Query 003106
Match_columns 847
No_of_seqs 931 out of 4397
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 5.1E-33 1.7E-37 307.5 35.3 284 554-846 31-331 (344)
2 1vyh_C Platelet-activating fac 100.0 2.8E-31 9.7E-36 300.4 35.8 275 552-844 107-409 (410)
3 4g56_B MGC81050 protein; prote 100.0 1E-31 3.6E-36 298.3 30.1 284 551-845 40-342 (357)
4 3ow8_A WD repeat-containing pr 100.0 2.5E-30 8.5E-35 282.8 35.0 279 550-845 29-320 (321)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-30 1.1E-34 284.6 33.9 284 554-846 17-335 (345)
6 2hes_X YDR267CP; beta-propelle 100.0 4.8E-30 1.6E-34 281.4 33.5 288 552-846 13-328 (330)
7 3frx_A Guanine nucleotide-bind 100.0 8.1E-30 2.8E-34 278.2 35.0 288 550-846 14-317 (319)
8 1got_B GT-beta; complex (GTP-b 100.0 1.1E-29 3.9E-34 279.5 36.2 277 551-843 53-340 (340)
9 2ynn_A Coatomer subunit beta'; 100.0 8.2E-30 2.8E-34 276.0 34.5 277 552-845 12-301 (304)
10 1erj_A Transcriptional repress 100.0 2.4E-29 8.2E-34 282.7 36.6 286 552-846 63-389 (393)
11 2pbi_B Guanine nucleotide-bind 100.0 5.5E-29 1.9E-33 275.9 36.5 278 551-843 62-354 (354)
12 3iz6_a 40S ribosomal protein R 100.0 1.5E-29 5E-34 283.2 29.9 285 551-846 64-375 (380)
13 4ery_A WD repeat-containing pr 100.0 2.3E-28 8E-33 264.5 37.9 276 551-845 21-311 (312)
14 2ynn_A Coatomer subunit beta'; 100.0 6.6E-29 2.2E-33 268.9 32.0 227 610-847 30-260 (304)
15 2xzm_R RACK1; ribosome, transl 100.0 2.4E-28 8.3E-33 269.0 35.1 287 551-846 19-340 (343)
16 1vyh_C Platelet-activating fac 100.0 1.2E-28 4.2E-33 278.8 30.8 224 610-846 125-369 (410)
17 2pm7_B Protein transport prote 100.0 4.2E-28 1.4E-32 261.7 32.2 229 613-845 29-284 (297)
18 1k8k_C P40, ARP2/3 complex 41 100.0 6.4E-28 2.2E-32 266.1 33.1 287 552-846 7-361 (372)
19 3dm0_A Maltose-binding peripla 100.0 4.3E-28 1.5E-32 292.9 34.6 289 551-847 380-694 (694)
20 1nr0_A Actin interacting prote 100.0 6.9E-28 2.4E-32 287.0 34.5 287 548-846 13-355 (611)
21 3ow8_A WD repeat-containing pr 100.0 8.4E-28 2.9E-32 262.8 32.1 234 551-794 78-319 (321)
22 3vl1_A 26S proteasome regulato 100.0 2.2E-28 7.6E-33 275.2 27.1 271 557-845 60-364 (420)
23 3dwl_C Actin-related protein 2 100.0 1.2E-28 4.1E-33 273.5 22.9 234 554-795 12-280 (377)
24 2hes_X YDR267CP; beta-propelle 100.0 2.1E-27 7.1E-32 260.4 31.7 228 610-845 29-279 (330)
25 4gqb_B Methylosome protein 50; 100.0 1.6E-27 5.4E-32 263.5 30.1 235 554-795 83-330 (344)
26 4aow_A Guanine nucleotide-bind 100.0 8E-27 2.7E-31 253.9 35.0 288 551-846 36-337 (340)
27 1gxr_A ESG1, transducin-like e 100.0 1.5E-26 5.2E-31 250.7 36.9 281 551-846 49-337 (337)
28 1got_B GT-beta; complex (GTP-b 100.0 5.2E-27 1.8E-31 258.2 32.7 234 553-793 97-340 (340)
29 1nr0_A Actin interacting prote 100.0 8.5E-27 2.9E-31 277.6 36.6 276 551-845 57-396 (611)
30 3k26_A Polycomb protein EED; W 100.0 1.3E-27 4.3E-32 262.5 25.9 284 550-846 15-366 (366)
31 3ei3_B DNA damage-binding prot 100.0 8.2E-27 2.8E-31 259.8 31.8 279 551-846 71-382 (383)
32 3bg1_A Protein SEC13 homolog; 100.0 1.6E-27 5.4E-32 259.6 23.3 228 612-845 32-292 (316)
33 2pm9_A Protein WEB1, protein t 100.0 2.4E-27 8.2E-32 265.9 24.9 286 552-846 66-414 (416)
34 4ery_A WD repeat-containing pr 100.0 5.5E-26 1.9E-30 245.8 34.6 227 610-846 40-268 (312)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-26 5.8E-31 254.7 30.2 230 610-845 33-282 (345)
36 2ymu_A WD-40 repeat protein; u 100.0 4.7E-26 1.6E-30 267.5 35.3 267 552-843 302-577 (577)
37 3zwl_B Eukaryotic translation 100.0 1.4E-25 4.8E-30 246.0 35.7 275 551-845 30-345 (369)
38 2pm9_A Protein WEB1, protein t 99.9 1E-26 3.6E-31 260.7 26.3 280 555-846 14-337 (416)
39 1r5m_A SIR4-interacting protei 99.9 8.2E-26 2.8E-30 253.0 33.5 282 552-845 44-424 (425)
40 3vl1_A 26S proteasome regulato 99.9 4E-26 1.4E-30 256.8 30.4 276 556-845 100-418 (420)
41 4g56_B MGC81050 protein; prote 99.9 2.2E-26 7.6E-31 255.3 27.4 237 552-795 93-342 (357)
42 2pbi_B Guanine nucleotide-bind 99.9 1.3E-25 4.5E-30 248.7 33.5 235 554-793 107-354 (354)
43 1gxr_A ESG1, transducin-like e 99.9 3.8E-25 1.3E-29 239.7 35.6 273 555-846 11-296 (337)
44 4aez_A CDC20, WD repeat-contai 99.9 6.6E-25 2.3E-29 246.7 38.7 272 555-846 95-380 (401)
45 4e54_B DNA damage-binding prot 99.9 1.6E-26 5.3E-31 263.3 24.1 280 552-846 118-430 (435)
46 3i2n_A WD repeat-containing pr 99.9 3.5E-26 1.2E-30 250.3 25.9 279 552-846 17-353 (357)
47 3frx_A Guanine nucleotide-bind 99.9 3.8E-25 1.3E-29 241.1 33.7 224 610-845 35-266 (319)
48 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.9E-25 1.7E-29 251.1 36.1 262 560-846 124-391 (445)
49 3gre_A Serine/threonine-protei 99.9 3.6E-26 1.2E-30 259.2 26.5 292 550-843 60-437 (437)
50 3jrp_A Fusion protein of prote 99.9 2.7E-25 9.1E-30 245.1 32.2 228 613-845 31-286 (379)
51 1erj_A Transcriptional repress 99.9 2.7E-25 9.4E-30 249.6 32.1 230 555-795 125-388 (393)
52 3v7d_B Cell division control p 99.9 6.7E-25 2.3E-29 250.8 35.8 263 560-846 127-421 (464)
53 1sq9_A Antiviral protein SKI8; 99.9 1.7E-25 6E-30 249.3 30.0 287 550-846 13-395 (397)
54 3odt_A Protein DOA1; ubiquitin 99.9 6.7E-25 2.3E-29 235.5 33.4 271 551-846 16-296 (313)
55 1p22_A F-BOX/WD-repeat protein 99.9 3.4E-25 1.2E-29 251.9 32.6 262 558-845 136-413 (435)
56 4gga_A P55CDC, cell division c 99.9 2.1E-24 7.1E-29 244.4 38.1 272 556-845 108-394 (420)
57 4h5i_A Guanine nucleotide-exch 99.9 3.1E-25 1.1E-29 247.0 30.5 283 553-845 14-342 (365)
58 3iz6_a 40S ribosomal protein R 99.9 8.1E-26 2.8E-30 252.7 25.1 231 610-845 83-328 (380)
59 2xzm_R RACK1; ribosome, transl 99.9 1.4E-24 4.9E-29 238.8 32.7 225 610-846 44-285 (343)
60 1pgu_A Actin interacting prote 99.9 1E-24 3.5E-29 257.3 33.4 283 548-845 13-327 (615)
61 4a11_B DNA excision repair pro 99.9 1.8E-24 6E-29 241.0 33.4 283 552-847 42-366 (408)
62 2ymu_A WD-40 repeat protein; u 99.9 2.1E-24 7.3E-29 253.4 35.7 268 552-844 261-537 (577)
63 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-25 4.5E-30 261.7 24.1 229 561-794 169-426 (524)
64 2aq5_A Coronin-1A; WD40 repeat 99.9 8.4E-25 2.9E-29 245.7 29.1 229 610-846 52-299 (402)
65 2pm7_B Protein transport prote 99.9 1.1E-24 3.8E-29 234.8 28.6 208 632-845 3-237 (297)
66 2ovr_B FBW7, F-BOX/WD repeat p 99.9 5E-24 1.7E-28 242.7 35.1 271 552-845 158-441 (445)
67 3dw8_B Serine/threonine-protei 99.9 7E-25 2.4E-29 248.5 26.0 256 553-846 28-373 (447)
68 3f3f_A Nucleoporin SEH1; struc 99.9 3.3E-24 1.1E-28 232.1 29.5 204 551-795 9-248 (351)
69 3k26_A Polycomb protein EED; W 99.9 1.1E-24 3.6E-29 239.1 24.0 227 611-846 40-318 (366)
70 3dm0_A Maltose-binding peripla 99.9 4.7E-24 1.6E-28 257.6 31.3 226 610-846 400-632 (694)
71 3gre_A Serine/threonine-protei 99.9 2.7E-24 9.3E-29 243.8 26.3 273 560-846 34-359 (437)
72 2j04_B YDR362CP, TAU91; beta p 99.9 1.2E-24 4E-29 253.7 23.2 227 610-845 178-427 (524)
73 3mkq_A Coatomer beta'-subunit; 99.9 1E-23 3.5E-28 258.1 32.6 276 552-845 12-301 (814)
74 3v7d_B Cell division control p 99.9 4E-23 1.4E-27 236.1 33.9 272 551-845 160-462 (464)
75 3bg1_A Protein SEC13 homolog; 99.9 1.2E-24 4E-29 236.9 19.8 209 633-846 8-247 (316)
76 3jro_A Fusion protein of prote 99.9 7.2E-24 2.4E-28 258.6 29.0 229 612-845 28-284 (753)
77 4ggc_A P55CDC, cell division c 99.9 1.1E-22 3.6E-27 219.0 34.7 272 556-845 28-314 (318)
78 3sfz_A APAF-1, apoptotic pepti 99.9 2.5E-23 8.4E-28 267.2 35.1 233 551-794 613-911 (1249)
79 4e54_B DNA damage-binding prot 99.9 3.9E-24 1.3E-28 243.4 23.8 185 610-797 137-328 (435)
80 2aq5_A Coronin-1A; WD40 repeat 99.9 2.1E-23 7.2E-28 234.3 29.4 278 557-846 38-342 (402)
81 2xyi_A Probable histone-bindin 99.9 1.6E-23 5.5E-28 238.1 28.6 231 610-845 146-409 (430)
82 3dwl_C Actin-related protein 2 99.9 2E-24 6.8E-29 239.5 20.6 226 610-844 28-279 (377)
83 2j04_A TAU60, YPL007P, hypothe 99.9 7.8E-24 2.7E-28 242.8 25.9 260 553-845 15-296 (588)
84 1k8k_C P40, ARP2/3 complex 41 99.9 4.3E-23 1.5E-27 227.3 30.3 226 610-846 25-274 (372)
85 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.1E-23 1.4E-27 235.9 31.1 179 610-794 120-337 (450)
86 3jrp_A Fusion protein of prote 99.9 1.9E-23 6.6E-28 230.2 26.1 211 630-846 3-240 (379)
87 4aez_A CDC20, WD repeat-contai 99.9 4.2E-23 1.4E-27 232.1 29.0 221 611-846 109-336 (401)
88 3lrv_A PRE-mRNA-splicing facto 99.9 8.9E-24 3.1E-28 232.3 22.4 263 562-843 45-330 (343)
89 1pgu_A Actin interacting prote 99.9 3.6E-23 1.2E-27 244.0 28.9 231 552-796 62-328 (615)
90 3mkq_A Coatomer beta'-subunit; 99.9 3.9E-23 1.3E-27 253.0 30.2 226 610-846 30-259 (814)
91 2oaj_A Protein SNI1; WD40 repe 99.9 7.7E-23 2.6E-27 253.8 32.7 196 552-761 16-248 (902)
92 1p22_A F-BOX/WD-repeat protein 99.9 1.3E-22 4.6E-27 230.5 32.1 215 610-845 148-364 (435)
93 3vu4_A KMHSV2; beta-propeller 99.9 1.7E-22 5.8E-27 223.7 31.2 270 552-845 18-335 (355)
94 1yfq_A Cell cycle arrest prote 99.9 9.2E-23 3.2E-27 222.1 28.1 267 551-838 9-315 (342)
95 1sq9_A Antiviral protein SKI8; 99.9 3.5E-23 1.2E-27 230.7 25.3 239 551-795 60-394 (397)
96 4aow_A Guanine nucleotide-bind 99.9 2E-22 7E-27 219.0 30.5 227 610-846 56-286 (340)
97 3odt_A Protein DOA1; ubiquitin 99.9 2.6E-22 8.8E-27 215.2 30.8 230 553-796 59-296 (313)
98 3i2n_A WD repeat-containing pr 99.9 3.2E-23 1.1E-27 226.7 24.0 225 613-845 42-290 (357)
99 1r5m_A SIR4-interacting protei 99.9 6.3E-23 2.2E-27 229.4 26.7 237 552-794 148-423 (425)
100 2xyi_A Probable histone-bindin 99.9 1E-22 3.4E-27 231.5 28.2 244 552-795 127-409 (430)
101 3zwl_B Eukaryotic translation 99.9 5E-22 1.7E-26 217.7 32.8 223 610-846 49-304 (369)
102 3ei3_B DNA damage-binding prot 99.9 1.7E-22 5.8E-27 224.8 28.3 209 628-846 63-282 (383)
103 3f3f_A Nucleoporin SEH1; struc 99.9 8.8E-23 3E-27 220.9 25.2 209 632-846 5-249 (351)
104 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-22 3.8E-27 232.3 26.8 207 636-844 100-337 (450)
105 2w18_A PALB2, fancn, partner a 99.9 2.1E-22 7.3E-27 217.8 26.3 222 614-844 62-355 (356)
106 4h5i_A Guanine nucleotide-exch 99.9 1.1E-22 3.6E-27 226.4 23.8 192 556-756 136-344 (365)
107 4gq1_A NUP37; propeller, trans 99.9 6.1E-23 2.1E-27 230.6 20.8 228 610-846 106-390 (393)
108 4gga_A P55CDC, cell division c 99.9 1.2E-21 4.1E-26 221.7 31.5 236 551-796 145-395 (420)
109 1yfq_A Cell cycle arrest prote 99.9 2.6E-22 8.9E-27 218.6 24.0 230 610-846 28-282 (342)
110 4a11_B DNA excision repair pro 99.9 2.4E-22 8.3E-27 223.7 24.1 226 615-846 23-276 (408)
111 3mmy_A MRNA export factor; mRN 99.9 3.1E-22 1.1E-26 219.2 23.9 215 627-846 28-304 (368)
112 3bws_A Protein LP49; two-domai 99.9 3.1E-21 1.1E-25 217.9 32.4 275 556-847 125-433 (433)
113 3sfz_A APAF-1, apoptotic pepti 99.9 8.4E-22 2.9E-26 252.9 30.9 232 603-846 621-871 (1249)
114 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-22 1.1E-26 219.9 22.6 222 610-845 53-291 (343)
115 2w18_A PALB2, fancn, partner a 99.9 4E-22 1.4E-26 215.7 21.1 216 551-793 109-354 (356)
116 3dw8_B Serine/threonine-protei 99.9 1.7E-21 5.7E-26 220.7 26.5 278 554-844 94-444 (447)
117 3mmy_A MRNA export factor; mRN 99.9 2.2E-21 7.5E-26 212.5 26.5 220 613-843 62-343 (368)
118 4ggc_A P55CDC, cell division c 99.9 1.8E-20 6.2E-25 201.5 31.9 222 612-846 42-273 (318)
119 3jro_A Fusion protein of prote 99.9 1.1E-21 3.8E-26 239.2 23.8 209 632-846 3-238 (753)
120 1l0q_A Surface layer protein; 99.9 4.8E-20 1.6E-24 205.2 33.9 250 574-846 14-275 (391)
121 2oaj_A Protein SNI1; WD40 repe 99.9 5.5E-21 1.9E-25 237.2 28.3 235 603-845 23-311 (902)
122 4gq1_A NUP37; propeller, trans 99.9 3.1E-21 1.1E-25 216.6 18.9 231 558-793 94-386 (393)
123 2j04_A TAU60, YPL007P, hypothe 99.9 1.7E-20 5.9E-25 215.1 23.0 220 552-795 51-296 (588)
124 1l0q_A Surface layer protein; 99.8 6.4E-19 2.2E-23 196.0 31.7 219 611-846 8-233 (391)
125 3vu4_A KMHSV2; beta-propeller 99.8 8.9E-19 3E-23 193.8 27.5 185 556-757 61-273 (355)
126 3bws_A Protein LP49; two-domai 99.8 5.4E-18 1.8E-22 191.3 29.9 225 610-846 139-390 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 7.5E-18 2.6E-22 190.7 28.9 214 614-845 158-386 (415)
128 1nir_A Nitrite reductase; hemo 99.8 2.3E-17 7.8E-22 193.3 26.8 271 561-847 145-459 (543)
129 2oit_A Nucleoporin 214KDA; NH2 99.8 4.6E-17 1.6E-21 185.4 27.2 200 555-756 38-279 (434)
130 3vgz_A Uncharacterized protein 99.8 2.7E-16 9.1E-21 171.6 31.4 230 555-796 42-303 (353)
131 3u4y_A Uncharacterized protein 99.8 2.1E-16 7.1E-21 171.4 28.8 276 560-846 4-304 (331)
132 1nir_A Nitrite reductase; hemo 99.8 1.5E-16 5.1E-21 186.4 28.5 279 556-847 181-515 (543)
133 2oit_A Nucleoporin 214KDA; NH2 99.7 4.6E-17 1.6E-21 185.3 19.0 158 636-796 90-278 (434)
134 1ri6_A Putative isomerase YBHE 99.7 7.2E-16 2.5E-20 167.1 26.4 221 614-844 59-306 (343)
135 2ojh_A Uncharacterized protein 99.7 3.9E-16 1.3E-20 164.6 23.6 224 610-846 17-258 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.7 6.3E-16 2.2E-20 187.3 25.4 280 554-845 37-412 (741)
137 2hqs_A Protein TOLB; TOLB, PAL 99.7 7.1E-16 2.4E-20 174.4 21.5 219 614-846 92-344 (415)
138 1ri6_A Putative isomerase YBHE 99.7 3.4E-15 1.2E-19 161.7 24.9 230 612-845 12-261 (343)
139 1xfd_A DIP, dipeptidyl aminope 99.7 1.3E-15 4.6E-20 183.8 22.7 204 556-764 19-298 (723)
140 3u4y_A Uncharacterized protein 99.7 1.4E-14 4.9E-19 156.8 27.3 222 612-846 17-252 (331)
141 3vgz_A Uncharacterized protein 99.6 3.7E-14 1.3E-18 154.5 28.4 223 556-785 91-333 (353)
142 2ojh_A Uncharacterized protein 99.6 9.7E-15 3.3E-19 153.8 22.8 211 574-796 24-258 (297)
143 1pby_B Quinohemoprotein amine 99.6 2.6E-14 9E-19 154.3 24.4 145 612-764 8-172 (337)
144 1k32_A Tricorn protease; prote 99.6 3.5E-14 1.2E-18 179.3 28.8 186 555-754 297-501 (1045)
145 3hfq_A Uncharacterized protein 99.6 5.6E-14 1.9E-18 153.7 26.4 225 613-844 61-315 (347)
146 2z3z_A Dipeptidyl aminopeptida 99.6 2.8E-14 9.6E-19 171.9 25.7 272 554-846 82-435 (706)
147 2ecf_A Dipeptidyl peptidase IV 99.6 2.6E-14 8.8E-19 173.1 22.2 227 556-795 111-412 (741)
148 3scy_A Hypothetical bacterial 99.6 1.3E-13 4.5E-18 151.7 25.9 234 555-795 51-336 (361)
149 1pby_B Quinohemoprotein amine 99.6 1.8E-13 6.2E-18 147.6 23.8 230 556-796 36-310 (337)
150 1xfd_A DIP, dipeptidyl aminope 99.6 1.1E-13 3.7E-18 167.0 23.4 179 612-796 34-289 (723)
151 1jmx_B Amine dehydrogenase; ox 99.6 2.3E-13 7.8E-18 147.8 23.1 146 612-765 18-185 (349)
152 3hfq_A Uncharacterized protein 99.6 4.4E-13 1.5E-17 146.5 24.9 228 613-845 14-270 (347)
153 2z3z_A Dipeptidyl aminopeptida 99.5 2.9E-13 9.9E-18 163.0 25.5 181 613-796 233-435 (706)
154 3fvz_A Peptidyl-glycine alpha- 99.5 6.4E-12 2.2E-16 137.0 33.7 265 554-845 24-321 (329)
155 3o4h_A Acylamino-acid-releasin 99.5 9.5E-14 3.3E-18 163.6 20.4 263 555-844 23-313 (582)
156 1jmx_B Amine dehydrogenase; ox 99.5 4.8E-13 1.7E-17 145.2 24.5 221 560-796 6-325 (349)
157 3scy_A Hypothetical bacterial 99.5 3.2E-12 1.1E-16 140.6 29.4 223 613-844 73-335 (361)
158 1z68_A Fibroblast activation p 99.5 1.6E-13 5.5E-18 165.7 17.9 230 556-795 62-390 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.5 3.4E-12 1.2E-16 141.2 27.0 241 555-795 41-340 (365)
160 1k32_A Tricorn protease; prote 99.5 8.8E-13 3E-17 166.4 23.0 226 556-793 247-499 (1045)
161 1z68_A Fibroblast activation p 99.5 1.1E-13 3.6E-18 167.3 13.2 197 557-762 19-298 (719)
162 3o4h_A Acylamino-acid-releasin 99.5 2.7E-13 9.4E-18 159.6 16.4 167 613-794 130-313 (582)
163 1jof_A Carboxy-CIS,CIS-muconat 99.5 8.7E-12 3E-16 137.9 26.1 222 616-845 61-340 (365)
164 3pe7_A Oligogalacturonate lyas 99.4 8.5E-12 2.9E-16 138.1 24.1 191 559-760 41-278 (388)
165 1q7f_A NHL, brain tumor CG1071 99.4 1.3E-10 4.6E-15 123.1 28.8 231 555-795 31-279 (286)
166 1q7f_A NHL, brain tumor CG1071 99.4 1.5E-10 5.2E-15 122.6 27.2 219 613-845 49-279 (286)
167 3azo_A Aminopeptidase; POP fam 99.4 3.4E-11 1.2E-15 143.7 24.6 154 637-793 128-320 (662)
168 4a5s_A Dipeptidyl peptidase 4 99.4 1.4E-11 4.6E-16 149.7 21.4 196 556-757 19-296 (740)
169 3azo_A Aminopeptidase; POP fam 99.3 6.2E-11 2.1E-15 141.5 25.3 161 615-783 161-353 (662)
170 3dsm_A Uncharacterized protein 99.3 3.6E-10 1.2E-14 123.2 25.5 216 613-844 62-300 (328)
171 2xdw_A Prolyl endopeptidase; a 99.3 3.1E-10 1.1E-14 137.0 27.5 175 615-794 151-366 (710)
172 3c5m_A Oligogalacturonate lyas 99.3 1.2E-10 4E-15 128.8 20.1 195 557-762 39-280 (396)
173 2gop_A Trilobed protease; beta 99.3 2.9E-10 9.9E-15 123.7 22.5 201 614-844 42-289 (347)
174 4a5s_A Dipeptidyl peptidase 4 99.3 1.2E-10 4.2E-15 141.3 21.6 124 614-742 35-189 (740)
175 3e5z_A Putative gluconolactona 99.3 3.2E-10 1.1E-14 121.0 22.3 209 614-841 49-282 (296)
176 2dg1_A DRP35, lactonase; beta 99.3 1.2E-09 4.2E-14 118.2 26.6 179 612-795 63-262 (333)
177 2oiz_A Aromatic amine dehydrog 99.3 2.2E-10 7.5E-15 126.7 21.0 176 612-795 28-229 (361)
178 2gop_A Trilobed protease; beta 99.2 3.7E-10 1.3E-14 122.8 22.4 201 616-844 86-329 (347)
179 3pe7_A Oligogalacturonate lyas 99.2 3.5E-10 1.2E-14 125.0 21.4 165 629-795 21-224 (388)
180 2bkl_A Prolyl endopeptidase; m 99.2 4E-10 1.4E-14 135.8 23.4 175 612-793 144-346 (695)
181 3no2_A Uncharacterized protein 99.2 2.1E-09 7.1E-14 114.3 25.8 175 611-795 11-194 (276)
182 1qks_A Cytochrome CD1 nitrite 99.2 5E-09 1.7E-13 122.7 31.1 177 613-796 175-421 (567)
183 1rwi_B Serine/threonine-protei 99.2 1.2E-09 4E-14 114.4 22.0 197 637-845 65-263 (270)
184 2bkl_A Prolyl endopeptidase; m 99.2 5.4E-10 1.8E-14 134.6 22.0 198 636-844 118-347 (695)
185 1rwi_B Serine/threonine-protei 99.2 2.7E-09 9.4E-14 111.5 24.4 176 614-795 86-263 (270)
186 3fvz_A Peptidyl-glycine alpha- 99.2 6.3E-09 2.1E-13 113.2 27.4 157 638-795 23-226 (329)
187 1xip_A Nucleoporin NUP159; bet 99.2 2.1E-09 7.2E-14 119.3 23.7 131 637-781 87-228 (388)
188 2dg1_A DRP35, lactonase; beta 99.2 9.4E-09 3.2E-13 111.2 28.5 220 614-844 26-261 (333)
189 2xdw_A Prolyl endopeptidase; a 99.2 1.7E-09 5.8E-14 130.5 24.8 203 636-843 122-363 (710)
190 3e5z_A Putative gluconolactona 99.2 2.7E-09 9.2E-14 113.8 22.7 218 555-787 29-278 (296)
191 2z2n_A Virginiamycin B lyase; 99.1 7.6E-08 2.6E-12 101.5 33.7 227 555-794 16-253 (299)
192 2oiz_A Aromatic amine dehydrog 99.1 2E-09 6.7E-14 119.1 21.8 84 686-774 259-355 (361)
193 3c5m_A Oligogalacturonate lyas 99.1 6.1E-10 2.1E-14 123.0 17.0 177 614-796 59-273 (396)
194 1yr2_A Prolyl oligopeptidase; 99.1 5.6E-09 1.9E-13 126.7 23.6 173 615-793 189-390 (741)
195 3dsm_A Uncharacterized protein 99.0 3.2E-08 1.1E-12 107.6 25.8 218 610-846 12-253 (328)
196 2z2n_A Virginiamycin B lyase; 99.0 2.1E-07 7.4E-12 98.0 29.8 225 555-794 58-293 (299)
197 2qc5_A Streptogramin B lactona 99.0 8.4E-07 2.9E-11 93.5 33.6 227 555-794 21-258 (300)
198 1yr2_A Prolyl oligopeptidase; 99.0 1.6E-08 5.6E-13 122.5 22.7 198 637-844 161-391 (741)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 8.2E-08 2.8E-12 102.4 24.8 218 614-845 45-298 (314)
200 3no2_A Uncharacterized protein 99.0 6.5E-08 2.2E-12 102.7 23.5 177 575-764 18-204 (276)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.5E-08 1.5E-12 104.5 22.5 234 556-795 20-298 (314)
202 1qks_A Cytochrome CD1 nitrite 99.0 5.2E-08 1.8E-12 114.0 24.8 189 648-846 165-373 (567)
203 3iuj_A Prolyl endopeptidase; h 98.9 5.3E-08 1.8E-12 117.1 24.9 175 615-795 155-358 (693)
204 3hrp_A Uncharacterized protein 98.9 3.2E-07 1.1E-11 103.0 29.1 224 612-844 149-408 (409)
205 2mad_H Methylamine dehydrogena 98.9 3.7E-07 1.3E-11 101.3 28.8 168 616-795 48-242 (373)
206 3sjl_D Methylamine dehydrogena 98.9 9.6E-08 3.3E-12 105.6 23.4 194 644-845 38-255 (386)
207 3g4e_A Regucalcin; six bladed 98.9 1.9E-07 6.4E-12 99.8 23.2 170 614-785 72-261 (297)
208 2qc5_A Streptogramin B lactona 98.9 1.3E-06 4.4E-11 92.0 29.4 216 613-844 39-258 (300)
209 1xip_A Nucleoporin NUP159; bet 98.9 3.3E-08 1.1E-12 109.7 16.9 141 640-795 39-190 (388)
210 3g4e_A Regucalcin; six bladed 98.8 7.7E-07 2.6E-11 95.0 26.5 175 613-795 33-228 (297)
211 2ghs_A AGR_C_1268P; regucalcin 98.8 1.6E-06 5.3E-11 94.1 27.4 170 614-794 70-258 (326)
212 3hrp_A Uncharacterized protein 98.8 1.4E-06 4.8E-11 97.8 26.9 201 639-844 131-352 (409)
213 3sjl_D Methylamine dehydrogena 98.8 3.4E-07 1.2E-11 101.2 21.0 172 614-795 58-255 (386)
214 2ghs_A AGR_C_1268P; regucalcin 98.8 1.5E-06 5.3E-11 94.1 25.6 164 616-786 110-292 (326)
215 3c75_H MADH, methylamine dehyd 98.7 2.7E-07 9.2E-12 103.7 20.0 171 615-795 99-294 (426)
216 3iuj_A Prolyl endopeptidase; h 98.7 2.2E-07 7.5E-12 111.8 19.6 158 636-795 126-313 (693)
217 3dr2_A Exported gluconolactona 98.7 7.4E-07 2.5E-11 95.5 21.7 208 614-841 66-302 (305)
218 2qe8_A Uncharacterized protein 98.7 7.7E-07 2.6E-11 97.2 22.1 224 555-783 18-307 (343)
219 2hz6_A Endoplasmic reticulum t 98.7 4.7E-09 1.6E-13 116.4 3.2 183 649-846 8-192 (369)
220 2mad_H Methylamine dehydrogena 98.7 2.6E-06 8.8E-11 94.4 24.9 143 646-794 28-194 (373)
221 1mda_H Methylamine dehydrogena 98.6 8.1E-07 2.8E-11 98.0 18.5 91 616-711 47-158 (368)
222 2hz6_A Endoplasmic reticulum t 98.6 4.1E-09 1.4E-13 116.8 -1.4 170 612-795 16-191 (369)
223 3hxj_A Pyrrolo-quinoline quino 98.6 2.4E-06 8.1E-11 91.7 20.4 210 611-844 113-322 (330)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.6 5.2E-05 1.8E-09 83.2 31.5 213 611-846 109-337 (376)
225 3c75_H MADH, methylamine dehyd 98.6 4.4E-06 1.5E-10 93.8 22.6 142 648-794 82-246 (426)
226 1yiq_A Quinohemoprotein alcoho 98.5 1.8E-05 6E-10 95.0 28.2 154 643-797 239-506 (689)
227 1kb0_A Quinohemoprotein alcoho 98.5 1.7E-05 5.8E-10 94.9 28.0 154 643-797 247-508 (677)
228 3hxj_A Pyrrolo-quinoline quino 98.5 3.4E-06 1.2E-10 90.4 19.0 176 650-844 107-282 (330)
229 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.1E-05 3.7E-10 88.8 23.3 212 613-846 61-296 (376)
230 2qe8_A Uncharacterized protein 98.5 6.8E-06 2.3E-10 89.6 21.1 131 628-763 9-162 (343)
231 2iwa_A Glutamine cyclotransfer 98.5 3.4E-05 1.2E-09 80.8 24.9 211 627-845 8-236 (266)
232 1yiq_A Quinohemoprotein alcoho 98.4 1.2E-05 4.2E-10 96.3 23.3 149 611-763 127-346 (689)
233 3dr2_A Exported gluconolactona 98.4 1E-05 3.6E-10 86.4 20.4 154 634-795 40-223 (305)
234 1npe_A Nidogen, entactin; glyc 98.4 0.0001 3.5E-09 76.9 27.5 177 613-795 56-237 (267)
235 2iwa_A Glutamine cyclotransfer 98.4 9.5E-06 3.3E-10 85.0 18.2 189 556-756 23-238 (266)
236 1npe_A Nidogen, entactin; glyc 98.4 0.00015 5E-09 75.7 27.3 195 639-845 36-237 (267)
237 2ece_A 462AA long hypothetical 98.4 6.1E-05 2.1E-09 84.0 25.0 145 611-757 102-291 (462)
238 2ece_A 462AA long hypothetical 98.3 6.2E-05 2.1E-09 83.9 24.6 151 610-764 159-364 (462)
239 1kv9_A Type II quinohemoprotei 98.3 6.5E-05 2.2E-09 89.7 26.7 154 643-797 234-489 (668)
240 3nol_A Glutamine cyclotransfer 98.3 3.8E-05 1.3E-09 79.6 21.3 160 629-797 32-202 (262)
241 1kb0_A Quinohemoprotein alcoho 98.3 2.2E-05 7.5E-10 94.0 22.4 148 612-764 135-355 (677)
242 2fp8_A Strictosidine synthase; 98.3 0.00018 6.2E-09 77.3 27.3 197 639-845 80-312 (322)
243 4a2l_A BT_4663, two-component 98.3 0.00033 1.1E-08 85.3 31.1 174 611-795 373-570 (795)
244 3nok_A Glutaminyl cyclase; bet 98.3 5.4E-05 1.8E-09 78.6 20.0 184 641-834 57-254 (268)
245 3mbr_X Glutamine cyclotransfer 98.2 0.00019 6.4E-09 73.8 23.3 159 629-797 10-180 (243)
246 4a2l_A BT_4663, two-component 98.2 0.00057 2E-08 83.2 31.3 176 611-794 326-524 (795)
247 1ijq_A LDL receptor, low-densi 98.2 0.0012 4.3E-08 70.8 29.4 217 615-844 10-236 (316)
248 3v65_B Low-density lipoprotein 98.1 0.00065 2.2E-08 75.3 25.6 215 615-843 96-315 (386)
249 3v9f_A Two-component system se 98.1 0.00087 3E-08 81.4 28.5 176 612-795 330-523 (781)
250 3v65_B Low-density lipoprotein 98.1 0.0012 3.9E-08 73.3 27.1 177 613-793 136-315 (386)
251 3p5b_L Low density lipoprotein 98.0 0.0021 7.2E-08 71.5 28.7 217 615-843 92-317 (400)
252 3v64_C Agrin; beta propeller, 98.0 0.0022 7.6E-08 69.9 28.3 176 613-793 93-272 (349)
253 3v64_C Agrin; beta propeller, 98.0 0.0012 4.3E-08 71.9 26.2 176 616-796 54-234 (349)
254 1ijq_A LDL receptor, low-densi 98.0 0.0061 2.1E-07 65.3 30.2 180 613-794 50-236 (316)
255 3v9f_A Two-component system se 97.9 0.0023 7.8E-08 77.7 29.3 174 614-795 382-567 (781)
256 2xe4_A Oligopeptidase B; hydro 97.9 0.00012 4.1E-09 88.7 17.5 114 640-756 175-305 (751)
257 2xe4_A Oligopeptidase B; hydro 97.9 0.0016 5.3E-08 78.9 27.3 196 555-753 175-398 (751)
258 1fwx_A Nitrous oxide reductase 97.9 0.00022 7.6E-09 82.2 18.6 179 611-795 108-360 (595)
259 1kv9_A Type II quinohemoprotei 97.9 0.00094 3.2E-08 79.6 24.6 146 612-763 124-341 (668)
260 2ad6_A Methanol dehydrogenase 97.9 0.0014 4.7E-08 76.6 25.2 151 644-796 240-494 (571)
261 3m0c_C LDL receptor, low-densi 97.9 0.0039 1.3E-07 75.4 29.6 177 615-796 404-589 (791)
262 3tc9_A Hypothetical hydrolase; 97.9 0.0023 7.9E-08 71.9 25.6 134 615-755 159-301 (430)
263 1fwx_A Nitrous oxide reductase 97.9 0.0012 3.9E-08 76.3 23.1 194 649-845 100-360 (595)
264 3nol_A Glutamine cyclotransfer 97.9 0.00054 1.8E-08 71.0 18.5 141 615-765 65-211 (262)
265 1mda_H Methylamine dehydrogena 97.8 5.3E-05 1.8E-09 83.4 10.7 92 661-755 47-158 (368)
266 3sov_A LRP-6, low-density lipo 97.8 0.004 1.4E-07 66.9 25.1 179 613-795 55-237 (318)
267 3nok_A Glutaminyl cyclase; bet 97.8 0.0005 1.7E-08 71.3 17.0 144 612-765 72-220 (268)
268 2fp8_A Strictosidine synthase; 97.8 0.0019 6.4E-08 69.2 22.5 173 616-794 102-311 (322)
269 3p5b_L Low density lipoprotein 97.8 0.0057 1.9E-07 68.0 26.5 181 613-794 132-318 (400)
270 4hw6_A Hypothetical protein, I 97.8 0.0073 2.5E-07 67.9 27.4 134 615-754 162-303 (433)
271 3amr_A 3-phytase; beta-propell 97.7 0.0019 6.6E-08 69.7 20.7 144 649-795 39-209 (355)
272 1w6s_A Methanol dehydrogenase 97.7 0.0097 3.3E-07 69.7 28.4 153 643-797 245-504 (599)
273 3mbr_X Glutamine cyclotransfer 97.7 0.0028 9.5E-08 65.0 20.5 141 614-764 42-188 (243)
274 3sov_A LRP-6, low-density lipo 97.7 0.0059 2E-07 65.6 24.0 217 615-844 13-236 (318)
275 2xbg_A YCF48-like protein; pho 97.7 0.024 8.2E-07 60.9 29.0 206 625-843 108-319 (327)
276 3m0c_C LDL receptor, low-densi 97.7 0.011 3.8E-07 71.4 28.1 180 614-794 445-630 (791)
277 2p4o_A Hypothetical protein; p 97.6 0.012 4.2E-07 62.3 25.6 162 629-795 23-197 (306)
278 1k3i_A Galactose oxidase precu 97.6 0.00072 2.5E-08 80.5 17.2 144 614-761 264-447 (656)
279 2ad6_A Methanol dehydrogenase 97.6 0.0072 2.5E-07 70.5 24.7 149 612-764 122-344 (571)
280 3qqz_A Putative uncharacterize 97.5 0.06 2.1E-06 55.7 28.3 119 633-752 21-150 (255)
281 1flg_A Protein (quinoprotein e 97.5 0.023 8E-07 66.3 27.2 153 643-797 250-517 (582)
282 1n7d_A LDL receptor, low-densi 97.5 0.00069 2.4E-08 81.2 13.9 218 615-844 386-612 (699)
283 1w6s_A Methanol dehydrogenase 97.4 0.0082 2.8E-07 70.3 21.8 148 612-763 128-350 (599)
284 1n7d_A LDL receptor, low-densi 97.4 0.0011 3.7E-08 79.5 14.6 182 612-795 425-613 (699)
285 4a0p_A LRP6, LRP-6, low-densit 97.4 0.056 1.9E-06 63.7 28.5 177 613-795 57-236 (628)
286 3qqz_A Putative uncharacterize 97.3 0.031 1.1E-06 57.8 22.2 154 639-793 70-250 (255)
287 1k3i_A Galactose oxidase precu 97.3 0.0034 1.2E-07 74.5 17.0 95 616-711 220-323 (656)
288 3s94_A LRP-6, low-density lipo 97.2 0.067 2.3E-06 62.9 26.9 179 614-795 17-201 (619)
289 1flg_A Protein (quinoprotein e 97.2 0.011 3.7E-07 69.1 19.9 146 615-767 291-528 (582)
290 4hw6_A Hypothetical protein, I 97.2 0.054 1.8E-06 60.7 24.4 152 639-794 139-302 (433)
291 3kya_A Putative phosphatase; s 97.2 0.094 3.2E-06 59.5 26.2 137 615-754 162-340 (496)
292 4a0p_A LRP6, LRP-6, low-densit 97.1 0.14 4.8E-06 60.2 28.1 179 614-796 14-197 (628)
293 3s94_A LRP-6, low-density lipo 97.1 0.16 5.4E-06 59.7 28.3 180 615-796 326-510 (619)
294 2p4o_A Hypothetical protein; p 97.1 0.045 1.5E-06 57.9 21.3 154 639-795 72-241 (306)
295 3tc9_A Hypothetical hydrolase; 97.0 0.018 6.2E-07 64.6 18.1 153 640-794 138-299 (430)
296 2xzh_A Clathrin heavy chain 1; 96.9 0.17 5.8E-06 53.7 23.5 211 572-793 87-329 (365)
297 2p9w_A MAL S 1 allergenic prot 96.9 0.054 1.8E-06 57.9 19.6 139 613-756 33-216 (334)
298 1bpo_A Protein (clathrin); cla 96.8 0.35 1.2E-05 53.3 25.0 211 572-793 86-328 (494)
299 3kya_A Putative phosphatase; s 96.7 0.075 2.6E-06 60.3 20.5 153 640-793 140-338 (496)
300 3amr_A 3-phytase; beta-propell 96.7 0.049 1.7E-06 58.7 17.7 150 614-765 98-274 (355)
301 3ii7_A Kelch-like protein 7; p 96.7 0.058 2E-06 56.8 18.4 137 614-759 23-182 (306)
302 2xbg_A YCF48-like protein; pho 96.6 0.1 3.4E-06 56.0 20.1 160 625-794 151-320 (327)
303 2vpj_A Kelch-like protein 12; 96.6 0.076 2.6E-06 55.7 18.6 138 615-760 31-189 (301)
304 2xn4_A Kelch-like protein 2; s 96.5 0.097 3.3E-06 55.0 18.8 136 616-760 31-187 (302)
305 2xzh_A Clathrin heavy chain 1; 96.5 1.1 3.8E-05 47.6 27.9 230 598-846 36-290 (365)
306 2p9w_A MAL S 1 allergenic prot 96.5 0.23 7.9E-06 53.0 21.1 158 635-795 9-214 (334)
307 3pbp_A Nucleoporin NUP82; beta 96.3 0.11 3.6E-06 57.3 17.4 110 640-751 67-208 (452)
308 1bpo_A Protein (clathrin); cla 96.3 1.8 6.2E-05 47.7 28.9 230 598-846 35-289 (494)
309 3ott_A Two-component system se 96.2 0.68 2.3E-05 55.5 26.3 168 616-792 122-303 (758)
310 3sre_A PON1, serum paraoxonase 96.2 0.73 2.5E-05 49.9 23.6 148 613-763 137-308 (355)
311 3pbp_A Nucleoporin NUP82; beta 96.2 0.28 9.4E-06 54.1 19.9 144 647-793 29-209 (452)
312 3sre_A PON1, serum paraoxonase 96.1 0.24 8.2E-06 53.7 19.2 166 613-784 81-284 (355)
313 3ott_A Two-component system se 96.1 1.7 5.8E-05 52.0 28.7 167 615-795 82-259 (758)
314 4asc_A Kelch repeat and BTB do 96.0 0.15 5.2E-06 53.9 16.8 136 615-758 13-177 (315)
315 1zgk_A Kelch-like ECH-associat 95.7 0.2 7E-06 52.7 16.3 135 615-759 39-197 (308)
316 2ism_A Putative oxidoreductase 95.7 0.15 5.3E-06 55.2 15.4 101 638-742 30-152 (352)
317 2woz_A Kelch repeat and BTB do 95.6 0.6 2.1E-05 49.2 19.5 135 617-759 26-188 (318)
318 2ism_A Putative oxidoreductase 95.5 1 3.6E-05 48.5 21.4 29 555-583 32-60 (352)
319 3a9g_A Putative uncharacterize 95.4 2 6.9E-05 46.3 23.3 102 639-742 73-215 (354)
320 1cru_A Protein (soluble quinop 95.4 0.76 2.6E-05 51.6 20.4 105 638-743 26-162 (454)
321 3ei3_A DNA damage-binding prot 95.3 1.4 4.9E-05 55.4 24.2 169 615-793 807-996 (1158)
322 2vpj_A Kelch-like protein 12; 95.3 0.66 2.2E-05 48.4 18.3 136 614-758 127-281 (301)
323 3a9g_A Putative uncharacterize 95.3 0.33 1.1E-05 52.6 16.3 102 638-742 28-152 (354)
324 2g8s_A Glucose/sorbosone dehyd 95.3 0.35 1.2E-05 52.3 16.5 146 639-786 18-217 (353)
325 1tl2_A L10, protein (tachylect 95.1 0.26 8.7E-06 49.5 13.4 142 640-790 42-204 (236)
326 3ei3_A DNA damage-binding prot 95.0 4.6 0.00016 50.8 27.8 136 615-757 492-640 (1158)
327 3das_A Putative oxidoreductase 95.0 0.9 3.1E-05 49.0 18.6 112 631-743 24-158 (347)
328 3s25_A Hypothetical 7-bladed b 95.0 1.1 3.9E-05 47.2 19.2 138 643-793 57-213 (302)
329 2xn4_A Kelch-like protein 2; s 94.8 0.57 2E-05 48.9 16.1 136 615-759 77-233 (302)
330 3das_A Putative oxidoreductase 94.6 5.9 0.0002 42.5 26.3 26 555-580 33-59 (347)
331 3s25_A Hypothetical 7-bladed b 94.6 2.3 7.7E-05 44.9 20.2 134 644-790 150-287 (302)
332 2be1_A Serine/threonine-protei 94.4 0.12 4.1E-06 55.7 9.8 114 651-765 11-140 (339)
333 3ii7_A Kelch-like protein 7; p 94.3 0.62 2.1E-05 48.7 15.0 136 614-758 69-228 (306)
334 4asc_A Kelch repeat and BTB do 94.0 0.67 2.3E-05 48.8 14.6 136 616-760 68-226 (315)
335 1zgk_A Kelch-like ECH-associat 93.8 0.63 2.2E-05 48.9 13.8 136 615-759 90-244 (308)
336 1xi4_A Clathrin heavy chain; a 93.6 0.8 2.7E-05 57.7 15.7 211 572-793 86-328 (1630)
337 3iot_A Maltose-binding protein 93.6 0.12 4.1E-06 58.0 8.1 28 53-80 337-365 (449)
338 2zwa_A Leucine carboxyl methyl 93.1 1.8 6E-05 51.5 17.7 138 616-757 413-579 (695)
339 2be1_A Serine/threonine-protei 92.9 0.67 2.3E-05 49.8 12.2 69 651-720 57-138 (339)
340 1tl2_A L10, protein (tachylect 92.8 0.55 1.9E-05 47.1 10.5 134 649-791 3-158 (236)
341 2g8s_A Glucose/sorbosone dehyd 92.6 13 0.00044 39.8 22.4 24 556-579 20-44 (353)
342 2uvk_A YJHT; unknown function, 92.1 1.9 6.4E-05 46.1 14.8 81 617-701 33-128 (357)
343 2woz_A Kelch repeat and BTB do 92.0 1.2 4.2E-05 46.8 13.0 134 617-759 80-235 (318)
344 2uvk_A YJHT; unknown function, 91.6 1.6 5.5E-05 46.6 13.6 42 615-659 86-128 (357)
345 1xi4_A Clathrin heavy chain; a 91.1 4.4 0.00015 51.2 17.7 133 614-756 47-189 (1630)
346 1cru_A Protein (soluble quinop 91.0 5.7 0.0002 44.4 17.7 116 638-756 76-260 (454)
347 3b7f_A Glycosyl hydrolase, BNR 90.8 20 0.0007 38.5 22.5 145 638-787 54-254 (394)
348 3b7f_A Glycosyl hydrolase, BNR 89.6 25 0.00086 37.8 21.6 141 639-784 115-297 (394)
349 1suu_A DNA gyrase subunit A; t 88.6 26 0.0009 36.7 21.2 196 648-847 6-232 (312)
350 2zwa_A Leucine carboxyl methyl 87.8 5.6 0.00019 47.1 15.2 143 614-759 467-639 (695)
351 3sbq_A Nitrous-oxide reductase 87.7 4.6 0.00016 45.9 13.2 73 682-755 324-408 (638)
352 4hvt_A Ritya.17583.B, post-pro 87.0 49 0.0017 39.0 22.6 194 558-757 134-383 (711)
353 3sbq_A Nitrous-oxide reductase 84.9 6.8 0.00023 44.6 12.7 140 616-757 299-480 (638)
354 3uc1_A DNA gyrase subunit A; D 83.4 46 0.0016 35.1 18.2 143 649-794 108-277 (327)
355 1zi0_A DNA gyrase subunit A; b 83.3 47 0.0016 34.7 19.6 196 648-847 1-227 (307)
356 3l6v_A GYRA, DNA gyrase subuni 83.3 42 0.0014 36.2 18.0 146 647-794 4-178 (370)
357 3qhy_B Beta-lactamase inhibito 83.2 16 0.00054 37.8 14.2 143 640-795 64-206 (282)
358 1wp5_A Topoisomerase IV; broke 81.5 39 0.0013 35.6 16.7 196 648-846 3-225 (323)
359 2wg3_C Hedgehog-interacting pr 80.9 17 0.00059 40.6 14.3 104 639-743 14-157 (463)
360 4gq2_M Nucleoporin NUP120; bet 80.1 9 0.00031 47.1 12.6 39 639-677 236-274 (950)
361 4gq2_M Nucleoporin NUP120; bet 77.1 29 0.001 42.5 15.9 37 682-719 237-273 (950)
362 3f7f_A Nucleoporin NUP120; nuc 77.0 16 0.00053 43.0 12.5 38 639-678 222-259 (729)
363 3no0_A DNA gyrase subunit A; D 75.8 75 0.0026 32.5 18.7 154 638-794 67-244 (276)
364 3q6k_A 43.2 kDa salivary prote 75.5 94 0.0032 33.5 25.3 168 616-785 124-342 (381)
365 3qhy_B Beta-lactamase inhibito 75.4 41 0.0014 34.5 14.4 105 640-755 25-129 (282)
366 3uc1_A DNA gyrase subunit A; D 75.0 69 0.0024 33.7 16.3 196 650-846 3-228 (327)
367 2xtc_A F-box-like/WD repeat-co 68.3 2.9 0.0001 35.2 2.7 32 11-42 7-38 (90)
368 4hvt_A Ritya.17583.B, post-pro 68.3 78 0.0027 37.3 16.2 114 641-755 131-278 (711)
369 3f7f_A Nucleoporin NUP120; nuc 68.3 1.9E+02 0.0064 33.9 20.5 37 725-764 223-259 (729)
370 3kci_A Probable E3 ubiquitin-p 65.5 1.5E+02 0.005 31.7 18.7 141 651-794 63-239 (389)
371 1uuj_A Platelet-activating fac 65.5 2.4 8.2E-05 35.5 1.6 32 10-41 11-42 (88)
372 1suu_A DNA gyrase subunit A; t 65.4 1.3E+02 0.0046 31.2 19.9 153 639-794 47-229 (312)
373 1sqj_A OXG-RCBH, oligoxylogluc 63.0 55 0.0019 39.1 13.7 107 638-745 14-142 (789)
374 3no0_A DNA gyrase subunit A; D 62.3 1.4E+02 0.0048 30.4 20.8 151 639-793 24-193 (276)
375 2cn3_A Xyloglucanase, beta-1,4 59.0 98 0.0034 36.5 14.9 104 639-743 23-151 (737)
376 3q6k_A 43.2 kDa salivary prote 58.2 2E+02 0.0069 30.9 19.0 122 613-736 179-336 (381)
377 4fhn_B Nucleoporin NUP120; pro 56.0 73 0.0025 39.8 13.6 38 725-763 239-276 (1139)
378 2zux_A YESW protein; beta-prop 55.6 2.7E+02 0.0093 31.6 22.7 94 661-765 293-410 (591)
379 3mvd_K Regulator of chromosome 53.8 2.4E+02 0.0081 30.3 24.9 149 639-794 127-320 (423)
380 1zvt_A Topoisomerase IV subuni 53.5 1E+02 0.0034 31.2 11.8 142 651-795 3-162 (256)
381 2zux_A YESW protein; beta-prop 52.3 3E+02 0.01 31.2 17.8 114 615-736 292-426 (591)
382 2wg3_C Hedgehog-interacting pr 50.7 2E+02 0.007 31.7 14.8 63 681-743 14-91 (463)
383 3zwu_A Alkaline phosphatase PH 47.6 47 0.0016 38.2 9.0 58 641-698 478-548 (592)
384 4a9v_A PHOX; hydrolase, beta-p 44.2 72 0.0024 36.4 9.6 61 639-699 476-549 (592)
385 2zuy_A YESX protein; beta-prop 42.4 4.3E+02 0.015 30.1 17.8 157 636-795 365-552 (620)
386 4fhn_B Nucleoporin NUP120; pro 40.5 17 0.00059 45.5 4.3 39 639-677 238-276 (1139)
387 4d9s_A UVB-resistance protein 38.9 3.9E+02 0.013 28.5 20.9 148 639-794 121-303 (406)
388 4d9s_A UVB-resistance protein 38.2 4E+02 0.014 28.4 21.9 107 682-794 122-251 (406)
389 3a0f_A Xyloglucanase; beta-pro 37.1 2.4E+02 0.0084 33.2 13.5 109 637-746 19-155 (763)
390 3zwu_A Alkaline phosphatase PH 36.8 83 0.0028 36.1 8.8 59 683-742 478-549 (592)
391 3elq_A Arylsulfate sulfotransf 36.3 5.2E+02 0.018 29.3 15.2 39 726-766 357-395 (571)
392 1a12_A RCC1, regulator of chro 33.9 4.6E+02 0.016 27.9 20.7 147 639-794 111-312 (413)
393 3hx6_A Type 4 fimbrial biogene 32.7 5.9E+02 0.02 28.8 18.1 145 650-795 85-283 (570)
394 3mvd_K Regulator of chromosome 32.5 4.8E+02 0.017 27.7 27.0 106 640-753 76-205 (423)
395 4a9v_A PHOX; hydrolase, beta-p 31.6 1.8E+02 0.0062 33.1 10.3 64 682-746 477-553 (592)
396 1wp5_A Topoisomerase IV; broke 31.1 4.7E+02 0.016 27.1 20.8 152 639-793 39-222 (323)
397 3kci_A Probable E3 ubiquitin-p 30.6 5E+02 0.017 27.3 26.4 152 639-794 105-291 (389)
398 1zi0_A DNA gyrase subunit A; b 27.3 5.2E+02 0.018 26.5 21.1 152 639-793 42-223 (307)
399 1qb3_A Cyclin-dependent kinase 27.3 14 0.00047 33.7 0.1 11 317-327 70-80 (150)
400 2zuy_A YESX protein; beta-prop 26.6 7.6E+02 0.026 28.1 25.5 64 721-784 365-438 (620)
401 3of7_A Regulator of chromosome 21.3 8.1E+02 0.028 26.5 21.2 107 681-793 148-282 (473)
402 1sqj_A OXG-RCBH, oligoxylogluc 20.1 1.1E+03 0.037 27.6 19.6 62 680-743 14-83 (789)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=307.54 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=215.7
Q ss_pred CCcceEEEecCCCeEeecCC--CeEEeCCCCchh-----hccccccccCCCCCce-EEeeecCC---CCCCCCcEEEEec
Q 003106 554 TSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELR-----ADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGGRGMDV 622 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~-----~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v~vwd~ 622 (847)
..+.++.|+|||+.+++++. .++||.....+. ............+..| .+.+.+++ +++.|++|++||+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 34678999999998887654 378874321111 1111111111112223 23344554 6788999999999
Q ss_pred cCCceeeE-eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeC
Q 003106 623 SQGFSFKE-ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF 700 (847)
Q Consensus 623 ~~~~~~~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~ 700 (847)
.++..... ...+.+|.+.|++|+|+|||++|++|+.|++|+|||+++++++.++.+|...|++++|++++. +|++|+.
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~ 190 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE 190 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecc
Confidence 98754433 345679999999999999999999999999999999999999999999999999999999985 7899999
Q ss_pred CCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 701 DKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
|++|+|||+++ +..+..+. .|...+++++|+|++..+|++|+.||+|+|||+++++++..+.+|...|.++.+...
T Consensus 191 D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 191 DNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS 269 (344)
T ss_dssp TSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSS
T ss_pred ccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 99999999998 66666653 456679999999988888999999999999999999999999999999999998753
Q ss_pred -CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 778 -PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 778 -~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.+++.++.|++||.... .++...+ +... ++++.+.+.+..+|++|+.||+|++|++.+
T Consensus 270 ~~~lasgs~D~~i~vwd~~~~--~~~~~~~--H~~~----V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 270 VPFLASLSEDCSLAVLDSSLS--ELFRSQA--HRDF----VRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SCCEEEEETTSCEEEECTTCC--EEEEECC--CSSC----EEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CeEEEEEeCCCeEEEEECCCC--cEEEEcC--CCCC----EEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 46888999999999997643 2222222 2233 444555565667899999999999999854
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-31 Score=300.39 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=226.0
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..++|+|++..+++++.+ +|||+.+++....+.. +...|. +.+.+++ +++.|++|++||+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~------h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG------HTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC------CSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45578899999999999887654 8999998876554321 223333 3344444 68899999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +.+.++.+|...|.+++|+|++++|++|+.|++|++||+.++.++.++.+|...|.+++|++++.+|++|+.|++
T Consensus 181 ~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp SS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 65 577788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCC-------------------CeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-------------------DDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-------------------~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|+|||+++ +.+...+.+|...|.+++|+|++ ..+|++|+.|++|++||++++.++..+.+
T Consensus 258 v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 258 VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 99999998 77888999999999999999973 23678999999999999999999999999
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|...|.++.+.. ...+++++.++.|++||....... .... .+... ++.+.+.+ ++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~--~~~~-~h~~~----v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--KTLN-AHEHF----VTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC--EEEE-CCSSC----EEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--EEEc-CCCCc----EEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 999999998764 457889999999999996532211 1111 12223 33444444 577899999999999998
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
.
T Consensus 409 ~ 409 (410)
T 1vyh_C 409 C 409 (410)
T ss_dssp -
T ss_pred C
Confidence 6
No 3
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-31 Score=298.31 Aligned_cols=284 Identities=17% Similarity=0.155 Sum_probs=214.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---------eEEeCCCCchhhccccccccCCCCCce-EEeeecCC---CCCCCCcE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---------QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGG 617 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---------~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v 617 (847)
.|...+.+++|+|||+++++++.+ ++|+..++.....+... ...+...| .+.+.+++ +++.|++|
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~--~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA--GVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE--EEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc--cCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 345568899999999999987652 56666665543332111 11122223 33345555 66779999
Q ss_pred EEEeccCCceee-EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EE
Q 003106 618 RGMDVSQGFSFK-EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RL 695 (847)
Q Consensus 618 ~vwd~~~~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~L 695 (847)
++||+.++.... ......+|.+.|++|+|+||+++|++|+.|++|+|||+.+++.+..+.+|...|++|+|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998873322 2234568999999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCCceEEE--eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN 773 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~ 773 (847)
++++.||+|+|||+++ +..+.. +..|...|++|+|+|++..+|++|+.|+.|++||+++++++..+..+...|.++.
T Consensus 198 ~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 198 LSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEEETTSCEEECCTTS-SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eeeccCCceEEEECCC-CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 9999999999999998 444433 3457788999999999888899999999999999999999999999999999998
Q ss_pred ecCC--CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 774 AMNR--PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 774 ~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+... ..|.+++.++.|++||.... .++...+ +... ++.+.+.+.++.+|++|+.||+|++|++.
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~--~~~~~~~--H~~~----V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFS--EVFRDLS--HRDF----VTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSC--EEEEECC--CSSC----EEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCCC--cEeEECC--CCCC----EEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 8643 46788999999999997643 2333222 2333 34455556678899999999999999974
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.98 E-value=2.5e-30 Score=282.83 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=223.4
Q ss_pred CCCCCCcceEEEecC----CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcE
Q 003106 550 HSGTTSKPLMMFGTD----GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGG 617 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d----G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v 617 (847)
..|...+..++|+++ +..+++++.+ +|||+.+....... ... .+...|.. .+.+++ +++.|++|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~---~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW---SLE-GHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE---EEC-CCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee---eec-cCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 456778899999875 5577776655 89998765432110 111 22233333 334443 67889999
Q ss_pred EEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 618 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
++||+.++ +.+..+..|...|.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++
T Consensus 105 ~lWd~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 105 RLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEETTTT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999987 567778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-
Q 003106 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN- 776 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~- 776 (847)
|+.||+|+|||+++ +..+.++.+|...|++|+|+|++. +|++++.|++|+|||+++++++..+.+|...|.++.+..
T Consensus 182 g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 182 GAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp EETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence 99999999999998 788899999999999999999987 667999999999999999999999999999999998874
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
...+++++.++.|++||...... ...+. .+.. .+|.+.+.+ ++.+|++++.||+|+||+..
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~~~--~~~~~-~h~~----~v~~v~~s~-~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTRTC--VHTFF-DHQD----QVWGVKYNG-NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEE--EEEEC-CCSS----CEEEEEECT-TSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCcEEEEeCCCCEE--EEEEc-CCCC----cEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 45788999999999999753322 11111 1122 344444444 67899999999999999974
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=3.2e-30 Score=284.62 Aligned_cols=284 Identities=18% Similarity=0.239 Sum_probs=215.3
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..++|+|||+++++++.+ +|||+.+...... ......+...|.. .+++++ +++.|+.+++||+..+
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 367899999999999887655 8999987643211 1111223334443 355555 6788999999999876
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.++.+..+.+|...|.+++|+|++++|++|+.|++|+|||++++ .++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 94 -~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 172 (345)
T 3fm0_A 94 -DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172 (345)
T ss_dssp --EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred -CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence 56778889999999999999999999999999999999999865 34667889999999999999999999999999
Q ss_pred cEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC---------------ceEEEEee-C
Q 003106 703 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---------------SCTRVFKV-E 765 (847)
Q Consensus 703 ~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~---------------~~~~~~~~-~ 765 (847)
+|+|||+++.. .++.++.+|...|++|+|+|++. +|++|+.|++|+|||+... +++..+.+ |
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999998732 34578899999999999999987 5669999999999997421 34455554 6
Q ss_pred CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccc---ee---eecccccCCCCccccccccccccCCCcEEEEEeCCCe
Q 003106 766 SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINA---NI---FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS 838 (847)
Q Consensus 766 ~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~---~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~ 838 (847)
...|+++.+.. ...+++++.++.|++|+...... .. .......+...+ +.+.+.+....+|++|+.||+
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V----~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV----NCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE----EEEEECSSSTTEEEEEETTSC
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE----eEeEEeCCCceEEEEcCCCCc
Confidence 77788888764 45688899999999998542211 01 111111123333 444445644579999999999
Q ss_pred EEEEEccC
Q 003106 839 LSSFIAGT 846 (847)
Q Consensus 839 V~vW~~gt 846 (847)
|++|++.+
T Consensus 328 v~~W~~~~ 335 (345)
T 3fm0_A 328 VAFWKYQR 335 (345)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999864
No 6
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=281.36 Aligned_cols=288 Identities=19% Similarity=0.214 Sum_probs=206.4
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..+.|+++ .+++++.+ +|||+..+.... ...+..+.+...|.. .+.+++ +++.|++|++||+.
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL--IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE--EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE--EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 4556788899987 66665444 899998753211 111112224444443 344554 67889999999986
Q ss_pred CC----ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 624 QG----FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 624 ~~----~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.. ...+.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.. .+++..+.+|...|++|+|+|++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 168 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL 168 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence 43 23456778899999999999999999999999999999999942 35677889999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC--------ceEEEEee-
Q 003106 696 ATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG--------SCTRVFKV- 764 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~--------~~~~~~~~- 764 (847)
++|+.|++|+|||+++.. .++..+.+|...|++++|+|++ ..+|++++.|++|+|||++.+ .+...+..
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc
Confidence 999999999999998622 5788899999999999999983 236779999999999999765 44555554
Q ss_pred CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC-CCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC-RECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~l~sGs~DG~V~vW~ 843 (847)
|...|.++.+.....++++..++.|++|+...............+.. ..++.+.+.+. ++.+|++|+.||+|+||+
T Consensus 249 h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 249 HKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred cccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 77889999988778899999999999999543221122111111111 02233333343 467899999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+..
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 865
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=8.1e-30 Score=278.16 Aligned_cols=288 Identities=16% Similarity=0.209 Sum_probs=216.0
Q ss_pred CCCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vw 620 (847)
..|...+..++|++++ ..+++++.+ ++||+...+........... .+...|. +.+.+++ +++.|++|++|
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3566678899999976 677776655 89998653321110000111 1233333 3455555 68899999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC------CCE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------MPR 694 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~------~~~ 694 (847)
|+.++ +.+..+.+|...|.+++|++++++|++|+.|++|+|||++ +..+.++.+|...|.+++|+|. +..
T Consensus 93 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 93 DVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred ECCCC---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 99987 5677889999999999999999999999999999999997 5677888999999999999985 448
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
|++++.|++|++||+++ ......+.+|...|++++|+|++. +|++|+.||+|+|||+++++++..+..+ ..+.++.+
T Consensus 169 l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 245 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF 245 (319)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE
T ss_pred EEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE
Confidence 99999999999999998 777888999999999999999987 5669999999999999999999988765 46788888
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecccccC-CCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYG-SDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....++....+..+++|+...............+ .......++.+.+.+ ++.+|++|+.||+|+||++.|
T Consensus 246 sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEE
T ss_pred cCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEEee
Confidence 77666666666677899885432211111101000 011122233444444 789999999999999999865
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.1e-29 Score=279.47 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=218.9
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+..++|++||+++++++.+ +|||+.++.....+... ......+.+.+++ +++.|+.+++||+.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-----SSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC-----CccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 345578899999999999887665 89999887654432211 1112233344444 67789999999998
Q ss_pred CCc-eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 624 QGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 624 ~~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.. ..+....+.+|.+.|.+++|++++ .|++|+.|++|+|||+.+++.+.++.+|...|++++|+|++++|++|+.|+
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 752 345667789999999999999876 489999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEecC-CCE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMN-RPC 779 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~-~~~ 779 (847)
+|++||+++ +.++.++.+|...|++|+|+|++. +|++|+.||+|+|||+++++.+..+.... ..+.++.+.. ...
T Consensus 207 ~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp CEEEEETTT-CSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred cEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 999999998 788899999999999999999987 56699999999999999998887776443 3577777764 457
Q ss_pred EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 780 LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++..++.|++||........ ...+ +...+. .+.+.+ ++.+|++|+.||+|+||+
T Consensus 285 l~~g~~d~~i~vwd~~~~~~~~-~~~~--h~~~v~----~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKADRAG-VLAG--HDNRVS----CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCCEEE-EEEC--CSSCEE----EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCcEee-Eeec--CCCcEE----EEEEcC-CCCEEEEEcCCccEEecC
Confidence 8899999999999965432211 1111 222333 333334 678899999999999996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=8.2e-30 Score=276.05 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=214.7
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||.++++++.+ +|||+.++.....+.. ....+. +.+.+++ +++.|+.|++||+.
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec------cCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34567899999999999887655 8999998765443221 112222 2334443 67889999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
++ +.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||++++ .....+.+|...|++++|+| ++.+|++|+.|
T Consensus 86 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 86 TG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CC---cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 87 567788999999999999999999999999999999999876 55677899999999999999 57899999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CE
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PC 779 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 779 (847)
++|+|||+++.........+|...|..++|+|.. ..+|++|+.|++|+|||+++++++..+.+|...|.++.+... ..
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 9999999987444444445677889999998742 346779999999999999999999999999999998887654 57
Q ss_pred EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc-EEEEEeCCCeEEEEEcc
Q 003106 780 LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC-CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~l~sGs~DG~V~vW~~g 845 (847)
+++++.++.|++||...... ...+. .....+|.+.+.+.+.. ++++|+.|| +.+|+++
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKV--EKTLN-----VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEEETTSCEEEEETTTCCE--EEEEC-----CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred EEEEcCCCeEEEEECCCCce--eeecc-----CCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 88999999999999654322 22211 11234566666664444 577777665 6666664
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.4e-29 Score=282.70 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=216.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhcccccccc------------CCCCCceE-EeeecCC----CCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVED------------GSLDDNVE-SFLSHDD----TDP 612 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~------------g~~d~~v~-~~~s~d~----t~~ 612 (847)
+...+..++|+|||++++++... ++||+.+++....+...... ...+..|. +.+++++ +++
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 55677899999999999886533 89999988765433211100 00111232 3345555 678
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~ 691 (847)
.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+++++....+. +...|.+++|+| +
T Consensus 143 ~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 143 EDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred CCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 8999999999876 6677889999999999999999999999999999999999999887775 567799999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--------- 755 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--------- 755 (847)
+++|++|+.|++|+|||+++ +..+..+ .+|...|++|+|+|++. +|++|+.|++|++||+++
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccC
Confidence 99999999999999999998 6666655 57999999999999987 556999999999999975
Q ss_pred ---CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-ccCCCcEE
Q 003106 756 ---GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-RSCRECCL 830 (847)
Q Consensus 756 ---~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~l 830 (847)
+.+...+.+|...|.++.+.. ...+++++.++.|++||....... ....+ +...+....|.... ...++.+|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-~~l~~--h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-LMLQG--HRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-EEEEC--CSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEECC--CCCCEEEEEecCCcCcCCCCCEE
Confidence 346677888888898888764 457889999999999996643321 11111 22223333332110 11257899
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||+|+||++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999754
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=5.5e-29 Score=275.95 Aligned_cols=278 Identities=16% Similarity=0.229 Sum_probs=219.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+.+++|+|||+.+++++.+ +|||..++.....+.. .......+.+++++ +++.|+.+++|++.
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-----PCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-----CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 345578899999999999988766 8999988765443221 11122334455555 68889999999986
Q ss_pred CCc---eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC--CCCEEEEE
Q 003106 624 QGF---SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATS 698 (847)
Q Consensus 624 ~~~---~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp--~~~~Lasg 698 (847)
... .......+.+|...|.+++|++++..|++|+.|++|+|||+++++.+.++.+|...|.+++|+| ++++|++|
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 531 2234566788999999999999999999999999999999999999999999999999999988 46899999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEec-
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAM- 775 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~- 775 (847)
+.||+|++||+++ +.++..+.+|...|++++|+|++. +|++|+.|++|++||+++++.+..+..+. ..+.++.+.
T Consensus 217 s~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 217 GCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred eCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence 9999999999998 788999999999999999999987 66799999999999999998887776543 356677665
Q ss_pred CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 776 NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+...++++..++.|++||....... ....+ +...+. .+.+.+ ++.+|++|+.||+|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~--h~~~v~----~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFG--HENRVS----TLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECC--CSSCEE----EEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceE-EEEEC--CCCcEE----EEEECC-CCCEEEEEcCCCCEEecC
Confidence 4567888999999999996533221 11111 223333 344444 678999999999999995
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.5e-29 Score=283.15 Aligned_cols=285 Identities=17% Similarity=0.253 Sum_probs=220.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+..++|+|||+++++++.+ +|||+.++.....+... ......+.+.+++ +++.|+.+++||+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-----~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-----CPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-----CTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-----CCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 455678999999999999987765 89999887655433211 1112223344454 78899999999987
Q ss_pred CCc----eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE-----ccCCCCeEEEEEcC-CC
Q 003106 624 QGF----SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSP-SM 692 (847)
Q Consensus 624 ~~~----~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l-----~~h~~~I~~v~fsp-~~ 692 (847)
+.. .......+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+++.+..+ .+|...|.+++|++ ++
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence 532 22345567899999999999996 567999999999999999999998887 67999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-----
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF----- 767 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~----- 767 (847)
++|++|+.|++|+|||++.....+..+.+|...|++|+|+|++. +|++|+.||+|+|||+++++++..+..+..
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 89999999999999999865778899999999999999999987 566999999999999999999988875432
Q ss_pred --eEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 --CCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 --~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+.++.+. ....++++..+|.|++||.......... .....+...+....| .+ ++.+|++|+.||+|+||+
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~----s~-dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL----SS-DGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE----CS-SSSEEEEECTTSCEEEEE
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE----CC-CCCEEEEeeCCCCEEEEe
Confidence 36667665 4567889999999999996543322111 111122333343333 34 688999999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+..
T Consensus 373 ~~~ 375 (380)
T 3iz6_a 373 FSG 375 (380)
T ss_dssp CCS
T ss_pred cCC
Confidence 853
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.3e-28 Score=264.51 Aligned_cols=276 Identities=19% Similarity=0.349 Sum_probs=217.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|+|||+++++++.+ ++||+.+++....+. .+...+. +.+.+++ +++.|+.|++||+
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc------cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 455678899999999999886544 899998876654322 1222233 3344444 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.++ +.+..+.+|...|.+++|+|++++|++|+.|++|+|||+++++.+..+..|...|.+++|+|++++|++++.||
T Consensus 95 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 95 SSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 977 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE----EEEecCC
Q 003106 703 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW----CVNAMNR 777 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~----~~~~~~~ 777 (847)
.|++||+++ +..+..+ ..+...|.+++|+|++. +|++++.|+.|++||+++++++..+..+..... .....+.
T Consensus 172 ~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 172 LCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CEEEEETTT-CCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred cEEEEECCC-CceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 999999998 5555555 45677899999999988 455899999999999999999999987765322 2233456
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe--CCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC--GDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs--~DG~V~vW~~g 845 (847)
..++++..++.|++|+...... ...+. .+. ..++.+.+++ ++.+|++++ .||+|++|+..
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~--~~~~~-~h~----~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEI--VQKLQ-GHT----DVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCE--EEEEC-CCS----SCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCchh--hhhhh-ccC----CcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 6788999999999999764322 22111 112 2344455555 577888886 69999999975
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=6.6e-29 Score=268.92 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ ..+..+..|...|.+++|++++++|++|+.|++|+|||+.+++.+..+.+|...|++|+|+
T Consensus 30 s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 106 (304)
T 2ynn_A 30 TTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106 (304)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 5778999999999877 5677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~~ 768 (847)
|++++|++|+.|++|+|||+++.......+.+|...|++++|+|++..+|++|+.|++|++||++++.+...+.. +...
T Consensus 107 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~ 186 (304)
T 2ynn_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (304)
T ss_dssp SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc
Confidence 999999999999999999999855667788999999999999996556788999999999999998877666654 4456
Q ss_pred EEEEEec---CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM---NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~---~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+. +...+++++.++.|++||...... ...+. .+...+....| .+ ++.+|++|+.||+|++|++.
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~-~h~~~v~~~~~----~p-~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLE-GHMSNVSFAVF----HP-TLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEE----CS-SSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeC-CCCCCEEEEEE----CC-CCCEEEEEcCCCeEEEEECC
Confidence 6666654 345789999999999999764322 11111 12223333333 34 57799999999999999987
Q ss_pred CC
Q 003106 846 TY 847 (847)
Q Consensus 846 ty 847 (847)
++
T Consensus 259 ~~ 260 (304)
T 2ynn_A 259 TY 260 (304)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=2.4e-28 Score=268.99 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=208.6
Q ss_pred CCCCCcceEEE-----ec-CCCeEeecCCC---eEEeCCCCchhhccccc-cccCCCCCceEE-eeecCC----CCCCCC
Q 003106 551 SGTTSKPLMMF-----GT-DGAGTLTSPSN---QLWDDKDLELRADMDRL-VEDGSLDDNVES-FLSHDD----TDPRDA 615 (847)
Q Consensus 551 ~~~~~~~~v~~-----s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~-~~~g~~d~~v~~-~~s~d~----t~~~d~ 615 (847)
.|...+..++| ++ ||..+++++.+ ++||+.+.+........ .....+...|.. .+.+++ +++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 35556788888 66 89988887655 89999765432111111 111123333433 344444 678899
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~ 692 (847)
+|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+.. .....+. .|...|.+++|+|++
T Consensus 99 ~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 99 TLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp EEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCC
T ss_pred cEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecccc
Confidence 9999999977 56778899999999999999999999999999999999984 3333333 788999999999987
Q ss_pred ----------CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEE
Q 003106 693 ----------PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV 761 (847)
Q Consensus 693 ----------~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~ 761 (847)
.+|++++.|++|+|||.+ ......+.+|...|++++|+|++. +|++|+.||.|+|||++. ......
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEE
T ss_pred ccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCccccee
Confidence 789999999999999954 567788899999999999999987 566999999999999954 444444
Q ss_pred EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccc------cCCCCccccccccccccCCCcEEEEEeC
Q 003106 762 FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGW------YGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
+. +...+.++.+.....++++..++.+++|+.........+.... .........++.+.+.+ ++.+|++|+.
