Query 003108
Match_columns 847
No_of_seqs 479 out of 1901
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02668 Peptidase_C19L A subfa 100.0 2.9E-36 6.2E-41 333.1 18.4 183 1-214 142-324 (324)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 1.7E-36 3.8E-41 337.9 12.4 144 1-149 252-395 (545)
3 cd02663 Peptidase_C19G A subfa 100.0 8.5E-35 1.8E-39 318.0 15.8 149 1-151 133-281 (300)
4 cd02664 Peptidase_C19H A subfa 100.0 4.2E-34 9E-39 316.3 14.6 147 1-150 123-308 (327)
5 KOG1866 Ubiquitin carboxyl-ter 100.0 4.2E-35 9.2E-40 330.4 -0.0 231 2-273 234-484 (944)
6 cd02671 Peptidase_C19O A subfa 100.0 5.6E-33 1.2E-37 307.3 16.0 144 1-152 147-313 (332)
7 cd02667 Peptidase_C19K A subfa 100.0 1.7E-32 3.7E-37 296.9 15.3 144 1-149 93-266 (279)
8 COG5077 Ubiquitin carboxyl-ter 100.0 1.8E-33 3.8E-38 317.3 5.7 212 1-262 324-539 (1089)
9 cd02659 peptidase_C19C A subfa 100.0 6.1E-32 1.3E-36 299.2 17.4 152 1-153 137-299 (334)
10 KOG4598 Putative ubiquitin-spe 100.0 2.1E-32 4.6E-37 305.0 5.1 179 2-220 195-445 (1203)
11 cd02660 Peptidase_C19D A subfa 100.0 1.8E-30 3.9E-35 286.8 15.6 145 1-149 147-315 (328)
12 cd02657 Peptidase_C19A A subfa 100.0 1.5E-30 3.3E-35 284.7 14.3 142 1-151 143-287 (305)
13 cd02661 Peptidase_C19E A subfa 100.0 5.5E-30 1.2E-34 278.8 15.7 144 1-149 148-291 (304)
14 cd02665 Peptidase_C19I A subfa 100.0 6.6E-30 1.4E-34 267.0 11.2 132 1-152 79-210 (228)
15 cd01795 USP48_C USP ubiquitin- 100.0 4.2E-30 9.2E-35 226.1 7.8 103 733-840 3-106 (107)
16 cd02674 Peptidase_C19R A subfa 100.0 4.4E-29 9.5E-34 261.5 15.2 146 1-149 64-217 (230)
17 cd02662 Peptidase_C19F A subfa 100.0 9E-29 2E-33 262.2 14.3 124 1-148 77-225 (240)
18 cd02658 Peptidase_C19B A subfa 100.0 6.9E-28 1.5E-32 264.5 15.7 132 1-148 150-297 (311)
19 cd02669 Peptidase_C19M A subfa 99.9 2.3E-28 5E-33 280.5 9.9 144 1-149 275-427 (440)
20 cd02670 Peptidase_C19N A subfa 99.9 6.7E-27 1.4E-31 246.4 12.3 121 2-147 64-220 (241)
21 cd02673 Peptidase_C19Q A subfa 99.9 1.2E-26 2.6E-31 246.3 12.1 133 1-149 94-229 (245)
22 COG5560 UBP12 Ubiquitin C-term 99.9 2.9E-27 6.3E-32 263.9 5.9 134 13-149 673-807 (823)
23 KOG1863 Ubiquitin carboxyl-ter 99.9 3.1E-26 6.7E-31 285.7 12.6 670 1-781 304-1029(1093)
24 cd02672 Peptidase_C19P A subfa 99.9 1E-25 2.2E-30 242.3 13.7 144 1-147 98-259 (268)
25 COG5533 UBP5 Ubiquitin C-termi 99.9 4.7E-25 1E-29 229.1 12.7 142 1-147 248-396 (415)
26 KOG1868 Ubiquitin C-terminal h 99.9 4.3E-25 9.2E-30 257.5 8.2 144 1-147 477-629 (653)
27 cd02257 Peptidase_C19 Peptidas 99.9 5.3E-24 1.2E-28 221.4 15.2 143 3-149 83-237 (255)
28 KOG1867 Ubiquitin-specific pro 99.9 5E-24 1.1E-28 244.4 8.4 145 1-149 310-469 (492)
29 KOG1864 Ubiquitin-specific pro 99.9 1.7E-23 3.7E-28 243.5 9.3 154 2-156 406-561 (587)
30 KOG1870 Ubiquitin C-terminal h 99.9 6.2E-24 1.3E-28 259.3 5.1 131 14-149 695-826 (842)
31 PF00443 UCH: Ubiquitin carbox 99.9 1.9E-21 4.2E-26 205.4 14.9 109 35-149 142-254 (269)
32 KOG1873 Ubiquitin-specific pro 99.8 4.9E-22 1.1E-26 226.2 -0.4 136 12-149 675-862 (877)
33 KOG0944 Ubiquitin-specific pro 99.8 1.2E-19 2.7E-24 205.2 12.0 87 4-96 456-548 (763)
34 cd02666 Peptidase_C19J A subfa 99.8 3.5E-19 7.6E-24 197.7 5.2 123 1-150 165-325 (343)
35 COG5207 UBP14 Isopeptidase T [ 99.6 2.6E-16 5.6E-21 172.9 9.6 90 2-97 445-539 (749)
36 KOG1871 Ubiquitin-specific pro 99.6 3.5E-16 7.5E-21 168.7 6.2 147 1-152 249-403 (420)
37 KOG0005 Ubiquitin-like protein 99.5 7.5E-15 1.6E-19 117.1 3.9 62 743-805 9-70 (70)
38 PF13423 UCH_1: Ubiquitin carb 99.5 6.3E-14 1.4E-18 153.2 12.5 125 14-143 162-295 (295)
39 cd01793 Fubi Fubi ubiquitin-li 99.5 5.6E-14 1.2E-18 122.0 7.1 62 745-807 9-70 (74)
40 cd01794 DC_UbP_C dendritic cel 99.5 1.2E-13 2.7E-18 118.5 7.0 62 744-806 8-69 (70)
41 cd01807 GDX_N ubiquitin-like d 99.4 1.7E-13 3.6E-18 119.0 7.1 62 745-807 11-72 (74)
42 KOG0003 Ubiquitin/60s ribosoma 99.4 1.5E-14 3.2E-19 128.8 -0.6 67 741-808 7-73 (128)
43 KOG1872 Ubiquitin-specific pro 99.4 4.7E-14 1E-18 156.1 3.1 146 2-153 255-451 (473)
44 cd01796 DDI1_N DNA damage indu 99.4 3.1E-13 6.7E-18 116.4 7.1 62 744-805 9-70 (71)
45 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 4.9E-13 1.1E-17 115.6 7.0 60 745-805 12-71 (73)
46 cd01798 parkin_N amino-termina 99.4 8.2E-13 1.8E-17 113.4 7.1 62 744-806 8-69 (70)
47 cd01810 ISG15_repeat2 ISG15 ub 99.4 1.4E-12 3E-17 113.2 7.1 62 745-807 9-70 (74)
48 cd01799 Hoil1_N Ubiquitin-like 99.3 1.3E-12 2.9E-17 113.5 6.5 60 745-805 13-73 (75)
49 cd01802 AN1_N ubiquitin-like d 99.3 2.3E-12 5E-17 118.9 7.3 63 745-808 38-100 (103)
50 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.5E-12 3.3E-17 112.0 5.3 53 753-806 19-74 (75)
51 KOG0004 Ubiquitin/40S ribosoma 99.3 8.9E-13 1.9E-17 126.4 3.6 63 744-807 10-72 (156)
52 cd01797 NIRF_N amino-terminal 99.3 3.4E-12 7.4E-17 111.9 6.9 61 747-808 14-75 (78)
53 PTZ00044 ubiquitin; Provisiona 99.3 4.1E-12 8.8E-17 110.7 7.1 62 745-807 11-72 (76)
54 PF00240 ubiquitin: Ubiquitin 99.3 5.6E-12 1.2E-16 107.6 7.2 62 745-807 6-67 (69)
55 cd01800 SF3a120_C Ubiquitin-li 99.3 5.1E-12 1.1E-16 110.3 7.1 64 744-808 7-70 (76)
56 cd01808 hPLIC_N Ubiquitin-like 99.3 1.2E-11 2.6E-16 106.5 7.1 59 747-806 12-70 (71)
57 cd01806 Nedd8 Nebb8-like ubiq 99.2 1.5E-11 3.3E-16 106.7 7.6 63 745-808 11-73 (76)
58 cd01805 RAD23_N Ubiquitin-like 99.2 2.3E-11 5.1E-16 106.1 7.7 63 745-808 11-75 (77)
59 smart00695 DUSP Domain in ubiq 99.2 1.1E-11 2.3E-16 110.8 5.2 71 302-372 4-85 (86)
60 cd01804 midnolin_N Ubiquitin-l 99.2 2.3E-11 5E-16 106.7 7.0 62 745-808 12-73 (78)
61 cd01809 Scythe_N Ubiquitin-lik 99.2 2.8E-11 6.1E-16 103.9 7.4 61 745-806 11-71 (72)
62 cd01803 Ubiquitin Ubiquitin. U 99.2 2.5E-11 5.5E-16 105.4 7.1 63 745-808 11-73 (76)
63 cd01812 BAG1_N Ubiquitin-like 99.2 2.8E-11 6.1E-16 103.8 6.6 62 744-806 9-70 (71)
64 cd01792 ISG15_repeat1 ISG15 ub 99.2 2.4E-11 5.2E-16 107.1 6.2 63 745-808 13-77 (80)
65 cd01790 Herp_N Homocysteine-re 99.1 1.1E-10 2.4E-15 101.9 6.5 61 745-806 14-78 (79)
66 cd01813 UBP_N UBP ubiquitin pr 99.1 1.9E-10 4.2E-15 99.8 6.4 60 745-805 10-72 (74)
67 cd01763 Sumo Small ubiquitin-r 99.0 6.5E-10 1.4E-14 99.7 7.9 63 744-807 21-83 (87)
68 KOG2026 Spindle pole body prot 99.0 2E-10 4.4E-15 124.1 3.9 130 3-147 277-424 (442)
69 cd01814 NTGP5 Ubiquitin-like N 99.0 3.9E-10 8.4E-15 103.6 4.5 60 748-808 19-91 (113)
70 smart00213 UBQ Ubiquitin homol 98.9 1.1E-09 2.4E-14 91.3 5.7 55 745-800 10-64 (64)
71 cd01769 UBL Ubiquitin-like dom 98.9 6.4E-09 1.4E-13 88.0 7.4 62 744-806 7-68 (69)
72 PF06337 DUSP: DUSP domain; I 98.8 6.9E-09 1.5E-13 95.0 7.7 92 538-635 1-97 (99)
73 cd01789 Alp11_N Ubiquitin-like 98.8 6.6E-09 1.4E-13 92.5 6.7 63 746-808 14-82 (84)
74 smart00695 DUSP Domain in ubiq 98.8 1.9E-08 4.2E-13 89.8 8.4 79 537-635 3-81 (86)
75 KOG0010 Ubiquitin-like protein 98.7 2.5E-08 5.5E-13 111.9 8.0 70 744-814 24-93 (493)
76 cd01788 ElonginB Ubiquitin-lik 98.7 4.6E-08 9.9E-13 89.5 7.0 77 741-818 8-94 (119)
77 PF06337 DUSP: DUSP domain; I 98.7 2.8E-08 6E-13 91.0 5.4 67 412-482 4-93 (99)
78 TIGR00601 rad23 UV excision re 98.7 3.8E-08 8.3E-13 110.4 7.5 63 745-808 11-76 (378)
79 PF14560 Ubiquitin_2: Ubiquiti 98.4 3.6E-07 7.8E-12 81.9 5.9 64 745-808 14-84 (87)
80 PF11976 Rad60-SLD: Ubiquitin- 98.4 4.9E-07 1.1E-11 77.8 6.5 61 745-806 11-72 (72)
81 KOG0001 Ubiquitin and ubiquiti 98.4 9.8E-07 2.1E-11 74.5 7.6 64 744-808 9-72 (75)
82 PLN02560 enoyl-CoA reductase 98.1 6.5E-06 1.4E-10 90.5 7.3 61 747-808 16-84 (308)
83 cd01801 Tsc13_N Ubiquitin-like 98.0 7E-06 1.5E-10 71.9 5.4 54 752-806 20-76 (77)
84 PF11543 UN_NPL4: Nuclear pore 97.9 1.1E-05 2.4E-10 71.2 4.3 62 744-805 13-78 (80)
85 PF13881 Rad60-SLD_2: Ubiquiti 97.9 2.1E-05 4.6E-10 73.6 5.8 62 746-808 15-89 (111)
86 KOG0011 Nucleotide excision re 97.8 2.1E-05 4.6E-10 84.7 5.8 63 745-808 11-75 (340)
87 cd00196 UBQ Ubiquitin-like pro 97.8 8.2E-05 1.8E-09 59.6 7.3 62 744-806 7-68 (69)
88 KOG4248 Ubiquitin-like protein 97.8 2.6E-05 5.6E-10 94.2 5.9 61 745-807 13-73 (1143)
89 KOG1275 PAB-dependent poly(A) 97.6 7.7E-05 1.7E-09 88.8 6.9 114 36-149 702-843 (1118)
90 KOG4495 RNA polymerase II tran 97.6 9E-05 2E-09 65.8 5.3 80 739-818 6-93 (110)
91 cd01811 OASL_repeat1 2'-5' oli 97.4 0.00053 1.1E-08 58.4 6.5 63 745-808 11-77 (80)
92 KOG0006 E3 ubiquitin-protein l 97.0 0.00059 1.3E-08 72.7 3.9 60 745-805 14-73 (446)
93 PF15499 Peptidase_C98: Ubiqui 95.5 0.011 2.5E-07 62.2 3.8 70 49-142 183-252 (275)
94 PF11470 TUG-UBL1: GLUT4 regul 95.4 0.041 8.9E-07 46.7 6.1 59 745-804 7-65 (65)
95 PF08817 YukD: WXG100 protein 95.1 0.03 6.4E-07 49.3 4.4 60 745-805 13-79 (79)
96 KOG1872 Ubiquitin-specific pro 94.5 0.043 9.3E-07 62.4 4.9 63 745-808 13-76 (473)
97 KOG3206 Alpha-tubulin folding 93.6 0.11 2.5E-06 53.0 5.4 59 750-808 18-82 (234)
98 PF00789 UBX: UBX domain; Int 92.9 0.29 6.2E-06 43.1 6.4 61 745-805 17-81 (82)
99 KOG0013 Uncharacterized conser 92.9 0.13 2.8E-06 52.7 4.6 71 737-808 147-221 (231)
100 PF10302 DUF2407: DUF2407 ubiq 92.9 0.14 3.1E-06 46.9 4.5 48 746-794 13-64 (97)
101 KOG1769 Ubiquitin-like protein 92.8 0.38 8.2E-06 43.9 6.8 61 745-806 31-91 (99)
102 KOG1639 Steroid reductase requ 92.0 0.25 5.4E-06 51.9 5.4 59 749-808 17-80 (297)
103 smart00166 UBX Domain present 91.5 0.61 1.3E-05 41.0 6.6 61 745-805 15-79 (80)
104 PF14836 Ubiquitin_3: Ubiquiti 90.7 0.72 1.6E-05 41.5 6.2 61 745-806 14-79 (88)
105 KOG3493 Ubiquitin-like protein 90.6 0.12 2.6E-06 43.1 1.1 61 743-804 10-70 (73)
106 cd01770 p47_UBX p47-like ubiqu 88.2 1 2.2E-05 39.8 5.3 57 745-801 15-74 (79)
107 cd01774 Faf1_like2_UBX Faf1 ik 87.5 2.4 5.1E-05 38.0 7.3 58 748-806 18-84 (85)
108 cd01772 SAKS1_UBX SAKS1-like U 86.6 2.4 5.2E-05 37.3 6.8 59 746-805 16-78 (79)
109 PF15044 CLU_N: Mitochondrial 86.0 1.1 2.4E-05 39.2 4.3 54 751-805 1-56 (76)
110 cd01767 UBX UBX (ubiquitin reg 83.8 3.7 8E-05 35.7 6.6 59 745-805 13-75 (77)
111 cd01773 Faf1_like1_UBX Faf1 ik 82.0 6.7 0.00015 34.9 7.5 62 745-807 16-81 (82)
112 KOG1870 Ubiquitin C-terminal h 80.2 1.4 3E-05 55.5 3.5 118 15-147 482-600 (842)
113 cd01771 Faf1_UBX Faf1 UBX doma 75.2 11 0.00024 33.4 6.7 59 746-805 16-78 (80)
114 KOG0012 DNA damage inducible p 72.0 3.7 8E-05 45.8 3.6 64 745-808 13-77 (380)
115 cd06406 PB1_P67 A PB1 domain i 66.6 10 0.00022 33.6 4.6 37 745-781 11-47 (80)
116 COG5227 SMT3 Ubiquitin-like pr 60.6 21 0.00045 32.2 5.3 60 745-805 35-94 (103)
117 PF05408 Peptidase_C28: Foot-a 56.4 11 0.00024 38.4 3.3 29 119-149 137-165 (193)
118 PF13019 Telomere_Sde2: Telome 56.0 35 0.00077 34.3 6.8 56 745-800 15-73 (162)
119 COG5560 UBP12 Ubiquitin C-term 53.2 19 0.00042 43.1 5.0 65 303-367 45-118 (823)
120 cd00754 MoaD Ubiquitin domain 50.7 40 0.00087 29.0 5.7 55 745-805 16-74 (80)
121 PF14453 ThiS-like: ThiS-like 49.2 49 0.0011 27.5 5.4 49 745-805 6-54 (57)
122 COG3478 Predicted nucleic-acid 45.1 18 0.00038 30.6 2.2 36 34-69 3-40 (68)
123 TIGR02958 sec_mycoba_snm4 secr 45.1 55 0.0012 38.5 7.3 78 745-823 12-96 (452)
124 PF08337 Plexin_cytopl: Plexin 44.3 32 0.0007 41.1 5.2 62 747-808 204-290 (539)
125 COG5417 Uncharacterized small 43.6 58 0.0013 28.5 5.2 59 745-804 17-80 (81)
126 PRK06437 hypothetical protein; 42.2 82 0.0018 26.8 6.1 51 745-805 11-61 (67)
127 cd00565 ThiS ThiaminS ubiquiti 41.2 86 0.0019 26.2 6.0 53 747-805 7-59 (65)
128 PF02192 PI3K_p85B: PI3-kinase 40.6 31 0.00066 30.5 3.2 26 747-772 2-27 (78)
129 KOG1887 Ubiquitin carboxyl-ter 40.0 12 0.00026 45.9 0.8 87 51-147 676-766 (806)
130 cd01778 RASSF1_RA Ubiquitin-li 36.4 69 0.0015 29.5 4.9 45 733-777 4-49 (96)
131 PF10209 DUF2340: Uncharacteri 35.3 88 0.0019 30.0 5.6 69 737-805 8-106 (122)
132 TIGR01683 thiS thiamine biosyn 35.3 1.2E+02 0.0025 25.3 5.9 52 748-805 7-58 (64)
133 PF11620 GABP-alpha: GA-bindin 34.5 80 0.0017 28.4 4.8 59 747-806 5-63 (88)
134 PF12436 USP7_ICP0_bdg: ICP0-b 34.2 43 0.00093 36.0 3.9 60 748-808 88-153 (249)
135 smart00143 PI3K_p85B PI3-kinas 33.6 42 0.00091 29.7 3.0 26 747-772 2-27 (78)
136 KOG2086 Protein tyrosine phosp 33.5 59 0.0013 37.0 4.8 57 745-801 316-375 (380)
137 KOG4250 TANK binding protein k 32.3 47 0.001 40.6 4.1 38 745-782 325-362 (732)
138 COG5100 NPL4 Nuclear pore prot 32.1 92 0.002 35.5 5.9 63 745-808 10-80 (571)
139 smart00666 PB1 PB1 domain. Pho 32.0 95 0.0021 26.8 5.0 36 745-780 11-46 (81)
140 cd01768 RA RA (Ras-associating 31.7 1.8E+02 0.0038 25.5 6.8 48 745-792 13-68 (87)
141 cd01776 Rin1_RA Ubiquitin doma 30.8 1E+02 0.0022 27.6 4.8 42 746-787 15-61 (87)
142 cd06411 PB1_p51 The PB1 domain 30.4 84 0.0018 27.8 4.3 37 745-781 7-43 (78)
143 TIGR01682 moaD molybdopterin c 29.1 1.8E+02 0.0039 25.2 6.3 55 745-805 16-74 (80)
144 PF14451 Ub-Mut7C: Mut7-C ubiq 29.1 1.4E+02 0.0031 26.5 5.6 51 745-805 23-74 (81)
145 PF00788 RA: Ras association ( 28.6 1.4E+02 0.0029 26.2 5.6 49 746-794 18-74 (93)
146 PF12754 Blt1: Cell-cycle cont 27.3 21 0.00045 39.4 0.0 44 753-797 102-160 (309)
147 PRK08364 sulfur carrier protei 24.6 2.8E+02 0.0061 23.6 6.5 50 746-805 15-64 (70)
148 PF02017 CIDE-N: CIDE-N domain 24.3 1.5E+02 0.0032 26.4 4.7 48 755-806 21-70 (78)
149 TIGR01687 moaD_arch MoaD famil 24.2 2.8E+02 0.006 24.4 6.7 56 745-805 16-82 (88)
150 PTZ00380 microtubule-associate 24.0 1.4E+02 0.0031 28.7 4.9 44 749-793 45-88 (121)
151 smart00455 RBD Raf-like Ras-bi 23.0 1.3E+02 0.0029 25.8 4.2 40 745-784 10-51 (70)
152 KOG3391 Transcriptional co-rep 22.8 86 0.0019 30.5 3.2 28 781-808 110-137 (151)
153 PF11834 DUF3354: Domain of un 21.8 1.1E+02 0.0024 26.4 3.5 43 755-804 26-68 (69)
154 PF14732 UAE_UbL: Ubiquitin/SU 21.3 77 0.0017 28.5 2.5 56 753-808 7-70 (87)
155 PF11164 DUF2948: Protein of u 20.7 4.4E+02 0.0096 25.9 7.7 72 53-125 30-104 (138)
156 COG5629 Predicted metal-bindin 20.6 55 0.0012 35.3 1.6 88 328-446 86-173 (321)
157 PF06487 SAP18: Sin3 associate 20.4 84 0.0018 30.1 2.7 27 779-805 93-119 (120)
158 cd01615 CIDE_N CIDE_N domain, 20.2 1.7E+02 0.0037 26.0 4.3 48 755-806 21-70 (78)
159 cd01760 RBD Ubiquitin-like dom 20.1 2.3E+02 0.0049 24.6 5.0 36 746-781 11-46 (72)
No 1
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-36 Score=333.08 Aligned_cols=183 Identities=48% Similarity=0.805 Sum_probs=160.1
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|+.|+|+|++..+|++||+.|+.+|.|+|+|+|.|++|+.+++|.|+..|.+||+||+|||+||.|+..++...|++
T Consensus 142 ~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~ 221 (324)
T cd02668 142 PSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLN 221 (324)
T ss_pred ccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred ceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGS 160 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~~ 160 (847)
+.|.||..|||++|+.........|+|+|||+|.|.++++|||+||+|+..+++||+|||+.|++++.+.+.+..++.++
T Consensus 222 ~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~ 301 (324)
T cd02668 222 ASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPA 301 (324)
T ss_pred cEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccc
Confidence 99999999999999876554578999999999999878999999999986678999999999999998877665443321
Q ss_pred ccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEE
Q 003108 161 KVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYN 214 (847)
Q Consensus 161 k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~ 214 (847)
+. .-+....+.+.+.+||||||+
