consen 36 SGCKVEVYDLEQE-ECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR 113 (215)
T ss_pred CCCEEEEEEcccC-CCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence 4456899999843 44555555543 889999999999999996432 256775 221 112222 11121
Q ss_pred --------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 680 --------------------SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 680 --------------------~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
...+.||+-.|-...|+.|+ ++++.||.+..
T Consensus 114 v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 114 VTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 23566788777655565665 57788887754
No 471
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.02 E-value=18 Score=41.33 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.5
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
.+++++-..+|.|.+|+++
T Consensus 201 r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 201 RRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp TTEEEEEESSE-EEEEEE-
T ss_pred cCEEEEEeCCCcEEEEEEe
Confidence 3789999999999999986
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.68 E-value=73 Score=34.84 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce---eEEEcc---CCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 003106 649 DGKLLATGGHDK-----KAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 712 (847)
Q Consensus 649 dg~~Lasgs~Dg-----~V~vwd~~~~~~---~~~l~~---h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~~ 712 (847)
++++++.|+.++ .|..||+.+.+. ...+.. ..... +++.. +++..+.|+. ...|.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 566777777643 566677765443 122211 11111 22222 3555566664 235888898863
Q ss_pred CceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCC----cEEEEECCCCce
Q 003106 713 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSC 758 (847)
Q Consensus 713 ~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg----~V~iWD~~~~~~ 758 (847)
..... .+... ......+..-+ ..+++.|+.++ .+.+||+++.+.
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 32211 11111 11111222223 34777777653 356888887653
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.63 E-value=41 Score=40.29 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEc-cCC------CCeEEEEEcCCCCEEEEEeC-C---CcE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE-EHS------SLITDVRFSPSMPRLATSSF-D---KTV 704 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~-~h~------~~I~~v~fsp~~~~Lasgs~-D---g~V 704 (847)
.+.|..|.|..+++.+++.-..|.|.+||...+ +.+..++ .+. ..|....+.-..+++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999322 2211222 122 22322222222345554443 2 247
Q ss_pred EEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----C--ceEEEEEec
Q 003106 705 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----S--FCCWCVNAM 775 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~--~~v~~~~~~ 775 (847)
|++.+......+..+. .+........|+...+.+..- .+++|.+|++...+..+++... . ..+.++...
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 8888832223333332 122223334444433334323 5789999999988777766543 1 234555544
Q ss_pred CCCEEEEEcCCCcEEEEcCC
Q 003106 776 NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~ 795 (847)
...++..+ .+..|++.|..
T Consensus 287 s~nRvLLs-~~nkIyLld~~ 305 (670)
T PF10395_consen 287 SPNRVLLS-VNNKIYLLDLK 305 (670)
T ss_pred CCCeEEEE-cCCEEEEEeeh
Confidence 45555433 44566666633
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.55 E-value=36 Score=42.26 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=72.4
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCCCC----------eEEEEEcCCCCEEEEEeCCC
Q 003106 639 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSL----------ITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 639 ~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~~~----------I~~v~fsp~~~~Lasgs~Dg 702 (847)
....+++|+| +.+.||.....|...|||+... ..+.....+.+. -..|.|..+.+.|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4677999999 6679999999999999999211 111111122222 23678888877787776 45
Q ss_pred cEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 703 TVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 703 ~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.++|+++..... .........|..+.-++.....++.-. ...|...|+..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 68899998732211 122334567878887776332221222 35787888877
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.70 E-value=54 Score=35.39 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCCCCcEEEEeccCCcee--eEeEEee-cCCCCEE-EEEEcC--CCCEEEEEe-CCCcEEEEECCCCcee--EEEc----
Q 003106 611 DPRDAGGRGMDVSQGFSF--KEANSVR-ASTSKVI-CCHFSS--DGKLLATGG-HDKKAVLWHTDTLKSK--TNLE---- 677 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~--~~~~~l~-~h~~~V~-~l~fsp--dg~~Lasgs-~Dg~V~vwd~~~~~~~--~~l~---- 677 (847)
+++||+|.-|....+.+. ..+..+. .-.+.|+ .+++.. .+.+|+.+. ..++|.|||-.=.++. ..+.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 345667777775443220 1112221 1123333 455543 456777665 4689999985421110 0111
Q ss_pred ------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecC-----CCeE
Q 003106 678 ------------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN-----KDDL 738 (847)
Q Consensus 678 ------------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~-----g~~l 738 (847)
+..-.|+-..-.++++.=+.|-.-|.|-+||.. +..++.+. +.-...+.|+..|- ...|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 011122222223333333444556789999997 46666663 33445667776552 2347
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+---.||+|.+||..+++.+..+.....