T Consensus 252 ~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~ 329 (343)
T 2xzm_R 252 FD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFT 329 (343)
T ss_dssp EE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEET
T ss_pred ec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecC
Confidence 43 3455888888877777777788899999965332211111110 00001122234444445 6788999999
Q ss_pred CCeEEEEEccC
Q 003106 836 DSSLSSFIAGT 846 (847)
Q Consensus 836 DG~V~vW~~gt 846 (847)
||+|++|++.+
T Consensus 330 Dg~v~~w~~~~ 340 (343)
T 2xzm_R 330 DGVIRTFSFET 340 (343)
T ss_dssp TSEEEEEEEEE
T ss_pred CceEEEEEEEc
Confidence 99999999754
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.2e-28 Score=278.78 Aligned_cols=224 Identities=21% Similarity=0.352 Sum_probs=193.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|++|++||+.++ +...++.+|.+.|++|+|++++++|++|+.|++|+|||+.+++++.++.+|...|++++|+
T Consensus 125 s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 125 SASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe
Confidence 5678999999999987 4567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|++++|++|+.|++|++||+++ +.++.++.+|...|.+++|++++. +|++|+.|++|++||+++++++..+..|...|
T Consensus 202 p~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp SSSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 9999999999999999999998 788999999999999999999987 66799999999999999999999999999999
Q ss_pred EEEEecC---------------------CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 770 WCVNAMN---------------------RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 770 ~~~~~~~---------------------~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
.++.+.. ...+++++.++.|++||....... ....+ +...+.. +.+.+ ++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~--h~~~v~~----v~~~~-~g~ 351 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVG--HDNWVRG----VLFHS-GGK 351 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-EEEEC--CSSCEEE----EEECS-SSS
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEEC--CCCcEEE----EEEcC-CCC
Confidence 9998765 457899999999999997643221 11111 2222333 33334 678
Q ss_pred EEEEEeCCCeEEEEEccC
Q 003106 829 CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~gt 846 (847)
+|++|+.||+|+||++.+
T Consensus 352 ~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 352 FILSCADDKTLRVWDYKN 369 (410)
T ss_dssp CEEEEETTTEEEEECCTT
T ss_pred EEEEEeCCCeEEEEECCC
Confidence 899999999999999854
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=4.2e-28 Score=261.67 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=179.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~f 688 (847)
.|++|++||+... ..+.+.++.+|.+.|++|+|++ ++++|++|+.|++|+|||+++++ .+..+.+|...|.+|+|
T Consensus 29 ~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~ 107 (297)
T 2pm7_B 29 SDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107 (297)
T ss_dssp TTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE
T ss_pred CCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe
Confidence 3455666666543 3345677889999999999986 48999999999999999998764 56778889999999999
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCCc-eEEEeccCCCCeEEEEEecCC------------CeEEEEEeCCCcEEEEEC
Q 003106 689 SPS--MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNK------------DDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 689 sp~--~~~Lasgs~Dg~V~iWD~~~~~~-~~~~~~~h~~~V~sl~fsp~g------------~~ll~s~s~Dg~V~iWD~ 753 (847)
+|+ +.+|++++.|++|++||+++... ....+.+|...|.+++|+|++ ..+|++|+.|++|+|||+
T Consensus 108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 998 88999999999999999987432 246778999999999999973 247789999999999999
Q ss_pred CCCc----eEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 754 NNGS----CTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 754 ~~~~----~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
++++ ++..+.+|...|.++.+... ..+.+++.++.|++|+.............. .......+|.+.+.+
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~- 264 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSL- 264 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECS-
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee--cccCCCcEEEEEECC-
Confidence 8876 66788899999999998765 578899999999999865322111110000 011123455555555
Q ss_pred CCcEEEEEeCCCeEEEEEcc
Q 003106 826 RECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~g 845 (847)
++.+|++|+.||+|+||+..
T Consensus 265 ~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSCCEEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEEEC
Confidence 67889999999999999875
No 18
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=6.4e-28 Score=266.06 Aligned_cols=287 Identities=12% Similarity=0.053 Sum_probs=217.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCc--hhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLE--LRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~--~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
+...+..++|++||+++++++.+ ++||+.+++ ....+. .+...+. +.+.+++ +++.|+.|++||
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE------CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec------CCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 44567899999999999887544 899998875 222221 1223333 3344444 577899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEE-EccCCCCeEEEEEcCCCCEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTN-LEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~-l~~h~~~I~~v~fsp~~~~Las 697 (847)
+.++ .......+..|...|.+++|++++++|++|+.|+.|++||++.+.. ... ...|...|++++|+|++++|++
T Consensus 81 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 81 LKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EETT-EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCC-eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 9877 4455556678999999999999999999999999999999987762 333 3678999999999999999999
Q ss_pred EeCCCcEEEEECC-----------------CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 698 SSFDKTVRVWDAD-----------------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 698 gs~Dg~V~iWD~~-----------------~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
++.||.|++||++ ..+..+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++.
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeE
Confidence 9999999999964 12577888889999999999999987 56699999999999999999999
Q ss_pred EEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc--ccceeeecc-----------------------c---------
Q 003106 761 VFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF--INANIFCGL-----------------------G--------- 806 (847)
Q Consensus 761 ~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~--~~~~~~~~~-----------------------~--------- 806 (847)
.+..+...+.++.+.....++....++.|.+|+... ..-...... +
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 999998889999887666666666999999999654 110000000 0
Q ss_pred ccCCCCccccccccccccCCC---cEEEEEeCCCeEEEEEccC
Q 003106 807 WYGSDEIPAPSWKVSCRSCRE---CCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~---~~l~sGs~DG~V~vW~~gt 846 (847)
..-.......++.+.+.+.++ .+|++|+.||+|++|++.+
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000001122334444444455 8999999999999999753
No 19
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=4.3e-28 Score=292.94 Aligned_cols=289 Identities=20% Similarity=0.252 Sum_probs=211.3
Q ss_pred CCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
.|...+.+++|++++ ..+++++.+ +|||+.+............. .+...|. +.+++++ +++.|++|++||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 456678899999876 456666554 89999865432111111111 2333343 3345555 688899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEEEEcCCC--CEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSM--PRLA 696 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v~fsp~~--~~La 696 (847)
+.++ +.+..+.+|...|++|+|+|++++|++|+.|++|+|||+......... .+|...|.|++|+|++ ..|+
T Consensus 459 ~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 459 LAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp TTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred CCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9977 567788999999999999999999999999999999998754333322 4688999999999986 5899
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
+|+.|++|+|||+++ ..++.++.+|.+.|++|+|+|++. +|++|+.||+|+|||+++++++..+..+ ..+.++.+..
T Consensus 536 s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 612 (694)
T 3dm0_A 536 SASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP 612 (694)
T ss_dssp EEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECS
T ss_pred EEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcC
Confidence 999999999999998 778889999999999999999987 6669999999999999999988877654 4577888777
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeeccccc------------CCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWY------------GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++....++.|++||............... ........+..+.+.+ ++.+|++|+.||+|+||++
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEec
Confidence 77777777778899999654322111110000 0000001122233334 6889999999999999999
Q ss_pred cCC
Q 003106 845 GTY 847 (847)
Q Consensus 845 gty 847 (847)
+.|
T Consensus 692 ~~~ 694 (694)
T 3dm0_A 692 GRY 694 (694)
T ss_dssp ---
T ss_pred cCC
Confidence 876
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=6.9e-28 Score=286.95 Aligned_cols=287 Identities=19% Similarity=0.188 Sum_probs=218.4
Q ss_pred cCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEE
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vw 620 (847)
.+.........++|+|||+.++++... +|||+.++.....+. + +...| ++.+++++ +++.|++|++|
T Consensus 13 ~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-----~-h~~~v~~~~~spdg~~lasg~~d~~v~lW 86 (611)
T 1nr0_A 13 LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-----E-HSHQTTVAKTSPSGYYCASGDVHGNVRIW 86 (611)
T ss_dssp CCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-----C-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-----C-CCCceEEEEECCCCcEEEEEeCCCCEEEe
Confidence 334444556778999999988876544 789998765544321 1 22333 34466766 67889999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RL 695 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~L 695 (847)
|+.++ .......+.+|.+.|.+++|+||+++|++++.+ ++|++|| +++.+.++.+|...|++|+|+|++. .|
T Consensus 87 d~~~~-~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 87 DTTQT-THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp ESSST-TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred ECCCC-cceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence 99765 234456788999999999999999999999875 3677776 5667778899999999999999987 69
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-------eCCce
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------VESFC 768 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-------~~~~~ 768 (847)
++|+.|++|++||.++ ..++.++.+|...|++|+|+|++. +|++++.|++|+|||+++++++..+. +|...
T Consensus 164 ~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 9999999999999987 778889999999999999999987 66799999999999999999998884 68889
Q ss_pred EEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc-----------c------cCC-------------------C
Q 003106 769 CWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG-----------W------YGS-------------------D 811 (847)
Q Consensus 769 v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-----------~------~~~-------------------~ 811 (847)
|.++.+.. ...+.+++.++.|++||............+ + ... .
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 99998875 457889999999999996532211100000 0 000 0
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....++.+.+.+ ++.+|++|+.||+|++|++.+
T Consensus 322 gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 322 GHNKAITALSSSA-DGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Confidence 0112233444444 688999999999999999753
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=8.4e-28 Score=262.77 Aligned_cols=234 Identities=23% Similarity=0.307 Sum_probs=201.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+...+..+.|++++..+++++.+ ++||+.+++....+.. + ......+.+.+++ +++.++.+++||+.
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~----~-~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA----G-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----C-TTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC----C-CccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 455667889999999998887655 8999998876544321 1 1111223344444 67789999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +....+..|...|.+++|+||+++|++|+.||.|+|||+.+++.+.++.+|...|++|+|+|++++|++|+.|++
T Consensus 153 ~~---~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 153 SG---KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp TC---SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred CC---ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 77 456677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|+|||+++ ...+.++.+|...|.+++|+|++. +|++++.|++|+|||+++++++..+..|...|.++.+.. ...+++
T Consensus 230 i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 230 IKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 99999998 778889999999999999999987 566999999999999999999999999999999998875 457889
Q ss_pred EcCCCcEEEEcC
Q 003106 783 KLDAGDIQISDS 794 (847)
Q Consensus 783 ~~~~g~i~i~d~ 794 (847)
+..++.|++||.
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 999999999984
No 22
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=2.2e-28 Score=275.24 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=209.8
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCceee
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~ 629 (847)
..++|+|||+++++++.+ ++||+.+.+....+.. .......++.+++ +++.|+.|++||+.++ +
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 130 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR------ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---L 130 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS------CCEEEEEEECSSSCEEEEEETTSCEEEECTTSC---E
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec------CCceEEEEEecCCCEEEEEECCCCEEEEeCCCc---c
Confidence 467999999998887644 8999988765443221 1112222344444 5778999999999866 5
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
....+.+|...|++++|+|++++|++|+.|++|+|||+++++.+..+.+|...|++++|+|++++|++++.|++|++||+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecc---CCCCeEEEEE---------------------ecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-
Q 003106 710 DNPGYSLRTFMG---HSASVMSLDF---------------------HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV- 764 (847)
Q Consensus 710 ~~~~~~~~~~~~---h~~~V~sl~f---------------------sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~- 764 (847)
++ +..+..+.. |...|.+++| +|++. +|++++.||.|++||+++++.+..+..
T Consensus 211 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 211 GT-GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp TT-TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred CC-CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 98 677777764 4445555555 67765 667999999999999999988777754
Q ss_pred CCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 765 ESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 765 ~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+...+.++.+.... .++++..+|.|++||.......+.... ..+...+....|. ++.+|++|+.||+|++|
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~------~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-INEGTPINNVYFA------AGALFVSSGFDTSIKLD 361 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-ESTTSCEEEEEEE------TTEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-ccCCCCceEEEeC------CCCEEEEecCCccEEEE
Confidence 66778888877543 789999999999999764332111111 1122223332222 46799999999999999
Q ss_pred Ecc
Q 003106 843 IAG 845 (847)
Q Consensus 843 ~~g 845 (847)
++.
T Consensus 362 ~~~ 364 (420)
T 3vl1_A 362 IIS 364 (420)
T ss_dssp EEC
T ss_pred ecc
Confidence 975
No 23
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.2e-28 Score=273.52 Aligned_cols=234 Identities=11% Similarity=0.072 Sum_probs=179.4
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCC--chhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEecc
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDL--ELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~--~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~ 623 (847)
..+..++|+|||+++++++.+ +|||+.++ .....+. .+...|.. .+.+++ +++.|+.|++||+.
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS------DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC------CCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe------cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 367889999999999887544 89999876 3332221 12333333 344444 67789999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcc-CCCCeEEEEEcCCCCEEEEEe
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE-HSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~-h~~~I~~v~fsp~~~~Lasgs 699 (847)
++..+.....+.+|...|++++|+|++++|++|+.|+.|+|||+++++ ....+.. |...|++++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 874456777888999999999999999999999999999999999876 4777887 999999999999999999999
Q ss_pred CCCcEEEEECCCC-----------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce----
Q 003106 700 FDKTVRVWDADNP-----------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---- 758 (847)
Q Consensus 700 ~Dg~V~iWD~~~~-----------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---- 758 (847)
.|++|++||++.. +.++..+ +|...|++++|+|++. +|++++.||+|+|||++++++
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCccee
Confidence 9999999998631 3345566 8999999999999988 556999999999999999987
Q ss_pred EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 759 TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+..+..|...+.++.+.....++....++.+.+|+..
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7888899999999988766655555556666677643
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=260.36 Aligned_cols=228 Identities=19% Similarity=0.264 Sum_probs=177.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV-RA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~ 680 (847)
+++.|++|++||+..+ .+..+..+ .+ |...|++|+|+|++++|++|+.|++|+|||++. .+.+..+.+|.
T Consensus 29 s~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 107 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107 (330)
T ss_dssp EEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred EEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence 5677899999999875 34455555 44 999999999999999999999999999999852 45677889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~- 756 (847)
..|++|+|+|++++|++|+.|++|+|||++..+ .++..+.+|...|.+|+|+|++. +|++|+.|++|+|||++++
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC
Confidence 999999999999999999999999999995422 46778899999999999999987 6679999999999999876
Q ss_pred -ceEEEEeeCCceEEEEEecCC---CEEEEEcCCCcEEEEcCCcccc------eeeecccccCCCCccccccccccccCC
Q 003106 757 -SCTRVFKVESFCCWCVNAMNR---PCLWDKLDAGDIQISDSLFINA------NIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 757 -~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~~g~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
+++..+.+|...|+++.+... ..+++++.++.|++|+...... .........+...+. .+.+. .
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~v~~s--~ 260 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY----NVAWG--F 260 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE----EEEEC--T
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE----EEEEc--C
Confidence 688899999999999988764 4688999999999998542210 011111111222333 33333 2
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++|+.||+|+||+..
T Consensus 261 ~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 261 NGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp TSCEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCEEEEEEcC
Confidence 4589999999999999864
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=263.45 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=189.6
Q ss_pred CCcceEEEecCCCeEeecCC--CeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 554 TSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
..+..++|++|+..+.++.+ .+|||+.+++......... ..+...|.+ .+++++ +++.|++|++||+.++
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc--cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 34678999999765544333 3899999887554322211 123344443 355565 6889999999999987
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDK 702 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~-~~~Lasgs~Dg 702 (847)
+.+.++.+|.+.|++++|++++ .+|++|+.|++|+|||+++++.+..+. .|...|++++|+|+ +++|++|+.||
T Consensus 160 --~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 --VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp --EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred --cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 6788899999999999999987 478999999999999999999888775 45667999999996 56889999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC--CCEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN--RPCL 780 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~--~~~l 780 (847)
+|+|||+++ +.++.++.+|...|++|+|+|++..+|++|+.|++|+|||+++++++ .+.+|...|.++.+.. ...+
T Consensus 238 ~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 238 TVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp EEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEE
T ss_pred cEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEE
Confidence 999999998 78889999999999999999999878889999999999999998765 5678999999999864 3456
Q ss_pred EEEcCCCcEEEEcCC
Q 003106 781 WDKLDAGDIQISDSL 795 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~ 795 (847)
.+++.|+.|++|+..
T Consensus 316 as~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEEcCCCeEEEEECC
Confidence 688999999999865
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=8e-27 Score=253.87 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=216.8
Q ss_pred CCCCCcceEEEecC-CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
.|...+..++|+|+ +.++++++.+ +|||+.+.+...........+ +...|. +.+.+++ +++.|+.|++|+
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 46678899999998 5677776554 899998765433222111112 233343 3355555 678899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCCC--CEEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSM--PRLATS 698 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~~--~~Lasg 698 (847)
.... ........+...+.++.+++++++|++|+.|+.|++||+..... ...+.+|...|.+++|++++ .+++++
T Consensus 115 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 115 LTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp TTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred eccc---ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 9876 55666778889999999999999999999999999999886544 34456899999999999875 468899
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
+.|++|++||+++ ...+..+.+|...|++|+|+|++. +|++|+.||+|+|||+++++++..+..+. .+.++.+....
T Consensus 192 ~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~ 268 (340)
T 4aow_A 192 GWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNR 268 (340)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEEEECSSS
T ss_pred cCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCc-eEEeeecCCCC
Confidence 9999999999998 788899999999999999999987 66699999999999999999998887654 57777777777
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeeccc--ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLG--WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++++..++.|++|+............. ..........++.+.+.+ ++.+|++|+.||+|+||++.+
T Consensus 269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC
T ss_pred ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCC
Confidence 8888889999999996532221111100 001111122333444444 678999999999999999854
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1.5e-26 Score=250.73 Aligned_cols=281 Identities=13% Similarity=0.149 Sum_probs=219.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+...+..++|++||+++++++.. ++||+.++.....+..+... .....+. +.+.+++ +++.|+.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeeccccc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 355678899999999999887733 88999887654433322211 1223333 3344444 56778999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ .......+..|...|.+++|++++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.
T Consensus 128 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 128 AP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CC-CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 87 44567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|++||+++ +..+..+ .|...|.+++|+|++. +|++++.|+.|++||+++++. ..+..+...+.++.+.. ...+++
T Consensus 207 i~~~d~~~-~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 207 VRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEETTT-TEEEEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CceEeee-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEE
Confidence 99999998 6666665 4778899999999987 556888999999999998875 45677888888888774 457888
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+..++.|.+|+......... ..+...+....|+ + ++.+|++++.||.|++|++-+
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~----~~~~~~v~~~~~s----~-~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDIS----V-DDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EETTSEEEEEETTTCCEEEE----EECSSCEEEEEEC----T-TSCEEEEEETTSCEEEEEEEC
T ss_pred ecCCCcEEEEECCCCeEEEE----ecCCCcEEEEEEC----C-CCCEEEEecCCCeEEEEEEeC
Confidence 99999999999764332211 1122333333333 3 678999999999999999753
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=5.2e-27 Score=258.20 Aligned_cols=234 Identities=17% Similarity=0.220 Sum_probs=193.6
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
...+..++|+|+|.++++++.+ ++||+.+.+......... ..+...+. +.+..++ +++.|++|++||+.++
T Consensus 97 ~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC
Confidence 3456788999999999887655 899998754221111111 11222333 2233343 6778999999999977
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+++++.+.++.+|...|++|+|+|++++|++|+.||+|+
T Consensus 175 ---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 175 ---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp ---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEE
Q 003106 706 VWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 782 (847)
|||+++ +..+..+.. +...|++++|+|++. +|++|+.|+.|+|||+.+++++..+.+|...|.++.+... ..+++
T Consensus 252 iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 252 LFDLRA-DQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEECCC-CcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 999998 566666542 335799999999987 5669999999999999999999999999999999988754 56889
Q ss_pred EcCCCcEEEEc
Q 003106 783 KLDAGDIQISD 793 (847)
Q Consensus 783 ~~~~g~i~i~d 793 (847)
++.++.|++|+
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
No 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=8.5e-27 Score=277.55 Aligned_cols=276 Identities=16% Similarity=0.218 Sum_probs=204.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCC----CCCcEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDP----RDAGGR 618 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~----~d~~v~ 618 (847)
.|...+..++|+|||+++++++.+ +|||+.+++..... .+ ..+...|. +.+++++ +++ .++.|+
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TI---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EE---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-ee---cccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 355568899999999999987655 89999755322110 01 11222333 3344444 111 224677
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
+||. + .....+.+|...|++++|+|++. +|++|+.|++|+|||..+++++.++.+|...|++|+|+|++++|++
T Consensus 133 ~wd~--~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 133 LFDT--G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp ETTT--C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EeeC--C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence 7774 3 34556889999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCCceEEEec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE--------
Q 003106 698 SSFDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------- 762 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-------- 762 (847)
|+.|++|+|||+.+ +.++..+. +|.+.|++|+|+|++. +|++++.|++|+|||+++++++..+
T Consensus 208 ~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 208 TGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 99999999999998 67777774 7999999999999987 5669999999999999988766544
Q ss_pred -----------------------------------eeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc
Q 003106 763 -----------------------------------KVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG 806 (847)
Q Consensus 763 -----------------------------------~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 806 (847)
.+|...|.++.+.. ...++++..++.|++|+....... ....
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~--~~~~ 363 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFP 363 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSS
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--eecc
Confidence 34556677777654 457788888999999986533221 1111
Q ss_pred ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 807 WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+...+ +.+.+. .+..+++++.|++|++|+++
T Consensus 364 ~~h~~~v----~~~~~s--~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 364 DVHATMI----TGIKTT--SKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp CSCSSCE----EEEEEC--TTSCEEEEETTTEEEEECSS
T ss_pred cCCcceE----EEEEEC--CCCcEEEEEcCCceEEeecC
Confidence 1122222 223322 24578999999999999875
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.3e-27 Score=262.46 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=212.8
Q ss_pred CCCCCCcceEEEecC---CC--eEeecCCC--eEEeCCCCchhhccccccccCCCCCce-EEeeecC----C----CCCC
Q 003106 550 HSGTTSKPLMMFGTD---GA--GTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHD----D----TDPR 613 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d---G~--~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d----~----t~~~ 613 (847)
..|...+..++|+|+ +. .+++++.+ ++||+.+++....+..+.... .+..+ .+.+.++ + +++.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD-ADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSC-TTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccC-CCCcEEEEEeccCCCCCCCEEEEecC
Confidence 356678899999984 44 33333333 899999876655544332211 22223 2334444 2 5778
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v~fs 689 (847)
|+.|++||+.++ +.+..+.+|...|++++|+| ++++|++|+.||.|+|||+++++.+..+ ..|...|++++|+
T Consensus 94 dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 94 RGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp TCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999876 56777889999999999999 9999999999999999999999999888 7899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceE----------------------------EEeccCCCCeEEEEEecCCCeEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSL----------------------------RTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~----------------------------~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
|++++|++++.||.|++||+++ +..+ ....+|...|.+++|+ +. +|++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~ 246 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILS 246 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEE
T ss_pred CCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEE
Confidence 9999999999999999999987 3322 2334499999999999 44 6779
Q ss_pred EeCCCcEEEEECCCCce--------------EEEEeeCCceEEEEEecC---CCEEEEEcCCCcEEEEcCCcccce--ee
Q 003106 742 CDGDGEIRYWSINNGSC--------------TRVFKVESFCCWCVNAMN---RPCLWDKLDAGDIQISDSLFINAN--IF 802 (847)
Q Consensus 742 ~s~Dg~V~iWD~~~~~~--------------~~~~~~~~~~v~~~~~~~---~~~l~~~~~~g~i~i~d~~~~~~~--~~ 802 (847)
++.|+.|++||++++.. +..+..+...+.++.+.. ...++++..+|.|++|+....... ..
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 99999999999988754 777777877777776553 567888999999999996643221 11
Q ss_pred ecc-cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 803 CGL-GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 803 ~~~-~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
... .+.+...+....|+ + ++.+|++|+.||.|++|++-+
T Consensus 327 ~~~~~~~~~~~v~~~~~s----~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFS----R-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCTTCCSCEEEEEEC----T-TSSEEEEEETTSEEEEEEC--
T ss_pred eEEcccccCCceEEEEeC----C-CCCeEEEEeCCCEEEEEEecC
Confidence 111 11113334444444 4 688999999999999999753
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=8.2e-27 Score=259.75 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=203.5
Q ss_pred CCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeec-CC----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSH-DD----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~-d~----t~~~d~~v~vw 620 (847)
.+...+..++|+++| +++++++.+ +|||+.+++....+. ...+...|.. .+.+ ++ +++.|+.|++|
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC----CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee----cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 345678899999999 777776544 899999876544321 1113333333 2344 22 67889999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEe
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs 699 (847)
|+.+. ....+.....|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|++|+|+|+++ +|++|+
T Consensus 147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp ETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred ECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence 99864 44444444556689999999999999999999999999999 5788889999999999999999999 899999
Q ss_pred CCCcEEEEECCCC---CceEEEeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc--------
Q 003106 700 FDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-------- 767 (847)
Q Consensus 700 ~Dg~V~iWD~~~~---~~~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-------- 767 (847)
.|++|+|||+++. ..++..+ +|...|++++|+| ++. +|++++.|+.|+|||+++++++..+..+..
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP 302 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence 9999999999862 3345555 7999999999999 876 566999999999999999988777765431
Q ss_pred ---------eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 768 ---------CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 768 ---------~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
.+.++.+..+..+ +++.++.|++||...... ...+. ..+...+....|+ + ++.+|++|+ ||
T Consensus 303 ~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s----~-~g~~l~s~s-d~ 373 (383)
T 3ei3_B 303 IKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFS----P-TGDVLASGM-GF 373 (383)
T ss_dssp CCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEEC----T-TSSEEEEEE-TT
T ss_pred eEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEe----c-CccEEEEec-CC
Confidence 1222333333333 667899999999654332 22221 1122223332344 3 678899997 99
Q ss_pred eEEEEEccC
Q 003106 838 SLSSFIAGT 846 (847)
Q Consensus 838 ~V~vW~~gt 846 (847)
.|+||++.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999864
No 32
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=1.6e-27 Score=259.63 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=178.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~v~ 687 (847)
+.|++|++||+.++ ....+..+.+|.+.|++|+|++ ++++|++|+.|++|+|||++++ ..+..+.+|...|++|+
T Consensus 32 s~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 32 SSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp ETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred eCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 34566777777665 3345677899999999999986 4899999999999999999876 45677889999999999
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCC----------------CeEEEEEeCCCc
Q 003106 688 FSPS--MPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNK----------------DDLICSCDGDGE 747 (847)
Q Consensus 688 fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g----------------~~ll~s~s~Dg~ 747 (847)
|+|+ +.+|++|+.|++|+|||++..... ...+.+|...|.+++|+|+. ..+|++|+.|++
T Consensus 111 ~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 111 WAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190 (316)
T ss_dssp ECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB
T ss_pred ECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCe
Confidence 9998 789999999999999999873222 34567899999999999973 236779999999
Q ss_pred EEEEECCCC---ceEEEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCcccccc
Q 003106 748 IRYWSINNG---SCTRVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSW 818 (847)
Q Consensus 748 V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w 818 (847)
|+|||++.+ +++..+.+|...|.++.+... ..+++++.++.|++|+.......... .....+ ...+|
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~----~~~v~ 266 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF----NDVVW 266 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC----SSCEE
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC----CCcEE
Confidence 999999865 467788899999999998754 57889999999999986532110000 000011 23455
Q ss_pred ccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 819 KVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+ ++.+|++|+.||+|+||+..
T Consensus 267 ~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 555555 67889999999999999864
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-27 Score=265.90 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=217.1
Q ss_pred CCCCcceEEEecCCCeEeecCC---CeEEeCCCCchhh-ccccccccCCCCCce-EEeeecC-C----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRA-DMDRLVEDGSLDDNV-ESFLSHD-D----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~-~~~~~~~~g~~d~~v-~~~~s~d-~----t~~~d~~v~vwd 621 (847)
+...+..++|++||.++++++. .++||+.+..... ....+. .+...| ++.+.++ + +++.|+.|++||
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---CSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---CCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 4556789999999999888644 4899998732111 111111 122223 2334444 3 678899999999
Q ss_pred ccCCc------eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccC------CCCeEEEEE
Q 003106 622 VSQGF------SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRF 688 (847)
Q Consensus 622 ~~~~~------~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h------~~~I~~v~f 688 (847)
+.++. .......+..|...|.+++|+|+ +.+|++|+.|+.|+|||+++++.+..+..| ...|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99874 22333445789999999999998 789999999999999999999999998876 788999999
Q ss_pred cCCC-CEEEEEeCCC---cEEEEECCCCCceEEEec-cCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 689 SPSM-PRLATSSFDK---TVRVWDADNPGYSLRTFM-GHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 689 sp~~-~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
+|++ .+|++++.|+ .|++||+++....+..+. +|...|++++|+| ++. +|++++.||.|++||+++++++..+
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceee
Confidence 9997 5899999998 999999998556777888 8999999999999 555 6779999999999999999999999
Q ss_pred eeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccceeee----------------ccc------------c----c
Q 003106 763 KVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINANIFC----------------GLG------------W----Y 808 (847)
Q Consensus 763 ~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~----------------~~~------------~----~ 808 (847)
..|...+.++.+... ..++++..++.|++|+.......... ..+ + .
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 999999988888764 57889999999999996533221110 000 0 0
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
....+....|+ .++.+|++|+.||+|+||++.+
T Consensus 382 ~~~~~~~~~~s-----~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 382 YGEPSPAAHWA-----FGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp TCCCSCCCEEE-----TTTEEECBCTTSSCBCCBCCCC
T ss_pred ccCCccceEEe-----eCCeEEEEeCCCCeEEEEEecc
Confidence 01111122222 3688999999999999999865
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=5.5e-26 Score=245.85 Aligned_cols=227 Identities=21% Similarity=0.278 Sum_probs=185.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.+++||+.++ +....+.+|...|.+++|+|++++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+
T Consensus 40 s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 116 (312)
T 4ery_A 40 SSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116 (312)
T ss_dssp EEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 5677899999999876 4566788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~~ 768 (847)
|++++|++|+.|++|++||+++ +..+..+..|...|.+++|+|++. +|++++.||.|++||+++++++..+.. +...
T Consensus 117 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 117 PQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp SSSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred CCCCEEEEEeCCCcEEEEECCC-CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 9999999999999999999998 778889999999999999999987 566999999999999999998877754 4456
Q ss_pred EEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 769 CWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 769 v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.++.+.. ...++++..++.|++||....... ....++.. ..... + ..+...++.+|++|+.||.|++|++.+
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~--~~~~~-~-~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGHKN--EKYCI-F-ANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-EEECSSCC--SSSCC-C-EEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EEEEecCC--ceEEE-E-EEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 77777654 457888999999999997643221 11111111 11111 1 111233578999999999999999864
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=254.70 Aligned_cols=230 Identities=20% Similarity=0.310 Sum_probs=183.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.++..........+|...|++++|+|++++|++|+.|++|+|||+.++ +++.++.+|...|++|+
T Consensus 33 s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 6778999999999877222223334789999999999999999999999999999998866 46778999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~ 763 (847)
|+|++++|++|+.|++|+|||+++.. .++..+.+|...|.+++|+|++. +|++++.|++|++||++++. ++..+.
T Consensus 113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 99999999999999999999998733 34677889999999999999987 56699999999999999875 557888
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccce-------------eeecccccCCCCccccccccccccCCCcE
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINAN-------------IFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
+|...|.++.+.. ...+++++.++.|++|+....... ........+ ...++++.+.+ ++..
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~~-~~~~ 266 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH----SRTIYDIAWCQ-LTGA 266 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC----SSCEEEEEECT-TTCC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC----CCcEEEEEEec-CCCE
Confidence 9999999999875 457889999999999984211100 001111111 22344455444 5678
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
|++++.|+.|++|++.
T Consensus 267 l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 267 LATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEEeCCCeEEEEEeC
Confidence 9999999999999864
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=4.7e-26 Score=267.53 Aligned_cols=267 Identities=23% Similarity=0.342 Sum_probs=212.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||..+++.+.+ ++||.....+.. + ..+...+. +.+.+++ ++..++.+++||..
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~----~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~ 374 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT----L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE----E---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE----E---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence 44567789999999998876544 899987654322 1 11222232 3345554 56788999999964
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
. +.+..+.+|...|++++|+||+++|++++.|+.|+|||. +++.+..+.+|...|++++|+|++++|++++.|++
T Consensus 375 ~----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 375 G----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp C----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred C----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 3 467778899999999999999999999999999999995 57888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|++||+. +..+..+.+|...|++++|+|+++ +|++++.|++|+|||. +++++..+.+|...|.++.+.. ...+++
T Consensus 450 v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 525 (577)
T 2ymu_A 450 VKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525 (577)
T ss_dssp EEEEETT--SCEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEEEECC--CCEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE
Confidence 9999975 577888999999999999999987 5669999999999995 6889999999999999998875 456788
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..++.|++||... ..+..+. .+.. .++.+.+.+ ++.+|+|++.||+|++||
T Consensus 526 ~~~dg~v~lwd~~~---~~~~~~~-~h~~----~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 526 ASDDKTVKLWNRNG---QLLQTLT-GHSS----SVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EETTSEEEEECTTS---CEEEEEE-CCSS----CEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EECcCEEEEEeCCC---CEEEEEc-CCCC----CEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 99999999999532 2222111 1222 334444444 688899999999999997
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-25 Score=246.03 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=209.0
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|++||+++++++.+ ++||+.+++....+.. +...|. +.+.+++ +++.|+.|++||+
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG------HTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 456678999999999998886544 8999998876554321 222333 2334444 5778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEccCCC--CeE
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLK-----------SKTNLEEHSS--LIT 684 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~-----------~~~~l~~h~~--~I~ 684 (847)
.++ +.+..+. |...|.+++|+|++++|++++.+ +.|++||+.... .+..+..|.. .|.
T Consensus 104 ~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 104 SNG---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTC---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 987 4445555 88999999999999999999999 999999987543 3445556666 899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+++|+|++++|++++.||.|++||+++....+..+..|...|.+++|+|++. +|++++.|+.|++||+++++++..+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999999986678888999999999999999987 55689999999999999999998888
Q ss_pred CCceEEEEEec-CCCEEEEEcCCC--------------cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 765 ESFCCWCVNAM-NRPCLWDKLDAG--------------DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 765 ~~~~v~~~~~~-~~~~l~~~~~~g--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
+...+.++.+. ....++.+..++ .+.+|+........ .. ..+...+....|+ + ++.+
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~-~~~~~~v~~~~~s----~-~~~~ 329 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--RV-QGHFGPLNTVAIS----P-QGTS 329 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--EE-ECCSSCEEEEEEC----T-TSSE
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--he-ecccCcEEEEEEC----C-CCCE
Confidence 44445555554 445666666666 67888755332211 11 1122333333343 4 6789
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
|++|+.||.|+||++.
T Consensus 330 l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEcCCCeEEEEECc
Confidence 9999999999999974
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=260.69 Aligned_cols=280 Identities=10% Similarity=0.156 Sum_probs=213.9
Q ss_pred CcceEEEecCCC-eEeec----------C---CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCC
Q 003106 555 SKPLMMFGTDGA-GTLTS----------P---SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDA 615 (847)
Q Consensus 555 ~~~~v~~s~dG~-~~~~~----------~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~ 615 (847)
.+..++|+|||+ +++++ + ..+|||+.++.....+..+ .+...+. +.+.+++ +++.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL----QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC----CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE----ecCCceEEEEECCCCCeEEEEccCC
Confidence 345778999998 55555 2 3489999987643222111 1233333 3344454 567899
Q ss_pred cEEEEeccCCc-eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc------eeEE---EccCCCCeE
Q 003106 616 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK------SKTN---LEEHSSLIT 684 (847)
Q Consensus 616 ~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~------~~~~---l~~h~~~I~ 684 (847)
.|++||+.+.. ..+.+..+.+|...|++++|+|+ +++|++|+.|+.|+|||+.+++ .... +..|...|+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 99999998731 12477788999999999999998 8999999999999999999876 3332 367999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccC------CCCeEEEEEecCCCeEEEEEeCCC---cEEEEECC
Q 003106 685 DVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGH------SASVMSLDFHPNKDDLICSCDGDG---EIRYWSIN 754 (847)
Q Consensus 685 ~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~ 754 (847)
+++|+|+ +.+|++++.||.|++||+++ +..+..+..| ...|.+++|+|++..+|++++.|+ .|++||++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTT-TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999999 78999999999999999998 7777887766 788999999999877888999998 99999999
Q ss_pred CC-ceEEEEe-eCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 755 NG-SCTRVFK-VESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 755 ~~-~~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
++ .++..+. .|...+.++.+. +...++++..++.|++|+...... ...+. .+...+.. +.+.+....+|
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~-~~~~~v~~----~~~s~~~~~~l 321 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFP-ARGNWCFK----TKFAPEAPDLF 321 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEE-CSSSCCCC----EEECTTCTTEE
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeec-CCCCceEE----EEECCCCCCEE
Confidence 86 6777887 888899999886 467888999999999999664322 11111 12223333 44445334899
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++++.||.|+||++.+
T Consensus 322 ~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQN 337 (416)
T ss_dssp EECCSSSEEEEEESCC
T ss_pred EEEecCCcEEEEEccC
Confidence 9999999999999854
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-26 Score=252.98 Aligned_cols=282 Identities=18% Similarity=0.226 Sum_probs=211.2
Q ss_pred CCCCcceEEEecCCC-eEeecCCC---eEEeC----CCCch------hhccccccc----cCCCCCceE-EeeecCC---
Q 003106 552 GTTSKPLMMFGTDGA-GTLTSPSN---QLWDD----KDLEL------RADMDRLVE----DGSLDDNVE-SFLSHDD--- 609 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~-~~~~~~~~---~iWD~----~~~~~------~~~~~~~~~----~g~~d~~v~-~~~s~d~--- 609 (847)
+...+..++|+|||+ ++++++.+ ++||+ .+++. ...+..... ...+...+. +.+.+++
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 345678999999999 88876654 89999 77762 222111110 011232333 3345554
Q ss_pred -CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--------------
Q 003106 610 -TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 610 -t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-------------- 674 (847)
+++.|+.|++||. ++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 124 ~~~~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEeCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 6678999999993 33 5677788999999999999999999999999999999997765443
Q ss_pred ------------------------------------------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 675 ------------------------------------------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 675 ------------------------------------------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
.+..|...|++++|+|++++|++++.|+.|++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 278 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN- 278 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-
Confidence 3446778899999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQI 791 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i 791 (847)
+..+..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+..+...+.++.+.. ...++++..++.|.+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 67788888999999999999998 667999999999999999999999999988999888764 457888899999999
Q ss_pred EcCCcccce------------------eeecccccCCC-CccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 792 SDSLFINAN------------------IFCGLGWYGSD-EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 792 ~d~~~~~~~------------------~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|+....... ....+...... .+....|+ + ++.+|++|+.||.|++|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----C-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----T-TSSEEEEEESSSCCEEEECC
T ss_pred EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----C-CCceEEEEecCceEEEEeec
Confidence 996533200 11111111111 33343343 4 57799999999999999974
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=4e-26 Score=256.83 Aligned_cols=276 Identities=10% Similarity=0.053 Sum_probs=206.3
Q ss_pred cceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
.....|++||+.+++++.+ ++||+.++.....+. .+...|.. .+.+++ +++.|+.|++||+.++
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-- 171 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-- 171 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 3455789999998886544 899998776543321 13333333 344444 6788999999999977
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc---CCCCeEE-------------------
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITD------------------- 685 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h~~~I~~------------------- 685 (847)
+.+..+.+|...|++++|+|++++|++|+.|++|+|||+++++.+..+.. |...|.+
T Consensus 172 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 172 -SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp -CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred -cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 45677889999999999999999999999999999999999999988875 3344444
Q ss_pred --EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEE
Q 003106 686 --VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF 762 (847)
Q Consensus 686 --v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~ 762 (847)
++|+|++++|++|+.||.|+|||+++.........+|...|++++|+|++..+|++++.||.|++||++++++ +..+
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 330 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh
Confidence 4557899999999999999999999844444444568899999999999886778999999999999999754 7777
Q ss_pred ee-CCceEEEEEecCCCEEEEEcCCCcEEEEcCCccccee-eec-----ccccCCCCccccccccccccCCCc---EEEE
Q 003106 763 KV-ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANI-FCG-----LGWYGSDEIPAPSWKVSCRSCREC---CLYT 832 (847)
Q Consensus 763 ~~-~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~-----~~~~~~~~~~~~~w~~~~~~~~~~---~l~s 832 (847)
.. +...+.++.+.+...+++++.++.|++|+........ ... ....+...+....|. + ++. .+++
T Consensus 331 ~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~-~~~~~g~l~a 405 (420)
T 3vl1_A 331 LINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYV----S-DDESNGEVLE 405 (420)
T ss_dssp EESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEE----C-CSSSSCEEEE
T ss_pred hccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEc----c-CCCCcceEEE
Confidence 76 6677888877777788999999999999954321110 000 001122233333444 3 333 6777
Q ss_pred EeCCCeEEEEEcc
Q 003106 833 GCGDSSLSSFIAG 845 (847)
Q Consensus 833 Gs~DG~V~vW~~g 845 (847)
.+.+|.+.+|++.
T Consensus 406 ~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 406 VGKNNFCALYNLS 418 (420)
T ss_dssp EETTTEEEEEESC
T ss_pred EcCCceEEEEecc
Confidence 7788999999975
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=2.2e-26 Score=255.32 Aligned_cols=237 Identities=17% Similarity=0.153 Sum_probs=188.0
Q ss_pred CCCCcceEEEecCCCeEeecCC--CeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
+...+..++|+||++.++++.. .+|||+.+++...... +. ...+...|.+ .+.+++ +++.|+.|++||+.+
T Consensus 93 ~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~-~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK-FA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp CSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC-EE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe-ec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 3445788999999987766543 3899998876543221 11 1123334433 355555 678899999999997
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCC-CEEEEEeC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSM-PRLATSSF 700 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~-~~Lasgs~ 700 (847)
+ +.+..+.+|...|++++|++++. +|++++.|++|+|||+++++.+..+. .|...|++|+|+|++ .+|++|+.
T Consensus 171 ~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 171 K---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp T---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred C---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 7 67788899999999999999875 78999999999999999888766553 567789999999985 57899999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec--CCC
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM--NRP 778 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~--~~~ 778 (847)
|+.|+|||+++ +.++.++.+|...|++|+|+|++..+|++|+.|++|+|||+++++++..+ +|...|.++++. +..
T Consensus 248 d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 248 TGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp SSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTT
T ss_pred ccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCC
Confidence 99999999998 77889999999999999999998888889999999999999999887665 688899999986 456
Q ss_pred EEEEEcCCCcEEEEcCC
Q 003106 779 CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~ 795 (847)
.+++++.|+.|++|+..
T Consensus 326 ~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCeEEEEECC
Confidence 88899999999999954
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=1.3e-25 Score=248.72 Aligned_cols=235 Identities=17% Similarity=0.221 Sum_probs=191.3
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..++|+|+|..+++++.+ ++|++.................+...+. +.+.+++ +++.|++|++||+.++
T Consensus 107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 356789999999999998766 7899865422111111111111223333 2334443 6788999999999977
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 626 FSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+.+..+.+|...|.+++|++ ++++|++|+.||+|++||+++++++..+.+|...|++|+|+|++++|++|+.|++
T Consensus 187 ---~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 187 ---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp ---CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 56778899999999999988 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEE
Q 003106 704 VRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCL 780 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 780 (847)
|+|||++. ...+..+..+ ...+.+++|+|++. +|++|+.|++|+|||+.+++++..+.+|...|.++.+.. ...+
T Consensus 264 v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 264 CRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp EEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred EEEEECCC-CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence 99999997 5556666433 35789999999987 566999999999999999999999999999999998875 4578
Q ss_pred EEEcCCCcEEEEc
Q 003106 781 WDKLDAGDIQISD 793 (847)
Q Consensus 781 ~~~~~~g~i~i~d 793 (847)
.+++.++.|++|+
T Consensus 342 ~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 342 CSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEcCCCCEEecC
Confidence 8999999999995
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=3.8e-25 Score=239.73 Aligned_cols=273 Identities=13% Similarity=0.128 Sum_probs=205.4
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
.+..++|+|||+.+++.... .+|+..... . ......+...+. +.+.+++ +++ |+.+++||+.++.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--R----QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--E----EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcc--c----cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 45688999999998766533 223222111 1 111111222332 3344444 344 9999999999875
Q ss_pred eeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 627 SFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 627 ~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
....+..+. +|...|.+++|+|++++|++|+.|+.|++||+++++ ....+..|...|++++|+|++++|++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 555555555 899999999999999999999999999999999877 6677888999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
.|++||+++ +..+..+.+|...|.+++|+|++. +|++++.||.|++||+++++.+..+. +...+.++.+. +...++
T Consensus 164 ~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 164 NIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp CEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEE
T ss_pred cEEEEeCCC-CceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEE
Confidence 999999998 788889999999999999999987 55689999999999999999888875 44556777765 456788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+..++.|.+|+....... ... .+...+....| .+ ++.+|++++.||.|++|++.+
T Consensus 241 ~~~~~~~i~~~~~~~~~~~--~~~--~~~~~v~~~~~----~~-~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKY--QLH--LHESCVLSLKF----AY-CGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEETTSCEEEEETTSSCEE--EEC--CCSSCEEEEEE----CT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEcCCCcEEEEECCCCCeE--EEc--CCccceeEEEE----CC-CCCEEEEecCCCcEEEEECCC
Confidence 8889999999997643321 111 12222333333 34 678999999999999999754
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=6.6e-25 Score=246.74 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=206.8
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
....+.|++ ..+++.+ ..++||+.+++....+.. .....|.. .+.+++ ++..|+.|++||+.++
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~- 166 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ- 166 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-
Confidence 344566664 3444433 338999998876543221 12233332 344444 5677999999999876
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|...|.+++| ++++|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 167 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 167 --TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp --CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 567778899999999999 56799999999999999999 5677888999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
+||+++ +..+..+.+|...|.+++|+|++..++++++ .|+.|++||+++++++..+.. ...+.++.+.. ...++.
T Consensus 243 iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 243 IWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEE
T ss_pred EccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEE
Confidence 999998 7788889999999999999999988998876 799999999999999988874 44577777654 445555
Q ss_pred --EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 --KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 --~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+..++.|.+|+............ ..+...+....|+ + ++.+|++|+.||.|++|++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s----~-dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALS----P-DGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEEC----T-TSSEEEEECTTSEEEEEECCC
T ss_pred EeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEEC----C-CCCEEEEEeCCCcEEEEECCC
Confidence 44799999999653222211111 1122333333443 4 688999999999999999854
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.6e-26 Score=263.25 Aligned_cols=280 Identities=16% Similarity=0.146 Sum_probs=192.4
Q ss_pred CCCCcceEEEecC-CCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEE-eee-cCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTD-GAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLS-HDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~d-G~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s-~d~----t~~~d~~v~vwd 621 (847)
+...+.+++|+|. +..+++++ .++|||+.+.+....+. ...+...|.. .+. .++ +++.|++|++||
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3445789999995 55666654 34899998775433221 1123333333 233 233 688999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF 700 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~ 700 (847)
+.++ ....+.....+...|.+++|++++++|++|+.||.|+|||++ ++.+..+.+|...|++|+|+|++. +|++|+.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 194 FKGN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp TTSC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred ccCC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 9876 344444444556678999999999999999999999999987 456678889999999999999986 6789999
Q ss_pred CCcEEEEECCCCCc--eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce-------EEE
Q 003106 701 DKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC-------CWC 771 (847)
Q Consensus 701 Dg~V~iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~-------v~~ 771 (847)
|++|+|||+++... .+....+|...|++|+|+|++. +|++++.||+|+|||++++.+...+..+... +.+
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999987322 2233467999999999999988 5569999999999999999887776554321 111
Q ss_pred ----------EE--ecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccc-ccccccccCCCcEEEEEeCCCe
Q 003106 772 ----------VN--AMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAP-SWKVSCRSCRECCLYTGCGDSS 838 (847)
Q Consensus 772 ----------~~--~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~l~sGs~DG~ 838 (847)
+. .+....++.+..++.|++|+..... ........+...+... .|+ + ++.+|++|+ |+.
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fs----p-dg~~lasg~-d~~ 422 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFN----P-MGDTLASAM-GYH 422 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEEC----T-TSSCEEEEC-SSE
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEEC----C-CCCEEEEEc-CCc
Confidence 11 1222334444456679999865332 2222211122222222 232 3 577888876 889
Q ss_pred EEEEEccC
Q 003106 839 LSSFIAGT 846 (847)
Q Consensus 839 V~vW~~gt 846 (847)
|+||++..
T Consensus 423 i~iW~~~~ 430 (435)
T 4e54_B 423 ILIWSQQE 430 (435)
T ss_dssp EEECCCC-
T ss_pred EEEEECCc
Confidence 99999753
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=3.5e-26 Score=250.33 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=205.0
Q ss_pred CCCCcceEEEecCCCeEeecC-------CCeEEeCCCCchhhccccccccCCCCCceE-EeeecC---C----CCCCCCc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSP-------SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD---D----TDPRDAG 616 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~-------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d---~----t~~~d~~ 616 (847)
+...+..++|+|+|..+++.+ ..+|||+.+++....... + +...|. +.+.++ + +++.|+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----E-KAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----E-ESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----c-ccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 566788999999997665433 238999998765432110 1 122222 233333 2 5678999
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCc-eeEEEccCCC----CeEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHF------SSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSS----LITD 685 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~f------spdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~----~I~~ 685 (847)
|++||+.++. ..+..+.+|...|.+++| ++++++|++|+.||.|+|||+.+++ .+..+..|.. .|++
T Consensus 92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 9999999763 256778899999999955 6799999999999999999999876 7788876655 7999
Q ss_pred EE----EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCce
Q 003106 686 VR----FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 686 v~----fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp---~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
++ |++++++|++++.||.|++||+++ +.. .....|...|.+++|+| ++. +|++++.||.|++||++++++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEET
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCc
Confidence 98 788999999999999999999998 444 44467889999999999 766 566899999999999998766
Q ss_pred EEEEe-----eCCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccce-----------------eeecccccCCCCcc
Q 003106 759 TRVFK-----VESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINAN-----------------IFCGLGWYGSDEIP 814 (847)
Q Consensus 759 ~~~~~-----~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~~ 814 (847)
+..+. .+...+.++.+.... .++++..+|.|++|+....... ..... ..+...+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v- 324 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPI- 324 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCE-
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCCCe-
Confidence 55544 888899999887654 5889999999999995432211 11111 1122233
Q ss_pred ccccccccccCCCcEEE-EEeCCCeEEEEEccC
Q 003106 815 APSWKVSCRSCRECCLY-TGCGDSSLSSFIAGT 846 (847)
Q Consensus 815 ~~~w~~~~~~~~~~~l~-sGs~DG~V~vW~~gt 846 (847)
+.+.+.+ ++.+|+ +|+.||.|+||++.+
T Consensus 325 ---~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 325 ---SSLDWSP-DKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp ---EEEEECS-SSTTEEEEEETTSEEEEEEECC
T ss_pred ---eEEEEcC-CCCeEEEEecCCCcEEEEECCC
Confidence 3344445 445555 899999999999875
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=3.8e-25 Score=241.14 Aligned_cols=224 Identities=19% Similarity=0.243 Sum_probs=185.8
Q ss_pred CCCCCCcEEEEeccCCc--eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.... ...++..+.+|...|.+++|++|+++|++|+.|++|+|||+.+++.+..+.+|...|++|+
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 67889999999987531 2346778999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-----eEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-----DLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-----~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
|+|++.+|++|+.|++|+|||++. .++..+.+|...|.+++|.|... .+|++++.|++|++||++++++...+
T Consensus 115 ~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 115 IDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 999999999999999999999974 67888999999999999998633 36779999999999999999999999
Q ss_pred eeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 763 KVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 763 ~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
.+|...|.++.+... ..++++..++.|++||....... .... .... ++.+.+.+ ++.+|++++.+ .|++
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~~~~----v~~~~~sp-~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLS--AQDE----VFSLAFSP-NRYWLAAATAT-GIKV 262 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE--EEEE--CCSC----EEEEEECS-SSSEEEEEETT-EEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEec--CCCc----EEEEEEcC-CCCEEEEEcCC-CcEE
Confidence 999999999988754 57889999999999997643221 1111 1222 33444444 56777777755 5999
Q ss_pred EEcc
Q 003106 842 FIAG 845 (847)
Q Consensus 842 W~~g 845 (847)
|++.
T Consensus 263 ~~~~ 266 (319)
T 3frx_A 263 FSLD 266 (319)
T ss_dssp EEET
T ss_pred EEeC
Confidence 9864
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=4.9e-25 Score=251.10 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=209.1
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEE
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANS 633 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~ 633 (847)
++.++|.++++++.+ ++||+.+++....+. .+...|......+. +++.|+.|++||+.++ +.+..
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~ 194 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG---ECIHT 194 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc------CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC---cEEEE
Confidence 567788888876655 899999887654432 13333443322233 6788999999999977 67778
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~ 713 (847)
+.+|...|.+++|+ +++|++|+.||+|++||+.+++.+..+.+|...|++++| ++++|++|+.||.|++||+++ +
T Consensus 195 ~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~ 269 (445)
T 2ovr_B 195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-E 269 (445)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-T
T ss_pred ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-C
Confidence 89999999999995 678999999999999999999999999999999999999 688999999999999999998 7
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.++..+.+|...|.+++| ++. ++++++.||.|++||+++++++..+..+...+.++.+.+ ..++++..+|.|.+||
T Consensus 270 ~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWD 345 (445)
T ss_dssp EEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEE
T ss_pred cEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEE
Confidence 888999999999999999 444 567999999999999999999999999999898888754 5888999999999999
Q ss_pred CCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 794 SLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
...............+...+....| ++.+|++|+.||.|++|++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTT
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCC
Confidence 7543221111111112222222222 367999999999999999864
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=259.22 Aligned_cols=292 Identities=11% Similarity=0.108 Sum_probs=208.5
Q ss_pred CCCCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vw 620 (847)
..|...+..++|++ ||.++++++.+ +|||+.+.+........... .+...|.. .+.+++ +++.|+.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 34566889999999 99999887765 89998762211111111111 13333433 334444 67889999999
Q ss_pred ecc---CCceee-----EeEEee--c--CCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeE
Q 003106 621 DVS---QGFSFK-----EANSVR--A--STSKVICCH--FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLIT 684 (847)
Q Consensus 621 d~~---~~~~~~-----~~~~l~--~--h~~~V~~l~--fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~ 684 (847)
|+. ++.... .+..+. . +...+.++. +++++.+|++|+.|+.|++||+++++.+..+.+ |...|+
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 995 332111 222222 2 677788888 668999999999999999999999999999988 899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-cCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+++|+|++++|++|+.||+|+|||+++ +.++..+. .|...|++++|+|. ...+|++++.||.|+|||+++++++.
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999998 77788775 78889999977763 23477799999999999999999998
Q ss_pred EEeeC--------------------------CceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc--------
Q 003106 761 VFKVE--------------------------SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG-------- 806 (847)
Q Consensus 761 ~~~~~--------------------------~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-------- 806 (847)
.+..+ ...|.++.+.+...++++..++.|++|+.............
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 377 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI 377 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEE
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEE
Confidence 88754 23466677776678899999999999996543322111100
Q ss_pred ----------------c------cCCCCccccccccccccC-CCcEEEEEeCCCeEEEEE
Q 003106 807 ----------------W------YGSDEIPAPSWKVSCRSC-RECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 807 ----------------~------~~~~~~~~~~w~~~~~~~-~~~~l~sGs~DG~V~vW~ 843 (847)
. .........+..+.+.+. +..+|++|+.||.|+||.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 378 PTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0 000001122233333332 367999999999999995
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-25 Score=245.08 Aligned_cols=228 Identities=18% Similarity=0.189 Sum_probs=180.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~f 688 (847)
.|+.|++||+... ..+.+..+.+|...|++++|+++ +++|++|+.||.|+|||+.+++ .+..+..|...|++++|
T Consensus 31 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 31 SDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109 (379)
T ss_dssp TTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred CCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence 3556777777654 55677888999999999999987 9999999999999999999887 77788889999999999
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEec-------------CCCeEEEEEeCCCcEEEEE
Q 003106 689 SPS--MPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHP-------------NKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 689 sp~--~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp-------------~g~~ll~s~s~Dg~V~iWD 752 (847)
+|+ +.+|++++.|+.|++||+++.. .....+.+|...|++++|+| ++. +|++++.||.|++||
T Consensus 110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK 188 (379)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEE
T ss_pred CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEE
Confidence 999 9999999999999999998742 34556778999999999999 455 677999999999999
Q ss_pred CCCCc----eEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 753 INNGS----CTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 753 ~~~~~----~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
++++. ++..+..|...|.++.+... ..++++..++.|++|+............... ......++.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--EKFPDVLWRASWSL 266 (379)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS--SCCSSCEEEEEECS
T ss_pred ecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc--ccCCCcEEEEEEcC
Confidence 98764 45677788889999988764 5788899999999999664322111111111 11122234444444
Q ss_pred CCCcEEEEEeCCCeEEEEEcc
Q 003106 825 CRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~g 845 (847)
++.+|++++.||.|++|++.
T Consensus 267 -~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 267 -SGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -SSCCEEEEESSSSEEEEEEE
T ss_pred -CCCEEEEecCCCcEEEEeCC
Confidence 67789999999999999975
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=2.7e-25 Score=249.57 Aligned_cols=230 Identities=20% Similarity=0.291 Sum_probs=188.4
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
.+..++|+|||+++++++.+ +|||+.+++....+. .+...|.. .+.+++ +++.|++|++||+.++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~- 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG- 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-
Confidence 46789999999999886654 899999876544322 12333332 344444 6788999999999987
Q ss_pred eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE-------ccCCCCeEEEEEcCCCCEEEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l-------~~h~~~I~~v~fsp~~~~Lasg 698 (847)
+....+. +...|.+++|+| ++++|++|+.|++|+|||+++++.+..+ .+|...|++|+|+|++++|++|
T Consensus 198 --~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 198 --QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp --EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 3344443 667899999999 9999999999999999999999888776 5799999999999999999999
Q ss_pred eCCCcEEEEECCCC-----------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 699 SFDKTVRVWDADNP-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 699 s~Dg~V~iWD~~~~-----------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|++|+|||+++. +.+...+.+|...|.+++|++++. +|++|+.|+.|++||+++++++..+.+|..
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 99999999999752 235667889999999999999987 566999999999999999999999999999
Q ss_pred eEEEEEecC-------CCEEEEEcCCCcEEEEcCC
Q 003106 768 CCWCVNAMN-------RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 768 ~v~~~~~~~-------~~~l~~~~~~g~i~i~d~~ 795 (847)
.|.++.+.. ...+++++.++.|++|+..
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999998764 4578899999999999843
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=6.7e-25 Score=250.83 Aligned_cols=263 Identities=17% Similarity=0.246 Sum_probs=208.3
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC---CCCCCCcEEEEeccCCceeeEeE
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSFKEAN 632 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~---t~~~d~~v~vwd~~~~~~~~~~~ 632 (847)
++..++.++++++.+ ++||+.+++....+. .+...|... +.+++ +++.|++|++||+.++ +.+.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~ 197 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS------GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG---CCTH 197 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT---EEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe------CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC---cEEE
Confidence 344567777776544 899999887655432 233334333 33443 7788999999999977 5777
Q ss_pred EeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCce-----------------------eEEEccCCCCeEEEE
Q 003106 633 SVRASTSKVICCHFS--SDGKLLATGGHDKKAVLWHTDTLKS-----------------------KTNLEEHSSLITDVR 687 (847)
Q Consensus 633 ~l~~h~~~V~~l~fs--pdg~~Lasgs~Dg~V~vwd~~~~~~-----------------------~~~l~~h~~~I~~v~ 687 (847)
.+.+|...|.+++|+ +++++|++|+.|++|++||+.++.. +..+.+|...|.++
T Consensus 198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV- 276 (464)
T ss_dssp EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-
T ss_pred EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-
Confidence 889999999999999 5789999999999999999987652 55677899999887
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
++++++|++|+.||+|++||+++ +.++..+.+|...|++++|+|++. +|++|+.||.|++||+++++++..+..|..
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~ 353 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTA 353 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred -cCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Confidence 56688999999999999999998 788999999999999999999988 556999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.++.+. ...+++++.+|.|++|+........... .........|. .++.+|++|+ ||.|++|++.+
T Consensus 354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 354 LVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTT
T ss_pred cEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCC
Confidence 99999886 5788999999999999976433222211 12222222232 2577888888 99999999854
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=1.7e-25 Score=249.32 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=211.0
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecC--------C---CCCCC
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD--------D---TDPRD 614 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d--------~---t~~~d 614 (847)
..|...+..++|++ ..+++++.+ ++||+.+.+....+........+...|. +.+.++ . +++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35666788999988 666665544 8999998872211111111112222232 223332 2 56779
Q ss_pred CcEEEEeccCCce--eeEeEEeecC-----CCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CceeE--
Q 003106 615 AGGRGMDVSQGFS--FKEANSVRAS-----TSKVICCHFS----SDGKL-LATGGHDKKAVLWHTDT------LKSKT-- 674 (847)
Q Consensus 615 ~~v~vwd~~~~~~--~~~~~~l~~h-----~~~V~~l~fs----pdg~~-Lasgs~Dg~V~vwd~~~------~~~~~-- 674 (847)
+.|++||+.++.. ...+..+..| ...|.+++|+ +++++ |++|+.||.|++||+.+ ++.+.
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 9999999987632 1115667778 5999999999 99999 99999999999999998 66666
Q ss_pred ---EE-------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc---C---CCCeEEEEEecCCCeE
Q 003106 675 ---NL-------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---H---SASVMSLDFHPNKDDL 738 (847)
Q Consensus 675 ---~l-------~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~---h---~~~V~sl~fsp~g~~l 738 (847)
.+ ..|...|++++|+|++ +|++++.||.|++||+++ +..+..+.. | ...|.+++|+|++. +
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~ 247 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGS-L 247 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTT-E
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCC-E
Confidence 77 4488999999999999 999999999999999998 788888888 9 99999999999987 5
Q ss_pred EEEEeCC---CcEEEEECCCCceEEEEee-------------CCceEEEEEec-CCCEEEEEcCCCcEEEEcCCccccee
Q 003106 739 ICSCDGD---GEIRYWSINNGSCTRVFKV-------------ESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 739 l~s~s~D---g~V~iWD~~~~~~~~~~~~-------------~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
|++++.| |.|++||+++++++..+.. +...+.++.+. +...++++..++.|++|+........
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 5688889 9999999999999999998 88889999886 45678889999999999975432222
Q ss_pred eecccc---cC---------------CCCccccccccccccCCC----------cEEEEEeCCCeEEEEEccC
Q 003106 802 FCGLGW---YG---------------SDEIPAPSWKVSCRSCRE----------CCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 802 ~~~~~~---~~---------------~~~~~~~~w~~~~~~~~~----------~~l~sGs~DG~V~vW~~gt 846 (847)
...... .+ ...+.. +.+.+ ++ .+|++|+.||.|+||++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~----~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----VKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE----EEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEecccCcccchhhhhccccccccccCCceeE----EEecc-ccccccccccccceEEEecCCCcEEEEEcCC
Confidence 111000 11 233333 34334 33 7999999999999999864
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-25 Score=235.45 Aligned_cols=271 Identities=17% Similarity=0.268 Sum_probs=214.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++| +++..+++++.+ ++||+.+......+.. +...+. +.+.+++ +++.|+.+++|++
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 45567888999 899988887655 8999987765443221 122232 3344444 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
......+.+..+.+|...|.+++| ++++|++|+.|+.|++|| .++.+..+..|...|.+++|++ ++++|++++.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 887666778888999999999999 678999999999999999 6788888999999999999998 89999999999
Q ss_pred CcEEEEECCCCCceEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 702 KTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
|.|++||. ...+..+.. |...|.+++|+|++. +++++.||.|++||+++++++..+..+...+.++.+.....+
T Consensus 165 ~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l 239 (313)
T 3odt_A 165 KTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI 239 (313)
T ss_dssp SCEEEEET---TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCE
T ss_pred CCEEEEec---CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCE
Confidence 99999994 456677776 999999999999976 569999999999999999999999999999999998877789
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+++..++.|++|+........ ... .+... ++.+.+.+ ++. +++++.||.|++|++.+
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~--~~~-~~~~~----i~~~~~~~-~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQ--VIT-LPAIS----IWSVDCMS-NGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEE--EEE-CSSSC----EEEEEECT-TSC-EEEEETTSCEEEEESCG
T ss_pred EEEecCCEEEEEECCCCceeE--EEe-ccCce----EEEEEEcc-CCC-EEEEeCCCcEEEEeCCC
Confidence 999999999999965432211 111 11222 33344334 334 77899999999999854
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=3.4e-25 Score=251.90 Aligned_cols=262 Identities=19% Similarity=0.319 Sum_probs=205.4
Q ss_pred eEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEe
Q 003106 558 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEA 631 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~ 631 (847)
..++..||..+++++.+ ++||+.+++....+. .+...|.++...+. +++.|+.|++||+.++ +.+
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~---~~~ 206 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT------GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG---EML 206 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC------CCSSCEEEEECCSSEEEEEETTSCEEEEESSSC---CEE
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc------CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC---cEE
Confidence 44666688888876544 899999887654432 13334444333222 6788999999999987 567
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~---~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
..+.+|...|.+++|+ +.+|++|+.||+|++||+.++..+ ..+.+|...|++++| ++++|++|+.||+|++||
T Consensus 207 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 7888999999999997 459999999999999999987655 677899999999999 688999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCc
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
+++ +..+..+.+|...|.++.|+. . ++++|+.||.|++||+++++++..+..|...+.++.+ +...+++++.+|.
T Consensus 283 ~~~-~~~~~~~~~~~~~v~~~~~~~--~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TST-CEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGK 357 (435)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred CCc-CcEEEEEcCCCCcEEEEEeCC--C-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCc
Confidence 998 788999999999999999963 3 6779999999999999999999999999999999998 6678999999999
Q ss_pred EEEEcCCcccce-------eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 789 IQISDSLFINAN-------IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 789 i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|++||....... ...... .+...+....| ++.+|++|+.||+|++|++.
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE-------CSSCEEECCSSSEEEEEC--
T ss_pred EEEEECCCCCCccccccchheeecc-CCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECC
Confidence 999995322110 111111 12222222222 46789999999999999974
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=2.1e-24 Score=244.36 Aligned_cols=272 Identities=15% Similarity=0.228 Sum_probs=209.3
Q ss_pred cceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
...+.||+++ .+++ ++.++|||+.++++...+. .......|. +-+++++ +++.|+.|++||+.++
T Consensus 108 ~~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEE----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---
T ss_pred ceeEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEE----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---
Confidence 4678999865 3433 3345999999987654322 122333343 3355665 6889999999999977
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+.+..+.+|...|.+++|+ +.+|++|+.|+.|++||... ...+.++.+|...|.++.|++++++|++++.|+.|+||
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 6778889999999999885 67999999999999999885 45667889999999999999999999999999999999
Q ss_pred ECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEE--eCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSC--DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 708 D~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
|+.+.. ..+..+..|...|.+++|+|++..+++++ +.|++|+|||+++++++..+..+...+..+.......++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence 998632 24567788999999999999988888765 4799999999999999999988877666665556666655
Q ss_pred Ec--CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 783 KL--DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 783 ~~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+. .++.|++|+...... +..+. .+... ++.+.+.+ ++.+|+||+.||+|+||++.
T Consensus 338 ~sg~~d~~I~iwd~~~~~~--v~~l~-gH~~~----V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAK--VAELK-GHTSR----VLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EECTTTCCEEEEETTTCCE--EEEEC-CCSSC----EEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EEecCCCEEEEEECCCCcE--EEEEc-CCCCC----EEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 43 789999999754322 22211 12223 34444444 67899999999999999974
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=3.1e-25 Score=246.96 Aligned_cols=283 Identities=10% Similarity=0.001 Sum_probs=196.2
Q ss_pred CCCcceEEEecCCCeEeecCC----------CeEEeCCCCchhhc--ccccc--ccCCCCCceEEe---------eecCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS----------NQLWDDKDLELRAD--MDRLV--EDGSLDDNVESF---------LSHDD 609 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~----------~~iWD~~~~~~~~~--~~~~~--~~g~~d~~v~~~---------~s~d~ 609 (847)
+-++.+++|+|||+.+++++. .++|++........ +.... .-...+..+.++ -..+.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 346889999999999988642 37899876543211 11100 000111112111 11111
Q ss_pred -----CCCCCCcEEEEeccCCc-eeeEeEEe-----ecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEE
Q 003106 610 -----TDPRDAGGRGMDVSQGF-SFKEANSV-----RASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 -----t~~~d~~v~vwd~~~~~-~~~~~~~l-----~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l 676 (847)
++..|+.+|+|++.+.. ..+.+... ..+...+++|+|+|||++|++++ .|++|+|||+++++.+..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 46678999999987652 22333222 24556799999999999987554 7899999999999999888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCC----cEEEE
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYW 751 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg----~V~iW 751 (847)
. |...|++|+|+|+|++|++++.| .+++|+..+..... ....+|...|.+|+|+|++.. +++++.|+ .|++|
T Consensus 174 ~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 E-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKI 250 (365)
T ss_dssp E-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEE
T ss_pred C-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeec
Confidence 5 77889999999999999999855 56667666633333 334578889999999999875 45777676 68899
Q ss_pred ECCCCce----EEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 752 SINNGSC----TRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 752 D~~~~~~----~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|+..+.. ...+..+...|.++++..+ ..+.+++.++.|++||..... .+..+...+...++...|+ + +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fS----p-d 323 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTIS----P-D 323 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEEC----T-T
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEEC----C-C
Confidence 9987653 3456778888999988754 467789999999999976432 2222222233444444444 4 7
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++||.|++||||++-
T Consensus 324 g~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 324 STYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SCEEEEEETTSEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEEcC
Confidence 8999999999999999983
No 58
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=8.1e-26 Score=252.73 Aligned_cols=231 Identities=18% Similarity=0.250 Sum_probs=185.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~ 682 (847)
+++.|++|++||+.++ +....+..|...|.+++|+|++++|++|+.|+.|+|||+.+. .....+.+|.+.
T Consensus 83 s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 83 SASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159 (380)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred EEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc
Confidence 6778999999999877 567788999999999999999999999999999999998743 244567899999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-C
Q 003106 683 ITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N 755 (847)
Q Consensus 683 I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~ 755 (847)
|.++.|+|++ ..|++|+.|++|++||+++ +..+..+ .+|...|.+++|++....+|++|+.|++|++||++ .
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999974 5799999999999999998 6777766 67999999999988555688899999999999998 5
Q ss_pred CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 756 GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+.++..+.+|...|.++.+.. ...+++++.++.|++||.......................++.+.+.+ ++.+|++|+
T Consensus 239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~ 317 (380)
T 3iz6_a 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGY 317 (380)
T ss_dssp CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEEC
T ss_pred CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEE
Confidence 578899999999999998875 457889999999999997643322211111111111111223333344 688999999
Q ss_pred CCCeEEEEEcc
Q 003106 835 GDSSLSSFIAG 845 (847)
Q Consensus 835 ~DG~V~vW~~g 845 (847)
.||.|++||+.
T Consensus 318 ~dg~i~vwd~~ 328 (380)
T 3iz6_a 318 SNGDCYVWDTL 328 (380)
T ss_dssp TTSCEEEEETT
T ss_pred CCCCEEEEECC
Confidence 99999999964
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=1.4e-24 Score=238.80 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=179.6
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~ 685 (847)
+++.|++|++||+.... .......+.+|...|++++|+|++.+|++|+.|++|+|||+++++.+..+.+|...|++
T Consensus 44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 123 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS 123 (343)
T ss_dssp EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence 67789999999987642 23456778999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCC---------eEEEEEeCCCcEEEEEC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSI 753 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~---------~ll~s~s~Dg~V~iWD~ 753 (847)
|+|+|++++|++++.|++|+|||+.. .....+. +|...|.+++|+|++. .+|++++.|+.|++||
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd- 200 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN- 200 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-
Confidence 99999999999999999999999984 3333333 7889999999999872 4678999999999999
Q ss_pred CCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE
Q 003106 754 NNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832 (847)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s 832 (847)
..+.+...+..|...|.++.+.. ...+++++.++.|++||.......... .. .... ++.+.+.+ ++.+++
T Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~--~~~~----v~~v~~sp-~~~~la- 271 (343)
T 2xzm_R 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE-FD--AGST----INQIAFNP-KLQWVA- 271 (343)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE-EE--CSSC----EEEEEECS-SSCEEE-
T ss_pred CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee-ec--CCCc----EEEEEECC-CCCEEE-
Confidence 45677888999999999998875 457889999999999996322211111 10 1112 33444444 355555
Q ss_pred EeCCCeEEEEEccC
Q 003106 833 GCGDSSLSSFIAGT 846 (847)
Q Consensus 833 Gs~DG~V~vW~~gt 846 (847)
++.|+.|++|++.+
T Consensus 272 ~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 272 VGTDQGVKIFNLMT 285 (343)
T ss_dssp EEESSCEEEEESSS
T ss_pred EECCCCEEEEEeCC
Confidence 55688899999754
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.94 E-value=1e-24 Score=257.27 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=218.5
Q ss_pred cCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCC----chhhccccccccCCCCCc-eE-Eeeec--CC----CCCC
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDL----ELRADMDRLVEDGSLDDN-VE-SFLSH--DD----TDPR 613 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~----~~~~~~~~~~~~g~~d~~-v~-~~~s~--d~----t~~~ 613 (847)
.+..+...+..++|+|||++++++... .+||+.++ +....+. .+... |. +.+.+ ++ +++.
T Consensus 13 ~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~ 86 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDE 86 (615)
T ss_dssp CCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEET
T ss_pred CCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecC
Confidence 344555677889999999988776644 88999977 4333221 12333 33 33555 55 6778
Q ss_pred CCcEEEEeccCCc-----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeE
Q 003106 614 DAGGRGMDVSQGF-----SFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 614 d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
|+.|++||+.++. ..+.+..+..|...|.+++|+|++++|++++.| +.|++|| .++.+..+.+|...|+
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999997441 235677788999999999999999999999988 6788887 6778889999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCC---CeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCceE
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSA---SVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~---~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
+++|+|+++ .|++++.|+.|++||+++ +..+..+.+|.. .|++++|+|+ +. +|++++.||.|++||+++++++
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEe
Confidence 999999998 899999999999999998 788889999999 9999999999 76 5669999999999999999999
Q ss_pred EEE-e---eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC
Q 003106 760 RVF-K---VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 760 ~~~-~---~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
..+ . .+...+.++.+.+...++++..++.|++|+....... ...... ..........+.+. ++.++++|+.
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~ 317 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--QKWTLD-KQQLGNQQVGVVAT--GNGRIISLSL 317 (615)
T ss_dssp EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE--EEEECC-TTCGGGCEEEEEEE--ETTEEEEEET
T ss_pred EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE--EEEcCC-CCcccCceeEEEeC--CCCeEEEEEC
Confidence 999 6 7888899888876668889999999999997643221 111111 01111112222221 5778999999
Q ss_pred CCeEEEEEcc
Q 003106 836 DSSLSSFIAG 845 (847)
Q Consensus 836 DG~V~vW~~g 845 (847)
||.|++|++.
T Consensus 318 ~g~i~~~d~~ 327 (615)
T 1pgu_A 318 DGTLNFYELG 327 (615)
T ss_dssp TSCEEEEETT
T ss_pred CCCEEEEECC
Confidence 9999999875
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=1.8e-24 Score=241.04 Aligned_cols=283 Identities=19% Similarity=0.179 Sum_probs=208.5
Q ss_pred CCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhcccccc-------ccCCCCCceEEe-eec-CC----CCCCC
Q 003106 552 GTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLV-------EDGSLDDNVESF-LSH-DD----TDPRD 614 (847)
Q Consensus 552 ~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~-------~~g~~d~~v~~~-~s~-d~----t~~~d 614 (847)
|...+..++|+| +|.++++++.+ ++||+.++.....+.... ....+...|... +.+ ++ +++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 566788999999 99998886544 899999876654432110 001233334332 333 33 66789
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.|++||+.++ +.+..+. +...+.+++|++. +.+|++|+.|+.|++||+++++.+..+..|...|++++|+|+
T Consensus 122 ~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 122 KTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp SEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred CeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 99999999987 3444443 7888999999994 459999999999999999999999999999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCCCCceEEEe---------------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 692 MP-RLATSSFDKTVRVWDADNPGYSLRTF---------------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 692 ~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~---------------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
++ .|++++.||.|++||+++...++..+ .+|...|++++|+|++. +|++++.||.|++||+++
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCC
Confidence 98 58999999999999999855556655 57889999999999987 556999999999999999
Q ss_pred CceEEEEeeC------CceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 756 GSCTRVFKVE------SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 756 ~~~~~~~~~~------~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
++....+..+ ..............++.+..++.|.+|+...... ...+. .+...+....|+ + ++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~-~~~~~v~~~~~s----~-~~~~ 348 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--ITMLK-GHYKTVDCCVFQ----S-NFQE 348 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE--EEEEC-CCSSCEEEEEEE----T-TTTE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc--eeeec-cCCCeEEEEEEc----C-CCCE
Confidence 8766544322 1122233344556677778889999999654322 22211 122333333343 4 6789
Q ss_pred EEEEeCCCeEEEEEccCC
Q 003106 830 LYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 830 l~sGs~DG~V~vW~~gty 847 (847)
|++|+.||.|++|++.++
T Consensus 349 l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTSCEEEEEECC-
T ss_pred EEEECCCCeEEEEeCCCC
Confidence 999999999999998753
No 62
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=2.1e-24 Score=253.38 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=210.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||..+++.+.+ ++||.... ....+. .+...+. +.+.+++ +++.|+.+++||+.
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~~~~------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLT------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEEEEe------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 44567889999999998876544 89996532 222111 1222232 3344444 57789999999986
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||. +++.+..+.+|...|++|+|+|++++|++++.|++
T Consensus 334 ~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 334 GQ----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp SC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CC----eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 54 55677899999999999999999999999999999995 57888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 782 (847)
|+|||.. +..+..+.+|...|++++|+|++. +|++++.|++|++||+ +++++..+..|...+.++.+..+ ..+.+
T Consensus 409 v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 409 VKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEECTT--CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEeCC--CCEEEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999964 577888999999999999999987 5669999999999996 57788899999999999988754 56778
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+..++.|++|+... .....+. .+...+....|+ + ++.+|++|+.||.|+||+.
T Consensus 485 ~~~d~~i~iw~~~~---~~~~~~~-~h~~~v~~l~~s----~-dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 485 ASDDKTVKLWNRNG---QLLQTLT-GHSSSVRGVAFS----P-DGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EETTSEEEEEETTS---CEEEEEE-CCSSCEEEEEEC----T-TSSCEEEEETTSEEEEECT
T ss_pred EeCCCEEEEEcCCC---CEEEEEe-CCCCCEEEEEEc----C-CCCEEEEEECcCEEEEEeC
Confidence 88999999999532 1121111 123333443333 3 6788999999999999985
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-25 Score=261.67 Aligned_cols=229 Identities=10% Similarity=0.045 Sum_probs=166.8
Q ss_pred EecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecC------C----CCCCCCcEEEEeccCCc
Q 003106 561 FGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD------D----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 561 ~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d------~----t~~~d~~v~vwd~~~~~ 626 (847)
.+|++..+++++.+ +|||+.+++........+. + ..+.|. +.+.++ + +++.|++|++||+.++.
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~-~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-H-SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEE-E-CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-e-cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 35666666655544 8999977654211111011 1 111222 223332 1 56789999999998763
Q ss_pred ee--------eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEE--EEcCCC-CE
Q 003106 627 SF--------KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDV--RFSPSM-PR 694 (847)
Q Consensus 627 ~~--------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v--~fsp~~-~~ 694 (847)
.. ++..++.+|...|+||+|+++ ..|++|+.||+|+|||++++ .+...+.+|...|++| +|++++ .+
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeE
Confidence 11 234578899999999999986 48999999999999999976 4456788999999999 578887 89
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
||||+.|++|+|||+++ ..++.++.+|.. .|.+|+|+|++.. |++++.|++|++||++++.++..+.+|...|+++
T Consensus 326 laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI 403 (524)
T ss_dssp EEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred EEEeccCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence 99999999999999997 566666667653 5889999999875 5688899999999999999999999999999999
Q ss_pred EecCC-CEEEEEcCCCcEEEEcC
Q 003106 773 NAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 773 ~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
++... ..+++++.++.|++|+.