T Consensus 302 ~~-------------------------------~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 302 KP-------------------------------RKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cc-------------------------------cccccCCCccccCceEEEEeC
Confidence 10 011123346789999999995
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=337.95 Aligned_cols=144 Identities=33% Similarity=0.699 Sum_probs=137.6
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+.++|+|.|.+..+|++||++|+.+|.|+|+|+|+|++|+++++|.|+.+|.++|+||+||||||.+ ++..||+
T Consensus 252 yE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~ 327 (545)
T KOG1865|consen 252 YEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKIS 327 (545)
T ss_pred cccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----Ccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999996 6678999
Q ss_pred ceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
..|.||+.|||.||++.+.+.+..|.|+|||+|.|.+.++|||+||||+ .+|.||+|||+.|+.++.+
T Consensus 328 K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~~ 395 (545)
T KOG1865|consen 328 KPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSIE 395 (545)
T ss_pred cccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEc-CCCceEEccCceeeecccc
Confidence 9999999999999999888779999999999999999999999999998 6789999999999999743
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.5e-35 Score=318.01 Aligned_cols=149 Identities=30% Similarity=0.608 Sum_probs=137.5
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|++|+|+|++..+|++||+.|+++|.|+|+|+|+|++|+.+++|+|+..|.++|+||+|||+||.|+...+...|++
T Consensus 133 ~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 212 (300)
T cd02663 133 DETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLF 212 (300)
T ss_pred cceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999997666789999
Q ss_pred ceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~ 151 (847)
+.|.||.+|||.++..........|+|+|||+|.|+++++|||++|+|+ ++.||+|||+.|++++...+
T Consensus 213 ~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v 281 (300)
T cd02663 213 YRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAV 281 (300)
T ss_pred ceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHH
Confidence 9999999999998865444446899999999999987799999999997 88999999999999986544
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-34 Score=316.33 Aligned_cols=147 Identities=30% Similarity=0.586 Sum_probs=133.3
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|+.|+|+|+ +|++||+.|+.+|.|+|+|+|+|++|+++++|.|+..|.++|+||+|||+||.||..++...|++
T Consensus 123 ~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 199 (327)
T cd02664 123 TERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIM 199 (327)
T ss_pred cccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecC
Confidence 478999999998 89999999999999999999999999999999999999999999999999999999888889999
Q ss_pred ceeeeceeeccccccCCC-------------------CCCCceeEEeEEEeeeccccCCceEEEEEEecC----------
Q 003108 81 SPFCFPGELNMQRRLSEP-------------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN---------- 131 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~-------------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~---------- 131 (847)
++|.||..|||.++.... ......|+|+|||+|.|.++++|||+||+|+..
T Consensus 200 ~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~ 279 (327)
T cd02664 200 DNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECP 279 (327)
T ss_pred ceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCcccccccccc
Confidence 999999999999886311 112579999999999998789999999999753
Q ss_pred ----------CCcEEEEcCCceeecCCCC
Q 003108 132 ----------TGQWWEFDDEHVSNLGHHP 150 (847)
Q Consensus 132 ----------~~~W~~fnD~~Vt~v~~~~ 150 (847)
++.||+|||+.|++++...
T Consensus 280 ~~~~~~~~~~~~~W~~fnD~~V~~~~~~~ 308 (327)
T cd02664 280 EPKDAEENDESKNWYLFNDSRVTFSSFES 308 (327)
T ss_pred ccccccccCCCCCEEEEeCCceEECCHHH
Confidence 3799999999999998553
No 5
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-35 Score=330.36 Aligned_cols=231 Identities=29% Similarity=0.464 Sum_probs=181.2
Q ss_pred CcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCc
Q 003108 2 EDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITS 81 (847)
Q Consensus 2 E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~ 81 (847)
|.|..|+|+|. +.+|+++|++|++.|.|+|.|.|+|++|++|+...|++.|++||+||.||||||.||..+....|-|+
T Consensus 234 E~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~ 312 (944)
T KOG1866|consen 234 ESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFND 312 (944)
T ss_pred ccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccch
Confidence 78999999999 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeceeeccccccCCC-----------------CCCCceeEEeEEEeeeccccCCceEEEEEEec---CCCcEEEEcCC
Q 003108 82 PFCFPGELNMQRRLSEP-----------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE---NTGQWWEFDDE 141 (847)
Q Consensus 82 ~V~fP~~Ldl~~~~~~~-----------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~---~~~~W~~fnD~ 141 (847)
.|.||.+|||.||+... +....+|+|+|||+|+|.+ ++|||++||++. ..++||+|||.
T Consensus 313 ~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqA-saGHYySfIk~rr~~~~~kWykfnD~ 391 (944)
T KOG1866|consen 313 YFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQA-SAGHYYSFIKQRRGEDGNKWYKFNDG 391 (944)
T ss_pred hcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccc-cCcchhhhhhhhccCCCCceEeccCc
Confidence 99999999999997532 1237899999999999995 999999999974 24699999999
Q ss_pred ceeecCCCCCCCCCCCCCCccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEecccccc
Q 003108 142 HVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKED 221 (847)
Q Consensus 142 ~Vt~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~ 221 (847)
.|++++..++...=.| + +.+++ +.. +.. .-.-.|||||||+|.++...
T Consensus 392 ~Vte~~~n~me~~cfG---------------G-ey~q~----~~~----------~~~--rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 392 DVTECKMNEMENECFG---------------G-EYMQM----MKR----------MSY--RRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred cccccchhhHHHHhhc---------------c-hhhhc----ccc----------cch--HHHhhhhHHHHHHHhcCCCc
Confidence 9999987643222111 1 11111 100 001 12678999999999886543
Q ss_pred cccccccccccchhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 003108 222 SKRKDVVHDVNNMEIESEMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKL 273 (847)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~l~~~I~~~N~~f~~~~~~~~~ 273 (847)
...-.. ++-......+.-++.|+.+.+.|..+|-.|+..+..|.-
T Consensus 440 ~~~p~~-------~~~~l~~~s~ei~~~~~~i~r~vrd~n~kFm~nRd~~S~ 484 (944)
T KOG1866|consen 440 DDEPIR-------EILSLTIDSPEIIPMSSPIERSVRDQNVKFMHNRDQYSF 484 (944)
T ss_pred cccccc-------cccccccCCcccCCCchHHHHHHHHhhhhhhcccchhhH
Confidence 221100 011111122344567889999999999999988887743
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-33 Score=307.29 Aligned_cols=144 Identities=31% Similarity=0.599 Sum_probs=129.6
Q ss_pred CCcceeEEeeCCCC-------------------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEE
Q 003108 1 MEDFYELELNVKGL-------------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLN 61 (847)
Q Consensus 1 ~E~F~~LsL~v~~~-------------------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLi 61 (847)
+|+|++|+|+|++. .+|++||+.|+++|.|+|+|+|+|++|+.+++|+|++.|.++|+||+
T Consensus 147 ~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~ 226 (332)
T cd02671 147 REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVIT 226 (332)
T ss_pred ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEE
Confidence 58999999999864 58999999999999999999999999999999999999999999999
Q ss_pred EEeeeeEEecCC----CceeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEE
Q 003108 62 FQLKRCVFLPKT----TMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWE 137 (847)
Q Consensus 62 i~LkRF~~d~~~----~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~ 137 (847)
|||+||.|+... +...|+++.|.||..|||.++..... ...|+|+|||+|.|.++++|||+||+| ||+
T Consensus 227 i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~--~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~ 298 (332)
T cd02671 227 IHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPK--NDVYRLFAVVMHSGATISSGHYTAYVR------WLL 298 (332)
T ss_pred EEeeeeccccccccccCCceecCccccCccccccccccCCCC--CCeEEEEEEEEEcCCCCCCCeEEEEEE------EEE
Confidence 999999987421 45689999999999999998765433 689999999999998789999999999 999
Q ss_pred EcCCceeecCCCCCC
Q 003108 138 FDDEHVSNLGHHPFG 152 (847)
Q Consensus 138 fnD~~Vt~v~~~~~~ 152 (847)
|||+.|+.++.+.+.
T Consensus 299 fdD~~V~~~~~~~~~ 313 (332)
T cd02671 299 FDDSEVKVTEEKDFL 313 (332)
T ss_pred EcCcceEEccHHHHH
Confidence 999999999865443
No 7
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=1.7e-32 Score=296.91 Aligned_cols=144 Identities=28% Similarity=0.530 Sum_probs=129.0
Q ss_pred CCcceeEEeeCCC----CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCce
Q 003108 1 MEDFYELELNVKG----LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (847)
Q Consensus 1 ~E~F~~LsL~v~~----~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~ 76 (847)
.|+|++|+|+++. ..+|++||+.|+++|.|+|+|+|.|++|++ |+|+..|.++|++|+|||+||.|+... ..
T Consensus 93 ~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~ 168 (279)
T cd02667 93 YEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSA-NL 168 (279)
T ss_pred cccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCccc-Cc
Confidence 4899999998753 579999999999999999999999999987 999999999999999999999998653 56
Q ss_pred eccCceeeeceeeccccccCCC-----CCCCceeEEeEEEeeeccccCCceEEEEEEecC--------------------
Q 003108 77 KKITSPFCFPGELNMQRRLSEP-----SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-------------------- 131 (847)
Q Consensus 77 ~Ki~~~V~fP~~Ldl~~~~~~~-----~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~-------------------- 131 (847)
.|+++.|.||.+|||++|+... ......|+|+|||+|.|++ ++|||+||+|...
T Consensus 169 ~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 247 (279)
T cd02667 169 RKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGP 247 (279)
T ss_pred eecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccccccccCCC
Confidence 8999999999999999998762 2236899999999999997 9999999999743
Q ss_pred -CCcEEEEcCCceeecCCC
Q 003108 132 -TGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 132 -~~~W~~fnD~~Vt~v~~~ 149 (847)
++.||+|||+.|++++.+
T Consensus 248 ~~~~W~~~dD~~V~~v~~~ 266 (279)
T cd02667 248 GSGQWYYISDSDVREVSLE 266 (279)
T ss_pred CCCcEEEEECCccEECCHH
Confidence 689999999999999743
No 8
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-33 Score=317.27 Aligned_cols=212 Identities=33% Similarity=0.531 Sum_probs=173.6
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+||+|.||+++..+|+|++..|.+.|.|+|+|+|+|++-| .++|.|-.-|.+|||||.||||||.||..+....|||
T Consensus 324 vedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKIN 402 (1089)
T COG5077 324 VEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKIN 402 (1089)
T ss_pred HHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeec
Confidence 589999999999999999999999999999999999999977 7999999999999999999999999999999999999
Q ss_pred ceeeeceeeccccccCCCCCC----CceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQL----DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSS 156 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~----~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~ 156 (847)
++.+||+++||.||++...+. .+.|.|+||++|+|. .+.|||+|++|...+|.||+|||++|+.++...+.+...
T Consensus 403 DryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNf 481 (1089)
T COG5077 403 DRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENF 481 (1089)
T ss_pred ccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhc
Confidence 999999999999999875432 589999999999999 699999999999899999999999999998765554433
Q ss_pred CCCCccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEecccccccccccccccccchhh
Q 003108 157 SSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEI 236 (847)
Q Consensus 157 ~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~ 236 (847)
|+. ..- ........+.-.-.+||||+|-|++... +.+.+
T Consensus 482 Ggd------------~~~------------------~~k~r~~~~~kRfmsAYmLvYlRks~~d-----dLlnP------ 520 (1089)
T COG5077 482 GGD------------HPY------------------KDKIRDHSGIKRFMSAYMLVYLRKSMLD-----DLLNP------ 520 (1089)
T ss_pred CCC------------CCC------------------cccccCCchhhhhhhhheeeeehHhHHH-----hhhCc------
Confidence 321 110 0011112223355789999999998543 11111
Q ss_pred hhhhhccCCCCCCChHHHHHHHHHHH
Q 003108 237 ESEMIFFNDDIFLPSHLGKDIKELNR 262 (847)
Q Consensus 237 ~~~~~~~~~~~~lP~~l~~~I~~~N~ 262 (847)
-....+|+|+.+.+.+.-.
T Consensus 521 -------V~a~diP~hv~e~l~eei~ 539 (1089)
T COG5077 521 -------VAAVDIPPHVEEVLSEEID 539 (1089)
T ss_pred -------hhhhhCCHHHHHhhCHHHH
Confidence 1345699999888776533
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=6.1e-32 Score=299.20 Aligned_cols=152 Identities=42% Similarity=0.761 Sum_probs=139.8
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|+.|+|++++..+|++||+.|+.+|.++|+|+|.|++|+.++.+.|+..|.++|++|+|||+||.|+..++...|++
T Consensus 137 ~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~ 216 (334)
T cd02659 137 EEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKIN 216 (334)
T ss_pred cccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceeeeceeeccccccCCCC-----------CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 81 SPFCFPGELNMQRRLSEPS-----------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-----------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||++|+|+..++.||.|||+.|++++.+
T Consensus 217 ~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~ 295 (334)
T cd02659 217 DRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPN 295 (334)
T ss_pred ceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHH
Confidence 9999999999999986532 22678999999999998 69999999999866799999999999999977
Q ss_pred CCCC
Q 003108 150 PFGE 153 (847)
Q Consensus 150 ~~~~ 153 (847)
.+.+
T Consensus 296 ~v~~ 299 (334)
T cd02659 296 DAEE 299 (334)
T ss_pred HHHH
Confidence 6643
No 10
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-32 Score=305.00 Aligned_cols=179 Identities=30% Similarity=0.564 Sum_probs=154.4
Q ss_pred CcceeEEeeCCC------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCc
Q 003108 2 EDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (847)
Q Consensus 2 E~F~~LsL~v~~------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~ 75 (847)
+.|++|+|+|+. -.|++++|..|.+||.|+|.|+|-|++|+++++|.|-..|..+|-+|.||||||.||.++++
T Consensus 195 d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmh 274 (1203)
T KOG4598|consen 195 DYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMH 274 (1203)
T ss_pred ceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchhee
Confidence 579999999976 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCceeeeceeeccccccCCCC--------------------------------------------------------
Q 003108 76 KKKITSPFCFPGELNMQRRLSEPS-------------------------------------------------------- 99 (847)
Q Consensus 76 ~~Ki~~~V~fP~~Ldl~~~~~~~~-------------------------------------------------------- 99 (847)
+.|+|++++||..|||..|+....