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCC
Confidence 76777899999999999998887776543
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.44 E-value=23 Score=38.16 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEcc-----CCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG------HDKKAVLWHTDTLKSKTNLEE-----HSSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~V~vwd~~~~~~~~~l~~-----h~~~ 682 (847)
-..+++||..+. .|..... +-.+.|++|.|..+.++++.|. ....+..||+++... ..+.+ -.++
T Consensus 15 C~~lC~yd~~~~-qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNS-QWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCC-EeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCc
Confidence 345778887766 4443322 2467899999997777777764 345688899886543 33333 2367
Q ss_pred eEEEEEcC-CCCEE-EEEe-C--CCcEEEEECCC
Q 003106 683 ITDVRFSP-SMPRL-ATSS-F--DKTVRVWDADN 711 (847)
Q Consensus 683 I~~v~fsp-~~~~L-asgs-~--Dg~V~iWD~~~ 711 (847)
|+.+.+.. |+..+ +.|. . +..|..||-..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 88887743 33334 3433 2 33477776554
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.36 E-value=16 Score=41.62 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 649 DGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-------RLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 649 dg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-------~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|..+|+ .|+....++-.|++.|+++.++..|... -|.|.|..+ .-+.|-.|..|.-.|.|-.+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 555554 4555667888899999999999888775 577888543 23455557777777777644333222
Q ss_pred cCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCC
Q 003106 721 GHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 721 ~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.....++.-.|+.- ..-+++.++..|.||+||--.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig 592 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG 592 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence 12233333334321 122677999999999999654
No 478
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.35 E-value=0.14 Score=57.04 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=81.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEec
Q 003106 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
....|-+.+.-|+.++.+..|..||-. ++....+. ..+...+++|..+++.+ +.+-..+.+.+||+.+....-..+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677766668888888899999854 44433332 34456688888888865 4456688999999986322112222
Q ss_pred c-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 721 G-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 721 ~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
+ |.... +.|++.+..++ .+...|.|+|++..+.+.+.+...|...+.+++..
T Consensus 116 g~~s~sl--l~wsKg~~el~-ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPELV-IGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred CcchHHH--HhhccCCcccc-ccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 2 22222 67888776544 67778999999988766554444344444444433
No 479
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.40 E-value=5.3 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 733 p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
|+++++++++-.++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 567888888888899999999999888877764
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.52 E-value=17 Score=43.09 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=44.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.++++.-+|.|..++.+..||.|++|+....+...... ...+-..+.|...| |++...|..+.-|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 46677778999999999999999999976544322111 12233445565444 6666667777777543
No 481
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.42 E-value=92 Score=34.28 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--ceeE-----EEccCCC--------CeEEEEEcCCCCE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKK------AVLWHTDT--L--KSKT-----NLEEHSS--------LITDVRFSPSMPR 694 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~------V~vwd~~~--~--~~~~-----~l~~h~~--------~I~~v~fsp~~~~ 694 (847)
-+.+..|.+.+++..+++.+++|. +..+++.. + ..+. .+..-.+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788889876667777788887 65555442 1 1111 1111111 3458888777877
Q ss_pred EEEEeCC------CcEEEEECCCCCceEEEe---------------ccCCCCeEEEEEecCCCeEEEE
Q 003106 695 LATSSFD------KTVRVWDADNPGYSLRTF---------------MGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 695 Lasgs~D------g~V~iWD~~~~~~~~~~~---------------~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+++.-.+ ..|+.+|.. +..+..+ ........+|+++|+|..+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 7777667 778888765 3333222 1134568899999999866543
No 482
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=80.11 E-value=44 Score=39.06 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCcEEEEeccCCc--eeeEeEEeecC---CCC--EEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCe
Q 003106 613 RDAGGRGMDVSQGF--SFKEANSVRAS---TSK--VICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLI 683 (847)
Q Consensus 613 ~d~~v~vwd~~~~~--~~~~~~~l~~h---~~~--V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I 683 (847)
..+.|.||-+.... .-+.+..-..+ .-+ --.|.|+|....|++=..+..-.++++. +......+ ...+.|
T Consensus 80 HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~I 158 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLI 158 (671)
T ss_pred ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceE
Confidence 45678899876321 11211111111 111 2267899988888776655555566665 33444445 455789
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 003106 684 TDVRFSPSMPRLATSS-FDKTVRVWDADN 711 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~ 711 (847)
.|.+|.+||.+|+.+- ..=.-+|||-..