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBS
T ss_pred EeCCCCCeEEEEECCCEEEEEec
Confidence 88754 46789999999999983
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=8.4e-25 Score=245.67 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=180.0
Q ss_pred CCCCCCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~ 680 (847)
+++.++.|++||+...... +.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 4577899999999664222 34566789999999999999 9999999999999999999987 6788899999
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEe--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 681 SLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 681 ~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..|++|+|+|++ ++|++++.||+|+|||+++ +..+..+ .+|...|++++|+|++. +|++++.||.|+|||+++++
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCc
Confidence 999999999998 6999999999999999998 7788888 88999999999999987 45589999999999999999
Q ss_pred eEEEE-eeCCce-EEEEEecCCCE-EEEE---cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE-
Q 003106 758 CTRVF-KVESFC-CWCVNAMNRPC-LWDK---LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL- 830 (847)
Q Consensus 758 ~~~~~-~~~~~~-v~~~~~~~~~~-l~~~---~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l- 830 (847)
++..+ ..+... +.++.+..... ++++ ..++.|.+||........... ...+...+....| .+ ++.+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~----s~-~~~~l~ 283 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFF----DP-DTNIVY 283 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEE----ET-TTTEEE
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEEE----cC-CCCEEE
Confidence 99988 566654 66666665554 4455 589999999976433211111 1112222333333 34 45555
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||.|++|++.+
T Consensus 284 ~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITS 299 (402)
T ss_dssp EEETTCSCEEEEEECS
T ss_pred EEEcCCCeEEEEEecC
Confidence 5677899999999864
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=1.1e-24 Score=234.84 Aligned_cols=208 Identities=16% Similarity=0.157 Sum_probs=166.3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iW 707 (847)
..+.+|.+.|++++|+++|++||+|+.|++|+|||+.. .+.+.++.+|.+.|++|+|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 4678899999999999999874 8899999999999999
Q ss_pred ECCCCC-ceEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecCC-----
Q 003106 708 DADNPG-YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMNR----- 777 (847)
Q Consensus 708 D~~~~~-~~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~~----- 777 (847)
|+++.. ..+..+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+..|...|.++.+...
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 998732 356778889999999999997 55 67799999999999998763 24667788888988887653
Q ss_pred ---------CEEEEEcCCCcEEEEcCCcccce--eeecccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEc
Q 003106 778 ---------PCLWDKLDAGDIQISDSLFINAN--IFCGLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 778 ---------~~l~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~ 844 (847)
..++++..++.|++|+....... ....+ ..+...+....| .+.. +.+|++|+.||+|+||++
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~----sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAW----SPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEE----CCCCCCceEEEEEECCCcEEEEEe
Confidence 47889999999999986432211 11111 112333344344 4432 578999999999999997
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
.
T Consensus 237 ~ 237 (297)
T 2pm7_B 237 D 237 (297)
T ss_dssp S
T ss_pred C
Confidence 5
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=5e-24 Score=242.70 Aligned_cols=271 Identities=18% Similarity=0.344 Sum_probs=213.8
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
+...+..+.|+ +..+++++.+ ++||+.+++....+. .+...+.++...+. +++.|+.|++||+.++
T Consensus 158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY------GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC------CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC
Confidence 33455667776 5566665544 899999886654432 12333444333333 6788999999999976
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|...|.+++| ++++|++|+.||.|++||+++++.+.++.+|...|++++| ++.+|++++.||+|+
T Consensus 230 ---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 230 ---QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp ---CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred ---cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 567788899999999999 7889999999999999999999999999999999999999 788999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceEEEEEecCCCEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v~~~~~~~~~~l~~ 782 (847)
+||+++ +..+..+.+|...|.++.++++ +|++++.||.|++||+++++++..+.. +...|.++.+. ...+++
T Consensus 303 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s 377 (445)
T 2ovr_B 303 VWDVET-GNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVIT 377 (445)
T ss_dssp EEETTT-CCEEEEECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEE
T ss_pred EEECCC-CCEEEEEcCCcccEEEEEEeCC---EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-CCEEEE
Confidence 999998 7888999999999999998643 677999999999999999999999986 77789999885 578889
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe----EEEEEcc
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS----LSSFIAG 845 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~----V~vW~~g 845 (847)
++.+|.|++|+...... ...............+|.+.+.+ ++.++++|+.||+ |.||+..
T Consensus 378 ~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred EeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence 99999999999664322 22221111122334456666655 6789999999998 9999975
No 67
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=248.49 Aligned_cols=256 Identities=11% Similarity=0.131 Sum_probs=183.1
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceee
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~ 629 (847)
...+..++|+|||.++++++.+ +|||+.++...... ....++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-----------------------------------~~~~~~ 72 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-----------------------------------SRGEYN 72 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-----------------------------------CCCCEE
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-----------------------------------ccccee
Confidence 4567889999999988776544 66776654321100 001334
Q ss_pred EeEEeecCC------------CCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcee----------------------
Q 003106 630 EANSVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK---------------------- 673 (847)
Q Consensus 630 ~~~~l~~h~------------~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~---------------------- 673 (847)
....+.+|. ..|++++|+|++ .+|++|+.|++|+|||+.++...
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 566777887 889999999998 89999999999999998764331
Q ss_pred -----------------EE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-------EeccCCCCeEE
Q 003106 674 -----------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMS 728 (847)
Q Consensus 674 -----------------~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-------~~~~h~~~V~s 728 (847)
.. +.+|...|++++|+|++++|++| .|++|+|||+++.+..+. .+.+|...|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 12 36799999999999999999998 799999999995344444 25689999999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCce----EEEEeeCCc------------eEEEEEecCCC-EEEEEcCCCcEEE
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKVESF------------CCWCVNAMNRP-CLWDKLDAGDIQI 791 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~----~~~~~~~~~------------~v~~~~~~~~~-~l~~~~~~g~i~i 791 (847)
++|+|++..+|++|+.||+|++||+++++. +..+..+.. .|.++.+.... .++++.. +.|++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 999999855788999999999999999887 788888775 78888887654 5566666 99999
Q ss_pred EcCCcccceeeecccccCCCC---------ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 792 SDSLFINANIFCGLGWYGSDE---------IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~---------~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
||.......+....++..... .....+.+.+.+ ++.+|++|+.||.|+||++.+
T Consensus 311 wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp EETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTT
T ss_pred EeCCCCccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCC
Confidence 997641111111111110000 000011123334 678899999999999999854
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=3.3e-24 Score=232.15 Aligned_cols=204 Identities=19% Similarity=0.262 Sum_probs=165.8
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc-eee
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF-SFK 629 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~-~~~ 629 (847)
.|...+..++|++||+++++++ .|+.|++||+.++. .++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~----------------------------------------~dg~i~iw~~~~~~~~~~ 48 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCS----------------------------------------SDQHIKVFKLDKDTSNWE 48 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE----------------------------------------TTSEEEEEEECSSSCCEE
T ss_pred ccccceeEEEEcCCCCEEEEee----------------------------------------CCCeEEEEECCCCCCcce
Confidence 4555778888988888665543 24556666666431 335
Q ss_pred EeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------ceeEEEccCCCCeEEEEEcCC--CCEEE
Q 003106 630 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRLA 696 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~---------~~~~~l~~h~~~I~~v~fsp~--~~~La 696 (847)
....+.+|...|++++|++ |+++|++|+.||+|+|||++++ +.+..+..|...|++++|+|+ +++|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 6677889999999999999 6999999999999999999876 567888899999999999999 99999
Q ss_pred EEeCCCcEEEEECCCCCceEEEe-------------ccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCce--E
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC--T 759 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~-------------~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~--~ 759 (847)
+++.||+|++||+++. ..+..+ .+|...|.+++|+|+ ...++++++.|+.+.+|+...++. +
T Consensus 129 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 129 CLGNDGILRLYDALEP-SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEETTCEEEEEECSST-TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EecCCCcEEEecCCCh-HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999873 332222 267889999999997 234677999999998888888765 6
Q ss_pred EEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCC
Q 003106 760 RVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~ 795 (847)
..+..|...|.++.+... ..++++..++.|++|+..
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 677788899999998877 478899999999999954
No 69
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.1e-24 Score=239.07 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=181.2
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspd----g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
++.++.|++||+.++.....+..+. .|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+.+|...|+
T Consensus 40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~ 119 (366)
T 3k26_A 40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN 119 (366)
T ss_dssp EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE
T ss_pred ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE
Confidence 3456689999999775555554443 37789999999998 67999999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 685 DVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 685 ~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+++|+| ++++|++++.||+|+|||+++ +..+..+ .+|...|++++|+|++. +|++++.||.|++||+++++.+.
T Consensus 120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMN 197 (366)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHH
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCcccc
Confidence 999999 899999999999999999998 6777777 68999999999999987 55699999999999999876554
Q ss_pred EEee----------------------------CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccce------------
Q 003106 761 VFKV----------------------------ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINAN------------ 800 (847)
Q Consensus 761 ~~~~----------------------------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~------------ 800 (847)
.+.. +...|.++.+. ...++++..++.|++|+.......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 3332 77888888887 668899999999999995533220
Q ss_pred eeecccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEccC
Q 003106 801 IFCGLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 801 ~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~gt 846 (847)
....+. .+...+....|+ + + +.+|++|+.||.|++|++.+
T Consensus 277 ~~~~~~-~~~~~v~~~~~s----~-~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 277 ILGRFD-YSQCDIWYMRFS----M-DFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEEEEE-CSSCCSSCCCCE----E-CTTSSEEEEECTTSCEEEEECCS
T ss_pred eecccc-ccCCcEEEEEEc----C-CCCCcEEEEEecCCcEEEEECCC
Confidence 111111 122223333333 3 4 78999999999999999864
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=4.7e-24 Score=257.60 Aligned_cols=226 Identities=17% Similarity=0.183 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCce--eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.+... ......+.+|...|++|+|++++++|++|+.||+|+|||+.++..+..+.+|...|++|+
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence 678899999999976422 245667899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEe---ccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~---~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|+|++++|++|+.|++|+|||+.. ....... .+|...|.+++|+|++. .+|++|+.|++|+|||+++++++..+.
T Consensus 480 ~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 480 FSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999999999999999999999875 3222222 46889999999999863 467799999999999999999999999
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+|...|.++.+.. ...+++++.++.|++||...... ..... ....+....| .+ ++.+|++ +.|+.|+||
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~----sp-~~~~l~~-~~~~~i~iw 628 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--LYSLE--ANSVIHALCF----SP-NRYWLCA-ATEHGIKIW 628 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--EECCB--CSSCEEEEEE----CS-SSSEEEE-EETTEEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--EEEec--CCCcEEEEEE----cC-CCcEEEE-EcCCCEEEE
Confidence 9999999998875 45788899999999999764322 21111 1222333333 33 4455555 456779999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
++.+
T Consensus 629 d~~~ 632 (694)
T 3dm0_A 629 DLES 632 (694)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9854
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=243.78 Aligned_cols=273 Identities=12% Similarity=0.049 Sum_probs=193.2
Q ss_pred EEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEE-eeec-CC----CCCCCCcEEEEeccC---CceeeE
Q 003106 560 MFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSH-DD----TDPRDAGGRGMDVSQ---GFSFKE 630 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~-d~----t~~~d~~v~vwd~~~---~~~~~~ 630 (847)
.|++++..+++.. +|+.. ++....+ . ..+...|.+ .+.+ ++ +++.|++|++||+.+ +..++.
T Consensus 34 ~f~~~~~~~~~~~---~w~~~-g~~~~~~----~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN---MGNLR-GKLIATL----M-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC---GGGCC-CCEEEEE----C-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc---ccccc-ceEEeee----c-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4567777655544 46633 3222221 0 112233333 3444 44 678999999999987 432333
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeEEEcc------------CCCCeEEEE--EcCCCC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---TLKSKTNLEE------------HSSLITDVR--FSPSMP 693 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---~~~~~~~l~~------------h~~~I~~v~--fsp~~~ 693 (847)
...+ .|...|++|+|++++++|++|+.||+|+|||++ +++.+..+.. +...+.++. +++++.
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 3343 599999999999999999999999999999995 5555444332 456677777 568899
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-eCCceEE
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-VESFCCW 770 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~ 770 (847)
+|++|+.|++|++||+++ +..+..+.+ |...|++++|+|++. +|++|+.||.|++||+++++++..+. .+...|.
T Consensus 184 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred EEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 999999999999999998 778888887 899999999999977 56699999999999999999999987 6777888
Q ss_pred EEEecC-----CCEEEEEcCCCcEEEEcCCcccceeeeccc--------cc-----------CCCCccccccccccccCC
Q 003106 771 CVNAMN-----RPCLWDKLDAGDIQISDSLFINANIFCGLG--------WY-----------GSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 771 ~~~~~~-----~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~--------~~-----------~~~~~~~~~w~~~~~~~~ 826 (847)
++.+.. ...++++..++.|++||............. +. ........++.+.+. +
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~ 339 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--N 339 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--T
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--C
Confidence 885432 337888999999999997533221111100 00 000012223333333 4
Q ss_pred CcEEEEEeCCCeEEEEEccC
Q 003106 827 ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+|++|+.||.|++|++.+
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTC
T ss_pred ceEEEecCCCCeEEEEECCC
Confidence 58999999999999999854
No 72
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=253.70 Aligned_cols=227 Identities=12% Similarity=0.005 Sum_probs=174.2
Q ss_pred CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCce----------
Q 003106 610 TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS---------- 672 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspd------g~~Lasgs~Dg~V~vwd~~~~~~---------- 672 (847)
+++.|++|+|||+.++.. .....++..|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 577899999999987632 2223456788999999999996 57999999999999999986532
Q ss_pred -eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE--EEecCCCeEEEEEeCCCcEE
Q 003106 673 -KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 673 -~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl--~fsp~g~~ll~s~s~Dg~V~ 749 (847)
..++.+|...|++|+|++++ .|++|+.||+|+|||+++....+..+.+|...|++| +|++++..+|+||+.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 34788999999999999864 899999999999999997545667788999999999 56777646888999999999
Q ss_pred EEECCCCceEEEEeeCCc--eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 750 YWSINNGSCTRVFKVESF--CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|||+++++++..+.++.. .|.++.+.+ ...+.++..++.|++|+........ ...+ +.. .++.+.+.+ +
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~-~l~g--H~~----~V~sva~Sp-~ 408 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH-PLVS--RET----TITAIGVSR-L 408 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE-EEEE--CSS----CEEEEECCS-S
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce-eeec--CCC----ceEEEEeCC-C
Confidence 999999988877776643 366677665 4467788889999999965432211 1111 222 344455545 6
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++|+.||+|++|++.
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCBCEEEETTTEEECCBSC
T ss_pred CCeEEEEECCCEEEEEech
Confidence 7789999999999999863
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=1e-23 Score=258.12 Aligned_cols=276 Identities=16% Similarity=0.234 Sum_probs=213.3
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||.++++++.+ +|||+.++.....+.. +...|. +.+++++ +++.|+.|++||+.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 44567899999999999887654 7999998866554321 222333 2344444 56779999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
++ +.+..+.+|.+.|++++|+|++++|++|+.||+|+|||++++ .....+.+|...|++++|+| ++..|++++.|
T Consensus 86 ~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 86 TG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CC---cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 77 567778899999999999999999999999999999999976 77788889999999999999 78899999999
Q ss_pred CcEEEEECCCCCceEEEecc-CCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 702 KTVRVWDADNPGYSLRTFMG-HSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp--~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
|+|++||+++ +.....+.. +...|.+++|+| ++. +|++++.||.|++||+++++++..+..|...+.++.+...
T Consensus 163 g~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 163 RTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp SEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 9999999987 444555544 448899999999 766 5669999999999999999999999999999998887654
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..++++..+|.|++|+...... ...... + ...+|.+.+.+....++++.+.|+.+.+|+++
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~--~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKV--EKTLNV-G----LERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSE--EEEECC-S----SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred CEEEEEeCCCeEEEEECCCCcE--EEEeec-C----CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 4788899999999999664322 111111 1 12345555555444443444556668888764
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=4e-23 Score=236.07 Aligned_cols=272 Identities=18% Similarity=0.240 Sum_probs=201.0
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-ee--cCC----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LS--HDD----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s--~d~----t~~~d~~v~vw 620 (847)
.+...+..++|++++ .+++++.+ ++||+.+++....+. .+...+.+. +. .++ +++.|+.|++|
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 355678899999988 56555444 899999887554332 122333322 22 232 67889999999
Q ss_pred eccCCceee--------------------EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC
Q 003106 621 DVSQGFSFK--------------------EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 621 d~~~~~~~~--------------------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
|+.++.... .+..+.+|...|.++ ++++++|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 998763222 256788999999988 4678999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
..|++++|+|++++|++|+.||+|++||+++ +.++.++.+|...|.+++|++ . +|++++.||.|++||++++....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999999999999999999998 788999999999999999984 3 67799999999999999988776
Q ss_pred EEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 761 VFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 761 ~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
.+.... .+..+.+ .+...+..+. ++.|++|+..... ........+. ..+|.+.+. ...++++++.||.+
T Consensus 387 ~~~~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~--~~~~~~~~~~----~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 SYHHTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK--LVHANILKDA----DQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp EEECTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC--EEESCTTTTC----SEEEEEEEE--TTEEEEEEEETTEE
T ss_pred eecCCC-CccEEEEEeCCCEEEEec-CCeEEEEECCCCc--EEehhhccCC----CcEEEEEec--CCEEEEEEEeCCeE
Confidence 664332 2333222 3344555555 8999999976432 2222122222 334444443 46677778888887
Q ss_pred EEEEcc
Q 003106 840 SSFIAG 845 (847)
Q Consensus 840 ~vW~~g 845 (847)
.+|.+.
T Consensus 457 ~i~~ld 462 (464)
T 3v7d_B 457 FLEILD 462 (464)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 777654
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=1.2e-24 Score=236.94 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=156.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD 708 (847)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.++. .+.++.+|...|++|+|++ ++++|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998764 4678899999999999986 488999999999999999
Q ss_pred CCCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEEecCC------
Q 003106 709 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVNAMNR------ 777 (847)
Q Consensus 709 ~~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~~~~~------ 777 (847)
+++.. ..+..+.+|...|++|+|+|+. ..+|++|+.|++|++||++.+.. ...+..|...+.++.+...
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98732 4567788999999999999983 34677999999999999987632 3344566666766665443
Q ss_pred ------------CEEEEEcCCCcEEEEcCCcccc-eeeecccccCCCCccccccccccccC---CCcEEEEEeCCCeEEE
Q 003106 778 ------------PCLWDKLDAGDIQISDSLFINA-NIFCGLGWYGSDEIPAPSWKVSCRSC---RECCLYTGCGDSSLSS 841 (847)
Q Consensus 778 ------------~~l~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~l~sGs~DG~V~v 841 (847)
..++++..++.|++|+...... .....+ ..+...+....|+ +. ...+|++|+.||+|+|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~s----p~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWA----PSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECC----CCSSCSCCEEEEEETTCEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEec----CCCCCCCceEEEEcCCCeEEE
Confidence 4688899999999999642211 111111 1122333343443 42 2478999999999999
Q ss_pred EEccC
Q 003106 842 FIAGT 846 (847)
Q Consensus 842 W~~gt 846 (847)
|++.+
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 98753
No 76
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.2e-24 Score=258.55 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=182.9
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~ 687 (847)
+.|+.|++||+.++ ..+.+..+.+|.+.|++++|+++ +++|++|+.||+|+|||+.+++ .+..+.+|...|++++
T Consensus 28 ~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~ 106 (753)
T 3jro_A 28 SSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 106 (753)
T ss_dssp ETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEE
Confidence 34567788887755 55778889999999999999987 9999999999999999999886 7778889999999999
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecC-------------CCeEEEEEeCCCcEEEE
Q 003106 688 FSPS--MPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN-------------KDDLICSCDGDGEIRYW 751 (847)
Q Consensus 688 fsp~--~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~-------------g~~ll~s~s~Dg~V~iW 751 (847)
|+|+ +++|++|+.||+|++||+++.. .....+.+|...|.+++|+|. +. +|++|+.||.|++|
T Consensus 107 ~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iw 185 (753)
T 3jro_A 107 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIW 185 (753)
T ss_dssp ECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEE
T ss_pred ECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEE
Confidence 9999 9999999999999999998742 345567789999999999994 55 66799999999999
Q ss_pred ECCCC----ceEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccc
Q 003106 752 SINNG----SCTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 752 D~~~~----~~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
|++++ .++..+..|...|.++.+... ..++++..+|.|++|+.............. .......++.+.+.
T Consensus 186 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~s 263 (753)
T 3jro_A 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWS 263 (753)
T ss_dssp EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS--SSCCSSCCCCEEEC
T ss_pred eccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec--cCCCCCceEEEEEc
Confidence 99987 566778889999999988765 578889999999999965432211111111 11112223334444
Q ss_pred cCCCcEEEEEeCCCeEEEEEcc
Q 003106 824 SCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+ ++.+|++|+.||.|+||++.
T Consensus 264 p-dg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 L-SGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp T-TTCCEEEECSSSCEECCBCC
T ss_pred C-CCCEEEEEcCCCEEEEEecC
Confidence 4 67889999999999999975
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=1.1e-22 Score=219.04 Aligned_cols=272 Identities=15% Similarity=0.240 Sum_probs=200.2
Q ss_pred cceEEEecCCCeEeec--CCCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 556 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~--~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
...+.||+++ .++++ +.++|||+.+++....+. ...+...|. +.+.+++ +++.|++|++||+.++
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~----~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--- 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--- 99 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEE----CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEE----ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---
Confidence 3578999987 44443 344999999987655432 112333343 3355554 7889999999999987
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+.+..+.+|...+.++.+ ++.+|++|+.++.+++|+.... ..+..+.+|...+.++.|++++++|++++.|++|+||
T Consensus 100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 677888999999988766 4679999999999999998854 5667788999999999999999999999999999999
Q ss_pred ECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEE--EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLIC--SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 708 D~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~--s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
|+++.. ..+.....|.+.|.++.|++++..+++ +++.+++|++||.+.........................++.
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEE
Confidence 998732 234566678899999999999887664 456789999999999887776665554433333344444444
Q ss_pred --EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 783 --KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 783 --~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+..++.|++||...... +..+. .+...+.. +.+.+ ++.+|+||+.||+|+||++.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~--~~~l~-gH~~~V~~----l~~sp-dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAK--VAELK-GHTSRVLS----LTMSP-DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTCCE--EEEEC-CCSSCEEE----EEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCCcE--EEEEc-CCCCCEEE----EEEcC-CCCEEEEEecCCeEEEEECC
Confidence 44789999999764322 22211 12333333 44444 67899999999999999985
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=2.5e-23 Score=267.20 Aligned_cols=233 Identities=23% Similarity=0.343 Sum_probs=195.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|+|||+++++++.+ ++||+.+++....+. .+...|. +.+++++ +++.|+.|++||+
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 355678899999999999886654 899999987654432 1223333 3455555 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
.++ +.+..+.+|...|.+++|++ ++.+|++|+.|+.|++||+.+++++.++.+|...|++++|+|++++|++++.
T Consensus 687 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 687 ATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 987 67778899999999999999 5568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCCceEEE-------------------------------------------------------eccCCCC
Q 003106 701 DKTVRVWDADNPGYSLRT-------------------------------------------------------FMGHSAS 725 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~-------------------------------------------------------~~~h~~~ 725 (847)
||+|++||+++ +..... ..+|...
T Consensus 764 dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 764 DGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SSEEEEEEGGG-TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CCeEEEEeCCC-CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence 99999999876 222111 1268889
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcC
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
|.+++|+|++. ++++++.||.|++||+.++.++..+.+|...|.++.+... ..+++++.++.|.+|+.
T Consensus 843 v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 843 IQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999987 5668999999999999999999999999999999988754 57889999999999983
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=3.9e-24 Score=243.44 Aligned_cols=185 Identities=9% Similarity=0.030 Sum_probs=156.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~~v 686 (847)
+++.||.|+|||+.++ .......+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++......... +...|.++
T Consensus 137 sGs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 215 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL 215 (435)
T ss_dssp EEETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCE
T ss_pred EEeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEE
Confidence 6788999999999877 3445556779999999999998 789999999999999999987654433333 34467899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE---e
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---K 763 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~---~ 763 (847)
+|++++.+|++|+.||+|++||++. ..+..+.+|...|++|+|+|++..+|++|+.|++|+|||+++.+....+ .
T Consensus 216 ~~~~~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 216 DVSASSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEETTTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EECCCCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 9999999999999999999999975 5677888999999999999999989999999999999999987654433 4
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcc
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~ 797 (847)
.|...|.++.+.. ...+++++.++.|++|+....
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 6788899988764 567889999999999996543
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=2.1e-23 Score=234.27 Aligned_cols=278 Identities=10% Similarity=0.051 Sum_probs=199.1
Q ss_pred ceEEEecCCCeEeec----CCCeEEeCCCCchh-hccccccccCCCCCceEEe-eec-CC----CCCCCCcEEEEeccCC
Q 003106 557 PLMMFGTDGAGTLTS----PSNQLWDDKDLELR-ADMDRLVEDGSLDDNVESF-LSH-DD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~----~~~~iWD~~~~~~~-~~~~~~~~~g~~d~~v~~~-~s~-d~----t~~~d~~v~vwd~~~~ 625 (847)
..++++++...+++. +..+|||+...... ..+..+ ..+...|..+ +.+ ++ +++.|+.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV---CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB---CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE---ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 356777777655442 34489999654222 211111 1233344433 333 33 6788999999999886
Q ss_pred cee----eEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE--ccCCCCeEEEEEcCCCCEEEEE
Q 003106 626 FSF----KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 626 ~~~----~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~h~~~I~~v~fsp~~~~Lasg 698 (847)
... +.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.+..+ ..|...|++++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 221 4677889999999999999998 69999999999999999999999999 8899999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEe-ccCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCce-EEEEe-eCCceEEE
Q 003106 699 SFDKTVRVWDADNPGYSLRTF-MGHSAS-VMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSC-TRVFK-VESFCCWC 771 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~-~~h~~~-V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~~~~-~~~~~-~~~~~v~~ 771 (847)
+.||.|+|||+++ +..+..+ .+|.+. +.++.|+|++. +|++| +.|+.|++||+++++. +..+. .+...+.+
T Consensus 195 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 195 CRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred ecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 9999999999998 7777777 788776 89999999976 66677 6899999999998764 33333 34555677
Q ss_pred EEecCC-CEE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 772 VNAMNR-PCL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 772 ~~~~~~-~~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+... ..+ .++..++.|.+|+.......+.....+.+...+....|. + ++.+++ +.|+.+++|++.+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s----p-~~~~~~--s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM----P-KRGLEV--NKCEIARFYKLHE 342 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----C-GGGSCG--GGTEEEEEEEEET
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----c-ccccce--ecceeEEEEEcCC
Confidence 766543 344 456679999999966433211111112223334444444 3 344444 4677999999753
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.6e-23 Score=238.06 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=185.9
Q ss_pred CCCCCCcEEEEeccCC-------ceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce-------eE
Q 003106 610 TDPRDAGGRGMDVSQG-------FSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~-------~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~-------~~ 674 (847)
+++.++.|++||+.+. .....+..+.+|...|++|+|+|+++ +|++|+.||+|+|||+.++.. ..
T Consensus 146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (430)
T 2xyi_A 146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225 (430)
T ss_dssp EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSE
T ss_pred EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccce
Confidence 5677899999999862 13567788899999999999999988 999999999999999987322 45
Q ss_pred EEccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+.+|...|.+|+|+| ++.+|++++.||.|+|||+++.. ..+..+..|...|++|+|+|++.++|++|+.||.|+||
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vw 305 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 6778999999999999 67789999999999999999842 56777889999999999999998888899999999999
Q ss_pred ECCC-CceEEEEeeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccc------------eeeecccccCCCCcccc
Q 003106 752 SINN-GSCTRVFKVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINA------------NIFCGLGWYGSDEIPAP 816 (847)
Q Consensus 752 D~~~-~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~ 816 (847)
|+++ +.++..+..|...|.++.+... ..+++++.++.|.+|+...... ...... ..+...+.
T Consensus 306 d~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-- 382 (430)
T 2xyi_A 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKIS-- 382 (430)
T ss_dssp ETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEE--
T ss_pred eCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCce--
Confidence 9998 5678899999999999988754 4688899999999999654221 111111 11122233
Q ss_pred ccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 817 SWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 817 ~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+....+|++++.||.|+||++.
T Consensus 383 --~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 383 --DFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp --EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred --EEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 344445334499999999999999974
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2e-24 Score=239.48 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=171.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h~~~I~~v 686 (847)
+++.|+.|++||+.++ .++.+..+.+|...|++++|+|++++|++|+.|++|+|||+.+++ ....+..|...|+++
T Consensus 28 ~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 28 TTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp CCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred EecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 5678999999999876 556778889999999999999999999999999999999999876 677788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCc--eEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC---------
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--------- 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--------- 754 (847)
+|+|++++|++++.|++|++||+++... .+..+.+ |...|++++|+|++. +|++++.|++|++||++
T Consensus 107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999999999999999999999997332 4677777 999999999999987 66699999999999995
Q ss_pred ---------CCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceee-ecccccCCCCccccccccccc
Q 003106 755 ---------NGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIF-CGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 755 ---------~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~ 823 (847)
.++++..+ .|...|.++.+... ..++++..++.|++|+......... ......+...+....|+
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---- 260 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA---- 260 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE----
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc----
Confidence 35566667 78888999988654 4688899999999999654332111 11111122233333343
Q ss_pred cCCCcEEEEEeCCCeEEEEEc
Q 003106 824 SCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+ ++.+|++|+.|+.+ +|+.
T Consensus 261 ~-~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 261 N-ESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp E-TTEEEEEESSSSEE-EECC
T ss_pred C-CCCEEEEEcCCcEE-EEEe
Confidence 4 57788888877777 5543
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.8e-24 Score=242.78 Aligned_cols=260 Identities=10% Similarity=0.033 Sum_probs=187.0
Q ss_pred CCCcceEEEecCCCeEeecCCCeEE-eCCCCchhhccccccccCCCCCce-EEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSNQLW-DDKDLELRADMDRLVEDGSLDDNV-ESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~~iW-D~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...+.+++|+|||+.+++++.++.- |...+ ..+ .+ +...| .+-+++++ .++.+.+|+.... .
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~---~~l-----~g-h~~~v~~V~FsPdg---~~~~~~~~~~~~~----~ 78 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYA---KDI-----NC-NSKNLFHVKEFPLE---FENKLDFELAQQN----G 78 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCC---SCC-----SS-BGGGTEEEEEECCC---CCCTTTTSCCCSS----C
T ss_pred hccEEEEEECCCCCEEEEEcCCceeeccccc---cee-----cC-CCccEEEEEECCCC---CcceEEEEeCCCc----e
Confidence 3567799999999999999888432 43222 221 12 33333 34456655 4444444443322 2
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-----CeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-----~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
..++ .|...|.+|+|+|||++||+++.||+|+|||.+. ++..+. |.. .|.+|+|||||++||+|+.||+|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 4588999999999999999999999999999654 666677 665 499999999999999999999999
Q ss_pred EEECCCCCc------eEEEe----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce---EEEEe-eCCceEEE
Q 003106 706 VWDADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFK-VESFCCWC 771 (847)
Q Consensus 706 iWD~~~~~~------~~~~~----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~-~~~~~v~~ 771 (847)
|||+.+... .+.++ .+|.+.|.+|+|+|+| +++++.|++|++||+.++.. ..++. +|...|.+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 999998321 36776 6788899999999997 55788899999999998773 35664 67778888
Q ss_pred EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++. +..+.+++ ++.|++|+........+ ..+ +.. .++++.. +..++..+++++.||+ ++|...
T Consensus 232 vaFs-g~~LASa~-~~tIkLWd~~~~~~~~~-~~g--h~~----~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV-DYKVVLTC-PGYVHKIDLKNYSISSL-KTG--SLE----NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE-TTEEEEEC-SSEEEEEETTTTEEEEE-ECS--CCS----CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE-CCEEEEEe-CCeEEEEECCCCeEEEE-EcC--CCc----eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8887 56777766 68999999664333222 212 222 2333443 2336678999999999 999863
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=4.3e-23 Score=227.28 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
+++.++.|++||+.++ .++.+..+.+|...|++++|+|++++|++|+.||.|+|||+++++.... +..|...|++++
T Consensus 25 ~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 25 ICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp EECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred EEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 4567899999999887 4558888999999999999999999999999999999999998875544 367899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC-----------
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI----------- 753 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~----------- 753 (847)
|+|++++|++++.|+.|++||++.... ......+|...|++++|+|++. +|++++.||.|++||+
T Consensus 104 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccc
Confidence 999999999999999999999997432 2333467899999999999987 5669999999999995
Q ss_pred -------CCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 754 -------NNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 754 -------~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
..++++..+..+...+.++.+... ..++++..++.|++|+........ .+. .+...+....|+ +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~-~~~~~v~~~~~~----~- 254 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA--TLA-SETLPLLAVTFI----T- 254 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE--EEE-CSSCCEEEEEEE----E-
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE--EEc-cCCCCeEEEEEe----c-
Confidence 467888999889889999988644 588899999999999975433211 111 122233333343 3
Q ss_pred CCcEEEEEeCCCeEEEEEccC
Q 003106 826 RECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~gt 846 (847)
++.+|++| .||.|++|++.+
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEE-eCCeEEEEEccC
Confidence 45667766 999999999753
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.1e-23 Score=235.88 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=149.2
Q ss_pred CCCCCCcEEEEecc--CCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----EEccCCC
Q 003106 610 TDPRDAGGRGMDVS--QGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSS 681 (847)
Q Consensus 610 t~~~d~~v~vwd~~--~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~----~l~~h~~ 681 (847)
+++.|+.|++||+. ++. .+..+ ..|...|++++|+|++++|++|+.||.|++|++.+++... .+.+|..
T Consensus 120 ~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 120 CADSDKSLLVFDVDKTSKN---VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp EEGGGTEEEEEEECSSSSS---CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred EECCCCeEEEEECcCCCCc---eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 45678999999998 653 33333 3678999999999999999999999999999998776554 7788999
Q ss_pred CeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 682 LITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 682 ~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
.|++|+|+|+ +++|++|+.|++|+|||+++ +.++.. +.+|...|++++|+ ++. +|++++.|++|+|||+++++
T Consensus 197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCC
T ss_pred ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCc
Confidence 9999999999 99999999999999999998 556665 66899999999999 876 56699999999999999999
Q ss_pred eEEEEeeC-------------------------CceEEEEEecC-CCEEEEEc-CCCcEEEEcC
Q 003106 758 CTRVFKVE-------------------------SFCCWCVNAMN-RPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 758 ~~~~~~~~-------------------------~~~v~~~~~~~-~~~l~~~~-~~g~i~i~d~ 794 (847)
++..+..+ ...+.++.+.. ...++.+. .++.|.+|+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 98888632 23466666554 44566666 8899999997
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-23 Score=230.15 Aligned_cols=211 Identities=18% Similarity=0.161 Sum_probs=170.6
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR 705 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~ 705 (847)
.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++|+|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456778999999999999999999999999999999998 66778889999999999999987 89999999999999
Q ss_pred EEECCCCCc--eEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecC---
Q 003106 706 VWDADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMN--- 776 (847)
Q Consensus 706 iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~--- 776 (847)
|||+++ +. .+..+.+|...|++++|+|+ +. +|++++.|+.|++||++++. ....+..+...+.++.+..
T Consensus 83 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 83 IWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEcCC-CceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 999998 54 67778889999999999999 66 66799999999999999874 4456678888899998875
Q ss_pred -----------CCEEEEEcCCCcEEEEcCCcccceeeec-ccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEE
Q 003106 777 -----------RPCLWDKLDAGDIQISDSLFINANIFCG-LGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSF 842 (847)
Q Consensus 777 -----------~~~l~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW 842 (847)
...++++..++.|++||........... ....+...+....| .+.. +.+|++|+.||.|+||
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~----sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW----SPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE----CCCCCCCCeEEEEeCCCEEEEE
Confidence 6788999999999999965332221111 11112333334334 3432 7899999999999999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
++.+
T Consensus 237 d~~~ 240 (379)
T 3jrp_A 237 TQDN 240 (379)
T ss_dssp EESS
T ss_pred eCCC
Confidence 9854
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.2e-23 Score=232.05 Aligned_cols=221 Identities=13% Similarity=0.140 Sum_probs=180.0
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++.|+.|++||+.++. ....+. .|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+
T Consensus 109 ~~~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 109 VALERNVYVWNADSGS---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp EEETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred EECCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence 4568899999999873 333333 389999999999999999999999999999999999999999999999999994
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++|++|+.||.|++||++.....+..+.+|...|.+++|+|++. +|++|+.||.|++||+++++++..+..+...+
T Consensus 186 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 --RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred --CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 679999999999999999966778889999999999999999977 56699999999999999999999999999999
Q ss_pred EEEEecC--CCEEEEEc--CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE--EeCCCeEEEEE
Q 003106 770 WCVNAMN--RPCLWDKL--DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT--GCGDSSLSSFI 843 (847)
Q Consensus 770 ~~~~~~~--~~~l~~~~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s--Gs~DG~V~vW~ 843 (847)
.++.+.. ...+.++. .++.|.+||........ ... ....+....|+ + ++.+|++ |+.||.|+||+
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~--~~~--~~~~v~~~~~s----~-~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN--TVD--AGSQVTSLIWS----P-HSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE--EEE--CSSCEEEEEEC----S-SSSEEEEEECTTTCEEEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE--EEe--CCCcEEEEEEC----C-CCCeEEEEeecCCCcEEEEe
Confidence 9888765 34555544 69999999976432221 111 22233333343 4 5667777 55899999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+.+
T Consensus 334 ~~~ 336 (401)
T 4aez_A 334 YSS 336 (401)
T ss_dssp EET
T ss_pred cCC
Confidence 754
No 88
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.9e-24 Score=232.31 Aligned_cols=263 Identities=10% Similarity=0.005 Sum_probs=176.6
Q ss_pred ecCCCeEeecCCC---eEEeCCCCchhhcccc-ccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc------eeeEe
Q 003106 562 GTDGAGTLTSPSN---QLWDDKDLELRADMDR-LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF------SFKEA 631 (847)
Q Consensus 562 s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~-~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~------~~~~~ 631 (847)
..|+..+++++.+ ++||+.+++....+.. .+........ + .+++.|+++++|+..... ..+.+
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~-----~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--I-----ISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--E-----EEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--e-----EEecCCCeEEEEEccCceEEeecCCccee
Confidence 3456666665544 8999998876554331 0001001111 1 145678888888765321 11223
Q ss_pred EEee-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 632 NSVR-ASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
..+. +|.+.|.+++|+| ++++|++|+.||+|+|||+++++.+..+. .|...|++++|+|++.+|++|+.||+|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 3333 6778999999999 99999999999999999999998877664 455689999999999999999999999999
Q ss_pred ECCCCCceE-EEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceE--EEEEecCC-CE
Q 003106 708 DADNPGYSL-RTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCC--WCVNAMNR-PC 779 (847)
Q Consensus 708 D~~~~~~~~-~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v--~~~~~~~~-~~ 779 (847)
|+++ +..+ ..+.+ |...|++|+|+|++. +|++++ |+.|+|||+++++++..+.. +...+ .++.+... ..
T Consensus 198 d~~~-~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 198 NLSS-PDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp ESSC-TTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred ECCC-CCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9998 4545 78888 999999999999987 455777 55999999999877655443 22222 34666544 45
Q ss_pred EEEEcC-CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 780 LWDKLD-AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 780 l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++.. ++.+++|+.......... .......|.. +..+...+++++.||.++++.
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQS--DTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC------CCCCEEEEEEETTEEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe-------cCceeEecCc--cccccceeEEEecCCceEEEE
Confidence 556555 889999985322211111 0111122221 122456788999999988875
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=3.6e-23 Score=243.98 Aligned_cols=231 Identities=15% Similarity=0.235 Sum_probs=185.6
Q ss_pred CCCC-cceEEEec--CCCeEeecCCC---eEEeCCCC--------chhhccccccccCCCCCceE-EeeecCC----CCC
Q 003106 552 GTTS-KPLMMFGT--DGAGTLTSPSN---QLWDDKDL--------ELRADMDRLVEDGSLDDNVE-SFLSHDD----TDP 612 (847)
Q Consensus 552 ~~~~-~~~v~~s~--dG~~~~~~~~~---~iWD~~~~--------~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~ 612 (847)
+... +..++|+| ||+++++++.+ ++||+.++ .....+. .+...+. +.+.+++ +++
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ------VLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE------CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh------cccccEEEEEEeCCCCEEEEec
Confidence 4455 78999999 99999887655 89999755 2211111 1222232 2344443 222
Q ss_pred CC----CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCC---CeE
Q 003106 613 RD----AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LIT 684 (847)
Q Consensus 613 ~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~---~I~ 684 (847)
.+ +.+.+|| .+ +.+..+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|.. .|+
T Consensus 136 ~~~~~~~~v~~~d--~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210 (615)
T ss_dssp CCSSCSEEEEETT--TC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred cCCCCccEEEEEE--CC---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence 22 5777777 33 46777889999999999999998 899999999999999999999999999999 999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEe-c---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 685 DVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 685 ~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
+++|+|+ +++|++++.||.|++||+++ +..+..+ . +|...|.+++|+ ++. +|++++.|+.|++||+++++++
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEE
Confidence 9999999 99999999999999999998 7778888 6 899999999999 766 5669999999999999999999
Q ss_pred EEEeeC----CceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 760 RVFKVE----SFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 760 ~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
..+..+ ...+.++.+.....++.+..++.|.+|+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 999876 2455666666778899999999999999653
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=3.9e-23 Score=252.98 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=188.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.++.|++||+.++ +.+..+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|++++|+
T Consensus 30 ~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 106 (814)
T 3mkq_A 30 TTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106 (814)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEe
Confidence 4567899999999877 5777888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-ce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-FC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-~~ 768 (847)
|++++|++++.||+|++||+++.......+.+|...|++++|+|++..+|++++.||+|++||++++.....+..+. ..
T Consensus 107 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 99999999999999999999985577888899999999999999434577799999999999999988888777655 66
Q ss_pred EEEEEec---CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM---NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~---~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+. +...++++..++.|.+|+...... ..... .+...+....|+ + ++.+|++|+.||.|++|++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~----~-~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLE-GHMSNVSFAVFH----P-TLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEEC----S-SSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEc-CCCCCEEEEEEc----C-CCCEEEEEeCCCeEEEEECC
Confidence 7777765 466888999999999999654322 11111 122233333343 3 57799999999999999986
Q ss_pred C
Q 003106 846 T 846 (847)
Q Consensus 846 t 846 (847)
+
T Consensus 259 ~ 259 (814)
T 3mkq_A 259 T 259 (814)
T ss_dssp T
T ss_pred C
Confidence 5
No 91
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.7e-23 Score=253.79 Aligned_cols=196 Identities=11% Similarity=0.133 Sum_probs=156.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
+...+.+++|+|||+++++++.+ +|||....+...... ....|. +.+.++. +++.|++|++||+.+
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-------~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-------DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-------SCCCEEEEEEETTTEEEEEETTCEEEEEETTT
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-------CCCCEEEEEEcCCCEEEEEECcCeEEEEECCC
Confidence 45568899999999999887655 899988765432211 122232 2233322 567899999999998
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-----------EEEccCCCCeEEEEEcCC-C
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-M 692 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-----------~~l~~h~~~I~~v~fsp~-~ 692 (847)
+ +.+..+. |.+.|++++|+|++++|++|+.||+|++||++++++. ..+.+|.+.|++|+|+|+ +
T Consensus 89 ~---~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 89 Q---KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp C---SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred C---cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 7 3444554 7789999999999999999999999999999987753 234679999999999996 4
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccC------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..|++|+.||+| |||+++ +.++..+.+| ...|++|+|+|+|. +|++++.||+|+|||++
T Consensus 165 ~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred CEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence 689999999999 999998 7777777665 57799999999987 66799999999999999
Q ss_pred CCceEEE
Q 003106 755 NGSCTRV 761 (847)
Q Consensus 755 ~~~~~~~ 761 (847)
+++++..
T Consensus 242 ~g~~~~~ 248 (902)
T 2oaj_A 242 SGHMIMA 248 (902)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 9987754
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=1.3e-22 Score=230.45 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=178.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ +.+..+.+|.+.|.+++| ++++|++|+.||+|+|||+.+++.+.++.+|...|.+++|+
T Consensus 148 ~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 148 SGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222 (435)
T ss_dssp EEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred EEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc
Confidence 5678999999999876 567788899999999999 78999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..|++|+.||+|++||+++.... ...+.+|...|.+++|. +. +|++|+.||.|++||+++++++..+..+..
T Consensus 223 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 223 --NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp --TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred --CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 459999999999999999873322 26778999999999994 44 667999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.++.+. ...++++..++.|++||...... ..... .+...+.. +. .++.+|++|+.||.|++|++.
T Consensus 298 ~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~----~~---~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 298 GIACLQYR-DRLVVSGSSDNTIRLWDIECGAC--LRVLE-GHEELVRC----IR---FDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CEEEEEEE-TTEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEE----EE---CCSSEEEEEETTSCEEEEEHH
T ss_pred cEEEEEeC-CCEEEEEeCCCeEEEEECCCCCE--EEEEe-CCcCcEEE----EE---ecCCEEEEEeCCCcEEEEECC
Confidence 99999874 56888999999999999764322 11111 11222222 22 257899999999999999974
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.7e-22 Score=223.72 Aligned_cols=270 Identities=11% Similarity=0.062 Sum_probs=190.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
+...+.+++|+|||+.++++..+ +|||+..++....... . ...+..+..... +++.|++|++||+.++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM----R--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC----S--CCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec----C--CeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 45567899999999999887766 7999887654322110 0 111122211111 4566789999999987
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEE--EeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLAT--SSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Las--gs~Dg 702 (847)
+.+..+. |...|.+++|+++ .++++ .|+.|+|||+.++ +.+..+.. ....+++++ .++++ |+.||
T Consensus 92 ---~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 92 ---QDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp ---EEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred ---cEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence 4455554 6779999999876 34444 3789999999987 77666655 445566776 56666 57899
Q ss_pred cEEEEECCCCC--------------c-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEEe-e-
Q 003106 703 TVRVWDADNPG--------------Y-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFK-V- 764 (847)
Q Consensus 703 ~V~iWD~~~~~--------------~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~~-~- 764 (847)
+|+|||+++.. . ++..+.+|...|++|+|+|++. +|++|+.|++ |+|||+++++++..+. +
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~ 238 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRGL 238 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 99999999732 0 2788899999999999999987 6679999998 9999999999999998 4
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccc------------------c--CCCCccccccccccc
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGW------------------Y--GSDEIPAPSWKVSCR 823 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------------------~--~~~~~~~~~w~~~~~ 823 (847)
|...|.++.+.. ...+++++.++.|++|+...........+.. . .........|.
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---- 314 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI---- 314 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES----
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe----
Confidence 888999998875 4578889999999999965322111110000 0 00001122233
Q ss_pred cCCCcEEEEEeCCCeEEEEEcc
Q 003106 824 SCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++.+|++++.||.+++|++.
T Consensus 315 -~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 315 -SESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp -SSSEEEEEETTTTEEEEEEEE
T ss_pred -CCCCEEEEEeCCCeEEEEEEE
Confidence 257899999999999999863
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=9.2e-23 Score=222.14 Aligned_cols=267 Identities=9% Similarity=0.025 Sum_probs=201.6
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC-----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~-----t~~~d~~v~vwd 621 (847)
.+...+..++|+|||.++++++.+ ++||+.++........+. .+...+.. .+.+++ +++.|+.|++||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee---ecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 456678999999999998886554 899998776211111111 12222322 233332 466799999999
Q ss_pred c-cCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEEccCCCCeEEEEEc
Q 003106 622 V-SQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 622 ~-~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---------~~~~~~l~~h~~~I~~v~fs 689 (847)
+ .++ ....+.+ |...|.+++|++ +++|++|+.|+.|++||+++ ++++.++. |...|++++|+
T Consensus 86 ~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 86 LIGSP----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp SSSSS----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred eccCC----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 9 776 2366778 999999999999 99999999999999999987 77777776 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CCc-eEEEeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCC------ceEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADN-PGY-SLRTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNG------SCTR 760 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~-~~~-~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~------~~~~ 760 (847)
+++ |++++.|+.|++||+++ ... .......|...|.+++|+| ++. +|++++.||.|++||++.. +.+.
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccce
Confidence 887 99999999999999987 443 3344557888999999999 877 5668999999999999987 7888
Q ss_pred EEeeCCc---------eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 761 VFKVESF---------CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 761 ~~~~~~~---------~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
.+..+.. .+.++.+.. ...++++..+|.|++|+...... ...+...+. ..++.+. .++.+|
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~----~~v~~~~---~~~~~l 307 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--IKNFAKFNE----DSVVKIA---CSDNIL 307 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--EEECCCCSS----SEEEEEE---ECSSEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH--hhhhhcccC----CCceEec---CCCCeE
Confidence 8888765 888888764 45688999999999999763322 222211101 2233333 478899
Q ss_pred EEEeCCCe
Q 003106 831 YTGCGDSS 838 (847)
Q Consensus 831 ~sGs~DG~ 838 (847)
++|+.||+
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=3.5e-23 Score=230.65 Aligned_cols=239 Identities=16% Similarity=0.170 Sum_probs=191.2
Q ss_pred CCCCCcceEEEecC----C---CeEeecCCC---eEEeCCCCch-----hhccccccccCCC--CCceEE-eee----cC
Q 003106 551 SGTTSKPLMMFGTD----G---AGTLTSPSN---QLWDDKDLEL-----RADMDRLVEDGSL--DDNVES-FLS----HD 608 (847)
Q Consensus 551 ~~~~~~~~v~~s~d----G---~~~~~~~~~---~iWD~~~~~~-----~~~~~~~~~~g~~--d~~v~~-~~s----~d 608 (847)
.+...+..++|+++ | .++++++.+ ++||+.+++. ...+... ... ...+.. .+. ++
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL---DSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS---CTTGGGSCEEEEEEECCC---
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccc---ccccCCCcEEEEEEeeccCCC
Confidence 34556789999999 9 888775544 8999988764 2222111 000 122322 233 33
Q ss_pred C-----CCCCCCcEEEEeccC------Ccee--eEeEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 609 D-----TDPRDAGGRGMDVSQ------GFSF--KEANSV-------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 609 ~-----t~~~d~~v~vwd~~~------~~~~--~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
+ +++.|+.|++||+.+ +... .....+ ..|...|++++|+|++ +|++|+.|+.|+|||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 3 346789999999987 4222 122245 4589999999999999 99999999999999999
Q ss_pred CCceeEEEcc---C---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceEEEecc-------------CCCCe
Q 003106 669 TLKSKTNLEE---H---SSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMG-------------HSASV 726 (847)
Q Consensus 669 ~~~~~~~l~~---h---~~~I~~v~fsp~~~~Lasgs~D---g~V~iWD~~~~~~~~~~~~~-------------h~~~V 726 (847)
+++.+..+.. | ...|++++|+|++++|++++.| +.|++||+++ +..+..+.+ |...|
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE
Confidence 9999999998 9 9999999999999999999999 9999999998 778888888 99999
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe------eC---------------CceEEEEEecCC--------
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------VE---------------SFCCWCVNAMNR-------- 777 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~------~~---------------~~~v~~~~~~~~-------- 777 (847)
.+++|+|++. +|++++.||.|+|||+++++++..+. .+ ...|.++.+...
T Consensus 295 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 295 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 9999999987 56699999999999999999999999 77 888999988876
Q ss_pred ---CEEEEEcCCCcEEEEcCC
Q 003106 778 ---PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 778 ---~~l~~~~~~g~i~i~d~~ 795 (847)
..++++..++.|++|+..
T Consensus 374 ~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 374 DLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCEEEEEETTTEEEEEEEE
T ss_pred cccceEEEecCCCcEEEEEcC
Confidence 589999999999999853
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=2e-22 Score=218.95 Aligned_cols=227 Identities=19% Similarity=0.162 Sum_probs=187.3
Q ss_pred CCCCCCcEEEEeccCCc--eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.+.. ...+...+.+|...|.+++|+||+++|++|+.|+.|++|+............+...+.++.
T Consensus 56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence 67899999999998753 2345678899999999999999999999999999999999999999888888999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+++++.+|++++.|+.+++||+.........+.+|...|..++|++++. .++++++.|+.|++||+++++++..+..|.
T Consensus 136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 9999999999999999999999874455556678999999999998754 367799999999999999999999999999
Q ss_pred ceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 767 FCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 767 ~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..|.++.+.. ...++++..++.|++||.......... .+...+....|. + ...+++++.|+.|+||++.
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~----~--~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALCFS----P--NRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECSSCEEEEEEC----S--SSSEEEEEETTEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee----cCCceEEeeecC----C--CCceeeccCCCEEEEEECC
Confidence 9999998764 457888999999999997643322111 112223333332 2 3457778889999999975
Q ss_pred C
Q 003106 846 T 846 (847)
Q Consensus 846 t 846 (847)
+
T Consensus 286 ~ 286 (340)
T 4aow_A 286 G 286 (340)
T ss_dssp T
T ss_pred C
Confidence 3
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-22 Score=215.24 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=190.8
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
...+..++|++++..+++++.+ ++||+.+......+..+ ..+...+..+...+. +++.|+.+++|| .+
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~- 132 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL---IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG- 132 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE---CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch---hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-
Confidence 4567889999999999887655 88999876433322222 123333443322222 677899999999 22
Q ss_pred eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
+.+..+..|...|.+++|++ ++++|++++.||.|++|| ..+.+..+.. |...|.+++|+|++. |++++.||.|
T Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 133 --SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp --EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred --cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 56777889999999999998 999999999999999999 4567777777 999999999999997 9999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
++||+++ +..+..+.+|...|++++|+|++ . |++++.||.|++||+++++++..+..+...+.++.+.....++++.
T Consensus 208 ~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 208 KLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp EEEETTT-CCEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred EEEECCc-hhhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEe
Confidence 9999998 78889999999999999999998 3 5589999999999999999999999999999999988777788999
Q ss_pred CCCcEEEEcCCc
Q 003106 785 DAGDIQISDSLF 796 (847)
Q Consensus 785 ~~g~i~i~d~~~ 796 (847)
.++.|++|+...
T Consensus 285 ~dg~i~iw~~~~ 296 (313)
T 3odt_A 285 SDNLVRIFSQEK 296 (313)
T ss_dssp TTSCEEEEESCG
T ss_pred CCCcEEEEeCCC
Confidence 999999999653
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=3.2e-23 Score=226.74 Aligned_cols=225 Identities=14% Similarity=0.177 Sum_probs=172.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc-eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~I~~v~f 688 (847)
.|+.|++||+.++. ..... ..+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|++++|
T Consensus 42 ~d~~v~iw~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 42 GTGVIQLYEIQHGD-LKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119 (357)
T ss_dssp CCEEEEEEEECSSS-EEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred CCcEEEEEeCCCCc-cccee-eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence 38999999999873 22222 2378999999999998 6999999999999999999887 88999999999999955
Q ss_pred ------cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC----CeEEEE----EecCCCeEEEEEeCCCcEEEEECC
Q 003106 689 ------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 689 ------sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~----~V~sl~----fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
++++++|++++.||+|++||+++....+..+..|.+ .|++++ |++++. +|++++.||.|++||++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECc
Confidence 688999999999999999999985547777766654 799998 677876 66699999999999999
Q ss_pred CCceEEEEeeCCceEEEEEec----CCCEEEEEcCCCcEEEEcCCcccceeeec--ccccCCCCccccccccccccCCCc
Q 003106 755 NGSCTRVFKVESFCCWCVNAM----NRPCLWDKLDAGDIQISDSLFINANIFCG--LGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~~g~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+++++.. ..+...+.++.+. ....++++..++.|.+|+........... ....+...+. .+.+.+....
T Consensus 199 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~ 273 (357)
T 3i2n_A 199 NMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVW----QVRHLPQNRE 273 (357)
T ss_dssp TTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEE----EEEEETTEEE
T ss_pred cCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEE----EEEECCCCCc
Confidence 9987544 5667788888887 46788999999999999954322111100 0001222333 3344443233
Q ss_pred EEEEEeCCCeEEEEEcc
Q 003106 829 CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~g 845 (847)
+|++|+.||.|++|++.
T Consensus 274 ~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCcEEEeecC
Confidence 89999999999999975
No 99
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.3e-23 Score=229.44 Aligned_cols=237 Identities=12% Similarity=0.142 Sum_probs=194.0
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCC----------CCCceEEeeecCC---CCCCCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGS----------LDDNVESFLSHDD---TDPRDA 615 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~----------~d~~v~~~~s~d~---t~~~d~ 615 (847)
+...+..++|+++++.+++++.+ ++||+.+++....+........ ......+.+.+++ +++.++
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 227 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGG
T ss_pred CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC
Confidence 45567899999999988876544 8999988776544322111000 0001111222333 567789
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++ +|
T Consensus 228 ~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 228 AIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp CEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EE
T ss_pred eEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EE
Confidence 9999999976 5566778999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------------------
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------ 757 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------------------ 757 (847)
++++.|+.|++||+++ +..+..+..|...|.+++|+|++. +|++++.||.|+|||+++++
T Consensus 304 ~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP 381 (425)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEE
T ss_pred EEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCccc
Confidence 9999999999999998 778888999999999999999987 56689999999999999888
Q ss_pred --eEEEEeeCCc--eEEEEEecCC-CEEEEEcCCCcEEEEcC
Q 003106 758 --CTRVFKVESF--CCWCVNAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 758 --~~~~~~~~~~--~v~~~~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
++..+..+.. .|.++.+... ..++++..+|.|.+|+.
T Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 382 IPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp CCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred chhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8899998866 8898888754 46778999999999985
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=1e-22 Score=231.48 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=189.2
Q ss_pred CCCCcceEEEecC-CCeEeecCC---CeEEeCCCCchhhc----cccccccCCCCCceE-EeeecCC-----CCCCCCcE
Q 003106 552 GTTSKPLMMFGTD-GAGTLTSPS---NQLWDDKDLELRAD----MDRLVEDGSLDDNVE-SFLSHDD-----TDPRDAGG 617 (847)
Q Consensus 552 ~~~~~~~v~~s~d-G~~~~~~~~---~~iWD~~~~~~~~~----~~~~~~~g~~d~~v~-~~~s~d~-----t~~~d~~v 617 (847)
+...+..++|+|+ +..+++++. .++||+........ .........+...+. +.+.+++ +++.|+.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 3456789999998 556666543 48999976211000 000000011111222 2223322 57789999
Q ss_pred EEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEc
Q 003106 618 RGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 618 ~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fs 689 (847)
++||+.++. .......+.+|...|.+++|+| ++.+|++|+.||.|+|||++++ +.+..+..|...|++|+|+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 999998742 2333567789999999999999 7889999999999999999976 6778888999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------------
Q 003106 690 PSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------------- 755 (847)
Q Consensus 690 p~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------------- 755 (847)
|++. +|++|+.||+|+|||+++....+..+.+|...|++|+|+|+++.+|++++.||.|+|||++.
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 366 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccC
Confidence 9987 68899999999999999866778899999999999999999988889999999999999987
Q ss_pred -CceEEEEeeCCceEEEEEecCCC--EEEEEcCCCcEEEEcCC
Q 003106 756 -GSCTRVFKVESFCCWCVNAMNRP--CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 -~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~ 795 (847)
...+..+.+|...|.++.+.... .++++..++.|.+|+..
T Consensus 367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 36677778888889999887543 68889999999999854
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5e-22 Score=217.67 Aligned_cols=223 Identities=10% Similarity=0.105 Sum_probs=182.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||.|+|||+.+++.+..+. |...|.+++|+
T Consensus 49 ~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 124 (369)
T 3zwl_B 49 SCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFS 124 (369)
T ss_dssp EEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred EEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEc
Confidence 4567899999999876 5677889999999999999999999999999999999999999998887 88899999999
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCC----------ceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 690 PSMPRLATSSFD-----KTVRVWDADNPG----------YSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 690 p~~~~Lasgs~D-----g~V~iWD~~~~~----------~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
|++++|++++.+ +.|++||++... ..+..+..|.. .|.+++|+|++. +|++++.||.|++||
T Consensus 125 ~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d 203 (369)
T 3zwl_B 125 PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYD 203 (369)
T ss_dssp TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEE
T ss_pred cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEE
Confidence 999999999999 999999998632 13455556666 899999999987 556899999999999
Q ss_pred CCC-CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 753 INN-GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 753 ~~~-~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
+++ +..+..+..+...+.++.+.. ...++++..++.|.+||........... ....+....|+ + ++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~----~-~~~~l 274 (369)
T 3zwl_B 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVIT----P-LKEFI 274 (369)
T ss_dssp TTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEEC----S-SSSEE
T ss_pred CCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEec----C-CCceE
Confidence 999 788899999999999998764 4578888999999999976433221111 22223333333 3 67889
Q ss_pred EEEeCCC--------------eEEEEEccC
Q 003106 831 YTGCGDS--------------SLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG--------------~V~vW~~gt 846 (847)
++++.|+ .|++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EEEECCC-------------CEEEEEETTT
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 9999888 899998753
No 102
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=1.7e-22 Score=224.77 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=171.0
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcC-CCCEEEEEeCCCc
Q 003106 628 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDKT 703 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp-~~~~Lasgs~Dg~ 703 (847)
++....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|++++|+| ++++|++++.|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45677889999999999999999 999999999999999999888877775 6999999999999 6789999999999
Q ss_pred EEEEECCCCCceEEEeccC---CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC--
Q 003106 704 VRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP-- 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-- 778 (847)
|++||++. ..+..+..| ...|.+++|+|++. +|++++.|+.|++||+ +++++..+..|...|.++.+....
T Consensus 143 i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 99999985 455555444 48899999999987 5669999999999999 577899999999999999887654
Q ss_pred EEEEEcCCCcEEEEcCCccc--ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 779 CLWDKLDAGDIQISDSLFIN--ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++++..++.|++||..... ........ +...+.. +.+.+.++.+|++++.||.|++|++.+
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~----~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNA----AYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEE----EEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEE----EEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 68899999999999966422 11222221 2333333 444444678999999999999999864
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=8.8e-23 Score=220.86 Aligned_cols=209 Identities=19% Similarity=0.205 Sum_probs=163.0
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR 705 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~ 705 (847)
..+.+|.+.|++|+|+|++++|++|+.||.|+|||+.++ +.+..+.+|...|++|+|+| ++++|++++.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789999999999999999999999999999999876 46677889999999999999 689999999999999
Q ss_pred EEECCCCC--------ceEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCceEEEEe------------
Q 003106 706 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 763 (847)
Q Consensus 706 iWD~~~~~--------~~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~------------ 763 (847)
|||+++.. ..+..+.+|...|.+++|+|+ +. +|++++.||.|++||+++++++..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998732 457788899999999999999 66 56699999999999999887654443
Q ss_pred -eCCceEEEEEecC----CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC---CcEEEEEeC
Q 003106 764 -VESFCCWCVNAMN----RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR---ECCLYTGCG 835 (847)
Q Consensus 764 -~~~~~v~~~~~~~----~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~l~sGs~ 835 (847)
.+...+.++.+.. ...++.+..++.+.+|+............. .+...+....|+ +.. ..+|++|+.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~----p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWA----PSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEEC----CCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEEC----CCCCCcceEEEEEcC
Confidence 3455677777654 567888888888877765433222222211 123333443443 422 179999999
Q ss_pred CCeEEEEEccC
Q 003106 836 DSSLSSFIAGT 846 (847)
Q Consensus 836 DG~V~vW~~gt 846 (847)
||.|++|++.+
T Consensus 239 dg~i~iwd~~~ 249 (351)
T 3f3f_A 239 DGRIRIFKITE 249 (351)
T ss_dssp TSCEEEEEEEE
T ss_pred CCeEEEEeCCC
Confidence 99999999753
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=232.32 Aligned_cols=207 Identities=11% Similarity=-0.011 Sum_probs=161.7
Q ss_pred cCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 636 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~--~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++|+|+|++++|++|+.||.|++||+.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 355579999999999996 899999999999999 888888886 567899999999999999999999999999998
Q ss_pred CCCc---eEEEeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEE
Q 003106 711 NPGY---SLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 711 ~~~~---~~~~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
+... .+..+.+|...|++|+|+|+ +. +|++|+.|++|+|||+++++++.. +.+|...|.++.+.+...++++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEE
Confidence 7322 23367789999999999999 65 667999999999999999998887 5578888999887766688899
Q ss_pred cCCCcEEEEcCCcccceeeecccc-----c-------------CCCCccccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGW-----Y-------------GSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~-----~-------------~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
..++.|++||.............. . ........+..+.+.+ ++.+|++++ .|+.|+||++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEe
Confidence 999999999965433221111100 0 0001111223333344 577888888 9999999998
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=2.1e-22 Score=217.80 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=161.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCC-------------------------CEEEEEEcCC----CCEEEEEeC------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTS-------------------------KVICCHFSSD----GKLLATGGH------ 658 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~-------------------------~V~~l~fspd----g~~Lasgs~------ 658 (847)
...|++|+..++..++.+.+++.|.. .|++|+|+|| +.++++++.
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence 56788999888877788888887775 4567777778 777777553
Q ss_pred --------------CCcEEEEECC-CCceeEEEccCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 659 --------------DKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 659 --------------Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp---~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|+.|++|++. +++.+..+.+|...++.++|++ ++++|++++.|++|||||+++ +.+++++.
T Consensus 142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~ 220 (356)
T 2w18_A 142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMH 220 (356)
T ss_dssp ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEc
Confidence 8899999984 5888888888999999999998 778999999999999999999 88899998
Q ss_pred cCC---CCeEEEEEecCCCeE-----------EEEEeCCCcEEEEECCCCceEEEEe-----eCCceEEEEEecCCCEEE
Q 003106 721 GHS---ASVMSLDFHPNKDDL-----------ICSCDGDGEIRYWSINNGSCTRVFK-----VESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 721 ~h~---~~V~sl~fsp~g~~l-----------l~s~s~Dg~V~iWD~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~ 781 (847)
+|. ..|.+++|+|+|..+ +++|+.|++|++||+++++++.++. +|...+.+..+. ...+.
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lA 299 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAA 299 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEE
Confidence 754 367788999998754 3678899999999999999887763 333333333333 55678
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..++.|++||...... ...+............|+ + ++.+|++|+.|++||||++
T Consensus 300 SgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafS----P-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWS----G-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEEC----S-SSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEEC----C-CCCEEEEEECCCcEEEecC
Confidence 888999999999764332 222111111111222333 4 7889999999999999986
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=1.1e-22 Score=226.44 Aligned_cols=192 Identities=13% Similarity=0.138 Sum_probs=150.7
Q ss_pred cceEEEecCCCeEeec-C----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTS-P----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~-~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
...++|||||++++++ + ..+|||+.+++....+.. .+ ....+.+++|+ ..+.++.+++|+..++ .
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~~---~V~~v~fspdg~~l~s~s~~~~~~~~~~~~-~ 208 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---RG---EVKDLHFSTDGKVVAYITGSSLEVISTVTG-S 208 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---SS---CCCEEEECTTSSEEEEECSSCEEEEETTTC-C
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---CC---ceEEEEEccCCceEEeccceeEEEEEeccC-c
Confidence 4678999999987542 2 238999999876554321 11 12233456665 2334667888888776 3
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----eEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDK----KAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg----~V~vwd~~~~~~----~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
.........|...|++|+|+||+++|++++.|+ .|++||+..... ...+.+|...|++|+|+|++++||+|+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 333445678999999999999999999999887 688899876543 345778999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 700 FDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|++|+|||+++ +.++.++ .+|...|++|+|+|||+ +|+||+.|++|||||+...
T Consensus 289 ~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 NDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 999999999998 7777765 78999999999999988 5679999999999999653
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=6.1e-23 Score=230.62 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=158.0
Q ss_pred CCCCCCcEEEEeccCCce--eeEeEEeecCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCceeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~l~fsp--------dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h 679 (847)
+++.|++|++||+.++.. ...+..+.+|.+.|++|+|+| |+++||+|+.|++|+|||+.++..+..+..|
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~ 185 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL 185 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence 577899999999988732 233456789999999999997 8899999999999999999988888888899
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCce------------------------EEEeccCCCCeEEEEEe-c
Q 003106 680 SSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYS------------------------LRTFMGHSASVMSLDFH-P 733 (847)
Q Consensus 680 ~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~------------------------~~~~~~h~~~V~sl~fs-p 733 (847)
...|.+|+|+|++. +|++++.|++|+|||+++.... .....+|...|.++.|. +
T Consensus 186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence 99999999999875 7999999999999999873211 11224678889999997 6
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-------------------c--CCCEEEEEcCCCcEEEE
Q 003106 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-------------------M--NRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 734 ~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-------------------~--~~~~l~~~~~~g~i~i~ 792 (847)
++. .|++++.|++|++||++.+.....+..+...+..+.+ . +...+..+..+|.|++|
T Consensus 266 dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 266 DGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp TTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred CCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 766 5669999999999999988777666555443332221 1 22345677889999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
|......... .. .+...+.. +.+.+ ++.+|++++.||.+.+..+|+
T Consensus 345 d~~~~~~~~~-~~--~~~~~V~s----vafsp-dG~~LA~as~~Gv~lvrL~gf 390 (393)
T 4gq1_A 345 NTYEKDSNSI-PI--QLGMPIVD----FCWHQ-DGSHLAIATEGSVLLTRLMGF 390 (393)
T ss_dssp ETTCTTCCEE-EE--ECSSCEEE----EEECT-TSSEEEEEESSEEEEEEEGGG
T ss_pred ECCCCcEEEE-ec--CCCCcEEE----EEEcC-CCCEEEEEeCCCeEEEEEeCc
Confidence 9654332221 11 12223344 44445 789999999988766666553
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=1.2e-21 Score=221.67 Aligned_cols=236 Identities=17% Similarity=0.264 Sum_probs=191.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
.+...+.+++|+|||.++++++.+ +|||+.+++....+.. +...+.++..... +++.|+.+++||...
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~------h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS------HSARVGSLSWNSYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------CSSCEEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC------CCCceEEEeeCCCEEEEEeCCCceeEeeecc
Confidence 345568899999999999887655 8999998876554321 2333443322222 678899999999886
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEccCCCCeEEEEEcCCCC-EEEEE-
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMP-RLATS- 698 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----~~~~l~~h~~~I~~v~fsp~~~-~Lasg- 698 (847)
. ...+.++.+|...|.++.|++++++|++++.|+.|+|||+.+++ .+..+..|...|.+++|+|.+. .|+++
T Consensus 219 ~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 219 A--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp S--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred c--ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 4 25567789999999999999999999999999999999998654 4567778999999999999765 45544
Q ss_pred -eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 699 -SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 699 -s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
+.|++|+|||+++ +.++..+..| ..|.++.|++++..++++++ .|+.|+|||+++++++..+.+|...|.++++..
T Consensus 297 gs~D~~I~iwd~~t-~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 297 GTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp CTTTCEEEEEETTT-TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ecCCCEEEEEeCCc-cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 4799999999998 7777777655 56999999999987775443 689999999999999999999999999999874
Q ss_pred -CCEEEEEcCCCcEEEEcCCc
Q 003106 777 -RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 777 -~~~l~~~~~~g~i~i~d~~~ 796 (847)
...|++++.|+.|++|+...
T Consensus 375 dg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEecCCeEEEEECCC
Confidence 45788999999999999653
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=2.6e-22 Score=218.58 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=175.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCceeEEEcc--CCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~-~~~~~~~~l~~--h~~~I~~ 685 (847)
+++.|+.|++||+.++........+.+|...|++++|+++++ +|++|+.||.|++||+ .+++. ..+.+ |...|++
T Consensus 28 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICR 106 (342)
T ss_dssp EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEE
T ss_pred EEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEE
Confidence 566789999999998754445566779999999999999999 9999999999999999 77655 67788 9999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-C
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-G 756 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~--------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~ 756 (847)
++|+| +++|++++.|+.|++||+++. ..++..+. |...|.+++|++++ +++++.|+.|++||+++ +
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccc
Confidence 99999 999999999999999998751 23344444 88999999999885 66889999999999998 5
Q ss_pred ce--EEEEeeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcc-----cceeeecccccC---CCCcccccccccccc
Q 003106 757 SC--TRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFI-----NANIFCGLGWYG---SDEIPAPSWKVSCRS 824 (847)
Q Consensus 757 ~~--~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~---~~~~~~~~w~~~~~~ 824 (847)
.. ......+...+.++.+.. ...++.+..+|.+.+|+.... .........+.. .......++.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 53 334445677788888774 678889999999999986543 111111111110 001111233344444
Q ss_pred CCCcEEEEEeCCCeEEEEEccC
Q 003106 825 CRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~gt 846 (847)
++.+|++|+.||.|++|++.+
T Consensus 262 -~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 262 -RHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp -TTCCEEEEETTSCEEEEETTT
T ss_pred -CCCEEEEecCCceEEEEcCcc
Confidence 578899999999999999864
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=223.66 Aligned_cols=226 Identities=16% Similarity=0.225 Sum_probs=176.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEc-------------cCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHS 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-------------~h~ 680 (847)
..+++|++..+ +....+.+|.+.|++|+|+| ++++|++|+.||.|+|||+.++.....+. +|.
T Consensus 23 ~~~~v~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELN---KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEEC---TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccC---cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 34566666644 45566788999999999999 99999999999999999999876655543 599
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCc
Q 003106 681 SLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 681 ~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..|++++|+| ++.+|++++.||.|++||+++ +..+..+. +...+.++.|++.+. .++++++.|+.|++||+++++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999999999 778999999999999999998 66666665 778899999998643 277799999999999999999
Q ss_pred eEEEEeeCCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccceeeeccccc---------CCCCccccccccccccCC
Q 003106 758 CTRVFKVESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINANIFCGLGWY---------GSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~w~~~~~~~~ 826 (847)
++..+..+...+.++.+.... .++++..++.|++|+............... ........+..+.+.+ +
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 256 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-D 256 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-T
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-C
Confidence 999999999999999887554 578999999999999754332222111000 0011122233344444 6
Q ss_pred CcEEEEEeCCCeEEEEEccC
Q 003106 827 ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+|++|+.||.|++|++.+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEecCCCeEEEEECCC
Confidence 78999999999999999854
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=219.25 Aligned_cols=215 Identities=17% Similarity=0.265 Sum_probs=157.9
Q ss_pred eeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCC-Ccee-EEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.++.+..+.+|.+.|+||+|+|+ |++|++|+.||.|+|||+++ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 44667778899999999999998 69999999999999999996 5554 7788999999999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEE--ecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC---
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN--- 776 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~f--sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~--- 776 (847)
|+|+|||+++ +..+. +.+|...|++++| ++++. +|++++.||.|++||+++++++..+..+...+ ++.+..
T Consensus 108 g~v~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~ 183 (368)
T 3mmy_A 108 KTAKMWDLSS-NQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY-CADVIYPMA 183 (368)
T ss_dssp SEEEEEETTT-TEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEE-EEEEETTEE
T ss_pred CcEEEEEcCC-CCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCce-EEEecCCee
Confidence 9999999997 55444 5679999999999 77765 66799999999999999998887777554211 111110
Q ss_pred --------------------------------------------CCEEEEEcCCCcEEEEcCCcccc-e-eeecccccCC
Q 003106 777 --------------------------------------------RPCLWDKLDAGDIQISDSLFINA-N-IFCGLGWYGS 810 (847)
Q Consensus 777 --------------------------------------------~~~l~~~~~~g~i~i~d~~~~~~-~-~~~~~~~~~~ 810 (847)
...++.+..++.|.+|+...... . ......+...
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 11166777777777777553321 0 1111111000
Q ss_pred ------CCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 811 ------DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 811 ------~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
......+..+.+.+ ++.+|++|+.||.|++|++.+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTT
T ss_pred cccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCC
Confidence 00000233333444 578899999999999999864
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=3.1e-21 Score=217.85 Aligned_cols=275 Identities=8% Similarity=-0.043 Sum_probs=197.2
Q ss_pred cceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
...++|+|+++.+++++. .++||+.+++....+......+ ....+. +.+.+++ ++..++.|++||+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-- 201 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-- 201 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--
Confidence 346789997666666543 4899999887654222111111 122222 2223333 5667899999999876
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-------
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------- 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------- 699 (847)
+.+..+..|...+.+++|+|++++|+++ +.|+.|++||+++++.+..+..+ ..+.+++|+|++++|++++
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 202 -AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp -CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred -eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence 4566777899999999999999988554 47999999999999988887654 4599999999999999888
Q ss_pred -CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 700 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 700 -~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
.|+.|++||+++ +..+..+ .|...+.+++|+|+++.++++++.|+.|++||+++++++..+. +...+.++.+...
T Consensus 280 ~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 280 SGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp SCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred cCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence 588999999997 5555554 4666899999999998888898999999999999999888876 4455667776644
Q ss_pred CEEEEEcC---------------CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe-CCCeEEE
Q 003106 778 PCLWDKLD---------------AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSS 841 (847)
Q Consensus 778 ~~l~~~~~---------------~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~v 841 (847)
..++.+.. +|.|.+|+...... ...... ...+ +.+.+.+ ++.+|++++ .|+.|++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~--~~~~----~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA--GNQP----TGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC--SSSE----EEEEECT-TSCEEEEEETTTTEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC--CCCC----ceEEEcC-CCCEEEEEECCCCeEEE
Confidence 35666655 46899999653322 211111 1222 3333334 566777666 5999999
Q ss_pred EEccCC
Q 003106 842 FIAGTY 847 (847)
Q Consensus 842 W~~gty 847 (847)
|++..|
T Consensus 428 ~~~~~~ 433 (433)
T 3bws_A 428 YRRDGF 433 (433)
T ss_dssp EEETTC
T ss_pred EEecCC
Confidence 998754
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=8.4e-22 Score=252.94 Aligned_cols=232 Identities=21% Similarity=0.306 Sum_probs=187.5
Q ss_pred EeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc
Q 003106 603 SFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 603 ~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
+.+++++ +++.|++|++||+.++ +.+..+.+|.+.|++++|+||+++|++|+.|++|+|||+.+++.+.++.+
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 697 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 697 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 3455555 5778999999999977 56778889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 679 HSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 679 h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|...|++++|+++ +.+|++|+.|++|++||+++ +.++.++.+|...|++++|+|++. +|++++.||+|++||++++
T Consensus 698 ~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGT
T ss_pred CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCC
Confidence 9999999999994 55899999999999999998 788899999999999999999988 5669999999999999999
Q ss_pred ceEEEEeeCC-------------ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccc
Q 003106 757 SCTRVFKVES-------------FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 757 ~~~~~~~~~~-------------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
++...+.... ..+.++.+......+....++.+.+|+........... ..+...+....| .