T Consensus 275 riklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~ 354 (1203)
T KOG4598|consen 275 RIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPID 354 (1203)
T ss_pred eeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCc
Confidence 999999999999999999874210
Q ss_pred ----------CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCCCccccCCCcc
Q 003108 100 ----------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVV 169 (847)
Q Consensus 100 ----------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~~k~~~~~~~~ 169 (847)
..++.|+|+||.+|+|++ .+|||++|||+..+++||.|||.+|+.++...+...++|.+
T Consensus 355 ~~~~~~~~~~sg~~~yelf~imihsg~a-~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~---------- 423 (1203)
T KOG4598|consen 355 HAAVDDIVKTSGDNVYELFSVMVHSGNA-AGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHP---------- 423 (1203)
T ss_pred hhhhhhHhhcCCccHHHhhhhheecCCC-CCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCC----------
Confidence 026899999999999995 99999999999999999999999999998654433222210
Q ss_pred cCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEeccccc
Q 003108 170 CQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKE 220 (847)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~ 220 (847)
.|+ .-++.+||||+|+|.+.+.
T Consensus 424 -------------~~~----------------~~s~tnaymlmyr~id~kr 445 (1203)
T KOG4598|consen 424 -------------SGW----------------NQSNTNAYMLMYRRIDPKR 445 (1203)
T ss_pred -------------CCc----------------cccCcchhhhhhhhcCccc
Confidence 011 2368999999999998654
No 11
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.8e-30 Score=286.76 Aligned_cols=145 Identities=37% Similarity=0.659 Sum_probs=131.1
Q ss_pred CCcceeEEeeCCCC---------------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEee
Q 003108 1 MEDFYELELNVKGL---------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLK 65 (847)
Q Consensus 1 ~E~F~~LsL~v~~~---------------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~Lk 65 (847)
+|+|+.|+|++++. .+|++||+.|+.+|.+++.| |+|++|+.++++.|+..|.+||++|+|||+
T Consensus 147 ~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lk 225 (328)
T cd02660 147 VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLK 225 (328)
T ss_pred ecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEE
Confidence 47899999999875 89999999999999999888 999999999999999999999999999999
Q ss_pred eeEEecCCCceeccCceeeeceeeccccccCC---------CCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEE
Q 003108 66 RCVFLPKTTMKKKITSPFCFPGELNMQRRLSE---------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 136 (847)
Q Consensus 66 RF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~---------~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~ 136 (847)
||.|+.. +...|+++.|.||.+|||.+|+.. .......|+|+|||+|.|+ .++|||++|+|+. +++||
T Consensus 226 Rf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~-~~~W~ 302 (328)
T cd02660 226 RFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQG-DGQWF 302 (328)
T ss_pred eEEecCC-CCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECC-CCcEE
Confidence 9999864 567899999999999999999874 1223789999999999998 5899999999973 48999
Q ss_pred EEcCCceeecCCC
Q 003108 137 EFDDEHVSNLGHH 149 (847)
Q Consensus 137 ~fnD~~Vt~v~~~ 149 (847)
.|||+.|++++.+
T Consensus 303 ~~nD~~V~~~~~~ 315 (328)
T cd02660 303 KFDDAMITRVSEE 315 (328)
T ss_pred EEECCeeEECCHH
Confidence 9999999999843
No 12
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.5e-30 Score=284.66 Aligned_cols=142 Identities=28% Similarity=0.456 Sum_probs=128.4
Q ss_pred CCcceeEEeeCCCC---CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCcee
Q 003108 1 MEDFYELELNVKGL---KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKK 77 (847)
Q Consensus 1 ~E~F~~LsL~v~~~---~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~ 77 (847)
+|+|++|+|+|++. .+|++||..+++++.. ..|+.|+....++|+.+|.++|++|+|||+||.|+...+...
T Consensus 143 ~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~ 217 (305)
T cd02657 143 TESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKA 217 (305)
T ss_pred cccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCcee
Confidence 48999999999875 6899999999987754 479999999999999999999999999999999998778889
Q ss_pred ccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003108 78 KITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (847)
Q Consensus 78 Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~ 151 (847)
|+++.|.||.+|||.+|+.. ...|+|+|||+|.|.++++|||+||+|+..++.||+|||+.|+.++...+
T Consensus 218 Ki~~~v~fP~~Ldl~~~~~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v 287 (305)
T cd02657 218 KILRKVKFPFELDLYELCTP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDI 287 (305)
T ss_pred ecCcEEECCceEecccccCC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHH
Confidence 99999999999999999873 56899999999999877999999999986558999999999999986544
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=5.5e-30 Score=278.84 Aligned_cols=144 Identities=33% Similarity=0.702 Sum_probs=134.1
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+|+.|+|++++..+|+++|+.|+.+|.++|+++|.|++|++++.+.++..|.++|++|+|||+||.|+ ...|++
T Consensus 148 ~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~ 223 (304)
T cd02661 148 YDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKIN 223 (304)
T ss_pred cccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccC
Confidence 3789999999999899999999999999999999999999999999999999999999999999999987 457999
Q ss_pred ceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
+.|.||.+|||.+|+.........|+|+|||+|.|.++++|||++|+|+ .++.||.|||+.|++++.+
T Consensus 224 ~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~V~~v~~~ 291 (304)
T cd02661 224 KQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIE 291 (304)
T ss_pred CeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCeeEECCHH
Confidence 9999999999999998755557899999999999998899999999998 5789999999999999743
No 14
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=6.6e-30 Score=267.02 Aligned_cols=132 Identities=29% Similarity=0.443 Sum_probs=115.9
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|++|+|+|++..+|++||+.|+.+|.+++++.++ ...+.++..|.+||+||+||||||.|+. +...|++
T Consensus 79 ~E~F~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~ 150 (228)
T cd02665 79 CETFGQYPLQVNGYGNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIH 150 (228)
T ss_pred cCccEEEEEEECCCCCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECC
Confidence 4899999999999999999999999999999855332 3456777889999999999999999986 5678999
Q ss_pred ceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFG 152 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~ 152 (847)
+.|.||.+| ....|+|+|||+|.|. +++|||++|+|+..++.||+|||+.|++++.+.+.
T Consensus 151 ~~v~FP~~l-----------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~ 210 (228)
T cd02665 151 DKLEFPQII-----------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVE 210 (228)
T ss_pred EEEEeeCcc-----------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHh
Confidence 999999887 1468999999999999 69999999999866899999999999999865443
No 15
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.96 E-value=4.2e-30 Score=226.05 Aligned_cols=103 Identities=36% Similarity=0.468 Sum_probs=101.1
Q ss_pred cccccccccccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecccccc
Q 003108 733 DRRASKRSRKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEH 812 (847)
Q Consensus 733 ~~r~s~R~r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~~~~~ 812 (847)
++|||+|+|+..++++|+|++++||.+||.+||.+|||||++|+|+++|+.|.||++||++|||.+||+|+|.+++
T Consensus 3 ~irrs~r~r~~~~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide---- 78 (107)
T cd01795 3 VIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE---- 78 (107)
T ss_pred ccchhhhhccCCCCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC----
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccch-hhcccccccccccccccccccc
Q 003108 813 RDIADE-LSDQKMNVQHVEEGFRGTLLTS 840 (847)
Q Consensus 813 ~~i~d~-~~~~~~~~~~~e~gF~gt~l~~ 840 (847)
|++|+ ++||.++|+||||||+||+|+|
T Consensus 79 -P~~d~~~~~~~~~~~~~~~~~~~~~~~~ 106 (107)
T cd01795 79 -PIADYAAMDDVMQVCMPEEGFKGTGLLG 106 (107)
T ss_pred -CcccHHHHHHHHHhcCcccccccccccC
Confidence 99999 8899999999999999999998
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=4.4e-29 Score=261.50 Aligned_cols=146 Identities=34% Similarity=0.593 Sum_probs=131.0
Q ss_pred CCcceeEEeeCCCC------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCC
Q 003108 1 MEDFYELELNVKGL------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTT 74 (847)
Q Consensus 1 ~E~F~~LsL~v~~~------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~ 74 (847)
.|+|+.|+|+++.. .||+++|+.|+.+|.++|+++|.|++|+.++.+.|+..|.++|++|+|||+||.++. +
T Consensus 64 ~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~ 141 (230)
T cd02674 64 FEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--G 141 (230)
T ss_pred ecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--C
Confidence 37899999999864 499999999999999999999999999999999999999999999999999999976 6
Q ss_pred ceeccCceeeece-eeccccccCC-CCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 75 MKKKITSPFCFPG-ELNMQRRLSE-PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 75 ~~~Ki~~~V~fP~-~Ldl~~~~~~-~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
...|+++.|.||. .|||.+|+.. .......|+|+|||+|.|.. ++|||++|+|...++.||.|||+.|++++.+
T Consensus 142 ~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~ 217 (230)
T cd02674 142 STRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217 (230)
T ss_pred CcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHH
Confidence 6789999999996 5999998532 22237899999999999997 9999999999865689999999999999843
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=9e-29 Score=262.21 Aligned_cols=124 Identities=34% Similarity=0.659 Sum_probs=113.4
Q ss_pred CCcceeEEeeCCCC-----CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCc
Q 003108 1 MEDFYELELNVKGL-----KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (847)
Q Consensus 1 ~E~F~~LsL~v~~~-----~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~ 75 (847)
.|+|++|+|+|++. .+|++||+.|+.+|.++| |.|++| +..|.++|++|+|||+||.|+.. +.
T Consensus 77 ~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~-~~ 144 (240)
T cd02662 77 YESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGR-GT 144 (240)
T ss_pred eeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-Cc
Confidence 47999999999875 599999999999999987 999999 67899999999999999999976 77
Q ss_pred eeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEec--------------------CCCcE
Q 003108 76 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------------------NTGQW 135 (847)
Q Consensus 76 ~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~--------------------~~~~W 135 (847)
..|+++.|.||..| ....|+|+|||+|.|++ ++|||++|+|+. ..+.|
T Consensus 145 ~~K~~~~v~fp~~l-----------~~~~Y~L~avi~H~G~~-~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W 212 (240)
T cd02662 145 STKNSCKVSFPERL-----------PKVLYRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPW 212 (240)
T ss_pred eeeeccEEECCCcc-----------CCceEEEEEEEEEeccC-CCceEEEEEeCCCcccccccccccccccccCccCCCE
Confidence 89999999999988 26789999999999996 999999999985 34899
Q ss_pred EEEcCCceeecCC
Q 003108 136 WEFDDEHVSNLGH 148 (847)
Q Consensus 136 ~~fnD~~Vt~v~~ 148 (847)
|+|||+.|++++.
T Consensus 213 ~~fnD~~V~~v~~ 225 (240)
T cd02662 213 WRISDTTVKEVSE 225 (240)
T ss_pred EEEechheEEeCH
Confidence 9999999999974
No 18
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=6.9e-28 Score=264.48 Aligned_cols=132 Identities=36% Similarity=0.568 Sum_probs=117.6
Q ss_pred CCcceeEEeeCCCC--------------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeee
Q 003108 1 MEDFYELELNVKGL--------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKR 66 (847)
Q Consensus 1 ~E~F~~LsL~v~~~--------------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkR 66 (847)
.|+|++|+|+++.. .+|++||+.|+.+|.++ ++|++|+.+++|.|+.+|.+||++|+|||+|
T Consensus 150 ~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkR 225 (311)
T cd02658 150 SELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKR 225 (311)
T ss_pred ecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEE
Confidence 37899999998743 39999999999999997 6899999999999999999999999999999
Q ss_pred eEEecCCCceeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEec--CCCcEEEEcCCcee
Q 003108 67 CVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--NTGQWWEFDDEHVS 144 (847)
Q Consensus 67 F~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~--~~~~W~~fnD~~Vt 144 (847)
|.|+. ++...|++..|.||..| ....|+|+|||+|.|.++++|||++|+|.. .+++||.|||+.|+
T Consensus 226 F~~~~-~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~ 293 (311)
T cd02658 226 FQLLE-NWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVV 293 (311)
T ss_pred EEecC-CCceEeeccccccCCcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeE
Confidence 99974 45678999999999877 146799999999999878999999999975 34899999999999
Q ss_pred ecCC
Q 003108 145 NLGH 148 (847)
Q Consensus 145 ~v~~ 148 (847)
+++.
T Consensus 294 ~~~~ 297 (311)
T cd02658 294 ASQD 297 (311)
T ss_pred ECCc
Confidence 9874
No 19
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=2.3e-28 Score=280.52 Aligned_cols=144 Identities=21% Similarity=0.316 Sum_probs=118.9
Q ss_pred CCcceeEEeeCCCCCC-----HHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCc
Q 003108 1 MEDFYELELNVKGLKT-----LDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~s-----L~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~ 75 (847)
+|+|++|+|+|+.... ...+|.++...|.|+ +|.|+.|....+++|+++|.+||+||+||||||.++. +.
T Consensus 275 ~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~ 349 (440)
T cd02669 275 VSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FF 349 (440)
T ss_pred eccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--Cc
Confidence 3799999999987422 122333444444444 3889999989999999999999999999999999974 56
Q ss_pred eeccCceeeecee-eccccccCCCC---CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 76 KKKITSPFCFPGE-LNMQRRLSEPS---QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 76 ~~Ki~~~V~fP~~-Ldl~~~~~~~~---~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
..|+++.|.||.. |||.+|+..+. .....|+|+|||+|.|+.+++|||++|+|+..+++||+|||+.|++++.+
T Consensus 350 ~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~ 427 (440)
T cd02669 350 KEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQ 427 (440)
T ss_pred cccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHH
Confidence 7899999999997 89999986432 23789999999999999669999999999866899999999999999743
No 20
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=6.7e-27 Score=246.41 Aligned_cols=121 Identities=22% Similarity=0.380 Sum_probs=105.5
Q ss_pred CcceeEEeeCC---CCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 2 EDFYELELNVK---GLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 2 E~F~~LsL~v~---~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
|.|+.|+++.. +..||++||+.|++.|. |.++|++|+||||||.|+. +...|
T Consensus 64 e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~~~~K 118 (241)
T cd02670 64 ERLLQIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--GKAQK 118 (241)
T ss_pred cceEEeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--Cccee
Confidence 67888888874 35799999999999986 8899999999999999976 66789
Q ss_pred cCceeeeceeeccccccCCCC----------------------CCCceeEEeEEEeeeccccCCceEEEEEEecC-----
Q 003108 79 ITSPFCFPGELNMQRRLSEPS----------------------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----- 131 (847)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~~----------------------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~----- 131 (847)
+++.|.||..|||.+|+.... .....|+|+|||+|.|+++++|||+||+|+..
T Consensus 119 l~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~ 198 (241)
T cd02670 119 MFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTE 198 (241)
T ss_pred CCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccc
Confidence 999999999999999986531 12579999999999998889999999999865
Q ss_pred ------CCcEEEEcCCceeecC
Q 003108 132 ------TGQWWEFDDEHVSNLG 147 (847)
Q Consensus 132 ------~~~W~~fnD~~Vt~v~ 147 (847)
++.||+|||..|+.+.
T Consensus 199 ~~~~~~~~~W~~FDD~~v~~~~ 220 (241)
T cd02670 199 TDNEAYNAQWVFFDDMADRDGV 220 (241)
T ss_pred cccCCCCCeEEEecCccccccc
Confidence 3799999999988765
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1.2e-26 Score=246.30 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=109.8
Q ss_pred CCcceeEEeeCCC--CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 1 MEDFYELELNVKG--LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 1 ~E~F~~LsL~v~~--~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
+|+|++|+|+++. ..+|++++..|+..+.++ |.|++|+.+ .+.|+.+|.++|+||+||||||.|........|
T Consensus 94 ~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~ 168 (245)
T cd02673 94 SDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATSDYLK 168 (245)
T ss_pred ccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeeccccccccc
Confidence 4889999999987 467889999999888775 899999975 889999999999999999999987643222222
Q ss_pred cCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecC-CCcEEEEcCCceeecCCC
Q 003108 79 ITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-TGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~-~~~W~~fnD~~Vt~v~~~ 149 (847)
+ ..++|.+|... ...|+|+|||+|.|.++++|||+||+|+.. ++.||.|||+.|++++.+
T Consensus 169 ~-------~~~~~~~~~~~----~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~ 229 (245)
T cd02673 169 K-------NEEIMKKYCGT----DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKN 229 (245)
T ss_pred c-------cccccccccCC----CceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHH
Confidence 2 24567777652 567999999999998789999999999865 689999999999999854
No 22
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-27 Score=263.93 Aligned_cols=134 Identities=27% Similarity=0.490 Sum_probs=122.8
Q ss_pred CCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeece-eecc
Q 003108 13 GLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPG-ELNM 91 (847)
Q Consensus 13 ~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl 91 (847)
...||++||..|.++|+|.-.+.|+|+.|+..+.|+|++.|+++|.+|+||||||.++. ..+.|+.+-|+||. .|||
T Consensus 673 rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVeyPiddldL 750 (823)
T COG5560 673 RTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEYPIDDLDL 750 (823)
T ss_pred CCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhccccccccc
Confidence 35799999999999999999999999999999999999999999999999999999765 56789999999997 5999
Q ss_pred ccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 92 QRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 92 ~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
+.+...-.+....|+|+||=.|.|. +.+|||+||+|+..+++||.|||+.|++++.+
T Consensus 751 s~~~~~~~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdpe 807 (823)
T COG5560 751 SGVEYMVDDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPE 807 (823)
T ss_pred cceEEeecCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCcc
Confidence 9887655444689999999999999 59999999999998999999999999999854
No 23
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-26 Score=285.73 Aligned_cols=670 Identities=22% Similarity=0.176 Sum_probs=357.1
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
.|+|++|.|+++|..+|.++|..|++.|.|+|||+ +|..|+..+.|.|...+.+||+||.|||+||.|+..++...|++
T Consensus 304 ~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~ 382 (1093)
T KOG1863|consen 304 SESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKIN 382 (1093)
T ss_pred cccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehh
Confidence 38999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceeeeceeeccccccCC--C--CCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSE--P--SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSS 156 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~--~--~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~ 156 (847)
+++.||..|+|.+|+.. . ....+.|+|.||++|.|. +++|||++|+++...+.|++|||..|+.++...+.+..+
T Consensus 383 d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~ 461 (1093)
T KOG1863|consen 383 DKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNY 461 (1093)
T ss_pred hccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhC
Confidence 99999999999999874 1 122459999999999777 699999999998889999999999999998665554444
Q ss_pred CCCCccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEecccccccccccccccccchhh
Q 003108 157 SSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEI 236 (847)
Q Consensus 157 ~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~ 236 (847)
++... . .........||||+|.|.+....--. +.