T Consensus 159 hCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 9999999999886653 344578898654
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.93 E-value=44 Score=38.98 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=62.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC---eEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 003106 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL---ITDVRFSPSMPRLATSSF-------------DKTVRVW 707 (847)
Q Consensus 644 l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~---I~~v~fsp~~~~Lasgs~-------------Dg~V~iW 707 (847)
+.+.++|.+++..+ ..++.+|+. |+.+..+..-... =.++.+-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678898887665 788888876 6665554422211 246777888988876661 1123444
Q ss_pred ECCCCCceEEEec--cC-------------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 708 DADNPGYSLRTFM--GH-------------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 708 D~~~~~~~~~~~~--~h-------------------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
| .+ ++.+..+. .| ---+.+|.+.+....+++|+-.-..|...|.++++..-
T Consensus 230 d-~t-G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 230 D-PT-GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp --TT-S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred C-CC-CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 4 33 33333221 01 02378999999767788676655689999988988877
Q ss_pred EEeeC
Q 003106 761 VFKVE 765 (847)
Q Consensus 761 ~~~~~ 765 (847)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
No 484
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=79.79 E-value=1.2e+02 Score=38.73 Aligned_cols=273 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCeeeccccCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCC
Q 003106 538 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDA 615 (847)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~ 615 (847)
..+....+..+..+....+--++.+|-...++.+..+ +||.+++.+. .+.....+...-++.+|+-+.....++.-.
T Consensus 391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~-~d~~~N~evvaG~Ge~Clp~desCGDGalA 469 (1899)
T KOG4659|consen 391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP-QDSRNNYEVVAGDGEVCLPADESCGDGALA 469 (1899)
T ss_pred CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc-cccccCeeEEeccCcCccccccccCcchhc
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----------------
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------------- 678 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----------------- 678 (847)
.-.-...-+| |+|+.+|.+.++-+ ..||+.|-. ..+.++.+
T Consensus 470 ~dA~L~~PkG------------------Ia~dk~g~lYfaD~--t~IR~iD~~--giIstlig~~~~~~~p~~C~~~~kl 527 (1899)
T KOG4659|consen 470 QDAQLIFPKG------------------IAFDKMGNLYFADG--TRIRVIDTT--GIISTLIGTTPDQHPPRTCAQITKL 527 (1899)
T ss_pred ccceeccCCc------------------eeEccCCcEEEecc--cEEEEeccC--ceEEEeccCCCCccCccccccccch
Q ss_pred ---CCCCeEEEEEcC--------CCCEEEEEeCCCcEEEE-------ECCCCCceEEEeccCCCCeE--EEEEecCCCeE
Q 003106 679 ---HSSLITDVRFSP--------SMPRLATSSFDKTVRVW-------DADNPGYSLRTFMGHSASVM--SLDFHPNKDDL 738 (847)
Q Consensus 679 ---h~~~I~~v~fsp--------~~~~Lasgs~Dg~V~iW-------D~~~~~~~~~~~~~h~~~V~--sl~fsp~g~~l 738 (847)
|-.+-++++.+| |.+.++--+.++.|+|- ++.........+..|..-+. +|+|.++|..+
T Consensus 528 ~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~ly 607 (1899)
T KOG4659|consen 528 VDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALY 607 (1899)
T ss_pred hheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEE
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE-----------------ecCCCEEEEEcCCCcEEEEcCCccccee
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN-----------------AMNRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~-----------------~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
++-.+.-..=+|--+.+...+..+.+....+.|.. ..+...-.+.+.+|.|.|-|........