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~v~~~~~----s 849 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYCDF----S 849 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE--CSSSSCCCEEEE----C
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc--CCCCCceEEEEE----c
Confidence 8887775332 24556666655555555567899999966433222221 112233333333 3
Q ss_pred cCCCcEEEEEeCCCeEEEEEccC
Q 003106 824 SCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+ ++.++++|+.||.|++|++.+
T Consensus 850 p-~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 850 P-YDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp S-STTEEEEECSSSCEEEEETTT
T ss_pred C-CCCEEEEEeCCCeEEEEEcCC
Confidence 4 688999999999999999854
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.2e-22 Score=219.85 Aligned_cols=222 Identities=9% Similarity=-0.025 Sum_probs=164.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEEc-cC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTNLE-EH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l~-~h 679 (847)
+++.|+.|++||+.++... ..+. ...|.++.|+|+ |++|+.|++|++|+.+ +++.+..+. .|
T Consensus 53 sg~~Dg~v~iwd~~~~~~~---~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 53 CRCEDGALHFTQLKDSKTI---TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEETTEEEEEEESSSSCE---EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred EECCCCcEEEEECCCCcEE---EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 5678999999999987433 3333 466888899988 9999999999999765 555455554 67
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 680 SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 680 ~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
...|.+++|+| ++++|++++.||+|++||+++ +..+..+ ..|...|++++|+|++. +|++|+.||.|+|||++++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCT
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC
Confidence 78999999999 999999999999999999998 5666655 34566899999999987 6779999999999999999
Q ss_pred ceE-EEEee-CCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE
Q 003106 757 SCT-RVFKV-ESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 757 ~~~-~~~~~-~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG 833 (847)
+++ ..+.. |...|.++.+.... .++++. ++.|++||...............+...+.. ..+.+.+ ++.+|++|
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~g~~l~~~ 278 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDD-SGKNMIAY 278 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC--EEEEECT-TSSEEEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc--eEEEECC-CCCEEEEe
Confidence 988 88888 89999999987654 555666 559999997643321111000000011111 1122233 67889999
Q ss_pred eC-CCeEEEEEcc
Q 003106 834 CG-DSSLSSFIAG 845 (847)
Q Consensus 834 s~-DG~V~vW~~g 845 (847)
+. |+.|+||++.
T Consensus 279 s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 279 SNESNSLTIYKFD 291 (343)
T ss_dssp ETTTTEEEEEEEC
T ss_pred cCCCCcEEEEEEc
Confidence 88 9999999873
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=4e-22 Score=215.67 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=160.6
Q ss_pred CCCCCcceEEEecC----CCeEeecCCC-eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCC
Q 003106 551 SGTTSKPLMMFGTD----GAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQG 625 (847)
Q Consensus 551 ~~~~~~~~v~~s~d----G~~~~~~~~~-~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~ 625 (847)
-+...+.+++|+|| +..++.++.. ++|++.++++.. . . ..+.|+.|++|++...
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~-------s---------s-----~~g~d~~V~~~~~s~d 167 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVS-------S---------S-----GTLSDQQVEVMTFAED 167 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEE-------E---------E-----SSSTTCEEEEEEECTT
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEE-------e---------c-----ccCCCCcEEEEEECCC
Confidence 33445677888888 7777765533 677664332211 0 0 1346888999998542
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCC---CCeEEEEEcCCCCEE----
Q 003106 626 FSFKEANSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS---SLITDVRFSPSMPRL---- 695 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~---~~I~~v~fsp~~~~L---- 695 (847)
.+.+..+.+|...++.++|++ ++++||+|+.|++|+|||++++++++++.+|. ..|.+++|+|++.++
T Consensus 168 --G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 168 --GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp --SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred --CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence 256667789999999999999 78999999999999999999999999998754 467888999999876
Q ss_pred --------EEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 696 --------ATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 696 --------asgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
++|+.|++|++||..+ +..+.++ .+|...+.+.+++ +. ++++++.|++|+|||+++++++.++
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp ------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEE
T ss_pred cCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEe
Confidence 5678899999999998 6666655 4777666555555 44 6789999999999999999999999
Q ss_pred eeCCceEE-EEEecC-CCEEEEEcCCCcEEEEc
Q 003106 763 KVESFCCW-CVNAMN-RPCLWDKLDAGDIQISD 793 (847)
Q Consensus 763 ~~~~~~v~-~~~~~~-~~~l~~~~~~g~i~i~d 793 (847)
.+|...+. ++.+.. ...+++++.|+.|++|+
T Consensus 322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 98876544 466654 56788999999999998
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=220.67 Aligned_cols=278 Identities=17% Similarity=0.152 Sum_probs=181.2
Q ss_pred CCcceEEEecCC--CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCcee
Q 003106 554 TSKPLMMFGTDG--AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 554 ~~~~~v~~s~dG--~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~ 628 (847)
..+..++|+|++ ..+++++.+ ++||+.+.........+.. .++.+... .......-..+.-.+.. ...
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~---~~g~~~~~--~~~~~~~~~~~~~~~~~--~~~ 166 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKE---EDGRYRDP--TTVTTLRVPVFRPMDLM--VEA 166 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----------C--CCCCSCCCCEEEEEEEE--EEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccC---ccccccCc--ccccceEeccccchhee--eec
Confidence 567899999998 667665544 8999977544321111100 00000000 00000000000101100 011
Q ss_pred eEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeE-------EEccCCCCeEEEEEcCCC-CEEEEE
Q 003106 629 KEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKT-------NLEEHSSLITDVRFSPSM-PRLATS 698 (847)
Q Consensus 629 ~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~-------~l~~h~~~I~~v~fsp~~-~~Lasg 698 (847)
..... ..+|...|++++|+|++++|++| .|++|+|||+++ ++.+. .+.+|...|++++|+|++ ++|++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence 22333 36899999999999999999999 799999999994 44444 256899999999999998 899999
Q ss_pred eCCCcEEEEECCCCCce----EEEeccCCC------------CeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEE
Q 003106 699 SFDKTVRVWDADNPGYS----LRTFMGHSA------------SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV 761 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~----~~~~~~h~~------------~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~ 761 (847)
+.||+|+|||+++ +.. +..+.+|.. .|.+++|+|++. +|++++. +.|+|||+++ ++++..
T Consensus 246 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 246 SSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp ETTSCEEEEETTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCC
T ss_pred eCCCeEEEEECcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccce
Confidence 9999999999998 444 688888876 899999999987 4558887 9999999997 888888
Q ss_pred EeeCCceEE---------------EEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccc------------------
Q 003106 762 FKVESFCCW---------------CVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGW------------------ 807 (847)
Q Consensus 762 ~~~~~~~v~---------------~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------------------ 807 (847)
+..|...+. .+.+. +...+++++.++.|++|+........+.....
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 887754221 13433 45678899999999999966433222111000
Q ss_pred -------cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 -------YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 -------~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.........++.+.+++ ++.+|++++.|+ +++|..
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 00001122344455556 678999998887 666654
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=212.49 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=163.0
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE--cC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f--sp 690 (847)
.|+.|++||+.+. .......+.+|...|++++|+|++++|++|+.||.|+|||+++++.+. +..|...|++++| ++
T Consensus 62 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 62 WANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS
T ss_pred CCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC
Confidence 4566777887763 223336678899999999999999999999999999999999888766 5579999999999 89
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------------------------------------CCeEEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------------------------------------ASVMSL 729 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------------------------------------~~V~sl 729 (847)
++++|++++.||.|++||+++ +..+..+..+. ..+.++
T Consensus 140 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T 3mmy_A 140 NYSCVMTGSWDKTLKFWDTRS-SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218 (368)
T ss_dssp SCEEEEEEETTSEEEEECSSC-SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred CCCEEEEccCCCcEEEEECCC-CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence 999999999999999999997 55555554332 233444
Q ss_pred EEecCCC---eEEEEEeCCCcEEEEECCCC---ceEEEEeeCCc------------eEEEEEecC-CCEEEEEcCCCcEE
Q 003106 730 DFHPNKD---DLICSCDGDGEIRYWSINNG---SCTRVFKVESF------------CCWCVNAMN-RPCLWDKLDAGDIQ 790 (847)
Q Consensus 730 ~fsp~g~---~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~~~------------~v~~~~~~~-~~~l~~~~~~g~i~ 790 (847)
++.++.. ..+++++.||.|++||++.. ..+..+..+.. .+.++.+.. ...++++..+|.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 4444332 23679999999999999987 66777877765 588888765 45788999999999
Q ss_pred EEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 791 ISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 791 i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+||...... ...+. .+...+.. +.+.+ ++.+|++|+.|+.++.|+
T Consensus 299 iwd~~~~~~--~~~~~-~~~~~v~~----~~~s~-~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 299 FWDKDARTK--LKTSE-QLDQPISA----CCFNH-NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEETTTTEE--EEECC-CCSSCEEE----EEECT-TSSCEEEEECCCSTTCGG
T ss_pred EEECCCCcE--EEEec-CCCCCceE----EEECC-CCCeEEEEeccccccccc
Confidence 999764322 22211 12223333 33334 678899999998665554
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=1.8e-20 Score=201.51 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=169.5
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.|++|++||+.++ .......+.+|...|++|+|+|++++|++|+.||+|+|||+++++.+..+.+|...+.++.+.
T Consensus 42 g~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~-- 118 (318)
T 4ggc_A 42 ALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-- 118 (318)
T ss_dssp EETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--
T ss_pred EeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--
Confidence 35889999999988 333344556888999999999999999999999999999999999999999999998887665
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce----EEEEeeCCc
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~----~~~~~~~~~ 767 (847)
+..|++++.++.+++|+.......+..+.+|...+..+.|++++. +|++++.|++|+|||+++++. ......+..
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 678999999999999999987778888999999999999999987 556999999999999998753 344555666
Q ss_pred eEEEEEecC--CCE--EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE--EeCCCeEEE
Q 003106 768 CCWCVNAMN--RPC--LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT--GCGDSSLSS 841 (847)
Q Consensus 768 ~v~~~~~~~--~~~--l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s--Gs~DG~V~v 841 (847)
.+.++.+.. ... +..+..++.|++|+........... ....+....|. + .+..+++ |+.||.|+|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~----~-~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWS----P-HYKELISGHGFAQNQLVI 268 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEE----T-TTTEEEEEECTTTCCEEE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeec----c-cccceEEEEEcCCCEEEE
Confidence 677666543 223 3456677889999965433222211 12222222222 3 3333443 458999999
Q ss_pred EEccC
Q 003106 842 FIAGT 846 (847)
Q Consensus 842 W~~gt 846 (847)
|++.+
T Consensus 269 wd~~~ 273 (318)
T 4ggc_A 269 WKYPT 273 (318)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99864
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=239.17 Aligned_cols=209 Identities=18% Similarity=0.152 Sum_probs=166.9
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iW 707 (847)
..+.+|.+.|+|++|+|++++|++|+.||+|+|||+. +++.+..+.+|.+.|++|+|+++ +++|++|+.||+|+||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998 56778889999999999999988 8999999999999999
Q ss_pred ECCCCCc--eEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecC-----
Q 003106 708 DADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMN----- 776 (847)
Q Consensus 708 D~~~~~~--~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~----- 776 (847)
|+++ +. .+..+.+|...|++++|+|+ +. ++++|+.||.|++||++++. ....+..+...|.++.+..
T Consensus 83 d~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 83 KEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred ECCC-CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 9998 44 67778899999999999999 66 66799999999999999873 4556778888899998876
Q ss_pred ---------CCEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEc
Q 003106 777 ---------RPCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ---------~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~ 844 (847)
...++++..+|.|++||.......... .....+...+.. +.+.+.. +.+|++|+.||+|++|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~----l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD----VAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE----EEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE----EEeccCCCCCCEEEEEecCCEEEEecC
Confidence 567889999999999996543221111 111112333333 3444533 789999999999999998
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
.+
T Consensus 237 ~~ 238 (753)
T 3jro_A 237 DN 238 (753)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=4.8e-20 Score=205.17 Aligned_cols=250 Identities=13% Similarity=0.037 Sum_probs=182.2
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
.++||+.+++....+.. ......+.+++++ ++..++.|++||+.++ +.+..+..+. .|.+++|+|
T Consensus 14 v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~sp 83 (391)
T 1l0q_A 14 ISVIDVTSNKVTATIPV------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSP 83 (391)
T ss_dssp EEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECT
T ss_pred EEEEECCCCeEEEEeec------CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECC
Confidence 48999998876554321 1112233344444 3447899999999877 4555555554 899999999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEeccCCCCe
Q 003106 649 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASV 726 (847)
Q Consensus 649 dg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V 726 (847)
++++|+++ +.|+.|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+++ +..+..+..| ..+
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~-~~~ 160 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSVG-RSP 160 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECC-SSE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEecC-CCc
Confidence 99988654 46799999999999998888755 468999999999977 6778899999999998 6777777655 557
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEc---CCCcEEEEcCCcccceee
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKL---DAGDIQISDSLFINANIF 802 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~---~~g~i~i~d~~~~~~~~~ 802 (847)
.+++|+|+++.++++++.|+.|++||+++++++..+..+ ..+.++.+.. ...++.+. .++.|.+||...... .
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--~ 237 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--T 237 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--E
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--E
Confidence 999999999988788889999999999999988877654 4566666654 44667666 688999999654322 1
Q ss_pred ecccccCCCCccccccccccccCCCc-EEEEEeCCCeEEEEEccC
Q 003106 803 CGLGWYGSDEIPAPSWKVSCRSCREC-CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 803 ~~~~~~~~~~~~~~~w~~~~~~~~~~-~l~sGs~DG~V~vW~~gt 846 (847)
..... .... ..+.+.+ ++. ++++++.|+.|++|++.+
T Consensus 238 ~~~~~--~~~~----~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 238 ARIPV--GPDP----AGIAVTP-DGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEC--CSSE----EEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred EEEec--CCCc----cEEEEcc-CCCEEEEEcCCCCEEEEEECCC
Confidence 11111 1112 2233334 454 457889999999999864
No 121
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.5e-21 Score=237.17 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=177.5
Q ss_pred EeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc
Q 003106 603 SFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 603 ~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
+.+++++ +++.|+.|++||..+. +.... ..|...|++|+|+| +++|++++.|++|+|||+++++++.++.
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 3455555 6788999999998765 23333 35888999999999 8899999999999999999999998886
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE-----------EEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-----------RTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~-----------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
|...|++++|+|++++|++|+.||+|++||+++ +.+. ..+.+|.+.|++|+|+|++..+|++|+.||.
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT-TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC-CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 778999999999999999999999999999997 4432 2346799999999999986667889999999
Q ss_pred EEEEECCCCceEEEEeeC------------------CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecc---
Q 003106 748 IRYWSINNGSCTRVFKVE------------------SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGL--- 805 (847)
Q Consensus 748 V~iWD~~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~--- 805 (847)
| +||+++++++..+..+ ...|.++.+.. ...+.++..++.|++||............
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 9 9999999999888765 35688888774 45788999999999999764322111111
Q ss_pred -ccc-----------CCCCccccccccccccCCCcEEEEEeCC-----CeEEEEEcc
Q 003106 806 -GWY-----------GSDEIPAPSWKVSCRSCRECCLYTGCGD-----SSLSSFIAG 845 (847)
Q Consensus 806 -~~~-----------~~~~~~~~~w~~~~~~~~~~~l~sGs~D-----G~V~vW~~g 845 (847)
.+. +...+....|.....+.+..+|++|+.| ..|++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 010 0112333444322223223678888776 378888853
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.86 E-value=3.1e-21 Score=216.64 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=154.0
Q ss_pred eEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eec--------CC----CCCCCCcEEEEe
Q 003106 558 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSH--------DD----TDPRDAGGRGMD 621 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~--------d~----t~~~d~~v~vwd 621 (847)
...+.+++..+++++.+ +|||+.+++....... .....+.+.|... +.+ |+ +++.|++|++||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~-~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL-GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE-CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee-cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 44556666667665544 9999988765332111 1111233334332 221 22 788999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEE-------------------------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTN------------------------- 675 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~------------------------- 675 (847)
+.++ .++..+..|...|.+++|+|++ .+|++|+.|++|+|||+.+++....
T Consensus 173 ~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 173 LTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred CCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 9876 5666777899999999999987 4899999999999999987654332
Q ss_pred EccCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEE------------------Eec-CC
Q 003106 676 LEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD------------------FHP-NK 735 (847)
Q Consensus 676 l~~h~~~I~~v~fs-p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~------------------fsp-~g 735 (847)
..+|...|.+++|+ ++++.|++++.|++|+|||+.. +.....+..|...+..+. |++ .+
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 23577889999987 7999999999999999999987 444444444444443333 333 34
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
..++++|+.||+|+|||+.+++++..+..+...|.++++..+..+++...++.+.+|.
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5567788899999999999999999998999999999988776655555555566654
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.7e-20 Score=215.13 Aligned_cols=220 Identities=7% Similarity=-0.032 Sum_probs=166.3
Q ss_pred CCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
|......++|+||| .+++|++.+++.... ......+....+.+++|+ +++.|+.+++||...
T Consensus 51 h~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~----~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--- 116 (588)
T 2j04_A 51 NSKNLFHVKEFPLE-------FENKLDFELAQQNGL----LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--- 116 (588)
T ss_dssp BGGGTEEEEEECCC-------CCCTTTTSCCCSSCS----STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---
T ss_pred CCccEEEEEECCCC-------CcceEEEEeCCCceE----eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---
Confidence 44466799999999 355566655542221 111112334455577777 688999999999543
Q ss_pred eeEeEEeecCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------eeEEE----ccCCCCeEEEEEcCC
Q 003106 628 FKEANSVRASTS-----KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-------SKTNL----EEHSSLITDVRFSPS 691 (847)
Q Consensus 628 ~~~~~~l~~h~~-----~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-------~~~~l----~~h~~~I~~v~fsp~ 691 (847)
.+..+. |.. .|.+++|+|||++||+|+.||+|+|||+.++. .+.++ .+|...|.+|+|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555566 665 59999999999999999999999999999875 35676 678889999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCc--eEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSFDKTVRVWDADNPGY--SLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
| |++++.|++|++||+..... ...++ .+|...|.+|+|+ +. .+++++ |++|++||+.+++......+|...
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 9 88899999999999987332 34566 4788999999999 44 565776 799999999988874444478888
Q ss_pred EEEEEe--cCCC-EEEEEcCCCcEEEEcCC
Q 003106 769 CWCVNA--MNRP-CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 769 v~~~~~--~~~~-~l~~~~~~g~i~i~d~~ 795 (847)
+..+.+ .++. .+..+.++|. ++|...
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 998888 6554 4556666888 888754
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.84 E-value=6.4e-19 Score=196.01 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=166.9
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..++.|++||+.++ +.+..+..|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+..+. .|.+++|+
T Consensus 8 ~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 8 NSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred cCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 456889999999877 4555666664 58999999999977 677789999999999999998887665 89999999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
|++++|+++ +.|++|++||+.+ +..+..+..| ..+.+++|+|+++.++++++.|+.|++||+++++++..+..+..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 159 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS- 159 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-
T ss_pred CCCCEEEEEECCCCEEEEEECCC-CeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-
Confidence 999988654 4679999999998 6667776644 56899999999998878999999999999999999988887654
Q ss_pred EEEEEecCC-CEE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe---CCCeEEEEE
Q 003106 769 CWCVNAMNR-PCL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC---GDSSLSSFI 843 (847)
Q Consensus 769 v~~~~~~~~-~~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs---~DG~V~vW~ 843 (847)
+.++.+... ..+ +.+..++.|.+||........... ..... ..+.+.+ ++.+|++++ .|+.|++|+
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~----~~~~~~~-~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAP----SGIAVNP-EGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEE----EEEEECT-TSSEEEEEEECSSCCEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCc----cceEECC-CCCEEEEEecCcCCCcEEEEE
Confidence 456665543 345 466788999999975432211111 11112 2233334 566777776 799999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+.+
T Consensus 231 ~~~ 233 (391)
T 1l0q_A 231 TGT 233 (391)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.83 E-value=8.9e-19 Score=193.77 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=138.3
Q ss_pred cceEEEecCCCeEe-ecCC---CeEEeCCCCchhhccccccccCCCCCceEEe-eecCC-CCCCCCcEEEEeccCC-cee
Q 003106 556 KPLMMFGTDGAGTL-TSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-TDPRDAGGRGMDVSQG-FSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~-~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-t~~~d~~v~vwd~~~~-~~~ 628 (847)
...+.+.+++..++ +++. .+|||+.+++....+. +...+..+ +..+. ....++.|++||+.++ ..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence 56677888887764 3333 3899999887655432 11123222 22221 2234788999999876 333
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECCCCc----------------eeEEEccCCCCeEEEEEcC
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLAT--GGHDKKAVLWHTDTLK----------------SKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Las--gs~Dg~V~vwd~~~~~----------------~~~~l~~h~~~I~~v~fsp 690 (847)
.. +.. ....+++++ .+|++ |+.||.|+|||+.++. .+..+.+|...|++|+|+|
T Consensus 134 ~~---~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 134 TD---DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR 205 (355)
T ss_dssp SC---CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred EE---ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence 22 322 445666776 66666 5789999999999765 2788999999999999999
Q ss_pred CCCEEEEEeCCCc-EEEEECCCCCceEEEec-c-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 691 SMPRLATSSFDKT-VRVWDADNPGYSLRTFM-G-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 691 ~~~~Lasgs~Dg~-V~iWD~~~~~~~~~~~~-~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
++++|++|+.|++ |+|||+++ +.++.++. + |...|++++|+|++. +|++++.|++|+|||++.+.
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 9999999999999 99999998 77888887 5 999999999999987 56699999999999998653
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=5.4e-18 Score=191.26 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=167.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeE--EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEAN--SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++..++.|++||+.++....... .+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...+.+++
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 218 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL 218 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE
Confidence 45667899999999874332211 3568999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-------CCCcEEEEECCCCceE
Q 003106 688 FSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCT 759 (847)
Q Consensus 688 fsp~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-------~Dg~V~iWD~~~~~~~ 759 (847)
|+|++++|+++ +.|+.|++||+++ +..+..+..+ ..+.+++|+|+++.+++++. .|+.|++||+++++.+
T Consensus 219 ~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 219 YDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTT-TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 99999988555 4799999999997 6777777654 55999999999986664442 5889999999999877
Q ss_pred EEEeeCCceEEEEEecCCC-EE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC--
Q 003106 760 RVFKVESFCCWCVNAMNRP-CL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG-- 835 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~~-~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~-- 835 (847)
..+.. ...+.++.+.... .+ +.+..++.|.+|+...... ..... ....+.. +.+.+ ++.+|++++.
T Consensus 297 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~~~--~~~~~~~----~~~s~-dg~~l~~~~~~~ 366 (433)
T 3bws_A 297 DTIGP-PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKSIP--VFDKPNT----IALSP-DGKYLYVSCRGP 366 (433)
T ss_dssp EEEEE-EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSSEEE----EEECT-TSSEEEEEECCC
T ss_pred eeccC-CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEEec--CCCCCCe----EEEcC-CCCEEEEEecCC
Confidence 76643 3355666665443 34 5568899999999763222 21111 1122222 33333 4666666665
Q ss_pred -------------CCeEEEEEccC
Q 003106 836 -------------DSSLSSFIAGT 846 (847)
Q Consensus 836 -------------DG~V~vW~~gt 846 (847)
||.|++|++.+
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CccccccccccccceEEEEEECCC
Confidence 68999999854
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=7.5e-18 Score=190.68 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=155.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
.+.|++||+..+ ....+.+|...|.+++|+|||++|++++.|+ .|++||+++++.. .+..|...+.+++|+|
T Consensus 158 ~~~i~i~d~~g~----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 158 PYELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP 232 (415)
T ss_dssp CEEEEEEETTSC----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred cceEEEEcCCCC----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence 389999999754 3456777999999999999999999999885 9999999988875 5667888999999999
Q ss_pred CCCEEE-EEeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeC
Q 003106 691 SMPRLA-TSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 691 ~~~~La-sgs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~ 765 (847)
||++|+ +++.|+. |++||+++ +. +..+..|...+.+++|+|+|+.+++++..++ .|.+||+.+++. ..+..+
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~ 309 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE 309 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTT-CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred CCCEEEEEEecCCCceEEEEECCC-CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence 999887 6666655 99999987 44 4677788889999999999987775554455 677779988764 344455
Q ss_pred CceEEEEEecCCC-EEEEEcC---CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC---e
Q 003106 766 SFCCWCVNAMNRP-CLWDKLD---AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS---S 838 (847)
Q Consensus 766 ~~~v~~~~~~~~~-~l~~~~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG---~ 838 (847)
...+.++.+..+. .++.... ...|.+|+........+ . ....+ +.+.+.+ ++.+|++++.|+ .
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l---~--~~~~~----~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL---S--STFLD----ETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC---C--CSSSC----EEEEECT-TSSEEEEEEEETTEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe---c--CCCCc----CCeEEcC-CCCEEEEEEcCCCccE
Confidence 5667667665443 4444433 24788888653322111 1 11122 3333334 677788877776 7
Q ss_pred EEEEEcc
Q 003106 839 LSSFIAG 845 (847)
Q Consensus 839 V~vW~~g 845 (847)
|++|++.
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999864
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.77 E-value=2.3e-17 Score=193.26 Aligned_cols=271 Identities=12% Similarity=0.080 Sum_probs=185.0
Q ss_pred EecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEec--cCCceeeEe
Q 003106 561 FGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDV--SQGFSFKEA 631 (847)
Q Consensus 561 ~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~--~~~~~~~~~ 631 (847)
|+++++.+++. +...+||..++++...+.. + .. .-.+.+++|+ +++.++.|++||+ .++ +.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g-~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----G-YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----S-TT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----C-cc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEE
Confidence 34555544443 2348899998877654331 1 11 1122355555 4556799999999 554 566
Q ss_pred EEeecCCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCceeEEEccC-----------CCCeEEEEEcCCCCE-
Q 003106 632 NSVRASTSKVICCHFSS----DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-----------SSLITDVRFSPSMPR- 694 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fsp----dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h-----------~~~I~~v~fsp~~~~- 694 (847)
.++. +...+..++|+| ||++|++++. +++|+|||..+++++.++..+ ...+.+|.|++++..
T Consensus 216 ~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6666 455689999999 9999999984 899999999999999888642 237899999998775
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee----CCceEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV----ESFCCW 770 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~----~~~~v~ 770 (847)
+++...+++|.+||+.+..........+...+.++.|+|+|+++++++..+++|.+||+++++++..+.. |.....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 4666789999999998743332222246677889999999998887887899999999999999998875 332223
Q ss_pred EEEecCCCEEEEEc--CCCcEEEEcCCccc-----ceeeecccccCCCCccccccccccccCCCcEEEEEe-------CC
Q 003106 771 CVNAMNRPCLWDKL--DAGDIQISDSLFIN-----ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-------GD 836 (847)
Q Consensus 771 ~~~~~~~~~l~~~~--~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-------~D 836 (847)
.+.......+|... .++.|.+|+..... ..+....... . ...+.+.+++ ++..|++++ .|
T Consensus 375 ~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g----~~~~~v~~~p-dg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 375 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-G----GGSLFIKTHP-KSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-C----SCCCCEECCT-TCCEEEECCTTCSSHHHH
T ss_pred ccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-C----CCceEEEcCC-CCCcEEEecCCCCCcccC
Confidence 33323335566554 56899999965411 1111111111 1 1223344455 688899887 37
Q ss_pred CeEEEEEccCC
Q 003106 837 SSLSSFIAGTY 847 (847)
Q Consensus 837 G~V~vW~~gty 847 (847)
++|+|||+.++
T Consensus 449 ~~v~v~d~~~~ 459 (543)
T 1nir_A 449 QSVAVFDLKNL 459 (543)
T ss_dssp TCEEEEETTCT
T ss_pred ceEEEEECCCC
Confidence 89999998763
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=4.6e-17 Score=185.38 Aligned_cols=200 Identities=14% Similarity=0.069 Sum_probs=142.5
Q ss_pred CcceEEEecCCCeEeecCCC--eEEeCCCCchh-------hcccccc--ccCCCCCceEE-eeecCC--------CCCCC
Q 003106 555 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELR-------ADMDRLV--EDGSLDDNVES-FLSHDD--------TDPRD 614 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~-------~~~~~~~--~~g~~d~~v~~-~~s~d~--------t~~~d 614 (847)
....+++++++..+++++.+ ++|+....... ....... ....+...+.. .+++++ +++.|
T Consensus 38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 35678888888888776655 55654321100 0000000 00111222332 344444 36679
Q ss_pred CcEEEEeccCC--------ceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE
Q 003106 615 AGGRGMDVSQG--------FSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685 (847)
Q Consensus 615 ~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~ 685 (847)
+.|++||+.++ ..+..+..+.+|...|++|+|+|+ +.+|++|+.||+|+|||++++..+....+|...|++
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999998754 223345667789999999999997 899999999999999999988777777789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeCCCc------EEEEE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE------IRYWS 752 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~Dg~------V~iWD 752 (847)
++|+|+|++|++|+.||+|++||++ +.....+..| ...|.+++|++++..+++++..||. +++||
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 9999999999999999999999998 2344555433 2379999999987766555656643 89999
Q ss_pred CCCC
Q 003106 753 INNG 756 (847)
Q Consensus 753 ~~~~ 756 (847)
+++.
T Consensus 276 l~~~ 279 (434)
T 2oit_A 276 LPKK 279 (434)
T ss_dssp CCCT
T ss_pred eccC
Confidence 9865
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=2.7e-16 Score=171.64 Aligned_cols=230 Identities=11% Similarity=0.083 Sum_probs=169.3
Q ss_pred CcceEEEecCCCeEeecC----------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEE
Q 003106 555 SKPLMMFGTDGAGTLTSP----------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRG 619 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~----------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~v 619 (847)
....++|++||+.+++.. ...+||..+++....+.. +.. ...+.+++++ +...++.|.+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~--~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLK--PFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSC--CCSEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCC--cceEEECCCCCEEEEEecCCCEEEE
Confidence 345789999999876654 236799988876554332 111 1112233333 3345679999
Q ss_pred EeccCCceeeEeEEeecCCC---------CEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 620 MDVSQGFSFKEANSVRASTS---------KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~---------~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
||+.++ +.+..+..+.. .+.+++|+||+++|++++ .++.|.+||+++++.+..+..+...+.+++|
T Consensus 116 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 116 IDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999887 33444444332 278999999999888776 4789999999999999888767777899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+|++++|++++.++.|.+||+.+ +..+..+.. +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999999999998 666666543 5567889999999998887777779999999999998888876
Q ss_pred CCceEEEEEec-CCCEEEEE-cCCCcEEEEcCCc
Q 003106 765 ESFCCWCVNAM-NRPCLWDK-LDAGDIQISDSLF 796 (847)
Q Consensus 765 ~~~~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~ 796 (847)
.... .+.+. +...+|.. ..++.|.+||...
T Consensus 272 ~~~~--~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 272 PESL--AVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp SSCC--CEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCCc--eEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 5543 23333 33345544 4688999999653
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=2.1e-16 Score=171.41 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=174.0
Q ss_pred EEecCCCeEeec----CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeE
Q 003106 560 MFGTDGAGTLTS----PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 560 ~~s~dG~~~~~~----~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
+|..++..++.. +...+||..+++....+. .+ . ....+.+++++ ++..++.|.+||+.++.. .
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----~~-~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT----LG-Y-DFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPP--K 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE----CC-C-CEEEEEECSSSCEEEEEESTTCEEEEEECSSSSC--E
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE----cc-C-CcceEEEcCCCCEEEEEeCCCCeEEEEECCCCce--e
Confidence 455555554332 234889999887755432 11 1 11233344444 334477999999988732 1
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCc-EE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKT-VR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~-V~ 705 (847)
...+..+...+.+++|+|||++|+++..++ .|++||+++++.+..+..+ ..+.+++|+|++++|+++ ..++. |+
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEE
Confidence 455666666666699999999999655553 8999999999988887654 457999999999866554 56688 99
Q ss_pred EEECCCCCceE---EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEEecCC-C
Q 003106 706 VWDADNPGYSL---RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVNAMNR-P 778 (847)
Q Consensus 706 iWD~~~~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~~~~~-~ 778 (847)
+|+++..+... .........+.+++|+|+|+++++++..++.|++||+++++. +..+..+ ..+..+.+..+ .
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 99998644332 112234456899999999998888888899999999999988 7777654 33445555544 3
Q ss_pred EEEEEc-CCCcEEEEcCCcccceeeeccccc--CCCCccccccccccccCCCcEE-EEEeCCCeEEEEEccC
Q 003106 779 CLWDKL-DAGDIQISDSLFINANIFCGLGWY--GSDEIPAPSWKVSCRSCRECCL-YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~l-~sGs~DG~V~vW~~gt 846 (847)
.+|... .++.|.+|+............... ...........+.+.+ ++.+| +++..++.|+||++..
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEEecC
Confidence 355544 466788998653322112111110 0001111101123334 45555 5556677999999853
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.75 E-value=1.5e-16 Score=186.36 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=193.0
Q ss_pred cceEEEecCCCeEeecCCC---eEEeC--CCCchhhccccccccCCCCCceEEeeec----CC-----CCCCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDD--KDLELRADMDRLVEDGSLDDNVESFLSH----DD-----TDPRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~--~~~~~~~~~~~~~~~g~~d~~v~~~~s~----d~-----t~~~d~~v~vwd 621 (847)
...+.|+|||+++++.+.+ .+||+ .++++...+. .+. ....+.+++ |+ ....++.|.+||
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 5678899999999876544 88999 6766544332 111 112233444 44 223478999999
Q ss_pred ccCCceeeEeEEeec----------C-CCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeE--EEccCCCCeEEEE
Q 003106 622 VSQGFSFKEANSVRA----------S-TSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVR 687 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~----------h-~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~I~~v~ 687 (847)
..++. ++.++.. | ...|.++.|+++++. +++...+++|.+||+.+.+.+. ++ .+...+.++.
T Consensus 255 ~~t~~---~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~ 330 (543)
T 1nir_A 255 GETLE---PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGG 330 (543)
T ss_dssp TTTCC---EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEE
T ss_pred ccccc---cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCce
Confidence 98763 4444432 2 337999999997664 5666788999999998766544 44 4667789999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCC------
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINN------ 755 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~------ 755 (847)
|+|++++|++++ .+++|++||+.+ ++++.++.. |.+....+ ++|++..+++++. .|++|+|||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred ECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 999999876655 689999999998 777777764 65444443 5788667887876 689999999998
Q ss_pred -CceEEEEeeCCceEEEEEec-CCCEEEEEcC-------CCcEEEEcCCcccce-eee-cccccCCCCcccccccccccc
Q 003106 756 -GSCTRVFKVESFCCWCVNAM-NRPCLWDKLD-------AGDIQISDSLFINAN-IFC-GLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 756 -~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------~g~i~i~d~~~~~~~-~~~-~~~~~~~~~~~~~~w~~~~~~ 824 (847)
++++.++..+...+..+.+. +...+|.... ++.|.+||....... ... ...+.+.......+|.+.+.+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 89999999988776666655 4567888762 668999997654433 111 111222223345677777777
Q ss_pred CCCcEEEEE-----eCCCeEEEEEccCC
Q 003106 825 CRECCLYTG-----CGDSSLSSFIAGTY 847 (847)
Q Consensus 825 ~~~~~l~sG-----s~DG~V~vW~~gty 847 (847)
++..++++ +.|+.|.|||..|.
T Consensus 489 -~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 -RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp -SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred -CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 45555544 24899999998763
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=4.6e-17 Score=185.34 Aligned_cols=158 Identities=11% Similarity=0.140 Sum_probs=124.7
Q ss_pred cCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------ce---eEEEccCCCCeEEEEEcCC-CCEEEEEe
Q 003106 636 ASTSKVICCHFSSDGKLLA----TGGHDKKAVLWHTDTL--------KS---KTNLEEHSSLITDVRFSPS-MPRLATSS 699 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~La----sgs~Dg~V~vwd~~~~--------~~---~~~l~~h~~~I~~v~fsp~-~~~Lasgs 699 (847)
.|...|++|+|++++++|+ +|+.|++|+|||+.++ +. +..+.+|...|++|+|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4677899999999999999 7889999999998654 22 4556679999999999998 78999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------ceEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------FCCWCV 772 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------~~v~~~ 772 (847)
.||+|+|||+++ +..+....+|...|++++|+|+|.. |++|+.||+|++||++ ++....+..+. ..+.++
T Consensus 170 ~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 999999999998 5556666778999999999999875 5589999999999999 66666665432 267777
Q ss_pred EecCCCEEEEEc--CCC------cEEEEcCCc
Q 003106 773 NAMNRPCLWDKL--DAG------DIQISDSLF 796 (847)
Q Consensus 773 ~~~~~~~l~~~~--~~g------~i~i~d~~~ 796 (847)
.+.....+..+. .+| .+++|+...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 776665554322 222 277888553
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=7.2e-16 Score=167.10 Aligned_cols=221 Identities=10% Similarity=0.078 Sum_probs=147.8
Q ss_pred CCcEEEEecc--CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCceeEEEccCCCCeEEEE
Q 003106 614 DAGGRGMDVS--QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTD---TLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 614 d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~---~~~~~~~l~~h~~~I~~v~ 687 (847)
++.+++|++. ++ .++.+..+..+. .+.+++|+|++++|++++. ++.|++||+. +.+.+..+..+ ..+.+++
T Consensus 59 ~~~v~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDG-ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTC-CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCE
T ss_pred CCeEEEEEecCCCC-ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEE
Confidence 4899999997 44 555666666554 8899999999998877765 8899999994 44455555444 4589999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEE----Eecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--Cce-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLR----TFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSC- 758 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~----~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~~- 758 (847)
|+|++++|++++ .|+.|++||+.+.+.... .+.. ....+.+++|+|+++++++++..++.|++||+.. ++.
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999888887 899999999986343321 2222 3457889999999998877777899999999953 433
Q ss_pred -EEEEeeC------CceEEEEEecCCC-EEE-EEcCCCcEEEEcCCcc--cceeeecccccCCCCccccccccccccCCC
Q 003106 759 -TRVFKVE------SFCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFI--NANIFCGLGWYGSDEIPAPSWKVSCRSCRE 827 (847)
Q Consensus 759 -~~~~~~~------~~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 827 (847)
+..+... ...+..+.+.... .++ ....++.|.+|+.... .......... ........|+ + ++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~s----~-dg 288 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVD----H-SG 288 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEEC----T-TS
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccceEEEC----C-CC
Confidence 2233211 1234456655443 455 5557889999996521 1111211111 1112333333 4 56
Q ss_pred cEEEEEe-CCCeEEEEEc
Q 003106 828 CCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 828 ~~l~sGs-~DG~V~vW~~ 844 (847)
.+|++++ .|+.|.+|++
T Consensus 289 ~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp SEEEEECTTTCEEEEEEE
T ss_pred CEEEEecCCCCeEEEEEE
Confidence 6666666 7899999965
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=3.9e-16 Score=164.58 Aligned_cols=224 Identities=9% Similarity=-0.027 Sum_probs=153.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccC-CCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h-~~~I~~v~ 687 (847)
.++.++.|++||+.++. ...+..|...|.+++|+|||++|++++ ++.|++||+++ ++....+..| ...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTE----EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCc----eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 45678999999998772 234556889999999999999999987 78999999998 8877666666 36789999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEEEee
Q 003106 688 FSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~ 764 (847)
|+|++++|++++ .++.++||+++........+..+. .+.+++|+|+++.++++++.|+.++||++.. +.....+..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999998 445666665543233345555443 4899999999998887888899999998642 233455556
Q ss_pred CCceEEEEEecCCC-EEE-EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC------
Q 003106 765 ESFCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD------ 836 (847)
Q Consensus 765 ~~~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D------ 836 (847)
+...+.++.+.... .++ ....++.+.+|+............. +. ...+.+.+.+ ++.+|++++.|
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~s~-dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SA----YGDWFPHPSP-SGDKVVFVSYDADVFDH 243 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CS----EEEEEEEECT-TSSEEEEEEEETTCCSC
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CC----cccCCeEECC-CCCEEEEEEcCCCCCcc
Confidence 66677777776443 344 3445778888874322211111111 11 1222333334 56777777665
Q ss_pred -----CeEEEEEccC
Q 003106 837 -----SSLSSFIAGT 846 (847)
Q Consensus 837 -----G~V~vW~~gt 846 (847)
+.|++|++.+
T Consensus 244 ~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDG 258 (297)
T ss_dssp CSSEEEEEEEEETTS
T ss_pred cccCceEEEEEecCC
Confidence 5699998753
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.70 E-value=6.3e-16 Score=187.31 Aligned_cols=280 Identities=10% Similarity=0.016 Sum_probs=178.4
Q ss_pred CCcceEEEecCCCeEeecCC---------CeEEeCCCCchhhcccccccc----------CCC---------CCceEEee
Q 003106 554 TSKPLMMFGTDGAGTLTSPS---------NQLWDDKDLELRADMDRLVED----------GSL---------DDNVESFL 605 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~---------~~iWD~~~~~~~~~~~~~~~~----------g~~---------d~~v~~~~ 605 (847)
.....++|+|||+++++.+. ..+||+.+++....+...... ... .....+.+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999998877543 468999888654332211000 000 00112234
Q ss_pred ecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC
Q 003106 606 SHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 606 s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
++|+ ....++.|.+||+.++.. .....+..|...+.+++|+|||++|++++ ++.|++||+.+++.......+...
T Consensus 117 SpDg~~l~~~~~~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLGGELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeCCcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 5554 111238899999987610 02345667888999999999999999988 469999999988776555444432
Q ss_pred ----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 003106 683 ----------------ITDVRFSPSMPRLATSSFDK---------------------------------TVRVWDADN-P 712 (847)
Q Consensus 683 ----------------I~~v~fsp~~~~Lasgs~Dg---------------------------------~V~iWD~~~-~ 712 (847)
+.+++|+|||++|++++.|+ .|++||+.+ .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788999976 4
Q ss_pred CceEEEec--cCCCCeEEEEEecCCCeEEEEEe----CCCcEEEEECCCCceEEEEeeCCc----eEEEEEecC-CCEEE
Q 003106 713 GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINNGSCTRVFKVESF----CCWCVNAMN-RPCLW 781 (847)
Q Consensus 713 ~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s----~Dg~V~iWD~~~~~~~~~~~~~~~----~v~~~~~~~-~~~l~ 781 (847)
. ...... .|...+.+++| |||+.+++++. .+..|++||+.++++...+..+.. .+..+.+.. ...++
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 275 Q-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp C-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred c-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 3 333322 47788999999 99997775554 357899999999998887766542 222334432 33677
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCcccc-ccccccccCCCc-EEEEEeCCC--eEEEEEcc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAP-SWKVSCRSCREC-CLYTGCGDS--SLSSFIAG 845 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~-~l~sGs~DG--~V~vW~~g 845 (847)
....++.+.+|....... ..... .+...+... .|+ + ++. ++++++.|+ .++||++.
T Consensus 353 ~~~~~g~~~l~~~~~~~~--~~~l~-~~~~~v~~~~~~s----~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK--AAALT-HGNWSVDELLAVD----E-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSSCEEEEECSSSC--EEESC-CSSSCEEEEEEEE----T-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred EecCCCccEEEEEcCCCC--eeeee-ecceEEEeEeEEe----C-CCCEEEEEEeCCCCceEEEEEEE
Confidence 777788766765332111 11111 111111111 133 3 444 556666666 89999874
No 137
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=7.1e-16 Score=174.39 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=155.6
Q ss_pred CCcEEEEec--cCCceeeEeEEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCc
Q 003106 614 DAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLK 671 (847)
Q Consensus 614 d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~l~fsp--------------dg~~Lasgs~D------g~V~vwd~~~~~ 671 (847)
+..+++||+ .++. ......+.+|...|.++++++ .+..|+.++.+ +.|++||++. .
T Consensus 92 ~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~ 169 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y 169 (415)
T ss_dssp EEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C
T ss_pred EEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C
Confidence 348999999 8773 222356788998888888775 25666666654 7999999984 5
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-
Q 003106 672 SKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE- 747 (847)
Q Consensus 672 ~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~- 747 (847)
.+..+..|...|.+++|+|+|++|++++.|+ .|++||+++ +.+ ..+..|...+.+++|+|+|+.++++++.|+.
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677888999999999999999999999875 999999998 554 3566788899999999999988778877665
Q ss_pred -EEEEECCCCceEEEEeeCCceEEEEEecCCC-EEEEEcC-CC--cEEEEcCCcccceeeecccccCCCCcccccccccc
Q 003106 748 -IRYWSINNGSCTRVFKVESFCCWCVNAMNRP-CLWDKLD-AG--DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC 822 (847)
Q Consensus 748 -V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 822 (847)
|++||++++++ ..+..+...+.++.+..+. .++..+. ++ .|.+|+........+. .+........|
T Consensus 248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~----~~~~~~~~~~~---- 318 (415)
T 2hqs_A 248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT----WEGSQNQDADV---- 318 (415)
T ss_dssp EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----CSSSEEEEEEE----
T ss_pred eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe----cCCCcccCeEE----
Confidence 99999998876 5566666777788776543 4554444 44 4666675432211111 11112222233
Q ss_pred ccCCCcEEEEEeCC---CeEEEEEccC
Q 003106 823 RSCRECCLYTGCGD---SSLSSFIAGT 846 (847)
Q Consensus 823 ~~~~~~~l~sGs~D---G~V~vW~~gt 846 (847)
.+ ++.+|++++.| +.|++|++.+
T Consensus 319 sp-dG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 319 SS-DGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CT-TSSEEEEEEECSSCEEEEEEETTT
T ss_pred CC-CCCEEEEEECcCCceEEEEEECCC
Confidence 34 56777776654 5899999754
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=3.4e-15 Score=161.73 Aligned_cols=230 Identities=10% Similarity=0.021 Sum_probs=149.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCc--eeEEEccCCCCeEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDV 686 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~V~vwd~~--~~~--~~~~l~~h~~~I~~v 686 (847)
..++.|++||+......+.+..+ .|...+.+++|+|++++|++++.+ +.|++|+++ +++ .+..+..+. .+.++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 34788999998643244444443 477789999999999999988886 999999998 554 334454444 78999
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCC--CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEE--
Q 003106 687 RFSPSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR-- 760 (847)
Q Consensus 687 ~fsp~~~~Lasgs~-Dg~V~iWD~~~~--~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~-- 760 (847)
+|+|++++|++++. ++.|++||+... ...+..+..+ ..+.+++|+|+++.+++++..|+.|++||+.+ ++...
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 99999998877665 889999999521 2344444433 46899999999997776665899999999998 65432
Q ss_pred --EEeeC-CceEEEEEecCCC-EEEE-EcCCCcEEEEcCCccccee--eecccccCCC-CccccccccccccCCCcEE-E
Q 003106 761 --VFKVE-SFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINANI--FCGLGWYGSD-EIPAPSWKVSCRSCRECCL-Y 831 (847)
Q Consensus 761 --~~~~~-~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l-~ 831 (847)
.+... ...+.++.+.... .++. ...++.+.+|+........ .......... ........+.+.+ ++.+| +
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v 247 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYA 247 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEE
Confidence 22322 3356666665444 3544 4478889999964322111 1111100000 0011111233334 45444 4
Q ss_pred EEeCCCeEEEEEcc
Q 003106 832 TGCGDSSLSSFIAG 845 (847)
Q Consensus 832 sGs~DG~V~vW~~g 845 (847)
++..|+.|++|++.
T Consensus 248 ~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 248 CDRTASLITVFSVS 261 (343)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EecCCCEEEEEEEc
Confidence 66689999999975
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=1.3e-15 Score=183.82 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=141.2
Q ss_pred cceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------------CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------------TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------------t~~~d~~v~vw 620 (847)
...++|+|||++++++. ..++||+.+++....+..... .......+.+++|+ ....++.+.+|
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 45678999999776532 337899988865433221100 00001122233443 11235889999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe-----------------
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI----------------- 683 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I----------------- 683 (847)
|+.++. .+.+....+|...|.+++|+|||++||+++. +.|++||+.+++.......+...|
T Consensus 97 d~~~~~-~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGD-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCC-CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCc-eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 999873 3444444556667999999999999999986 799999999888776665544333
Q ss_pred -EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCCceEEEeccC------
Q 003106 684 -TDVRFSPSMPRLATSSFDK----------------------------------TVRVWDADNPGYSLRTFMGH------ 722 (847)
Q Consensus 684 -~~v~fsp~~~~Lasgs~Dg----------------------------------~V~iWD~~~~~~~~~~~~~h------ 722 (847)
.+++|+|||++|++++.|+ +|++||+.+ +.....+..+
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCc
Confidence 7899999999999887553 799999987 4444555544
Q ss_pred CCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCceEEEEee
Q 003106 723 SASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 723 ~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~~~~~~~~ 764 (847)
...|.+++|+|||+.+++.... +..|++||+.++++...+..
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 5678999999999855433332 35799999999988777654
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.66 E-value=1.4e-14 Score=156.84 Aligned_cols=222 Identities=11% Similarity=0.028 Sum_probs=152.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-eEEEccCCCCeEEEEEc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fs 689 (847)
..++.|++||+.++ +.+..+..+...+ +++|+||+++|++++. ++.|++||+.+++. ...+..+...+.+++|+
T Consensus 17 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s 92 (331)
T 3u4y_A 17 QHLRRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDIT 92 (331)
T ss_dssp GGGTEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEEC
T ss_pred cCCCeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEEC
Confidence 45678999999887 3444455566667 9999999997776665 89999999999887 77777777766669999
Q ss_pred CCCCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEE---
Q 003106 690 PSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVF--- 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~--- 762 (847)
|++++|+++..++ .|++||+.+ +..+..+.. ...+.+++|+|+|+++++++..++. |.+||+.....+...
T Consensus 93 ~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 93 PDDQFAVTVTGLNHPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp TTSSEEEECCCSSSSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCEEEEecCCCCcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 9999999555553 899999998 666666654 4557999999999988878777788 999999864433211
Q ss_pred -eeCCceEEEEEecCCC-EEEE-EcCCCcEEEEcCCcccc-eeeecccccCCCCccccccccccccCCCcEE-EEEeCCC
Q 003106 763 -KVESFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINA-NIFCGLGWYGSDEIPAPSWKVSCRSCRECCL-YTGCGDS 837 (847)
Q Consensus 763 -~~~~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l-~sGs~DG 837 (847)
.........+.+..+. .+|. ...++.|.+|+...... ....... .... ...+.+.+ ++.++ ++...++
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~----~~~~~~sp-dg~~l~v~~~~~~ 243 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNL----PGTIVVSR-DGSTVYVLTESTV 243 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSC----CCCEEECT-TSSEEEEECSSEE
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCC----CceEEECC-CCCEEEEEEcCCC
Confidence 1223345666666544 3554 44678899999653322 0011111 1111 22233334 56645 4555688
Q ss_pred eEEEEEccC
Q 003106 838 SLSSFIAGT 846 (847)
Q Consensus 838 ~V~vW~~gt 846 (847)
.|.+|+..+
T Consensus 244 ~i~~~d~~~ 252 (331)
T 3u4y_A 244 DVFNFNQLS 252 (331)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 999999754
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.65 E-value=3.7e-14 Score=154.52 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=159.0
Q ss_pred cceEEEecCCCeEeecCC----CeEEeCCCCchhhcccccccc----CCCCCceEEeeecCC-----CC-CCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLTSPS----NQLWDDKDLELRADMDRLVED----GSLDDNVESFLSHDD-----TD-PRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~----~~iWD~~~~~~~~~~~~~~~~----g~~d~~v~~~~s~d~-----t~-~~d~~v~vwd 621 (847)
...++|++||+.+++... ..+||..+++....+..-... +.......+.+++++ ++ ..++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 356789999996655432 378999988765543221000 000001223344443 11 3477899999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc----CCCCeEEEEEcCCCCEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~v~fsp~~~~Las 697 (847)
+.++ +.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++|++
T Consensus 171 ~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 171 GGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp TTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred CCCC---ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 9876 45555655666789999999999999999999999999999998887764 5567889999999998877
Q ss_pred EeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 698 SSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 698 gs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
++. ++.|.+||+.+ +..+..+.... ..+++|+|+++++++++..++.|.+||+.+++.+..+.... .+.++.+..
T Consensus 248 ~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 323 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA 323 (353)
T ss_dssp EESSSSEEEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT
T ss_pred EeCCCCEEEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC
Confidence 665 59999999988 66666665433 35699999999888788789999999999999888877654 455565543
Q ss_pred CC-EEEEEcC
Q 003106 777 RP-CLWDKLD 785 (847)
Q Consensus 777 ~~-~l~~~~~ 785 (847)
+. .+|....
T Consensus 324 dg~~l~v~~~ 333 (353)
T 3vgz_A 324 DGKTLYVSVK 333 (353)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 33 3444433
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=9.7e-15 Score=153.83 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=145.7
Q ss_pred CeEEeCCCCchhhccccccccCCCCCce-EEeeecCC---CCCCCCcEEEEeccC-CceeeEeEEeecC-CCCEEEEEEc
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGGRGMDVSQ-GFSFKEANSVRAS-TSKVICCHFS 647 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v~vwd~~~-~~~~~~~~~l~~h-~~~V~~l~fs 647 (847)
..+||+.+++....... ...+ .+.+++++ ..+.++.|.+||+.+ +. ....+..| ...|.+++|+
T Consensus 24 i~~~d~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 24 IEIFNIRTRKMRVVWQT-------PELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS---PEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEETTTTEEEEEEEE-------SSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS---CEECCCTTCCCBCSCCEEC
T ss_pred EEEEeCCCCceeeeccC-------CcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC---ceEeccccccccccceEEC
Confidence 37899888765432211 1112 22334444 123477999999988 62 23334444 4788999999
Q ss_pred CCCCEEEEEe--CCCcEEEEEC--CCCceeEEEccCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceEEEeccC
Q 003106 648 SDGKLLATGG--HDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGH 722 (847)
Q Consensus 648 pdg~~Lasgs--~Dg~V~vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h 722 (847)
||+++|++++ .++.++||.+ .++. ...+..+. .+.+++|+|++++|+ +++.|+.++||+++........+..|
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 9999999999 3455555554 4444 34454443 489999999999876 77789999999976434556677778
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEEEecCCC-EEEEEcCC-----------CcE
Q 003106 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCVNAMNRP-CLWDKLDA-----------GDI 789 (847)
Q Consensus 723 ~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~-----------g~i 789 (847)
...+.+++|+|+++.+++++..|+.++||++. .+..+..+..+...+.++.+.... .++....+ +.|
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 88999999999999777666679999999987 566677777777777777766443 44444433 458
Q ss_pred EEEcCCc
Q 003106 790 QISDSLF 796 (847)
Q Consensus 790 ~i~d~~~ 796 (847)
.+|+...
T Consensus 252 ~~~d~~~ 258 (297)
T 2ojh_A 252 QLMDMDG 258 (297)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 8888654
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.63 E-value=2.6e-14 Score=154.27 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=111.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC-C-CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcc-C----CCCe
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST-S-KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-H----SSLI 683 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~-~-~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~-h----~~~I 683 (847)
..++.|++||+.++ +.+..+.... . .+.+++|+||+++|+ +++.++.|++||+.+++.+..+.. + ...+
T Consensus 8 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T 1pby_B 8 ARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp ETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred CCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence 45788999999877 3444444222 2 588999999998764 555678999999999998877753 2 2267
Q ss_pred EEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 684 TDVRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs------------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+++|+|++++|++++ .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++ ++.|++|
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~ 159 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVM 159 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEE
Confidence 8999999999998886 579999999987 666666654 4568889999999876644 6899999
Q ss_pred ECCCCceEEEEee
Q 003106 752 SINNGSCTRVFKV 764 (847)
Q Consensus 752 D~~~~~~~~~~~~ 764 (847)
|+++++.+..+..
T Consensus 160 d~~~~~~~~~~~~ 172 (337)
T 1pby_B 160 DPEAGTLVEDKPI 172 (337)
T ss_dssp ETTTTEEEEEECS
T ss_pred ECCCCcEeeeeec
Confidence 9999887766543
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.63 E-value=3.5e-14 Score=179.28 Aligned_cols=186 Identities=15% Similarity=0.030 Sum_probs=137.0
Q ss_pred CcceEEEe-cCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEE-EEeccCC
Q 003106 555 SKPLMMFG-TDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGR-GMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s-~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~-vwd~~~~ 625 (847)
....++|+ |||+.+++.... .+||+.++...... .. ....+. ..++ |+ ....+..+. +||+.++
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~----~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP----EP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS----CC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc----CC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 46789999 999988776544 66777766533210 00 000111 1111 21 111145666 7788765
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC---
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--- 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--- 702 (847)
. ...+.+|...+.+++|+|||++|++++.|+.|++||+.+++....+.+|...|.+++|+|||++|++++.++
T Consensus 370 -~---~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 370 -K---AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp -C---EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred -C---ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 2 233447889999999999999999999999999999999998888878999999999999999998887654
Q ss_pred -------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 703 -------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 703 -------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.|++||+.+ +. +..+..|...+.+++|+|+|+.++ +++.++.+++|+..
T Consensus 446 ~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l~-~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRV 501 (1045)
T ss_dssp TCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSS
T ss_pred ccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEEE-EEecccCCcCcchh
Confidence 899999987 44 677888888899999999998665 66666777777654
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.62 E-value=5.6e-14 Score=153.65 Aligned_cols=225 Identities=10% Similarity=0.076 Sum_probs=148.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CC--ceeEEEcc---------C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TL--KSKTNLEE---------H 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~--~~~~~l~~---------h 679 (847)
.++.|.+||+.++ ..+.+..+..+...+.+++|+|||++|++++ .++.|++||+. ++ +.+..+.. +
T Consensus 61 ~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 61 DEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred CCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence 3678999999776 5666777677888899999999999998888 68999999996 33 23333322 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN- 755 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~- 755 (847)
...+.+++|+|+++.+++...++.|++||+...+... ..+.. ....+..++|+|+|+++++++..++.|++||+..
T Consensus 140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 2348899999999955666678899999998424332 22222 2346889999999998887888899999999874
Q ss_pred -CceE--EEEeeCC------ceEEEEEecCCC-EEE-EEcCCCcEEEEcCCccc-ceeeecccccCCCCccccccccccc
Q 003106 756 -GSCT--RVFKVES------FCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFIN-ANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 756 -~~~~--~~~~~~~------~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
++.. ..+.... ..+..+.+..+. .+| +...++.|.+|+..... ........ .+.... +.+.+.
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~----~~~~~s 294 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFP----RDFDLD 294 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCC----CEEEEC
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCc----CeEEEC
Confidence 5432 2332222 346667666554 354 44567889999864211 11111111 111112 233333
Q ss_pred cCCCcEEEEEe-CCCeEEEEEc
Q 003106 824 SCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 824 ~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
+ ++.+|++++ .++.|.+|++
T Consensus 295 p-dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 295 P-TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp T-TSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEEEcCCCcEEEEEE
Confidence 4 566666665 5599999955
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.62 E-value=2.8e-14 Score=171.91 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=168.8
Q ss_pred CCcceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC----
Q 003106 554 TSKPLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ---- 624 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~---- 624 (847)
..+..++|+|| +.+++.. ...+||+.+++....... .+ . ...+.+++|+ ....++.|.+||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~---~~-~--~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDT---NE-E--TASLDFSPVGDRVAYVRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECC---TT-C--CTTCEECTTSSEEEEEETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCC---cc-c--ccCCcCCCCCCEEEEEECCeEEEEecCccccc
Confidence 35678999999 5544433 338899988765432111 00 0 1111233443 123568999999987
Q ss_pred -CceeeEeEEeecCCCC--------------EEEEEEcCCCCEEEEEe--------------------------------
Q 003106 625 -GFSFKEANSVRASTSK--------------VICCHFSSDGKLLATGG-------------------------------- 657 (847)
Q Consensus 625 -~~~~~~~~~l~~h~~~--------------V~~l~fspdg~~Lasgs-------------------------------- 657 (847)
+. .......+... +.+++|+|||++|++++
T Consensus 155 ~g~---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSR---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCC---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCC---cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 62 22222222222 58999999999999998
Q ss_pred -CCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceEEEec-cCCC---C
Q 003106 658 -HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFM-GHSA---S 725 (847)
Q Consensus 658 -~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~-~h~~---~ 725 (847)
.+..|++||+++++...... .|...|.+++|+|||++|++++.|+ .|++||+.++......+. .+.. .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999999887654432 4667899999999999999887775 899999998313332222 2222 2
Q ss_pred eEEEEEec--CCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEE-EEecCC-CEE-EEEcCCC----cEEEEcCC
Q 003106 726 VMSLDFHP--NKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWC-VNAMNR-PCL-WDKLDAG----DIQISDSL 795 (847)
Q Consensus 726 V~sl~fsp--~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~-~~~~~~-~~l-~~~~~~g----~i~i~d~~ 795 (847)
+.+++|+| +|+ ++++++.|+.++||++. ++..+..+..+...+.. +.+..+ ..+ +....++ .|..|+..
T Consensus 312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp CSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred cCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 46789999 887 66788889999999886 66777777776665654 455433 334 4444444 45555543
Q ss_pred cccceeeecccccCCCCccccccccccccCCCcEEEEE-eCC---CeEEEEEccC
Q 003106 796 FINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGD---SSLSSFIAGT 846 (847)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~D---G~V~vW~~gt 846 (847)
......+ . .... ++.+.+.+ ++.+|+.. +.+ +.|++|++.+
T Consensus 391 ~~~~~~l---~--~~~~----~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 391 GGKTKDL---T--PESG----MHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp CCCCEES---C--CSSS----EEEEEECT-TSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCCceec---c--CCCc----eEEEEECC-CCCEEEEEecCCCCCcEEEEEECCC
Confidence 2211111 1 1111 23333334 45555554 433 5699998753
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.59 E-value=2.6e-14 Score=173.14 Aligned_cols=227 Identities=13% Similarity=0.061 Sum_probs=154.3
Q ss_pred cceEEEecCCCeEeecCC--CeEEeCCCC---chhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPS--NQLWDDKDL---ELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~--~~iWD~~~~---~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
+..++|+|||+++++... ..+||+.++ .... +... ......+.+++|+ ....++.|.+||+.++.
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~----l~~~--~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~- 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ----LTHG--EGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR- 183 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB----CCCS--SSCEEEEEECTTSSEEEEEETTEEEEEETTTTE-
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE----cccC--CcccccccCCCCCCEEEEEeCCcEEEEecCCCC-
Confidence 467899999998877654 478999887 3322 1111 0111223355555 12234589999998762
Q ss_pred eeEeEEeecCCCC----------------EEEEEEcCCCCEEEEEeCCC-------------------------------
Q 003106 628 FKEANSVRASTSK----------------VICCHFSSDGKLLATGGHDK------------------------------- 660 (847)
Q Consensus 628 ~~~~~~l~~h~~~----------------V~~l~fspdg~~Lasgs~Dg------------------------------- 660 (847)
.......+... +.+++|+|||++|++++.|+
T Consensus 184 --~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 --QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp --EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred --EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222233332 47899999999999998776
Q ss_pred --cEEEEECCC-CceeEEEc--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceEEEeccCCC----Ce
Q 003106 661 --KAVLWHTDT-LKSKTNLE--EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSA----SV 726 (847)
Q Consensus 661 --~V~vwd~~~-~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~~~~~~~~~~~h~~----~V 726 (847)
.|++||+.+ ++...... .|...|.+++| |||++|++++. +..|++||+.+ +.+...+..+.. .+
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcC
Confidence 789999988 87655443 47788999999 99999987654 56799999998 666666655543 45
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEE-EecCC-C-EEEEEcCCC--cEEEEcCC
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCV-NAMNR-P-CLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~-~~~~~-~-~l~~~~~~g--~i~i~d~~ 795 (847)
.+++|+|+|+ ++++++.||.++||.+. .+. +..+..+...+..+ .+..+ . .++....++ .+.+|+..
T Consensus 340 ~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 340 NSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp SCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 6899999998 77788889988888776 345 67777666666554 24433 3 445555555 77888743
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=1.3e-13 Score=151.68 Aligned_cols=234 Identities=12% Similarity=0.068 Sum_probs=147.1
Q ss_pred CcceEEEecCCCeEeecCC-----C--eEEeCCC--CchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEE
Q 003106 555 SKPLMMFGTDGAGTLTSPS-----N--QLWDDKD--LELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGM 620 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~-----~--~iWD~~~--~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vw 620 (847)
....++|+|||+.+++.+. . .+|++.. +++.. +...... ....+.+.. ++ +...++.+.+|
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~~~~~~---~~~p~~~~~-dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LNTQKTM---GADPCYLTT-NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE-EEEEECS---SSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE-eeEeccC---CCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence 4456899999998877554 2 5688764 33221 1111111 111111111 22 23457899999
Q ss_pred eccCCceeeEeEEeec-----------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-------ee------EE
Q 003106 621 DVSQGFSFKEANSVRA-----------STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLK-------SK------TN 675 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~-----------h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~-------~~------~~ 675 (847)
++.....+..+..... +...+.+++|+|||++|++++ .++.|++|+++... .. ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975433332222111 233468999999999776655 48899999987433 21 11
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEe---ccCCCCeEEEEEecCCCeEEEEEeC-CCcE
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTF---MGHSASVMSLDFHPNKDDLICSCDG-DGEI 748 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V 748 (847)
...+...+.+++|+|++++|++++ .+++|++||+++ +.. +..+ ..+...+.+++|+|+|+++++++.. ++.|
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 223455688999999999887777 699999999986 432 2222 2334567899999999987767766 6899
Q ss_pred EEEECC--CCc--eEEEEeeCCceEEEEEecCCC-EEEEEc-CCCcEEEEcCC
Q 003106 749 RYWSIN--NGS--CTRVFKVESFCCWCVNAMNRP-CLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 749 ~iWD~~--~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~~g~i~i~d~~ 795 (847)
.+|++. +++ .+..+.. ...+.++.+..+. .++... .++.|.+|...
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 999996 454 3444444 4455666665443 466555 67788887543
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.57 E-value=1.8e-13 Score=147.63 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=153.6
Q ss_pred cceEEEecCCCeEeecC----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCC------------CCC
Q 003106 556 KPLMMFGTDGAGTLTSP----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDP------------RDA 615 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~------------~d~ 615 (847)
...++|+|||+.+++.. ...+||+.+++....+..-...........+.+++++ .+. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 45689999998765432 2378999888765433211000000001111222222 111 468
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.|.+||+.++ +.+..+.. ...+.+++|+||+++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|+++.|
T Consensus 116 ~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 188 (337)
T 1pby_B 116 RVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV 188 (337)
T ss_dssp EEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred eEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence 9999999876 33444443 4568889999999988888 68999999999998887765441 1133789999877
Q ss_pred EEEeC-CC-----------------------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 696 ATSSF-DK-----------------------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 696 asgs~-Dg-----------------------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
+.++. ++ .|.+||+.+.......+..+...+.+++|+|+++.++ ++ ++.|++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~ 265 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESF 265 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEE
Confidence 55543 22 4689999984333344556777889999999998665 44 6899999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCc
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~ 796 (847)
|+++++.+..+..+. .+.++.+.. ...++.+..++.|.+|+...
T Consensus 266 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 266 DLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp ETTTTEEEEEEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred ECCCCcCcceecCCC-ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 999999888776543 345555553 45678888889999999654
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.56 E-value=1.1e-13 Score=167.01 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=130.1
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEc--
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTS---KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLE-- 677 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~-- 677 (847)
+.|+.|++||+.++ +....+..|.. .|.+++|+|||++|++++.| +.|++||+++++. ..+.
T Consensus 34 ~~dg~i~~~d~~~g---~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~ 109 (723)
T 1xfd_A 34 EQKGTVRLWNVETN---TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP 109 (723)
T ss_dssp CSSSCEEEBCGGGC---CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT
T ss_pred eCCCCEEEEECCCC---cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC
Confidence 46789999999987 33445556654 49999999999999999875 7788999998876 3333
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC------------------eEEEEEecCCCeE
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDL 738 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~------------------V~sl~fsp~g~~l 738 (847)
.|...|.+++|+|||+.|++++. +.|++||+.+ +........+... +.+++|+|||+.|
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ccccccccccEECCCCCEEEEEEC-CeEEEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 44555899999999999999885 7999999997 5555555444333 3789999999976
Q ss_pred EEEEeCC---------------------------------CcEEEEECCCCceEEEEeeC------CceEEEEEecCCCE
Q 003106 739 ICSCDGD---------------------------------GEIRYWSINNGSCTRVFKVE------SFCCWCVNAMNRPC 779 (847)
Q Consensus 739 l~s~s~D---------------------------------g~V~iWD~~~~~~~~~~~~~------~~~v~~~~~~~~~~ 779 (847)
+++...+ ..|++||+.++++...+..+ ...+..+.+..+..
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 6443221 17999999998876666654 45677777776654
Q ss_pred EE-EEc----CCCcEEEEcCCc
Q 003106 780 LW-DKL----DAGDIQISDSLF 796 (847)
Q Consensus 780 l~-~~~----~~g~i~i~d~~~ 796 (847)
++ ... .+..|.+||...
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTT
T ss_pred EEEEEEcCCCCeEEEEEEeCCC
Confidence 43 222 224578888553
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.56 E-value=2.3e-13 Score=147.84 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=108.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCC------CCe
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHS------SLI 683 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~------~~I 683 (847)
..++.|.+||+.++ +.+..+..+. ..+.+++|+||+++++ ++..++.|++||+.+++.+..+..+. ..+
T Consensus 18 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~ 94 (349)
T 1jmx_B 18 NYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 94 (349)
T ss_dssp ETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred CCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccc
Confidence 34788999999877 3444454332 2578999999998665 55578999999999998887776432 237
Q ss_pred EEEEEcCCCCEEEEEeCC------------CcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 684 TDVRFSPSMPRLATSSFD------------KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D------------g~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.+++|+|++++|++++.+ +.|++||+.+.. ..+..+. +...+.+++|+|+++ +++ ++ +.|+
T Consensus 95 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~ 169 (349)
T 1jmx_B 95 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIY 169 (349)
T ss_dssp SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEE
T ss_pred cceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEE
Confidence 899999999999988865 899999998621 1233443 334688999999998 664 43 4599
Q ss_pred EEECCCCceEEEEeeC
Q 003106 750 YWSINNGSCTRVFKVE 765 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~ 765 (847)
+||+++++.+..+..+
T Consensus 170 ~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLR 185 (349)
T ss_dssp EECTTTCCEEEEECST
T ss_pred EEeCCCCceecccccc
Confidence 9999999887776543
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.55 E-value=4.4e-13 Score=146.51 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=143.1
Q ss_pred CCCcEEEEeccC--CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc--eeEEEccCCCCeEE
Q 003106 613 RDAGGRGMDVSQ--GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITD 685 (847)
Q Consensus 613 ~d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~--~~~~l~~h~~~I~~ 685 (847)
.++.+.+|++.. + .+..+.. ..+...+.+++|+|||+ |++++. ++.|++||+++++ .+..+..+...+.+
T Consensus 14 ~~~~i~v~~~d~~tg-~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK-TLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTT-EEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCC-eEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 345666666553 4 3333333 34556788899999999 555544 6899999998665 44455567788999
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEecc---------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 686 VRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 686 v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~~~---------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
|+|+|++++|++++ .+++|++||+...+.. +..+.. +...+.+++|+|+|+ +++++..++.|++||+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEE
Confidence 99999999998888 6899999999642332 222221 123488999999999 8878878899999999
Q ss_pred C-CCceEE--EEeeC-CceEEEEEecCCC-EEEE-EcCCCcEEEEcCCccccee--eecccccCCC-Ccccccccccccc
Q 003106 754 N-NGSCTR--VFKVE-SFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINANI--FCGLGWYGSD-EIPAPSWKVSCRS 824 (847)
Q Consensus 754 ~-~~~~~~--~~~~~-~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~-~~~~~~w~~~~~~ 824 (847)
. +++... .+... ...+..+.+..+. .++. ...++.+.+|+........ .......... ........+.+.+
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 554332 22222 2245556665444 3554 5567788898754311111 1111111110 0001122333344
Q ss_pred CCCcEE-EEEeCCCeEEEEEcc
Q 003106 825 CRECCL-YTGCGDSSLSSFIAG 845 (847)
Q Consensus 825 ~~~~~l-~sGs~DG~V~vW~~g 845 (847)
++.+| +++..++.|.+|++.
T Consensus 250 -dG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 250 -DGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp -TSCEEEEEEETTTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCEEEEEEEC
Confidence 55554 667789999999974
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.55 E-value=2.9e-13 Score=163.03 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=129.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEc-c-CCC---C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE-E-HSS---L 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~-~-h~~---~ 682 (847)
.+..|.+||+.++ ....+.....|...|.+++|+|||++|++++.|+ .|++||+.+++....+. . +.. .
T Consensus 233 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 233 HHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 4567899999887 3222222235778899999999999999988776 89999999884433332 2 222 2
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCC
Q 003106 683 ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPNKDDLICSCDGDG----EIRYWSINN 755 (847)
Q Consensus 683 I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~g~~ll~s~s~Dg----~V~iWD~~~ 755 (847)
+.+++|+| +|++|++++.|+.++||+++..+..+..+..|...|.+ ++|+|+++.++++++.++ .|..||+.+
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 46889999 99999999999999999987436677888888888877 899999998887777766 677778877
Q ss_pred CceEEEEeeCCceEEEEEecCCC-EEEEE-cCC---CcEEEEcCCc
Q 003106 756 GSCTRVFKVESFCCWCVNAMNRP-CLWDK-LDA---GDIQISDSLF 796 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~~---g~i~i~d~~~ 796 (847)
++ +..+. +...+.++.+..+. .++.. ... +.+.+|+...
T Consensus 392 ~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 392 GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 76 33333 33445666665433 33333 322 4588888543
No 154
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.55 E-value=6.4e-12 Score=137.01 Aligned_cols=265 Identities=10% Similarity=0.047 Sum_probs=177.0
Q ss_pred CCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEE
Q 003106 554 TSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~ 633 (847)
.....++++++|+.++++..++.|++.+......+... ......++.|.+||..++.. +..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~d~~~g~~---~~~ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQR----------------GLGPIEEDTILVIDPNNAEI---LQS 84 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCG----------------GGCSCCSCCEEEECTTTCCE---EEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeeccc----------------ccccccCCcEEEEECCCCeE---Eec
Confidence 34678999999998888887777776544332211100 00112467899999987732 233
Q ss_pred ee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEE---------ccCCCCeEEEEEcC-CCCEEEEEe-C
Q 003106 634 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNL---------EEHSSLITDVRFSP-SMPRLATSS-F 700 (847)
Q Consensus 634 l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l---------~~h~~~I~~v~fsp-~~~~Lasgs-~ 700 (847)
+. ++...+.+|+|+++|+++++...++.|++||.+... .+..+ ..+-....+|+|+| ++.++++.+ .
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 32 455689999999999999988889999999986442 55555 24445789999999 777777776 6
Q ss_pred CCcEEEEECCCCCceEEEeccC----------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--CCce
Q 003106 701 DKTVRVWDADNPGYSLRTFMGH----------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--ESFC 768 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h----------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~~~~ 768 (847)
++.|++||.. +..+..+... ...+..|+|+|++..++++...++.|++||..+++.+..+.. ....
T Consensus 165 ~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 165 NSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp CCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred CCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 9999999943 5566666422 234899999999667888888899999999999998888853 3344
Q ss_pred EEEEEecCCCEEEEEc--------CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 769 CWCVNAMNRPCLWDKL--------DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~--------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+..+.+.. ..++... ....|.+|+.... .+...++. ........+.+...+ ++.++++...++.|+
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~--~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKP--VRKHFDMPHDIVASE-DGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECC--SSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcC--CCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence 55665555 3333322 2336777774422 22222111 011122234455545 568889999999999
Q ss_pred EEEcc
Q 003106 841 SFIAG 845 (847)
Q Consensus 841 vW~~g 845 (847)
+|++.
T Consensus 317 ~~~~~ 321 (329)
T 3fvz_A 317 KFTLT 321 (329)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99863
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.55 E-value=9.5e-14 Score=163.56 Aligned_cols=263 Identities=13% Similarity=-0.018 Sum_probs=163.3
Q ss_pred CcceEEEecCCCeEeecC----CCeEEeCCCCchhhcccc---ccccCCCCCceEEeeecCCCCCCCCcEEEEeccC--C
Q 003106 555 SKPLMMFGTDGAGTLTSP----SNQLWDDKDLELRADMDR---LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQ--G 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~----~~~iWD~~~~~~~~~~~~---~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~--~ 625 (847)
.+..++|++||+.++..+ ..+||++++++....... .+....+... .+.+..+. ...+...++|.+.. .
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~-~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDV-SKGAEQHALFKVNTSRP 100 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEEC-STTSCCEEEEEEETTST
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEecc-CCCCcceEEEEEeccCC
Confidence 467899999999987744 348999866554321111 1111112112 22222221 12234456665543 2
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC---
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--- 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D--- 701 (847)
.... .+..+ ..+...+|+|||+. +++.+.++.+.|||+++++.......+. .+++|+|||++|++++.|
T Consensus 101 g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 101 GEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred Cccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 1112 22222 23456788888863 3344444556699999887765554333 899999999999988877
Q ss_pred -CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCCceEEEEE-----
Q 003106 702 -KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVESFCCWCVN----- 773 (847)
Q Consensus 702 -g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~~~v~~~~----- 773 (847)
+.|++||+.+ +. +..+..|...+.+++|+|||+.++ +++.++ .|++||+.++++. .+..+...+..+.
T Consensus 174 ~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 174 RVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred CeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence 7899999987 44 346778889999999999998665 777888 8999999999877 6666554433322
Q ss_pred ---ecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe---EEEEEc
Q 003106 774 ---AMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS---LSSFIA 844 (847)
Q Consensus 774 ---~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~---V~vW~~ 844 (847)
+..+ ..++....++.+.+|+. ...... . ...++.+.+. ++.++++++.+.+ |.+|+.