T Consensus 462 g~~~~-------------------~-----------------~~~~~~~~~~~~lv~~~~s~~~~~~~-----~v----- 495 (1093)
T KOG1863|consen 462 GTEEI-------------------E-----------------LSSTADFKNAYMLVYIRDSCESKILK-----DI----- 495 (1093)
T ss_pred CCcch-------------------h-----------------hhcccccCCcceEEEEecCcHHhhhc-----cc-----
Confidence 33110 0 00011223399999999875432110 00
Q ss_pred hhhhhccCCCCCCChHHHHHHHHHHH--------------------------------H-H--HHHHHHHHHhhhhhhhh
Q 003108 237 ESEMIFFNDDIFLPSHLGKDIKELNR--------------------------------S-Y--LDGCEQFKLRKNRELDC 281 (847)
Q Consensus 237 ~~~~~~~~~~~~lP~~l~~~I~~~N~--------------------------------~-f--~~~~~~~~~~k~~~~~~ 281 (847)
..-.+|.++.+....... . + +...++|...|....+.
T Consensus 496 --------~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 567 (1093)
T KOG1863|consen 496 --------SESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHGFDVEDELYEPEQYRTLRAAKIEE 567 (1093)
T ss_pred --------chhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhccchHhhhhcccccchHHHHHhhhh
Confidence 000122222221111111 0 0 12344455555444444
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhccCCCCCCCccccccCCCCCCCCccccccccHHHHHHHHHhcC
Q 003108 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKIFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWNKFFFKYN 361 (847)
Q Consensus 282 ~~e~r~eVr~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~~P~pIdN~~llC~Hg~l~p~k~~~~krIs~~aw~~L~~~yg 361 (847)
+.+..+. ++.....+......+|.-..|+ .....+...+|..-+|.|....+.++.. ++--.|..+...--
T Consensus 568 ~~eli~~---~~~~~~~~~~~~~~~w~~~~r~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 638 (1093)
T KOG1863|consen 568 LSELITR---LLGEFELPPSVQPRLWPLGYRN---NLTVLPQYLFNIAPLRSYILDITEKVLN---DLWHEYLELAVEEI 638 (1093)
T ss_pred HHHHHHH---HHhhccCCccccchhhhhhccc---cceEeeecccccchhhhhhhhhhhhhcc---chHHHHHHHHhhhc
Confidence 4433332 3333443333345566665555 2223455788999999999988887544 44445555555555
Q ss_pred CCCCCCc---------hhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhhhcCCCcCceeEeehHHHHHHHHhccCCCC
Q 003108 362 GGPALTN---------DDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGTYYVSKSWLQQWTRRKNLDAP 432 (847)
Q Consensus 362 GgP~l~~---------~~~C~~C~~~~~~~~~~~~~~~~rr~~~~~v~~~~~~~~~~~~~y~ISk~WLr~W~~~~~~~~P 432 (847)
|++.+.. ..++-.+....++.+. ++-...|...|+.......+
T Consensus 639 ~~~~~~~~~~~~~~~~~~lf~k~y~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 690 (1093)
T KOG1863|consen 639 GGNEVRRLPSFQFTRDLLLFLKMYDDRKRSVT----------------------------PSGELAYLALTPLRLLQVLL 690 (1093)
T ss_pred CcccccccccccchHHHHHHHHHhcccccccc----------------------------chhhccccccCchhhhhhhh
Confidence 5554432 0111111111111111 11122222222110110000
Q ss_pred CCCCCCCCceeecCCCCccCCccCCCceeeecHHHHHHHHHhhhccCCCCCCCCCcCC-CCCCCchhhHHHHhhhhchHH
Q 003108 433 SEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFP-LDSEECPECSDALSEVACLED 511 (847)
Q Consensus 433 ~~iDn~~n~dilC~Hg~L~~~~~~~~~~~~V~~~~W~~L~~~~~~~gP~~~~~~~~f~-~~~~~C~~C~~~~~~~~~~~~ 511 (847)
....+.+..+-++.+..+.+.+....+.....+..|..-... ++...-....+ .+...+..+..+..+....+.
T Consensus 691 ~e~~~~~~d~~~~~~~e~~~~~~~~id~~~~~~~~~~~~~~d-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1093)
T KOG1863|consen 691 NELIGVVDDTSTREYSELKEEKDERIDKIAEEKSFDLSELED-----GDISVVEEEAASKDSESNRADVSEFLENVENRT 765 (1093)
T ss_pred hhhcccCCccchHHHHHhcchhhhcchhhhhhhhhhhhhhhc-----CCeeeecccccCCcccccccchHHHHHHHHHHH
Confidence 000000001112222223222211122222222222222111 11100001111 234444444433332211111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCCCCCC-CCCCccccccccccccccccccccCC
Q 003108 512 SIRARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGKNAS-SIEPEILDGVIDSLKCEKHLRLLERP 590 (847)
Q Consensus 512 ~~r~~~~~~r~~~~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~p~k~~~-~~~P~~ldn~~~~llC~~H~~Ll~~~ 590 (847)
..+-.+...-.... .........+-.-+..++-.|+.-+........ ...|-....++..++|..+.+++..+
T Consensus 766 ~~~~~~~~~~~~~~------~f~l~~~~~~~~~~~~~~v~~~l~~~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 839 (1093)
T KOG1863|consen 766 LQRFRKVSSEIEEN------SFVLGRQQRVTECILAVLVQLALGKDPISIDSDRAEYDLEKIRFNGTVKLSQVLLDATQL 839 (1093)
T ss_pred HHHHhccccccccc------ccccchhhhhhhhHHHHHHHHHhcCCchhccccccCCchhhccccCcceeeccccccccc
Confidence 11111100000000 011111111122233455566555543332211 22332344455778884444444444
Q ss_pred CccccccccccccCCCCCceeeeCHhHHHHHHHHhCCCcccceEE-EEeecCCCCcccccccchhcccCCCCCCCCCccc
Q 003108 591 PDLVCKRGSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSV-IVDFSNNAGNELVGSCKEILLSEEPCGPRDEENN 669 (847)
Q Consensus 591 ~~~~~~~g~~~q~~~~~~~~~~I~~~~W~~l~~~y~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (847)
......+.......-...++.++-..+|+.+...|..+...++.. ++.+ +..+...+.++.-.....+.+. .
T Consensus 840 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~k~~~i~~d~~~~~~~~~~~~~--~ 912 (1093)
T KOG1863|consen 840 VRDPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWLVDMENGVEIMTLAV-----TKLGTILPDILREVYDRVPLDP--F 912 (1093)
T ss_pred cccccccccccceecccCCcceeccccccccchhhhccccccchhhheec-----cccchhhHHHHHHHHhhcccCc--c
Confidence 332222322222333466788889999999999999887665522 1111 1111111122221111111111 1
Q ss_pred cccCCCceeecCccchhhHHhHhHHHHHhhhhcccCceeEEEEecCCCCCccccccccCCC-CCcccccccccc--cCce
Q 003108 670 EIESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMF-EPDRRASKRSRK--TRSF 746 (847)
Q Consensus 670 ~~~~~~~~~~t~p~~C~~C~~~~~~~~~~~~~~Y~~~~i~V~~v~~~~~~~~~~~~s~~~~-~~~~r~s~R~r~--~~~~ 746 (847)
..+.-.+.-.+.++++.+|......+++.....+..+--.=...+|++++......+..++ .-.+..+++.+. .+..
T Consensus 913 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~ 992 (1093)
T KOG1863|consen 913 KSDAFRLFEVTSMKLYKETSYQKLLEELNQSYQSFELLLRDLFLRGESVPLLEILSSKGAPKLELVIHFSKELVQNIGNE 992 (1093)
T ss_pred cccceeEEeecchHHHHhccchhHHHHHhHHHhhHHhhhcccccccccCcHHHHhhcccccceeehhhcchhhhhhcchh
Confidence 1122244566778888888888887777665443200000044566777665443332211 223344444442 2356
Q ss_pred EEEEecCCccHHHHHHHHHHHhC-CCCCCceE-EeCC
Q 003108 747 VNLKVSASTSIYQLKMMIWESLG-VVKENQIL-HKGQ 781 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~g-i~p~~Q~L-~~~G 781 (847)
+.+.+...+++..+|.+++..++ ++-....+ .|.|
T Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~ 1029 (1093)
T KOG1863|consen 993 LNLLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAG 1029 (1093)
T ss_pred hHHHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhh
Confidence 66778899999999999999999 88888866 3555
No 24
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=1e-25 Score=242.27 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=124.0
Q ss_pred CCcceeEEeeCCC-----CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCC----eEEEEeeeeEEec
Q 003108 1 MEDFYELELNVKG-----LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPD----VLNFQLKRCVFLP 71 (847)
Q Consensus 1 ~E~F~~LsL~v~~-----~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~----vLii~LkRF~~d~ 71 (847)
+++|++|+|+++. ..+|.+||+.|+++|.. |+|.|++|++++.|.|+.+|.+||+ ||+||||||.++.
T Consensus 98 ~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~ 174 (268)
T cd02672 98 VSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEF 174 (268)
T ss_pred cccceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhh
Confidence 4789999999984 46999999999999854 5699999999999999999999999 9999999999754
Q ss_pred CC-----CceeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecC----CCcEEEEcCCc
Q 003108 72 KT-----TMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----TGQWWEFDDEH 142 (847)
Q Consensus 72 ~~-----~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~----~~~W~~fnD~~ 142 (847)
.. ....|++..|.||..+++..+..........|+|+|||+|.|.+.++|||+||+|... .++||.|||..
T Consensus 175 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~ 254 (268)
T cd02672 175 DDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFL 254 (268)
T ss_pred cccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeE
Confidence 22 2356888999999988887766555444789999999999998669999999999753 57999999999
Q ss_pred eeecC
Q 003108 143 VSNLG 147 (847)
Q Consensus 143 Vt~v~ 147 (847)
|++++
T Consensus 255 V~~vs 259 (268)
T cd02672 255 VTPVS 259 (268)
T ss_pred EEEcC
Confidence 99986
No 25
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-25 Score=229.15 Aligned_cols=142 Identities=27% Similarity=0.488 Sum_probs=111.6
Q ss_pred CCcceeEEeeCCCC--CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 1 MEDFYELELNVKGL--KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 1 ~E~F~~LsL~v~~~--~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
+.+|..|.+++... ..|+|||..|.++|.|+|+++|.|++|++++.++|++.|.+||++|||||+||...- +.++|
T Consensus 248 ~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V--~~~~k 325 (415)
T COG5533 248 IAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISV--MGRKK 325 (415)
T ss_pred EeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEe--ecccc
Confidence 35788999998763 458999999999999999999999999999999999999999999999999998422 23344
Q ss_pred cCceee----eceeeccccccCCCCC-CCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003108 79 ITSPFC----FPGELNMQRRLSEPSQ-LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (847)
Q Consensus 79 i~~~V~----fP~~Ldl~~~~~~~~~-~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~ 147 (847)
+++.-. ||-+....+-.....+ .+.+|+|+|||+|.|+ +++|||+++|+. ++.|+.|||+.|++++
T Consensus 326 iD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~--~~~W~~~dDs~vr~~~ 396 (415)
T COG5533 326 IDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR--SGTWNVYDDSQVRKGS 396 (415)
T ss_pred cCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeee--cCceEEechhheeecc
Confidence 444322 2222111111111111 2689999999999999 799999999995 6999999999999987
No 26
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.3e-25 Score=257.46 Aligned_cols=144 Identities=30% Similarity=0.548 Sum_probs=128.0
Q ss_pred CCcceeEEeeCCC------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeE--EEEEEeecCCeEEEEeeeeEEecC
Q 003108 1 MEDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDAT--RSIKLRSLPDVLNFQLKRCVFLPK 72 (847)
Q Consensus 1 ~E~F~~LsL~v~~------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~--k~~~i~~lP~vLii~LkRF~~d~~ 72 (847)
|++|++|+|+|+. ..+|.+|+..|++.|+|+|+|+|.|++|+.+..+. |++.|.+||++|++||+||.++.
T Consensus 477 ~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~- 555 (653)
T KOG1868|consen 477 FETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDG- 555 (653)
T ss_pred eecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCc-
Confidence 5789999999964 24599999999999999999999999999998885 99999999999999999999875
Q ss_pred CCceeccCceeeece-eeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003108 73 TTMKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (847)
Q Consensus 73 ~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~ 147 (847)
+...|....|.||. .+|+.++..........|+|+||++|.|+ +++|||+||+++...+.|+.|||+.|+.+.
T Consensus 556 -~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~ 629 (653)
T KOG1868|consen 556 -NSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPIS 629 (653)
T ss_pred -ccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccc
Confidence 45679999999998 47888776666555677999999999996 799999999998778899999999999665
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=5.3e-24 Score=221.40 Aligned_cols=143 Identities=34% Similarity=0.628 Sum_probs=122.6
Q ss_pred cceeEEeeCCC----CCCHHHHHHhhccceEecCCCccccCCCC--CeeeeEEEEEEeecCCeEEEEeeeeEEecCCCce
Q 003108 3 DFYELELNVKG----LKTLDESLDDYLSVEELHGDNQYFCDSCG--TRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (847)
Q Consensus 3 ~F~~LsL~v~~----~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~--~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~ 76 (847)
.|..++|+++. ..+|+++|+.++..|.+++ +.|..|+ ..+.+.++..|.++|++|+|||+||.++.. +..
T Consensus 83 ~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~ 158 (255)
T cd02257 83 PELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTK 158 (255)
T ss_pred cceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-ccc
Confidence 34455555543 5799999999999999987 7788887 688999999999999999999999998753 567
Q ss_pred eccCceeeeceeeccccccCC------CCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 77 KKITSPFCFPGELNMQRRLSE------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 77 ~Ki~~~V~fP~~Ldl~~~~~~------~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
.|++..|.||.+|++.+++.. .......|+|+|||+|.|.++++|||++|+|+..++.||.|||..|+.++..
T Consensus 159 ~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~ 237 (255)
T cd02257 159 EKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEE 237 (255)
T ss_pred ccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHH
Confidence 899999999999999988752 2223789999999999999889999999999865699999999999999854
No 28
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-24 Score=244.40 Aligned_cols=145 Identities=34% Similarity=0.633 Sum_probs=130.1
Q ss_pred CCcceeEEeeCCCC----------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEe
Q 003108 1 MEDFYELELNVKGL----------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFL 70 (847)
Q Consensus 1 ~E~F~~LsL~v~~~----------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d 70 (847)
+++|++|+|+|+.. .++.+|+..|...+.+..+.+|.|..|+.++.++|+..+.++|.+|.+||+||.+.
T Consensus 310 ~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~ 389 (492)
T KOG1867|consen 310 YDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHS 389 (492)
T ss_pred ccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccc
Confidence 47999999999753 56999999999999998899999999999999999999999999999999999998
Q ss_pred cCCCceeccCceeeeceeeccccccCCCC-----CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceee
Q 003108 71 PKTTMKKKITSPFCFPGELNMQRRLSEPS-----QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSN 145 (847)
Q Consensus 71 ~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~-----~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~ 145 (847)
..... .|+.+.|.||..|+|.+|+..+. .....|+|.|||+|+|. .++|||+||.|. .+.||+|||+.|+.
T Consensus 390 ~~~~~-~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~--~~~~~~~dDs~v~~ 465 (492)
T KOG1867|consen 390 ATGAR-EKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ--SGGWFKCDDSTVTK 465 (492)
T ss_pred ccccc-cccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe--CCCcEEEcCeEEEE
Confidence 65444 49999999999999999987521 12689999999999999 799999999996 78999999999999
Q ss_pred cCCC
Q 003108 146 LGHH 149 (847)
Q Consensus 146 v~~~ 149 (847)
++..
T Consensus 466 ~s~~ 469 (492)
T KOG1867|consen 466 VSEE 469 (492)
T ss_pred eeHH
Confidence 9854
No 29
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-23 Score=243.46 Aligned_cols=154 Identities=32% Similarity=0.597 Sum_probs=139.3
Q ss_pred CcceeEEeeCC--CCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceecc
Q 003108 2 EDFYELELNVK--GLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (847)
Q Consensus 2 E~F~~LsL~v~--~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki 79 (847)
|.|.++++++. ...++..+|..|..+|.|.|+|+|+|++|...++|.|++.++++|.+|+||||||.|+.......|+
T Consensus 406 e~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl 485 (587)
T KOG1864|consen 406 EGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKL 485 (587)
T ss_pred ccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccc
Confidence 68999999998 5899999999999999999999999999999999999999999999999999999999877778999
Q ss_pred CceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCC
Q 003108 80 TSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSS 156 (847)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~ 156 (847)
...|.||.+|.+...+.........|+|+|||+|.|.+++.|||+||+|.. .-.|+.|||+.|+.++.+++.+..+
T Consensus 486 ~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nWl~fdD~~V~~~s~~~v~~~~~ 561 (587)
T KOG1864|consen 486 LYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNWLLFDDDNVEPISEEPVSEFTG 561 (587)
T ss_pred ccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCceecccccccccCcchhhhccC
Confidence 999999999999877766554357999999999999999999999999973 3349999999999999776655433
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.2e-24 Score=259.29 Aligned_cols=131 Identities=31% Similarity=0.576 Sum_probs=122.2
Q ss_pred CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeecee-eccc
Q 003108 14 LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGE-LNMQ 92 (847)
Q Consensus 14 ~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~-Ldl~ 92 (847)
..+|++||+.|+.+|.|.-+++|+|+.|+.++.|+|+..+++||+||+||||||.|.. ....|+.+.|+||.. ||++
T Consensus 695 ~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s 772 (842)
T KOG1870|consen 695 PNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLS 772 (842)
T ss_pred cccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcc
Confidence 5699999999999999999999999999999999999999999999999999999976 455899999999984 9999
Q ss_pred cccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 93 RRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 93 ~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
+|+..... ..|+|+||.+|.|. +.+|||+||+|+..+++||.|||+.|++++..