T Consensus 608 vaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~ 687 (1899)
T KOG4659|consen 608 VAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRK 687 (1899)
T ss_pred EEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhh
Q ss_pred eecccccCCCCccccccccccccCCCcEEEEEeCCCe
Q 003106 802 FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS 838 (847)
Q Consensus 802 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~ 838 (847)
.......-.......+.+..... +++=..+|.
T Consensus 688 Vs~~~~~~~~sr~YEi~~p~~QE-----~Y~Fnr~Gq 719 (1899)
T KOG4659|consen 688 VSARMAKYDGSRTYEITDPERQE-----KYTFNRHGQ 719 (1899)
T ss_pred hhhcccccCCCceeeccCcccce-----eEEEeccce
No 485
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.60 E-value=7.4 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=27.9
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 648 SDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 648 pdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
||+++|+++. .+++|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777776655 5789999999988888877653 33344544
No 486
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.57 E-value=75 Score=38.58 Aligned_cols=118 Identities=9% Similarity=0.137 Sum_probs=58.4
Q ss_pred eEEEEEec-CCCeEEEEEeCCCcEEEEECCC-------C----c---------eEEEEeeCCceEEEEEec--CCCEEEE
Q 003106 726 VMSLDFHP-NKDDLICSCDGDGEIRYWSINN-------G----S---------CTRVFKVESFCCWCVNAM--NRPCLWD 782 (847)
Q Consensus 726 V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~l~~ 782 (847)
|+.|.... .+..+|+.|.+||.|.+|.+++ . + +...++. ...+|.+++. ....+.+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEE
Confidence 44444332 2345788999999999997732 1 0 1112222 3356777765 4444444
Q ss_pred -EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCC-cEEEEEeCCCeEEEEEc
Q 003106 783 -KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRE-CCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 783 -~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~l~sGs~DG~V~vW~~ 844 (847)
+.....|.+|-...................++.+.+--......+ ..|++++-.|.|.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 444455666653221111111111112222333222211111112 26888899999998876
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.43 E-value=68 Score=35.42 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=22.6
Q ss_pred CcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGKLLATGGHD 659 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~D 659 (847)
..+..||..+. .|+.+...... ......+. .-++++.+.|+.+
T Consensus 85 ~~v~~Yd~~~~-~W~~~~~~~p~~~~~~~~~~-~~~g~IYviGG~~ 128 (346)
T TIGR03547 85 DDVYRYDPKKN-SWQKLDTRSPVGLLGASGFS-LHNGQAYFTGGVN 128 (346)
T ss_pred ccEEEEECCCC-EEecCCCCCCCcccceeEEE-EeCCEEEEEcCcC
Confidence 35677888876 66655421111 11111121 2478888888764
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.86 E-value=26 Score=37.72 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCCceEEEecc-----CCCCeEE
Q 003106 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMG-----HSASVMS 728 (847)
Q Consensus 660 g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------~Dg~V~iWD~~~~~~~~~~~~~-----h~~~V~s 728 (847)
..|++||..+.+-...-.+-.+.|++|.|..+.+.++.|. ....+..||+.+ .....+.+ -.+.|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEEE
Confidence 4699999887665544445567899999996666666664 345688999986 23444443 2367888
Q ss_pred EEEec-CCCeEEEEEe-C--CCcEEEEECCCCceE
Q 003106 729 LDFHP-NKDDLICSCD-G--DGEIRYWSINNGSCT 759 (847)
Q Consensus 729 l~fsp-~g~~ll~s~s-~--Dg~V~iWD~~~~~~~ 759 (847)
+.+.. ++..++++|. . +..|..||-.....+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 88753 3444554443 2 345777776554433
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.36 E-value=8.4 Score=47.24 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE-EeCCC-----cEEEEECCCCCceEEEeccCCCCeEEEEEe
Q 003106 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK-----TVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (847)
Q Consensus 659 Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las-gs~Dg-----~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs 732 (847)
.+.|.|-|.+.......-..+...|.+-+|||||+.|+- .+.++ .|++-|+++.+.-+.++.-....|-.-...