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~----g~~~~~----~----~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID----GERVEA----P----QGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET----TEEECC----C----SSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE----CCeecc----C----CCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 3333 56677888899999986 111110 0 1122333333 5677888877754 555543
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.55 E-value=4.8e-13 Score=145.23 Aligned_cols=221 Identities=9% Similarity=0.040 Sum_probs=145.5
Q ss_pred EEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEe
Q 003106 560 MFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEA 631 (847)
Q Consensus 560 ~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~ 631 (847)
+++++++.+++... ..+||+.+++....+.. +.......+.+++++ +...++.|.+||+.++ +.+
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~ 78 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNT 78 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEE
Confidence 34555555555432 37899988876544321 110011122233333 2345788999999877 334
Q ss_pred EEeecC------CCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCc---eeEEEccCCCCeEEEEEcC
Q 003106 632 NSVRAS------TSKVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLK---SKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 632 ~~l~~h------~~~V~~l~fspdg~~Lasgs~D------------g~V~vwd~~~~~---~~~~l~~h~~~I~~v~fsp 690 (847)
..+..+ ...+.+++|+|||++|++++.+ +.|.+||+.+++ .+..+. +...|.+++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence 444322 2237889999999999999865 899999998744 334443 344689999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------------------------------------------
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----------------------------------------------- 723 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----------------------------------------------- 723 (847)
+++ |++++ +.|++||+.+ +..+..+..+.
T Consensus 158 dg~-l~~~~--~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TSC-EEEES--SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 999 66654 4499999987 55555543221
Q ss_pred ---------------------CCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEE
Q 003106 724 ---------------------ASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCL 780 (847)
Q Consensus 724 ---------------------~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 780 (847)
..+.+++|+| +++.++ ++ ++.|.+||+++++.+..+..... +.++.+.. ...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 309 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQRKLIKAANLDHT-YYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTTTEEEEEEECSSC-CCEEEECSSSSCE
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECccCeEEEEEcCCCC-ccceEECCCCCEE
Confidence 1355677889 888655 44 78999999999998888765433 44555553 3567
Q ss_pred EEEcCCCcEEEEcCCc
Q 003106 781 WDKLDAGDIQISDSLF 796 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~ 796 (847)
+....++.|.+||...
T Consensus 310 ~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEecCCCeEEEEeccc
Confidence 7777789999999653
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.53 E-value=3.2e-12 Score=140.59 Aligned_cols=223 Identities=9% Similarity=0.010 Sum_probs=143.7
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEE------cc------
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNL------EE------ 678 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l------~~------ 678 (847)
.++.+.+|++... ..++.+..+..+...+..+++ |+++|++++ .++.|.+|++.....+..+ .+
T Consensus 73 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 150 (361)
T 3scy_A 73 DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE 150 (361)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence 4578999998763 256667777767778888888 888887776 5789999999754332211 11
Q ss_pred --CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc------e------EEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 679 --HSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY------S------LRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 679 --h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~------~------~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
+...+.+++|+|++++|++++ .++.|++|+++.... . ......+...+.+++|+|+|+.+++++.
T Consensus 151 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 151 RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123468899999999776665 589999999886332 1 1222334566889999999997776766
Q ss_pred CCCcEEEEECCCCceEE--EEee---CCceEEEEEecCCC-EEEEEcC--CCcEEEEcCCcccce--eeecccccCCCCc
Q 003106 744 GDGEIRYWSINNGSCTR--VFKV---ESFCCWCVNAMNRP-CLWDKLD--AGDIQISDSLFINAN--IFCGLGWYGSDEI 813 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~--~~~~---~~~~v~~~~~~~~~-~l~~~~~--~g~i~i~d~~~~~~~--~~~~~~~~~~~~~ 813 (847)
.++.|++||+.+++... .+.. +......+.+..+. .++.... ++.|.+|+....... ....... ....
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~ 308 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHP 308 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCC
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCC
Confidence 78999999999775432 2222 12334566665443 4555544 478999986422111 1111111 1122
Q ss_pred cccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 814 PAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 814 ~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
. .+.+.+ ++.+|++++ .++.|.+|++
T Consensus 309 ~----~~~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 309 R----NFIITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp C----EEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred c----eEEECC-CCCEEEEEECCCCCEEEEEE
Confidence 2 233334 566666666 7899999765
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=165.70 Aligned_cols=230 Identities=10% Similarity=-0.002 Sum_probs=144.9
Q ss_pred cceEEEecCCCeEeecC------------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSP------------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~------------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vw 620 (847)
...++|||||+.++... ...+||+.+++.... ..+ . .......+++|+ ....++.|++|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l-~----~~~~~~~~SPDG~~la~~~~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NEL-P----RPIQYLCWSPVGSKLAYVYQNNIYLK 135 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCC-C----SSBCCEEECSSTTCEEEEETTEEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eec-C----cccccceECCCCCEEEEEECCeEEEE
Confidence 56889999999887654 337899998876210 011 0 111223345555 22346799999
Q ss_pred eccCCceeeEeEEeecCCCCE-----------------EEEEEcCCCCEEEEEeCCC-----------------------
Q 003106 621 DVSQGFSFKEANSVRASTSKV-----------------ICCHFSSDGKLLATGGHDK----------------------- 660 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V-----------------~~l~fspdg~~Lasgs~Dg----------------------- 660 (847)
|+.++.. ..+ +..++...| .+++|+|||++|++++.|.
T Consensus 136 ~~~~g~~-~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 136 QRPGDPP-FQI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp SSTTSCC-EEC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred eCCCCCc-EEE-ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9988732 211 112333322 4899999999999988652
Q ss_pred -----------cEEEEECCCCcee--------EEEccCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCC
Q 003106 661 -----------KAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWD----ADNPG 713 (847)
Q Consensus 661 -----------~V~vwd~~~~~~~--------~~l~~h~~~I~~v~fsp~~~~Lasgs~D----g~V~iWD----~~~~~ 713 (847)
.|++||+.+++.+ ..+.+|...|.+++|+||++++++.... ..|++|| +.+ +
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g 292 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-W 292 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-E
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-C
Confidence 7889999987653 1234688889999999998777664432 2488899 765 4
Q ss_pred ceEEEe----ccCCCCeE-----EEEEecCCCeEEE-EEeCCC--cEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE
Q 003106 714 YSLRTF----MGHSASVM-----SLDFHPNKDDLIC-SCDGDG--EIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 714 ~~~~~~----~~h~~~V~-----sl~fsp~g~~ll~-s~s~Dg--~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
.+...+ .+|...|. ++.|+|+|+.+++ ++..+| .|.+||+.+++ ...+..+...+..+.+.+...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~ 371 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLF 371 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEE
Confidence 433333 46777776 8999999987665 344555 57777887776 44454444334433222444444
Q ss_pred EEcC-----CCcEEEEcCC
Q 003106 782 DKLD-----AGDIQISDSL 795 (847)
Q Consensus 782 ~~~~-----~g~i~i~d~~ 795 (847)
.... .+.+.+|...
T Consensus 372 ~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEESCGGGCTTCBEEEEEE
T ss_pred EEEecCCCCCceEEEEEEe
Confidence 4433 3667777643
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.50 E-value=3.4e-12 Score=141.17 Aligned_cols=241 Identities=11% Similarity=0.043 Sum_probs=147.6
Q ss_pred CcceEEEecCCCeEeecC--CCeEEeCC-CCchhhcccc----ccccCCCCCceE--EeeecC-C----CCC----CCCc
Q 003106 555 SKPLMMFGTDGAGTLTSP--SNQLWDDK-DLELRADMDR----LVEDGSLDDNVE--SFLSHD-D----TDP----RDAG 616 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~--~~~iWD~~-~~~~~~~~~~----~~~~g~~d~~v~--~~~s~d-~----t~~----~d~~ 616 (847)
....++|+|||+++++.+ ...+||+. ++++...... ......++..-. .++..+ + .+. .++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 456789999999876655 34789987 6654321110 001111111111 111111 0 000 5788
Q ss_pred EEEEeccC-CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCcee--EEEc--cCCCCeEEEEE
Q 003106 617 GRGMDVSQ-GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTD-TLKSK--TNLE--EHSSLITDVRF 688 (847)
Q Consensus 617 v~vwd~~~-~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~-~~~~~--~~l~--~h~~~I~~v~f 688 (847)
+++|++.. +.....+..+. .+...+.+++|+|||++|++++. ++.|++||++ +++.. ..+. .|...+..++|
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence 99999974 42222222222 35678999999999999888764 6799999998 67653 2333 24567999999
Q ss_pred cCCCCEEEEEeC-CCcEEEEECCC-CCceE---EEec-------cCCC------CeEEEE-EecCCCeEEEEEeCCC---
Q 003106 689 SPSMPRLATSSF-DKTVRVWDADN-PGYSL---RTFM-------GHSA------SVMSLD-FHPNKDDLICSCDGDG--- 746 (847)
Q Consensus 689 sp~~~~Lasgs~-Dg~V~iWD~~~-~~~~~---~~~~-------~h~~------~V~sl~-fsp~g~~ll~s~s~Dg--- 746 (847)
+|+|++|++++. +++|.+|+++. .+... ..+. +|.. .+..++ |+|+|++++++...++
T Consensus 201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~ 280 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL 280 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence 999999988774 78999998763 13322 1221 2222 588999 9999997765554333
Q ss_pred --cEEEEECC-CCceEEE---EeeCCceEEEEEec----CCCEEEEEcC-CCcEEEEcCC
Q 003106 747 --EIRYWSIN-NGSCTRV---FKVESFCCWCVNAM----NRPCLWDKLD-AGDIQISDSL 795 (847)
Q Consensus 747 --~V~iWD~~-~~~~~~~---~~~~~~~v~~~~~~----~~~~l~~~~~-~g~i~i~d~~ 795 (847)
.|++||+. +++.... +..+...+..+.+. +...++.... ++.|.+|+..
T Consensus 281 ~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 89999996 5665432 22222222223332 3556776665 4889999754
No 160
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.48 E-value=8.8e-13 Score=166.44 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=160.8
Q ss_pred cceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccC--------CCC-CceEEeee-cCC---CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDG--------SLD-DNVESFLS-HDD---TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g--------~~d-~~v~~~~s-~d~---t~~~d~~v~vw 620 (847)
....+|+|||+.++..... .+||+....+. .+. ... ... ....+.++ +|+ ....++.+.+|
T Consensus 247 ~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~---~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~ 322 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIE---IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQ 322 (1045)
T ss_dssp SCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECC---CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEE
T ss_pred cceeeEcCCCCEEEEEeCCEEEEecCCceEee-eec---cCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEE
Confidence 4567999999988776544 56776333221 111 100 000 11223344 454 11226789999
Q ss_pred eccCCceeeEeEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 621 DVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAV-LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~-~V~~l~fspdg~~Lasgs~Dg~V~-vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
++.++. ...+..|.. .+.+++|+ ||+.|++++.+..|. +||+.+++.. .+..|...+.+++|+|||++|+++
T Consensus 323 ~~~~~~----~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 323 DVSGTY----VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp CTTSSB----EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEE
T ss_pred cCCCCc----eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEE
Confidence 988762 234567777 89999999 999999999988898 9999877654 444788899999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC---------CcEEEEECCCCceEEEEeeCCceE
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---------GEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D---------g~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+.|+.|++||+.+ +.....+.+|...|.+++|+|+|+++++++..+ +.|++||+.+++ +..+..+...+
T Consensus 397 ~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 397 NDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp ETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred CCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 9999999999998 666677778999999999999999766444322 489999999887 66666676666
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEc
Q 003106 770 WCVNAMNR-PCLWDKLDAGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~-~~l~~~~~~g~i~i~d 793 (847)
.++.+..+ ..++..+..+...+|+
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCceEcCCCCEEEEEecccCCcCcc
Confidence 66666543 4566666655555554
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=167.32 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=129.8
Q ss_pred ceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCCC----C---------CCCCcEEEEe
Q 003106 557 PLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT----D---------PRDAGGRGMD 621 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t----~---------~~d~~v~vwd 621 (847)
..+.|+|||++++.+. ...+||+.+++....+...... . .......+++|+. + ..++.+++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK-S-VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH-T-TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc-c-cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 4678999997665543 3488999988764432211000 0 0012223444441 1 2368999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCe-----------------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLI----------------- 683 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I----------------- 683 (847)
+.++.... ...+ ...|.+++|+|||++||++. |+.|++||+.+++..... .++...|
T Consensus 97 ~~~g~~~~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 97 LSNGEFVR-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTTEECC-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCCcccc-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 99873210 0112 25688999999999999986 789999999887765432 2333323
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCCceE---E-----Eecc
Q 003106 684 TDVRFSPSMPRLATSSFDK----------------------------------TVRVWDADNPGYSL---R-----TFMG 721 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg----------------------------------~V~iWD~~~~~~~~---~-----~~~~ 721 (847)
.+++|+|||++|++++.|. +|++||+.+ +..+ . .+.+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHT
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCC
Confidence 4899999999999887652 789999987 4332 1 2346
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCC----CcEEEEE----CCCCceEEEE
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGD----GEIRYWS----INNGSCTRVF 762 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~D----g~V~iWD----~~~~~~~~~~ 762 (847)
|...+.+++|+||+. ++++.... ..|.+|| +.++++...+
T Consensus 251 ~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 251 SDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 888899999999964 66554322 2488999 8888766555
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.47 E-value=2.7e-13 Score=159.64 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=125.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
.++.+.+||+.++ ..+.+. .+.. .+++|+|||++|++++.| +.|++||+++++.. .+..|...+.+++|
T Consensus 130 ~~~~~~l~d~~~g-~~~~l~---~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 130 TEDRVALYALDGG-GLRELA---RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI 202 (582)
T ss_dssp CSSCEEEEEEETT-EEEEEE---EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEE
T ss_pred CCCCceEEEccCC-cEEEee---cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceE
Confidence 3445559999887 222222 2222 789999999999988877 78999999988764 67788899999999
Q ss_pred cCCCCEEEEEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEE--------EecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 689 SPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLD--------FHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 689 sp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~--------fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
+|||+.|+++..|+ .|++||+.+ +... .+.+|...|..++ |+||| .++++++.|++++||++ +++
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe
Confidence 99999999888888 899999997 5555 7778887777777 99999 68889999999999999 665
Q ss_pred EEEEeeCCceEEEEEecCCCEEEEEcCCC---cEEEEcC
Q 003106 759 TRVFKVESFCCWCVNAMNRPCLWDKLDAG---DIQISDS 794 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~~~l~~~~~~g---~i~i~d~ 794 (847)
+. .....+.++.+.+...++....+. .+.+++.
T Consensus 278 ~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 278 VE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 54 233456666655444444444443 3555553
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.46 E-value=8.7e-12 Score=137.85 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=139.2
Q ss_pred cEEEEecc-CCceeeEeEEeecCCCCEEEEEEcCCCCE--EEEEe-------------CCCcEEEEECC-CCceeEEEc-
Q 003106 616 GGRGMDVS-QGFSFKEANSVRASTSKVICCHFSSDGKL--LATGG-------------HDKKAVLWHTD-TLKSKTNLE- 677 (847)
Q Consensus 616 ~v~vwd~~-~~~~~~~~~~l~~h~~~V~~l~fspdg~~--Lasgs-------------~Dg~V~vwd~~-~~~~~~~l~- 677 (847)
.+.+||+. ++ .+..+.....+ +.+.+++|+|||++ |++++ .+++|++|+++ +++....+.
T Consensus 61 ~v~~~~~~~~g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~ 138 (365)
T 1jof_A 61 KWSSFAVKSPT-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN 138 (365)
T ss_dssp EEEEEEEEETT-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE
T ss_pred eEEEEEECCCC-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee
Confidence 79999987 66 33322222222 23667999999994 55553 68999999997 466554443
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCCce--EEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 678 ---EHSSLITDVRFSPSMPRLATSSF-DKTVRVWDAD-NPGYS--LRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 678 ---~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~-~~~~~--~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
.+...+.+++|+|+|++|++++. ++.|++||++ + +.. +..+. .|...+..++|+|+|+++++++..++.|
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC-CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 25567999999999998887764 6899999998 5 433 22333 2456799999999999777666668899
Q ss_pred EEEECC--CCceEE---EEeeC-------Cc------eEEEEE-ecCCC-EEEEEcCC-C-----cEEEEcCCcccceee
Q 003106 749 RYWSIN--NGSCTR---VFKVE-------SF------CCWCVN-AMNRP-CLWDKLDA-G-----DIQISDSLFINANIF 802 (847)
Q Consensus 749 ~iWD~~--~~~~~~---~~~~~-------~~------~v~~~~-~~~~~-~l~~~~~~-g-----~i~i~d~~~~~~~~~ 802 (847)
.+|++. +++... .+... .. .+..+. +..+. .++....+ . .|.+|+... ...+.
T Consensus 218 ~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~ 296 (365)
T 1jof_A 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIE 296 (365)
T ss_dssp EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEE
T ss_pred EEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEE
Confidence 999875 565432 22211 11 466666 65443 55554432 2 799998542 11111
Q ss_pred e--cccccCCCCccccccccccccC--CCcEEEEEeC-CCeEEEEEcc
Q 003106 803 C--GLGWYGSDEIPAPSWKVSCRSC--RECCLYTGCG-DSSLSSFIAG 845 (847)
Q Consensus 803 ~--~~~~~~~~~~~~~~w~~~~~~~--~~~~l~sGs~-DG~V~vW~~g 845 (847)
. ............ +.+.+. ++.+|++++. ++.|+||++.
T Consensus 297 ~~~~~~~~~~~~~~~----~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 297 KQLFLSPTPTSGGHS----NAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEEEECSSCCTTC----CCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EeeeeeecCCCCccc----ceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 1 000001111122 222232 5778888876 4999999874
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.44 E-value=8.5e-12 Score=138.09 Aligned_cols=191 Identities=16% Similarity=0.060 Sum_probs=124.5
Q ss_pred EEEecCCCeEeecCC-C-----eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 559 MMFGTDGAGTLTSPS-N-----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 559 v~~s~dG~~~~~~~~-~-----~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
.+|+|||++++.... + .+||+.+++....... .........+++|+ ....+..+.+||+.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-- 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-- 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 579999998877554 2 4568777765432211 11111112334444 22345689999999872
Q ss_pred eEeEEeecCCCCEEEEE--EcCCCCEEEEE----------------------eCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 629 KEANSVRASTSKVICCH--FSSDGKLLATG----------------------GHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~--fspdg~~Lasg----------------------s~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
....+..+...+.... +++|+++|+.. +.+..|++||+.+++.. .+..+...+.
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~ 191 (388)
T 3pe7_A 114 -ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLG 191 (388)
T ss_dssp -EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEE
T ss_pred -ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCcccc
Confidence 3333445555554444 48999998753 24468999999988654 4446677899
Q ss_pred EEEEcC-CCCEEEEEeCC------CcEEEEECCCCCceEEEeccCC--CCeEEEEEecCCCeEEEEEeCCC----cEEEE
Q 003106 685 DVRFSP-SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDG----EIRYW 751 (847)
Q Consensus 685 ~v~fsp-~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~h~--~~V~sl~fsp~g~~ll~s~s~Dg----~V~iW 751 (847)
.++|+| +++.|+.+..+ ..|.+||+.. + ....+..+. ..+..++|+|+|+.+++.+..++ .|++|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 999999 99988877753 3688888765 3 344454444 35788999999997765554332 39999
Q ss_pred ECCCCceEE
Q 003106 752 SINNGSCTR 760 (847)
Q Consensus 752 D~~~~~~~~ 760 (847)
|+.+++...
T Consensus 270 d~~~g~~~~ 278 (388)
T 3pe7_A 270 DPETLENRQ 278 (388)
T ss_dssp CTTTCCEEE
T ss_pred ecCCCceEE
Confidence 999987543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.39 E-value=1.3e-10 Score=123.07 Aligned_cols=231 Identities=9% Similarity=0.128 Sum_probs=153.6
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccc-cCCCCCceEEee-ecCC----CCC-CCCcEEEEeccC
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVE-DGSLDDNVESFL-SHDD----TDP-RDAGGRGMDVSQ 624 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~-~g~~d~~v~~~~-s~d~----t~~-~d~~v~vwd~~~ 624 (847)
....++++++|...+++. ...+||.. +.....+..... .+.+.....+.+ ..++ ++. .++.|.+||. +
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C
Confidence 346778899998766643 23678876 333222211000 011111111122 1222 121 2678999994 3
Q ss_pred CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 625 GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 625 ~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+ +.+..+. .+...+.+|+++++|+++++...++.|++||.+ ++.+..+. .+...+.+|+|+++++.+++...+
T Consensus 109 g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 109 G---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp S---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred C---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4 2333332 345679999999999988888888999999965 56666654 345678999999999877777789
Q ss_pred CcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCC-cEEEEECCCCceEEEEeeCCc--eEEEEEecC
Q 003106 702 KTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDG-EIRYWSINNGSCTRVFKVESF--CCWCVNAMN 776 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~~~~~~~~~~~~~~--~v~~~~~~~ 776 (847)
+.|++||.. +..+..+..+ ...+.+|+++++|. ++++...++ .|++||. +++.+..+..+.. .+..+.+..
T Consensus 185 ~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 999999985 3556666433 36789999999985 666777675 9999995 4667777765433 366777777
Q ss_pred CCEEEEEcCCCcEEEEcCC
Q 003106 777 RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~ 795 (847)
...+|....++.|.+|+..
T Consensus 261 ~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp TTEEEEEETTTEEEEEECS
T ss_pred CCcEEEECCCCeEEEEEcc
Confidence 7778877778889999743
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.37 E-value=1.5e-10 Score=122.64 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=145.5
Q ss_pred CCCcEEEEeccCCceeeEeEEe---ecCCCCEEEEEEc-CCCCEEEEEeC-CCcEEEEECCCCceeEEEc-cCCCCeEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSV---RASTSKVICCHFS-SDGKLLATGGH-DKKAVLWHTDTLKSKTNLE-EHSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l---~~h~~~V~~l~fs-pdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v 686 (847)
.++.|.+||.... ....+... .+|...+.++++. ++++++++... ++.|++|| .+++.+..+. .+...+.+|
T Consensus 49 ~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 49 NNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGV 126 (286)
T ss_dssp GGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEE
T ss_pred CCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEE
Confidence 4567888987633 22221110 2345678999994 67766666643 88999999 5577776664 344678999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+++++++.+++...++.|++||.. +..+..+. ++...+.+|+|+++|. ++++...++.|++||.. ++.+..+..
T Consensus 127 ~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~ 202 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG 202 (286)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred EEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence 999999877777788999999975 34555553 4556789999999976 67677778999999974 566666654
Q ss_pred CC--ceEEEEEecCCCEEEEEcC-CC-cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 765 ES--FCCWCVNAMNRPCLWDKLD-AG-DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 765 ~~--~~v~~~~~~~~~~l~~~~~-~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
.. ..+..+.++....+|.... ++ .|.+|+.... .+........ ....+.+...+ ++.++++ +.|+.|+
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~---~~~~~~~~~~---~~~~~~i~~~~-~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ---LISALESKVK---HAQCFDVALMD-DGSVVLA-SKDYRLY 274 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---EEEEEEESSC---CSCEEEEEEET-TTEEEEE-ETTTEEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---EEEEEcccCC---CCcceeEEECC-CCcEEEE-CCCCeEE
Confidence 42 4567777776667776654 43 8999985422 1211111111 11123344444 4566666 6799999
Q ss_pred EEEcc
Q 003106 841 SFIAG 845 (847)
Q Consensus 841 vW~~g 845 (847)
+|+..
T Consensus 275 v~~~~ 279 (286)
T 1q7f_A 275 IYRYV 279 (286)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99874
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.37 E-value=3.4e-11 Score=143.74 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=112.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CceeEEEc-cCCCCeEEEEEcCCCCEEEEEe
Q 003106 637 STSKVICCHFSSDGKLLATGGHD----------KKAVLWHTDT------LKSKTNLE-EHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~D----------g~V~vwd~~~------~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs 699 (847)
|...+.+++|+|||++|++++.| ..|++||+++ ++. ..+. .+...+.+++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence 67789999999999999999877 5899999987 444 4555 6667889999999999998877
Q ss_pred CC--------CcEEEEECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCC
Q 003106 700 FD--------KTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 700 ~D--------g~V~iWD~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~ 766 (847)
.+ ..|++||+...+ .......+|...+..++|+|||+ ++++++.|+ .|.+||+.+++....+..+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence 55 379999998324 34444455678899999999998 777888888 66666776776554443332
Q ss_pred ce--------EEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 767 FC--------CWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 767 ~~--------v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.. +.++.+. +...++.... +.+.+|.
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 21 2334443 4456666666 7777774
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.37 E-value=1.4e-11 Score=149.72 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=128.4
Q ss_pred cceEEEecCCCeEeec-CCCeEEeCCCCchhhccccccccCCCCCce-EEeeecCCC-------------CCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDDT-------------DPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~-~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~t-------------~~~d~~v~vw 620 (847)
...+.|++||.+++.+ +...+||+.+++....+...... .+.... ...+++|+. -...+.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTT-TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhh-hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4578999999888765 23388999988754322211000 000000 012344431 1112567799
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCe----------------
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLI---------------- 683 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I---------------- 683 (847)
|+.++. ...+..|.+.+..++|||||+.||.+. |+.|++||+.+++.... ..++...|
T Consensus 98 d~~~~~----~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 98 DLNKRQ----LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp ETTTTE----ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred ECCCCc----EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 999872 334667888999999999999999985 68999999988775432 22333323
Q ss_pred -EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---CCc-eEEEec--
Q 003106 684 -TDVRFSPSMPRLATSSFDK------------------------------------TVRVWDADN---PGY-SLRTFM-- 720 (847)
Q Consensus 684 -~~v~fsp~~~~Lasgs~Dg------------------------------------~V~iWD~~~---~~~-~~~~~~-- 720 (847)
..+.|||||++||.++.|. +|+|||+.+ ... ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999998876332 478888876 421 233333
Q ss_pred ----cCCCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCc
Q 003106 721 ----GHSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGS 757 (847)
Q Consensus 721 ----~h~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~ 757 (847)
+|...|..++|+|||+.+++.... +..|++||+.+++
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 377889999999998855433332 2479999999987
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.35 E-value=6.2e-11 Score=141.46 Aligned_cols=161 Identities=9% Similarity=-0.039 Sum_probs=112.9
Q ss_pred CcEEEEeccC------CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECC-CC---ceeEE
Q 003106 615 AGGRGMDVSQ------GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDK--------KAVLWHTD-TL---KSKTN 675 (847)
Q Consensus 615 ~~v~vwd~~~------~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg--------~V~vwd~~-~~---~~~~~ 675 (847)
..|.+||+.+ + . ...+. .+...+.+++|+|||++|+.++.++ .|++||++ ++ +....
T Consensus 161 ~~i~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRS-A---VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEETTSTTTTCGG-G---SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEEECCCCccccCC-c---eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 5788999987 4 2 23444 5667888999999999999887553 79999999 56 44444
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEeccCCCC--------eEEEEEecCCCeEEEEEeCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSAS--------VMSLDFHPNKDDLICSCDGD 745 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~--------V~sl~fsp~g~~ll~s~s~D 745 (847)
..+|...+.+++|+|||+++++++.|+ .|.+||+.+ +........+... +.+++|++++. ++++++.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~- 313 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK- 313 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-
Confidence 455678899999999999778888888 566666654 4433333333222 56788998876 6668887
Q ss_pred CcEEEE--ECCCCceEEEEeeCCceEEEE-EecCCCEEEEE
Q 003106 746 GEIRYW--SINNGSCTRVFKVESFCCWCV-NAMNRPCLWDK 783 (847)
Q Consensus 746 g~V~iW--D~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~ 783 (847)
+.++|| |+.+++ +..+..+...+..+ ..+....++..
T Consensus 314 ~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~ 353 (662)
T 3azo_A 314 GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVA 353 (662)
T ss_dssp SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEE
T ss_pred CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEE
Confidence 999999 655555 66777666666666 55555444443
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=3.6e-10 Score=123.15 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=146.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-----CCeEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-----SLITDVR 687 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-----~~I~~v~ 687 (847)
.++.|.+||..++ +.+.++. .......++|+++++++++...++.|.+||..+++.+..+.... .....|+
T Consensus 62 ~~~~v~viD~~t~---~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~ 137 (328)
T 3dsm_A 62 NSHVIFAIDINTF---KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV 137 (328)
T ss_dssp GGTEEEEEETTTC---CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE
T ss_pred CCCEEEEEECccc---EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE
Confidence 4678999999977 3444443 34678999999998555554489999999999999887776433 1456777
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC----------CcEEEEECCC
Q 003106 688 FSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN 755 (847)
Q Consensus 688 fsp~~~~Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D----------g~V~iWD~~~ 755 (847)
+ ++..|+.++ .+++|.+||+.+ +..+.++.. ......++++++|+ +++++..+ +.|.+||.++
T Consensus 138 ~--~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 138 Q--YGKYVYVNCWSYQNRILKIDTET-DKVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET 212 (328)
T ss_dssp E--ETTEEEEEECTTCCEEEEEETTT-TEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred E--ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC
Confidence 7 455665555 489999999998 666666653 33467899999987 55565544 7899999999
Q ss_pred CceEEEEeeC-CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE
Q 003106 756 GSCTRVFKVE-SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 756 ~~~~~~~~~~-~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG 833 (847)
++.+..+... ......++++. ...+|.... .|.++|...... . ........ ....+.+...+.++.++++.
T Consensus 213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~--~-~~~~~~~~--~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV--P-VRPFLEFR--DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC--C-SSCSBCCC--SSCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce--e-eeeeecCC--CCceEEEEEcCCCCeEEEEc
Confidence 9888777653 23566777764 566776654 788888543221 1 11111100 12344555555566777777
Q ss_pred ----eCCCeEEEEEc
Q 003106 834 ----CGDSSLSSFIA 844 (847)
Q Consensus 834 ----s~DG~V~vW~~ 844 (847)
..++.|.+|+.
T Consensus 286 ~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSP 300 (328)
T ss_dssp CTTSSSEEEEEEECT
T ss_pred ccccccCCEEEEECC
Confidence 67899999986
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.30 E-value=3.1e-10 Score=137.04 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=119.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCcee--EEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK----------------AVLWHTDTLKSK--TNL 676 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~----------------V~vwd~~~~~~~--~~l 676 (847)
..|++||+.++.... . ++.. ..+.+++|+|||+.|+.++.|+. |++|++.++... ..+
T Consensus 151 ~~i~v~d~~tg~~~~-~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 151 VTIKFMKVDGAKELP-D-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEEETTTTEEEE-E-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEEECCCCCCCc-c-cccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 367888888773222 1 2221 22678999999999999988876 999999887632 223
Q ss_pred c--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------CCceEEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 677 E--EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 677 ~--~h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
. .|...+.++.|+|||++|+.++. +..|++||+.+ +...+..+..+...+.. .|+++|+.+++.+.
T Consensus 227 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence 3 35566889999999999887764 56899999975 33245666667666655 48899988776665
Q ss_pred CC---CcEEEEECCCCc--eEEEEeeCCc--eEEEEEec-CCCEEEEEcCCCc--EEEEcC
Q 003106 744 GD---GEIRYWSINNGS--CTRVFKVESF--CCWCVNAM-NRPCLWDKLDAGD--IQISDS 794 (847)
Q Consensus 744 ~D---g~V~iWD~~~~~--~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~~g~--i~i~d~ 794 (847)
.+ +.|.+||+.++. ....+..+.. .+..+.+. +...++....++. |.+|+.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 44 379999998874 2344444433 56666655 5556667777775 444553
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.27 E-value=1.2e-10 Score=128.78 Aligned_cols=195 Identities=10% Similarity=0.013 Sum_probs=119.2
Q ss_pred ceEEEecCCCeEeecCC----C--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCc
Q 003106 557 PLMMFGTDGAGTLTSPS----N--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~----~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
..++|+|||+.++.... . .+||+.+++...... +........++++|+ ....++.+.+||+.++.
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 44578999998765422 2 456877765432111 000000102223333 12234479999998772
Q ss_pred eeeEeEEeecCCCCEEE-------------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEccCCCC
Q 003106 627 SFKEANSVRASTSKVIC-------------------CHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~-------------------l~fspdg~~Lasg-----s~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
.+. .+..+.....+ ++|+||++.++.+ ..+..|++||+.+++..... .+...
T Consensus 114 -~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 114 -EQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp -EEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred -cEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 222 22333333333 4567788776654 35678999999988765544 56778
Q ss_pred eEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCC----CcEE
Q 003106 683 ITDVRFSP-SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGD----GEIR 749 (847)
Q Consensus 683 I~~v~fsp-~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~D----g~V~ 749 (847)
+..+.|+| +++.|+.++.+ ..|.+||+.. +. +..+..+ ...+..++|+|+|+.+++++..+ +.|+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 99999999 78877766543 4688888875 33 3333333 23578899999998776554332 3499
Q ss_pred EEECCCCceEEEE
Q 003106 750 YWSINNGSCTRVF 762 (847)
Q Consensus 750 iWD~~~~~~~~~~ 762 (847)
+||+.+++.....
T Consensus 268 ~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 268 KANPETLENEEVM 280 (396)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEECCCCCeEEee
Confidence 9999988755443
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.26 E-value=2.9e-10 Score=123.74 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=124.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g--~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+..+.+||+.++. .+. + ..+.+++|+|||++|+.++.+ + .|.+||+.+++.......+ . |.+++|
T Consensus 42 ~~~l~~~d~~~~~-~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNA-RRF---I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCC-EEE---E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCc-eEE---c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence 4567788888762 222 2 468899999999999988754 3 3888898887765554433 3 999999
Q ss_pred cCCCCEEEEEeCC---------------------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 689 SPSMPRLATSSFD---------------------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 689 sp~~~~Lasgs~D---------------------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+|+++.|+.++.+ ..|++||+.+ +..+..+.. . .+..++|+|+| ++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEE
Confidence 9999998887632 5699999987 554344444 3 78899999998 5556
Q ss_pred EeCCC-------cEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCC-------CcEEEEcCCcccceeeecccc
Q 003106 742 CDGDG-------EIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDA-------GDIQISDSLFINANIFCGLGW 807 (847)
Q Consensus 742 ~s~Dg-------~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~-------g~i~i~d~~~~~~~~~~~~~~ 807 (847)
+..++ ...||.+.+++... +..+ ..+..+..++...++..... ..|.+|+ . .. ......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~--~~~l~~- 259 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEK-MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-G-KE--VMGILD- 259 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEE-EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-S-SC--EEESST-
T ss_pred EecccccccccccccEEEeCCCceEE-eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC-C-Cc--eEeccc-
Confidence 65442 34555444555433 3333 44444543444444444332 3577776 1 11 111110
Q ss_pred cCCCCccc-cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 YGSDEIPA-PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 ~~~~~~~~-~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.....+.. ..|+ ++ ++++++.|+.++|| +
T Consensus 260 ~~~~~~~~~~~~s------dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 260 EVDRGVGQAKIKD------GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp TCCSEEEEEEEET------TE-EEEEEEETTEEEEE-E
T ss_pred cCCcccCCccEEc------Cc-EEEEEecCCcEEEE-E
Confidence 01111111 2232 34 88899999999999 6
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.26 E-value=1.2e-10 Score=141.28 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCC-----EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSK-----VICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h 679 (847)
|+.|++||+.++. +...+.+|... ..+++|||||++|+.++.+ +.+.|||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGN---SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI 110 (740)
T ss_dssp TTEEEEEETTTCC---EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred CCcEEEEECCCCc---eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence 7899999999883 34446666533 2458899999999999876 55679999988765 46677
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----------------EEEEEecCCCeEEEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSC 742 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----------------~sl~fsp~g~~ll~s~ 742 (847)
...+..++|||||+.||.+. |+.|++||+.+......+..++...+ .++.|+|||+.|++..
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88899999999999998885 78999999987332222233333323 3589999999766443
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=3.2e-10 Score=120.95 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=139.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fs 689 (847)
++.|.+||..++ ...+..+...+.+++|+++|+++++...++.|.+||..+++....+... ...+.+++++
T Consensus 49 ~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 123 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA 123 (296)
T ss_dssp GTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC
T ss_pred CCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC
Confidence 456778887754 2344557788999999999998888777889999999887765443322 2346789999
Q ss_pred CCCCEEEEEeC-----------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 690 PSMPRLATSSF-----------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 690 p~~~~Lasgs~-----------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
++|+++++.+. .+.|..||.. + .+..+..+...+..++|+|+++.+ ++.+.++.|.+||
T Consensus 124 ~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~ 199 (296)
T 3e5z_A 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYC 199 (296)
T ss_dssp TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEE
T ss_pred CCCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEE
Confidence 99998887321 2345555443 2 344555667778999999999876 7888889999999
Q ss_pred CC-CCce---EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 753 IN-NGSC---TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 753 ~~-~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+. +++. ...+......+..+.++....+|.+. ++.|.+|+... ..+...... .. ... +.+...++.
T Consensus 200 ~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g---~~~~~~~~~-~~-~~~----~~f~~~d~~ 269 (296)
T 3e5z_A 200 LNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG---DELGRVLTP-QT-TSN----LCFGGPEGR 269 (296)
T ss_dssp ECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS---CEEEEEECS-SC-CCE----EEEESTTSC
T ss_pred ECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC---CEEEEEECC-CC-cee----EEEECCCCC
Confidence 97 5554 33443333445567777777899888 78899998642 122221111 11 222 222233567
Q ss_pred EEEEEeCCCeEEE
Q 003106 829 CLYTGCGDSSLSS 841 (847)
Q Consensus 829 ~l~sGs~DG~V~v 841 (847)
.|++++.++.+++
T Consensus 270 ~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 270 TLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEcCCeEEEE
Confidence 7888888764443
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.25 E-value=1.2e-09 Score=118.18 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=123.5
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEc--cCCCCeEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLE--EHSSLITD 685 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~--~h~~~I~~ 685 (847)
..++.|.+||..++ .+.. .+..+...|.+++|+++|++++++..+ +.|.+||.++++....+. .+...+.+
T Consensus 63 ~~~~~i~~~d~~~~-~~~~--~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 63 VFEGNIFKINPETK-EIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTTCEEEEECTTTC-CEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCCEEEEEeCCCC-cEEE--EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 34678999998876 2222 223466789999999999988887766 689999998777654443 34467999
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-Cce
Q 003106 686 VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC 758 (847)
Q Consensus 686 v~fsp~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~ 758 (847)
++|+|+++++++... .+.|.+||..+ +. +..+..+...+..++|+|+++.++++.+.++.|.+||+++ +..
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 999999987776653 24566666554 23 3333333456889999999987777777788999999974 333
Q ss_pred EEEE-----ee--CCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 759 TRVF-----KV--ESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~-----~~--~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
+..+ .. ....+..+.++....+|.+. .++.|.+|+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 218 IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred cccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 3221 11 11356677777777788776 45789999863
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.25 E-value=2.2e-10 Score=126.72 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=123.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccC--
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH-- 679 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h-- 679 (847)
..|+.|.+||..++ +.+..+..+..+ .++|+|||++|++++. |++|.+||+.+++.+.++...
T Consensus 28 ~~d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 28 LTESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GGGCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred cccCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 34778999998877 345566665554 8999999999999863 678999999999998887643
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 680 ----SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 680 ----~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
......++|+|+|++|+++.. +++|.+||+.+ +..+.+ +. +. ....+.+.|++...+++.+.||.+.+|+
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 345678999999999988874 68999999998 666666 43 22 2344678888766777888999999999
Q ss_pred CCC-CceEEEE------eeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 753 INN-GSCTRVF------KVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 753 ~~~-~~~~~~~------~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+.. ++..... ......+..........+|....++.+.+++..
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred ECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEec
Confidence 976 5544222 111111111111122345555667788888854
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.25 E-value=3.7e-10 Score=122.84 Aligned_cols=201 Identities=8% Similarity=0.078 Sum_probs=123.4
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---------------------------KKAVLWHTD 668 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---------------------------g~V~vwd~~ 668 (847)
.+.+||+.++ ....+ .. +.. |.+++|+|||+.|+.++.+ ..|++||+.
T Consensus 86 ~l~~~~~~~g-~~~~l--~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETL-SSKKI--LE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTT-EEEEE--EE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCC-ceEEE--Ec-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 4677788766 22222 22 223 9999999999999888642 579999999
Q ss_pred CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 669 ~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+++.+..+.. . .+.+++|+|+| +++++..++ ...||.+++ +.. ..+..+ ..+..+ +|+|+.+++.
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~-~~l~~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-GKE-EKMFEK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-TEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC-Cce-EEeccC-cceeeE--CCCCCEEEEE
Confidence 8877455554 3 78999999999 777776542 445555543 443 344344 455544 9999877655
Q ss_pred EeCC-------CcEEEEECCCCceEEEEeeCCceEEE-EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCc
Q 003106 742 CDGD-------GEIRYWSINNGSCTRVFKVESFCCWC-VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEI 813 (847)
Q Consensus 742 ~s~D-------g~V~iWD~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 813 (847)
+..+ ..|.+|| +++....+..+...+.. +.+. +..++.+..++.+.+| .. ......... +...+
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~--~g~~~~~~~--~~~~v 304 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW--DGEIKPIAK--GRHWI 304 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EE--SSSEEEEEC--SSSEE
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-Ec--CCceEEEec--CCCeE
Confidence 5332 4688888 56554444444555654 5555 3377777888888888 54 222211111 11122
Q ss_pred cccccccccccCCCcEEEEEeCCCeE-EEEEc
Q 003106 814 PAPSWKVSCRSCRECCLYTGCGDSSL-SSFIA 844 (847)
Q Consensus 814 ~~~~w~~~~~~~~~~~l~sGs~DG~V-~vW~~ 844 (847)
....|+ + .++++++.++.. .||.+
T Consensus 305 ~~~~~s----~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 305 MGFDVD----E---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEES----S---SEEEEEECSSSCCEEEEE
T ss_pred Eeeeee----C---cEEEEEcCCCChHHheEe
Confidence 222232 3 577777777765 77764
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.23 E-value=3.5e-10 Score=125.04 Aligned_cols=165 Identities=12% Similarity=-0.032 Sum_probs=115.5
Q ss_pred eEeEEeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 629 KEANSVRASTSKVIC-----CHFSSDGKLLATGGH-DKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~-----l~fspdg~~Lasgs~-Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
..+..+..|...+.. .+|+|||++|+.++. ++. |.+||+.+++......++...+.+++|+||++.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 455666677766666 899999999999887 664 888899988887776677666667889999999999999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEE--EecCCCeEEEEE---------------------eCCCcEEEEECCCCc
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGS 757 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~--fsp~g~~ll~s~---------------------s~Dg~V~iWD~~~~~ 757 (847)
++.|++||+.+ +.....+..+...+.... +++++..+++.. ..+..|.+||+.+++
T Consensus 101 ~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 101 GRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 99999999998 565555666666554444 488887554321 234689999999987
Q ss_pred eEEEEeeCCceEEEEEecC-C-CEEEEEcC------CCcEEEEcCC
Q 003106 758 CTRVFKVESFCCWCVNAMN-R-PCLWDKLD------AGDIQISDSL 795 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~------~g~i~i~d~~ 795 (847)
..... .+...+..+.+.. + ..++.... ...|.+++..
T Consensus 180 ~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 180 STVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp EEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred eEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 55444 3444455555554 3 23333332 2256666643
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.23 E-value=4e-10 Score=135.78 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=118.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCc----eeE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-------------AVLWHTDTLK----SKT 674 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------------V~vwd~~~~~----~~~ 674 (847)
..+..|++||+.++.... ...+... ...+++|+|||+.|+.++.|.. |++|++.++. ++.
T Consensus 144 ~~~~~i~v~dl~tg~~~~-~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSK-VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp CSCCEEEEEETTTCCBCS-SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CceEEEEEEECCCCCCcC-CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 345677888887773210 1111111 1267899999999999998876 9999999876 232
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe---CCCc
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDK----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGE 747 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg----~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s---~Dg~ 747 (847)
....|...+.++.|+|||++|+.++.++ .|++||..+ + ....+..+...+....| ++|. +++++. .++.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQR 296 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCE
Confidence 3334556899999999999998877665 677776654 3 34555556666777777 6666 665655 2588
Q ss_pred EEEEECCCCce---EEEEeeC-CceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 748 IRYWSINNGSC---TRVFKVE-SFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 748 V~iWD~~~~~~---~~~~~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
|.+||+.++.. ...+..+ ...+..+.+.+...++....++...+|.
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 99999988753 3344333 4456666666666777888888877765
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.22 E-value=2.1e-09 Score=114.30 Aligned_cols=175 Identities=13% Similarity=-0.012 Sum_probs=131.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRF 688 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~f 688 (847)
+..++.|.+||.+++ +.+.++..+. ..+.+++++|+|++|+ +.++.|++||. +++.+..+..+. ..+.++.+
T Consensus 11 ~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 11 GSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp CTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred eCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 456789999999888 5666776665 5789999999999998 45788999999 799999988653 57899999
Q ss_pred cCCCCEEEEEeC-CCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE
Q 003106 689 SPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 689 sp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~ 761 (847)
.++|++|++.+. ++.|..+|.. ++.+..+.. +...+..+++.++|. ++++...++.|.+||.+ |+.+..
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CCEEEE
Confidence 999999999887 7777777763 566665541 222455677889987 55688889999999998 998888
Q ss_pred EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 762 FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+.............+...++....++.|..++..
T Consensus 161 ~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 161 VKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EECSSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred EECCCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 8765433333333345556666666778888855
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=5e-09 Score=122.66 Aligned_cols=177 Identities=9% Similarity=0.006 Sum_probs=128.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEc-
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS- 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fs- 689 (847)
.++.|.++|..++ +.+.++.. ...+.+++|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+
T Consensus 175 ~~~~V~viD~~t~---~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~ 249 (567)
T 1qks_A 175 DAGQIALIDGSTY---EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSK 249 (567)
T ss_dssp TTTEEEEEETTTC---CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECC
T ss_pred CCCeEEEEECCCC---eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcc
Confidence 4668889999877 44445543 3357799999999999999999999999996 888888887543 46799999
Q ss_pred ---CCCCEEEEEe-CCCcEEEEECCCCCceEEEecc----------------------C---------------------
Q 003106 690 ---PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----------------------H--------------------- 722 (847)
Q Consensus 690 ---p~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~----------------------h--------------------- 722 (847)
|||+++++++ .+++|.|||..+ .+.+.++.. |
T Consensus 250 ~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 250 MEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred ccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 6999887766 469999999887 444443321 0
Q ss_pred ------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCc-----eEEEEEecCCCEEEEEc
Q 003106 723 ------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESF-----CCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 723 ------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~-----~v~~~~~~~~~~l~~~~ 784 (847)
......+.|+|+++++++++..+++|.+||+++++.+..+.. ... .+. +.......+|...
T Consensus 329 ~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~ 407 (567)
T 1qks_A 329 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATS 407 (567)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEE
T ss_pred CCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeC
Confidence 112335679999998888887889999999999998877765 221 222 2223345677654
Q ss_pred --CCCcEEEEcCCc
Q 003106 785 --DAGDIQISDSLF 796 (847)
Q Consensus 785 --~~g~i~i~d~~~ 796 (847)
.++.|.+++...
T Consensus 408 ~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 408 HMGDDSVALIGTDP 421 (567)
T ss_dssp BSSSSEEEEEECCT
T ss_pred CCCCCeEEEecCCC
Confidence 357899998653
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=1.2e-09 Score=114.38 Aligned_cols=197 Identities=7% Similarity=0.008 Sum_probs=132.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
+...+.+|+++++|+++++.. ++.|.+||.+.... ..+. .....+.+|+++++++.+++...++.|.+||..+ ...
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~ 141 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQ 141 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSC
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-cee
Confidence 335678999999999666665 88999999876543 3332 2336789999999998777777789999998765 322
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
..........+.+|+++++|. ++++...++.|.+||................+..+.++....+|... .++.|.+|+.
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 222223334678899999986 66677778899999998776544333333556777777665777665 4678999986
Q ss_pred CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....... ....+. ...+.+...+ ++.++++...++.|++|+..
T Consensus 221 ~~~~~~~---~~~~~~----~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 221 GSTTSTV---LPFTGL----NTPLAVAVDS-DRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp TCSCCEE---CCCCSC----SCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred CCCccee---eccCCC----CCceeEEECC-CCCEEEEECCCCEEEEEcCC
Confidence 4322111 111111 1223333334 46788889999999999863
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.19 E-value=5.4e-10 Score=134.63 Aligned_cols=198 Identities=10% Similarity=-0.034 Sum_probs=124.1
Q ss_pred cCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCceeEEEccCCCCe--EEEEEcCCCCEEEEEeCCCc-----
Q 003106 636 ASTSKVICCHFSSDGKLLA-----TGGHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT----- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~La-----sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I--~~v~fsp~~~~Lasgs~Dg~----- 703 (847)
+|...+.+++|||||++|| .|+.+.+|+|||+++++.+. ..+...+ .+++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666799999999999998 44455789999999988651 1122222 68999999999999998876
Q ss_pred --------EEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCC-C--cEEEEECCCCceEEEEeeCCceE
Q 003106 704 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 704 --------V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g--~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|++|++.++.. .+.....|...+.++.|+|+|++++++...+ + .|++||..+++............
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987432 2333344566889999999999877555433 2 67777766665443333333333
Q ss_pred EEEEecCCCEEEEEc---CCCcEEEEcCCcccc---eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 770 WCVNAMNRPCLWDKL---DAGDIQISDSLFINA---NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~---~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
..+..++. .++... .++.|.+|+...... ..+.. ......+. .+.+. ++.++++...|+..+||.
T Consensus 276 ~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~----~~~~~--~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 276 EVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLL----SVSIV--GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEE----EEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEE----EEEEE--CCEEEEEEEECCEEEEEE
Confidence 33333333 333333 246788888543221 11111 00011111 12222 567899999999999986
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
+
T Consensus 347 ~ 347 (695)
T 2bkl_A 347 A 347 (695)
T ss_dssp E
T ss_pred E
Confidence 5
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=2.7e-09 Score=111.51 Aligned_cols=176 Identities=6% Similarity=-0.050 Sum_probs=121.6
Q ss_pred CCcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
++.|.+||..... .. .+. .....+.+++++++|+++++...++.|.+||..+.............+.+|++++++
T Consensus 86 ~~~i~~~d~~~~~-~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 86 NNRVVTLAAGSNN-QT---VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp TTEEEEECTTCSC-CE---ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred CCEEEEEeCCCce-Ee---eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 6788899877642 11 222 233678999999999988887778999999876554433222333467899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
+.+++...++.|.+||... .........+...+.+|+++++| +++++...++.|.+||............+...+.++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp CEEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CEEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 8777766788999999886 33333333344678999999998 577677778899999997655433222233456677
Q ss_pred EecCCCEEE-EEcCCCcEEEEcCC
Q 003106 773 NAMNRPCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 773 ~~~~~~~l~-~~~~~g~i~i~d~~ 795 (847)
.++....+| +...++.|.+++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCC
T ss_pred EECCCCCEEEEECCCCEEEEEcCC
Confidence 766544455 45567788888754
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.17 E-value=6.3e-09 Score=113.16 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=118.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCC
Q 003106 638 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM 692 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~D------------------------g~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~ 692 (847)
-+.|.+|+|+++|+++++...+ ++|++||.++++.+..+. ++-..+.+|+|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999898877664 444678999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEe---------ccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~---------~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~ 762 (847)
+++++...++.|++||.......+..+ .++...+..|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987522245555 344557899999994445776776 689999999 567777777
Q ss_pred eeCC----------ceEEEEEecCC-CEEE-EEcCCCcEEEEcCC
Q 003106 763 KVES----------FCCWCVNAMNR-PCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 763 ~~~~----------~~v~~~~~~~~-~~l~-~~~~~g~i~i~d~~ 795 (847)
.... .....++++.. ..+| +...++.|.+|+..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 5332 22566776654 4444 55667789999865
No 187
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=2.1e-09 Score=119.27 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
+.. |+.|+| |+++|+++ .++.|++||+.+......+..|...|.++.+.+. .|++++.||.|.+||+.+ +...
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~-~~~~ 159 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KSTK 159 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC-Cccc
Confidence 556 999999 99999999 8899999999987776777788888999888765 388899999999999997 4433
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce--EEEE------e---eCCceEEEEEecCCCEEE
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------K---VESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~l~ 781 (847)
. +...|+|++|+|+| ++.|..||+|++|+...+.+ .+++ . .+...|.++.+.....++
T Consensus 160 ~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp E----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred c----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 2 44689999999998 35788899999999988886 5566 2 256778888877555433
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.17 E-value=9.4e-09 Score=111.19 Aligned_cols=220 Identities=9% Similarity=0.009 Sum_probs=137.7
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
++.++.|. + +....+..+...+.+++|+++|++++++..++.|.+||.++++....+..+...|.+|+|+++++
T Consensus 26 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 26 ESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp GGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC
T ss_pred cccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc
Confidence 44556662 1 34555667778889999999999888888899999999998877655545677899999999998
Q ss_pred EEEEEeCC----CcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCceEEE
Q 003106 694 RLATSSFD----KTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRV 761 (847)
Q Consensus 694 ~Lasgs~D----g~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~------Dg~V~iWD~~~~~~~~~ 761 (847)
++++...+ +.|.+||.++ +.....+. .+...+.+++|+|+|. ++++... ++.|..||..+++....
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTS-CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCC-CEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 77777666 6899999987 44332332 3456799999999986 5545543 24566667665554433
Q ss_pred EeeCCceEEEEEecCCC-EEEEE-cCCCcEEEEcCCcccc--eeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 762 FKVESFCCWCVNAMNRP-CLWDK-LDAGDIQISDSLFINA--NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~-~l~~~-~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
.. ....+..+.+..+. .+|.. ..++.|.+|+...... ..+.......... ......+...+ ++.++++...++
T Consensus 178 ~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~-~G~l~v~~~~~~ 254 (333)
T 2dg1_A 178 IQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDS-DDNLYVAMYGQG 254 (333)
T ss_dssp EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBT-TCCEEEEEETTT
T ss_pred ec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECC-CCCEEEEEcCCC
Confidence 32 22235556655443 45544 4567888888532111 1010000000000 00111122223 466677777788
Q ss_pred eEEEEEc
Q 003106 838 SLSSFIA 844 (847)
Q Consensus 838 ~V~vW~~ 844 (847)
.|.+|+.
T Consensus 255 ~v~~~d~ 261 (333)
T 2dg1_A 255 RVLVFNK 261 (333)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 9999975
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.17 E-value=1.7e-09 Score=130.52 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=125.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc-------
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~------- 703 (847)
+|...+.+++|||||++||.++.++ .|+|||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3545688999999999999876543 89999999998776433222 3678999999999999888766
Q ss_pred ---------EEEEECCCCCce-EEEec--cCCCCeEEEEEecCCCeEEEEEeC----CCcEEEEECCC------Cc-eEE
Q 003106 704 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR 760 (847)
Q Consensus 704 ---------V~iWD~~~~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~----Dg~V~iWD~~~------~~-~~~ 760 (847)
|++|++.+.... ...+. .|...+.++.|+|+|+++++++.. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999874321 23333 355668899999999987766542 56899999986 53 355
Q ss_pred EEeeCCceEEE-EEecCCCEEEEEcCC---CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 761 VFKVESFCCWC-VNAMNRPCLWDKLDA---GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 761 ~~~~~~~~v~~-~~~~~~~~l~~~~~~---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+..+...+.. +..++...++....+ +.|.+|+........+..... +... ..+..+.+. .++.++++...|
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~--~~~~~~~~~-~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEK--DVLEWVACV-RSNFLVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSS--CEEEEEEEE-TTTEEEEEEEET
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCC--CeEEEEEEE-cCCEEEEEEEEC
Confidence 55554443333 333333333333322 357777754321100000000 1110 011122222 246788888889
Q ss_pred CeEEEEE
Q 003106 837 SSLSSFI 843 (847)
Q Consensus 837 G~V~vW~ 843 (847)
+..+||.
T Consensus 357 g~~~l~~ 363 (710)
T 2xdw_A 357 VKNTLQL 363 (710)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 8655553
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.15 E-value=2.7e-09 Score=113.75 Aligned_cols=218 Identities=10% Similarity=0.020 Sum_probs=137.9
Q ss_pred CcceEEEecCCC-eEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGA-GTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~-~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
....++|+++|. .++++. .. ..||..++ . ..+. .. ......+.+..++ +...++.|.+||..++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~---~~--~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g- 100 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM---HP--SHHQNGHCLNKQGHLIACSHGLRRLERQREPGG- 100 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE---SS--CSSEEEEEECTTCCEEEEETTTTEEEEECSTTC-
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE---CC--CCCcceeeECCCCcEEEEecCCCeEEEEcCCCC-
Confidence 345789999998 333332 22 56787765 2 2111 11 0111112233333 2234578999998777
Q ss_pred eeeEeEEe-ec-CCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 627 SFKEANSV-RA-STSKVICCHFSSDGKLLATGGH-----------------DKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 627 ~~~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~-----------------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
.+..+... .+ ....+.+++++++|+++++.+. .+.|..||.+ ++ +..+..+...+..++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLA 178 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEE
Confidence 33322211 11 1245778999999999887321 2345555554 44 344556667789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCce---EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|+|+++.|++.+.++.|++||+...+.. ...+..+...+.+|+|+++|. ++++. ++.|.+||.. ++.+..+..
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 9999998877778899999999732443 333434556678899999987 55455 7899999987 778888877
Q ss_pred CCceEEEEEec--CCCEEEEEcCCC
Q 003106 765 ESFCCWCVNAM--NRPCLWDKLDAG 787 (847)
Q Consensus 765 ~~~~v~~~~~~--~~~~l~~~~~~g 787 (847)
+.. +.++.+. +...+|....++
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCe
Confidence 666 6666653 445788877654
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.15 E-value=7.6e-08 Score=101.55 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=146.0
Q ss_pred CcceEEEecCCCeEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|...++.. .. .+||.. +.+... . ..........+.+..++ +...++.+..||.. + .
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-P---LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G-I 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-E---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-c---CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C-c
Confidence 456788899998776654 23 557766 433211 1 00001111112222222 22335678888875 3 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
++.+ .+......+.++++.++++++++...++.|.+||. +++.... +..+...+.+++++++++.+++...++.|.+
T Consensus 89 ~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 IKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp EEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 2222 22235567999999999998888877889999998 5554332 2334567899999999987777767889999
Q ss_pred EECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEEc
Q 003106 707 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
||. + +..... +..+...+.+|++++++. ++++...++.|.+||. +++.... +......+.++..+....+|.+.
T Consensus 167 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-S-GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-C-CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 999 4 443332 334456789999999977 6656666789999999 6664332 22234567788877666788776
Q ss_pred -CCCcEEEEcC
Q 003106 785 -DAGDIQISDS 794 (847)
Q Consensus 785 -~~g~i~i~d~ 794 (847)
.++.|..|+.
T Consensus 243 ~~~~~i~~~d~ 253 (299)
T 2z2n_A 243 WGANKIGRLTS 253 (299)
T ss_dssp TTTTEEEEEET
T ss_pred cCCceEEEECC
Confidence 5678888886
No 192
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.14 E-value=2e-09 Score=119.07 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=65.3
Q ss_pred EEEcCCCCEEEEEeC-----------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 686 VRFSPSMPRLATSSF-----------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-----------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
++|+|++++++++.. +++|.+||+.+ .+.+.++..+. +.+|+|+|+|++++ +++. ++|.|||++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECC
Confidence 688999888876643 34899999998 77888888776 99999999999665 5554 999999999
Q ss_pred CC--ceEEEEeeCCceEEEEEe
Q 003106 755 NG--SCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 755 ~~--~~~~~~~~~~~~v~~~~~ 774 (847)
++ +.+..+.......+.+.+
T Consensus 334 t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SSSCEEEEEETTSCSSEEEEEE
T ss_pred CCcceeeEEeccCCCCcEEEEe
Confidence 99 888887544444444443
No 193
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=6.1e-10 Score=123.02 Aligned_cols=177 Identities=7% Similarity=-0.012 Sum_probs=113.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE-------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------- 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~------- 685 (847)
+..+.+||+.++. ...+..+... +.++.|+|||++|+.++.++.|++||+.+++....+..+.....+
T Consensus 59 ~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~ 134 (396)
T 3c5m_A 59 NRNYYLLNLETQQ----AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANS 134 (396)
T ss_dssp SCEEEEEETTTTE----EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT
T ss_pred CceEEEEECCCCc----EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEec
Confidence 3467888888762 2223333333 334889999999999999999999999988876666555544333
Q ss_pred ------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec-CCCeEEEEEeCC--
Q 003106 686 ------------VRFSPSMPRLATS-----SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGD-- 745 (847)
Q Consensus 686 ------------v~fsp~~~~Lasg-----s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~D-- 745 (847)
++|+|+++.++.+ ..+..|++||+.+ +...... .+...+..+.|+| ++..++++....
T Consensus 135 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 135 DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp TSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred cCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-CcEEeec-cCCcccccceECCCCCCEEEEEecCCCC
Confidence 4567888876654 4567899999987 4443333 5667899999999 776555444321
Q ss_pred ---CcEEEEECCCCceEEEEeeC-CceEEEEEecCC-C-EEEEEcCC----CcEEEEcCCc
Q 003106 746 ---GEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNR-P-CLWDKLDA----GDIQISDSLF 796 (847)
Q Consensus 746 ---g~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~-~-~l~~~~~~----g~i~i~d~~~ 796 (847)
..|.+||+..++........ ...+..+.+..+ . .++....+ +.|.+|+...
T Consensus 213 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp SCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred CCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 46889998766543333321 234555555533 2 34443322 3388888653
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.08 E-value=5.6e-09 Score=126.70 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=113.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCce--eEEEc-
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK--------------AVLWHTDTLKS--KTNLE- 677 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~--------------V~vwd~~~~~~--~~~l~- 677 (847)
..|++||+.++..... .+ +...+..++|+|| +.|+.++.|+. |++|++.++.. ...+.
T Consensus 189 ~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 189 RTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp EEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 3577888887733221 11 1112357899999 99998887654 89999987652 22333
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeC---CCc
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG---DGE 747 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~---Dg~ 747 (847)
.+...+.++.|+|||++|+..+.++ .|++||+.++. .+...+..+...+.... .++|+.+++.... ++.
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE
Confidence 3334689999999999988777543 89999998731 21455555555565554 4888877755543 346
Q ss_pred EEEEECCCC--ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 748 IRYWSINNG--SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 748 V~iWD~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
|.+||+.++ .....+..+...+..+.+.+...++....++...+|.
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 999999885 3444444444556566666666777777888766664
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.05 E-value=3.2e-08 Score=107.57 Aligned_cols=218 Identities=9% Similarity=-0.037 Sum_probs=142.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.+..++.|.+||..++. + ...+ +.......++++. +++++++...++.|.+||..+++.+.++. .....
T Consensus 12 ~g~~~~~l~~~d~~t~~-~--~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p 86 (328)
T 3dsm_A 12 FQYSNATLSYYDPATCE-V--ENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSP 86 (328)
T ss_dssp TTSCCBEEEEEETTTTE-E--ECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSE
T ss_pred CCCCCceEEEEECCCCE-E--hhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCC
Confidence 45568899999999872 2 2221 1223456788884 45566666668999999999999988885 34668
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCC-----CCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCC
Q 003106 684 TDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNG 756 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~-----~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~ 756 (847)
..|+|++++ .|+++. .++.|.+||..+ ......+.... .....|++ ++.+++++.. .++.|.+||++++
T Consensus 87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEETT-EEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred cEEEEeCCC-eEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence 999999888 555555 899999999998 56665554322 14667777 4556776665 4889999999999
Q ss_pred ceEEEEeeCCceEEEEEecCCCEEEEEcCC-----------CcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 757 SCTRVFKVESFCCWCVNAMNRPCLWDKLDA-----------GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
+.+..+..... ...+.++....+|..... +.|.++|..... +.......... ..+.+...+
T Consensus 163 ~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~----~p~~la~~~- 234 (328)
T 3dsm_A 163 KVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGD----WPSEVQLNG- 234 (328)
T ss_dssp EEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTC----CCEEEEECT-
T ss_pred eEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCC----CceeEEEec-
Confidence 98888765433 344555666677777654 578888865322 11111110011 123333334
Q ss_pred CCcEEEEEeCCCeEEEEEccC
Q 003106 826 RECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~gt 846 (847)
++..|+++.. .|.+||..+
T Consensus 235 d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 235 TRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp TSCEEEEESS--SEEEEETTC
T ss_pred CCCEEEEEcc--EEEEEECCC
Confidence 4566666654 788888754
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.01 E-value=2.1e-07 Score=98.04 Aligned_cols=225 Identities=11% Similarity=0.015 Sum_probs=141.7
Q ss_pred CcceEEEecCCCeEeecC-CCe--EEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SNQ--LWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~~--iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|...++.. ... .||.. +.. .. +...........+.+..++ +...++.+.+||. ++ .
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~ 130 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-K 130 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC-C
Confidence 456778888888766654 333 45544 222 11 1100001111112222222 2233567888887 44 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.. ..+..+...+.++++.++|+++++...++.|.+||. +++.... +..+...+.+++++++++.+++...++.|.+
T Consensus 131 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 131 IRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 222 122335567999999999988888777889999998 6665433 3334566899999999987666667889999
Q ss_pred EECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceEEEEEecCCCEEEEE
Q 003106 707 WDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~ 783 (847)
||. + +.... .+..+...+.+|+++++|. ++++...++.|.+||. ++. +..+. .+...+.++.. ....+|.+
T Consensus 209 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 209 ITT-S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred ECC-C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 999 5 33322 2334557799999999986 6656656789999998 454 33443 33455777777 77788888
Q ss_pred cCCCcEEEEcC
Q 003106 784 LDAGDIQISDS 794 (847)
Q Consensus 784 ~~~g~i~i~d~ 794 (847)
...+.+..++.
T Consensus 283 ~~~~~l~~~~~ 293 (299)
T 2z2n_A 283 MECDKIGKLTL 293 (299)
T ss_dssp ETTTEEEEEEE
T ss_pred ecCCcEEEEEc
Confidence 66666666653
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.99 E-value=8.4e-07 Score=93.48 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=143.2
Q ss_pred CcceEEEecCCCeEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|+..++.. .. .+||.. +++.. +. ..........+....++ +...++.|.++|.. + .
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g-~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE---VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G-G 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE---CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C-C
Confidence 456788889998766653 23 456665 43321 11 00001111111122222 22335678888877 4 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.. ..+......+.++++.++++++++...++.|.+||.+ ++.... +......+.++++.++++.+++...++.|.+
T Consensus 94 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTE-YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEE-ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 221 2223345779999999999988887778899999987 555422 3334567899999999986666666889999
Q ss_pred EECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEEc
Q 003106 707 WDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
||. + +.... ....+...+.+|++++++. ++++...++.|.+||. +++.... +......+.++..+....+|.+.
T Consensus 172 ~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 4 33332 2234456789999999875 6656666778999998 5554332 22334557778777666788776
Q ss_pred C-CCcEEEEcC
Q 003106 785 D-AGDIQISDS 794 (847)
Q Consensus 785 ~-~g~i~i~d~ 794 (847)
. .+.|..++.
T Consensus 248 ~~~~~i~~~~~ 258 (300)
T 2qc5_A 248 WGANQIGRITN 258 (300)
T ss_dssp TTTTEEEEECT
T ss_pred cCCCeEEEECC
Confidence 4 478888886
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.99 E-value=1.6e-08 Score=122.55 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=120.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc--------
Q 003106 637 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------- 703 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~-------- 703 (847)
|...+.+++|||||++||.++.+ ..|+|||+++++.+... .+...+.+++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999887654 46999999998876532 12222367899999 98988877654
Q ss_pred ------EEEEECCCCCc-eEEEec--cCCCCeEEEEEecCCCeEEEEEeC----CCcEEEEECCCC--ceEEEEeeCCce
Q 003106 704 ------VRVWDADNPGY-SLRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKVESFC 768 (847)
Q Consensus 704 ------V~iWD~~~~~~-~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~----Dg~V~iWD~~~~--~~~~~~~~~~~~ 768 (847)
|++|++.+... ....+. .+...+.++.|+|||+++++++.. +..|++||+.++ ++...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999977332 123333 333468899999999977766542 348999999887 424445444332
Q ss_pred -EEEEEecCCCEEEEEcC----CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 769 -CWCVNAMNRPCLWDKLD----AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 769 -v~~~~~~~~~~l~~~~~----~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
...+. .....++..+. .+.|.+|+............. .....+ ..+.+. ++.++++...||..+||.
T Consensus 319 ~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l----~~~~~~--~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 319 QWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNL----ESVGIA--GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp CEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEE----EEEEEE--BTEEEEEEEETTEEEEEE
T ss_pred eEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeE----EEEEEE--CCEEEEEEEECCEEEEEE
Confidence 33333 33344444333 344777775431101111111 111111 111111 467888889999888886
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
+
T Consensus 391 ~ 391 (741)
T 1yr2_A 391 F 391 (741)
T ss_dssp E
T ss_pred E
Confidence 5
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.97 E-value=8.2e-08 Score=102.44 Aligned_cols=218 Identities=9% Similarity=-0.027 Sum_probs=132.3
Q ss_pred CCcEEEEeccCCceeeEeEE--eecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEE-Ecc----CCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANS--VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTN-LEE----HSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~--l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~----h~~~I~~ 685 (847)
++.|.+||..++ .+..+.. ..++...+.+++++++ ++++++. .++.|.+||.+ ++.... ... ....+.+
T Consensus 45 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 121 (314)
T 1pjx_A 45 AGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCND 121 (314)
T ss_dssp CCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCE
T ss_pred CCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcC
Confidence 456777776665 2222111 1124567999999999 6655554 44579999988 665433 221 1245889
Q ss_pred EEEcCCCCEEEEEeCC---------------CcEEEEECCCCCceEEEeccCCCCeEEEEEe----cCCCeEEEEEeCCC
Q 003106 686 VRFSPSMPRLATSSFD---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFH----PNKDDLICSCDGDG 746 (847)
Q Consensus 686 v~fsp~~~~Lasgs~D---------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs----p~g~~ll~s~s~Dg 746 (847)
|+++++++++++...+ +.|..||.. +.. ..+..+......++|+ ++++.++++...++
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~ 198 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence 9999999877766554 456666654 333 2333344557889999 99877776777789
Q ss_pred cEEEEECC-CCce-----EEEEeeCC-ceEEEEEecCCCEEEEEc-CCCcEEEEcCCcccceeeecccccCCCCcccccc
Q 003106 747 EIRYWSIN-NGSC-----TRVFKVES-FCCWCVNAMNRPCLWDKL-DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSW 818 (847)
Q Consensus 747 ~V~iWD~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w 818 (847)
.|.+||++ +++. ...+..+. ..+..+.++....+|.+. .++.|.+|+...... ...... .. ....
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~~~-~~----~~~~ 271 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRC-PF----EKPS 271 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEEC-SS----SCEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEEeC-CC----CCce
Confidence 99999987 4542 22222222 456677777777788775 567899998542111 111111 11 1122
Q ss_pred ccccccCCCc-EEEEEeCCCeEEEEEcc
Q 003106 819 KVSCRSCREC-CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~-~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+ ++. ++++...++.|.+|++.
T Consensus 272 ~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 272 NLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred eEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 333323 456 55556677889999864
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.97 E-value=6.5e-08 Score=102.66 Aligned_cols=177 Identities=11% Similarity=0.058 Sum_probs=123.2
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGK 651 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~ 651 (847)
.+||.++++..-.+..-.. .....++..+++ ....+..|..||. ++ +.+..+..+ ...+.++.+.+||+
T Consensus 18 ~~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G---~~~W~~~~~~~~~~~~~~~~~dG~ 89 (276)
T 3no2_A 18 AIINKDTKEIVWEYPLEKG----WECNSVAATKAGEILFSYSKGAKMITR-DG---RELWNIAAPAGCEMQTARILPDGN 89 (276)
T ss_dssp EEEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEEECBSEEEEECT-TS---CEEEEEECCTTCEEEEEEECTTSC
T ss_pred EEEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEEeCCCCEEEECC-CC---CEEEEEcCCCCccccccEECCCCC
Confidence 5688877776554432100 001111222222 0123567888888 55 355555554 35788999999999
Q ss_pred EEEEEeC-CCcEEEEECCCCceeEEEcc------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC
Q 003106 652 LLATGGH-DKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 724 (847)
Q Consensus 652 ~Lasgs~-Dg~V~vwd~~~~~~~~~l~~------h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~ 724 (847)
+|++.+. ++.|..+|. +++.+..+.. +...+..+++.++|++|++...++.|.+||.. ++.+.++... .
T Consensus 90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~ 165 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLS-G 165 (276)
T ss_dssp EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECS-S
T ss_pred EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECC-C
Confidence 9999887 777888875 6777776642 22245567889999999999999999999986 5667777654 4
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+.++.+.+++. ++++++.++.|..||..+|+.+..+..
T Consensus 166 ~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 166 TPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 567788888877 555777778999999999999888864
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.96 E-value=4.5e-08 Score=104.49 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=142.8
Q ss_pred cceEEEecCCCeEee-------cC-C--CeEEeCCCCchhhccccccccCCCCCceEEeeecC-C---CCCCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLT-------SP-S--NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-D---TDPRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~-------~~-~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d-~---t~~~d~~v~vwd 621 (847)
...++|+++|...++ +. . ..+||..++++...... ...+.......+.+..+ + .+.....+.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-ccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence 357788999986666 22 2 35677767655321100 00000011112222233 2 111233688888
Q ss_pred ccCCceeeEe-EEee--cCCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEEccCCCCe
Q 003106 622 VSQGFSFKEA-NSVR--ASTSKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 622 ~~~~~~~~~~-~~l~--~h~~~V~~l~fspdg~~Lasgs~D---------------g~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.. + .+..+ .... .....+.+++++++|+++++...+ +.|..||.+ ++... +..+....
T Consensus 99 ~~-g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-G-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFP 174 (314)
T ss_dssp TT-S-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSE
T ss_pred CC-C-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCc
Confidence 87 5 22222 1111 112458899999999988877655 567777765 55433 33344557
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEECCCCCc-----eEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 684 TDVRFS----PSMPRLATS-SFDKTVRVWDADNPGY-----SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 684 ~~v~fs----p~~~~Lasg-s~Dg~V~iWD~~~~~~-----~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
..++|+ ++++.|+.+ ..++.|++||++..+. .+..+.++. ..+..|+++++|. ++++...++.|.+||
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEc
Confidence 899999 999766555 4688999999862132 223333443 6688999999986 665766788999999
Q ss_pred CCCCceEEEEeeCCceEEEEEecCCC-EEEEEc-CCCcEEEEcCC
Q 003106 753 INNGSCTRVFKVESFCCWCVNAMNRP-CLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 753 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~~g~i~i~d~~ 795 (847)
.++++.+..+..+...+.++.+.... .+|.+. .++.|..++..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 99888777777766677777775544 377654 44677777643
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.96 E-value=5.2e-08 Score=113.98 Aligned_cols=189 Identities=12% Similarity=-0.019 Sum_probs=131.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceEEEeccCCCC
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSAS 725 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~--~~~~~~~~~~~h~~~ 725 (847)
+.+.++++...+++|.|||..+++.+.++... ..+.++.|+||+++|++++.|+.|.+||+. + ...+.++.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec-CCC
Confidence 34556777788999999999999999888643 357799999999999999999999999995 5 566666654 334
Q ss_pred eEEEEEe----cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----------ceEEEEEec--CCCEEEEEcCCCc
Q 003106 726 VMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----------FCCWCVNAM--NRPCLWDKLDAGD 788 (847)
Q Consensus 726 V~sl~fs----p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----------~~v~~~~~~--~~~~l~~~~~~g~ 788 (847)
...++|+ |+|+++++++..++.|.|||..+.+.+..+.... ..+..+... ....++...+.|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 7899999 6999998888888999999999999888776421 123334332 2345566677888
Q ss_pred EEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE-EeCCCeEEEEEccC
Q 003106 789 IQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT-GCGDSSLSSFIAGT 846 (847)
Q Consensus 789 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s-Gs~DG~V~vW~~gt 846 (847)
|.++|............ ..........|+ + ++++|++ ...++.|.++|..+
T Consensus 322 v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~----p-dgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI--SAERFLHDGGLD----G-SHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp EEEEETTCSSEEEEEEE--ECCSSEEEEEEC----T-TSCEEEEEEGGGTEEEEEETTT
T ss_pred EEEEecCCCccceeeee--eccccccCceEC----C-CCCEEEEEeCCCCeEEEEECCC
Confidence 98888653321111111 011111112233 3 4555544 55788999999765
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.95 E-value=5.3e-08 Score=117.14 Aligned_cols=175 Identities=13% Similarity=0.022 Sum_probs=115.7
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCce--eEEE--c
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-------------AVLWHTDTLKS--KTNL--E 677 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------------V~vwd~~~~~~--~~~l--~ 677 (847)
..|++||+.++..... .+... ....++|+ |++.|+.++.|.. |++|++.+... +..+ .
T Consensus 155 ~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 155 REIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp EEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred EEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 4677888887732221 22211 13467899 9999999988744 99999987543 2223 3
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC---CcEE
Q 003106 678 E-HSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIR 749 (847)
Q Consensus 678 ~-h~~~I~~v~fsp~~~~Lasgs~----Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D---g~V~ 749 (847)
. |...+.++.|+|||++|+.... +..|++||+.++......+..+...+... |+++++.+++....| +.|.
T Consensus 230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 3 4556889999999998754432 35899999987544566666676666665 677778777776654 6799
Q ss_pred EEECCCCce--EEEEeeCCceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 750 YWSINNGSC--TRVFKVESFCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 750 iWD~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
+||+.++.+ ...+..+...+..+..+....++....++ .|.+|+..
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 999988754 23444443333366666666666666666 46677644
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.94 E-value=3.2e-07 Score=103.05 Aligned_cols=224 Identities=8% Similarity=-0.041 Sum_probs=139.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEE----ccCCCCeEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNL----EEHSSLITD 685 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l----~~h~~~I~~ 685 (847)
..++.|++||..++ ....+ +.. ..... ++|++++++|+++..++ .|.+||...+.....+ ......+.+
T Consensus 149 ~~~~~I~~id~~~g-~~~~~--~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ 223 (409)
T 3hrp_A 149 RDDPRVRLISVDDN-KVTTV--HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGA 223 (409)
T ss_dssp TTTTEEEEEETTTT-EEEEE--EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCB
T ss_pred cCCCcEEEEECCCC-EEEEe--ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEE
Confidence 35678999999876 22222 222 23333 99999999999998866 7888988765554444 224566889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE----eccCCCCe-E-EEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT----FMGHSASV-M-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~----~~~h~~~V-~-sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++|+|++..|+.+..++.|+.||..+ +..... ..++...- . .|+|+|++.+++++...++.|+.||.... +
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~-~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~ 300 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKT-QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--C 300 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTT-CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCC-CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--E
Confidence 99999666676677789999999987 332222 22222222 3 89999976778878778899999998744 3
Q ss_pred EEEeeCC---------------ceEEEEEecCCCEEEEE-c-CCCcEEEEcCCcccceeeecc-cccCCC------Cccc
Q 003106 760 RVFKVES---------------FCCWCVNAMNRPCLWDK-L-DAGDIQISDSLFINANIFCGL-GWYGSD------EIPA 815 (847)
Q Consensus 760 ~~~~~~~---------------~~v~~~~~~~~~~l~~~-~-~~g~i~i~d~~~~~~~~~~~~-~~~~~~------~~~~ 815 (847)
..+.+.. .....++++....+|.. . .++.|+.|+........+... +..+.. ....