T Consensus 773 ~~~~~~~~--~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~ 826 (842)
T KOG1870|consen 773 EFVVNKEQ--VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDED 826 (842)
T ss_pred hhhccCcc--ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChh
Confidence 99988764 89999999999999 69999999999988899999999999997643
No 31
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.86 E-value=1.9e-21 Score=205.40 Aligned_cols=109 Identities=37% Similarity=0.710 Sum_probs=92.8
Q ss_pred ccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeec-eeeccccccCCCCC---CCceeEEeEE
Q 003108 35 QYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFP-GELNMQRRLSEPSQ---LDLIYDLSAV 110 (847)
Q Consensus 35 ~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP-~~Ldl~~~~~~~~~---~~~~Y~L~aV 110 (847)
.+.|..|+.. ...|.++|++|+|||+||.|+..++...|+.+.|.|| .+|||.+++..... ....|+|+||
T Consensus 142 ~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~av 216 (269)
T PF00443_consen 142 SIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAV 216 (269)
T ss_dssp EEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEE
T ss_pred cccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhh
Confidence 4889999976 7889999999999999999998888899999999999 69999999877653 2589999999
Q ss_pred EeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 111 I~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
|+|.|+ .++|||+||+|+..++.||+|||+.|++++.+
T Consensus 217 i~H~G~-~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~ 254 (269)
T PF00443_consen 217 IVHYGS-ADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWE 254 (269)
T ss_dssp EEEESS-TTSEEEEEEEEETTTTEEEEEETTEEEEESHH
T ss_pred hccccc-cccceEEEeeccccCCeEEEeeCCceEECCHH
Confidence 999994 79999999999976678999999999999843
No 32
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.9e-22 Score=226.19 Aligned_cols=136 Identities=24% Similarity=0.459 Sum_probs=115.9
Q ss_pred CCCCCHHHHHHhhccceEecCCCccccCCCCC------e---------------------eeeEEEEEEeecCCeEEEEe
Q 003108 12 KGLKTLDESLDDYLSVEELHGDNQYFCDSCGT------R---------------------VDATRSIKLRSLPDVLNFQL 64 (847)
Q Consensus 12 ~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~------~---------------------~~a~k~~~i~~lP~vLii~L 64 (847)
.+..|++.||.+|+..|.|.|+|+|.|++|-+ . ..|.|...|..+||||+|||
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihl 754 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHL 754 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehH
Confidence 34679999999999999999999999999976 1 13567888999999999999
Q ss_pred eeeEEecCCCceeccCceeeeceeeccccccCCCCC-----CCceeEEeEEEeeeccccCCceEEEEEEec---------
Q 003108 65 KRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQ-----LDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------- 130 (847)
Q Consensus 65 kRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~-----~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~--------- 130 (847)
|||..+. .+...|++..+.|++.+||.+|+..... ....|+|+|||.|.|+ +.+|||++|+|..
T Consensus 755 Krf~q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~ 832 (877)
T KOG1873|consen 755 KRFFQDI-RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPS 832 (877)
T ss_pred hhhhhhh-hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCcc
Confidence 9998775 4557899999999999999998754221 2679999999999999 5999999999851
Q ss_pred -----------CCCcEEEEcCCceeecCCC
Q 003108 131 -----------NTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 131 -----------~~~~W~~fnD~~Vt~v~~~ 149 (847)
..+.||.+.|+.|.+++..
T Consensus 833 ~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d 862 (877)
T KOG1873|consen 833 NSKDFESDAGIPSGRWYYISDSIVREVSLD 862 (877)
T ss_pred ccccchhccCCCCcceEEecchheecccHH
Confidence 3579999999999999754
No 33
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.2e-19 Score=205.16 Aligned_cols=87 Identities=23% Similarity=0.461 Sum_probs=76.9
Q ss_pred ceeEEeeCCC------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCcee
Q 003108 4 FYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKK 77 (847)
Q Consensus 4 F~~LsL~v~~------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~ 77 (847)
=+.|.|+|+. ..++..||+.||.+ +++. |.|..|+.+..|+|.+.|.++|++|+||.+||.| ..+..+
T Consensus 456 ~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pk 529 (763)
T KOG0944|consen 456 EYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPK 529 (763)
T ss_pred heeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceee
Confidence 3567777764 45999999999999 4443 9999999999999999999999999999999999 468999
Q ss_pred ccCceeeeceeeccccccC
Q 003108 78 KITSPFCFPGELNMQRRLS 96 (847)
Q Consensus 78 Ki~~~V~fP~~Ldl~~~~~ 96 (847)
|+...|+.|+.||++.|.+
T Consensus 530 Kld~~iempe~ldls~~rs 548 (763)
T KOG0944|consen 530 KLDVSIEMPEELDLSSYRS 548 (763)
T ss_pred eeccceecchhhchhhhhh
Confidence 9999999999999998864
No 34
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.76 E-value=3.5e-19 Score=197.68 Aligned_cols=123 Identities=28% Similarity=0.430 Sum_probs=100.4
Q ss_pred CCcceeEEeeCCC----------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEe
Q 003108 1 MEDFYELELNVKG----------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFL 70 (847)
Q Consensus 1 ~E~F~~LsL~v~~----------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d 70 (847)
.|+|++|+|+|.+ ..+|++||+.||+.|. |.++|+||.|||+ ++
T Consensus 165 ~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~qlq---~~ 218 (343)
T cd02666 165 TERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQVQAQ---LA 218 (343)
T ss_pred cceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHHHHh---hc
Confidence 4899999999984 6899999999998886 8899999999999 33
Q ss_pred cCCCceeccCceeeeceeeccccccCCC----------------------------CCCCceeEEeEEEeeeccccCCce
Q 003108 71 PKTTMKKKITSPFCFPGELNMQRRLSEP----------------------------SQLDLIYDLSAVLIHKGTAVNSGH 122 (847)
Q Consensus 71 ~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~----------------------------~~~~~~Y~L~aVI~H~G~s~~sGH 122 (847)
.......+.+++.+||...|..+++... ......|+|+|||+|.|+. ++||
T Consensus 219 ~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~-~~GH 297 (343)
T cd02666 219 QPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEA-SSGH 297 (343)
T ss_pred ccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCC-CCCe
Confidence 3345556677777777766665554220 0127889999999999996 9999
Q ss_pred EEEEEEecCCCcEEEEcCCceeecCCCC
Q 003108 123 YIALIKDENTGQWWEFDDEHVSNLGHHP 150 (847)
Q Consensus 123 Y~a~vk~~~~~~W~~fnD~~Vt~v~~~~ 150 (847)
|++|+|+..++.||+|||+.|++++...
T Consensus 298 Y~~~~~~~~~~~W~~~dD~~V~~v~~~e 325 (343)
T cd02666 298 YWVYIKDFEENVWRKYNDETVTVVPASE 325 (343)
T ss_pred EEEEEEECCCCeEEEEECCeeEEecHHH
Confidence 9999999777999999999999998543
No 35
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-16 Score=172.86 Aligned_cols=90 Identities=18% Similarity=0.426 Sum_probs=76.2
Q ss_pred CcceeEEeeCCCC---CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 2 EDFYELELNVKGL---KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 2 E~F~~LsL~v~~~---~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
|+-..+.+.++++ .++.+|++.||.+++++ |.|++|+.+..|.|...|++||.+||||..||.+ ++...+|
T Consensus 445 e~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~k 518 (749)
T COG5207 445 ESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEK 518 (749)
T ss_pred cceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeec--cceeehh
Confidence 4455666666663 58999999999999999 9999999999999999999999999999999997 4577889
Q ss_pred cCceeeecee--eccccccCC
Q 003108 79 ITSPFCFPGE--LNMQRRLSE 97 (847)
Q Consensus 79 i~~~V~fP~~--Ldl~~~~~~ 97 (847)
+..++..-.. ++++.|++.
T Consensus 519 ls~pi~~~~D~m~~~~s~msk 539 (749)
T COG5207 519 LSDPIEMRSDDMIKLGSFMSK 539 (749)
T ss_pred ccCceEEccccccchhhHhhc
Confidence 9888887653 888887653
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.5e-16 Score=168.70 Aligned_cols=147 Identities=24% Similarity=0.453 Sum_probs=126.9
Q ss_pred CCcceeEEeeC--CCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 1 MEDFYELELNV--KGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 1 ~E~F~~LsL~v--~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
.+||..|.|+| .+..+++++|..+...|.+.+ |.-. -+..+.+.+++.+.+||++|++|||||.|.. ++...|
T Consensus 249 lqPF~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k 323 (420)
T KOG1871|consen 249 LQPFFTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARK 323 (420)
T ss_pred cCccceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhh
Confidence 47999999999 668899999999999999987 5554 5777899999999999999999999999975 677889
Q ss_pred cCceeeeceeeccccccCCC------CCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCC
Q 003108 79 ITSPFCFPGELNMQRRLSEP------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFG 152 (847)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~ 152 (847)
+.+.+.||-.|.+..-+..+ ......|.|.+|+-|+|.++..|||+.-+.+...+.|+.+||..|..+..+.+.
T Consensus 324 ~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~ 403 (420)
T KOG1871|consen 324 LGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVE 403 (420)
T ss_pred hchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhc
Confidence 99999999988877643321 112678999999999999999999999999988899999999999999866443
No 37
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.5e-15 Score=117.12 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=59.1
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+.+.|.++++++|+|.++|+.|+|++||||.+|||+|.|||+ +|+.|.++|++.-||+|||+
T Consensus 9 t~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm-~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQM-NDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred ccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccc-cccccHHHhhhccceeEeeC
Confidence 458999999999999999999999999999999999999999 68899999999999999985
No 38
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.51 E-value=6.3e-14 Score=153.23 Aligned_cols=125 Identities=26% Similarity=0.429 Sum_probs=110.1
Q ss_pred CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeeceeecccc
Q 003108 14 LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQR 93 (847)
Q Consensus 14 ~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~ 93 (847)
..++.++|+.++..|.... ..|++|++.+....+..|.+||+||.|.++|+..+ ..+ ..|+...+.+|..+++..
T Consensus 162 ~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~~w-~~~~~~~~~ip~~i~~~~ 236 (295)
T PF13423_consen 162 NVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-EFW-PKKNWLKIWIPPSINLPH 236 (295)
T ss_pred cchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc-ccc-ccccCCceecceeeeccc
Confidence 5699999999999998876 89999999999999999999999999999999988 333 789999999999999998
Q ss_pred ccCCCC-------CCCceeEEeEEEeeeccccCCceEEEEEEecC--CCcEEEEcCCce
Q 003108 94 RLSEPS-------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN--TGQWWEFDDEHV 143 (847)
Q Consensus 94 ~~~~~~-------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~--~~~W~~fnD~~V 143 (847)
++.... ....+|+|.|+|+|.|.+..+|||++|||... +.+||.|||-.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 237 FIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred cccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 875542 23789999999999999999999999999753 369999999655
No 39
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.48 E-value=5.6e-14 Score=121.97 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=58.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++++|++++||.+||++|++++|||+++|+|+|+|++| +|+.||++|||.+++||||+..
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L-~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPL-EDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEEe
Confidence 5789999999999999999999999999999999999999 5779999999999999999864
No 40
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.45 E-value=1.2e-13 Score=118.47 Aligned_cols=62 Identities=21% Similarity=0.121 Sum_probs=59.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
++++.++|++++||.+||++|++.+|||+++|+|+|+|+.| +|+.||++|||.+|+||||.+
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L-~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLL-TDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeEC-CCCCCHHHcCCCCCCEEEEEe
Confidence 37899999999999999999999999999999999999999 678999999999999999974
No 41
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.44 E-value=1.7e-13 Score=118.98 Aligned_cols=62 Identities=29% Similarity=0.286 Sum_probs=58.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++++|++++||.+||++|++++|||+++|+|+|+|++| +|+.||++|||.+|++|+|+.+
T Consensus 11 ~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L-~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 11 RECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKAL-ADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEc
Confidence 6789999999999999999999999999999999999999 5779999999999999999854
No 42
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-14 Score=128.84 Aligned_cols=67 Identities=25% Similarity=0.243 Sum_probs=63.6
Q ss_pred cccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 741 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 741 r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
|.+++++.|+|++++||..||++|+.++||||++|+|+|+||+| +|+.||++|||+..||||++...
T Consensus 7 ~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~L-ED~~Tla~Y~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 7 TLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 73 (128)
T ss_pred EeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhccccc-ccCCcccccCccchhhhhhhHHH
Confidence 56779999999999999999999999999999999999999999 79999999999999999998655
No 43
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.7e-14 Score=156.12 Aligned_cols=146 Identities=25% Similarity=0.314 Sum_probs=108.5
Q ss_pred CcceeEEeeCCCC-CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 2 EDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 2 E~F~~LsL~v~~~-~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
|.|+.|..-+... ..+...|..=++++.-. .-+.-|..---.|.+.|.+||.+|.|+.-||.|-...+...|+-
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 6777777777552 23444444333332211 11222333334577889999999999999999999999999999
Q ss_pred ceeeeceeeccccccCCCC----------------------------------------------C---C-CceeEEeEE
Q 003108 81 SPFCFPGELNMQRRLSEPS----------------------------------------------Q---L-DLIYDLSAV 110 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~----------------------------------------------~---~-~~~Y~L~aV 110 (847)
..|.||..||+...+++.. + . ...|+|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 9999999999988764321 0 1 458999999
Q ss_pred EeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCC
Q 003108 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGE 153 (847)
Q Consensus 111 I~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~ 153 (847)
|.|.|.+..+|||.+++|. ..+.|++|||+.|+-+..+.+..
T Consensus 410 ithkgrss~sghy~aw~r~-s~~~w~~fdd~~vs~v~~e~i~~ 451 (473)
T KOG1872|consen 410 ITHKGRSSKSGHYVAWNRV-SEDKWGHFDDDMVSFVLGETILS 451 (473)
T ss_pred eeccccccCCCcceEEEec-cCCceeeccccccccccccceee
Confidence 9999999999999999998 46699999999999998664443
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.42 E-value=3.1e-13 Score=116.40 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=58.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
++++.|+|++++||.+||++|++++|||+++|+|+|+|++|.||..||++|||.+|++|+|.
T Consensus 9 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 9 ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 36789999999999999999999999999999999999999666689999999999999986
No 45
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.40 E-value=4.9e-13 Score=115.64 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=57.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+.+.++|++++||.+||++|++++|+||++|||+|+|+.| +|+.||++|||.+|++|||-
T Consensus 12 k~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L-~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCC-CCCCCHHHcCCCCCCEEEEE
Confidence 7788999999999999999999999999999999999999 57789999999999999985
No 46
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.38 E-value=8.2e-13 Score=113.36 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=58.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
++++.++|++++||.+||.+|++++|+|+++|+|+|+|++| +|+.||++|||.+||||||+.
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L-~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKEL-RNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEe
Confidence 37889999999999999999999999999999999999999 677999999999999999983
No 47
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.35 E-value=1.4e-12 Score=113.24 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=58.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++|+|++++||.+||.+|++.+|||+++|+|+|+|++| +|+.||++|||.+|++|+|...
T Consensus 9 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L-~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 9 RSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPM-EDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEE
Confidence 6889999999999999999999999999999999999999 5779999999999999999854
No 48
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.35 E-value=1.3e-12 Score=113.55 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=57.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCC-CCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIF-PGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~-~~~~l~l~ 805 (847)
+++.|+|++++||.+||.+|++++||||++||| |+|++|.+|++||++|||. +|++|+|-
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 788999999999999999999999999999999 9999997788999999999 88999986
No 49
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.33 E-value=2.3e-12 Score=118.88 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=59.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||++|++++|||+++|+|+|+|+.| +|+.||++|||.+|+||+|+...
T Consensus 38 ~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L-~D~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 38 TCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMEL-EDEYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57799999999999999999654
No 50
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.32 E-value=1.5e-12 Score=111.98 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCccHHHHHHHHHHHh--CCC-CCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 753 ASTSIYQLKMMIWESL--GVV-KENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 753 ~~~tv~~lK~~I~~~~--gi~-p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+++||.+||++|++++ ||+ +++|||+|+||+| +|+.||++|||.+|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL-~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKL-KDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCC-CCCCcHHHcCCCCCCEEEEEe
Confidence 6899999999999995 685 9999999999999 688999999999999999984
No 51
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8.9e-13 Score=126.42 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=59.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++.++|++++||..+|++||+++||||+||||||.|++| +|..||.||||+.++||+|+..
T Consensus 10 ~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qL-edgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 10 GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred ccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhccc-ccCCccccccccccceEEEEEE
Confidence 36899999999999999999999999999999999999999 6779999999999999999964
No 52
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.31 E-value=3.4e-12 Score=111.91 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=57.1
Q ss_pred EEEE-ecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 747 VNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 747 ~~l~-v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.++ |++++||.+||.+|++++|||+++|+|+|+||+| +|+.||++|||.+|++|+|.+..
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L-~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQM-EDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEEC-CCCCCHHHcCCCCCCEEEEEEec
Confidence 5785 8999999999999999999999999999999999 68899999999999999999654
No 53
>PTZ00044 ubiquitin; Provisional
Probab=99.30 E-value=4.1e-12 Score=110.65 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=59.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++++|++++||.+||.+|++..|||+++|+|+|+|++| +|+.||++|||.+|++|||...
T Consensus 11 ~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 11 KKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQM-SDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEc-cCCCcHHHcCCCCCCEEEEEEE
Confidence 6889999999999999999999999999999999999999 5888999999999999999864
No 54
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.29 E-value=5.6e-12 Score=107.59 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++.|+|.+++||.+||.+|++..|+|+++|+|+|+|+.| +|+.||++|||.+|++|+|+..
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L-~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKEL-DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEE-STTSBTGGGTTSTTEEEEEEES
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecc-cCcCcHHHcCCCCCCEEEEEEe
Confidence 6899999999999999999999999999999999999999 7889999999999999999854
No 55
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.29 E-value=5.1e-12 Score=110.31 Aligned_cols=64 Identities=25% Similarity=0.306 Sum_probs=59.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||++|++..|||+++|+|+|+|+.| +|+.||++|||.+|++|+|....
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L-~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFI-KDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEc-CCCCcHHHcCCCCCCEEEEEEec
Confidence 47899999999999999999999999999999999999999 57799999999999999998653
No 56
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.25 E-value=1.2e-11 Score=106.50 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=55.8
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..|+|++++||.+||.+|++++|||+++|+|+|+|+.| +|+.||++|||.+|++|||+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L-~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKIL-KDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEc-CCCCcHHHcCCCCCCEEEEEE
Confidence 37899999999999999999999999999999999999 577899999999999999984
No 57
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.25 E-value=1.5e-11 Score=106.70 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++..|+||..|+|+|+|+.| +|+.||++|||.+|++|||....
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L-~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEc-cCCCCHHHcCCCCCCEEEEEEEc
Confidence 6788999999999999999999999999999999999999 57789999999999999999653
No 58
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.23 E-value=2.3e-11 Score=106.09 Aligned_cols=63 Identities=25% Similarity=0.245 Sum_probs=59.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCC--CCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGV--VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi--~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++.+|| |+++|+|+|+|+.| +|+.||++|||.+||+|++.++.
T Consensus 11 ~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L-~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 11 QTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKIL-KDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEc-cCCCCHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999 99999999999999 57789999999999999998654
No 59
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.22 E-value=1.1e-11 Score=110.83 Aligned_cols=71 Identities=37% Similarity=0.802 Sum_probs=59.8
Q ss_pred CCCeEEEeHHHHHHHhhccC------CCCCCCccccccCC--CCCCCCc--cccccccHHHHHHHHHhcCCCCC-CCchh
Q 003108 302 EEPFYWISSDWLRQWADKIF------PSTLDNTSIQCLHG--KVPESKI--GSMKRISSKAWNKFFFKYNGGPA-LTNDD 370 (847)
Q Consensus 302 ~~~~~~Is~~WL~~w~~~~~------P~pIdN~~llC~Hg--~l~p~k~--~~~krIs~~aw~~L~~~ygGgP~-l~~~~ 370 (847)
++.+|+||.+|+++|.++.. ||||||++|+|.++ .|.+... ..+..||+.+|++|+++|||||. +....