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 357888888755554331457888999999999999876 45444 489999998776666676667777777777
Q ss_pred cCCCeEEEEEe
Q 003106 733 PNKDDLICSCD 743 (847)
Q Consensus 733 p~g~~ll~s~s 743 (847)
.+|+..|+-.+
T Consensus 408 e~gdt~ivyv~ 418 (912)
T TIGR02171 408 ENGDTVIVYVS 418 (912)
T ss_pred CCCCeEEEEEc
Confidence 88877665443
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.77 E-value=8.9 Score=27.40 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=24.0
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEE
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGD--GEIRYW 751 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iW 751 (847)
......-....|+|||+.++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455677899999999999888888 777776
No 491
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=77.30 E-value=29 Score=40.32 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=86.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
..+|.++.|.-.| .|..|+.|| +..||..+++.+..-...- ..|..+..+-.+ .|..|+++| |++.+.+. ....
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G-~~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG-WRAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh-cccc
Confidence 4567788887666 566677776 6677877777765443332 556666655555 577777665 67777664 1111
Q ss_pred EEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--CCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 717 RTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--ESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 717 ~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
... .--...|..+.-+..|... .|+..|..+.---+.+-.+...+. .-..|..+..+.+..+|.+..++.+.+-.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lW--iGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELW--IGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred ccCCCCcchheeeeecccCCCEE--EeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 111 1123445555555555533 455555443322222221112221 22345667777888999999998887766
Q ss_pred CCccc
Q 003106 794 SLFIN 798 (847)
Q Consensus 794 ~~~~~ 798 (847)
.....
T Consensus 317 a~w~~ 321 (671)
T COG3292 317 ADWKR 321 (671)
T ss_pred chhhh
Confidence 54433
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.26 E-value=1e+02 Score=33.75 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=33.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcee--EEEccCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCC
Q 003106 649 DGKLLATGGHD-----KKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFDK----TVRVWDADN 711 (847)
Q Consensus 649 dg~~Lasgs~D-----g~V~vwd~~~~~~~--~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg----~V~iWD~~~ 711 (847)
++++.+.|+.+ ..|.+||+.+.+-. ..+.... .....+..-+++..+.|+.++ .+.+||.++
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 56777777742 35788888754432 1121111 111122223456667777654 356888886
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=76.72 E-value=38 Score=41.10 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 675 (847)
.+..+|.|.++...+............|...|+++.+...+-+++.++.| .+++++.++.+....
T Consensus 640 was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl~hlqd 704 (925)
T KOG3522|consen 640 WASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETLWHLQD 704 (925)
T ss_pred eeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccccCCccc
Confidence 46678888888887643222333334577889999998777676666655 566666665444333
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=76.10 E-value=77 Score=39.53 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=54.4
Q ss_pred cEEEEECCCCceeEEEccCC----CCeEEEEEcCCCCE--EEEEe-----------CCCcEEEEECCCCCceEEEecc--
Q 003106 661 KAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPR--LATSS-----------FDKTVRVWDADNPGYSLRTFMG-- 721 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~----~~I~~v~fsp~~~~--Lasgs-----------~Dg~V~iWD~~~~~~~~~~~~~-- 721 (847)
.|+++|..+++.+..+.... -.|.++.|+..... +++|+ .+|.++.|++-..+..+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37777777777665554221 23566667654432 33332 2345777776554554443322
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~ 761 (847)
-.+.| .+.+|..+++++.. ...+++||+-..+.++.