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~ 380 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFN 380 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBS
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeC
Confidence 3333322 23566666655545544 4 567788888332221111111 111100 0112
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+...+ ++.++++-..++.|+.+.+
T Consensus 381 ~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 381 YPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 344454455 3677888888888888765
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.93 E-value=3.7e-07 Score=101.26 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=113.3
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
.|.++|..++ +.+.++.....+ .++|+|||++|+++. .++.|.+||..+++.+.++...
T Consensus 48 ~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 5778888766 445555544343 999999999999886 3678999999998888776532
Q ss_pred -CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 680 -SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 680 -~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
......++|+|||++|+++.. ++.|.++| .+ ++.+.+ +.. .. ++.+.+++.+.+++.+.||.+.+||. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 123468999999999998874 57899999 87 666666 432 22 25667777777778888999999999 8
Q ss_pred CceEEEEe-----eCCceEE-EEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 756 GSCTRVFK-----VESFCCW-CVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ~~~~~~~~-----~~~~~v~-~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
++.+.... .....+. ... ......+|.....+.+.++|..
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 87664332 1111111 111 1112334444466777777754
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.92 E-value=9.6e-08 Score=105.60 Aligned_cols=194 Identities=6% Similarity=-0.051 Sum_probs=129.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 003106 644 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD 708 (847)
Q Consensus 644 l~fspdg~~Lasgs~-----Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD 708 (847)
....||+++|++... ++.|.++|..+++.+.++.....+ . |+++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 344689998888865 679999999999999998765555 4 99999999887775 367899999
Q ss_pred CCCCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 709 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 709 ~~~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
..+ ...+.++.-. ......+.|+|||++++++... ++.|.|+|+.+++.+.++..... ..+.......+
T Consensus 116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998 6666665321 1246679999999988877653 78999999999999998865432 22333445566
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccc-cccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK-VSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+..+.+|.+.+++................ .....++. ..+...++.+++ .+.+|.|++.|+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~--~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFH--PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCS--CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceec--cccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 67888888888775432222111111111 11111111 111123444444 5568899998874
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.87 E-value=1.9e-07 Score=99.82 Aligned_cols=170 Identities=10% Similarity=0.053 Sum_probs=113.1
Q ss_pred CCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
+..|.+||..++ .++.+..... ....+++++++++|+++++...+ ....||.++....+..+..+...
T Consensus 72 ~~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~ 150 (297)
T 3g4e_A 72 GTKFCALNWKEQ-SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDI 150 (297)
T ss_dssp TTEEEEEETTTT-EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESB
T ss_pred CCeEEEEECCCC-cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccc
Confidence 457889998877 4444433321 23458899999999977765322 33456665532222333334455
Q ss_pred eEEEEEcCCCCEEEE-EeCCCcEEEEECC-CCCce-----EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 683 ITDVRFSPSMPRLAT-SSFDKTVRVWDAD-NPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 683 I~~v~fsp~~~~Las-gs~Dg~V~iWD~~-~~~~~-----~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...++|+|+++.|+. .+.++.|.+||++ ..+.. +..+..+...+..++++++|. ++++...++.|.+||..+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC
Confidence 789999999997755 4567899999974 21332 222333446788999999985 666777778899999999
Q ss_pred CceEEEEeeCCceEEEEEec--CCCEEEEEcC
Q 003106 756 GSCTRVFKVESFCCWCVNAM--NRPCLWDKLD 785 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~ 785 (847)
++.+..+..+...+.++++. +...+|..+.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 99999998876677777764 3345554443
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.87 E-value=1.3e-06 Score=92.01 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=138.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~fsp~ 691 (847)
.++.|.+||.. + .+..+ .+..+...+.++++.++++++++...++.|.+||.. ++... .+......+.++++.++
T Consensus 39 ~~~~v~~~~~~-~-~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~ 114 (300)
T 2qc5_A 39 KANKISSLDQS-G-RIKEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN 114 (300)
T ss_dssp TTTEEEEECTT-S-CEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST
T ss_pred CCCeEEEECCC-C-ceEEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC
Confidence 35678888877 4 33322 233445779999999999988887778899999988 55432 22224467899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v 769 (847)
++++++...++.|..||... ......+......+.++++++++. ++++...++.|.+||. +++... +. .....+
T Consensus 115 g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~ 190 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTADG-TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAP 190 (300)
T ss_dssp TCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred CCEEEEccCCCeEEEECCCC-CEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCc
Confidence 98777777788999999872 322223333456789999999987 6656666789999998 555443 32 233456
Q ss_pred EEEEecCCCEEEEEcC-CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKLD-AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+..+....+|.+.. .+.|.+++... ....+. .. .. ....+.+...+ ++.++++...++.|.+|+.
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~-~~----~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKIGRITTTG-EISEYD-IP-TP----NARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECTTC-CEEEEE-CS-ST----TCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred ceEEECCCCCEEEEccCCCEEEEEcCCC-cEEEEE-CC-CC----CCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 7777776667777664 45688888521 111111 00 01 11223333333 3555555556678888764
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.86 E-value=3.3e-08 Score=109.66 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=110.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.++.+++++...+|++|+.|+ ++||+++... ....+ .+.. |+.|+| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999984 6669865332 22233 4566 999999 89999998 789999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCc
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
+++. ........|...|.++.+.+. . +++++.||.|.+||++++.... ....|.|+++..+. +..+..+|.
T Consensus 113 v~sl-~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~ 183 (388)
T 1xip_A 113 LEEL-SEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDRS 183 (388)
T ss_dssp SSST-TCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTSC
T ss_pred chhh-hccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCCc
Confidence 9983 455566677888988887755 3 5678899999999999887653 23468888888777 677889999
Q ss_pred EEEEcCC
Q 003106 789 IQISDSL 795 (847)
Q Consensus 789 i~i~d~~ 795 (847)
+.+|+..
T Consensus 184 i~~~~~~ 190 (388)
T 1xip_A 184 FQSFAWR 190 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEcCC
Confidence 9999744
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.84 E-value=7.7e-07 Score=94.98 Aligned_cols=175 Identities=11% Similarity=0.034 Sum_probs=116.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc----CCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~v~f 688 (847)
..+.|..||..++. .. .+ .....+.+++|+++|+++++ . ++.|.+||.++++....... ....+.++++
T Consensus 33 ~~~~i~~~d~~~~~-~~---~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~ 105 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQ-VQ---RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV 105 (297)
T ss_dssp TTTEEEEEETTTCC-EE---EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE
T ss_pred CCCEEEEEECCCCc-EE---EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE
Confidence 45678889988762 21 22 24567999999999996555 4 56899999988765433322 1235889999
Q ss_pred cCCCCEEEEEeCC---------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCc
Q 003106 689 SPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGS 757 (847)
Q Consensus 689 sp~~~~Lasgs~D---------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~--~~~~ 757 (847)
+++|+++++...+ ....||.+...+.. ..+..+......++|+|+++.++++.+.++.|.+||+ .++.
T Consensus 106 d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 106 DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred CCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence 9999866654322 33456665542333 3333344567899999999988878888899999997 4554
Q ss_pred eE--EEE---eeCCceEEEEEecCCCEEEEEcC-CCcEEEEcCC
Q 003106 758 CT--RVF---KVESFCCWCVNAMNRPCLWDKLD-AGDIQISDSL 795 (847)
Q Consensus 758 ~~--~~~---~~~~~~v~~~~~~~~~~l~~~~~-~g~i~i~d~~ 795 (847)
.. ..+ .........+..+....+|.+.. ++.|..|+..
T Consensus 185 ~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 185 ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 32 222 22234567777777778887764 5668888854
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.79 E-value=1.6e-06 Score=94.09 Aligned_cols=170 Identities=13% Similarity=0.003 Sum_probs=112.8
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc---C-CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---H-SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h-~~~I~~v~fs 689 (847)
++.|.+||..++ ... .+. ....|.+++|+++|++++++ .+ .|.+||.++++....... . ...+.+++++
T Consensus 70 ~~~i~~~d~~~~-~~~---~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 142 (326)
T 2ghs_A 70 ERELHELHLASG-RKT---VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMH 142 (326)
T ss_dssp GTEEEEEETTTT-EEE---EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCC-cEE---EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC
Confidence 457888888766 222 222 34679999999999877765 44 499999988776433221 1 2358999999
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CC-ce--
Q 003106 690 PSMPRLATSSF------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NG-SC-- 758 (847)
Q Consensus 690 p~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--~~-~~-- 758 (847)
++|+++++... .+.|..+| + +.. ..+..+......++|+++++.++++.+.++.|.+||+. ++ ..
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--K-GKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--T-TEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--C-CcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 99986665442 24455555 3 433 33333344678999999998777777778899999986 55 32
Q ss_pred ---EEEEeeCCceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 759 ---TRVFKVESFCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 759 ---~~~~~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
+..+.........+..+....+|.+. .++.|.+|+.
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 22222233456677777777888776 3567888875
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=1.4e-06 Score=97.82 Aligned_cols=201 Identities=9% Similarity=-0.004 Sum_probs=127.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~ 716 (847)
.....|+|+++++++++...++.|++||.+++.....+... .... ++|+++++.|++++.++ .|.+||... +...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-Ccee
Confidence 46889999999998888777899999999987776555443 3334 99999999999998766 799999876 3333
Q ss_pred EEe----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE----EeeCCceE-E-EEEecC-CCEEE-EEc
Q 003106 717 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKVESFCC-W-CVNAMN-RPCLW-DKL 784 (847)
Q Consensus 717 ~~~----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~----~~~~~~~v-~-~~~~~~-~~~l~-~~~ 784 (847)
..+ ......+.+++|+|++.++++ +..++.|+.||..++..... ........ . .+.++. ...+| +..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224567889999996566665 67788999999988764332 11111111 2 555554 34444 555
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCC------ccccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDE------IPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
..+.|..|+.......+.......+... .......+.+.+ ++.++++-. .++.|++|+.
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 6677888875432111111110001000 011122333344 466777777 8899999983
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.76 E-value=3.4e-07 Score=101.17 Aligned_cols=172 Identities=15% Similarity=0.063 Sum_probs=115.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccCC---
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS--- 680 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~--- 680 (847)
++.|.++|..+. +.+.++..-..+ . ++++|||++|++++ .++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc
Confidence 357888888866 555556544444 4 99999999988775 36789999999999998875321
Q ss_pred ----CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 681 ----SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 681 ----~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.....++|+|||++|+++.. ++.|.|+|+.+ .+.+.++..- + + ..+.|.+.+.+++.+.||++.+.++.
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D-C--YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S-E--EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C-c--ceeecCCCceeEEECCCCCEEEEECC
Confidence 24567999999999988864 68999999998 6777777432 1 1 22335555455577889999999998
Q ss_pred C-CceEEEEee----CCceEE-EEEe-cCCCEEEEEcCCCcEEEEcCC
Q 003106 755 N-GSCTRVFKV----ESFCCW-CVNA-MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 755 ~-~~~~~~~~~----~~~~v~-~~~~-~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+ ++.+..... ....+. ...+ .....++..+.+|.++++|..
T Consensus 208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 255 (386)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred CCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECC
Confidence 6 554322211 111111 0112 133444446668889998864
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.75 E-value=1.5e-06 Score=94.12 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=107.9
Q ss_pred cEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
.+.+||..++ .++.+..... ....+.+++++++|+++++... .+.|..+| +++.. .+..+......++
T Consensus 110 gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 110 GLFLRDTATG-VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC 185 (326)
T ss_dssp EEEEEETTTC-CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred CEEEEECCCC-cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence 4888998777 3333322211 1246899999999997776542 24455555 45443 3333444578999
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECC--CCC-c-----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSMPRLATS-SFDKTVRVWDAD--NPG-Y-----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~~~Lasg-s~Dg~V~iWD~~--~~~-~-----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+++++.|+.+ +.++.|.+||++ + + . .+..+......+..++++++|. ++++...++.|.+||. +++.
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCE
T ss_pred EcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCE
Confidence 99999877555 457899999986 4 3 2 2223333445678899999986 5556656788999998 5777
Q ss_pred EEEEeeCCceEEEEEec--CCCEEEEEcCC
Q 003106 759 TRVFKVESFCCWCVNAM--NRPCLWDKLDA 786 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~--~~~~l~~~~~~ 786 (847)
+..+..+...+.++.+. +...+|.....
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 77787776677777765 33456655443
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.75 E-value=2.7e-07 Score=103.65 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=118.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC-----
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH----- 679 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h----- 679 (847)
+.|.++|+.+. +.+.++..-..+ .++|+||+++|+++. .++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 78899999876 555666544445 899999999988876 3678999999999998887532
Q ss_pred --CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 680 --SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 680 --~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
......+.|+|||++|+++.. +++|.+.|+.+ .+.+.++..-. . ....|++...+++.+.||.+.+.|+.+
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 223567899999999998874 57899999998 66677665321 1 344566656666788899999999966
Q ss_pred CceEEE----EeeCCceEE-EEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 756 GSCTRV----FKVESFCCW-CVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ~~~~~~----~~~~~~~v~-~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
++.... +......+. .+. ......+|.....+.+.+.|..
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 665432 221111111 011 1233556666677788888753
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.73 E-value=2.2e-07 Score=111.76 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=104.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc-------
Q 003106 636 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~------- 703 (847)
+|...|..++|||||++||.+. ++.+|+|||+++++.+... .+......++|+ |++.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999988543 3357999999999865431 111113578899 9999988887743
Q ss_pred ------EEEEECCCCCc---eEEEecc-CCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCc-eEEEEeeCCceE
Q 003106 704 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKVESFCC 769 (847)
Q Consensus 704 ------V~iWD~~~~~~---~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~D---g~V~iWD~~~~~-~~~~~~~~~~~v 769 (847)
|++|++.+... ++..... |...+.++.|+|||++++++.+.+ ..|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987432 2222333 455688999999999887776533 589999998764 445555444433
Q ss_pred EE-EEecCCCEEEEEcCC---CcEEEEcCC
Q 003106 770 WC-VNAMNRPCLWDKLDA---GDIQISDSL 795 (847)
Q Consensus 770 ~~-~~~~~~~~l~~~~~~---g~i~i~d~~ 795 (847)
.. +...+...++....+ +.|.+++..
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~ 313 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAA 313 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 33 333344344443332 457777654
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.72 E-value=7.4e-07 Score=95.45 Aligned_cols=208 Identities=13% Similarity=0.032 Sum_probs=125.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fs 689 (847)
++.+..|+. ++ . ...+..+...+.+++|+++|+++++...++.|.+||.+ ++........ ...+.+++++
T Consensus 66 ~~~i~~~~~-~g-~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d 139 (305)
T 3dr2_A 66 GRRVLGWRE-DG-T---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA 139 (305)
T ss_dssp TTEEEEEET-TS-C---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEEC
T ss_pred CCEEEEEeC-CC-C---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEEC
Confidence 455677776 33 1 23344566789999999999977766666889999986 5543222111 2346789999
Q ss_pred CCCCEEEE----EeC-------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCc
Q 003106 690 PSMPRLAT----SSF-------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGE 747 (847)
Q Consensus 690 p~~~~Las----gs~-------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~ 747 (847)
++|+++++ |.. .+.|..||..+ +...... .......++|+|+++.++++.+. ++.
T Consensus 140 ~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 140 RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 99987776 332 25677788765 3333222 34567889999999876655443 278
Q ss_pred EEEEECCCCceE--EEEe-eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 748 IRYWSINNGSCT--RVFK-VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 748 V~iWD~~~~~~~--~~~~-~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
|.+||+..+... ..+. ........+..+....+|.+..+ .|.+|+.... .+...... .. ..++.+.
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g~---~~~~~~~~--~~----~~~~~f~- 285 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDGQ---LLGHIPTP--GT----ASNCTFD- 285 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTSC---EEEEEECS--SC----CCEEEEC-
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCCC---EEEEEECC--Cc----eeEEEEe-
Confidence 999999865411 1111 11223344566667779988754 4888875322 12111111 11 2223333
Q ss_pred CCCcEEEEEeCCCeEEE
Q 003106 825 CRECCLYTGCGDSSLSS 841 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~v 841 (847)
.++..|++++.++..++
T Consensus 286 ~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWML 302 (305)
T ss_dssp TTSCEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCCeEEEE
Confidence 35667777777765554
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=7.7e-07 Score=97.22 Aligned_cols=224 Identities=8% Similarity=-0.077 Sum_probs=129.5
Q ss_pred CcceEEEecCCCeEeecC-----CCeEEeCCCCchhhcccccc--ccCCCCCceEEeeecCC----CCC-----CCCcEE
Q 003106 555 SKPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLV--EDGSLDDNVESFLSHDD----TDP-----RDAGGR 618 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~~~--~~g~~d~~v~~~~s~d~----t~~-----~d~~v~ 618 (847)
....+++++||+.+++.. ..+||.+.++++. .+.... ..+.+.....+.+..++ .+. .+..|.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 456788999999877742 1378887654432 111100 01111111112222222 111 146788
Q ss_pred EEeccCCceeeEeEEee------cCCCCEEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCceeEEEccCC--------
Q 003106 619 GMDVSQGFSFKEANSVR------ASTSKVICCHFSSDGKLL-ATGG---HDKKAVLWHTDTLKSKTNLEEHS-------- 680 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~------~h~~~V~~l~fspdg~~L-asgs---~Dg~V~vwd~~~~~~~~~l~~h~-------- 680 (847)
+||+.++. .+..+. .+...+.+++|++++..+ ++.. .++.|++||+.+++..+.+.+|.
T Consensus 97 ~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 97 AWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 99998773 222232 233457899999865554 5544 57899999999888776664421
Q ss_pred ---------------------CCeEEEEEcCCCCEEEEEeCCC-cEEEEECCC--CCc-----eE--EEeccCCCCeEEE
Q 003106 681 ---------------------SLITDVRFSPSMPRLATSSFDK-TVRVWDADN--PGY-----SL--RTFMGHSASVMSL 729 (847)
Q Consensus 681 ---------------------~~I~~v~fsp~~~~Lasgs~Dg-~V~iWD~~~--~~~-----~~--~~~~~h~~~V~sl 729 (847)
..+..|+|+|+++.|+.+..++ .|..+|... .+. .. ....++......+
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 2368899999999998887766 444444321 000 00 0112344566779
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCCCEEEEE
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~ 783 (847)
+++++|. ++++...++.|.+||.++++........ ...+.++++.....+|..
T Consensus 254 a~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 254 SIDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 9999975 7778888899999999667643333322 234555655444444433
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=4.7e-09 Score=116.43 Aligned_cols=183 Identities=12% Similarity=-0.014 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM 727 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~ 727 (847)
++.+|++++.|+.|+.||..+++.+.++.. +.+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 678999999999999999999999988876 5566666667787888888999999999987 555555433211 010
Q ss_pred -EEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc
Q 003106 728 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG 806 (847)
Q Consensus 728 -sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 806 (847)
+..+. .+. ++++++.|+.|+.||.++|+.+..+..+..... .. ....++.+..++.|..||.......-.....
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~--~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSL--SP-STSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCcccc--cc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 223 455777899999999999998877765542111 11 4556777778888888885532211111110
Q ss_pred ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 807 WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. ...... ........+++++.||.|++||..+
T Consensus 160 ~~-----~~~~~~--~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 160 DY-----AASLPE--DDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EE-----CCBCCC--CCTTCCCCEEEEETSCEEEEECTTT
T ss_pred cc-----cCcccc--CCccccceEEEECCCCEEEEEECCC
Confidence 00 000000 0000124577889999999998753
No 220
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.68 E-value=2.6e-06 Score=94.40 Aligned_cols=143 Identities=11% Similarity=0.019 Sum_probs=102.7
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003106 646 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD 710 (847)
Q Consensus 646 fspdg~~Lasgs~--Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~ 710 (847)
..+++++++++.. +. +|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777777653 22 8899999999998888754444 999999999998886 36789999998
Q ss_pred CCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEE
Q 003106 711 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 711 ~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~ 781 (847)
+ ...+.++... ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... + .+.......++
T Consensus 106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~-~~~~~~~~~~~ 181 (373)
T 2mad_H 106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-Y-HIHPGAPSTFY 181 (373)
T ss_pred C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-E-EEEeCCCceEE
Confidence 7 5555554321 1335689999999988866644 58899999 99988877 654322 2 22233444556
Q ss_pred EEcCCCcEEEEcC
Q 003106 782 DKLDAGDIQISDS 794 (847)
Q Consensus 782 ~~~~~g~i~i~d~ 794 (847)
..+.+|.+.+++.
T Consensus 182 ~~~~dg~~~~vd~ 194 (373)
T 2mad_H 182 LLCAQGGLAKTDH 194 (373)
T ss_pred EEcCCCCEEEEEC
Confidence 6777888888876
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.62 E-value=8.1e-07 Score=98.03 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=72.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
.+.++|..++ +.+.++..-..+ .++|+||+++|+++. .+++|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7888998876 566666544555 799999999999886 3689999999999999998643
Q ss_pred -CCCeEEEEEcCCCCEEEEEeC--CCcEEE--EECCC
Q 003106 680 -SSLITDVRFSPSMPRLATSSF--DKTVRV--WDADN 711 (847)
Q Consensus 680 -~~~I~~v~fsp~~~~Lasgs~--Dg~V~i--WD~~~ 711 (847)
......++|+|||++|+++.. +..|.+ +|+.+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 123568999999999998875 467888 99875
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.58 E-value=4.1e-09 Score=116.84 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=88.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC-eE-EEEEc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-IT-DVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-I~-~v~fs 689 (847)
+.|+.+..||..++ +.+..+.. +.+.+..+..+++.+++++.|+.|+.||.++++.+..+..+... +. +..+.
T Consensus 16 s~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~ 90 (369)
T 2hz6_A 16 TLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS 90 (369)
T ss_dssp ETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-
T ss_pred cCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe
Confidence 34678999999888 34444444 45556666678888888889999999999998887766543211 11 11111
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.+..|++++.|+.|+.||.++ ++.+..+..+. .+.++|++. .+++++.|+.|+.||.++|+.+..+.....
T Consensus 91 -~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-- 161 (369)
T 2hz6_A 91 -SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRWNATYFDY-- 161 (369)
T ss_dssp -----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--
T ss_pred -cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEEeEecccc--
Confidence 345778888899999999998 66666665443 234566655 455778899999999999987655543211
Q ss_pred EEEEecC----CCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMN----RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~----~~~l~~~~~~g~i~i~d~~ 795 (847)
....... ...++.+..++.+..||..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred cCccccCCccccceEEEECCCCEEEEEECC
Confidence 1111111 1456666677777777743
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.58 E-value=2.4e-06 Score=91.67 Aligned_cols=210 Identities=13% Similarity=0.093 Sum_probs=137.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..++.+..+|.. +. ....+..+...+.++.+.+++. |+.|+.++.|..||.. ++.+..+......+.++.+.+
T Consensus 113 ~t~~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GT---EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp ECTTSEEEEECTT-SC---EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred EecCCEEEEEcCC-CC---EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC
Confidence 3446778888877 52 2333444555567777777776 5567788999999998 887777766666788888887
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
++..+ .++ +.|..|| .+ +..+..+......+.++.+.++|. ++ .++.++.|..+|. +++.+..+......+.
T Consensus 187 ~g~l~-v~t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 187 DGTIY-FGS--DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIES 258 (330)
T ss_dssp TCCEE-EES--SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCS
T ss_pred CCEEE-EEe--CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccc
Confidence 77644 444 8899999 55 555666655556788899988865 44 5566788888884 5666666655444344
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..+....+|.+..++.+..++.. ......... ....+..... ..+..|+.|+.+|.|++...
T Consensus 259 ~~~~~~~g~l~v~t~~ggl~~~d~~---g~~~~~~~~-~~~~~~~~~~------d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 259 SPVIGNTDTIYFGSYDGHLYAINPD---GTEKWNFET-GSWIIATPVI------DENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp CCEECTTSCEEEECTTCEEEEECTT---SCEEEEEEC-SSCCCSCCEE------CTTCCEEEECTTSCEEEEEC
T ss_pred cceEcCCCeEEEecCCCCEEEECCC---CcEEEEEEc-CCccccceEE------cCCCEEEEEcCCCeEEEEec
Confidence 4445667789999999889888842 111111111 1111111111 13456888999999998764
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.57 E-value=5.2e-05 Score=83.24 Aligned_cols=213 Identities=8% Similarity=-0.049 Sum_probs=126.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe-----EE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI-----TD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I-----~~ 685 (847)
+..++.+..+|..++. .+..+...........+ .+..|+.++.++.|..+|..+++.+..+....... ..
T Consensus 109 ~~~~g~l~a~d~~tG~---~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGT---VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp EETTSEEEEEETTTCC---EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred EcCCCEEEEEECCCCC---EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 3456789999998883 23333322221111222 24578888899999999999999887775432211 12
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC----------e-EEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS----------V-MSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~----------V-~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+. +..++.++.++.|..+|.++ +..+..+...... + ....+. +. .++.++.++.|..+|.+
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLR 257 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCCCEEE--TT-EEEEECTTSCEEEEETT
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECC
Confidence 2222 45788888899999999998 5555544321100 1 111122 23 34467788999999999
Q ss_pred CCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 755 NGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+++.+....... ...+.. ....+|.+..++.+..+|....... .... .......... ...+..|++++
T Consensus 258 tG~~~w~~~~~~--~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~~-------~~~~~~l~v~~ 325 (376)
T 3q7m_A 258 SGQIMWKRELGS--VNDFIV-DGNRIYLVDQNDRVMALTIDGGVTL-WTQS-DLLHRLLTSP-------VLYNGNLVVGD 325 (376)
T ss_dssp TCCEEEEECCCC--EEEEEE-ETTEEEEEETTCCEEEEETTTCCEE-EEEC-TTTTSCCCCC-------EEETTEEEEEC
T ss_pred CCcEEeeccCCC--CCCceE-ECCEEEEEcCCCeEEEEECCCCcEE-Eeec-ccCCCcccCC-------EEECCEEEEEe
Confidence 998776655332 233332 3567888888889999886533221 1111 0001111111 11256788999
Q ss_pred CCCeEEEEEccC
Q 003106 835 GDSSLSSFIAGT 846 (847)
Q Consensus 835 ~DG~V~vW~~gt 846 (847)
.+|.|.+|+..+
T Consensus 326 ~~g~l~~~d~~t 337 (376)
T 3q7m_A 326 SEGYLHWINVED 337 (376)
T ss_dssp TTSEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 999999998654
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.56 E-value=4.4e-06 Score=93.81 Aligned_cols=142 Identities=9% Similarity=0.038 Sum_probs=104.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 003106 648 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP 712 (847)
Q Consensus 648 pdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~~~ 712 (847)
+++++++++... +.|.++|..+++.+.++..-..+ .|+|+||+++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 467766666542 69999999999999999865555 899999999888776 367899999998
Q ss_pred CceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 713 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 713 ~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
.+.+.++.-. ......+.|+|||++++++... ++.|.++|+.+++.+..+..... ..+.......++..+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC 236 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc
Confidence 6666665321 2345679999999988866643 68999999999999988876442 222233334555666
Q ss_pred CCCcEEEEcC
Q 003106 785 DAGDIQISDS 794 (847)
Q Consensus 785 ~~g~i~i~d~ 794 (847)
.+|.+.+.+.
T Consensus 237 ~dG~~~~V~~ 246 (426)
T 3c75_H 237 RDGSLARVDF 246 (426)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEC
Confidence 7777776665
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.53 E-value=1.8e-05 Score=94.96 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=105.1
Q ss_pred EEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCCC-
Q 003106 643 CCHFSSDGKLLATGGHDKK-------------------AVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSMP- 693 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~-------------------V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~~- 693 (847)
.+++.+++.+|+.+..++. |..||.++++.+..+.. |. ..+....+..+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 6788898899999988764 99999999999988764 21 1222223333554
Q ss_pred --EEEEEeCCCcEEEEECCCCCceEEEeccCC-C--------------------------------------CeEEEEEe
Q 003106 694 --RLATSSFDKTVRVWDADNPGYSLRTFMGHS-A--------------------------------------SVMSLDFH 732 (847)
Q Consensus 694 --~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~--------------------------------------~V~sl~fs 732 (847)
.|+.++.+|.|+++|.++ ++.+....... . .-..++|+
T Consensus 319 ~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 788899999999999998 55553221100 0 01136888
Q ss_pred cCCCeEEEEEe--------------------------------------------CCCcEEEEECCCCceEEEEeeCCce
Q 003106 733 PNKDDLICSCD--------------------------------------------GDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 733 p~g~~ll~s~s--------------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
|+...+++... .+|.|+.||+++++.+-.+..+...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 477 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF 477 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence 88774443211 1378999999999988887765533
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
...........++.++.++.++.||....
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCC
Confidence 32233345668888999999999997643
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=1.7e-05 Score=94.94 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=105.0
Q ss_pred EEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCC--
Q 003106 643 CCHFSSDGKLLATGGHDK-------------------KAVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSM-- 692 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg-------------------~V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~-- 692 (847)
.+++++++.+|+.+..++ .|..+|.++++.+..+.. |. .....+.+..+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 578889999999887664 599999999999888753 21 122333444467
Q ss_pred -CEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------CCe------------------------EEEEEecCCC
Q 003106 693 -PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------ASV------------------------MSLDFHPNKD 736 (847)
Q Consensus 693 -~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------~~V------------------------~sl~fsp~g~ 736 (847)
+.|+.++.+|.|+++|.++ ++.+..+.... ..+ ..++|+|++.
T Consensus 327 ~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred eeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 6789999999999999998 66655443111 001 1568899877
Q ss_pred eEEEEEe------------------------------------------CCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 737 DLICSCD------------------------------------------GDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 737 ~ll~s~s------------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
.+++... ..|.|..||+++++.+-.+............
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 485 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT 485 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence 5554322 1278999999999988777654322222222
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcc
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
.....++.+..++.+++||....
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC
T ss_pred eCCCEEEEECCCCcEEEEECCCC
Confidence 34556777889999999997643
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.50 E-value=3.4e-06 Score=90.38 Aligned_cols=176 Identities=12% Similarity=0.065 Sum_probs=119.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
+..|+.++.++.|..||.+ ++.+..+..+...+.++.+.+++. |+.++.++.|.+||.. +..+..+......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEecCCCceeee
Confidence 5577888889999999998 777777766666677788887775 6667788999999988 45555555555667778
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccC
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYG 809 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 809 (847)
.+..++. ++ .++ +.|..|| .+++.+..+......+.++..+....+|.+..++.+..++... ..+. .... .
T Consensus 183 ~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g--~~~~-~~~~-~ 253 (330)
T 3hxj_A 183 SIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG--TEKW-RFKT-G 253 (330)
T ss_dssp EECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS--CEEE-EEEC-S
T ss_pred EEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC--CEeE-EeeC-C
Confidence 8877766 44 344 7899999 7787777766655566677777777899999888888886421 1111 1111 1
Q ss_pred CCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 810 SDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 810 ~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
......... ..+..|++|+.+|.|..++.
T Consensus 254 ~~~~~~~~~------~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 254 KRIESSPVI------GNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp SCCCSCCEE------CTTSCEEEECTTCEEEEECT
T ss_pred CCccccceE------cCCCeEEEecCCCCEEEECC
Confidence 111111111 12456888888888887764
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.49 E-value=1.1e-05 Score=88.79 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=124.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecC---------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRAS---------TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h---------~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.++.+..+|..++. .+..+... ...+.+.- ..++..|++++.|+.|..+|.++++.+..+.......
T Consensus 61 ~~g~v~a~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 136 (376)
T 3q7m_A 61 RAGLVKALNADDGK---EIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL 136 (376)
T ss_dssp TTSEEEEEETTTCC---EEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCCeEEEEEccCCc---eeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE
Confidence 35678888887773 22222221 22333222 2245678888899999999999999887776543322
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----EEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
....+. +..++.++.++.|..+|.++ ++.+..+....... ...... +. .++.++.++.|..+|.++|+.
T Consensus 137 ~~p~~~--~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 137 SRPVVS--DGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQM 210 (376)
T ss_dssp SCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCE
T ss_pred cCCEEE--CCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcE
Confidence 222222 45788888999999999998 66555554322111 122222 23 344677789999999999998
Q ss_pred EEEEeeCCce----------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 759 TRVFKVESFC----------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 759 ~~~~~~~~~~----------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+..+...... +..........+|.+..++.+..+|.......-..... .... ....+.
T Consensus 211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~-------~~~~~~ 278 (376)
T 3q7m_A 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVND-------FIVDGN 278 (376)
T ss_dssp EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEE-------EEEETT
T ss_pred EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCC-------ceEECC
Confidence 7766543210 10111123467888888888888886532221111110 0000 111356
Q ss_pred EEEEEeCCCeEEEEEccC
Q 003106 829 CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~gt 846 (847)
.|++++.+|.|..++..+
T Consensus 279 ~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp EEEEEETTCCEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCC
Confidence 688888888888888643
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.48 E-value=6.8e-06 Score=89.60 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=91.4
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEE-------ccCCCCeEEEEEcCCCCEEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l-------~~h~~~I~~v~fsp~~~~Lasg 698 (847)
++.+..+. ..+..|+++++|+++++.. .++.++||.+++++. ..+ ..|-..+.+|+|+++++++++-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34444443 6799999999999998864 234356666554543 222 1345679999999998755544
Q ss_pred eC-----CCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCceEEEEe
Q 003106 699 SF-----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 699 s~-----Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s---~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.. ++.|.+||+.+ +..+.++.. +...+..|++++++..++++.. .++.|.+||+.+++..+.+.
T Consensus 85 ~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 33 57899999987 565555542 2245689999987666776766 67899999999888766653
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.47 E-value=3.4e-05 Score=80.79 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=132.9
Q ss_pred eeeEeEEeecCCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEe-C
Q 003106 627 SFKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSS-F 700 (847)
Q Consensus 627 ~~~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs-~ 700 (847)
+.+.+.++. |.. ....++|++|+.++++.+. ++.|+++|+.+++.+.++.-.. .....+++. ++.|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 334555553 443 3679999998755555443 5799999999999998875322 233455555 55666655 5
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--c---eEEEEEec
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--F---CCWCVNAM 775 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~---~v~~~~~~ 775 (847)
++.|.++|..+ .+.+.++......- ..++++|++++++. .++.|.++|.++.+.+..+.... . .++.+.+.
T Consensus 85 ~~~v~viD~~t-~~v~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 85 KNIGFIYDRRT-LSNIKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp CSEEEEEETTT-TEEEEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCC-CcEEEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 88999999998 67777774221222 33556788888665 58899999999999888877542 1 24455555
Q ss_pred CCCEEEEEc-CCCcEEEEcCCcccceeeeccc-cc-----CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 776 NRPCLWDKL-DAGDIQISDSLFINANIFCGLG-WY-----GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 776 ~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~-~~-----~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+ ..+|... ..+.|.+.|............+ .. ...........+++.+....++++|...+.|.+-++.
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 3 4677665 4677888886543332222221 10 0011111223344455556788889899998887763
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.43 E-value=1.2e-05 Score=96.29 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=93.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcC---CCCEEEEEe-----CCCcEEEEECCCCceeEEEccCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSS---DGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fsp---dg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
+..|+.+..+|..+|.. +..+.. +......+..+| ++..++.++ .|+.|+.||.++++.+..+....
T Consensus 127 ~~~dg~l~AlDa~TG~~---~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 203 (689)
T 1yiq_A 127 GVLDGRLEAIDAKTGQR---AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVP 203 (689)
T ss_dssp ECTTSEEEEEETTTCCE---EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EccCCEEEEEECCCCCE---eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccC
Confidence 34578999999998843 322222 111111111112 444444332 37899999999999987764210
Q ss_pred -------------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECC
Q 003106 681 -------------------------------SLITDVRFSPSMPRLATSSFDKT-------------------VRVWDAD 710 (847)
Q Consensus 681 -------------------------------~~I~~v~fsp~~~~Lasgs~Dg~-------------------V~iWD~~ 710 (847)
.....++++++...|+.++.++. |..||.+
T Consensus 204 ~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~ 283 (689)
T 1yiq_A 204 GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD 283 (689)
T ss_dssp CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT
T ss_pred CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc
Confidence 01125788998889999987764 9999999
Q ss_pred CCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 711 NPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 711 ~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+ ++.+-.+.. |. ..+.......+|+ .+++.++.+|.|+++|.++|+.+....
T Consensus 284 T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 284 T-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp T-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred C-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 9 666665543 22 1222223333443 367788999999999999999875443
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.43 E-value=1e-05 Score=86.40 Aligned_cols=154 Identities=9% Similarity=-0.002 Sum_probs=100.8
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
+..........+|+++++ +++++..++.|..|+.. ++ +..+..+...+.+++|+++|+++++...++.|.+||.+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--
Confidence 334555677899999998 66777778999999984 44 35565677789999999999866665567889999986
Q ss_pred CceEEEeccC-----CCCeEEEEEecCCCeEEEE----EeC-------------CCcEEEEECCCCceEEEEeeCCceEE
Q 003106 713 GYSLRTFMGH-----SASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 713 ~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s----~s~-------------Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
+. +..+..+ ...+..++++++|. ++++ |.. .+.|..||..+++..... ......
T Consensus 116 g~-~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 116 GQ-AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp SC-EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred CC-EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 23 2222111 23467899999987 5545 221 256888888777654443 222334
Q ss_pred EEEecCC-CEEEEEcCC------CcEEEEcCC
Q 003106 771 CVNAMNR-PCLWDKLDA------GDIQISDSL 795 (847)
Q Consensus 771 ~~~~~~~-~~l~~~~~~------g~i~i~d~~ 795 (847)
.+.+..+ ..+|..... +.|.+|+..
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 4555543 345555444 578777743
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.42 E-value=0.0001 Score=76.91 Aligned_cols=177 Identities=8% Similarity=0.042 Sum_probs=115.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|.++++.... . ...+........++++++++..|+.+ ...+.|.+++++.......+.........++++|+
T Consensus 56 ~~~~I~~~~~~g~~-~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~ 132 (267)
T 1npe_A 56 SEPSIGRASLHGGE-P--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132 (267)
T ss_dssp TTTEEEEEESSSCC-C--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred CCCEEEEEecCCCC-c--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeC
Confidence 45678888886542 1 12222233578899999976655554 45678999998754332223222246789999997
Q ss_pred CCEEEEEeC---CCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 692 MPRLATSSF---DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~---Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..|+.+.. .+.|.+++++. . ....+ .........|+|++++.+++++....+.|.++|+........+.. ..
T Consensus 133 ~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~ 209 (267)
T 1npe_A 133 RGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQ 209 (267)
T ss_dssp TTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CC
T ss_pred CCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CC
Confidence 777766654 36888888864 2 22322 223356889999999888887888889999999986544433332 22
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....++.+....+|+....+.|.+++..
T Consensus 210 ~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 210 YPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 3345555655556666667888888754
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.39 E-value=9.5e-06 Score=84.98 Aligned_cols=189 Identities=8% Similarity=-0.035 Sum_probs=126.3
Q ss_pred cceEEEecCCCeEeecC-----CCeEEeCCCCchhhcccc----ccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc
Q 003106 556 KPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDR----LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~----~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~ 626 (847)
..-+.|++||+...+.+ ..+++|+.+++....+.- +.+...+++. .+|. ..-.++.+.++|..+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-~lyv----~t~~~~~v~viD~~t~- 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-KLYQ----VVWLKNIGFIYDRRTL- 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-EEEE----EETTCSEEEEEETTTT-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-EEEE----EEecCCEEEEEECCCC-
Confidence 35688999875444433 337789999987765431 0000001111 2222 2346788999999866
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-----CCeEEEEEcCCCCEEEEEeCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-----SLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-----~~I~~v~fsp~~~~Lasgs~D 701 (847)
+.+.++..-... ...+++||++|+++..+++|.++|.++.+.+..+.-.. ..++.+.|. ++..++....+
T Consensus 97 --~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 97 --SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp --EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred --cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 455555422111 23455688888887788999999999999888876321 246788888 66444444458
Q ss_pred CcEEEEECCCCCceEEEeccC-------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 702 KTVRVWDADNPGYSLRTFMGH-------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h-------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+.|.+.|..+ ++.+..+.-. ......|+|+|+++++++++...++|.+.|+...
T Consensus 172 ~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8999999998 7777766421 1356899999999999999998899998887654
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.38 E-value=0.00015 Score=75.67 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=117.9
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~ 716 (847)
..+.+++|++++..|+.+ ..++.|.++|++.......+...-....+|++++++..|+.+. .++.|.++|++. ....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEE
Confidence 457899999976665555 4578999999986554444433335689999999876666554 577899999875 2222
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEEEe-eCCceEEEEEecC--CCEEEEEcCCCcEEE
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK-VESFCCWCVNAMN--RPCLWDKLDAGDIQI 791 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~~--~~~l~~~~~~g~i~i 791 (847)
............++++|++.+++++... .+.|.++++.... ...+. ........++++. ...+|+....+.|.+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 2222223567899999987777766544 4688888886433 33332 2233455566553 345566667778888
Q ss_pred EcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 792 SDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
++........+.. .... .+.+.. ..+.++++...++.|.+++..
T Consensus 194 ~~~~g~~~~~~~~----~~~~----P~gi~~--d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 194 LNPAQPGRRKVLE----GLQY----PFAVTS--YGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTEEEEEEEEE----CCCS----EEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred EecCCCceEEEec----CCCC----ceEEEE--eCCEEEEEECCCCeEEEEeCC
Confidence 8865322111111 1111 112221 134455555566888888764
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.36 E-value=6.1e-05 Score=83.98 Aligned_cols=145 Identities=13% Similarity=0.151 Sum_probs=105.7
Q ss_pred CCCCCcEEEEeccCC-ceeeEeEEee-------cCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEE
Q 003106 611 DPRDAGGRGMDVSQG-FSFKEANSVR-------ASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~-~~~~~~~~l~-------~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~~l 676 (847)
+..+..|.++|+.+. ...+.+++++ .-...-..+++.||| +++++..+ +.|.++|.++++++.++
T Consensus 102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~ 180 (462)
T 2ece_A 102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW 180 (462)
T ss_dssp BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC
T ss_pred cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE
Confidence 556789999998743 2345555552 111245567888999 77777665 78999999999999998
Q ss_pred ccCC---CCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCCceEEEeccC--CCCeEEEEE-
Q 003106 677 EEHS---SLITDVRFSPSMPRLATSS-------------------FDKTVRVWDADNPGYSLRTFMGH--SASVMSLDF- 731 (847)
Q Consensus 677 ~~h~---~~I~~v~fsp~~~~Lasgs-------------------~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~f- 731 (847)
.... ..-..+.|+|+++.+++.. .+.+|.+||+.+ ++.+.++... ......|.|
T Consensus 181 ~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~ 259 (462)
T 2ece_A 181 EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPL 259 (462)
T ss_dssp CSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEEC
T ss_pred ccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCCCccceeEee
Confidence 6322 2245688999999988885 378999999998 6667666532 134556666
Q ss_pred -ecCCCeEEEEEe-----CCCcEEEEECCCCc
Q 003106 732 -HPNKDDLICSCD-----GDGEIRYWSINNGS 757 (847)
Q Consensus 732 -sp~g~~ll~s~s-----~Dg~V~iWD~~~~~ 757 (847)
+|++++.++++. .+++|.+|....++
T Consensus 260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 260 HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp SSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred ECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 999998888888 88899888776553
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.35 E-value=6.2e-05 Score=83.93 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=104.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeec--C-CCCEEEEEEcCCCCEEEEEe-------------------CCCcEEEEEC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRA--S-TSKVICCHFSSDGKLLATGG-------------------HDKKAVLWHT 667 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~--h-~~~V~~l~fspdg~~Lasgs-------------------~Dg~V~vwd~ 667 (847)
.+...+.+.++|..+. +.+.++.. . ...-.++-|+|+++.+++.. .+.+|.+||+
T Consensus 159 ~g~~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 159 EGEGPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TSCSCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCCCCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4455678889998866 45555542 2 22345688999999999885 3689999999
Q ss_pred CCCceeEEEccC-C-CCeEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCCce--EEE--ecc------------
Q 003106 668 DTLKSKTNLEEH-S-SLITDVRF--SPSMPRLATSS------FDKTVRVWDADNPGYS--LRT--FMG------------ 721 (847)
Q Consensus 668 ~~~~~~~~l~~h-~-~~I~~v~f--sp~~~~Lasgs------~Dg~V~iWD~~~~~~~--~~~--~~~------------ 721 (847)
.+++.+.++... . .....|+| +|+++++++++ .+++|.+|..+. +.. ... +..
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCcccccccccccc
Confidence 998888887643 1 33456666 99999887666 567888776654 221 111 100
Q ss_pred ----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---CceEEEEee
Q 003106 722 ----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKV 764 (847)
Q Consensus 722 ----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---~~~~~~~~~ 764 (847)
-...+..|.+++||++|++++-..+.|.+||+.. .+.+..+..
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 0245788999999999998988899999999863 344545544
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.35 E-value=6.5e-05 Score=89.70 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=102.7
Q ss_pred EEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCCC-
Q 003106 643 CCHFSSDGKLLATGGHDKK-------------------AVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSMP- 693 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~-------------------V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~~- 693 (847)
.+++.++..+|+.++.++. |..+|.++++.+..+.. |. ..+....+..+++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 4788888889988887763 99999999999888764 22 2233333334565
Q ss_pred --EEEEEeCCCcEEEEECCCCCceEEEeccCC-----------C-C------------------------eEEEEEecCC
Q 003106 694 --RLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------A-S------------------------VMSLDFHPNK 735 (847)
Q Consensus 694 --~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------~-~------------------------V~sl~fsp~g 735 (847)
.|+.++.+|.|+++|.++ ++.+..+.... . . -..++|+|+.
T Consensus 314 ~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEECCCCEEEEEECCC-CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688899999999999998 56553322111 0 0 0126778876
Q ss_pred CeEEEEE-----------------------------------eCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 736 DDLICSC-----------------------------------DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 736 ~~ll~s~-----------------------------------s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
..+++.. ..+|.|..||+++++.+-.+.................+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV 472 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEE
Confidence 6544321 12488999999999988777654432222222355677
Q ss_pred EEEcCCCcEEEEcCCcc
Q 003106 781 WDKLDAGDIQISDSLFI 797 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~ 797 (847)
+.+..++.++.||....
T Consensus 473 f~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEECTTSEEEEEETTTC
T ss_pred EEECCcccchhhhhhcC
Confidence 88899999999997643
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.34 E-value=3.8e-05 Score=79.64 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=106.7
Q ss_pred eEeEEeecCCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCc
Q 003106 629 KEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKT 703 (847)
Q Consensus 629 ~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~ 703 (847)
+.+.++ .|... ...|.|+ ++.++++++.+| .|+++|+++++.+..+.... .+....+.++++.|+... .++.
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 444555 45443 4688998 777777777776 89999999999998886433 333322333466776665 4889
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--Cce---EEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SFC---CWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~~---v~~~~~~~~~ 778 (847)
+.+||..+ ...+.++.... .-+.++ ++++.++++. .++.|.++|..+.+.+..+... ... +..+.+.+ .
T Consensus 109 v~v~D~~t-~~~~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~-G 182 (262)
T 3nol_A 109 GFVWNIRN-LRQVRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD-G 182 (262)
T ss_dssp EEEEETTT-CCEEEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET-T
T ss_pred EEEEECcc-CcEEEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC-C
Confidence 99999998 77777776422 223344 5677777554 4788999999999988887753 222 23344443 4
Q ss_pred EEEEEc-CCCcEEEEcCCcc
Q 003106 779 CLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 779 ~l~~~~-~~g~i~i~d~~~~ 797 (847)
.+|... ....|.+.|....
T Consensus 183 ~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp EEEEEETTSSEEEEECTTTC
T ss_pred EEEEEEccCCeEEEEECCCC
Confidence 677665 4667888886543
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.34 E-value=2.2e-05 Score=93.95 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=97.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecC-C----CCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAS-T----SKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h-~----~~V~~l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
..++.+..+|..++. .+..+..+ . ..+.+.-.- .+..|++++. ++.|+.||.++++.+..+....
T Consensus 135 ~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 210 (677)
T 1kb0_A 135 AWDGRLIALDAATGK---EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP 210 (677)
T ss_dssp CTTSEEEEEETTTCC---EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred cCCCEEEEEECCCCC---EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCC
Confidence 457889999999883 33444333 1 112211111 2345555543 7999999999999988775422
Q ss_pred CC--------------------------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEEC
Q 003106 681 SL--------------------------------ITDVRFSPSMPRLATSSFDK-------------------TVRVWDA 709 (847)
Q Consensus 681 ~~--------------------------------I~~v~fsp~~~~Lasgs~Dg-------------------~V~iWD~ 709 (847)
.. ...++|++++..|+.+..++ +|..+|.
T Consensus 211 ~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~ 290 (677)
T 1kb0_A 211 GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP 290 (677)
T ss_dssp CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence 11 13578899999998887664 5999999
Q ss_pred CCCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 710 DNPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 710 ~~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
++ ++.+-.+.. |. .....+....+|+ .+++.++.+|.|+++|.++|+.+..+..
T Consensus 291 ~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 291 DT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp TT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 98 666655532 21 1233334444663 5677899999999999999998877653
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00018 Score=77.26 Aligned_cols=197 Identities=7% Similarity=-0.083 Sum_probs=111.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSP-SMPRLATSSF------------ 700 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~I~~v~fsp-~~~~Lasgs~------------ 700 (847)
..+.+|++.++...|+.+...+.|.++|.++++. ..+.. .......|++.+ +|+..++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578999997333455555555688888775543 22211 123478999999 8876665432
Q ss_pred -----CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEE
Q 003106 701 -----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVN 773 (847)
Q Consensus 701 -----Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~ 773 (847)
++.|..||..+ +.. ..+.........|+|+++++.++++-..++.|.+||+.... ....+..... ...+.
T Consensus 159 ~~~~~~g~v~~~d~~~-~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPST-KET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTT-TEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred cccCCCceEEEEeCCC-CEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 36788899875 332 22222223456799999998777676777899999987531 1222222222 55666
Q ss_pred ecCCCEEEEEcCC-----------CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 774 AMNRPCLWDKLDA-----------GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 774 ~~~~~~l~~~~~~-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.+....+|..... +.|..++... .++..+........ .....+. ..++.++++...++.|.++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~~g~~~-~~~~~~~--~~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---NILEVIPLPPPFAG-EHFEQIQ--EHDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---CEEEEEECCTTTTT-SCCCEEE--EETTEEEEECSSCSEEEEE
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCC---CEEEEEECCCCCcc-ccceEEE--EeCCEEEEeecCCCceEEE
Confidence 6766678876643 4566776432 11211111110000 0011111 1135555565677888888
Q ss_pred Ecc
Q 003106 843 IAG 845 (847)
Q Consensus 843 ~~g 845 (847)
++.
T Consensus 310 ~~~ 312 (322)
T 2fp8_A 310 VYD 312 (322)
T ss_dssp EC-
T ss_pred ecc
Confidence 763
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.27 E-value=0.00033 Score=85.28 Aligned_cols=174 Identities=9% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc----cCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR------ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHS 680 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~------~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~----~h~ 680 (847)
+..++.+.+||..++ .++....-. -....|.+++..+++++|..|+.++-|.+||..+++...... ...
T Consensus 373 Gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQ-RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EESSSCEEEECTTTC-CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EECCCCeEEEcCCCC-cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 444567888887765 333222110 124679999998888867778887889999988776543321 234
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
..|.++...+++... .|+. +.|.+||..+ +. ...+.. ....|.++...++|. +.+. +. +-|.+||.
T Consensus 452 ~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig-t~-~Gl~~~~~ 524 (795)
T 4a2l_A 452 ENVYAILPDGEGNLW-LGTL-SALVRFNPEQ-RS-FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIG-GE-EGLSVFKQ 524 (795)
T ss_dssp SCEEEEEECSSSCEE-EEES-SCEEEEETTT-TE-EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEE-ES-SCEEEEEE
T ss_pred CeeEEEEECCCCCEE-EEec-CceeEEeCCC-Ce-EEEccccccccccCCceEEEEEECCCCC-EEEE-eC-CceEEEeC
Confidence 679999999888644 4444 4588999876 33 333321 235789999998877 4433 33 45888998
Q ss_pred CCCceEEEEe-------eCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 754 NNGSCTRVFK-------VESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 754 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.+++. .+. .....|.++..+....+|.++.. .+..|+..
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 87765 332 12346788888888899998887 56677643
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.26 E-value=5.4e-05 Score=78.59 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=114.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~ 718 (847)
...|.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++. ++.|+... .++.+.+||..+ .+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T-l~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP-PQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT-TEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCc-CcEEEE
Confidence 4688887 4667778888899999999999998887 3222 22345554 45555444 588999999998 777777
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--c---eEEEEEecCCCEEEEEc-CCCcEEEE
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--F---CCWCVNAMNRPCLWDKL-DAGDIQIS 792 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~---~v~~~~~~~~~~l~~~~-~~g~i~i~ 792 (847)
+..- ..-+.|+ +++++++++- .++.|.++|..+.+.+..+.... . .+..+.+.+. .+|... ....|.+.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~vI 206 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVLEI 206 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEEEE
Confidence 7642 2234455 4567777554 58899999999999888877532 2 2334444443 677665 46678888
Q ss_pred cCCcccceeeeccc-cc---C--CCCccccccccccccCCCcEEEEEe
Q 003106 793 DSLFINANIFCGLG-WY---G--SDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 793 d~~~~~~~~~~~~~-~~---~--~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
|...........+. .. . ..........+++.+....+++||-
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 86543322222221 10 0 1111122233444555567788773
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00019 Score=73.81 Aligned_cols=159 Identities=14% Similarity=0.003 Sum_probs=104.8
Q ss_pred eEeEEeecCCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccCCCC-eEEEEEcCCCCEEEEEe-CCC
Q 003106 629 KEANSVRASTS--KVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS-FDK 702 (847)
Q Consensus 629 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~~~-I~~v~fsp~~~~Lasgs-~Dg 702 (847)
+.+.++ .|.. -.-.+.|+. +.++.+.+.+| .|+++|+++++.+..+...... -..+++. ++.|+... .++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 444444 4543 355889985 56666666654 8999999999999887643322 2334443 56665554 588
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----ceEEEEEecCC
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----FCCWCVNAMNR 777 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----~~v~~~~~~~~ 777 (847)
.+.+||..+ ...+.++.... .-+.|+ +++..+++|- .++.|.++|..+.+.+..+.... ..+..+.+.+
T Consensus 86 ~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~- 159 (243)
T 3mbr_X 86 EGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN- 159 (243)
T ss_dssp EEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-
T ss_pred EEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC-
Confidence 999999998 77777776432 234455 5667777665 58899999999999888877532 2233444443
Q ss_pred CEEEEEc-CCCcEEEEcCCcc
Q 003106 778 PCLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 778 ~~l~~~~-~~g~i~i~d~~~~ 797 (847)
..+|... ....|.+.|....
T Consensus 160 G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTC
T ss_pred CEEEEEECCCCeEEEEECCCC
Confidence 3566554 5667888886543
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.21 E-value=0.00057 Score=83.16 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--------
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR----ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------- 678 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------- 678 (847)
+..++.+.+|+..+. .++...... -....|.+++...+|. |..|+.++-|.+||..++........
T Consensus 326 gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRN-RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp EESSSCEEEECGGGG-SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred EECCCCeEEeCCCcc-cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 334566777776554 232222111 1245699999988876 45577777899999887655433211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-----~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
....|.++...++++.|..|+.++.|.+||..+ +. +..+. .....|.++...++|. +++ |+. +-|.+||.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~ 478 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNP 478 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEET
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeC
Confidence 235799999988887677888888899999987 43 33332 1345799999988876 443 333 45889999
Q ss_pred CCCceEEEEee------CCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 754 NNGSCTRVFKV------ESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 754 ~~~~~~~~~~~------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
++++....... ....|.++..+....+|.+.. +.+..++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQ 524 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEE
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeC
Confidence 88765433221 235678888888889999988 55666664
No 247
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.16 E-value=0.0012 Score=70.78 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=125.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..|+.+.. ... +-.....+..++|++++..|+.+ ..++.|..++++. ......+...-.....|+++
T Consensus 10 ~~I~~i~~~~~~-~~~---~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 10 HEVRKMTLDRSE-YTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp SSEEEEETTSCC-CEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CeEEEEECCCcc-eEe---hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence 457778877652 211 22234568899999866555544 4568999999875 22222333233456889998
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEE-eeCC
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVF-KVES 766 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~-~~~~ 766 (847)
+.+..|+.+ ..++.|.++|.+. ......+.........|+++|.+.+++++.... +.|..+++... ....+ ...-
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~ 163 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 163 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred ecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCC
Confidence 766666544 5678999999875 333333333445788999999878777665544 78888888643 33333 2233
Q ss_pred ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.....++++ ....+|+-...+.|..++........+..... .....+.+... .+.++++-...+.|..++.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~-----~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-----RLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-----TTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC-----ccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 345556555 45566777777888888865333222222100 00011122221 3556666666777777664
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.00065 Score=75.30 Aligned_cols=215 Identities=10% Similarity=0.042 Sum_probs=129.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+.+++... ... .+......+..++|.+.+..|+ +-...+.|..|+++.......+.........|++++.+.
T Consensus 96 ~~I~~i~~~~~-~~~---~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRS-EYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSC-CCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred ccceeeccCCC-cEE---EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence 45677777654 222 2222345688999998655555 445678899999986655444443334567889998666
Q ss_pred EEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCceEEE
Q 003106 694 RLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 694 ~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+ ...+.|.+.+++. ......+.........|+++|.+..++++-..+ +.|..+++........+...-.....
T Consensus 172 ~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 250 (386)
T ss_dssp EEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred eEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeee
Confidence 66544 4577888888875 333333333446689999999888777666555 78999998755433333333334555
Q ss_pred EEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 772 VNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 772 ~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++ ....+|+-...+.|..++........+..... .....++. ..+.++++-...+.|..++
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-------~~P~giav--~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL-------PHPFAITV--FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC-------SSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC-------CCceEEEE--ECCEEEEeeCCCCeEEEEE
Confidence 5554 55567777777888888854322222222111 01111222 2355666666777777665
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.00087 Score=81.36 Aligned_cols=176 Identities=10% Similarity=0.018 Sum_probs=113.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSV-------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSS 681 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~ 681 (847)
..++.+..++..+. .++..... .-....|.+++...+|++ ..|+.++-|.+||..++...... .....
T Consensus 330 t~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 330 TWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp EBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred ecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 34566777777654 33322111 112456999999887764 45666667999998754332211 12346
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.|.++...+++. |..|+.++.|.+||..+ +. +..+. .....|.++...+++. ++ .|+. +-|.+||..+++.
T Consensus 408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTTSC-EEEEETTEEEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSC
T ss_pred ceEEEEECCCCC-EEEEeccCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeE
Confidence 799999888775 55577777899999876 33 33332 1346799999888765 44 3444 5688999988765
Q ss_pred EEEEeeC-----CceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 759 TRVFKVE-----SFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~~~~-----~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....... ...+.++..+....+|.++.++-+..++..
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD 523 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence 5443322 356888888888999999986567777754
No 250
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.05 E-value=0.0012 Score=73.26 Aligned_cols=177 Identities=8% Similarity=-0.031 Sum_probs=115.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+. .+ ..+.........|++.+.+..| ++-...+.|.+++++.......+...-.....|+++|.
T Consensus 136 ~~~~I~r~~~~g~~-~~--~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 136 TLDRILRANLNGSN-VE--EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp TTTEEEEEETTSCC-EE--EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT
T ss_pred CCCcEEEEecCCCC-cE--EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC
Confidence 45677778876552 11 1222223345678888755544 55555678999888754443334444456799999998
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+.. + +.|..++++. ..........-.....|+|++++.+|+++-...+.|..+|+........+.......
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P 291 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 291 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE
T ss_pred CCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc
Confidence 777766654 3 6788888874 222222233344578999999888888777778899999987554444444333445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
..++.+....+|+....+.|..++
T Consensus 292 ~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 292 FAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCEEEEeeCCCCeEEEEE
Confidence 566666777888888888888887
No 251
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0021 Score=71.52 Aligned_cols=217 Identities=11% Similarity=-0.008 Sum_probs=128.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..++... ... .+......+..|+|++.+..|+.+ ...+.|+.++++.. .....+.........|++.
T Consensus 92 ~~I~~i~l~~~-~~~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD 167 (400)
T 3p5b_L 92 HEVRKMTLDRS-EYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167 (400)
T ss_dssp TEEEEECTTSC-SCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred ceeEEEccCCc-cee---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence 45677777654 222 223345678999999866655555 45688999998752 2333343344567899999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+ ...+.|.+.|++. ......+.........|+++|.+.+++++-.. .+.|...++........+...-.
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~ 246 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 246 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS
T ss_pred ecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC
Confidence 865555554 4678899999875 33333333344568999999987777766533 37899999875544444343334
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
....++++ ....+|+-.....|..++........+..... .......++. ..+.++++-...+.|..++
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-----~l~~P~gl~v--~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-----RLAHPFSLAV--FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS-----TTSSEEEEEE--ETTEEEEEESSSCSEEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC-----CCCCCEEEEE--eCCEEEEecCCCCeEEEEE
Confidence 55556655 45566777777888888754333322222100 0001111111 2345666666667776665
No 252
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0022 Score=69.92 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=114.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+. .+. .+.........+++.+.+.. +++-...+.|.+++++.......+...-.....|+++|.
T Consensus 93 ~~~~I~r~~~~g~~-~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~ 169 (349)
T 3v64_C 93 TLDRILRANLNGSN-VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 169 (349)
T ss_dssp TTTEEEEEETTSCS-CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT
T ss_pred cCCceEEEecCCCC-ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC
Confidence 45677777776552 111 12222345678899875554 455556788999998854443334344456789999997
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+..|+.+.. + +.|..++++. .....+ ...-.....|+|++++.+++++-...+.|..+|+........+......
T Consensus 170 ~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 247 (349)
T 3v64_C 170 EGTIYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 247 (349)
T ss_dssp TTEEEEEECSSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS
T ss_pred cCeEEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC
Confidence 776665554 4 7788888874 223333 2233457899999988888877777789999998754433344333344
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
...++...+..+|+....+.|..++
T Consensus 248 P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 248 PFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCEEEEecCCCCeEEEEE
Confidence 5556666677778887888888776
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0012 Score=71.91 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=111.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
.|+..++... ... .+......+..++|++.+..|+.+ ...+.|..++++.......+.........|++.+.+..
T Consensus 54 ~I~~i~~~g~-~~~---~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 54 DIRQVLPHRS-EYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp CEEEECTTSC-CEE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred ceEEEeCCCC-eeE---EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence 4666666544 221 222233458899999865555544 46788999999866554444433345678999986666
Q ss_pred EEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 695 LATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
|+.+ ...+.|.+.+++. ......+.........|+++|.+..++++-..+ +.|..+++........+...-.....+
T Consensus 130 ly~~d~~~~~I~~~~~dG-~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEETTTTEEEEEETTS-CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred EEEEcCCCCeEEEEcCCC-CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 6544 4578899999875 333333333445688999999877777676666 789999887543332223233345556
Q ss_pred Eec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 773 NAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 773 ~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+++ ....+|+-...+.|..++...
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 654 455666777777888887543
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.97 E-value=0.0061 Score=65.33 Aligned_cols=180 Identities=8% Similarity=0.017 Sum_probs=112.6
Q ss_pred CCCcEEEEeccCCceeeEeE-EeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSFKEAN-SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~-~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
..+.|..+++.......... .+.........+++.+.+..| ++-..++.|.++|++.......+...-.....|+++|
T Consensus 50 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 50 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET
T ss_pred CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCC
Confidence 45677777776510001111 122233456789998755544 5556678999999885444333333445678999999
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--C
Q 003106 691 SMPRLATSSFD--KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--E 765 (847)
Q Consensus 691 ~~~~Lasgs~D--g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~ 765 (847)
.+..|+.+... +.|..++++. .....+ ...-.....|+|++++.+++++-...+.|.++|+........+.. .
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG--~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~ 207 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCC--CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCc
Confidence 77777666543 6788888864 333333 223456889999998888887777778999999985433222222 1
Q ss_pred CceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 766 SFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 766 ~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
......++.+....+|+....+.|..++.
T Consensus 208 ~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 208 LAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 23345566666777788878888888874
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0023 Score=77.69 Aligned_cols=174 Identities=11% Similarity=0.033 Sum_probs=110.6
Q ss_pred CCcEEEEeccCCceeeEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp 690 (847)
++.+.+||..++ .+..... .......|.++...+++.+.+ |+.++-|.+||..+++...... .....|.++...+
T Consensus 382 ~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 382 GGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp SSCEEEEETTEE-EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred CCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 455777776543 2221110 022346799999887776554 6776779999987765433221 2346799999888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV- 764 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~- 764 (847)
++. |..|+. +.|.+||..+ +......... ...|.+|...++|. +. .|+.++-|..||.++++... +..
T Consensus 460 ~g~-lwigt~-~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~-~~~~ 533 (781)
T 3v9f_A 460 NKK-IWIGTH-AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLVRK-FNQY 533 (781)
T ss_dssp TSE-EEEEET-TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEEEE-ECTT
T ss_pred CCC-EEEEEC-CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeEEE-ccCC
Confidence 775 555565 5689999886 3322222111 35799999998877 44 34443447789988765433 321
Q ss_pred ---CCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 765 ---ESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 765 ---~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....|.++..+....+|.++..|.+..++..
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLATGEGLVCFPSAR 567 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEETTEEEEESCTT
T ss_pred CCCCCCeeEEEEECCCCCEEEEECCCceEEECCC
Confidence 2346788888888899999886654777754
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.93 E-value=0.00012 Score=88.66 Aligned_cols=114 Identities=9% Similarity=0.073 Sum_probs=78.5
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-ceeE-EEccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 003106 640 KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRV 706 (847)
Q Consensus 640 ~V~~l~fs-pdg~~Lasgs~-Dg----~V~vwd~~~~-~~~~-~l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~i 706 (847)
.+...+|| |||++||.+.. +| +|+++|++++ +.+. .+. ....+++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68899999 99998886543 22 5999999988 6321 121 113578899999988776655 25888
Q ss_pred EECCCCCc-eEEEec-cCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCC
Q 003106 707 WDADNPGY-SLRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG 756 (847)
Q Consensus 707 WD~~~~~~-~~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~ 756 (847)
|++.+... ....+. .......++.|+|||++|+++... ...|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 88876321 123332 233456789999999988776643 346888899875
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.93 E-value=0.0016 Score=78.86 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=103.2
Q ss_pred CcceEEEe-cCCCeEeec----CC----CeEEeCCCC-chhhc-cccccccCC--CCCceEEeeecCCCCCCCCcEEEEe
Q 003106 555 SKPLMMFG-TDGAGTLTS----PS----NQLWDDKDL-ELRAD-MDRLVEDGS--LDDNVESFLSHDDTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s-~dG~~~~~~----~~----~~iWD~~~~-~~~~~-~~~~~~~g~--~d~~v~~~~s~d~t~~~d~~v~vwd 621 (847)
......|| |||+.++.. +. ..++|+.++ +...+ +........ -|+....+...+ .......|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d-~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKD-ETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEEC-TTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEEC-CCCCCCEEEEEE
Confidence 45667999 999987643 22 367898887 53221 111111111 122222222211 122224577777
Q ss_pred ccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEE-ccCCCCeEEEEEcCCCC
Q 003106 622 VSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK-SK--TNL-EEHSSLITDVRFSPSMP 693 (847)
Q Consensus 622 ~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~-~~--~~l-~~h~~~I~~v~fsp~~~ 693 (847)
+.++.. .....+. ........+.|+|||++|+..+. ...|+++|++++. .. ..+ ......+.++.|+..+.
T Consensus 254 lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred CCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 766522 1112222 23345678999999998887653 3468889988652 22 333 33445567777654443
Q ss_pred EEEEEeCC----CcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcE--EEEEC
Q 003106 694 RLATSSFD----KTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI--RYWSI 753 (847)
Q Consensus 694 ~Lasgs~D----g~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V--~iWD~ 753 (847)
+++....+ ..|.++|+.++ ..... +..+...+.--.|...++.++++...|+.. .++|+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 44444443 25677777642 22222 223433333233444566788888888864 45565
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.93 E-value=0.00022 Score=82.18 Aligned_cols=179 Identities=7% Similarity=-0.040 Sum_probs=122.5
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeec-CCCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRA-STSKVICCHF-S-SDGKLLATGG------------------HDKKAVLWHTDT 669 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~l~f-s-pdg~~Lasgs------------------~Dg~V~vwd~~~ 669 (847)
+..+..|.+.|+.+. ++...+.- ....+..+++ + |++++|++++ .++.|.++|.++
T Consensus 108 d~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t 184 (595)
T 1fwx_A 108 DKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 184 (595)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred cCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence 344667889999876 44443322 2345889998 5 8999999885 245799999999
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cEEEEECCC
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--------------------------------------TVRVWDADN 711 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--------------------------------------~V~iWD~~~ 711 (847)
.+.+..+.--. .-..++++|+|+++++++.+. .|.|.|.++
T Consensus 185 ~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 185 WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 99988876433 346788999999998888553 477777775
Q ss_pred --CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------------eEEEEeeCCceEEEEEecCC
Q 003106 712 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------CTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 712 --~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------------~~~~~~~~~~~v~~~~~~~~ 777 (847)
....+..+.. .....++.|+|||+++++++..+.+|.++|+.+.+ .+..+..... .+-+.|+.+
T Consensus 264 ~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~d 341 (595)
T 1fwx_A 264 EASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGR 341 (595)
T ss_dssp GGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTT
T ss_pred cCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCC
Confidence 2221333322 23467799999999999888889999999999653 2333333333 444555544
Q ss_pred CEEE-EEcCCCcEEEEcCC
Q 003106 778 PCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 778 ~~l~-~~~~~g~i~i~d~~ 795 (847)
..+| +..-++.|.+|+..
T Consensus 342 G~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp SEEEEEETTTTEEEEEEHH
T ss_pred CeEEEEEecCCcEEEEEhh
Confidence 4555 45567778889843
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.92 E-value=0.00094 Score=79.63 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=93.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecC----CCCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAS----TSKVIC-CHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~-l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
..++.+..+|..++. .+..+... ...+.+ ..+ .++ .|++++. +|.|+.||.++++.+..+....
T Consensus 124 ~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 124 TLDGRLIALDAKTGK---AIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp CTTSEEEEEETTTCC---EEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred cCCCEEEEEECCCCC---EeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 457889999999884 33332221 011111 011 144 4555432 5899999999999988775210
Q ss_pred -------------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECC
Q 003106 681 -------------------------------SLITDVRFSPSMPRLATSSFDKT-------------------VRVWDAD 710 (847)
Q Consensus 681 -------------------------------~~I~~v~fsp~~~~Lasgs~Dg~-------------------V~iWD~~ 710 (847)
.....++++++...++.++.++. |..+|.+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~ 278 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD 278 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC
Confidence 01124788888888988887763 9999999
Q ss_pred CCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 711 NPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 711 ~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+ ++.+-.+.. |. ..+....+..+|+ .+++.++.+|.|+++|.++|+.+..+.
T Consensus 279 t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 279 T-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp T-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred C-CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 8 666655543 22 2233333334554 357788999999999999999885544
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.90 E-value=0.0014 Score=76.61 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=97.4
Q ss_pred EEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEccC--C--------CCeEEEEEcCCCC---E
Q 003106 644 CHFSSDGKLLATGGHD----------------KKAVLWHTDTLKSKTNLEEH--S--------SLITDVRFSPSMP---R 694 (847)
Q Consensus 644 l~fspdg~~Lasgs~D----------------g~V~vwd~~~~~~~~~l~~h--~--------~~I~~v~fsp~~~---~ 694 (847)
+++.++...|+.+..+ +.|..+|.++++.+..+... . .++ -+....+|+ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence 5666766677766532 35999999999998877532 1 222 123334674 5
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCC-------------CCe--------------------------EEEEEecCC
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHS-------------ASV--------------------------MSLDFHPNK 735 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-------------~~V--------------------------~sl~fsp~g 735 (847)
|+.++.+|.|+++|.++ ++.+..+.-.. ..| ..++|+|+.
T Consensus 319 v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67888999999999998 56555443111 011 235788887
Q ss_pred CeEEEEEe------------------------------------CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCE
Q 003106 736 DDLICSCD------------------------------------GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPC 779 (847)
Q Consensus 736 ~~ll~s~s------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~ 779 (847)
..+++.+. .+|.|..||+++++.+-.+.................
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL 477 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence 75554431 357899999999998877765432211111233567
Q ss_pred EEEEcCCCcEEEEcCCc
Q 003106 780 LWDKLDAGDIQISDSLF 796 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~ 796 (847)
++.+..++.++.+|...
T Consensus 478 v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKD 494 (571)
T ss_dssp EEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCC
Confidence 77788999999999654
No 261
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.89 E-value=0.0039 Score=75.38 Aligned_cols=177 Identities=10% Similarity=-0.012 Sum_probs=111.7
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..++... . ...+......+..|+|.+.+..| ++-...+.|+.++++.. .....+.........|++.
T Consensus 404 ~~Ir~i~l~~~-~---~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRS-E---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSC-C---CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCC-c---ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 34566666544 1 22233345678899999855555 45455678999998752 2333343344567889999
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+. ..+.|.+.+++. ......+.........|+++|.+.+|+++-..+ +.|.+.++........+...-.
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~ 558 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 558 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred ecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence 8876665554 578899999985 333333333445689999999877777665443 7899999875554444443434
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
....++++ ....+|+-.....|..++...
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 55566655 555677777777788887543
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.0023 Score=71.92 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=86.1
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCcee--EEEccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K----KAVLWHTDTLKSK--TNLEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g----~V~vwd~~~~~~~--~~l~~h~~~I~~v~ 687 (847)
+.|+++|+..+ . +..+.........|+|++++++|+.+... + .|.+++.+ +... ..+.. .....+++
T Consensus 159 ~~I~~id~~~~-~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~gia 232 (430)
T 3tc9_A 159 HPTRLIDFEKE-Y---VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAE 232 (430)
T ss_dssp EEEEEEETTTT-E---EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEE
T ss_pred CcEEEEECCCC-E---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEE
Confidence 67778888765 2 22333355678899999999966666542 2 23444433 2222 23322 23457889
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 688 FSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 688 fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
++| ++.++++-..++.|+.||... +.....+ .+.......|+|+|++++++++-...+.|.++|...
T Consensus 233 vdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 233 THPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 999 565555555788999999986 3321222 122245788999999987777777788999988753
No 263
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.87 E-value=0.0012 Score=76.25 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=119.6
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceeEEEccC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 003106 649 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRF-S-PSMPRLATSS------------------FDKTVRV 706 (847)
Q Consensus 649 dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~f-s-p~~~~Lasgs------------------~Dg~V~i 706 (847)
||++|+.+.. +..|.+.|+++.++...+.-- ...+..++| + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887766 456999999999988855432 345889998 5 9999998884 3568999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-------------------------------------CcEE
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------------------------------GEIR 749 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-------------------------------------g~V~ 749 (847)
+|..+ .+.+..+.--. ....++++|+|+++++++..+ +.|.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99998 56565554222 456688999999888776443 1366
Q ss_pred EEECCC--Cce-EEEEeeCCceE-EEEEecCCCEEEEEcCCCcEEEEcCCcccc----eeeecccccCCCCccccccccc
Q 003106 750 YWSINN--GSC-TRVFKVESFCC-WCVNAMNRPCLWDKLDAGDIQISDSLFINA----NIFCGLGWYGSDEIPAPSWKVS 821 (847)
Q Consensus 750 iWD~~~--~~~-~~~~~~~~~~v-~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~w~~~ 821 (847)
|.|.++ ++. +..+....... ..++.++...+.+......+.++|...... .+.........-.+-...|.+.
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 666665 433 34444332221 122223333444555667788888553210 0000000111112233456666
Q ss_pred cccCCCcEEEEEeCCCeEEEEEcc
Q 003106 822 CRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.+ ++..+++.--|+.|.+|++.
T Consensus 338 F~~-dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 338 FDG-RGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp ECT-TSEEEEEETTTTEEEEEEHH
T ss_pred ECC-CCeEEEEEecCCcEEEEEhh
Confidence 666 45667778899999999974
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.87 E-value=0.00054 Score=71.02 Aligned_cols=141 Identities=11% Similarity=0.156 Sum_probs=96.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+++|+.++.... .+.-. ..+....+..+++.|+... .++.+.+||.++++.+.++...... ..+ +++++
T Consensus 65 S~v~~vD~~Tgkv~~---~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~ 137 (262)
T 3nol_A 65 SSIRKVDIESGKTLQ---QIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL--THNDQ 137 (262)
T ss_dssp EEEEEECTTTCCEEE---EEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE--EECSS
T ss_pred ceEEEEECCCCcEEE---EEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE--ecCCC
Confidence 478999999884333 33222 2333333333455666555 4889999999999999998743321 233 35677
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEeccC--C---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMGH--S---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
.|+.+..+++|.++|..+ ...+.++... . ..++.+.|. +| .+++..-.++.|.+.|.++++++..+...
T Consensus 138 ~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 138 YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 787777788899999998 5666655431 1 345568887 55 57767767889999999999999988753
No 265
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.82 E-value=5.3e-05 Score=83.44 Aligned_cols=92 Identities=10% Similarity=-0.108 Sum_probs=74.3
Q ss_pred cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceEEEeccC-------C
Q 003106 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S 723 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~~~~~~~~~~~~h-------~ 723 (847)
+|.|+|.++++.+.++.....+ .+.|+||+++|+++. .+++|.+||+.+ .+.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence 8889999999999999765555 799999999998886 378899999999 6777777533 1
Q ss_pred CCeEEEEEecCCCeEEEEEeC-CCcEEE--EECCC
Q 003106 724 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~g~~ll~s~s~-Dg~V~i--WD~~~ 755 (847)
.....+.|+|||++++++... +..|.+ +|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 345679999999988866644 467888 99977
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.81 E-value=0.004 Score=66.93 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=116.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+.... ..+...-.....+++.+.+ +++++-...+.|.+++++.......+...-.....|+++|.