T Consensus 4 g~~~yiIs~~W~~~~~~~~~~~~~~~pGpIdN~~l~~~~~~~~lk~~l~~~~dy~~V~~~vW~~l~~~YGggp~~i~R~~ 83 (86)
T smart00695 4 GDTWYLISTRWYRQWADFVEGKDGKDPGPIDNSGILCSHGGPRLKEHLVEGEDYVLIPEELWNKLVSWYGGGPGPIPRKV 83 (86)
T ss_pred CCEEEEEeHHHHHHHHHHhCCCCCCCCCCCCcHHhcCCCCCcccccccccCCCEEEeCHHHHHHHHHHHCCCCccceEEe
Confidence 57789999999999999877 99999999999998 5655533 35667999999999999999995 66655
Q ss_pred hh
Q 003108 371 YC 372 (847)
Q Consensus 371 ~C 372 (847)
+|
T Consensus 84 i~ 85 (86)
T smart00695 84 VC 85 (86)
T ss_pred ec
Confidence 55
No 60
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.21 E-value=2.3e-11 Score=106.75 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=57.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+ ||++|||.+|++|+|+.+.
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeec
Confidence 56889999999999999999999999999999999999994 66 9999999999999999554
No 61
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.21 E-value=2.8e-11 Score=103.92 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=58.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+++.++|++++||.+||.+|++..||||..|+|+|+|+.| +|+.||++|||.+|++|+|+.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 11 QTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVL-KDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEEC-CCcCcHHHCCCCCCCEEEEEe
Confidence 6789999999999999999999999999999999999999 577899999999999999984
No 62
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.21 E-value=2.5e-11 Score=105.35 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.| +|+.||++|||.+|++|+|....
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L-~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 6788999999999999999999999999999999999999 57789999999999999998653
No 63
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.20 E-value=2.8e-11 Score=103.79 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=58.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
++...++|++++||.+||.+|++.+||||+.|+|+|+|+.| +|++||++|||.+|++|+|..
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l-~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKER-DDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCccc-CccCcHHHcCCCCCCEEEEec
Confidence 46788999999999999999999999999999999999999 577999999999999999974
No 64
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.20 E-value=2.4e-11 Score=107.14 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=58.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceE--EeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL--HKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L--~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++|||+++|+| +|+|+.| +|+.||++|||.+|++|+|++.-
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L-~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVL-QDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCC-CCCCCHHHcCCCCCCEEEEEEEc
Confidence 678899999999999999999999999999999 8999999 57789999999999999999653
No 65
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.11 E-value=1.1e-10 Score=101.86 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC--CCCCCceEEeCCeecccccchHhhcC--CCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHKGQRIIDQECATLADLN--IFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g--i~p~~Q~L~~~G~~L~~d~~tL~~~~--i~~~~~l~l~~ 806 (847)
..+.++|.+++||.+||++|.+..+ .+|++|||||.||.| .|+.||++++ |..|.|||||-
T Consensus 14 ~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiL-kD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 14 EDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLL-PDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred EEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeec-cchhhHHHHhhcccCCceEEEEe
Confidence 3577788999999999999999985 457999999999999 5889999996 99999999983
No 66
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.08 E-value=1.9e-10 Score=99.82 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=56.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEe---CCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK---GQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~---~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
++..|+|++++||.+||++|++..||||++|+|+| .|+.| .|+.||++|||.+|+.|.|.
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l-~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPA-EDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcC-CCCcCHHHcCCCCCCEEEEE
Confidence 67889999999999999999999999999999995 89999 57899999999999999987
No 67
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.03 E-value=6.5e-10 Score=99.66 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=59.3
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++.+.++|.+++||..||.++.++.|||+++|+|+|+|++| +++.|+++|||.+||+|++...
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L-~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRI-RDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeEC-CCCCCHHHcCCCCCCEEEEEEe
Confidence 37889999999999999999999999999999999999999 5778999999999999999854
No 68
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.00 E-value=2e-10 Score=124.09 Aligned_cols=130 Identities=25% Similarity=0.334 Sum_probs=101.0
Q ss_pred cceeEEeeCCCC--------------CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeE
Q 003108 3 DFYELELNVKGL--------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCV 68 (847)
Q Consensus 3 ~F~~LsL~v~~~--------------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~ 68 (847)
+|+.|+|+++.. ..|.+.|.+|-..-.-+ |. ....+ ++..+.++|++||||++||.
T Consensus 277 ~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~ 346 (442)
T KOG2026|consen 277 PFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFK 346 (442)
T ss_pred eeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeecc
Confidence 799999998652 46777777775433222 11 12233 88999999999999999998
Q ss_pred EecCCCceeccCceeeec-eeeccccccCC---CCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCcee
Q 003108 69 FLPKTTMKKKITSPFCFP-GELNMQRRLSE---PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 144 (847)
Q Consensus 69 ~d~~~~~~~Ki~~~V~fP-~~Ldl~~~~~~---~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt 144 (847)
- ++....|+.+-++|| ..+|+.+.... .......|.|.|.++|. ..-|||..++++..++.||+++|-.|+
T Consensus 347 k--Nn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~ 421 (442)
T KOG2026|consen 347 K--NNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVT 421 (442)
T ss_pred c--cCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchh
Confidence 4 457889999999999 45777765432 22225899999999998 377999999999999999999999999
Q ss_pred ecC
Q 003108 145 NLG 147 (847)
Q Consensus 145 ~v~ 147 (847)
+..
T Consensus 422 e~~ 424 (442)
T KOG2026|consen 422 ERL 424 (442)
T ss_pred hhh
Confidence 875
No 69
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.98 E-value=3.9e-10 Score=103.59 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=54.0
Q ss_pred EEEecCCccHHHHHHHHH-----HHhCCC--CCCceEEeCCeecccccchHhhcC------CCCCCEEEEEecc
Q 003108 748 NLKVSASTSIYQLKMMIW-----ESLGVV--KENQILHKGQRIIDQECATLADLN------IFPGDKLWVQDSE 808 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~-----~~~gi~--p~~Q~L~~~G~~L~~d~~tL~~~~------i~~~~~l~l~~~~ 808 (847)
.+.+++++||.+||++|+ +++|+| +++|+|||+||.| +|+.||++|+ +..+.|+||++..
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiL-eD~~TL~d~~~p~g~~~~~~~TmHvvlr~ 91 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKIL-ENSKTVGECRSPVGDIAGGVITMHVVVQP 91 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeec-CCCCcHHHhCCcccccCCCceEEEEEecC
Confidence 346789999999999999 666777 9999999999999 5889999999 8888999999887
No 70
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.95 E-value=1.1e-09 Score=91.34 Aligned_cols=55 Identities=33% Similarity=0.399 Sum_probs=51.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGD 800 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~ 800 (847)
+...++|++++||.+||.+|++.+|+|+..|+|+|+|+.|. |++||++|||.+|+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 47789999999999999999999999999999999999994 67999999999986
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.86 E-value=6.4e-09 Score=87.99 Aligned_cols=62 Identities=29% Similarity=0.313 Sum_probs=58.4
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
++.+.+.+.+++||.+||.+|++..|+|+..|+|+|+|+.| +|+.||++|||.+|++|++.+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l-~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKIL-KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCC-CCcCCHHHCCCCCCCEEEEEE
Confidence 47788999999999999999999999999999999999999 688899999999999999974
No 72
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=98.84 E-value=6.9e-09 Score=94.99 Aligned_cols=92 Identities=24% Similarity=0.432 Sum_probs=52.6
Q ss_pred CCeeEEEchhhHHHHHHhcCCCCCCCC-----CCCCccccccccccccccccccccCCCccccccccccccCCCCCceee
Q 003108 538 DCKYYLLPSTWLTKWRNYISPSGKNAS-----SIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTI 612 (847)
Q Consensus 538 ~~~~y~Vp~~wl~~Wr~fv~~p~k~~~-----~~~P~~ldn~~~~llC~~H~~Ll~~~~~~~~~~g~~~q~~~~~~~~~~ 612 (847)
|..+|+||+.|+++|++||........ ..+|++||| ..|++ .++.....+. .....+.........+.+
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN--~~L~~-~~~~~~~~~~---~~~~~Lk~~l~~~~Dy~~ 74 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDN--SDLLD-EDNSQLQFPP---PENYRLKPNLQEGVDYEL 74 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-G--GGGEC-CTTT------------TEE-SS--CTTTEEE
T ss_pred CCEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeC--HHHhC-CCCcccccch---hhhhhccccccCCCCEEE
Confidence 457999999999999999986655421 123999998 88888 5654332221 111222222334445999
Q ss_pred eCHhHHHHHHHHhCCCcccceEE
Q 003108 613 VTENDWKWFCEEWGGIKEKGLSV 635 (847)
Q Consensus 613 I~~~~W~~l~~~y~~~~~~~i~~ 635 (847)
|+++.|++|.+.||++++|...+
T Consensus 75 v~~~~W~~l~~~Ygggp~I~R~v 97 (99)
T PF06337_consen 75 VPEEVWDYLHSWYGGGPEIKRQV 97 (99)
T ss_dssp EEHHHHHHHHHHH-T----EEEE
T ss_pred ECHHHHHHHHHHcCCCCcEEEEe
Confidence 99999999999999999876543
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.83 E-value=6.6e-09 Score=92.52 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=57.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceE-EeCCe-----ecccccchHhhcCCCCCCEEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQIL-HKGQR-----IIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L-~~~G~-----~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.....+++++||.+||++|+..+|+||..|+| +|.|+ .|.+|.++|+.||+.+|++|||+++.
T Consensus 14 ~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~ 82 (84)
T cd01789 14 SFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82 (84)
T ss_pred eeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence 34567899999999999999999999999999 58998 68899999999999999999999654
No 74
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=98.79 E-value=1.9e-08 Score=89.79 Aligned_cols=79 Identities=15% Similarity=0.405 Sum_probs=60.1
Q ss_pred CCCeeEEEchhhHHHHHHhcCCCCCCCCCCCCccccccccccccccccccccCCCccccccccccccCCCCCceeeeCHh
Q 003108 537 LDCKYYLLPSTWLTKWRNYISPSGKNASSIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTIVTEN 616 (847)
Q Consensus 537 ~~~~~y~Vp~~wl~~Wr~fv~~p~k~~~~~~P~~ldn~~~~llC~~H~~Ll~~~~~~~~~~g~~~q~~~~~~~~~~I~~~ 616 (847)
+|..+|+||+.|+++|..|+..... +.|++||| ..|+| .|++.-..+.. .....+.+|+++
T Consensus 3 ~g~~~yiIs~~W~~~~~~~~~~~~~----~~pGpIdN--~~l~~-~~~~~~lk~~l------------~~~~dy~~V~~~ 63 (86)
T smart00695 3 EGDTWYLISTRWYRQWADFVEGKDG----KDPGPIDN--SGILC-SHGGPRLKEHL------------VEGEDYVLIPEE 63 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHhCCCCC----CCCCCCCc--HHhcC-CCCCccccccc------------ccCCCEEEeCHH
Confidence 5778999999999999999984333 58999998 88999 67632112211 123358999999
Q ss_pred HHHHHHHHhCCCcccceEE
Q 003108 617 DWKWFCEEWGGIKEKGLSV 635 (847)
Q Consensus 617 ~W~~l~~~y~~~~~~~i~~ 635 (847)
.|++|...||++++ .|.+
T Consensus 64 vW~~l~~~YGggp~-~i~R 81 (86)
T smart00695 64 LWNKLVSWYGGGPG-PIPR 81 (86)
T ss_pred HHHHHHHHHCCCCc-cceE
Confidence 99999999999997 4443
No 75
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.71 E-value=2.5e-08 Score=111.90 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=64.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEeccccccCc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRD 814 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~~~~~~~ 814 (847)
+....|.|..+.||++||+.|...+++++++|+|||.||.|- |+.||..|||.+|-|||||+.-.+...+
T Consensus 24 ~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~~~~~~ 93 (493)
T KOG0010|consen 24 KDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQPRPTG 93 (493)
T ss_pred CcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccCCCCCC
Confidence 356688999999999999999999999999999999999995 7789999999999999999988777776
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.67 E-value=4.6e-08 Score=89.54 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=67.5
Q ss_pred cccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCC-------CCCCEEEEEec---ccc
Q 003108 741 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNI-------FPGDKLWVQDS---EIH 810 (847)
Q Consensus 741 r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i-------~~~~~l~l~~~---~~~ 810 (847)
|+-|-++=+++.+++||.+||.+|+....+||++|||+..+..| +|++||+++|+ +.-.+|.|... +..
T Consensus 8 rR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvL-eD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 8 RRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLL-DDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred EecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceee-cccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 44556899999999999999999999999999999999666656 89999999999 77888887766 778
Q ss_pred ccCcccch
Q 003108 811 EHRDIADE 818 (847)
Q Consensus 811 ~~~~i~d~ 818 (847)
|+.+|+.+
T Consensus 87 E~l~I~p~ 94 (119)
T cd01788 87 EPLRIEPF 94 (119)
T ss_pred cceeeeeC
Confidence 88888888
No 77
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=98.66 E-value=2.8e-08 Score=90.98 Aligned_cols=67 Identities=25% Similarity=0.458 Sum_probs=45.2
Q ss_pred eeEeehHHHHHHHHhccC---C---------CCCCCCCCCCceeecCCC-----------CccCCccCCCceeeecHHHH
Q 003108 412 TYYVSKSWLQQWTRRKNL---D---------APSEADGGPTTSIRCPHG-----------QLMPEKAGGAKRLLVPEILW 468 (847)
Q Consensus 412 ~y~ISk~WLr~W~~~~~~---~---------~P~~iDn~~n~dilC~Hg-----------~L~~~~~~~~~~~~V~~~~W 468 (847)
-|.||+.|+++|..+... . .||||||+. |++.++ .|.+....+.++.+||+++|
T Consensus 4 ~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~---L~~~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v~~~~W 80 (99)
T PF06337_consen 4 WYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSD---LLDEDNSQLQFPPPENYRLKPNLQEGVDYELVPEEVW 80 (99)
T ss_dssp EEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGG---GECCTTT---------TEE-SS--CTTTEEEEEHHHH
T ss_pred EEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHH---HhCCCCcccccchhhhhhccccccCCCCEEEECHHHH
Confidence 389999999999766432 1 289998855 888886 45554445789999999999
Q ss_pred HHHHHhhhccCCCC
Q 003108 469 LFIYEDAMKVKPDD 482 (847)
Q Consensus 469 ~~L~~~~~~~gP~~ 482 (847)
++|.+.| ||||++
T Consensus 81 ~~l~~~Y-gggp~I 93 (99)
T PF06337_consen 81 DYLHSWY-GGGPEI 93 (99)
T ss_dssp HHHHHHH--T----
T ss_pred HHHHHHc-CCCCcE
Confidence 9999999 999987
No 78
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=3.8e-08 Score=110.42 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC---CCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG---VVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g---i~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++..| ||+++|+|+|+||.| +|+.||++|||.+|++|.|.++.
T Consensus 11 ~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL-~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 11 QKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKIL-SDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEEC-CCCCcHHHcCCCCCCEEEEEecc
Confidence 6789999999999999999999999 999999999999999 57789999999999999999876
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.42 E-value=3.6e-07 Score=81.87 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=53.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeC----C---eecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG----Q---RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~----G---~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
......+..++||.+||.+|+..+||||..|+|.+- | ..|.+|.++|+.||+.+|++||+.++.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCC
Confidence 356778999999999999999999999999999765 2 446789999999999999999999764
No 80
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.42 E-value=4.9e-07 Score=77.81 Aligned_cols=61 Identities=25% Similarity=0.207 Sum_probs=55.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCC-CCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVK-ENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p-~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+.+.+.|.+++|+..|+..+.++.|+|+ .+.+|+|+|+.| +++.|++++||.+||+|+|.+
T Consensus 11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L-~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRL-DPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEc-CCCCCHHHCCCCCCCEEEEEC
Confidence 5889999999999999999999999999 999999999999 577899999999999999873
No 81
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.39 E-value=9.8e-07 Score=74.52 Aligned_cols=64 Identities=31% Similarity=0.337 Sum_probs=59.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+++.+.|.++.+|..+|.+|....|||+.+|+|.++|+.|. |+.||++|+|..+++++|....
T Consensus 9 gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 9 GKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEec
Confidence 478889999999999999999999999999999999999994 6699999999999999998654
No 82
>PLN02560 enoyl-CoA reductase
Probab=98.07 E-value=6.5e-06 Score=90.48 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred EEEEecCCccHHHHHHHHHHHhCC-CCCCceEEeC---C----eecccccchHhhcCCCCCCEEEEEecc
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGV-VKENQILHKG---Q----RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi-~p~~Q~L~~~---G----~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+|+|++++||.+||.+|+++.|+ +|++|||++. | +.| +|++||.++||.+|++|+++|-+
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L-~d~ktL~d~gv~~gstLy~kDLG 84 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVL-DDSKSLKDYGLGDGGTVVFKDLG 84 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCcccc-CCCCCHHhcCCCCCceEEEEeCC
Confidence 378999999999999999999997 8999999973 4 377 57789999999999999999776
No 83
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.03 E-value=7e-06 Score=71.88 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=48.2
Q ss_pred cCCccHHHHHHHHHHHhC-CCCCCceE--EeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 752 SASTSIYQLKMMIWESLG-VVKENQIL--HKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 752 ~~~~tv~~lK~~I~~~~g-i~p~~Q~L--~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+++.||.+||.+|.+..+ +++..||| .+.|+.| .|+.||.++||..|++|++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L-~d~~tL~~~gv~~g~~lyvKD 76 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSL-KDDDTLVDLGVGAGATLYVRD 76 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCccc-CCcccHhhcCCCCCCEEEEee
Confidence 688999999999999986 57999999 4889999 466799999999999999984
No 84
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.91 E-value=1.1e-05 Score=71.15 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=40.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC---eec-ccccchHhhcCCCCCCEEEEE
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---RII-DQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G---~~L-~~d~~tL~~~~i~~~~~l~l~ 805 (847)
-+...|+|++++|+.+||.+|.+.+++|+..|.|+.+- ..| .++++||+++||.-||.|+|.
T Consensus 13 dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 13 DGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp SEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 37788899999999999999999999999999996442 344 467899999999999999986
No 85
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.88 E-value=2.1e-05 Score=73.64 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=48.7
Q ss_pred eEEEEecCCccHHHHHHHHHHHh-------CCCCCCceEEeCCeecccccchHhhcCCCCCC------EEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESL-------GVVKENQILHKGQRIIDQECATLADLNIFPGD------KLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~-------gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~------~l~l~~~~ 808 (847)
...+.+++++||++||+.|+..- -..+.+.|||+.||.| +|.+||+++++..|+ ++||++..