T Consensus 934 ~~~~v--~Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk 969 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGV--GRFLRLYDLGKKKLLRK 969 (1205)
T ss_pred CCccc--eEEeccCCEEEEec--ccEEEEeeCChHHHHhh
Confidence 22344 45567767666433 46999999987665443
No 495
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.70 E-value=30 Score=43.96 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=52.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEE--EEECCCC---c-e----------------eEEEc-cCCCCeEEEEEcCCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAV--LWHTDTL---K-S----------------KTNLE-EHSSLITDVRFSPSMP 693 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~--vwd~~~~---~-~----------------~~~l~-~h~~~I~~v~fsp~~~ 693 (847)
....|+|+....+|+.|++|- ||.|+ +|....+ + + +..+. .+.++|..|.+.....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 356788999777888777764 55443 2222221 1 1 11123 4677899999998888
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 003106 694 RLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~ 712 (847)
.+++-+..|+|++||+...
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 9999999999999999864
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.28 E-value=1.7e+02 Score=34.13 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=48.2
Q ss_pred CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC---CeEEEEEecC
Q 003106 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA---SVMSLDFHPN 734 (847)
Q Consensus 658 ~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~---~V~sl~fsp~ 734 (847)
..+.+.++|.+ |.+...+.........+.+.++|.+++... ..++.+|+. +..+..+..-.. .=..+.+.|+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCC
Confidence 34566677754 555555543222222266778888776555 788888886 445444432111 1245778889
Q ss_pred CCeEEEEEe-------C-----CCcEEEEECCCCceEEEEe
Q 003106 735 KDDLICSCD-------G-----DGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 735 g~~ll~s~s-------~-----Dg~V~iWD~~~~~~~~~~~ 763 (847)
|..|+++.. . +..|..+| .+|+.+..+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd 240 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWD 240 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEe
Confidence 876654441 0 22466777 7787777665
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.77 E-value=1.6e+02 Score=33.51 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce----
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---- 758 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---- 758 (847)
...+..++++.+++.+..-..++-||--........ ......++++.|.+++..++ ++ .+|.| +|....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l-~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWL-LT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEE-Ee-CCceE-EEecCCCCccccc
Confidence 344566777776666654433444544321011112 22345688999999987443 43 45665 444444431
Q ss_pred -EEEEee--CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC
Q 003106 759 -TRVFKV--ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 759 -~~~~~~--~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
...... ....+..+.+.++..+|.....|.+......-.. +..... ...+....+++.+. +....++.+.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~t---W~~~~~--~~~~~~~ly~v~f~--~~~~g~~~G~ 389 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKS---WKRDKG--ADNIAANLYSVKFF--DDKKGFVLGN 389 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcc---eeEccc--cCCCCcceeEEEEc--CCCceEEEeC
Confidence 222222 1234677777778888988888887766432111 111110 01111222233222 2345666778
Q ss_pred CCeEEEEE
Q 003106 836 DSSLSSFI 843 (847)
Q Consensus 836 DG~V~vW~ 843 (847)
+|.|.-|.