T Consensus 55 ~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 55 SEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp TTTEEEEEETTSSSCCC--EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred CCCcEEEEEccCCCceE--EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 34667777776542111 1122223456688998744 45555556789999998754433333344456789999998
Q ss_pred CCEEEEEeC--CCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSF--DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+..|+.+.. .+.|...+++. .....+ ...-.....|+|++++.+++++-+..+.|..+|+........+......
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 210 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH 210 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC
T ss_pred CCEEEEEecCCCCEEEEEEcCC--CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC
Confidence 777766663 57788888764 222332 2233457899999988888877777889999999754433333333344
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
...++.+.+..+|+....+.|..++..
T Consensus 211 P~glav~~~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 211 PFALTLFEDILYWTDWSTHSILACNKY 237 (318)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ceEEEEeCCEEEEEecCCCeEEEEECC
Confidence 566666777888998888888888753
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.81 E-value=0.0005 Score=71.30 Aligned_cols=144 Identities=7% Similarity=-0.051 Sum_probs=98.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.++.|+++|+.++.....+ +... ..-..+++.. +++.+..-.++.|.+||.++++.+.++..... -+.++ ++
T Consensus 72 G~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~D 144 (268)
T 3nok_A 72 GHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YW 144 (268)
T ss_dssp TTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EE
T ss_pred CCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cC
Confidence 34455899999988554444 3321 1122355432 24444445688999999999999999874322 23444 46
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEecc--CC---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMG--HS---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.|+.+..+++|.++|..+ .+.+.++.- +. ..++.+.|. +| .+++..-.++.|.+.|.++++++..+...
T Consensus 145 g~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 145 NGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp TTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred CCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 78888888899999999998 566665542 11 245778887 55 57767667889999999999999888743
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.80 E-value=0.0019 Score=69.22 Aligned_cols=173 Identities=8% Similarity=0.004 Sum_probs=103.3
Q ss_pred cEEEEeccCCceeeEeEEee-c-CCCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCceeEE
Q 003106 616 GGRGMDVSQGFSFKEANSVR-A-STSKVICCHFSS-DGKLLATGGH-----------------DKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~fsp-dg~~Lasgs~-----------------Dg~V~vwd~~~~~~~~~ 675 (847)
.+.++|..++ ..+.+.... + ......++++.+ +|++.++-.. ++.|..||.++++....
T Consensus 102 ~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 102 HLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 3667776544 222222111 1 123578999999 9987776533 36788899877665333
Q ss_pred EccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeC---------
Q 003106 676 LEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------- 744 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--------- 744 (847)
.. .-.....|+|+++++.|+.+ ..++.|.+||+.... .....+....+ ...|+++++|. ++++...
T Consensus 181 ~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 181 LK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGR 257 (322)
T ss_dssp EE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSC
T ss_pred cc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCC
Confidence 22 22345689999999977666 456899999987521 11222221223 78899999987 5545443
Q ss_pred -CCcEEEEECCCCceEEEEeeCC----ceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 745 -DGEIRYWSINNGSCTRVFKVES----FCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 745 -Dg~V~iWD~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
.+.|.++|.. ++.+..+.... ..+.++... ...+|.+. ..+.|.+++.
T Consensus 258 ~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 258 VDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC
T ss_pred CccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEec
Confidence 4668888874 77777776442 234444433 34565554 4455666653
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.78 E-value=0.0057 Score=68.02 Aligned_cols=181 Identities=8% Similarity=0.003 Sum_probs=116.4
Q ss_pred CCCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
..+.|..+++...... .....+.........|++... ++++++-...+.|.+.+++.......+...-.....|+++|
T Consensus 132 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 132 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 3456777776542111 112223334456789999984 44555555678899999886554444444445688999999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--C
Q 003106 691 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--S 766 (847)
Q Consensus 691 ~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~ 766 (847)
.+.+|+.... .+.|...+++. ..........-.....|+|++++.+|+++-...+.|..+|+........+... -
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred ccCeEEEEeCCCCCEEEEEeCCC-CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 8777766653 36788888874 22223333334568899999988888777667789999999765443333321 2
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
.....++.+.+..+|+....+.|..++.
T Consensus 291 ~~P~gl~v~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 291 AHPFSLAVFEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp SSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred CCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence 3345666677778888888888888873
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.76 E-value=0.0073 Score=67.89 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=82.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCce-eEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KK-AVLWHTDTLKS-KTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~-V~vwd~~~~~~-~~~l~~h~~~I~~v~fs 689 (847)
+.|+.+|..++ .+..+........+|+|+++|+++++.... .. +..++...+.. ...+. .-.....++++
T Consensus 162 ~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd 236 (433)
T 4hw6_A 162 DAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVH 236 (433)
T ss_dssp SCEEEEETTTT----EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEEC
T ss_pred CCEEEEECCCC----EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEe
Confidence 77888888766 223333355678999999999944444321 12 33333322211 11222 23445678999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCCceEEEe-c-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 690 P-SMPRLATSSFDKTVRVWDADNPGYSLRTF-M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 690 p-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+ ++.++++-..++.|+.+|..+ +.....+ . +.......|+|+|++++++++-...+.|+.+|+.
T Consensus 237 ~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 237 PQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9 565555555678899999986 4432222 2 2223345799999998777777778899998875
No 271
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.0019 Score=69.68 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC----CC---EEEEEe-C--CCcEEEEECCCCCceEEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSS-F--DKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~----~~---~Lasgs-~--Dg~V~iWD~~~~~~~~~~ 718 (847)
...+++....++-|.|||+ .++.+..+.. +.++.|++.|+ ++ ++++.. . +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456676677889999999 7888888854 56777777763 22 233333 3 578999988522233555
Q ss_pred ecc------CC-CCeEEEEE--ecC-CCeEEEEEeCCCcEEEEECC-------CCceEEEEeeCCceEEEEEecCCCEEE
Q 003106 719 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 719 ~~~------h~-~~V~sl~f--sp~-g~~ll~s~s~Dg~V~iWD~~-------~~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
+.. .. ..++.+|+ ++. +..+++....+|.+..|++. +.+.++.|......-.|+.-.....||
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 522 12 56777888 664 44456677788999999983 346778888777666777766778899
Q ss_pred EEcCCCcEEEEcCC
Q 003106 782 DKLDAGDIQISDSL 795 (847)
Q Consensus 782 ~~~~~g~i~i~d~~ 795 (847)
.+.++..|..++..
T Consensus 196 v~eEd~GIw~~da~ 209 (355)
T 3amr_A 196 IAEEDEAIWKFSAE 209 (355)
T ss_dssp EEETTTEEEEEECS
T ss_pred EecccceEEEEeCC
Confidence 98888767666633
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.72 E-value=0.0097 Score=69.67 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEccCC----------CCeEEEEEc-CCC---
Q 003106 643 CCHFSSDGKLLATGGHD----------------KKAVLWHTDTLKSKTNLEEHS----------SLITDVRFS-PSM--- 692 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~D----------------g~V~vwd~~~~~~~~~l~~h~----------~~I~~v~fs-p~~--- 692 (847)
.+++.++..+|+.+..+ +.|..+|.++++.+..+.... ..|. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35666777788877665 379999999999988776422 1122 2332 467
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCC-------------CCe--------------------------EEEEEec
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-------------ASV--------------------------MSLDFHP 733 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-------------~~V--------------------------~sl~fsp 733 (847)
+.|+.++.+|.|+++|.++ ++.+....... ..| ..++|+|
T Consensus 324 ~~v~~~~~~G~l~~lD~~t-G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTD-GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEECCCcEEEEEECCC-CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 4677788999999999998 66554443110 001 2356677
Q ss_pred CCCeEEEEE--------------------------------e------CCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 734 NKDDLICSC--------------------------------D------GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 734 ~g~~ll~s~--------------------------------s------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
+...+++.. + .+|.|..||+++++.+-.+.............
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t 482 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT 482 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence 655433211 1 34789999999999877665432211111123
Q ss_pred CCCEEEEEcCCCcEEEEcCCcc
Q 003106 776 NRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
....++.++.++.++.+|....
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTC
T ss_pred cCCEEEEECCCCeEEEEECCCC
Confidence 4566777889999999997643
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.70 E-value=0.0028 Score=65.05 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=95.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
...|+++|+.++.. +..+.-.. .+....+..+++.|+.. -.++.+.+||.++++.+.++...... ..|+ +++
T Consensus 42 ~S~v~~vD~~tgkv---~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg 114 (243)
T 3mbr_X 42 RSSVRKVDLETGRI---LQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDD 114 (243)
T ss_dssp SCEEEEEETTTCCE---EEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECS
T ss_pred CceEEEEECCCCCE---EEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCC
Confidence 45789999998833 33332222 22222222334455444 46889999999999999998743322 3444 567
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
..|+.+..+++|.++|..+ ...+.++.-.. ..++.+.|. +| .+++..-.+..|.+.|.++++++..+..
T Consensus 115 ~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 115 SHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp SCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred CEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 7787777789999999998 56666654321 346677776 44 4776665678999999999999998874
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.69 E-value=0.0059 Score=65.64 Aligned_cols=217 Identities=10% Similarity=0.005 Sum_probs=123.8
Q ss_pred CcEEEEeccCCc-eeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcee-EEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~-~~l~~h~~~I~~v~fsp~ 691 (847)
..|+.+|+.... ....+ + .....+.+++|.+.+..| ++-...+.|..++++..... ..+...-.....|++.+.
T Consensus 13 ~~I~~i~l~~~~~~~~~~--~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENATIV--V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCCEEE--E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEEEEE--e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 456677776542 11111 1 112346789999855444 55456788999998865322 223233345678999976
Q ss_pred CCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+ ...+.|.+++++. ......+.........|+++|.+..++++-. ..+.|..+++........+...-...
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 6555544 4678899999875 3322233344566889999998776765553 35788888887443333333333344
Q ss_pred EEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..++++ ....+|+-...+.|..++........+..... .....++. ..+.++++-...+.|..++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-------~~P~glav--~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-------PHPFALTL--FEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCC-------SCEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCC-------CCceEEEE--eCCEEEEEecCCCeEEEEEC
Confidence 555555 45566777777888888754333222221110 01111111 13456666666677766664
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.69 E-value=0.024 Score=60.94 Aligned_cols=206 Identities=14% Similarity=0.062 Sum_probs=109.4
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+.+++.+.....+.+.+.+|.+.++++.++++ .++.|.. ..+.++....+ ..+...+.+++|.+++.+++++...+.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 55666654433344568888888777666655 4665432 22334333322 345567899999999887766654444
Q ss_pred EEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~ 778 (847)
++-+|-. +..... -......+..+.+.+++. ++ .++.+|.|++++...++.-..+... ...+.++.+....
T Consensus 186 ~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 186 YSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEECTT--CSSCEEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEeCCC--CCceeECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 4444431 111111 234456788999999876 44 4455788877753323322222211 2246666666666
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+|....++.+......-. ........ .......+.+.+. +...+++++.+|.|..++
T Consensus 262 ~~~~~g~~g~i~~S~DgG~---tW~~~~~~--~~~~~~~~~v~~~--~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAGGAGALLCSQDGGQ---TWQQDVDV--KKVPSNFYKILFF--SPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEESTTCEEEESSTTS---SCEECGGG--TTSSSCCCEEEEE--ETTEEEEECSTTEEEEEC
T ss_pred EEEEEeCCCeEEEeCCCCc---ccEEcCcc--CCCCCCeEEEEEE--CCCceEEEcCCceEEEEc
Confidence 7777777776644321111 11111100 0001112222222 244577778899887765
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.65 E-value=0.011 Score=71.44 Aligned_cols=180 Identities=8% Similarity=-0.003 Sum_probs=115.0
Q ss_pred CCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
.+.|+.+++...... .....+.........|++...++.|+ +-...+.|.+.+++.......+...-.....|+++|.
T Consensus 445 ~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 445 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 524 (791)
T ss_dssp TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecC
Confidence 456777776542110 11222333445677899988775555 4456789999999855443334344456899999998
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--Cc
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SF 767 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~ 767 (847)
+.+|+.+.. + +.|.+.+++. ......+...-.....|++++.+.+|+++-...+.|.++|+........+... -.
T Consensus 525 ~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~ 603 (791)
T 3m0c_C 525 HGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 603 (791)
T ss_dssp TTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred CCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccC
Confidence 777776654 2 6788888874 33333333334578999999888878767666788999999765544444432 22
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
....++......+|+-...+.|...+.
T Consensus 604 ~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 604 HPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 345666667777888888888887764
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.64 E-value=0.012 Score=62.35 Aligned_cols=162 Identities=9% Similarity=-0.027 Sum_probs=94.7
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~i 706 (847)
+.+..+... ....+++|+++++++++-..++.|..||.+. +....+. ....+.+|+|.++++++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 444455432 5678999999999777776889999999875 3333332 335689999999998665554332 4666
Q ss_pred EECCCCCceEEEec-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEEee---------CCceEEEEEec
Q 003106 707 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKV---------ESFCCWCVNAM 775 (847)
Q Consensus 707 WD~~~~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~~~---------~~~~v~~~~~~ 775 (847)
+|..+ +....... ........+++.++ ..++++...++.|.++|..+++. +..... .-.....+..+
T Consensus 100 ~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 100 LVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp EECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 77665 43322221 12233455555544 44565555688999999876532 211110 11123334333
Q ss_pred CCCEEEEEcCCCcEEEEcCC
Q 003106 776 NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~ 795 (847)
....+++....+.|..++..
T Consensus 178 g~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEEeCCCCEEEEEEeC
Confidence 43344455566678777743
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.63 E-value=0.00072 Score=80.46 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=81.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceeEEEccC-----CCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HD-----KKAVLWHTDTLKSKTNLEEH-----SSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D-----g~V~vwd~~~~~~~~~l~~h-----~~~ 682 (847)
+..+.+||..+. .+..+..+...... .++++.+++++++.|+ .+ ..+.+||..+.+-.. +... ...
T Consensus 264 ~~~v~~yd~~t~-~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~ 340 (656)
T 1k3i_A 264 AKKTSLYDSSSD-SWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTA 340 (656)
T ss_dssp TTCEEEEEGGGT-EEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCC
T ss_pred CCceEEecCcCC-ceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccc
Confidence 347999999887 66666544332222 3455667999999998 44 579999998765432 2100 000
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceEEEeccCC---------CCeEEEEEecCCCeEEEEEeC
Q 003106 683 ITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHS---------ASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~D---------g~V~iWD~~~~~~~~~~~~~h~---------~~V~sl~fsp~g~~ll~s~s~ 744 (847)
-....+..++..++.|+.| ..|.+||..+.. .......+. ..-.++.|...+..+++.|+.
T Consensus 341 ~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 0001122344444555444 457889988733 222221111 123456665545567778775
Q ss_pred CC-----------cEEEEECCCCceEEE
Q 003106 745 DG-----------EIRYWSINNGSCTRV 761 (847)
Q Consensus 745 Dg-----------~V~iWD~~~~~~~~~ 761 (847)
++ .|.+||..+......
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 42 688889887765544
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.59 E-value=0.0072 Score=70.49 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=90.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC--CCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST--SKVIC-CHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~--~~V~~-l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..++.+..+|..++...-.. .+..+. ..+.+ ..+. ++ .|++++. ++.|+.+|.++++.+.++......
T Consensus 122 ~~dg~l~alD~~tG~~~W~~-~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 198 (571)
T 2ad6_A 122 QANGHLLALDAKTGKINWEV-EVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD 198 (571)
T ss_dssp CTTSEEEEEETTTCCEEEEE-ECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred eCCCEEEEEECCCCCEEEEe-cCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence 34788999999888322211 111110 01211 1111 44 5555554 799999999999998876532110
Q ss_pred -------------------------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEE
Q 003106 683 -------------------------------------I-TDVRFSPSMPRLATSSFD----------------KTVRVWD 708 (847)
Q Consensus 683 -------------------------------------I-~~v~fsp~~~~Lasgs~D----------------g~V~iWD 708 (847)
+ ..+++.++...|+.+..+ +.|..+|
T Consensus 199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald 278 (571)
T 2ad6_A 199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD 278 (571)
T ss_dssp HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE
T ss_pred cccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe
Confidence 0 235677776777766532 3599999
Q ss_pred CCCCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 709 ADNPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 709 ~~~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.++ ++.+-.+.. |. ....-+....+|+ .+++.++.+|.|.++|.++|+.+..+..
T Consensus 279 ~~t-G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 279 LDT-GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cCC-CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 998 666655532 21 1111123334664 4666888899999999999998877654
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.55 E-value=0.06 Score=55.66 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=84.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 633 SVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -......|++.+++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445556799999999776555 46778899999988 888887742 23567899999888766666678899999987
Q ss_pred CCCc--eEEEec------cCCCCeEEEEEecCCCeEEEEEeCCC-cEEEEE
Q 003106 711 NPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWS 752 (847)
Q Consensus 711 ~~~~--~~~~~~------~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD 752 (847)
..+. .+.... ........|+|+|.+.++++++..+. .|..|+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 6443 222221 12345689999999988887766554 455555
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.49 E-value=0.023 Score=66.30 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=97.2
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeEEEcc--CC--------CCeEEEEE
Q 003106 643 CCHFSSDGKLLATGGH--------------------D----KKAVLWHTDTLKSKTNLEE--HS--------SLITDVRF 688 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~--------------------D----g~V~vwd~~~~~~~~~l~~--h~--------~~I~~v~f 688 (847)
.+++.++..+|+.+.. | +.|..+|+++++.+..+.. |. .+|. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3566777777777663 2 5899999999999988753 32 1221 222
Q ss_pred c-CCCC---EEEEEeCCCcEEEEECCCCCceEEEeccCC------------CC---------------------------
Q 003106 689 S-PSMP---RLATSSFDKTVRVWDADNPGYSLRTFMGHS------------AS--------------------------- 725 (847)
Q Consensus 689 s-p~~~---~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~------------~~--------------------------- 725 (847)
. .+|+ .|+.++.+|.|+++|.++ ++.+..+.... ..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCC-CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 2 4664 678899999999999998 66554443221 00
Q ss_pred ------eEEEEEecCCCeEEEEEe--------------------------------CCCcEEEEECCCCceEEEEeeCCc
Q 003106 726 ------VMSLDFHPNKDDLICSCD--------------------------------GDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 726 ------V~sl~fsp~g~~ll~s~s--------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
-..++|+|+...+++... .+|.|..||+++++.+-.+.....
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~ 487 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP 487 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence 013456666554443221 368899999999998776664432
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
............++.++.++.++.+|....
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 211111224567778899999999997643
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.46 E-value=0.00069 Score=81.16 Aligned_cols=218 Identities=10% Similarity=-0.019 Sum_probs=118.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fs 689 (847)
..|++.++.+... . .+......+..|+|.+++..|+.+. ..+.|+++++.. ......+...-.....|++.
T Consensus 386 ~~I~~id~~~~~~---~-~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 386 HEVRKMTLDRSEY---T-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TC-CEECTTSCCE---E-CCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred cceEEEeCCCCcc---e-eeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 4667777765421 1 1112234567899998776666654 467899999875 22222222222335678888
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+ ...+.|.++|+.. ......+.........|+++|.+.+|+++-... +.|.++++........+...-.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred eeCCcEEEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 655555444 4578899999875 333333332334567899999877666554333 6888888764332222222222
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....++++ ....+|+-...+.|.+++........+...... ... ...+.. ..+.++++....+.|..++.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~~~----P~glav--d~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAH----PFSLAV--FEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS-CSS----CCCCEE--ETTEEEEECSTTTCEEEEET
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc-CCC----ceEeEE--ECCEEEEEeCCCCeEEEEEc
Confidence 33344444 456777777778888888653332222221100 000 011111 12456666667777877764
No 283
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.40 E-value=0.0082 Score=70.30 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=90.6
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC--CCEEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEccCCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST--SKVIC-CHFSSDGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~--~~V~~-l~fspdg~~Lasgs------~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..++.+..+|..+|...-... +..+. ..+.+ ..+. ++ .|++++ .++.|+.+|.++++.+..+......
T Consensus 128 t~dg~l~AlDa~TG~~~W~~~-~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~ 204 (599)
T 1w6s_A 128 QLDGNVAALNAETGETVWKVE-NSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD 204 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEE-CCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred cCCCEEEEEECCCCCEEEeec-CCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCc
Confidence 357788889998883322111 11110 11211 1111 44 455554 3899999999999998776532211
Q ss_pred -------------------------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEE
Q 003106 683 -------------------------------------I-TDVRFSPSMPRLATSSFD----------------KTVRVWD 708 (847)
Q Consensus 683 -------------------------------------I-~~v~fsp~~~~Lasgs~D----------------g~V~iWD 708 (847)
+ ..+++.++...|+.+..+ +.|..+|
T Consensus 205 ~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald 284 (599)
T 1w6s_A 205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD 284 (599)
T ss_dssp HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE
T ss_pred cccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe
Confidence 0 135666777788877765 3799999
Q ss_pred CCCCCceEEEecc--CCC-------CeEEEEEe-cCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 709 ADNPGYSLRTFMG--HSA-------SVMSLDFH-PNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 709 ~~~~~~~~~~~~~--h~~-------~V~sl~fs-p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.++ ++.+-.+.. |.. ...-+... .+|+ .+++.++.+|.|.++|.++|+.+..+.
T Consensus 285 ~~T-G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 285 ADT-GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC-CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 998 666655543 211 11112322 4563 467788899999999999999887665
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.40 E-value=0.0011 Score=79.48 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=108.0
Q ss_pred CCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 612 PRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
...+.|..+++..... ......+.........|++.+. ++++++-...+.|.+++++.......+.........|+++
T Consensus 425 ~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavD 504 (699)
T 1n7d_A 425 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504 (699)
T ss_dssp TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECC
T ss_pred cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEc
Confidence 3456777887764100 0111111111223456788754 4455554567889999988554433333333456789999
Q ss_pred CCCCEEEEEeC-C-CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-
Q 003106 690 PSMPRLATSSF-D-KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE- 765 (847)
Q Consensus 690 p~~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~- 765 (847)
|.+.+|+.+.. . +.|.++++.. .....+ ...-.....|+|++++.+|+++-...+.|.++|+........+...
T Consensus 505 p~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 582 (699)
T 1n7d_A 505 PVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 582 (699)
T ss_dssp SSSSCCEECCCSSSCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS
T ss_pred cCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC
Confidence 97666665543 2 6788887764 222222 2223456789999988888877777889999999754333333211
Q ss_pred -CceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 766 -SFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 766 -~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
......++++....+|+....+.|..++..
T Consensus 583 ~~~~P~glavd~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 583 RLAHPFSLAVFEDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred cCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence 122334445566778888788888888743
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.36 E-value=0.056 Score=63.65 Aligned_cols=177 Identities=8% Similarity=-0.027 Sum_probs=115.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++... ..+. .+.........|++...+..| ++-...+.|.+.+++.......+...-....+|+++|.
T Consensus 57 ~~~~I~r~~~~g~-~~~~--v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 57 SLKTISRAFMNGS-ALEH--VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp TTTEEEEEETTSC-SCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT
T ss_pred CCCeEEEEECCCC-CcEE--EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC
Confidence 4567777777654 1121 122223456788998765555 44455678999998754433333334456789999997
Q ss_pred CCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
...|+.+.. .+.|...+++. ..+..+...-.....|++++++.+|+++-...+.|..+|+..... ..+.......
T Consensus 134 ~G~lY~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P 210 (628)
T 4a0p_A 134 EGFMYWTEWGGKPKIDRAAMDG--SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHP 210 (628)
T ss_dssp TTEEEEEECSSSCEEEEEETTS--CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCE
T ss_pred CCeEEEeCCCCCCEEEEEeCCC--CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCc
Confidence 667766653 46777777764 223333334567889999998888887777788999999976544 3444444445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+.+..+|+-...+.|...+..
T Consensus 211 ~glav~~~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 211 FGLTQYQDYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCEEEEecCCCCEEEEEECC
Confidence 56666677777888778888887743
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.29 E-value=0.031 Score=57.84 Aligned_cols=154 Identities=7% Similarity=0.042 Sum_probs=101.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEc------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~l~------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
...-.|++.+++.++++.-.++.|.++++..... +..+. ........|+|+|.++.|+++.......||.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4577888888888777766778999998875432 22221 12345689999999988877776555555554
Q ss_pred CC--CCceEEEec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---------eEEE
Q 003106 710 DN--PGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF---------CCWC 771 (847)
Q Consensus 710 ~~--~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~---------~v~~ 771 (847)
+. ....+..+. .+...+.+|+|+|...++++.....+.|.++|.. |+.+..+.-... ..-.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 31 111222221 1334578999999988888888888999999977 556666554321 3355
Q ss_pred EEecCCCEEEEEcCCCcEEEEc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d 793 (847)
++++....+|..++...+++|.
T Consensus 229 ia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 229 VAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEECTTCCEEEEETTTEEEEEE
T ss_pred eEECCCCCEEEEcCCceEEEEE
Confidence 6666666677777776666654
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.28 E-value=0.0034 Score=74.55 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=64.1
Q ss_pred cEEEEeccCCceeeEeEEeec-CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCC-CeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRA-STSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~-~I~~v~fsp~~ 692 (847)
.+.+||..++ .++.+..+.. +.....++++..+++++++|+. +..|.+||..+.+-...-..+.. .-.++++.+++
T Consensus 220 ~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg 298 (656)
T 1k3i_A 220 LTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG 298 (656)
T ss_dssp EEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred EEEEEeCCCC-cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC
Confidence 5778998887 5666555533 3334446788889999999984 56899999886644322111111 12345566789
Q ss_pred CEEEEEe-CC-----CcEEEEECCC
Q 003106 693 PRLATSS-FD-----KTVRVWDADN 711 (847)
Q Consensus 693 ~~Lasgs-~D-----g~V~iWD~~~ 711 (847)
+.++.|+ .+ ..+.+||..+
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTT
T ss_pred eEEEEeCcccCCcccccceEeCCCC
Confidence 9888888 44 5699999987
No 288
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.22 E-value=0.067 Score=62.88 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=107.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~ 691 (847)
...|++.|+.... .....+......+..|+|++.+..|+.+. ..+.|..++++.... ...+...-.....|++++.
T Consensus 17 ~~~I~~i~~~~~~--~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 17 RRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp SSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred cccEEEEeCCCCc--ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 3456777766431 11222223345678999999776666555 467899999875432 2333333356889999997
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+. .++.|.+.|++. ......+...-.....|+++|.+..++++--. .+.|...++............-...
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred CCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence 66665554 578999999985 33222333444567889999987767755422 4577777776443333333333445
Q ss_pred EEEEec--CCCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAM--NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~--~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+ ....+|+-...+.|..++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 556555 45667777777888888754
No 289
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.21 E-value=0.011 Score=69.11 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=91.7
Q ss_pred CcEEEEeccCCceeeEeEEee--cCC--------CCEEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCceeEEEccCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--AST--------SKVICCHFS-SDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~h~--------~~V~~l~fs-pdg~---~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
+.+..+|..++. .+..+. .|. ..|. +... .+|+ .|+.++.+|.|+++|.++++.+..+....
T Consensus 291 ~~v~AlD~~TG~---~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 291 SGQVGVDPSSGE---VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp SEEEEECTTTCC---EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred ceEEEEeCCCCC---EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 578888888873 333332 232 2222 2222 4674 78889999999999999999887665331
Q ss_pred C--Ce-------------------------------------------EEEEEcCCCCEEEEEe----------------
Q 003106 681 S--LI-------------------------------------------TDVRFSPSMPRLATSS---------------- 699 (847)
Q Consensus 681 ~--~I-------------------------------------------~~v~fsp~~~~Lasgs---------------- 699 (847)
. .. ..++|+|+..+|++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 0 00 1345666655555432
Q ss_pred -----------------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 700 -----------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 700 -----------------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+|.|..||+.+ ++.+-.+.... .+..-.....+. +++.++.||.|+.||.++|+.+-.+
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCceeccceeecCCCCCCcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEe
Confidence 268899999998 56554443222 222111122344 4557889999999999999999888
Q ss_pred eeCCc
Q 003106 763 KVESF 767 (847)
Q Consensus 763 ~~~~~ 767 (847)
+....
T Consensus 524 ~~~~g 528 (582)
T 1flg_A 524 QTGSG 528 (582)
T ss_dssp ECSSC
T ss_pred cCCCC
Confidence 86543
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.16 E-value=0.054 Score=60.73 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=90.7
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC----c-EEEEECCC
Q 003106 639 SKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK----T-VRVWDADN 711 (847)
Q Consensus 639 ~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg----~-V~iWD~~~ 711 (847)
....+|+|+++ +..|+.+...+.|+.+|..+++....+ .......+|+|+++++ |+.+...+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34668999984 455666554489999999877665443 4445689999999999 55554322 2 33333332
Q ss_pred CCce-EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeC-CceEEEEEecCCC-EEE-EEcCC
Q 003106 712 PGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVE-SFCCWCVNAMNRP-CLW-DKLDA 786 (847)
Q Consensus 712 ~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~l~-~~~~~ 786 (847)
... ...+. .......++++++..+++++-..++.|+.+|..++.....+ ... ......++++... .+| +....
T Consensus 217 -~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 -GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp -TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred -Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 221 11221 23446678999954556656666789999999888763333 222 1222345555433 244 44556
Q ss_pred CcEEEEcC
Q 003106 787 GDIQISDS 794 (847)
Q Consensus 787 g~i~i~d~ 794 (847)
+.|..++.
T Consensus 295 ~~I~~~~~ 302 (433)
T 4hw6_A 295 HCIYRVDY 302 (433)
T ss_dssp TEEEEEEB
T ss_pred CEEEEEeC
Confidence 67877663
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=0.094 Score=59.48 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=84.2
Q ss_pred CcEEEEeccCCceeeEeEEe-ecCCCCEEEEEE-------cCCCCEEEEEeCCC-------cEEEEECCC-Ccee-----
Q 003106 615 AGGRGMDVSQGFSFKEANSV-RASTSKVICCHF-------SSDGKLLATGGHDK-------KAVLWHTDT-LKSK----- 673 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~f-------spdg~~Lasgs~Dg-------~V~vwd~~~-~~~~----- 673 (847)
+.|++.|+..+ .+..+... .........|+| ++++++|+++...+ .|.+++... +...
T Consensus 162 ~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~ 240 (496)
T 3kya_A 162 KAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI 240 (496)
T ss_dssp EEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE
T ss_pred CeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc
Confidence 45777887776 33322221 112346899999 99999777766554 266666443 2221
Q ss_pred EEEccCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC-------CCCce-----------EEE-e-ccCCCCeEEEEEe
Q 003106 674 TNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDAD-------NPGYS-----------LRT-F-MGHSASVMSLDFH 732 (847)
Q Consensus 674 ~~l~~h~~~I~~v~fsp~~~~La-sgs~Dg~V~iWD~~-------~~~~~-----------~~~-~-~~h~~~V~sl~fs 732 (847)
..+... .....++++|++..|+ +-..++.|..+|+. + +.. +.. + .+.....+.|+|+
T Consensus 241 ~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~ 318 (496)
T 3kya_A 241 QLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH 318 (496)
T ss_dssp EEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC
T ss_pred eeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-ceeecccccccccccceeEecCCCCCceEEEEc
Confidence 222221 2346788999655554 55568889999987 4 222 112 2 1233456899999
Q ss_pred cCCCeEEEEEeCCCcEEEEECC
Q 003106 733 PNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 733 p~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
|+|..++++-...+.|+.+|..
T Consensus 319 p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 319 PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecC
Confidence 9998766666677889996653
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.10 E-value=0.14 Score=60.22 Aligned_cols=179 Identities=12% Similarity=0.002 Sum_probs=112.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
...|+..|+.+.. ......+ ..-..+..|+|++++..|+.+ ..++.|+.++++.......+.........|++.+.+
T Consensus 14 ~~~I~~i~l~~~~-~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 14 RADIRRISLETNN-NNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp TTEEEEEESSCTT-CEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred CCcEEEEECCCCC-cceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 3467777776542 1211112 223468899999966665544 567899999988654444444333457789998876
Q ss_pred CEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 693 PRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 693 ~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
..|+.+. ..+.|.+.+++. ......+...-.....|+++|....++++- +..+.|...++........+. .-....
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~ 169 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRAN 169 (628)
T ss_dssp TEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEE
T ss_pred CEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcc
Confidence 6665554 577899999875 332222324445688999999767676554 225678888887554333332 334455
Q ss_pred EEEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 771 CVNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 771 ~~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
.++++ ....+|+-...+.|..++...
T Consensus 170 GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 170 GLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 55554 456677777788888887543
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.09 E-value=0.16 Score=59.71 Aligned_cols=180 Identities=6% Similarity=-0.060 Sum_probs=108.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+..++...........+ ..-..+.+|+|.+.+..|+.+ ...+.|+.++++.......+...-.....|++...+.
T Consensus 326 ~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 326 TDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred cceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 35666666554211111111 123457899999855555544 4578899999885444444443345678899987666
Q ss_pred EEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 694 RLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 694 ~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+ +..+.|.+.+++. ......+...-.....|+++|....++++-.. ...|...++............-.....
T Consensus 405 ~lY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNG-TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp EEEEEETTTTEEEEEETTS-CSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred cEEEEeCCCCcEEEEeCCC-CeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCee
Confidence 56555 4578899999875 33222223344678999999986666655432 367777777644333333333344555
Q ss_pred EEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 772 VNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 772 ~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
++.+ ....+|+-...+.|..++...
T Consensus 484 lalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 484 LALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred eEEcccCCEEEEEECCCCEEEEEecCC
Confidence 5554 456677777778888887543
No 294
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.05 E-value=0.045 Score=57.93 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=88.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce
Q 003106 639 SKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
..+.+++|.++|+++++..... .|..+|..+++....... .......+++.+++..+++-..++.|.++|.......
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4588999999999766654432 477778777765433321 2233455666555544444446889999998652111
Q ss_pred EEEec---------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-Cce--EEEEeeCCceEEEEEecCCCEEEEE
Q 003106 716 LRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC--TRVFKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 716 ~~~~~---------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~--~~~~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
+.... +.-.....| ++++++++++-...+.|.+||+.. ++. ...+... .....++.+....+|..
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEE
Confidence 21111 111235556 788888887888889999999875 321 1222111 12223444444456655
Q ss_pred c-CCCcEEEEcCC
Q 003106 784 L-DAGDIQISDSL 795 (847)
Q Consensus 784 ~-~~g~i~i~d~~ 795 (847)
. ..+.|.+++..
T Consensus 229 ~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 229 THIYNSVVRIAPD 241 (306)
T ss_dssp CBTTCCEEEECTT
T ss_pred eCCCCeEEEECCC
Confidence 4 35678877743
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.018 Score=64.57 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=94.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCC
Q 003106 640 KVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK----TVRVWDADNPG 713 (847)
Q Consensus 640 ~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-Dg----~V~iWD~~~~~ 713 (847)
....|+|+| ++..|+.+...+.|+++|++.+...... ........|+|++++++|+.+.. ++ .|.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 4566666665588999999876654433 34556889999999997766654 22 34444433211
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCCC--EEEEEcCCCcEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNRP--CLWDKLDAGDIQ 790 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~~--~l~~~~~~g~i~ 790 (847)
.....+. .......++++|++.+++++-..++.|..||...+.....+... ......++++... .+++....+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 12346778999955557767667889999999877653333322 2334556655433 344555666777
Q ss_pred EEcC
Q 003106 791 ISDS 794 (847)
Q Consensus 791 i~d~ 794 (847)
.++.
T Consensus 296 ~~~~ 299 (430)
T 3tc9_A 296 RSDY 299 (430)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7663
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.93 E-value=0.17 Score=53.75 Aligned_cols=211 Identities=10% Similarity=0.140 Sum_probs=131.5
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecC----CCCEEEE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRAS----TSKVICC 644 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~l 644 (847)
....++|+++-.....+ .+...|..|..-+. .--.+..|..|+++... .+.+.+..| ...|..-
T Consensus 87 ~~LQiFnletK~klks~-------~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s--~P~kvFdR~~~L~~~QIInY 157 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAH-------TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINY 157 (365)
T ss_dssp TEEEEEETTTTEEEEEE-------ECSSCEEEEEECSSSEEEEEESSEEEEEESSTTC--CCEEEEECCGGGTTCEEEEE
T ss_pred CeEEEechHHhhhhcce-------ecCCccEEEEecCCCeEEEEcCCcEEEEcccCCC--CCceeeecchhcccceEEEE
Confidence 34588888876544322 13345666544333 23346778899987632 344444443 3567788
Q ss_pred EEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEEccCCCCeEEEEEcCC---CCEEEEEeC---CCcEEEEECCC
Q 003106 645 HFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSF---DKTVRVWDADN 711 (847)
Q Consensus 645 ~fspdg~~Lasgs~-------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~---~~~Lasgs~---Dg~V~iWD~~~ 711 (847)
+.++|.++++..+- .|.+-+|.++. +.-..+++|......+.+.-+ ...|+.+.. .++++|-++..
T Consensus 158 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~ 236 (365)
T 2xzh_A 158 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 236 (365)
T ss_dssp EECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSS
T ss_pred EECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 88899998776542 36788999874 444678888766554444322 113343432 26899999865
Q ss_pred C--C------ceEEEecc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCE
Q 003106 712 P--G------YSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPC 779 (847)
Q Consensus 712 ~--~------~~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 779 (847)
. + +.+..+.. -.+-.-++..++.-. +++.-+.-|.|++||++++.|+..-+.....|...+. ....-
T Consensus 237 ~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~G 315 (365)
T 2xzh_A 237 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 315 (365)
T ss_dssp CCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTE
T ss_pred CCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCc
Confidence 3 1 11222211 244556777777755 5557778899999999999999988877777665544 34456
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
+......|.+....
T Consensus 316 i~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 316 IIGVNRKGQVLSVC 329 (365)
T ss_dssp EEEEETTCEEEEEE
T ss_pred EEEEcCCCEEEEEE
Confidence 66777777766554
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.88 E-value=0.054 Score=57.92 Aligned_cols=139 Identities=9% Similarity=0.092 Sum_probs=93.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeec----CCC--CEEEEEE---cCCCCEEEEEe-------------CCCcEEEEECC--
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRA----STS--KVICCHF---SSDGKLLATGG-------------HDKKAVLWHTD-- 668 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~----h~~--~V~~l~f---spdg~~Lasgs-------------~Dg~V~vwd~~-- 668 (847)
..++|..||...+ ...++ .+.+ ... .+..|.| .++++++++.. .+..|..||+.
T Consensus 33 ~~g~V~~~~~~~~-~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~ 110 (334)
T 2p9w_A 33 YKGRIEVYNPKTQ-SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLS 110 (334)
T ss_dssp TTTEEEEECTTTC-CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCC
T ss_pred cCCEEEEEcCCCC-eEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcC
Confidence 4567777777654 22233 3322 111 3579999 68877777543 26779999999
Q ss_pred -CCceeEEEc--cC-----------CCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCceEEEec------cCCCCeE
Q 003106 669 -TLKSKTNLE--EH-----------SSLITDVRFSPSMPRLATSSFD-KTVRVWDADNPGYSLRTFM------GHSASVM 727 (847)
Q Consensus 669 -~~~~~~~l~--~h-----------~~~I~~v~fsp~~~~Lasgs~D-g~V~iWD~~~~~~~~~~~~------~h~~~V~ 727 (847)
+++.+.... .. ...+.+|+..++|+..++++.. +.|..+|.+. ..+..+. ......+
T Consensus 111 ~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG--~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 111 ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG--KTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS--CCEEEEEECCCCSSSCCSCS
T ss_pred CCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC--CEEeeeeecCCCcccccCcc
Confidence 777765543 11 1247899999999998988887 8777777664 3333321 1122367
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 728 SLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 728 sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|+++|+|..|++.-+ +|.|..+|+++.
T Consensus 189 GIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp EEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred eEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 9999999987775555 999999999853
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.75 E-value=0.35 Score=53.30 Aligned_cols=211 Identities=11% Similarity=0.168 Sum_probs=132.9
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEEe--eecCC-CCCCCCcEEEEeccCCceeeEeEEeecC----CCCEEEE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF--LSHDD-TDPRDAGGRGMDVSQGFSFKEANSVRAS----TSKVICC 644 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~--~s~d~-t~~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~l 644 (847)
....|+|+++-.....+. +...|..| .+... .-..+..|.-|+++.. ..+++.+..| ...|..-
T Consensus 86 ~~lQiFnle~K~klks~~-------~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHT-------MTDDVTFWKWISLNTVALVTDNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp TEEEEEETTTTEEEEEEE-------CSSCCCEEEEEETTEEEEECSSEEEEEESSSS--CCCEEEEECCGGGTTCEEEEE
T ss_pred CeEEEEchHHhhhhccee-------cCCCceEEEecCCCeEEEEcCCeeEEecccCC--CCchhheecchhcccceEEEE
Confidence 344888887765443211 22334444 33332 3345678899999753 2344444444 3568888
Q ss_pred EEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC---CEEEEEeC---CCcEEEEECCC
Q 003106 645 HFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSF---DKTVRVWDADN 711 (847)
Q Consensus 645 ~fspdg~~Lasgs~-------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~---~~Lasgs~---Dg~V~iWD~~~ 711 (847)
..++|.++++..|- .|.+-+|.++. +.-..+++|......+.+.-+. ..|+.+.. .++++|-++..
T Consensus 157 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred EECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 88999998875542 46788999884 4446788887766655554322 23444544 27899999965
Q ss_pred C--C------ceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCE
Q 003106 712 P--G------YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPC 779 (847)
Q Consensus 712 ~--~------~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 779 (847)
. + +.+..+. .-.+-..++..++.-. +++..+.-|.|++||++++.|+..-+.....+...+. ....-
T Consensus 236 ~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G 314 (494)
T 1bpo_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (494)
T ss_dssp CCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred CccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCc
Confidence 3 1 1111111 1244566778887766 5557778899999999999999988877776665544 34456
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
+......|.|....
T Consensus 315 i~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 315 IIGVNRKGQVLSVC 328 (494)
T ss_dssp EEEEETTCEEEEEE
T ss_pred EEEEccCceEEEEE
Confidence 67777777766554
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.075 Score=60.32 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=93.9
Q ss_pred CEEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCceeEEEccC---CCCeEEEEE-------cCCCCEEEEEeCCC-----
Q 003106 640 KVICCHFSS-DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK----- 702 (847)
Q Consensus 640 ~V~~l~fsp-dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h---~~~I~~v~f-------sp~~~~Lasgs~Dg----- 702 (847)
....|+|+| +...|+.+.. .+.|++.|++++.+...+... ......|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 4555555544 467899998877766554332 234899999 99999777776554
Q ss_pred --cEEEEECCCCCceE-----EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-------CCce----------
Q 003106 703 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-------NGSC---------- 758 (847)
Q Consensus 703 --~V~iWD~~~~~~~~-----~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-------~~~~---------- 758 (847)
.|.+++....+... ..+.. ......++++|++.+|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26667644311111 22221 12345688999777788788788999999997 5543
Q ss_pred -EEE-EeeC-CceEEEEEecCCCE--EEEEcCCCcEEEEc
Q 003106 759 -TRV-FKVE-SFCCWCVNAMNRPC--LWDKLDAGDIQISD 793 (847)
Q Consensus 759 -~~~-~~~~-~~~v~~~~~~~~~~--l~~~~~~g~i~i~d 793 (847)
... +... ......++++.... +++-.....|+.++
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 112 2222 23345566554432 34445666777755
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.70 E-value=0.049 Score=58.75 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCcEEEEecc--CCceeeEeEEe----ecCCCCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEE
Q 003106 614 DAGGRGMDVS--QGFSFKEANSV----RASTSKVICCHF--SSD-GK-LLATGGHDKKAVLWHTD-------TLKSKTNL 676 (847)
Q Consensus 614 d~~v~vwd~~--~~~~~~~~~~l----~~h~~~V~~l~f--spd-g~-~Lasgs~Dg~V~vwd~~-------~~~~~~~l 676 (847)
+..+++|++. ++ .++.+..+ ..-...+..+|+ ++. ++ ++++...+|.+..|++. +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5779999764 33 34433221 111155666777 664 44 68888889999999883 34567777
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceEEEec-cC-CCCeEEEEE--ecCCC-eEEEEEeCCCc
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFM-GH-SASVMSLDF--HPNKD-DLICSCDGDGE 747 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----~~~~~~~~-~h-~~~V~sl~f--sp~g~-~ll~s~s~Dg~ 747 (847)
... +.+..|.+.+...+|+.+-.|..|..+|.+-. ...+..+. ++ ...+..|++ .++++ ++|+++-.+++
T Consensus 177 ~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 643 56888899998889999999877777775521 23444432 22 246888887 45555 67777767889
Q ss_pred EEEEECC-CCceEEEEeeC
Q 003106 748 IRYWSIN-NGSCTRVFKVE 765 (847)
Q Consensus 748 V~iWD~~-~~~~~~~~~~~ 765 (847)
+.|||.+ +.+.+..|...
T Consensus 256 ~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 256 YAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEEEESSTTCCEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEec
Confidence 9999997 67778888643
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.68 E-value=0.058 Score=56.83 Aligned_cols=137 Identities=8% Similarity=0.034 Sum_probs=73.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
...+.+||..+. .+..+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.
T Consensus 23 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 99 (306)
T 3ii7_A 23 PQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA 99 (306)
T ss_dssp TTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE
T ss_pred CceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE
Confidence 456777888776 56655444332222233332 67778888765 5788999887654322 211111222233
Q ss_pred EcCCCCEEEEEeCC------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeC---------CCcEEE
Q 003106 688 FSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG---------DGEIRY 750 (847)
Q Consensus 688 fsp~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~---------Dg~V~i 750 (847)
+ +++.++.|+.+ ..+.+||..+. . ...+.. ....-.+++.. + ..+++.|+. -..+.+
T Consensus 100 ~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~ 173 (306)
T 3ii7_A 100 A--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEV 173 (306)
T ss_dssp E--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCEESCTTTCEECCCEEE
T ss_pred E--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEEE-C-CEEEEECCCCCCCCcccccceEEE
Confidence 3 56666777655 45899999873 2 222211 11111122222 3 346666653 345889
Q ss_pred EECCCCceE
Q 003106 751 WSINNGSCT 759 (847)
Q Consensus 751 WD~~~~~~~ 759 (847)
||+.+.+-.
T Consensus 174 yd~~~~~W~ 182 (306)
T 3ii7_A 174 YDPATETWT 182 (306)
T ss_dssp EETTTTEEE
T ss_pred eCCCCCeEE
Confidence 999887543
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.64 E-value=0.1 Score=55.96 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=96.6
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE-EEEC--CCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAV-LWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~-vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+.+++.+. ..+...+.++++.+++.+++++. +|.|. -+|- .+.+.+. ......+..+.+.+++..+ .++.+
T Consensus 151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp TSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence 44565554 24566899999999988887765 45444 4443 2233321 2345678999999988654 55568
Q ss_pred CcEEEEECCCCCceEEEec-c---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC---CceEEEEEe
Q 003106 702 KTVRVWDADNPGYSLRTFM-G---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---SFCCWCVNA 774 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~-~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---~~~v~~~~~ 774 (847)
|.|++++.+. +.....+. . +...+.+|.|.+++. +++++ .+|.| ++....|+.-..+... ...+.++.+
T Consensus 225 G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp TEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred ceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence 8888875332 22222221 1 223588999998755 55444 47777 5555556544444321 234555655
Q ss_pred cCCCEEEEEcCCCcEEEEcC
Q 003106 775 MNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~ 794 (847)
.+...+|.+..+|.|..++.
T Consensus 301 ~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EETTEEEEECSTTEEEEECC
T ss_pred ECCCceEEEcCCceEEEEcC
Confidence 55667888888888776653
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.61 E-value=0.076 Score=55.74 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=71.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc---eeEE--EccCCCCeE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLK---SKTN--LEEHSSLIT 684 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~---~~~~--l~~h~~~I~ 684 (847)
..+.++|+.+. .+..+..+........++. -++++++.|+.+ ..|.+||..+.+ -... +........
T Consensus 31 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 34667777666 5555443332222222222 267788888765 468999988765 2221 211112222
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEEC
Q 003106 685 DVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSI 753 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~ 753 (847)
++.+ +++.++.|+.+ ..+.+||+.+..... ..+...... .+++.. + ..+++.|+.+ ..|.+||+
T Consensus 108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-S-GVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-T-TEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-C-CEEEEECCCCCCcccceEEEEeC
Confidence 3333 46666666643 358899988732211 111111111 122222 3 3466677654 46899999
Q ss_pred CCCceEE
Q 003106 754 NNGSCTR 760 (847)
Q Consensus 754 ~~~~~~~ 760 (847)
.+.+-..
T Consensus 183 ~~~~W~~ 189 (301)
T 2vpj_A 183 HTGHWTN 189 (301)
T ss_dssp TTTEEEE
T ss_pred CCCcEEe
Confidence 8876443
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.53 E-value=0.097 Score=54.97 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=69.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~f 688 (847)
.+.++|+.+. .+..+..+......-.++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.+
T Consensus 31 ~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 31 SVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred cEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 4667777766 55555433322222222222 67778887755 3588999886553322 1111112222333
Q ss_pred cCCCCEEEEEeCCC-----cEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-------CcEEEEECC
Q 003106 689 SPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSIN 754 (847)
Q Consensus 689 sp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-------g~V~iWD~~ 754 (847)
+++.++.|+.++ .+.+||+.+. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~ 181 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSN-E-WFHVAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNAT 181 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETT
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCC-e-EeecCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCC
Confidence 466667776553 5788898863 2 222211 11111122222 3 3466666542 358899998
Q ss_pred CCceEE
Q 003106 755 NGSCTR 760 (847)
Q Consensus 755 ~~~~~~ 760 (847)
+.+...
T Consensus 182 ~~~W~~ 187 (302)
T 2xn4_A 182 TNEWTY 187 (302)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 876443
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.52 E-value=1.1 Score=47.58 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=132.1
Q ss_pred CCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 598 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 598 d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
|+.||+-... +.+..|.+.|+..+... ..+.+.+ -+.-.+|..+.||.-. ..++.|||+++...+..+.
T Consensus 36 DkyicVrE~~----~~~~~VvIiDl~n~~~~-~Rrpi~A-----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~ 104 (365)
T 2xzh_A 36 DKFICIREKV----GEQAQVVIIDMNDPSNP-IRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 104 (365)
T ss_dssp TTEEEEEEEE----TTEEEEEEEETTSTTSC-EEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEecC----CCCCEEEEEECCCCCCc-ccccccc-----ceeeeCCCccEEEEec-CCeEEEechHHhhhhccee
Confidence 4555554432 22336788888875321 1111111 1334577778777765 6789999999988888776
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEeC------CCc
Q 003106 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCDG------DGE 747 (847)
Q Consensus 678 ~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s~------Dg~ 747 (847)
-. ..|.--+|-.+. .|+-.+ +..|+-|++.....+++.|..|. ..|..-..+++.++++++|-. .|.
T Consensus 105 ~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 105 MT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp CS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred cC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 54 467677776544 555554 67899999986567788887663 457777888999988877642 367
Q ss_pred EEEEECCCCceEEEEeeCCceEEEEEecCC---CEEEE----EcCCCcEEEEcCCcc--cceeee------cccccCCCC
Q 003106 748 IRYWSINNGSCTRVFKVESFCCWCVNAMNR---PCLWD----KLDAGDIQISDSLFI--NANIFC------GLGWYGSDE 812 (847)
Q Consensus 748 V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~----~~~~g~i~i~d~~~~--~~~~~~------~~~~~~~~~ 812 (847)
+.+|.++.+. -..+++|..+-..+...+. ..+++ ...++.+.+.+.... ....+. .+......+
T Consensus 182 mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~D 260 (365)
T 2xzh_A 182 MQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 260 (365)
T ss_dssp EEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTC
T ss_pred EEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCC
Confidence 7888887543 3445555443333322211 12222 222356777764321 111110 011011111
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.. +. .....++++.-..-|.|.+||+.|
T Consensus 261 FPVa---mq-vs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 261 FPVA---MQ-ISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp CEEE---EE-EETTTTEEEEEETTSEEEEEETTT
T ss_pred ceEE---EE-ecccCCEEEEEeCCcEEEEEEccc
Confidence 1110 00 122456788888999999999876
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.49 E-value=0.23 Score=53.03 Aligned_cols=158 Identities=8% Similarity=-0.009 Sum_probs=96.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccC-----C--CCeEEEEE---cCCCCEEEEEe----
Q 003106 635 RASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-----S--SLITDVRF---SPSMPRLATSS---- 699 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-----~--~~I~~v~f---sp~~~~Lasgs---- 699 (847)
......-.|++|++....|..++ ..++|..||...+......... . ..+..|.| .++++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444455899988666666666 7899999999865443332221 1 13689999 68876666543
Q ss_pred ---------CCCcEEEEECC---CCCceEEEe--cc-----------CCCCeEEEEEecCCCeEEEEEeCC-CcEEEEEC
Q 003106 700 ---------FDKTVRVWDAD---NPGYSLRTF--MG-----------HSASVMSLDFHPNKDDLICSCDGD-GEIRYWSI 753 (847)
Q Consensus 700 ---------~Dg~V~iWD~~---~~~~~~~~~--~~-----------h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~ 753 (847)
.+..|..||+. + ++.+... .. -...+..|+..++|.-+ ++++.. +.|..+|.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY-Vt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY-VAFALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE-EEEEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCCEE-EeCCCCCCeEEEEeC
Confidence 26779999998 5 3333222 11 11247889999998855 477777 77777766
Q ss_pred CCCceEEEEeeCC------ceEEEEEec-CCCEEEEEcCCCcEEEEcCC
Q 003106 754 NNGSCTRVFKVES------FCCWCVNAM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 754 ~~~~~~~~~~~~~------~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
... .+..+.... .....+.+. +...++.....+.+..+|..
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 543 333332111 112234444 34455555558889888865
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.30 E-value=0.11 Score=57.34 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=75.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------eeEEEcc------CCCCeEEEEEcCC---CCEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------------SKTNLEE------HSSLITDVRFSPS---MPRLATS 698 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~------------~~~~l~~------h~~~I~~v~fsp~---~~~Lasg 698 (847)
.|..+..+|+|++||..+ +..|.|..+..+. ..+.+.- ....|..+.|||- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999999986 5688888876221 1123321 2467999999995 4589999
Q ss_pred eCCCcEEEEECCCCC-ceEEEec---------cCCCCeEEEEEecCCCeEEE-EEeCCCcEEEE
Q 003106 699 SFDKTVRVWDADNPG-YSLRTFM---------GHSASVMSLDFHPNKDDLIC-SCDGDGEIRYW 751 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~-~~~~~~~---------~h~~~V~sl~fsp~g~~ll~-s~s~Dg~V~iW 751 (847)
..|++||+||+.... .+. .+. .....|.+++|..++-.|.+ +.+.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999998522 222 332 12356889999987655443 23466777644
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.30 E-value=1.8 Score=47.71 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=131.5
Q ss_pred CCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 598 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 598 d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
|+.||+-.. .+....|-+.|+..+... ..+.+. --+.-.+|..+.||.=. ..++.|||+++...+..+.
T Consensus 35 DkyicVrE~----~~~~~~vvIiDl~~~~~~-~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~ 103 (494)
T 1bpo_A 35 DKFICIREK----VGEQAQVVIIDMNDPSNP-IRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 103 (494)
T ss_dssp TTEEEEEEC----CTTCCEEEEEETTSTTSC-EEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEec----CCCCCeEEEEECCCCCcc-eecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee
Confidence 445555433 223347888998876322 111111 11344567777776655 6789999999988888776
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEe------CCCc
Q 003106 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCD------GDGE 747 (847)
Q Consensus 678 ~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s------~Dg~ 747 (847)
-.+ .|.--+|-.+ +.|+-.+ +..|+-|++.....+++.|..|. ..|..-..+++.++++++|- -.|.
T Consensus 104 ~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 104 MTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred cCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 544 4555566543 3555554 67899999986567788887663 46777788899998887664 2467
Q ss_pred EEEEECCCCceEEEEeeCCceEEEEEecCC---CEEEEEc----CCCcEEEEcCCcc--cceee------ecccccCCCC
Q 003106 748 IRYWSINNGSCTRVFKVESFCCWCVNAMNR---PCLWDKL----DAGDIQISDSLFI--NANIF------CGLGWYGSDE 812 (847)
Q Consensus 748 V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~----~~g~i~i~d~~~~--~~~~~------~~~~~~~~~~ 812 (847)
+.+|.++.+. -..+.+|...-..+...+. ..+++.. .++.+.+.+.... ....+ ..+......+
T Consensus 181 mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 181 MQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp EEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred EEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 8889887553 3445555444333332221 1122211 2366777764321 00011 0011001111
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.. +. .....++++.-..-|.|.+||+.|
T Consensus 260 FPva---mq-vs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 260 FPVA---MQ-ISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp CEEE---EE-EETTTTEEEEEETTSEEEEEETTT
T ss_pred ceeE---EE-ecccCCEEEEEecCceEEEEeccc
Confidence 1110 01 122456788888899999999876
No 309
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.24 E-value=0.68 Score=55.51 Aligned_cols=168 Identities=12% Similarity=0.121 Sum_probs=100.5
Q ss_pred cEEEEeccCCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-cc----CCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EE----HSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~----h~~~I~~v~f 688 (847)
.+.++|..++ .+...... ......|.++....+|.+.+ |+.+ -|..||..+++..... .. ....|.+|..
T Consensus 122 Gl~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 198 (758)
T 3ott_A 122 GLYTYQLQSR-KLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLE 198 (758)
T ss_dssp EEEEEETTTC-CEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEE
T ss_pred cceeEeCCCC-eEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEE
Confidence 5667776654 23222110 11235688998887877665 4444 4778887765543211 11 1234889988
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-----
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 763 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~----- 763 (847)
..++..|..|+. +-|..+|..+ +............|.+|....+|. +. .|+. +-|.++|..++.......
T Consensus 199 d~~~~~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~ 273 (758)
T 3ott_A 199 DTTRQCVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNI 273 (758)
T ss_dssp ETTTTEEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCT
T ss_pred ECCCCEEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCc
Confidence 887776666663 5688899876 332211111234588888888876 44 3343 458888887765433221
Q ss_pred --eCCceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 764 --VESFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 764 --~~~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
.....|.++..+....+|.++..| +.++
T Consensus 274 ~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 274 QSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp TSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred CcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 123458888888888999999877 4433
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.21 E-value=0.73 Score=49.89 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=89.8
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeC---C------------CcEEEEECCCCceeEE
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRAS-TSKVICCHFSSDGKLLATGGH---D------------KKAVLWHTDTLKSKTN 675 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~---D------------g~V~vwd~~~~~~~~~ 675 (847)
.+..|.+|++..+ .....+.++.+. -...+++++.++|++.++... | ..-+||.++.++. ..
T Consensus 137 ~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~ 215 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RV 215 (355)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EE
T ss_pred CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EE
Confidence 3567888887653 244555556543 346889999999998887641 1 2233444433333 23
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEeccCCCCeEEEEEec-CCCeEEEEEeCC-CcEEE
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHP-NKDDLICSCDGD-GEIRY 750 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~D-g~V~i 750 (847)
+...-..-+.|+|+||++.|+.+. ..+.|+.||+...+.. .+.+ ...+..-.+++++ +|. +++++..+ +.|..
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~ 293 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFF 293 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHS
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEE
Confidence 333334578999999999887665 5788999999753332 2233 2345677899998 576 55555534 35555
Q ss_pred EECCC--CceEEEEe
Q 003106 751 WSINN--GSCTRVFK 763 (847)
Q Consensus 751 WD~~~--~~~~~~~~ 763 (847)
||... +..+..+.
T Consensus 294 ~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 294 YDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCTTSCCCEEEEEEE
T ss_pred ECCCCCCCCEEEEEE
Confidence 55542 34444443
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.19 E-value=0.28 Score=54.08 Aligned_cols=144 Identities=17% Similarity=0.060 Sum_probs=92.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------
Q 003106 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------- 713 (847)
Q Consensus 647 spdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~--------- 713 (847)
+.+|..|+.+- ++.||.-++.....-+.++.. -..|..+..+|+|++||..+ +.+|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34666676664 578888887744333344322 22588899999999998886 6689998887321
Q ss_pred --ceEEEecc------CCCCeEEEEEecCCCe--EEEEEeCCCcEEEEECCCC--ceEEEEeeC---------CceEEEE
Q 003106 714 --YSLRTFMG------HSASVMSLDFHPNKDD--LICSCDGDGEIRYWSINNG--SCTRVFKVE---------SFCCWCV 772 (847)
Q Consensus 714 --~~~~~~~~------h~~~V~sl~fsp~g~~--ll~s~s~Dg~V~iWD~~~~--~~~~~~~~~---------~~~v~~~ 772 (847)
...+.+.- ....|..+.|||-+.. -|++-..|+.||+||+... ++. .++.. ...+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 11223322 2567999999997543 4447777999999999862 222 33211 1334455
Q ss_pred Eec-CCCEEEEEc--CCCcEEEEc
Q 003106 773 NAM-NRPCLWDKL--DAGDIQISD 793 (847)
Q Consensus 773 ~~~-~~~~l~~~~--~~g~i~i~d 793 (847)
+|. +...+|... ++|.|+...
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEES
T ss_pred EEcCCCcEEEEEecCCCCCEEEEC
Confidence 443 556788855 888887654
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.11 E-value=0.24 Score=53.73 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=97.7
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeec-----CCCCEEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCC-c---eeEEE
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRA-----STSKVICCHFSS--DGK-LLATGGH---DKKAVLWHTDTL-K---SKTNL 676 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~-----h~~~V~~l~fsp--dg~-~Lasgs~---Dg~V~vwd~~~~-~---~~~~l 676 (847)
.+|.|.++|..+. ...+.+. +.+ ..-....|.+.+ +++ +|+.+.. +.+|.||+++.. . .+.++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 4567777887632 1222222 222 234566777755 454 4555533 467888877643 2 23334
Q ss_pred ccC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeE
Q 003106 677 EEH-SSLITDVRFSPSMPRLATSSF-----------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 677 ~~h-~~~I~~v~fsp~~~~Lasgs~-----------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
.+. -...+++++.++|.+.++... .|.|..||.. . +..+...-...+.|+|+||++.+
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence 332 235789999999987666541 2345555542 2 22332333567899999999988
Q ss_pred EEEEeCCCcEEEEECCC-Cce--EEEEeeCCceEEEEEecC-CCEEEEEc
Q 003106 739 ICSCDGDGEIRYWSINN-GSC--TRVFKVESFCCWCVNAMN-RPCLWDKL 784 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~l~~~~ 784 (847)
+++-+..+.|..||+.. ++. .+.+. .......+..+. ...+|.+.
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 88887889999999964 332 23442 234556666676 47788744
No 313
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.09 E-value=1.7 Score=52.00 Aligned_cols=167 Identities=9% Similarity=0.020 Sum_probs=100.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----cCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-----~h~~~I~~v~fs 689 (847)
..+.++|..+. .+... .......|.++.. .++ .|..|+.+ -|..||..+++.. .+. .....|.++...
T Consensus 82 ~Gl~~yd~~~~-~f~~~--~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d 154 (758)
T 3ott_A 82 NGILVYNYRAD-RYEQP--ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRT 154 (758)
T ss_dssp TEEEEEETTTT-EECCC--SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEEC
T ss_pred CCeEEEeCCCC-EEECc--ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEc
Confidence 34677887765 33321 1112345777765 355 56666665 5888998765543 331 123568898888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.++...+ |+.+ -|..||..+ +. ...+.. ....|.+|....++..+.+ |+. +-|..+|..+++......
T Consensus 155 ~~g~lWi-gt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 155 KDNQIYV-GTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp TTCCEEE-EETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EEE-EEEEEEETTTTEEEEEEE
T ss_pred CCCCEEE-EeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCEEEE-EEC-CCCeEEcCCCCeEEeccC
Confidence 7776444 5544 578888876 32 222211 1234888888877665443 332 458889988776433222
Q ss_pred eCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 764 VESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 764 ~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.....|.++..+....+|.++.+ -+.+++..
T Consensus 229 l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 229 FHNNSIKSLALDGNGDLLAGTDN-GLYVYHND 259 (758)
T ss_dssp EEEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred CCCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence 23445788888888999999865 46667643
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.98 E-value=0.15 Score=53.91 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=71.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCceeEE--EccCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----D-------KKAVLWHTDTLKSKTN--LEEHSS 681 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----D-------g~V~vwd~~~~~~~~~--l~~h~~ 681 (847)
..+.+||..+. .+.. ..+..........+...++++++.|+. + ..|.+||..+.+-... +.....
T Consensus 13 ~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 45778888877 5554 333333334444444558888888884 1 1277888876543221 111111
Q ss_pred CeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeC-C-----
Q 003106 682 LITDVRFSPSMPRLATSSFD--------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG-D----- 745 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~D--------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~-D----- 745 (847)
....+.+ +++.++.|+.+ ..|.+||..+. . ...+.. ....-.+++.. + ..+++.|+. +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF-K-WGESDPLPYVVYGHTVLSH-M-DLVYVIGGKGSDRKCL 164 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE-T-TEEEEECCBCTTSCBC
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC-c-EeECCCCCCcccceeEEEE-C-CEEEEEeCCCCCCccc
Confidence 1122222 45556666632 45899999873 2 222211 11111122222 3 347767765 2
Q ss_pred CcEEEEECCCCce
Q 003106 746 GEIRYWSINNGSC 758 (847)
Q Consensus 746 g~V~iWD~~~~~~ 758 (847)
..|.+||+.+.+-
T Consensus 165 ~~~~~yd~~~~~W 177 (315)
T 4asc_A 165 NKMCVYDPKKFEW 177 (315)
T ss_dssp CCEEEEETTTTEE
T ss_pred ceEEEEeCCCCeE
Confidence 4689999988753
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.69 E-value=0.2 Score=52.73 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=69.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCceeEE--EccCCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----D-----KKAVLWHTDTLKSKTN--LEEHSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----D-----g~V~vwd~~~~~~~~~--l~~h~~~I 683 (847)
..+.++|..+. .+..+..+.........+.+ ++++++.|+. + ..|.+||..+.+-... +.......
T Consensus 39 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 115 (308)
T 1zgk_A 39 SYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 115 (308)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc
Confidence 34677777766 55555433222222222222 6777777775 2 4688899886543221 11111122
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCC-----CcEEE
Q 003106 684 TDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 750 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~i 750 (847)
.++.+ +++.++.|+.+ ..|.+||+.+. . ...+. ........+.+ + ..+++.|+.+ ..|.+
T Consensus 116 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 116 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD-E-WHLVAPMLTRRIGVGVAVL--N-RLLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEE
T ss_pred EEEEE--CCEEEEEcCCCCCcccccEEEECCCCC-e-EeECCCCCccccceEEEEE--C-CEEEEEeCCCCCCcCceEEE
Confidence 23333 45566666543 45889998863 2 22221 11111122222 3 4577677654 46899
Q ss_pred EECCCCceE
Q 003106 751 WSINNGSCT 759 (847)
Q Consensus 751 WD~~~~~~~ 759 (847)
||+.+.+-.
T Consensus 189 yd~~~~~W~ 197 (308)
T 1zgk_A 189 YYPERNEWR 197 (308)
T ss_dssp EETTTTEEE
T ss_pred EeCCCCeEe
Confidence 999877543
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.65 E-value=0.15 Score=55.18 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=61.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEc---cCCCCeEEEEEcCC---CCEEEEEeC-C-----Cc
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KT 703 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~---~h~~~I~~v~fsp~---~~~Lasgs~-D-----g~ 703 (847)
-....+|+|.|||+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+.+.. + +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345779999999985555 5679999998 3332 22221 12356899999998 556655443 2 67
Q ss_pred EEEEECCCCC-----ceEEEec---cCCCCeEEEEEecCCCeEEEEE
Q 003106 704 VRVWDADNPG-----YSLRTFM---GHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 704 V~iWD~~~~~-----~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
|..|+..... ..+..+. +.......|+|.|+|. |+++.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 8888876411 1122232 1112346799999985 55454
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.58 E-value=0.6 Score=49.25 Aligned_cols=135 Identities=8% Similarity=0.032 Sum_probs=68.5
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCceeEE--EccCCCCe
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----DK-------KAVLWHTDTLKSKTN--LEEHSSLI 683 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg-------~V~vwd~~~~~~~~~--l~~h~~~I 683 (847)
+.+||..+. .+.. ..+..........+...++++++.|+. ++ .+.+||..+.+-... +.......
T Consensus 26 ~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 26 AVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred eEEECCCCC-ceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 678888877 5554 233322233333444557888888883 12 177888876543221 11111112
Q ss_pred EEEEEcCCCCEEEEEeCC-------CcEEEEECCCCCceEEEeccCCCC--eEEEEEecCCCeEEEEEeC------CCcE
Q 003106 684 TDVRFSPSMPRLATSSFD-------KTVRVWDADNPGYSLRTFMGHSAS--VMSLDFHPNKDDLICSCDG------DGEI 748 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D-------g~V~iWD~~~~~~~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~------Dg~V 748 (847)
..+.+ +++.++.|+.+ ..|.+||+.+.. ...+..-... -.+++. -+ ..+++.|+. -..|
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ET-TEEEEECCEESSSCBCCCE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-EC-CEEEEEcCCCCCCCccceE
Confidence 22223 45666777654 248888988632 2222111110 111222 23 346666653 2458
Q ss_pred EEEECCCCceE
Q 003106 749 RYWSINNGSCT 759 (847)
Q Consensus 749 ~iWD~~~~~~~ 759 (847)
.+||+.+.+-.
T Consensus 178 ~~yd~~~~~W~ 188 (318)
T 2woz_A 178 FIYNPKKGDWK 188 (318)
T ss_dssp EEEETTTTEEE
T ss_pred EEEcCCCCEEE
Confidence 99999887643
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.51 E-value=1 Score=48.54 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=21.2
Q ss_pred CcceEEEecCCCeEeecCCCeEEeCCCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQLWDDKDLE 583 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~iWD~~~~~ 583 (847)
.-..++|.|||+.++++...+|+-+++++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~~g~ 60 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFREGR 60 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEECCC
Confidence 34688999999988887767776655443
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.41 E-value=2 Score=46.29 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=55.0
Q ss_pred CCEEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC--c-----ee-EEEcc-CCCCeEEEEEcCCCCEEEEE
Q 003106 639 SKVICCHFSSD---GKLLATGGH----D----KKAVLWHTDTL--K-----SK-TNLEE-HSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 639 ~~V~~l~fspd---g~~Lasgs~----D----g~V~vwd~~~~--~-----~~-~~l~~-h~~~I~~v~fsp~~~~Lasg 698 (847)
.....|+|+|+ +..|+++.. + ..|..|+.+.. . .+ ..+.. .......|+|.|||.++++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 45788999997 455544432 3 56777776543 1 11 11221 11134679999999866654
Q ss_pred eC-------------CCcEEEEECCCC--------CceEEEeccCCCCeEEEEEecCCCeEEEEE
Q 003106 699 SF-------------DKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 699 s~-------------Dg~V~iWD~~~~--------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
+. .|.|..+|.+.. ...+. ..+|. ....|+|+|+...++++-
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEe
Confidence 32 245555555421 01121 23443 356899999434465443
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.40 E-value=0.76 Score=51.61 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEcc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEE------HSSLITDVRFSPS---MPRLATSSF------ 700 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~------h~~~I~~v~fsp~---~~~Lasgs~------ 700 (847)
-...++|+|.|||+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346779999999997777544457888886555432 22221 2356789999996 555554432
Q ss_pred -------CCcEEEEECCCCC------ceE-EEec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 701 -------DKTVRVWDADNPG------YSL-RTFM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 701 -------Dg~V~iWD~~~~~------~~~-~~~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
...|.-|++.... +.+ ..+. ........|+|.|+|..++ +.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv-~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY-TIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE-EEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE-EEC
Confidence 2346666654311 111 1122 1123478899999997444 443
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.29 E-value=1.4 Score=55.36 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=95.8
Q ss_pred CcEEEEeccCCceeeEeEEee-cCCCCEEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCceeEEEc-c
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHF---SSD-GKLLATGG----------HDKKAVLWHTDTLKSKTNLE-E 678 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~f---spd-g~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~-~ 678 (847)
+.++++|..+. +.+..+. .....+.|++. ..+ ..+|+.|. ..|.|+||++..++.....+ .
T Consensus 807 s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 807 HNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 45677776644 3333332 22344555553 322 46888886 24789999987544332221 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--C
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--N 755 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--~ 755 (847)
..+.|++|+-- +| +|++|- ..+|+|||+.. ...++ ....+ ..|..+.....+. +++.|+.-..|.++..+ .
T Consensus 884 v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~-~~~L~~~~~~~-~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTT-EKELRTECNHY-NNIMALYLKTKGD-FILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECT-TSCEEEEEEEC-CCSCEEEEEEETT-EEEEEESSBCEEEEEEETTT
T ss_pred cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCC-CceEEEEeecc-ccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCC
Confidence 46788888744 24 555544 58899999986 33333 22112 1233223222344 45577766667665443 3
Q ss_pred CceEEEEe--eCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 756 GSCTRVFK--VESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 756 ~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
++ +..+. ....++.++.+.....+..+...|.+.++.
T Consensus 958 ~~-L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 958 GN-FEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp TE-EEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred Ce-EEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEe
Confidence 33 33332 345667777776666777788888888775
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.26 E-value=0.66 Score=48.35 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v 686 (847)
...+.++|+.+. .++.+..+........++.+ ++++++.|+.+ ..|.+||+.+.+-... +........++
T Consensus 127 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 203 (301)
T 2vpj_A 127 HTSMERYDPNID-QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA 203 (301)
T ss_dssp CCEEEEEETTTT-EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cceEEEEcCCCC-eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE
Confidence 456788998877 67766655433222233333 67788888765 4688999887644322 11111122233
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECC
Q 003106 687 RFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSIN 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~ 754 (847)
.+ +++.++.|+.+ ..|.+||+++. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||++
T Consensus 204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPRCYVGATVL-R-GRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBEEEEEEEETT
T ss_pred EE--CCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCcccceeEEEE-C-CEEEEEcCcCCCcccccEEEEcCC
Confidence 33 45566677654 46899999873 2 222211 11111122222 3 3466677655 357788887
Q ss_pred CCce
Q 003106 755 NGSC 758 (847)
Q Consensus 755 ~~~~ 758 (847)
+.+.
T Consensus 278 ~~~W 281 (301)
T 2vpj_A 278 IDSW 281 (301)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7653
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.26 E-value=0.33 Score=52.59 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=61.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEc---cCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K 702 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~---~h~~~I~~v~fsp~---~~~Lasgs~----D----g 702 (847)
-....+|+|.|||++++ +..+|.|+++|. +++ .+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997555 466799999974 444 222221 12356899999998 556655443 3 5
Q ss_pred cEEEEECCCCC------ce-EEEec-cCCCCeEEEEEecCCCeEEEEE
Q 003106 703 TVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 703 ~V~iWD~~~~~------~~-~~~~~-~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
.|..|+..... +. +..+. +.......|+|.|+|. |+++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE
Confidence 67778776421 11 11122 1112346799999986 55454
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.26 E-value=0.35 Score=52.34 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=81.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEE----ccCCCCeEEEEEcCC---CCEEEEEe-C-------
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNL----EEHSSLITDVRFSPS---MPRLATSS-F------- 700 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~---~~l----~~h~~~I~~v~fsp~---~~~Lasgs-~------- 700 (847)
.....|+|.|||++|+++..+|.|++++.+ +... ..+ .........|+|+|+ +..|+.+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 357899999999934455678999999854 3221 111 112345789999996 55555443 2
Q ss_pred CCcEEEEECCCCCc---eEEE-ecc------CCCCeEEEEEecCCCeEEEEEeC-------------CCcEEEEECCCC-
Q 003106 701 DKTVRVWDADNPGY---SLRT-FMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG- 756 (847)
Q Consensus 701 Dg~V~iWD~~~~~~---~~~~-~~~------h~~~V~sl~fsp~g~~ll~s~s~-------------Dg~V~iWD~~~~- 756 (847)
...|..|++..... ...+ +.. .......|.|.|+|. |+++.+. .|.|.-+|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566666653211 1111 111 111235799999985 5555433 245666666532
Q ss_pred -----------ceEEEEeeCCceEEEEEecC-CCEEEEEcCC
Q 003106 757 -----------SCTRVFKVESFCCWCVNAMN-RPCLWDKLDA 786 (847)
Q Consensus 757 -----------~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~ 786 (847)
.....+.........++++. ...+|.....
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence 02223333334456666666 6677776544
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.14 E-value=0.26 Score=49.47 Aligned_cols=142 Identities=12% Similarity=-0.006 Sum_probs=80.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
.+.+++|+|+|.+.++ .+|.+.-.+..+... -..+- +-.. ..++.|.++|.+.++ .||.|+-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999987666 677777666544211 11111 1111 478999999987666 469988887643
Q ss_pred CCce------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------eEEEEe-eCCceEEEEEecCCC
Q 003106 712 PGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRVFK-VESFCCWCVNAMNRP 778 (847)
Q Consensus 712 ~~~~------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------~~~~~~-~~~~~v~~~~~~~~~ 778 (847)
.+.. ...-.+--..+..|.|.|+|. |. +.. |+.+.-+...++. ....+. ........+.+....
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Ly-av~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LY-AVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EE-EEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EE-EEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2211 111111224679999999986 44 444 7776444333221 111222 222233334466777
Q ss_pred EEEEEcCCCcEE
Q 003106 779 CLWDKLDAGDIQ 790 (847)
Q Consensus 779 ~l~~~~~~g~i~ 790 (847)
.||.+. ++.+.
T Consensus 194 ~l~~v~-~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ-GGKFY 204 (236)
T ss_dssp CEEEEE-TTEEE
T ss_pred cEEEEe-CCeEE
Confidence 777777 55543
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.05 E-value=4.6 Score=50.76 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred CcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCC-
Q 003106 615 AGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS- 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~- 691 (847)
..|++.+.... ..+..++.. ...|.+++.+ +..++.++ ++.|.++.++.+...... ..-...|.|+++.+.
T Consensus 492 ~~Irli~~~~~---~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~ 565 (1158)
T 3ei3_A 492 ASVRLVSQEPK---ALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLG 565 (1158)
T ss_dssp SCEEEEESSSC---CEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred CEEEEEECCCC---eEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence 34566665432 233344432 3356666655 34666665 678888887765432211 123567999999864
Q ss_pred -----CCEEEEEeC-CCcEEEEECCCCCceEEEec-cCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEEC--CCCc
Q 003106 692 -----MPRLATSSF-DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSI--NNGS 757 (847)
Q Consensus 692 -----~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~--~~~~ 757 (847)
+++++.|.+ |++|+|+++.+ ...+.... +......+|.+..- +..+|..|-.||.+..+.+ .+|.