T Consensus 15 ~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL-~d~~tL~~~~~~~~~~~~~~~vmHlvvrp 89 (111)
T PF13881_consen 15 IGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRIL-EDNKTLSDCRLPSGETPGGPTVMHLVVRP 89 (111)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--EEEEEEE-S
T ss_pred ccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeec-CCcCcHHHhCCCCCCCCCCCEEEEEEecC
Confidence 57889999999999999999642 2345678999999999 689999999999988 68999876
No 86
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.84 E-value=2.1e-05 Score=84.72 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC--CCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g--i~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..+.++|.+++||..||.+|+...| .|+++|.|||+||.| .|+.||.+|+|..++-|-|.++-
T Consensus 11 ~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL-~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 11 QTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKIL-KDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred ceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceec-cCCcchhhhccccCceEEEEEec
Confidence 6789999999999999999999999 999999999999999 68899999999999999888766
No 87
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.79 E-value=8.2e-05 Score=59.58 Aligned_cols=62 Identities=29% Similarity=0.369 Sum_probs=56.4
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+....+.+.+.+|+.+||.+|.+++|+++..|.|+++|..+ .+..++.++++..|++|++..
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKIL-PDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEe
Confidence 46778889999999999999999999999999999999999 566788899999999999873
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.6e-05 Score=94.16 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++.++.|...+||+++|.+|.++-.|+-+.|||||+||.| .|++++++||| .|-+|||+.+
T Consensus 13 r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl-~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 13 RTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVL-QDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeEEEechHHHHHHHHHHHHHhcccccccceeeecceee-ccchhhhhccC-CCeEEEeecc
Confidence 6778999999999999999999999999999999999999 58899999999 9999999944
No 89
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.64 E-value=7.7e-05 Score=88.82 Aligned_cols=114 Identities=22% Similarity=0.363 Sum_probs=89.1
Q ss_pred cccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCcee--ccCceeeeceeeccccccCC----------------
Q 003108 36 YFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKK--KITSPFCFPGELNMQRRLSE---------------- 97 (847)
Q Consensus 36 y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~--Ki~~~V~fP~~Ldl~~~~~~---------------- 97 (847)
-.|+.|.+......+..+..||.+|.|...-+....-+.... |.-..|-+|..+.|..--..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~ 781 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLP 781 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCc
Confidence 579999999999999999999999999998887654444333 44667788887766643110
Q ss_pred --CCCCCceeEEeEEEeeeccccCCceEEEEEEe--------cCCCcEEEEcCCceeecCCC
Q 003108 98 --PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKD--------ENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 98 --~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~--------~~~~~W~~fnD~~Vt~v~~~ 149 (847)
....-.+|+|.|+|+|.|..-+.+|.+++||- +.+.+||.|||-.|.+++.+
T Consensus 782 ~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~ 843 (1118)
T KOG1275|consen 782 DYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEE 843 (1118)
T ss_pred cccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChH
Confidence 01114899999999999998789999999985 23369999999999999865
No 90
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.62 E-value=9e-05 Score=65.78 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=65.6
Q ss_pred cccccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEe-CCeecccccchHhhc-------CCCCCCEEEEEecccc
Q 003108 739 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK-GQRIIDQECATLADL-------NIFPGDKLWVQDSEIH 810 (847)
Q Consensus 739 R~r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~-~G~~L~~d~~tL~~~-------~i~~~~~l~l~~~~~~ 810 (847)
|.|+-|.++-++..++.||.+||.++....--|++.|||+. .--||.+|++||+++ ..+.-.++.|+.+.-.
T Consensus 6 ~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgLr~~~~~ 85 (110)
T KOG4495|consen 6 RVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGLRALDAF 85 (110)
T ss_pred eeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeeeecccch
Confidence 34556678999999999999999999999999999999988 444777999999999 5667779999877555
Q ss_pred ccCcccch
Q 003108 811 EHRDIADE 818 (847)
Q Consensus 811 ~~~~i~d~ 818 (847)
|+--|.|.
T Consensus 86 e~l~iedv 93 (110)
T KOG4495|consen 86 EALCIEDV 93 (110)
T ss_pred hccccccc
Confidence 55555554
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.36 E-value=0.00053 Score=58.44 Aligned_cols=63 Identities=24% Similarity=0.174 Sum_probs=56.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeC---C-eecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG---Q-RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~---G-~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
-...+.|.|..+|..||++|+...|++- +|||.|. | +||..+..||++|||+-.-.|.|..+.
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 5778999999999999999999999988 9999983 3 788788999999999999999998665
No 92
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00059 Score=72.73 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=54.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
..++|+|..+++|.+||+.+....|||+++-++||.||.|. |+.|++.+.+...+.+|+.
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 57899999999999999999999999999999999999995 6679998888888887776
No 93
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=95.55 E-value=0.011 Score=62.23 Aligned_cols=70 Identities=24% Similarity=0.503 Sum_probs=47.0
Q ss_pred EEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEE
Q 003108 49 RSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIK 128 (847)
Q Consensus 49 k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk 128 (847)
|++.+.++|+|+++|+- - | .|.. |+..|.-.-. ...|++.+||-..- +--|++++++
T Consensus 183 rkMvlekv~~vfmLHFV---e----G----------LP~n-dl~~ysF~fe--g~~Y~Vt~VIQY~~---~~~HFvtWi~ 239 (275)
T PF15499_consen 183 RKMVLEKVPPVFMLHFV---E----G----------LPHN-DLQHYSFHFE--GCLYQVTSVIQYQA---NLNHFVTWIR 239 (275)
T ss_pred HhhhhhcCchhhhhhhh---c----c----------CCcc-CCCccceeec--CeeEEEEEEEEEec---cCceeEEEEE
Confidence 66777788888877742 1 1 1211 2222211111 56899999998874 4579999999
Q ss_pred ecCCCcEEEEcCCc
Q 003108 129 DENTGQWWEFDDEH 142 (847)
Q Consensus 129 ~~~~~~W~~fnD~~ 142 (847)
+ .+|.|.++||-+
T Consensus 240 ~-~dGsWLecDDLk 252 (275)
T PF15499_consen 240 D-SDGSWLECDDLK 252 (275)
T ss_pred c-CCCCeEeeccCC
Confidence 9 578899999976
No 94
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.43 E-value=0.041 Score=46.66 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=43.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 804 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l 804 (847)
+...+.|++++|+.+|=++.-.++|+.+++=.|.+++|.| |-+.++.-.|+-.|+.|.|
T Consensus 7 rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~l-dlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 7 RRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPL-DLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEE-SSS-BHHHH---SS-EEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEe-ccccceeecCCCCCCEEeC
Confidence 4568899999999999999999999999988999999999 7889999999999999875
No 95
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.06 E-value=0.03 Score=49.25 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=44.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCc------eEE-eCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQ------ILH-KGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q------~L~-~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+.+.+.+-.+.+|.+|...|.+.++.+.... .|. -+|..| +++.||+++||.+|++|.|+
T Consensus 13 ~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L-~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 13 RQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPL-DPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp -EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEE-ETTSBCGGGT--TT-EEEE-
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCccc-CCcCcHhHcCCCCCCEEEeC
Confidence 6788999999999999999999999865543 455 678989 68899999999999999884
No 96
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.043 Score=62.42 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=54.7
Q ss_pred ceEEEE-ecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~-v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...++ ++.++|...+|+++....||+|+-|+++.-|+.|.|| --++.++|.||.+|++.=+-
T Consensus 13 k~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd-~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 13 KKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDD-VDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccc-ccccccccCCCCEEEeeccc
Confidence 344455 8999999999999999999999999999999999544 47999999999999998443
No 97
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.11 Score=52.98 Aligned_cols=59 Identities=24% Similarity=0.178 Sum_probs=53.0
Q ss_pred EecCCccHHHHHHHHHHHhCCCCCCceE-EeCC-----eecccccchHhhcCCCCCCEEEEEecc
Q 003108 750 KVSASTSIYQLKMMIWESLGVVKENQIL-HKGQ-----RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 750 ~v~~~~tv~~lK~~I~~~~gi~p~~Q~L-~~~G-----~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.++++||.++|.+++...|.+++...| .|.| -.|+++++.|..|+..+|-.||++++.
T Consensus 18 r~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 5678999999999999999999999988 4555 468899999999999999999999776
No 98
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.93 E-value=0.29 Score=43.07 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=51.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCC-ceEE--eCCeeccccc-chHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKEN-QILH--KGQRIIDQEC-ATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~-Q~L~--~~G~~L~~d~-~tL~~~~i~~~~~l~l~ 805 (847)
+.+.....+++||.+|..-|....+.+... =.|+ |-.+.|.+++ .||+++|+.|+.+|+|.
T Consensus 17 ~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 17 SRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 456778889999999999999998888765 4664 6678886666 89999999999999985
No 99
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.13 Score=52.69 Aligned_cols=71 Identities=18% Similarity=0.093 Sum_probs=59.1
Q ss_pred ccccccc--CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCC--CEEEEEecc
Q 003108 737 SKRSRKT--RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPG--DKLWVQDSE 808 (847)
Q Consensus 737 s~R~r~~--~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~--~~l~l~~~~ 808 (847)
+.|.|-+ +..+.+.+..-+|+.++|.++..++|+.|-.|+.+|+|+.|. |..-|.+++|..| -.|.+.|..
T Consensus 147 ~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 147 ILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred chHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEEEEEecc
Confidence 3344444 478899999999999999999999999999999999999995 6678999999999 455554443
No 100
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=92.89 E-value=0.14 Score=46.90 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=37.3
Q ss_pred eEEEEec--CCccHHHHHHHHHHHhCCCCCC--ceEEeCCeecccccchHhhc
Q 003108 746 FVNLKVS--ASTSIYQLKMMIWESLGVVKEN--QILHKGQRIIDQECATLADL 794 (847)
Q Consensus 746 ~~~l~v~--~~~tv~~lK~~I~~~~gi~p~~--Q~L~~~G~~L~~d~~tL~~~ 794 (847)
.+.|+|. .++||..||.+|.+..+=.+.. +||||+||.|. |+..|...
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~ 64 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSE 64 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhh
Confidence 3677888 8999999999999999544544 47799999994 65566543
No 101
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.38 Score=43.90 Aligned_cols=61 Identities=26% Similarity=0.260 Sum_probs=56.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
.++.+.|.-+++++.|...--++.|++...-|+.|+|+.| .+..|=++++...||+|.++.
T Consensus 31 ~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI-~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 31 SVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRI-RETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred CEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCc-CCCCChhhhCCcCCcEEEEEe
Confidence 5778999999999999999999999999999999999999 566799999999999999984
No 102
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.99 E-value=0.25 Score=51.89 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=48.4
Q ss_pred EEecCCccHHHHHHHH-HHHhCCCCCCceE----EeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 749 LKVSASTSIYQLKMMI-WESLGVVKENQIL----HKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 749 l~v~~~~tv~~lK~~I-~~~~gi~p~~Q~L----~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+.+++.||.||+..| .....+.|.-||+ .-+|+.|- |+.||+++|..+|+||.++|-+
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEEEeccC
Confidence 6889999999999555 4557899966655 45799995 5668999999999999999766
No 103
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=91.49 E-value=0.61 Score=41.00 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=49.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecccc--cchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQE--CATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~~d--~~tL~~~~i~~~~~l~l~ 805 (847)
..+.....+++||.+|.+-|....+.....-.|+ |-.|.|.++ ++||.++|+.|..+|.|.
T Consensus 15 ~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 15 SRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 4466788899999999999977777766666674 667888654 689999999999999886
No 104
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=90.65 E-value=0.72 Score=41.46 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=45.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEe----CCe-ecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK----GQR-IIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~----~G~-~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..++..+|..|||..|+..+.+.|.| +..=||.. ++- .|.+.+.||+++||..|-+|.+-.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence 46777899999999999999999999 77789954 443 465667899999999999998874
No 105
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.12 Score=43.12 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=53.1
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEE
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 804 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l 804 (847)
.++.+.+++-++|||.++|-.|..+.|-.|+--.|-..+-.+ .|.-||++|.|..|.-|.|
T Consensus 10 LGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~-kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 10 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred cCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhh-hcccceeeEEeccCccEEE
Confidence 347788999999999999999999999999998888666666 6888999999999887765
No 106
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.19 E-value=1 Score=39.78 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=43.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCC-CCCceE--EeCCeecccccchHhhcCCCCCCE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVV-KENQIL--HKGQRIIDQECATLADLNIFPGDK 801 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~-p~~Q~L--~~~G~~L~~d~~tL~~~~i~~~~~ 801 (847)
+.+...+..++||.+|..-|....+-+ ...-.| .|-.|.|.++++||+++|+.+..+
T Consensus 15 ~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 15 KRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 455567889999999999999875332 233445 478899988899999999996443
No 107
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.54 E-value=2.4 Score=38.01 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC--eecc-------cccchHhhcCCCCCCEEEEEe
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ--RIID-------QECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G--~~L~-------~d~~tL~~~~i~~~~~l~l~~ 806 (847)
.-....++||.+|..-|+ ..+-.|+.-.|+.+= |.++ +.+.||+++||.+..+|.|.+
T Consensus 18 ~rrF~~~~tl~~l~~fv~-~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~d 84 (85)
T cd01774 18 ERRFLFTQSLRVIHDFLF-SLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQD 84 (85)
T ss_pred EEEeCCCCcHHHHHHHHH-hCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEec
Confidence 345667899999999996 566778888897655 7785 347799999999999999873
No 108
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.65 E-value=2.4 Score=37.29 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=45.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecccc--cchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQE--CATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~~d--~~tL~~~~i~~~~~l~l~ 805 (847)
.+.-...+++||.+|..-|+...+.. ..-.|+ |--|.+.++ +.||+++|+.|..+|.|.
T Consensus 16 ~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 16 TLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 34557788999999999998765543 334554 566888533 689999999999999986
No 109
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=85.98 E-value=1.1 Score=39.18 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=44.1
Q ss_pred ecCCccHHHHHHHHHHHhCC-CCCCceEEeCCeecccccchHhhc-CCCCCCEEEEE
Q 003108 751 VSASTSIYQLKMMIWESLGV-VKENQILHKGQRIIDQECATLADL-NIFPGDKLWVQ 805 (847)
Q Consensus 751 v~~~~tv~~lK~~I~~~~gi-~p~~Q~L~~~G~~L~~d~~tL~~~-~i~~~~~l~l~ 805 (847)
|+++++|.+|+.-|.+.... .--+-.|.++|+.| +|...|+++ ||.+|.+|.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEE
Confidence 68999999999998877543 23344788999999 787888876 58999999999
No 110
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=83.81 E-value=3.7 Score=35.69 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=44.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeeccc--ccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQ--ECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~~--d~~tL~~~~i~~~~~l~l~ 805 (847)
+.+.....+++||.+|..-|....+- +..-.|+ |-.+.|.+ .+.||+++|+. .++|.++
T Consensus 13 ~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 13 KRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 34666788999999999999876543 4445564 56688865 79999999999 5666554
No 111
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.99 E-value=6.7 Score=34.94 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeeccc--ccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIIDQ--ECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~~--d~~tL~~~~i~~~~~l~l~~~ 807 (847)
..+.-....++||..|-.-|.. .|.+++...|+ |-=|.+.. -+.||+++|+.|-.+|.|.++
T Consensus 16 ~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 16 KREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4455567788999999999888 68899988886 34466643 368999999999999999843
No 112
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=1.4 Score=55.54 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeecee-ecccc
Q 003108 15 KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGE-LNMQR 93 (847)
Q Consensus 15 ~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~-Ldl~~ 93 (847)
..+.+++..|+..+.+..++++.|+.|....... ...... .++|+..|+... .....+....+.++.. +.+-.
T Consensus 482 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 482 EILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQGS--IYAIIVVRFRSR--LPRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred eeccchhhhhhccCccccccccCCcceEEeeccc--cccccc--ceEEEEEeeccc--cccccCcccCCCccccCCccee
Confidence 3567888899988887788888888765433221 111111 466666666632 2222334444444432 33333
Q ss_pred ccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003108 94 RLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (847)
Q Consensus 94 ~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~ 147 (847)
++.... ....++|..+++|.++. ..+|+ ..+.|+..++..+....
T Consensus 556 ~~~~~~-~~t~~~l~~~~~~~~s~-~~~~~-------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 556 SVLSGA-QSTEEDLLSVICHRTSR-YSREP-------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred eccCCC-cccccchhhHHhhcccc-cCCcC-------ccccccCCCcccccccc
Confidence 333311 25789999999999995 77877 35677777777766654
No 113
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.15 E-value=11 Score=33.36 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=47.6
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecc--cccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~--~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+.-...+++||.+|-.-|.. .|.++..-+|+ |-=|.+. +-+.||+++|+.|..+|.|.
T Consensus 16 r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 16 FLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 444567789999999999976 48888888885 5557774 34679999999999999986
No 114
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=72.00 E-value=3.7 Score=45.76 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=58.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccc-cchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQE-CATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d-~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...++|+.+..+.+|++.++-..||+.+.--|+|+++.|..+ +.+|.++|+..|++|.+.-..
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 5678899999999999999999999999999999999999777 899999999999999998444
No 115
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=66.64 E-value=10 Score=33.59 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=34.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 781 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G 781 (847)
.+|++.|.+.-+..+|..+|.+++++|++.-.|.|.-
T Consensus 11 ~tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 11 YTVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 4899999999999999999999999999888998764
No 116
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=60.57 E-value=21 Score=32.18 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=53.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.++-++|..++|...|-...-...|=....-|+.|+|+.+ +=++|=++++...++.|.++
T Consensus 35 telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI-~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 35 TELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRI-DLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred CEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceec-CCCCChhhcCCccchHHHHH
Confidence 6889999999999988888888899999999999999999 46689999999999988765
No 117
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=56.42 E-value=11 Score=38.40 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 119 NSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 119 ~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
..||.+.+++. .+.||.|||+.+.+.+..