T Consensus 390 ~G~il~~~ 397 (398)
T PLN00033 390 DGVLLRYL 397 (398)
T ss_pred CcEEEEeC
Confidence 88877653
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=74.75 E-value=56 Score=36.01 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=62.2
Q ss_pred CEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEc---------------cCCCCeEEEEEcCCCCEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKTNLE---------------EHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~~l~---------------~h~~~I~~v~fsp~~~~Lasg 698 (847)
..-+|++.++|.++++.-.+ ..|+.++.+ ++.+..+. .....+.+|+++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34467777788888887777 788888876 65544441 134568899999999977665
Q ss_pred eC-----CC--c-------EEEEECC--CCCceEEEe----cc-----CCCCeEEEEEecCCCeEE
Q 003106 699 SF-----DK--T-------VRVWDAD--NPGYSLRTF----MG-----HSASVMSLDFHPNKDDLI 739 (847)
Q Consensus 699 s~-----Dg--~-------V~iWD~~--~~~~~~~~~----~~-----h~~~V~sl~fsp~g~~ll 739 (847)
.. |+ . +||+..+ +.+.....+ .. ....|..+.+.++++.++
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 42 32 1 5555444 322222222 21 345688888888877444
No 499
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=73.92 E-value=42 Score=37.25 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred ccCCCCCceEEeeecCCCCCCCCcEEEEec--cCCceeeE---eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 593 EDGSLDDNVESFLSHDDTDPRDAGGRGMDV--SQGFSFKE---ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT 667 (847)
Q Consensus 593 ~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~--~~~~~~~~---~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~ 667 (847)
+.+..++.+..| ++..+|-+...+. .+.....+ ......-.++-..|+|...+.-|+.| |...-||.+
T Consensus 69 ~~~v~dg~il~~-----~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va--DAYlGL~~V 141 (376)
T KOG1520|consen 69 YTGVVDGRILKY-----TGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA--DAYLGLLKV 141 (376)
T ss_pred eEEEECCceEEE-----eccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE--ecceeeEEE
Q ss_pred C-CCceeEEEccCCCC-----eEEEEEcCCCCEEEEEeCC-----------------CcEEEEECCCCCceEEEeccCCC
Q 003106 668 D-TLKSKTNLEEHSSL-----ITDVRFSPSMPRLATSSFD-----------------KTVRVWDADNPGYSLRTFMGHSA 724 (847)
Q Consensus 668 ~-~~~~~~~l~~h~~~-----I~~v~fsp~~~~Lasgs~D-----------------g~V~iWD~~~~~~~~~~~~~h~~ 724 (847)
. .++....+..+... ..+++++++|...+|-+.+ |.+.-||..+ +..+++...-.
T Consensus 142 ~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~L~ 219 (376)
T KOG1520|consen 142 GPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDGLY 219 (376)
T ss_pred CCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcc--cchhhhhhccc
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
-.+.|+.+|++..++++=..-..|+-|=++..+. -....+-......+..+.+..+|.+...+.-..|+
T Consensus 220 F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~ 291 (376)
T KOG1520|consen 220 FPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWR 291 (376)
T ss_pred ccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHH
No 500
>PLN02193 nitrile-specifier protein
Probab=72.93 E-value=79 Score=36.80 Aligned_cols=144 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred CcEEEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEEEc---cCCCCeEE
Q 003106 615 AGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKK-----AVLWHTDTLKSKTNLE---EHSSLITD 685 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~-----V~vwd~~~~~~~~~l~---~h~~~I~~ 685 (847)
..+.++|+.+. .|..+..+ ..........+..-++++++.|+.++. +.+||+.+.+-...-. ........
T Consensus 244 ndv~~yD~~t~-~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 244 NGFYSFDTTTN-EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred ccEEEEECCCC-EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEECCCCCceEEEeccC---CCCeEEEEEecCCCeEEEEEeCCC------------
Q 003106 686 VRFSPSMPRLATSSFD----KTVRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDGDG------------ 746 (847)
Q Consensus 686 v~fsp~~~~Lasgs~D----g~V~iWD~~~~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~s~s~Dg------------ 746 (847)
....-+++.++.++.+ ..|.+||+.+ .....+... ...-...+...-+..+++.|+.+.
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~dv~~yD~~t--~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ--DKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred EEEEECCcEEEEECCCCCccCceEEEECCC--CEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccce
Q ss_pred --cEEEEECCCCceEEE
Q 003106 747 --EIRYWSINNGSCTRV 761 (847)
Q Consensus 747 --~V~iWD~~~~~~~~~ 761 (847)
.+.+||+.+.+....
T Consensus 401 ~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 401 TDGTFALDTETLQWERL 417 (470)
T ss_pred eccEEEEEcCcCEEEEc
Done!