T Consensus 566 ~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~ 640 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL 640 (1158)
T ss_dssp SSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCC
T ss_pred CCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCc
Confidence 368999997 99999999986 44443322 22234555555432 3345667888998866554 4454
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.03 E-value=0.9 Score=48.99 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=67.3
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEE----ccCCCCeEEEEEcCC---CCEEEEE-e-
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL----EEHSSLITDVRFSPS---MPRLATS-S- 699 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l----~~h~~~I~~v~fsp~---~~~Lasg-s- 699 (847)
+..+...-...+.|+|.|||++|++--..|.|++++.++++.. ..+ .........|+|+|+ +.+|+.+ +
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3334444567889999999998777655899999987655432 222 123456899999996 3455443 2
Q ss_pred -CCCcEEEEECCCC---------Cce-EEEec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 700 -FDKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 700 -~Dg~V~iWD~~~~---------~~~-~~~~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
.++.|.-|.+... .+. +..+. +.......|.|.|+|. |+++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 3555666665431 111 22222 1112345699999986 554543
No 328
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.02 E-value=1.1 Score=47.21 Aligned_cols=138 Identities=8% Similarity=0.021 Sum_probs=78.3
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe--CCC--cE
Q 003106 643 CCHFSSDGKLLATGGHD--------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDK--TV 704 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~D--------------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs--~Dg--~V 704 (847)
+--|+++|++|+-+... ..|+..+++..+... +... . +..|++++++|+-.. .++ .|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34557788888877543 367777877654332 3221 1 236777888888766 334 45
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
+.-+++ +.....+..+.. +.|+++++.|+.+......|.+-++..+.....+.+. .. ..+.......+|+..
T Consensus 132 y~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 132 YRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-CY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEEETT--SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-EE-EEEEEETTEEEEEEG
T ss_pred EEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-cc-ceeeecCCEEEEEEc
Confidence 555555 333445544433 4567788887766555678888888876655444322 11 122234555556554
Q ss_pred CC-CcEEEEc
Q 003106 785 DA-GDIQISD 793 (847)
Q Consensus 785 ~~-g~i~i~d 793 (847)
.+ ..|...+
T Consensus 204 ~~~~~I~~~~ 213 (302)
T 3s25_A 204 NRDNAIVHVN 213 (302)
T ss_dssp GGTTEEEEEC
T ss_pred CCCcEEEEEE
Confidence 33 2344444
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.78 E-value=0.57 Score=48.91 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
..+.+||..+. .+..+..+........++.+ ++++++.|+.++ .|.+||+.+.+-... +........++.
T Consensus 77 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 153 (302)
T 2xn4_A 77 RTVDSYDPVKD-QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV 153 (302)
T ss_dssp CCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cceEEECCCCC-ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE
Confidence 46788898877 66666554433333333333 677888887654 577888876543322 111111122222
Q ss_pred EcCCCCEEEEEeCC-------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEEC
Q 003106 688 FSPSMPRLATSSFD-------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSI 753 (847)
Q Consensus 688 fsp~~~~Lasgs~D-------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~ 753 (847)
+ +++.++.|+.+ ..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+
T Consensus 154 ~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 154 V--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL-N-NLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp E--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-T-TEEEEECCBSSSSBCCCEEEEET
T ss_pred E--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE-C-CEEEEECCCCCCcccceEEEEeC
Confidence 2 45556666542 358899998732 222211 11111122222 3 4577777654 46899999
Q ss_pred CCCceE
Q 003106 754 NNGSCT 759 (847)
Q Consensus 754 ~~~~~~ 759 (847)
++.+..
T Consensus 228 ~~~~W~ 233 (302)
T 2xn4_A 228 TTNAWR 233 (302)
T ss_dssp TTTEEE
T ss_pred CCCCEe
Confidence 887644
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.61 E-value=5.9 Score=42.53 Aligned_cols=26 Identities=12% Similarity=-0.151 Sum_probs=20.2
Q ss_pred CcceEEEecCCCeEeecC-CCeEEeCC
Q 003106 555 SKPLMMFGTDGAGTLTSP-SNQLWDDK 580 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~~iWD~~ 580 (847)
.-..++|.|||+.+++.. ..+||-+.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~ 59 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVD 59 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEEC
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEE
Confidence 457899999999888877 66776554
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.60 E-value=2.3 Score=44.88 Aligned_cols=134 Identities=4% Similarity=-0.021 Sum_probs=76.6
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEec
Q 003106 644 CHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 644 l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~ 720 (847)
.+|+++++.|+-.+. ...|.+.+++.+.....+.+ ... +.++|++.+|+-...++ .|..-+++. .....+.
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt 223 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLT 223 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEe
Confidence 456778888886665 57888888876655444332 222 34669999888776543 455555554 3344443
Q ss_pred cCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEE
Q 003106 721 GHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~ 790 (847)
. ..+ ..|+|++.+++.+.. ..+.|..-++........... . +..+....+...|+....+.|.
T Consensus 224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~~~~i~ 287 (302)
T 3s25_A 224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFVSNKEY 287 (302)
T ss_dssp C--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETTTCCEE
T ss_pred C--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECCCCeEE
Confidence 2 233 347788887765433 245666667764433333322 1 3355555666666665555544
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.12 Score=55.68 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEc--CCCCEEEEE--eCCCcEEEEECCCCCceEEEecc----
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--PSMPRLATS--SFDKTVRVWDADNPGYSLRTFMG---- 721 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fs--p~~~~Lasg--s~Dg~V~iWD~~~~~~~~~~~~~---- 721 (847)
.+++.++.||.|.-+|.++|+.+.+++.. ..++..+.-. +.+..++.+ +.||.|..+|..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 47889999999999999999999988754 1222221100 112234443 5899999999887 433222211
Q ss_pred CCCCeEE---EEE-ec---CCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 722 HSASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 722 h~~~V~s---l~f-sp---~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
..+++.. ... .+ .....+++++.+|.+...|+++|+.+..+...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222211 000 00 01235668999999999999999999888754
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.29 E-value=0.62 Score=48.74 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--EccCCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKTN--LEEHSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~~--l~~h~~~I~~ 685 (847)
...+.++|+.+. .+..+..+........++.+ ++++++.|+.+ ..+.+||..+.+-... +........+
T Consensus 69 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 145 (306)
T 3ii7_A 69 IKRMDCYNVVKD-SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGM 145 (306)
T ss_dssp CCEEEEEETTTT-EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cceEEEEeCCCC-eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE
Confidence 456778888887 66666554433333333333 67788888765 4688999887653322 1111111222
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEE
Q 003106 686 VRFSPSMPRLATSSF---------DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIR 749 (847)
Q Consensus 686 v~fsp~~~~Lasgs~---------Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~ 749 (847)
+.+ +++.++.|+. -..|.+||+.+. ....+.. ....-.++... + ..+++.|+.+ ..|.
T Consensus 146 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 146 VEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp EEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEE
T ss_pred EEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEE
Confidence 222 4555566653 345889999873 2222221 11111222222 3 4466676643 4688
Q ss_pred EEECCCCce
Q 003106 750 YWSINNGSC 758 (847)
Q Consensus 750 iWD~~~~~~ 758 (847)
+||+.+.+-
T Consensus 220 ~yd~~~~~W 228 (306)
T 3ii7_A 220 YYDIKLNEW 228 (306)
T ss_dssp EEETTTTEE
T ss_pred EeeCCCCcE
Confidence 999988753
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.98 E-value=0.67 Score=48.77 Aligned_cols=136 Identities=10% Similarity=0.047 Sum_probs=70.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeE--EEccCCCCeEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD--------KKAVLWHTDTLKSKT--NLEEHSSLITD 685 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--------g~V~vwd~~~~~~~~--~l~~h~~~I~~ 685 (847)
.+.+||..+. .++.+..+........++.+ ++++++.|+.+ ..|.+||..+.+-.. .+........+
T Consensus 68 ~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 144 (315)
T 4asc_A 68 YFLQFDHLDS-EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTV 144 (315)
T ss_dssp EEEEEETTTT-EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ceEEecCCCC-eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeE
Confidence 3677888876 56555443322222222222 66777777742 458899988754322 11111111222
Q ss_pred EEEcCCCCEEEEEeC-C-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEE
Q 003106 686 VRFSPSMPRLATSSF-D-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWS 752 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg-----~V~iWD 752 (847)
+. -+++.++.|+. + ..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.++ .|.+||
T Consensus 145 ~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 145 LS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH-D-GRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp EE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-T-TEEEEEEEECSSSEEEEEEEEE
T ss_pred EE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE-C-CEEEEEeccCCCCccceEEEEE
Confidence 22 24556666665 2 468999998732 222211 11111122222 3 35777777554 588999
Q ss_pred CCCCceEE
Q 003106 753 INNGSCTR 760 (847)
Q Consensus 753 ~~~~~~~~ 760 (847)
+.+.+-..
T Consensus 219 ~~~~~W~~ 226 (315)
T 4asc_A 219 ITDNKWAP 226 (315)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 98875443
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.77 E-value=0.63 Score=48.86 Aligned_cols=136 Identities=9% Similarity=0.111 Sum_probs=73.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
..+.++|+.+. .++.+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.
T Consensus 90 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTN-QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCC-eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 45778888776 66665544333223333333 67777777644 3688899886543221 111111222333
Q ss_pred EcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCC
Q 003106 688 FSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINN 755 (847)
Q Consensus 688 fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~~ 755 (847)
+ +++.++.|+.+ ..|.+||+.+. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+.+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERN-E-WRMITAMNTIRSGAGVCVL-H-NCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCC-e-EeeCCCCCCccccceEEEE-C-CEEEEEeCCCCCCccceEEEEeCCC
Confidence 3 45666666654 45889998863 2 222211 11111122222 3 4577777654 5689999988
Q ss_pred CceE
Q 003106 756 GSCT 759 (847)
Q Consensus 756 ~~~~ 759 (847)
.+..
T Consensus 241 ~~W~ 244 (308)
T 1zgk_A 241 ETWT 244 (308)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7543
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.60 E-value=0.8 Score=57.66 Aligned_cols=211 Identities=10% Similarity=0.133 Sum_probs=123.7
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecC----CCCEEEE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRAS----TSKVICC 644 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~l 644 (847)
....|+|+++-..... ..+...|..|..-+. .-..+..|..|++... ..++..+..| ...|..-
T Consensus 86 ~~lQiFnl~~k~klks-------~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKA-------HTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred CeEEEeehHHhhhhcc-------cccCCCceEEEecCCCeeEEEcCCeEEEeccCCC--CccHHHHhcchhcccCeeEEe
Confidence 3457888866543332 123344555533333 3445778899999652 2344444444 4567788
Q ss_pred EEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC--C-CEEEEEeC---CCcEEEEECCC
Q 003106 645 HFSSDGKLLATGG-------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--M-PRLATSSF---DKTVRVWDADN 711 (847)
Q Consensus 645 ~fspdg~~Lasgs-------~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~--~-~~Lasgs~---Dg~V~iWD~~~ 711 (847)
+.+++.++++..| -.|.+-+|.++.+ .-..+.||......+.+..+ . ..|+.+.. .+.++|-++..
T Consensus 157 ~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred eeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 8888999877554 3478889988743 33567778766555554321 2 23333322 37899999865
Q ss_pred C--Cc------eEEEecc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCE
Q 003106 712 P--GY------SLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPC 779 (847)
Q Consensus 712 ~--~~------~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 779 (847)
. +. .+..+.. -.+-..++..++.-+ +++..+.-|.|.+||+.++.++..-+.....|...+.. ....
T Consensus 236 ~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g 314 (1630)
T 1xi4_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (1630)
T ss_pred CccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCc
Confidence 3 11 1111111 123344566666655 45566778999999999999987777666666555433 3345
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
+......|.|....
T Consensus 315 ~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 315 IIGVNRKGQVLSVC 328 (1630)
T ss_pred eEEEcCCceEEEEE
Confidence 55666666655443
No 337
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.57 E-value=0.12 Score=57.98 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHH-hhccchhhhHHhHHH
Q 003106 53 FEWWSVFWDIFIA-RTNEKHSEVAASYIE 80 (847)
Q Consensus 53 ~eWw~~fWdif~a-~~~~~~s~~~~sy~~ 80 (847)
.++|.++.+.+.. ...+...+.+...+.
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~eeal~~~~ 365 (449)
T 3iot_A 337 SAFWYAVRTAVINAASGRQTVDAALAAAQ 365 (449)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455555555432 223334444444333
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.14 E-value=1.8 Score=51.46 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=74.2
Q ss_pred cEEEEeccCCceeeEeE-E-----eecCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeE--EEccCCC
Q 003106 616 GGRGMDVSQGFSFKEAN-S-----VRASTSKVICCHFSSDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSS 681 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~-~-----l~~h~~~V~~l~fspdg~~Lasgs~Dg------~V~vwd~~~~~~~~--~l~~h~~ 681 (847)
.+.+||..+. .|..+. . +......-.++.+..++++++.||.++ .|.+||..+.+-.. .+.....
T Consensus 413 ~v~~yd~~~~-~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 413 EILQLSIHYD-KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CEEEEEECSS-CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred cEEEEECCCC-eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 3556676665 455544 2 111111222333322777888887543 57889988743322 1211111
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeC--C-----C
Q 003106 682 LITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDG--D-----G 746 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~--D-----g 746 (847)
. .+++...+++.++.|+.++ .|.+||+.+.. ...+.. ......++.+..+...+++.|+. + +
T Consensus 492 ~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 492 R-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp S-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred c-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 1 2233323677778887654 79999998732 222211 12222335556553557777765 2 4
Q ss_pred cEEEEECCCCc
Q 003106 747 EIRYWSINNGS 757 (847)
Q Consensus 747 ~V~iWD~~~~~ 757 (847)
.|.+||+.+..
T Consensus 569 ~v~~yd~~~~~ 579 (695)
T 2zwa_A 569 KAIIFKYDAEN 579 (695)
T ss_dssp EEEEEEECTTC
T ss_pred cEEEEEccCCc
Confidence 58899998876
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.67 Score=49.81 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=44.2
Q ss_pred CEEEEE-eCCCcEEEEECCCCceeEEEcc----CCCCeEE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCCceEE
Q 003106 651 KLLATG-GHDKKAVLWHTDTLKSKTNLEE----HSSLITD---VRF-S----PSMPRLATSSFDKTVRVWDADNPGYSLR 717 (847)
Q Consensus 651 ~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~---v~f-s----p~~~~Lasgs~Dg~V~iWD~~~~~~~~~ 717 (847)
..++.. +.||.|..+|..+|.....+.. ...++.. ..+ . ..+..+++|+.+|++...|+++ +..+.
T Consensus 57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-G~~~W 135 (339)
T 2be1_A 57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-GEIIS 135 (339)
T ss_dssp EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTT-CCEEE
T ss_pred cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC-CcEEE
Confidence 334343 5899999999988755544431 1222221 000 0 1355889999999999999999 77777
Q ss_pred Eec
Q 003106 718 TFM 720 (847)
Q Consensus 718 ~~~ 720 (847)
.+.
T Consensus 136 ~~~ 138 (339)
T 2be1_A 136 AFG 138 (339)
T ss_dssp EES
T ss_pred EEe
Confidence 775
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.83 E-value=0.55 Score=47.09 Aligned_cols=134 Identities=13% Similarity=-0.028 Sum_probs=79.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc------eeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----e
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLK------SKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----S 715 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~------~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~-----~ 715 (847)
.+.+|++...| +|++=.+.... ...++ ++ =..+++++|+|++.+.++ .+|.++-.+..+... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 66665554433 12222 22 246889999998875555 677766666543111 0
Q ss_pred EEEe-c-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-------EEEEeeCCceEEEEEecCCCEEEEEcCC
Q 003106 716 LRTF-M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-------TRVFKVESFCCWCVNAMNRPCLWDKLDA 786 (847)
Q Consensus 716 ~~~~-~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-------~~~~~~~~~~v~~~~~~~~~~l~~~~~~ 786 (847)
-..+ . +-. ...++.|+++|. |.++ .||.|.-|+-.+... ..+-...-..+.++.+.....||++. +
T Consensus 79 ~t~IG~~Gw~-~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d 153 (236)
T 1tl2_A 79 AKKIGNGGWN-QFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G 153 (236)
T ss_dssp CEEEECSCGG-GCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T
T ss_pred ccEecccccc-cceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C
Confidence 1111 0 111 147899999987 4434 479998887644221 12222233456888899999999999 7
Q ss_pred CcEEE
Q 003106 787 GDIQI 791 (847)
Q Consensus 787 g~i~i 791 (847)
+.++-
T Consensus 154 g~lyr 158 (236)
T 1tl2_A 154 QQFYK 158 (236)
T ss_dssp TEEEE
T ss_pred CcEEe
Confidence 77644
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.55 E-value=13 Score=39.79 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=18.1
Q ss_pred cceEEEecCCC-eEeecCCCeEEeC
Q 003106 556 KPLMMFGTDGA-GTLTSPSNQLWDD 579 (847)
Q Consensus 556 ~~~v~~s~dG~-~~~~~~~~~iWD~ 579 (847)
-..++|.|||+ .++++...+||-+
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~ 44 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHW 44 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEE
Confidence 46789999999 7777766666544
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.10 E-value=1.9 Score=46.08 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=39.3
Q ss_pred EEEEeccC-CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCCceeEE--Ec-cCCC
Q 003106 617 GRGMDVSQ-GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH-D---------KKAVLWHTDTLKSKTN--LE-EHSS 681 (847)
Q Consensus 617 v~vwd~~~-~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~-D---------g~V~vwd~~~~~~~~~--l~-~h~~ 681 (847)
+.++|+.+ ...++.+..+. .......++.+ ++++++.|+. + ..|.+||+.+.+-... +. ....
T Consensus 33 ~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~ 110 (357)
T 2uvk_A 33 WYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA 110 (357)
T ss_dssp EEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS
T ss_pred EEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc
Confidence 44566553 22455544433 11222222222 6777777776 2 4688999886543221 11 1111
Q ss_pred CeEEEEEcCCCCEEEEEeCC
Q 003106 682 LITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~D 701 (847)
...++. .+++.++.|+.+
T Consensus 111 ~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 111 GHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp SEEEEE--ETTEEEEEECCC
T ss_pred cceEEE--ECCEEEEEeCcC
Confidence 222233 356677777754
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.01 E-value=1.2 Score=46.79 Aligned_cols=134 Identities=7% Similarity=0.076 Sum_probs=68.9
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-------KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-------g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
+.++|..+. .+..+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +......-.++.
T Consensus 80 ~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSS-EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTT-EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred EEEEeCCCC-cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 677888776 66665444332222223333 67788888764 2478888876543322 111101111222
Q ss_pred EcCCCCEEEEEeC------CCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECC
Q 003106 688 FSPSMPRLATSSF------DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSIN 754 (847)
Q Consensus 688 fsp~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~ 754 (847)
.+++.++.|+. -..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||++
T Consensus 157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIH-K-GKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp --ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-T-TEEEEEEEEETTEEEEEEEEEETT
T ss_pred --ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEE-C-CEEEEEcCcCCCCccceEEEEECC
Confidence 24556666653 2358999998732 222211 11111122222 3 3566677643 357789998
Q ss_pred CCceE
Q 003106 755 NGSCT 759 (847)
Q Consensus 755 ~~~~~ 759 (847)
+.+..
T Consensus 231 ~~~W~ 235 (318)
T 2woz_A 231 TNKWE 235 (318)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 77543
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.61 E-value=1.6 Score=46.65 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=25.8
Q ss_pred CcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHD 659 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~D 659 (847)
..+.+||+.+. .++.+..+. .......++. .++++++.|+.+
T Consensus 86 ~~v~~yd~~~~-~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 86 NDVHKYNPKTN-SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp CCEEEEETTTT-EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred ccEEEEeCCCC-cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 56788998887 666665544 2222222333 477888888865
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.07 E-value=4.4 Score=51.22 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=85.8
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
...|.|.|+..+... ..+.+ .--+.-.+|..+.||.=. ..++.|||+++...+..+.-.. .|.--+|-.+.
T Consensus 47 ~~~vvIidl~~~~~~-~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP-IRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCc-ccccc-----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-
Confidence 337888888875221 11111 112334567667666654 6789999999887777665433 46566676443
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEeccC----CCCeEEEEEecCCCeEEEEEe------CCCcEEEEECCCC
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMGH----SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNG 756 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h----~~~V~sl~fsp~g~~ll~s~s------~Dg~V~iWD~~~~ 756 (847)
.|+..+ +..|..|++.....+++.|..| ...|..-..+++.++++++|- -.|.+.+|.++.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 444444 5789999997545566666655 456777788899998887764 2477888887754
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.00 E-value=5.7 Score=44.36 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCEEEEEEcCC---CCEEEEEeC-------------CCcEEEEECCCC--c-----eeE-EEcc-CCCCeEEEEEcCCC
Q 003106 638 TSKVICCHFSSD---GKLLATGGH-------------DKKAVLWHTDTL--K-----SKT-NLEE-HSSLITDVRFSPSM 692 (847)
Q Consensus 638 ~~~V~~l~fspd---g~~Lasgs~-------------Dg~V~vwd~~~~--~-----~~~-~l~~-h~~~I~~v~fsp~~ 692 (847)
...+..|+|+|| +.+|+.+.. ...|.-|+.+.. . .+. .+.. .......|+|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 466889999995 555544432 134555554321 1 111 1221 12347899999999
Q ss_pred CEEEEEeCC--------------------------------CcEEEEECCCCCc-----------eEEEe-ccCCCCeEE
Q 003106 693 PRLATSSFD--------------------------------KTVRVWDADNPGY-----------SLRTF-MGHSASVMS 728 (847)
Q Consensus 693 ~~Lasgs~D--------------------------------g~V~iWD~~~~~~-----------~~~~~-~~h~~~V~s 728 (847)
.++++.+.. |.|.-+|.+ +. ....+ .+| ..+..
T Consensus 156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d--G~ip~~Npf~~~~~~ei~a~G~-RNp~g 232 (454)
T 1cru_A 156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD--GSIPKDNPSFNGVVSHIYTLGH-RNPQG 232 (454)
T ss_dssp CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT--SCCCTTCCEETTEECSEEEBCC-SEEEE
T ss_pred eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC--CCCCCCCCCCCCCcceEEEECC-CCcce
Confidence 876665532 233333333 22 11222 345 35788
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|+|+++|..+++-.+.++.-.|.-++.|
T Consensus 233 la~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 233 LAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp EEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred EEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 9999987644444455555556555543
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.76 E-value=20 Score=38.54 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=71.6
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCceeEEEcc--------------CCCCeEEEEEcCC--CCEEE
Q 003106 638 TSKVICCHFSS-DGKLLATGGHDK----KAVLWHTDTLKSKTNLEE--------------HSSLITDVRFSPS--MPRLA 696 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~~Lasgs~Dg----~V~vwd~~~~~~~~~l~~--------------h~~~I~~v~fsp~--~~~La 696 (847)
...|.+|++.| +...|..++..| .|...+ +.++....+.. ....|.+|++.|. ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 334444444444 343332 33333222211 1125888999873 45666
Q ss_pred EEeCCCcEEEEECCCCCceEEEecc-------------------CCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~-------------------h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++..++.|... ...+.....+.. ....|.+|.++|.. ..+++... ++.|...+ ..+
T Consensus 133 ~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DAG 208 (394)
T ss_dssp EEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-STT
T ss_pred EEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCC
Confidence 66656655544 322333333321 12357899999843 34554433 34343332 122
Q ss_pred ceEEEEeeC-------------CceEEEEEecCC--CEEEEEcCCC
Q 003106 757 SCTRVFKVE-------------SFCCWCVNAMNR--PCLWDKLDAG 787 (847)
Q Consensus 757 ~~~~~~~~~-------------~~~v~~~~~~~~--~~l~~~~~~g 787 (847)
+.-..+... ...+.++..+.. ..+|.+...+
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222222110 123666665543 6788876655
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.57 E-value=25 Score=37.79 Aligned_cols=141 Identities=10% Similarity=0.012 Sum_probs=70.2
Q ss_pred CCEEEEEEcC-C-CCEEEEEeCCCcEEEEECCCCceeEEEcc-------------------CCCCeEEEEEcCC-CCEEE
Q 003106 639 SKVICCHFSS-D-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-------------------HSSLITDVRFSPS-MPRLA 696 (847)
Q Consensus 639 ~~V~~l~fsp-d-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------------------h~~~I~~v~fsp~-~~~La 696 (847)
..|.+|++.| + ...|+.++.++.|...+ +.++....+.. ....|.+|.++|. ...|+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3588899987 3 45566666666555543 22333222211 1235889999984 44565
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccC-------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGH-------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h-------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.+..++.|... ...+.....+... ...|.+|.+++.....|+.+...+ |...+-. ++.-..+.
T Consensus 194 vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~ 269 (394)
T 3b7f_A 194 IGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIG 269 (394)
T ss_dssp EEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGG
T ss_pred EEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECC
Confidence 55545544433 2223333332210 124889999987433444555443 4444322 33222222
Q ss_pred e--CC---ceEEEEEec--CCCEEEEEc
Q 003106 764 V--ES---FCCWCVNAM--NRPCLWDKL 784 (847)
Q Consensus 764 ~--~~---~~v~~~~~~--~~~~l~~~~ 784 (847)
. .. ..+.++..+ +...+|.+.
T Consensus 270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 270 DAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp GGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 1 11 234455544 455677664
No 349
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.61 E-value=26 Score=36.74 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=102.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcee-------E--EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---C---
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSK-------T--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P--- 712 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~-------~--~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~---~--- 712 (847)
++..++++.+.+|.|+-..+...+.. . .++ ..+.+..+........++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46778999999999998876543221 1 122 234455655555666788888899877766532 1
Q ss_pred --Cce---EEEeccCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 --GYS---LRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 --~~~---~~~~~~h~~~V~sl~fsp---~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+.. ...+. -...|.++...+ +..+ |+..+.+|.++...+.. |.....+......+........
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~-ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAY-LLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCE-EEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCE-EEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 110 01122 223455554332 2343 44778899999988743 2222233333344444444556
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCc-cccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..++..+..|.+..+........-....+....... ...+-.+.... .+..|++.+..|.++...+.-|
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHh
Confidence 678888888888777644321111111111110000 00011111111 3456778888998888877543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.77 E-value=5.6 Score=47.08 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEE-----ccCCCCeEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNL-----EEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l-----~~h~~~I~~v 686 (847)
-..+.+||..+. .|+.+..+......-.++.+ .++++++.||.++ .|.+||..+.+-...- ........++
T Consensus 467 ~~dv~~yd~~t~-~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 467 LSDNWIFDMKTR-EWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp CCCCEEEETTTT-EEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred cccEEEEeCCCC-cEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence 345788998887 67766554332222223332 3788888888655 7999998875432211 1112222335
Q ss_pred EEcCC-CCEEEEEeC--C-----CcEEEEECCCCCc----eEEEecc---CCCCeEEEEEecCCCeEEEEEeCC------
Q 003106 687 RFSPS-MPRLATSSF--D-----KTVRVWDADNPGY----SLRTFMG---HSASVMSLDFHPNKDDLICSCDGD------ 745 (847)
Q Consensus 687 ~fsp~-~~~Lasgs~--D-----g~V~iWD~~~~~~----~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~D------ 745 (847)
.+..+ ++.++.|+. + ..|.+||+.+... ....+.. ....-.+++...++ .+++.|+.+
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCC
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCC
Confidence 55555 556666665 2 3588999987431 0111111 11111223333323 466677642
Q ss_pred --CcEEEEECCCCceE
Q 003106 746 --GEIRYWSINNGSCT 759 (847)
Q Consensus 746 --g~V~iWD~~~~~~~ 759 (847)
..|.+||+.+.+..
T Consensus 624 ~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 624 RTNSIISLDPLSETLT 639 (695)
T ss_dssp TTTSEEEEETTTTEEE
T ss_pred CCCeEEEEECCCCeEE
Confidence 45888888877543
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.74 E-value=4.6 Score=45.89 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-----------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 682 LITDVRFSPSMPRLATSS-FDKTVRVWDADNP-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~-----------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
....|.++|||+++++++ .+.+|.|+|++.. ..++..-..-.-.....+|.++| +.+.|...|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 345788999999987766 5899999999841 11122111234457889999998 5666777899999
Q ss_pred EEECCC
Q 003106 750 YWSINN 755 (847)
Q Consensus 750 iWD~~~ 755 (847)
.|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999964
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.02 E-value=49 Score=39.01 Aligned_cols=194 Identities=8% Similarity=0.014 Sum_probs=96.5
Q ss_pred eEEEecCCCeEee----cCCC----eEEeCCCCchhhccccccccC-C---CCCceEEeeecCC-------------CCC
Q 003106 558 LMMFGTDGAGTLT----SPSN----QLWDDKDLELRADMDRLVEDG-S---LDDNVESFLSHDD-------------TDP 612 (847)
Q Consensus 558 ~v~~s~dG~~~~~----~~~~----~iWD~~~~~~~~~~~~~~~~g-~---~d~~v~~~~s~d~-------------t~~ 612 (847)
..+++|||++++. ++++ +++|+.++++.++.-.-...+ . ....+..|...++ ..+
T Consensus 134 ~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 134 VSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp EEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred eeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 4458889887655 3444 789999998775321100000 0 0001212221111 222
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEEccCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGK-----LLATGGHD---KKAVLWHTDT--LKSKTNLEEHSS 681 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~-----~Lasgs~D---g~V~vwd~~~--~~~~~~l~~h~~ 681 (847)
....|+.|.+-+... .-...+.+.... -..+..+.|++ .+++.+.| ..+.+.|++. ++. ..+.....
T Consensus 214 ~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 291 (711)
T 4hvt_A 214 YPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD 291 (711)
T ss_dssp SBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT
T ss_pred CCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc
Confidence 345677887766521 222233333333 33455666776 24544423 3456666653 332 23322222
Q ss_pred CeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC------CceEEE-ec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 682 LITDVRFSPSMPRLATS----------SFDKTVRVWDADNP------GYSLRT-FM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasg----------s~Dg~V~iWD~~~~------~~~~~~-~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
. .+..+.++.+++.. ...+.|.+.|+.+. ...... +. .....+..+.|..+ .++++..
T Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~ 367 (711)
T 4hvt_A 292 A--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATY 367 (711)
T ss_dssp C--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEE
T ss_pred c--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEE
Confidence 1 12233345444422 24677999998762 122333 32 22345677888765 4776777
Q ss_pred CCCc--EEEEECCCCc
Q 003106 744 GDGE--IRYWSINNGS 757 (847)
Q Consensus 744 ~Dg~--V~iWD~~~~~ 757 (847)
.++. |.++|+.++.
T Consensus 368 ~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ETTEEEEEEECEETTE
T ss_pred ECCEEEEEEEECCCCc
Confidence 7764 6677776664
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.95 E-value=6.8 Score=44.56 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=82.0
Q ss_pred cEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC------ce-------eEEEccCC
Q 003106 616 GGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTL------KS-------KTNLEEHS 680 (847)
Q Consensus 616 ~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~------~~-------~~~l~~h~ 680 (847)
.+.+.|...... ...+..+-.-......|.++|||++++.++. +.+|.|+|+++. +. +...+ -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 477888765100 0112112122334557899999999888765 789999998742 11 12222 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------CceEEEeccCCCCeEEEEE------ecCCCeEEEEE--e
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNP---------GYSLRTFMGHSASVMSLDF------HPNKDDLICSC--D 743 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~---------~~~~~~~~~h~~~V~sl~f------sp~g~~ll~s~--s 743 (847)
......+|.++|....|.-.|..|..|++... ...+..+.-|-.. -.+.- .++|++|++-+ +
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~s 456 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFS 456 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCC
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccc
Confidence 45678999999944444557999999999752 2345555544332 22222 46777665332 3
Q ss_pred CCCcE----------EEEECCCCc
Q 003106 744 GDGEI----------RYWSINNGS 757 (847)
Q Consensus 744 ~Dg~V----------~iWD~~~~~ 757 (847)
.|+.+ .++|+...+
T Consensus 457 kdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 457 KDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp TTSSCCCSSSCCEEEEEEECSSSS
T ss_pred cccCcCCCCCCCCcceeEecCCCc
Confidence 34433 677776543
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.42 E-value=46 Score=35.11 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=85.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CC-------
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLK-------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NP------- 712 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~-------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~--~~------- 712 (847)
+..++++++.+|.|+...+.... ....++. .+.+..+........|+..+.+|.+..+.+. .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 57899999999999998865422 2223433 3556666555566788888889998888776 21
Q ss_pred -CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-------ceEEEEe--e-CCceEEEEEecCCCEEE
Q 003106 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRVFK--V-ESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-------~~~~~~~--~-~~~~v~~~~~~~~~~l~ 781 (847)
+.....+. ....|.++...+.+..+ +.++..|.++.-.+... +-+..++ . ....+.+........++
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~l-l~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYL-LVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEE-EEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEE-EEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 11111122 24557666665554544 47788999998876421 2222222 2 22334444344555666
Q ss_pred EEcCCCcEEEEcC
Q 003106 782 DKLDAGDIQISDS 794 (847)
Q Consensus 782 ~~~~~g~i~i~d~ 794 (847)
..+..|.+..+..
T Consensus 265 l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 265 AVTSGGGVIRTAA 277 (327)
T ss_dssp EEEGGGCEEEEEG
T ss_pred EEcCCCeEEEEeh
Confidence 7777777666653
No 355
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=83.32 E-value=47 Score=34.67 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=99.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeE---------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---CCC---
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKT---------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP--- 712 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~---------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~---~~~--- 712 (847)
|+..++++.+.+|.|+--.+...+..+ .++. .+.+..+........|+..+..|.++-+.+ ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 356678899999999887765433211 1222 344555555555667777778888665544 321
Q ss_pred --CceEE---EeccCCCCeEEEEEe---cCCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 --GYSLR---TFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 --~~~~~---~~~~h~~~V~sl~fs---p~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+..+. .+. ....|.++..- .++. .++..+.+|.++...+.. |.....+..+...+........
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 11111 122 23456555432 2334 345788899999997742 2222223334444444444556
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCC-ccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE-IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..+...+..|.+..+........-....+...... ....+..+.... ++..|++.+..|.++-..+.-|
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~ 227 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEY 227 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGS
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHh
Confidence 67888888888777764332211111111111000 000111111111 2346888888888887776433
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=83.30 E-value=42 Score=36.18 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=85.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC---------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCCC--
Q 003106 647 SSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD---ADNP-- 712 (847)
Q Consensus 647 spdg~~Lasgs~Dg~V~vwd~~~---------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD---~~~~-- 712 (847)
-++..++++.+.+|.|+--.+.. +.....++ ..+.+..+........|+..+..|.++-+. +...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46788999999999999865432 12222333 355677776666677788788888766554 3321
Q ss_pred ---CceEE---EeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 ---GYSLR---TFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 ---~~~~~---~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+..+. .+. ....|.++....+ ....|+.++..|.++...+.. |.....++.....+........
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 11111 122 2345655544321 223455888899999988643 2222233333444544444555
Q ss_pred CEEEEEcCCCcEEEEcC
Q 003106 778 PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~ 794 (847)
..++..+..|.+..+..
T Consensus 162 ~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGE 178 (370)
T ss_dssp CEEEEEETTSEEEEEEG
T ss_pred ceEEEEeCCCeEEEEEc
Confidence 67777888888777763
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.17 E-value=16 Score=37.80 Aligned_cols=143 Identities=17% Similarity=0.073 Sum_probs=71.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|..|+...+ ..++. . ||.|+.|-......+..-..-...|..|+...+ +.+.-. ||.|+.|-....+..- ..
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VP 136 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CC
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CC
Confidence 4555555433 23333 4 888888876532111111111245777766533 444445 9999999876533321 11
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
......|..|+.-.. +.+ .-. ||.|..|-......+..-......+..++.-....+ .. ++|.++.|-..
T Consensus 137 ~~~~~~i~~i~~G~~--~~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n 206 (282)
T 3qhy_B 137 AEAQSGVTALDGGVY--TAL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL-KDGKVIAWGDN 206 (282)
T ss_dssp GGGGSSEEEEEECSS--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred ccCCCCeEEEEcccC--EEE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence 112345766665433 223 234 789999976542111100001123444443333333 33 58888888643
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.53 E-value=39 Score=35.63 Aligned_cols=196 Identities=6% Similarity=-0.075 Sum_probs=100.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---CCC-----Cce
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP-----GYS 715 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~---~~~-----~~~ 715 (847)
++..++++.+.+|.|+--.+... .....++. .+.+..+........|+..+..|.++-+.+ ... +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56778899999999987765421 11112333 345555555556667888888888665544 221 111
Q ss_pred EE---EeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCC--------CceEEEEeeCCceEEEEEecCCCEEE
Q 003106 716 LR---TFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINN--------GSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 716 ~~---~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
+. .+. -...|.++....+ +. .++.++.+|.++...+.. |.....++.....+..........++
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 11 121 2334555433332 33 455788999999998742 22222333333444444445566788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCc-cccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+..|.+..+........-....+....... ...+..+.....+...|++.+..|..+...+.-
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 88888888777644322111111111111100 001111111121222677778888877766543
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.88 E-value=17 Score=40.56 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---ceeEEEc---c------CCCCeEEEEEcCC---CCEEEEE-eC-
Q 003106 639 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---KSKTNLE---E------HSSLITDVRFSPS---MPRLATS-SF- 700 (847)
Q Consensus 639 ~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~---~~~~~l~---~------h~~~I~~v~fsp~---~~~Lasg-s~- 700 (847)
..-+.|+|.|||. +|+++...|.|++++.+.. ..+..+. . .......|+|+|+ ..+|+.. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 5556678899999975422 1222222 1 1356889999997 2344332 21
Q ss_pred -C----------CcEEEEECCCC---------CceEEEec--cCCCCeEEEEEecCCCeEEEEEe
Q 003106 701 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 701 -D----------g~V~iWD~~~~---------~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
+ ..|.-|.+... .+.+..+. ........|.|.|||. |+++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence 2 13444655421 12222222 1123467899999996 444544
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.11 E-value=9 Score=47.10 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
..|.+++..++..+|+|-+.|+++|||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888899999999999999999999999988753
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.07 E-value=29 Score=42.52 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|.+++..++..++++.+.|+++|||++.+ +.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeee
Confidence 577888888888999999999999999998 6776654
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.02 E-value=16 Score=43.00 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
..|.|+.+ +..+|++-+.|+++|+||++++.++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666555 478999999999999999999998877653
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.82 E-value=75 Score=32.54 Aligned_cols=154 Identities=10% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 638 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
...|..+.... ++.+++..+.+|.|+...+.... ....++ ..+.+..+........|+..+.+|.+..+++.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34455553321 56789999999999999875432 122233 23566666666666788889999998888764
Q ss_pred CC--------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEec
Q 003106 711 NP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 711 ~~--------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~ 775 (847)
.- +.....+.. ...|.++....++..++ ..+..|.++...+.. ++-+..+......+.+....
T Consensus 146 eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll-~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~ 223 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLL-VITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIK 223 (276)
T ss_dssp GSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEE-EEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEES
T ss_pred hCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEE-EEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeC
Confidence 31 111112222 35566665555545444 777889999887742 22233332223333333334
Q ss_pred CCCEEEEEcCCCcEEE--EcC
Q 003106 776 NRPCLWDKLDAGDIQI--SDS 794 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i--~d~ 794 (847)
....++..+..|.+.. ++.
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEG
T ss_pred CCCEEEEEcCCCeEEEeeeCH
Confidence 4456677777777766 653
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=75.54 E-value=94 Score=33.53 Aligned_cols=168 Identities=8% Similarity=0.062 Sum_probs=91.7
Q ss_pred cEEEEeccCC--ceeeEeEE---eecCCCCEEEEEEc---CC----CCEEEEEe-CCCcEEEEECCCCceeEEEc-----
Q 003106 616 GGRGMDVSQG--FSFKEANS---VRASTSKVICCHFS---SD----GKLLATGG-HDKKAVLWHTDTLKSKTNLE----- 677 (847)
Q Consensus 616 ~v~vwd~~~~--~~~~~~~~---l~~h~~~V~~l~fs---pd----g~~Lasgs-~Dg~V~vwd~~~~~~~~~l~----- 677 (847)
++-+||+.++ ...+.+.. +......+.++++. ++ +.++..+. .+.-|.|+|+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4556777765 33222211 01123567888887 22 33444443 46789999999887766542
Q ss_pred ---------cC----CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC-----C--CceEEEeccCC---CCeEEEE
Q 003106 678 ---------EH----SSLITDVRFSPS----MPRLATSSFDKTVRVWDADN-----P--GYSLRTFMGHS---ASVMSLD 730 (847)
Q Consensus 678 ---------~h----~~~I~~v~fsp~----~~~Lasgs~Dg~V~iWD~~~-----~--~~~~~~~~~h~---~~V~sl~ 730 (847)
+. ...|..|+++|+ ++.|+-+...+. ++|.+.+ . ...+..+ |.. +....++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 00 246888999998 777776665542 4444421 1 1122222 222 3344566
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCC-C---ceEEEEeeCCc--eEEEEEecCCCEEEEEcC
Q 003106 731 FHPNKDDLICSCDGDGEIRYWSINN-G---SCTRVFKVESF--CCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 731 fsp~g~~ll~s~s~Dg~V~iWD~~~-~---~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~ 785 (847)
+++....++++--..+.|..|+..+ . .....+..... .+..+....+..+|..+.
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 7644445776777788999999986 1 22233332223 344555555555665543
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.45 E-value=41 Score=34.55 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=55.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|..|+.... ..++. . ||.|+.|-......+..-......|..|+..... .++. . ||.|+.|-....+.. ...
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gql-g~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQT-TVP 97 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTT-CCC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCC-CCC
Confidence 4555555432 22333 4 8888888755321111111122357777665332 2333 4 999999987653322 111
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
..-...|..|+.-.. ..+.-. ||.|..|-...
T Consensus 98 ~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDS 129 (282)
T ss_dssp GGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCT
T ss_pred cccCCCeEEEECcCC---EEEEEe-CCeEEEecCCC
Confidence 112346777776644 222344 89999997654
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.00 E-value=69 Score=33.75 Aligned_cols=196 Identities=8% Similarity=-0.040 Sum_probs=99.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-------eeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE---ECCCC-----C
Q 003106 650 GKLLATGGHDKKAVLWHTDTLK-------SKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNP-----G 713 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~-------~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW---D~~~~-----~ 713 (847)
...+++.+.+|.|+--.+++.+ -+..+. ...+.+..+........|+.-+..|.++.. ++... +
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 4567888888988876543211 111111 123456665555556677777777775544 44321 1
Q ss_pred ceEEEec--cCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCC-------ceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 714 YSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNG-------SCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 714 ~~~~~~~--~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~-------~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
..+..+. .....|.++..-.+ .+..++.++.+|.|+...+... .....++.....+.+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2111111 12345555544332 2335668899999999887542 22223444444555555556667888
Q ss_pred EcCCCcEEEEcCC--cccceeeecccccCCCC-ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 KLDAGDIQISDSL--FINANIFCGLGWYGSDE-IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 ~~~~g~i~i~d~~--~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+..|.+..+... .+...-....+...... ....+..+.... .+..|+..+..|.++.-.+.-
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGG
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHH
Confidence 8888888777654 32211111111110000 000011111111 345788888999888776543
No 367
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=68.35 E-value=2.9 Score=35.22 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCC
Q 003106 11 MLDVYIHDYLVKRDLKASAQAFQAEGKVSSDP 42 (847)
Q Consensus 11 ~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~ 42 (847)
-+|-.||-||...|+..+|-+|.+|.++...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 47889999999999999999999999887654
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=68.29 E-value=78 Score=37.29 Aligned_cols=114 Identities=8% Similarity=0.029 Sum_probs=61.0
Q ss_pred EEEEE-EcCCCCEEEEE-e----CCCcEEEEECCCCceeE-EEc-cCCC------CeEEEEEcCCCCEEEEEe-------
Q 003106 641 VICCH-FSSDGKLLATG-G----HDKKAVLWHTDTLKSKT-NLE-EHSS------LITDVRFSPSMPRLATSS------- 699 (847)
Q Consensus 641 V~~l~-fspdg~~Lasg-s----~Dg~V~vwd~~~~~~~~-~l~-~h~~------~I~~v~fsp~~~~Lasgs------- 699 (847)
...+. ++||+++++.+ | +-..|+++|+.+++.+. .|. .-+. ....++|. +.+.++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 33444 88899887764 2 22479999999988763 122 0000 01234676 334444332
Q ss_pred ----CCCcEEEEECCCCC-ceEEEeccCCCCe-EEEEEecCCCe----EEEEEeCC---CcEEEEECCC
Q 003106 700 ----FDKTVRVWDADNPG-YSLRTFMGHSASV-MSLDFHPNKDD----LICSCDGD---GEIRYWSINN 755 (847)
Q Consensus 700 ----~Dg~V~iWD~~~~~-~~~~~~~~h~~~V-~sl~fsp~g~~----ll~s~s~D---g~V~iWD~~~ 755 (847)
....|+.|.+-++- .....|.+....+ .++..+.+++. ++++.+.+ ..+.+.|...
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 23569999887642 2344454433333 34555666663 45554422 4556666653
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.27 E-value=1.9e+02 Score=33.94 Aligned_cols=37 Identities=8% Similarity=0.282 Sum_probs=28.7
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.|.++.+. .. ++++-+.|+++|+||++++.++.+...
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35555553 33 666899999999999999999988765
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.52 E-value=1.5e+02 Score=31.71 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=74.2
Q ss_pred CEEEEEeCCCcEEEEECCCC--------c---eeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc----
Q 003106 651 KLLATGGHDKKAVLWHTDTL--------K---SKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY---- 714 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~--------~---~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~---- 714 (847)
...+.-..||.|+.|-.... . ....+.. ....|..++++....+.+....||.|+.|-....+.
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 34445567788888854311 1 1111221 223456677777777888888899999996543111
Q ss_pred ---e---EEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC---------ceEE--EEee-CCceEEEEEec
Q 003106 715 ---S---LRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---------SCTR--VFKV-ESFCCWCVNAM 775 (847)
Q Consensus 715 ---~---~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~---------~~~~--~~~~-~~~~v~~~~~~ 775 (847)
. ...+.. ....|..|+.-.. ..+....||.|..|-.... .... .+.. ....+..++.-
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGGA---HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCccCcCCeEecccCCCeEEEEEeCcC---eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 0 111111 1225666665432 3445667999999965421 1111 1111 12234444432
Q ss_pred -CCCEEEEEcCCCcEEEEcC
Q 003106 776 -NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 776 -~~~~l~~~~~~g~i~i~d~ 794 (847)
.....+....++.+..|-.
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp CSSCEEEEEETTTEEEEEEC
T ss_pred CCCcEEEEEccCCEEEEEeC
Confidence 2345566778888888863
No 371
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=65.50 E-value=2.4 Score=35.55 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCC
Q 003106 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVSSD 41 (847)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~ 41 (847)
+-|+.=|++||..+++.+++.||.+|..++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999876643
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.38 E-value=1.3e+02 Score=31.18 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=84.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------Cce---eEEEccCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT---------LKS---KTNLEEHSSLITDVRFSP---SMPRLATSSFDKT 703 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---------~~~---~~~l~~h~~~I~~v~fsp---~~~~Lasgs~Dg~ 703 (847)
+.+..+........|+..+..|.++-+.... |.. ...+.. ...|.++...+ +..+|+..+.+|.
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 3444444444556777778888877766431 111 111222 23455543332 4568889999999
Q ss_pred EEEEECCCC------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------CceEEEEeeCCce
Q 003106 704 VRVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVFKVESFC 768 (847)
Q Consensus 704 V~iWD~~~~------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---------~~~~~~~~~~~~~ 768 (847)
++...+..- +.....+.. .+.+..+........++ ..+.+|.+..+.+.. |.....+......
T Consensus 126 ~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~-l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~v 203 (312)
T 1suu_A 126 IARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVI-CLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 203 (312)
T ss_dssp EEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCE
T ss_pred EEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEE-EEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEE
Confidence 999887531 222223333 45566665554444444 677789988887743 1122223222333
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
+.+........+...+..|....+..
T Consensus 204 v~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 204 VKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEECCCCeEEEEECCCceEEEEH
Confidence 33333334556778888888777664
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=63.02 E-value=55 Score=39.09 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccC-------CCCeEEEEEcCCC-CEEEEEeCCCc----E
Q 003106 638 TSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSM-PRLATSSFDKT----V 704 (847)
Q Consensus 638 ~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-------~~~I~~v~fsp~~-~~Lasgs~Dg~----V 704 (847)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|+++|.. +.++.+..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999994 46677777777776665 334443333322 2469999999853 45555543322 4
Q ss_pred EEEECCCCCceEEEeccC---------CCCeEEEEEecCCCeEEEEEeCC
Q 003106 705 RVWDADNPGYSLRTFMGH---------SASVMSLDFHPNKDDLICSCDGD 745 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h---------~~~V~sl~fsp~g~~ll~s~s~D 745 (847)
.||-..+.+.....+..- ...+..|+++|.....++.+...
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~ 142 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT 142 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSS
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEecc
Confidence 455544445544443210 11356788888655455555533
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.31 E-value=1.4e+02 Score=30.41 Aligned_cols=151 Identities=10% Similarity=-0.004 Sum_probs=84.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEE---ECCCCceeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC-
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLW---HTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP- 712 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vw---d~~~~~~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~- 712 (847)
+.|.++.......+|+.-+.+|.++-- ++........+. ....|..+.. . +..+++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 455555555555566666777877643 332221111132 3455666644 4 4678999999999999987542
Q ss_pred ----CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------CceEEEEeeCCceEEEEEecCCCE
Q 003106 713 ----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVFKVESFCCWCVNAMNRPC 779 (847)
Q Consensus 713 ----~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---------~~~~~~~~~~~~~v~~~~~~~~~~ 779 (847)
+.....++. .+.+..+........++ ..+.+|.+..+++.. |.....+......+..+.......
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence 221222332 34565555554545454 667788888776532 212222333333344444445557
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
++..+..|.++...
T Consensus 180 ll~~T~~G~~kr~~ 193 (276)
T 3no0_A 180 LLVITAKGRVKKIS 193 (276)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEeCCCcEEEeE
Confidence 77888888877665
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=58.97 E-value=98 Score=36.49 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccC-------CCCeEEEEEcCC-CCEEEEEeCC-------C
Q 003106 639 SKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPS-MPRLATSSFD-------K 702 (847)
Q Consensus 639 ~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-------~~~I~~v~fsp~-~~~Lasgs~D-------g 702 (847)
+.|.+|+|+|+ ...|+.+...+.|..++- .++.-..+..+ ...|.+|+++|. .+.|+.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 38999999995 356666776677766653 34443333322 245999999984 3445444321 1
Q ss_pred cEEEEECCCCCceEEEec-cCC--------CCeEEEEEecCCCeEEEEEe
Q 003106 703 TVRVWDADNPGYSLRTFM-GHS--------ASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~-~h~--------~~V~sl~fsp~g~~ll~s~s 743 (847)
...||--.+.+.....+. ... ..+.+|+++|....+|+.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 355666555454433332 111 13467999987554554555
No 376
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.20 E-value=2e+02 Score=30.88 Aligned_cols=122 Identities=6% Similarity=0.012 Sum_probs=68.6
Q ss_pred CCCcEEEEeccCCceeeEeEEe-----------ecC----CCCEEEEEEcCC----CCEEEEEeCCCcEEEEECC-----
Q 003106 613 RDAGGRGMDVSQGFSFKEANSV-----------RAS----TSKVICCHFSSD----GKLLATGGHDKKAVLWHTD----- 668 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l-----------~~h----~~~V~~l~fspd----g~~Lasgs~Dg~V~vwd~~----- 668 (847)
....+-|+|+.++..++..... .+. ...|..|+++|+ ++.|.-+.-.+ -++|.+.
T Consensus 179 ~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~ 257 (381)
T 3q6k_A 179 LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELK 257 (381)
T ss_dssp TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHS
T ss_pred CCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhh
Confidence 4567889999988666654211 111 247889999997 77777766544 2333322
Q ss_pred C---CceeEEEccCC---CCeEEEEEc-CCCCEEEEEeCCCcEEEEECCC-CC--ceEEEecc--CCCCeEEEEEecCCC
Q 003106 669 T---LKSKTNLEEHS---SLITDVRFS-PSMPRLATSSFDKTVRVWDADN-PG--YSLRTFMG--HSASVMSLDFHPNKD 736 (847)
Q Consensus 669 ~---~~~~~~l~~h~---~~I~~v~fs-p~~~~Lasgs~Dg~V~iWD~~~-~~--~~~~~~~~--h~~~V~sl~fsp~g~ 736 (847)
. ...+..+ +.. ..-..+++. .+|..+++--....|.+|+..+ .- .....+.. .-..+..+.+..+|.
T Consensus 258 ~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 258 QKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG 336 (381)
T ss_dssp STTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC
T ss_pred CcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe
Confidence 1 1222222 222 233456675 5676666666788999999875 21 12233221 223456666666654
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.03 E-value=73 Score=39.80 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=29.8
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.+.+++..++.. ++++-+.|+++||||+.++.|+.+..
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 344556666655 55688999999999999999998865
No 378
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=55.60 E-value=2.7e+02 Score=31.57 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=55.0
Q ss_pred cEEEEECCCCceeEEE--ccCC-----------CCeEEEEEcCCCC-EEEEEe----CCCcEEEEECCCCCceEEEeccC
Q 003106 661 KAVLWHTDTLKSKTNL--EEHS-----------SLITDVRFSPSMP-RLATSS----FDKTVRVWDADNPGYSLRTFMGH 722 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l--~~h~-----------~~I~~v~fsp~~~-~Lasgs----~Dg~V~iWD~~~~~~~~~~~~~h 722 (847)
.|..||.+.+++.... .... ..+.-.++.-||+ .|+.|+ .||++ +|... .+|
T Consensus 293 ~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~---------~gH 362 (591)
T 2zux_A 293 MLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG---------LGH 362 (591)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS---------CCC
T ss_pred EEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC---------CCC
Confidence 4788888777654333 2110 1334444555654 344333 34433 44432 389
Q ss_pred CCCeEEEEEecCCC--eEEEEEeCCC----cEEEEECCCCceEEEEeeC
Q 003106 723 SASVMSLDFHPNKD--DLICSCDGDG----EIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 723 ~~~V~sl~fsp~g~--~ll~s~s~Dg----~V~iWD~~~~~~~~~~~~~ 765 (847)
.+.+...+|.|+.. .++ .|..++ -..+.|.++|+.+..+...
T Consensus 363 GDa~hv~dldP~r~GlEv~-~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 363 GDALHTGDLDPGRPGLEVF-QVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp CSCEEEECCCTTSSSCEEE-EECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCeeEEeecCCCCCCcEEE-EEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 99999999999853 344 555441 3557899999988776543
No 379
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=53.84 E-value=2.4e+02 Score=30.33 Aligned_cols=149 Identities=9% Similarity=-0.041 Sum_probs=76.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CC-Cce---------eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DT-LKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~--~~-~~~---------~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..|..|+... ...+.-..||.|+.|-. .. +.+ .-........|..|+.. ..+.+.-..||.|+.
T Consensus 127 ~~i~~va~G~--~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 202 (423)
T 3mvd_K 127 GKALCISAGD--SHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFT 202 (423)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEcCc--CeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEE
Confidence 3566666543 34455567899999975 21 211 11111123346666644 346666678999999
Q ss_pred EECCCCCc----------------------eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--------
Q 003106 707 WDADNPGY----------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------- 756 (847)
Q Consensus 707 WD~~~~~~----------------------~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-------- 756 (847)
|-....+. ...........|..|+.... ..++.-..||.|..|-....
T Consensus 203 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 203 VGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY--CTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp EECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT--EEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred eeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc--EEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 96543111 11111112234555655422 23333357899999964421
Q ss_pred ---ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 757 ---SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 757 ---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
............|..++ ......+....+|.|+.|-.
T Consensus 281 ~~~~~~~p~~~~~~~v~~ia-~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 281 GKEFALTPIKTELKDIRHIA-GGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp TCSEEEEEEEECCCSEEEEE-ECSSEEEEEETTCCEEEEEC
T ss_pred CCceeeeeEEcCCCCeEEEE-cccCeEEEEeCCCcEEEEEC
Confidence 11111222223344444 23344556678888988864
No 380
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=53.49 E-value=1e+02 Score=31.21 Aligned_cols=142 Identities=11% Similarity=-0.021 Sum_probs=76.2
Q ss_pred CEEEEEeCCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------CCCceE---EEec
Q 003106 651 KLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD------NPGYSL---RTFM 720 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~------~~~~~~---~~~~ 720 (847)
..+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.++-+.+. ..+..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3456667778777655432111 1123333 344444444445567777778876655442 212211 1122
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEE
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~ 792 (847)
-...|.++....++.++ +.++..|.++...+.. +..+..++.....+.+... .....++..+..|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~l-ll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKL-LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEE-EEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEE-EEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 23456666443344444 4778899999998742 3333344433333443333 345578888888888777
Q ss_pred cCC
Q 003106 793 DSL 795 (847)
Q Consensus 793 d~~ 795 (847)
...
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 644
No 381
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=52.28 E-value=3e+02 Score=31.17 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCC-----------CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEE-ccCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRAST-----------SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNL-EEHSS 681 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~-----------~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~ 681 (847)
..+..||...+ .++....+.... ..+....+.-||+ -|+.|+. ++| ..++.+... .+|.+
T Consensus 292 ~~v~A~d~~~~-~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGD 364 (591)
T 2zux_A 292 TMLVAYNFRDG-KLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGD 364 (591)
T ss_dssp CEEEEEEEETT-EEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCS
T ss_pred eEEEEEECCCC-ceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCC
Confidence 35677887766 555555444311 2333444445554 3433321 222 123333322 28999
Q ss_pred CeEEEEEcCCC--CEEEEEeCCC----cEEEEECCCCCceEEEecc--CCCCeEEEEEecCCC
Q 003106 682 LITDVRFSPSM--PRLATSSFDK----TVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKD 736 (847)
Q Consensus 682 ~I~~v~fsp~~--~~Lasgs~Dg----~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~ 736 (847)
.+....|.|+. -.++.+..++ -..+.|.++ ++.+..... +.+.....+|.|+..
T Consensus 365 a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t-G~vlw~~~~~~d~Gr~~~~Didp~~p 426 (591)
T 2zux_A 365 ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT-GKILWGVYAGKDVGRGMAADIDPRYP 426 (591)
T ss_dssp CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT-CCEEEEECCSSCCCCEEEECCCTTSS
T ss_pred eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC-CcEEEEcCCCCCCCceeEEecCCCCC
Confidence 99999999984 4667766542 456789998 666665543 355666667777743
No 382
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=50.67 E-value=2e+02 Score=31.68 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--CceEEEec---------cCCCCeEEEEEecC---CCeEEEEEe
Q 003106 681 SLITDVRFSPSMP-RLATSSFDKTVRVWDADNP--GYSLRTFM---------GHSASVMSLDFHPN---KDDLICSCD 743 (847)
Q Consensus 681 ~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~--~~~~~~~~---------~h~~~V~sl~fsp~---g~~ll~s~s 743 (847)
...+.|+|.|++. .|+++...|.|++++.... ...+..+. ........|+|+|+ ..+++++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3468999999996 5767788999999975431 11222221 11456889999996 334544433
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.58 E-value=47 Score=38.22 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEE
Q 003106 641 VICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATS 698 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~D------------g~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasg 698 (847)
.--|+|+++|+++++-..+ ..+.+.+..+++..+.+.+.. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999999976664332 135556667788877776654 579999999999877665
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.24 E-value=72 Score=36.43 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCEEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEe
Q 003106 639 SKVICCHFSSDGKLLATGGH------------DKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~------------Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs 699 (847)
.....|+|.++|.+.++... ...|..++..++++...+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999988774322 114666677678876666543 35689999999999886653
No 385
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=42.39 E-value=4.3e+02 Score=30.10 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=95.7
Q ss_pred cCCCCEEEEEEcCC--CCEEEEEeCC----CcEEEEECCCCceeEEEcc--CCCCeEEEEEcCCC--CEEEEEeC---CC
Q 003106 636 ASTSKVICCHFSSD--GKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSM--PRLATSSF---DK 702 (847)
Q Consensus 636 ~h~~~V~~l~fspd--g~~Lasgs~D----g~V~vwd~~~~~~~~~l~~--h~~~I~~v~fsp~~--~~Lasgs~---Dg 702 (847)
+|.+.+....|.|+ |-.++.+.++ .-+.++|..+++++..... +.+....-.|.|+. -.+.+... ++
T Consensus 365 gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~pG~E~w~~~~~~~~~ 444 (620)
T 2zuy_A 365 GHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDG 444 (620)
T ss_dssp CCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSSSCEEEEECCTTSCC
T ss_pred CCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCCceEEEEeccccccc
Confidence 79999888889886 4456666554 2567899999999988754 34555566677763 34454431 11
Q ss_pred -cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCceEEEEeeCC-------ceE
Q 003106 703 -TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKVES-------FCC 769 (847)
Q Consensus 703 -~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~~~~~~~~~~~~~-------~~v 769 (847)
.-.||+... ..+.... -...=..|-|..+..+-++-++.+ +.|.-|+...+++...|.... ...
T Consensus 445 ~~~~l~~~~G--~~i~~~~-p~~~N~~i~WdGDl~re~ld~~~~~~~~~~~i~k~~~~~~~~~~l~t~~g~~snngTk~~ 521 (620)
T 2zuy_A 445 MSYGLFTSKG--EKISDKA-PSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQPAGVLSNNGTKGN 521 (620)
T ss_dssp CEEEEEETTC--CEEESSC-CSCCSEEECCSSSSSCEEEEEEECSSCEEEEEEEEETTTTEEEEEECCTTEECBSGGGCB
T ss_pred CCCceECCCC--CCccCCC-CCCcceEEEECCCccHhhhCCccccccCCceEEeccCCCCceeEEEEeecccccCCCcCC
Confidence 236888753 4443211 112234577887766666565444 678889988777666555331 112
Q ss_pred EEEEe--c---CCCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNA--M---NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~--~---~~~~l~~~~~~g~i~i~d~~ 795 (847)
.|+.. . .+..||...+...++||...
T Consensus 522 P~l~aDi~GDWREEvi~~t~D~~~LrIYtt~ 552 (620)
T 2zuy_A 522 PVLQANLFGDWREEVIWRTEDSSALRIYTTT 552 (620)
T ss_dssp CSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred cceeecccccCeeeEEEEcCCCCeEEEEeCC
Confidence 22221 1 34567777777889998744
No 386
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.49 E-value=17 Score=45.55 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
..|.+++..++.++|++-+.|+++|||++.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566777888999999999999999999999988753
No 387
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.92 E-value=3.9e+02 Score=28.51 Aligned_cols=148 Identities=7% Similarity=-0.021 Sum_probs=76.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc----------eeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LK----------SKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~----------~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..|..|+.. ....+.-..||.|+.|-... ++ ....+... ...|..|+.. ..+.+....||.|+.
T Consensus 121 ~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 121 IRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 357777654 34555556899999996542 11 11112111 2246666544 446666678999999
Q ss_pred EECCCCCc---------eE-EEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC---------ceE--EEEee
Q 003106 707 WDADNPGY---------SL-RTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---------SCT--RVFKV 764 (847)
Q Consensus 707 WD~~~~~~---------~~-~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~---------~~~--~~~~~ 764 (847)
|-....+. .. ..+.. ....|..|+.-.. ..+.-..||.|..|-.... ... ..+..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 97543221 01 11111 1234666654332 3345567899999965431 011 11111
Q ss_pred -CCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 765 -ESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 765 -~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
....|..++. .....+....+|.++.|-.
T Consensus 274 ~~~~~v~~i~~-G~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 274 LSNSFISQISG-GWRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp GTTSCEEEEEE-CSSEEEEEETTSCEEEEEC
T ss_pred cCCCCEEEEEe-cCCEEEEEcCCCeEEEeeC
Confidence 1222444432 3344556678888888863
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.18 E-value=4e+02 Score=28.42 Aligned_cols=107 Identities=8% Similarity=0.064 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce----------EEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----------LRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~----------~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
.|..|+.- ..+.+....||.|+.|-....+.. ...+.. ....|..|+.-.. ..+.-..||.|..
T Consensus 122 ~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE---HTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---EEEEEETTSCEEE
T ss_pred CEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCC---eEEEEeCCCCEEE
Confidence 56666654 446666778999999976542211 111111 1225666665433 3445567999999
Q ss_pred EECCCC-c--------eE--EEEee-CCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 751 WSINNG-S--------CT--RVFKV-ESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 751 WD~~~~-~--------~~--~~~~~-~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
|-.... . .. ..+.. ....+..++ ......+....+|.++.|-.
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va-~G~~ht~~l~~~G~v~~wG~ 251 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA-CGWRHTISVSYSGALYTYGW 251 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE-ECSSEEEEEETTCCEEEEEC
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE-ECCCcEEEEcCCCCEEEeeC
Confidence 965321 0 11 11111 112344443 23344556677888888863
No 389
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=37.14 E-value=2.4e+02 Score=33.20 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=58.5
Q ss_pred CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEcc------------CCCCeEEEEEcCC-CCEEEEEeCC-
Q 003106 637 STSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEE------------HSSLITDVRFSPS-MPRLATSSFD- 701 (847)
Q Consensus 637 h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~------------h~~~I~~v~fsp~-~~~Lasgs~D- 701 (847)
-.+.|.+|+++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|+++|. .+.|+.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999954 6677777667665554 33443333221 1245899999984 3455444321
Q ss_pred ----CcEEEEECCCCCceEEEecc-C------CC--CeEEEEEecCCCeEEEEEeCCC
Q 003106 702 ----KTVRVWDADNPGYSLRTFMG-H------SA--SVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 702 ----g~V~iWD~~~~~~~~~~~~~-h------~~--~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
....||--.+.+.....+.. . .+ .+..|+++|.....++.+..++
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~ 155 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQ 155 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSS
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCC
Confidence 12445544443443333321 0 11 1246888886543444455443
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.77 E-value=83 Score=36.13 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCCceEEEeccC-CCCeEEEEEecCCCeEEEEE
Q 003106 683 ITDVRFSPSMPRLATSSFD------------KTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~D------------g~V~iWD~~~~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s~ 742 (847)
.-.|+|++.|+++++-..+ ..+.+.+..+ ++..+.+.+. .+.++.++|+||++.+|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3568999999855554322 2345555555 5555555554 46799999999999888654
No 391
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=36.35 E-value=5.2e+02 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=28.3
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
|++|.+.+.+..+|+|+-.- .|...|. +++.+-.+.++.
T Consensus 357 iNsv~~d~~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred ecceeEcCCCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 88999998666677676555 6666674 788777776654
No 392
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=33.86 E-value=4.6e+02 Score=27.89 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=75.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CC-Cce-----------eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DT-LKS-----------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~--~~-~~~-----------~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
..|..|+.. ....+.-..||.|+.|-. .. +.+ ...+ .....|..|+.- ..+.+.-..||.|
T Consensus 111 ~~i~~va~G--~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v 185 (413)
T 1a12_A 111 EKVVQVSAG--DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDL 185 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CcEEEEecC--CCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCE
Confidence 356666654 234455567888888864 21 110 1111 123456666554 3456666789999
Q ss_pred EEEECCCCCceE---------------------EEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-
Q 003106 705 RVWDADNPGYSL---------------------RTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (847)
Q Consensus 705 ~iWD~~~~~~~~---------------------~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~- 756 (847)
+.|-....+.+- ..... ....|..|+.-.. ..+.-..||.|..|-....
T Consensus 186 ~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~---hs~alt~~G~v~~wG~n~~g 262 (413)
T 1a12_A 186 YTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY---FTFAISHEGHVYGFGLSNYH 262 (413)
T ss_dssp EEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT---EEEEEETTCCEEEEECCTTS
T ss_pred EEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC---EEEEEeCCCCEEEEeCCCCc
Confidence 999765422110 00100 1235666665543 2334457899999976531
Q ss_pred --------ceE--EEEeeCC---ceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 757 --------SCT--RVFKVES---FCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 757 --------~~~--~~~~~~~---~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
... ..+.... ..+..++. .....+....+|.++.|-.
T Consensus 263 qLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~-G~~hs~al~~~G~v~~wG~ 312 (413)
T 1a12_A 263 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSG-GQHHTVCMDSEGKAYSLGR 312 (413)
T ss_dssp TTSCSSCSCEEEEEECGGGCCTTCCEEEEEE-CSSEEEEEETTSCEEEEEC
T ss_pred CCCCCCCCcccccEEchhccCCCceEEEEec-ccceEEEEeCCCCEEEeeC
Confidence 111 1111111 22444442 3344456677888998864
No 393
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=32.67 E-value=5.9e+02 Score=28.80 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEc-------------------cCC------CCeEEEEEcCCCCEEEEEeC---C
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLE-------------------EHS------SLITDVRFSPSMPRLATSSF---D 701 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~-------------------~h~------~~I~~v~fsp~~~~Lasgs~---D 701 (847)
..+|+.|+.||.++.+|.. ++.+..|. .|. -.+..+.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 4688899999999999877 54433321 121 11334444322233444442 3
Q ss_pred CcEEEEECCCCC--ceEEEecc-------CCCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCceEEEEeeCC
Q 003106 702 KTVRVWDADNPG--YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 702 g~V~iWD~~~~~--~~~~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~------Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
..+...|+.++. ..+.++.. +.-.--.|.--.+++++++.++. ...|.|.|+.+|..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 457777877642 23333331 11111123444467777666653 3479999999999998886532
Q ss_pred -----ceEEEE---EecC---CCEEEEEcCCCcEEEEcCC
Q 003106 767 -----FCCWCV---NAMN---RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 767 -----~~v~~~---~~~~---~~~l~~~~~~g~i~i~d~~ 795 (847)
..+..+ ..+. ...++.+...|.|.-+|..
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~ 283 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLI 283 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcC
Confidence 112222 2121 2468889999988887754
No 394
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=32.51 E-value=4.8e+02 Score=27.74 Aligned_cols=106 Identities=8% Similarity=-0.025 Sum_probs=58.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc------------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDT-LK------------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~------------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.|..|+.. +...+.-..||.|+.|-... ++ ....+. ....|..|+.. ..+.+....||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEE
Confidence 46566553 44556667789999996432 11 011111 22356666554 345666678999999
Q ss_pred EEC--CCCCce---------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 707 WDA--DNPGYS---------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 707 WD~--~~~~~~---------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
|-. ...+.. .-........|..|+.-.. ..+.-..||.|..|-.
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~---hs~alt~~G~v~~wG~ 205 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD---HLVILTTAGKVFTVGC 205 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS---EEEEEETTSCEEEEEC
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC---eEEEEecCCeEEEeeC
Confidence 986 321111 1111112345666665433 3445567899999964
No 395
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.60 E-value=1.8e+02 Score=33.14 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCCceEEEeccC-CCCeEEEEEecCCCeEEEEEeCCC
Q 003106 682 LITDVRFSPSMPRLATSSF------------DKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~------------Dg~V~iWD~~~~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
....|.|+++|.+.++... ...|..+|..+ +.+...+.+. ...++.++|+||++.|+++.-.-|
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 3568999999976663322 12466666655 5544444432 457899999999998887775544
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.08 E-value=4.7e+02 Score=27.13 Aligned_cols=152 Identities=6% Similarity=0.041 Sum_probs=77.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CC------CceeE---EEccCCCCeEEE-EEcC--CCCEEEEEeCCCc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHT---DT------LKSKT---NLEEHSSLITDV-RFSP--SMPRLATSSFDKT 703 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~---~~------~~~~~---~l~~h~~~I~~v-~fsp--~~~~Lasgs~Dg~ 703 (847)
+.+..+........|+..+..|.++-+.+ .. |..+. .+. ....|.++ .+.. ++.+|+.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 34444444445566777777888766554 21 22111 122 22345554 3432 2568999999999
Q ss_pred EEEEECCC-------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----C---ceEEE--EeeCCc
Q 003106 704 VRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----G---SCTRV--FKVESF 767 (847)
Q Consensus 704 V~iWD~~~-------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~----~---~~~~~--~~~~~~ 767 (847)
++...+.. .+.....+... +.+..+........++ ..+.+|.+..+++.. + .-++. +.....
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~ 195 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF-LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDY 195 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE-EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCC
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE-EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCE
Confidence 99988742 12222223322 5555555554444454 666788888887642 1 11222 222222
Q ss_pred eEEEEEecCCC-EEEEEcCCCcEEEEc
Q 003106 768 CCWCVNAMNRP-CLWDKLDAGDIQISD 793 (847)
Q Consensus 768 ~v~~~~~~~~~-~l~~~~~~g~i~i~d 793 (847)
.+......... .+...+..|..+..+
T Consensus 196 Vv~~~~~~~~~~~ll~vt~~G~gKr~~ 222 (323)
T 1wp5_A 196 IVSGQLITSKDESIVVATQRGAVKKMK 222 (323)
T ss_dssp EEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEECCCceEEEE
Confidence 23322222333 466666676665544
No 397
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=30.55 E-value=5e+02 Score=27.34 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C----------ceeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-L----------KSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~----------~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..|..++++......+.-..||.|+.|-... + .....+..- ...|..|+.. ..+.+....||.|+.
T Consensus 105 ~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 105 VFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp SCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 3455667766666777778899999996432 1 011112211 2246666544 446666778999999
Q ss_pred EECCCCCc--------e--EEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC---------ceEE--EEee
Q 003106 707 WDADNPGY--------S--LRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---------SCTR--VFKV 764 (847)
Q Consensus 707 WD~~~~~~--------~--~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~---------~~~~--~~~~ 764 (847)
|-....+. . ...+.. ....|..|+.-.... ..+.-..||.|..|-.... .... .+..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC-EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc-EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 97643111 0 111111 223466666543222 3345567899999965421 0111 1111
Q ss_pred -CCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 765 -ESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 765 -~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
....+..+.. .....+....+|.++.|-.
T Consensus 262 ~~~~~v~~v~~-G~~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 262 LTGLGVVKVEC-GSQFSVALTKSGAVYTWGK 291 (389)
T ss_dssp GTTSCEEEEEE-ETTEEEEEETTSCEEEEEC
T ss_pred cCCCcEEEEeC-CCCEEEEEeCCCeEEEEeC
Confidence 1122444432 2334455678888988864
No 398
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.32 E-value=5.2e+02 Score=26.46 Aligned_cols=152 Identities=8% Similarity=0.032 Sum_probs=80.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CC------CceeE---EEccCCCCeEEEEEc---CCCCEEEEEeCCCc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHT---DT------LKSKT---NLEEHSSLITDVRFS---PSMPRLATSSFDKT 703 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~---~~------~~~~~---~l~~h~~~I~~v~fs---p~~~~Lasgs~Dg~ 703 (847)
+.+..+........|+..+..|.++-+.+ .. |..+. .+. ....|.++..- .+..+|+..+.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 33444444445556777777888666553 21 22211 122 23446555432 34568999999999
Q ss_pred EEEEECCC------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------CceEEEEeeCCce
Q 003106 704 VRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---------GSCTRVFKVESFC 768 (847)
Q Consensus 704 V~iWD~~~------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---------~~~~~~~~~~~~~ 768 (847)
++...+.. .+.....+..+ +.+..+........++ ..+.+|.+..+++.. |.....+......
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~V 198 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVM-LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKV 198 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEE-EECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEE
Confidence 99987742 11122223334 5555555554444454 566688887777632 1111122222233
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
+..........++..+..|.++..+
T Consensus 199 v~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 199 VSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp EEEECCCSSCEEEEEETTSEEEEEC
T ss_pred EEEEEecCCCEEEEEEcCCceEEEE
Confidence 3322223344577777777777665
No 399
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=27.31 E-value=14 Score=33.68 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.4
Q ss_pred cccCCcccCcc
Q 003106 317 TLKGWPLTGLE 327 (847)
Q Consensus 317 ~~~~~~~~~~~ 327 (847)
|=+.||.-|++
T Consensus 70 tE~EWR~LGIq 80 (150)
T 1qb3_A 70 TEDEWRGLGIT 80 (150)
T ss_dssp CHHHHHHTTCC
T ss_pred CHHHHHHHccc
Confidence 34555554553
No 400
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=26.63 E-value=7.6e+02 Score=28.13 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=43.2
Q ss_pred cCCCCeEEEEEecCCCeEE-EEEeCC----CcEEEEECCCCceEEEEeeCCceEEEEEe--c---CCCEEEEEc
Q 003106 721 GHSASVMSLDFHPNKDDLI-CSCDGD----GEIRYWSINNGSCTRVFKVESFCCWCVNA--M---NRPCLWDKL 784 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll-~s~s~D----g~V~iWD~~~~~~~~~~~~~~~~v~~~~~--~---~~~~l~~~~ 784 (847)
+|.+.+..-+|.|+..-+. +.|..+ .-+.++|.++|+.+.........-.|+.. + ....+|+..
T Consensus 365 gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~pG~E~w~~~ 438 (620)
T 2zuy_A 365 GHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGID 438 (620)
T ss_dssp CCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSSSCEEEEEC
T ss_pred CCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCCceEEEEec
Confidence 7888888888999854433 345443 25678999999998877655455555543 2 346788764
No 401
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=21.27 E-value=8.1e+02 Score=26.54 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCC---------ceEE---Eecc-CCCCeEEEEEecCCCeEEEEEeCC
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPG---------YSLR---TFMG-HSASVMSLDFHPNKDDLICSCDGD 745 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~--~~~---------~~~~---~~~~-h~~~V~sl~fsp~g~~ll~s~s~D 745 (847)
..|..|+.. ..+.+....||.|+.|-.. ..+ .... .+.. ....|..|+.-.+ ..+.-..|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~---hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKD---HILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSS---EEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCC---eEEEEeCC
Confidence 456666554 3455666789999999751 100 0111 1111 1123666665433 34456678
Q ss_pred CcEEEEECCCC-ce------------EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 746 GEIRYWSINNG-SC------------TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 746 g~V~iWD~~~~-~~------------~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
|.|..|-.... .+ ..........|..++ ......+....+|.|+.|-
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia-~G~~hs~alt~~G~v~~wG 282 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIA-SGENHCFALTKDNKLVSWG 282 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEE-ECSSEEEEEETTSCEEEEE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEe-cCCCeEEEEecCCCEEEeC
Confidence 99999965431 10 000000112344443 2344555666788888886
No 402
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=20.09 E-value=1.1e+03 Score=27.60 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEe
Q 003106 680 SSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 680 ~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s 743 (847)
...|.+|+|+|. ...+++++..+.|...+= .+.....+..+ ...|.+|+++|.....++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D--gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA--GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET--TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC--CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 467999999996 356777777777665542 24444444322 246999999986444443443
Done!