T Consensus 137 g~~Havfa~~t--s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 137 GQEHAVFACVT--SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp STTEEEEEEEE--TTCEEEEETTEEEE----
T ss_pred CCcceEEEEEe--eCcEEEecCCeeeeCCCC
Confidence 46899999884 789999999999998753
No 118
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=55.96 E-value=35 Score=34.29 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=42.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCc-eEEe-CCeec-ccccchHhhcCCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQ-ILHK-GQRII-DQECATLADLNIFPGD 800 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q-~L~~-~G~~L-~~d~~tL~~~~i~~~~ 800 (847)
.++.+.+.++.||.+|+..|.+..++++..| .|.+ .|++| ..++..+..+.-...+
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 5788999999999999999999999999985 5655 35666 3455556666554443
No 119
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=19 Score=43.06 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCeEEEeHHHHHHHhhcc-----CCCCCCCccccc-cCCCCCCCCccccc--cccHHHHHHHHHhcCC-CCCCC
Q 003108 303 EPFYWISSDWLRQWADKI-----FPSTLDNTSIQC-LHGKVPESKIGSMK--RISSKAWNKFFFKYNG-GPALT 367 (847)
Q Consensus 303 ~~~~~Is~~WL~~w~~~~-----~P~pIdN~~llC-~Hg~l~p~k~~~~k--rIs~~aw~~L~~~ygG-gP~l~ 367 (847)
+..+.|+..|.+.+-+.. .||||+...++- .-+.+.++....+. -|+..+|+.|..+||= |+..+
T Consensus 45 ~~a~i~~y~wyeg~fd~~~~dg~~pgPi~q~~i~d~e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~p 118 (823)
T COG5560 45 EYAVIFAYAWYEGMFDRASCDGGSPGPIVQGPIVDFEPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITP 118 (823)
T ss_pred ceEEEEehHHhhhhcccccccCCCCCCCCcccccccChhhcchhhhcCCCeeeechHHHHHHHHHhccccccee
Confidence 456789999999998764 689999998765 56666665444333 3899999999999997 65544
No 120
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=50.71 E-value=40 Score=28.97 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=41.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCC----CCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGV----VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi----~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+..+++....||.+|..++.+..+- ....-.+..||+... .+.-|.+||.|.+.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~ 74 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAII 74 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEe
Confidence 45777888889999999999988643 233446778998884 34568999999876
No 121
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=49.22 E-value=49 Score=27.51 Aligned_cols=49 Identities=10% Similarity=0.255 Sum_probs=38.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+...+++....|+.+||.++ -|+.=.++++|-+..+| +-+.+||.|.+-
T Consensus 6 N~k~~~~~~~~tl~~lr~~~------k~~~DI~I~NGF~~~~d------~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKES------KPDADIVILNGFPTKED------IELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhh------CCCCCEEEEcCcccCCc------cccCCCCEEEEE
Confidence 56678999999999999984 34555889999988533 446889988875
No 122
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=45.12 E-value=18 Score=30.62 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=28.8
Q ss_pred CccccCCCCCeeeeEEEEEEe--ecCCeEEEEeeeeEE
Q 003108 34 NQYFCDSCGTRVDATRSIKLR--SLPDVLNFQLKRCVF 69 (847)
Q Consensus 34 n~y~Ce~C~~~~~a~k~~~i~--~lP~vLii~LkRF~~ 69 (847)
|++.|.+|+...-..|.+... .|..++=||+++|..
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 567899999876666666654 688999999999974
No 123
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=45.09 E-value=55 Score=38.48 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=57.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCC----CCCc--eE-EeCCeecccccchHhhcCCCCCCEEEEEeccccccCcccc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVV----KENQ--IL-HKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIAD 817 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~----p~~Q--~L-~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~~~~~~~i~d 817 (847)
+.+.+-+-.+..|.+|=-.|.+..|=. .... .| --+|..| +.++||++.||.+|++|+|+-.+..++.++.|
T Consensus 12 ~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL-~~~~sL~~~gV~DG~~L~L~p~~~~~p~~v~d 90 (452)
T TIGR02958 12 RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPL-DPDASLAEAGVRDGELLVLVPASATEPAPVVE 90 (452)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCC-CCCCCHHHcCCCCCCeEEEeeCCCCCCCCccc
Confidence 346777888899999988888877642 2222 33 3578899 67899999999999999999766556666666
Q ss_pred hhhccc
Q 003108 818 ELSDQK 823 (847)
Q Consensus 818 ~~~~~~ 823 (847)
+..|..
T Consensus 91 Dv~dav 96 (452)
T TIGR02958 91 DVSDAV 96 (452)
T ss_pred cHHHHH
Confidence 655544
No 124
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=44.28 E-value=32 Score=41.06 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=41.3
Q ss_pred EEEEecCCccHHHHHHHHHHHh--CCCCCCc------eE--EeC--Ce-eccccc------------chHhhcCCCCCCE
Q 003108 747 VNLKVSASTSIYQLKMMIWESL--GVVKENQ------IL--HKG--QR-IIDQEC------------ATLADLNIFPGDK 801 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~--gi~p~~Q------~L--~~~--G~-~L~~d~------------~tL~~~~i~~~~~ 801 (847)
+.++|=.-|||.|+|++|.+.. ++|-.++ .| ..+ |+ .|.|++ -||++|||.+|++
T Consensus 204 i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~ 283 (539)
T PF08337_consen 204 IPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGAT 283 (539)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEE
T ss_pred EEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCce
Confidence 7889999999999999999985 4443321 22 112 23 444332 3899999999999
Q ss_pred EEEEecc
Q 003108 802 LWVQDSE 808 (847)
Q Consensus 802 l~l~~~~ 808 (847)
|.|+-..
T Consensus 284 vaLv~k~ 290 (539)
T PF08337_consen 284 VALVPKQ 290 (539)
T ss_dssp EEEEES-
T ss_pred EEEeecc
Confidence 9999654
No 125
>COG5417 Uncharacterized small protein [Function unknown]
Probab=43.65 E-value=58 Score=28.48 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=46.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCC----Cc-eEEeCCeecccccchHhhcCCCCCCEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKE----NQ-ILHKGQRIIDQECATLADLNIFPGDKLWV 804 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~----~Q-~L~~~G~~L~~d~~tL~~~~i~~~~~l~l 804 (847)
++..|.++.-.+|+.|=.-++|.+.|.-. .| +..-.++.|. ++..|.++||..||.|.+
T Consensus 17 ~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 17 GTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred ceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 67888999999999999999998876543 23 4555667775 556899999999998864
No 126
>PRK06437 hypothetical protein; Provisional
Probab=42.24 E-value=82 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=39.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+...+++....||.+|= +.+|+++..--+..||+.+. .+.-|.+||.|.+.
T Consensus 11 ~~~~~~i~~~~tv~dLL----~~Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv 61 (67)
T PRK06437 11 INKTIEIDHELTVNDII----KDLGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLIL 61 (67)
T ss_pred cceEEEcCCCCcHHHHH----HHcCCCCccEEEEECCEECC------CceEcCCCCEEEEE
Confidence 45577888889998655 44899987778889999884 45567899999886
No 127
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=41.21 E-value=86 Score=26.16 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.9
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
..+++....||.+|..+ +++++..-.+..||+.+..+ .-.+.-|.+||.|.+.
T Consensus 7 ~~~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~--~~~~~~L~~gD~V~ii 59 (65)
T cd00565 7 EPREVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRS--EWASTPLQDGDRIEIV 59 (65)
T ss_pred eEEEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHH--HcCceecCCCCEEEEE
Confidence 45678888999988777 68888777888999887322 2334568999999876
No 128
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=40.61 E-value=31 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCC
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVK 772 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p 772 (847)
|.|+|+.+.||.+||..+|+...--|
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGST
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCC
Confidence 68999999999999999999865444
No 129
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=40.00 E-value=12 Score=45.93 Aligned_cols=87 Identities=17% Similarity=0.327 Sum_probs=58.0
Q ss_pred EEEeecCCeEEEEeeeeEEecCCCceecc--CceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEE
Q 003108 51 IKLRSLPDVLNFQLKRCVFLPKTTMKKKI--TSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIK 128 (847)
Q Consensus 51 ~~i~~lP~vLii~LkRF~~d~~~~~~~Ki--~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk 128 (847)
..|.+.|+|.+|.|. + ++....|. .+...+-.++|++...........+|+|++++.-... +++|.|++.
T Consensus 676 h~is~~P~vftIvle---w--Ek~ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Ay 747 (806)
T KOG1887|consen 676 HILSPCPPVFTIVLE---W--EKSETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAY 747 (806)
T ss_pred hhcCCCCCeeEeeee---h--hcccchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeec
Confidence 457789999999554 2 12222332 2223344567877655444444789999999865533 689999999
Q ss_pred ecCCCcEE--EEcCCceeecC
Q 003108 129 DENTGQWW--EFDDEHVSNLG 147 (847)
Q Consensus 129 ~~~~~~W~--~fnD~~Vt~v~ 147 (847)
. .+.|. ..+|..+..++
T Consensus 748 e--~Nrwvs~r~~~~~~e~iG 766 (806)
T KOG1887|consen 748 E--PNRWVSLRHEDSQGEVVG 766 (806)
T ss_pred c--CCcchhhHHHHHHhhhcc
Confidence 6 56776 88998877774
No 130
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=36.41 E-value=69 Score=29.46 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred cccccccccccC-ceEEEEecCCccHHHHHHHHHHHhCCCCCCceE
Q 003108 733 DRRASKRSRKTR-SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL 777 (847)
Q Consensus 733 ~~r~s~R~r~~~-~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L 777 (847)
++|+|+-....+ ..-.|-|++++|..++-..+-++|.|.-.-|..
T Consensus 4 ~~~~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kF 49 (96)
T cd01778 4 SLRTSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKF 49 (96)
T ss_pred ceeEEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcce
Confidence 466666666666 566889999999999999999999997776644
No 131
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=35.33 E-value=88 Score=30.01 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=44.0
Q ss_pred cccccccCceEEEEecC-CccHHHHHHHHHHH----hCCCCCCce------------------EE--e--CCe-ec--cc
Q 003108 737 SKRSRKTRSFVNLKVSA-STSIYQLKMMIWES----LGVVKENQI------------------LH--K--GQR-II--DQ 786 (847)
Q Consensus 737 s~R~r~~~~~~~l~v~~-~~tv~~lK~~I~~~----~gi~p~~Q~------------------L~--~--~G~-~L--~~ 786 (847)
|=-+|-.|.-+-=.|+- ++||.+|++++.+. -|++|..-. |+ + ..+ .| .+
T Consensus 8 SFeyRn~K~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~ 87 (122)
T PF10209_consen 8 SFEYRNVKNLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSD 87 (122)
T ss_pred cccCCceeeeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCC
Confidence 33446665444444775 89999998887766 467665432 11 1 111 22 36
Q ss_pred ccchHhhcCCCCCCEEEEE
Q 003108 787 ECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 787 d~~tL~~~~i~~~~~l~l~ 805 (847)
+++||.++||..+.-|-+=
T Consensus 88 ~~~tL~~~gv~nETEiSfF 106 (122)
T PF10209_consen 88 DDKTLKELGVENETEISFF 106 (122)
T ss_pred CCCcHHHcCCCccceeeee
Confidence 7889999999998887765
No 132
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=35.32 E-value=1.2e+02 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=38.9
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+++....||.+|..+ +++++..-.+..||+.+..+ .-.+.-|.+||.|.+.
T Consensus 7 ~~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~--~~~~~~L~~gD~veii 58 (64)
T TIGR01683 7 PVEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS--EWDDTILKEGDRIEIV 58 (64)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH--HcCceecCCCCEEEEE
Confidence 5677788899988776 78998777778899887322 2445668999998876
No 133
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=34.49 E-value=80 Score=28.39 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+...++=..++..||..++.++|+.-..=.++....+| +.+++|-+-||+-+-++.+-+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L-~~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQL-EPHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEecccee-cCCccHHHhhccccCEEEEEE
Confidence 45556677899999999999999999999999999898 688999999999888766543
No 134
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=34.22 E-value=43 Score=36.04 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=43.3
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC------eecccccchHhhcCCCCCCEEEEEecc
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ------RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G------~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+-|..+++|.+|=..|.+..|.|++...++|.- ..| +-..|+..+.|..||.|..+...
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRAP 153 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE--
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEecc
Confidence 5678899999999999999999999999887765 335 67899999999999999999755
No 135
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=33.62 E-value=42 Score=29.67 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.5
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCC
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVK 772 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p 772 (847)
+.|.|+.+.||.+||.++|+...--|
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~P 27 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMP 27 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCC
Confidence 67899999999999999999865544
No 136
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=33.48 E-value=59 Score=36.96 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-CCCCCCceEE--eCCeecccccchHhhcCCCCCCE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL-GVVKENQILH--KGQRIIDQECATLADLNIFPGDK 801 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~-gi~p~~Q~L~--~~G~~L~~d~~tL~~~~i~~~~~ 801 (847)
+.+.+.+--+.||.+|+.-|...- |-+...|.|+ |--|.|+||+.||+++|+.+--.
T Consensus 316 ~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 316 TRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred ceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 455667888899999999999876 4444467775 55699999999999999986543
No 137
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=32.28 E-value=47 Score=40.56 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=35.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQR 782 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~ 782 (847)
..+.+-|++++|+..+++.|....|||...|.|.|.|.
T Consensus 325 ~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 325 TSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 57788899999999999999999999999999999874
No 138
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=32.09 E-value=92 Score=35.46 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=47.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC--CCCCCceEEeC----Ce--ecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG--VVKENQILHKG----QR--IIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g--i~p~~Q~L~~~----G~--~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...++|.+++++.-|-.+|..-+- ..|++-.+.-+ |. .+ ..++|+.++|+..|++|.|.-+.
T Consensus 10 G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~-l~dqt~~dlGL~hGqmLyl~ysd 80 (571)
T COG5100 10 GQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSL-LKDQTPDDLGLRHGQMLYLEYSD 80 (571)
T ss_pred CceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeec-ccccChhhhccccCcEEEEEecc
Confidence 6778899999999999999988764 44555444321 22 12 35689999999999999999654
No 139
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=31.96 E-value=95 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=31.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG 780 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~ 780 (847)
....+.|.++.|..+|+.+|.++++++.....|.|-
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 567888999999999999999999998766777665
No 140
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=31.72 E-value=1.8e+02 Score=25.50 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=35.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCC--CCCceEE--e----CCeecccccchHh
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVV--KENQILH--K----GQRIIDQECATLA 792 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~--p~~Q~L~--~----~G~~L~~d~~tL~ 792 (847)
...+|.|++++|..+|=.++.+++|+. |.+=.|+ . ..+.|.+|+.-|.
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 457899999999999999999999999 3333443 1 2356766666554
No 141
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=30.79 E-value=1e+02 Score=27.59 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=32.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCc-eEE--eCC--eecccc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQ-ILH--KGQ--RIIDQE 787 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q-~L~--~~G--~~L~~d 787 (847)
..+|-|.|.+|+.+|=.++.++|.|.--+. .|+ .+| .||.+|
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 347789999999999999999999975444 553 455 677544
No 142
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=30.41 E-value=84 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=34.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 781 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G 781 (847)
=+++|.|....+..+|..+|-+++..+++.-.|.|.-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4789999999999999999999999999999998854
No 143
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=29.10 E-value=1.8e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred ceEEEEecCC-ccHHHHHHHHHHHhC-CCC--CCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSAS-TSIYQLKMMIWESLG-VVK--ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~-~tv~~lK~~I~~~~g-i~p--~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+..+++... .||.+|+..+.+..+ +-. ..-++..||+... + +.-|.+||.|.+-
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFI 74 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEe
Confidence 4567888876 899999999999874 111 1235667888773 2 4567889988775
No 144
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.08 E-value=1.4e+02 Score=26.53 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=40.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceE-EeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQIL-HKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L-~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+.+.+.+....||++|=+ .+|||...=-+ .-||+.-. + ++-+.+||.|.+.
T Consensus 23 ~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~-----~-~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVD-----F-DYRLKDGDRVAVY 74 (81)
T ss_pred CceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECC-----C-cccCCCCCEEEEE
Confidence 567889999999986654 59999988865 45888773 1 4778999999987
No 145
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=28.59 E-value=1.4e+02 Score=26.18 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=34.7
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCC--CCCceEE----eCC--eecccccchHhhc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVV--KENQILH----KGQ--RIIDQECATLADL 794 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~--p~~Q~L~----~~G--~~L~~d~~tL~~~ 794 (847)
..+|.|++++|+.+|=.++.+++|++ |.+=.|+ .+| +.|.+|+.-|.-.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~ 74 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQ 74 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH
Confidence 56889999999999999999999993 3333452 223 6676565554433
No 146
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=27.30 E-value=21 Score=39.44 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHH----------HhCCCCCCce-----EEeCCeecccccchHhhcCCC
Q 003108 753 ASTSIYQLKMMIWE----------SLGVVKENQI-----LHKGQRIIDQECATLADLNIF 797 (847)
Q Consensus 753 ~~~tv~~lK~~I~~----------~~gi~p~~Q~-----L~~~G~~L~~d~~tL~~~~i~ 797 (847)
+++||.+||..+++ +.+||.+--+ |.|+-|.+ .|++||++..-.
T Consensus 102 attSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv-~~~ktl~e~l~~ 160 (309)
T PF12754_consen 102 ATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPV-GDSKTLAEVLAD 160 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred CcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccC-CCcCcHHHHHhc
Confidence 47999999999999 8999987777 99999999 689999988755
No 147
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=24.57 E-value=2.8e+02 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=37.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
...+++.+..||.+|-.+ +|+++..=.+..||..+. .+.-+.+||.|.+.
T Consensus 15 ~~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vNg~iv~------~~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRA----VGFNTESAIAKVNGKVAL------EDDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CCcCcCCCCEEEEE
Confidence 356788888999877765 699886666678998873 24457899998876
No 148
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.34 E-value=1.5e+02 Score=26.36 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHhCCCCCCceEEe--CCeecccccchHhhcCCCCCCEEEEEe
Q 003108 755 TSIYQLKMMIWESLGVVKENQILHK--GQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 755 ~tv~~lK~~I~~~~gi~p~~Q~L~~--~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
.|+.+|+.+..++++|+...-+|.. .|..++ |+.= ..-.|..|..+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~Vd-dEey---F~tLp~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVD-DEEY---FQTLPDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBES-SCHH---HCCSSSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEc-cHHH---HhhCCCCCEEEEE
Confidence 7899999999999999987777765 788884 3322 2234566666653
No 149
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=24.15 E-value=2.8e+02 Score=24.38 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=38.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCC-----CC------CCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGV-----VK------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi-----~p------~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.++.+++. ..||.+|...+.++..- -. ..-++..||+....+ .. .-|.+||.|.+.
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~-~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWG-LG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCcc-CC---CCCCCCCEEEEe
Confidence 45677776 89999999999988641 11 124556788877433 21 568899988875
No 150
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=24.01 E-value=1.4e+02 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=35.2
Q ss_pred EEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhh
Q 003108 749 LKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLAD 793 (847)
Q Consensus 749 l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~ 793 (847)
+-|.+++||.++...|..+.+++|.+--|+.++..+ .-++||++
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp-~~s~~mg~ 88 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTP-AVTATVGD 88 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccC-CccchHHH
Confidence 369999999999999999999999985555666544 46677765
No 151
>smart00455 RBD Raf-like Ras-binding domain.
Probab=23.02 E-value=1.3e+02 Score=25.82 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=35.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC--eec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ--RII 784 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G--~~L 784 (847)
+...+.|-|.+||.++=+.|-++-|+.|+.=.|+..| +.|
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~l 51 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPL 51 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcce
Confidence 5668899999999999999999999999998998855 555
No 152
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=22.84 E-value=86 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.054 Sum_probs=24.8
Q ss_pred CeecccccchHhhcCCCCCCEEEEEecc
Q 003108 781 QRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 781 G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
|+.+.||++||++.+++-||-|.+-+++
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~ 137 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITP 137 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecC
Confidence 5555589999999999999999999888
No 153
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=21.78 E-value=1.1e+02 Score=26.36 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEE
Q 003108 755 TSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWV 804 (847)
Q Consensus 755 ~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l 804 (847)
+|+.+|.....++||++ ..-.|.-+|-++ +|=.. |.+||.|.+
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeI-dDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEI-DDIDV-----IRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEE-eEEEE-----EEcCCEEEE
Confidence 79999999999999997 566677788888 44322 567777765
No 154
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=21.25 E-value=77 Score=28.47 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCccHHHHHHHH-HHHhCCCCC----CceEEeCCee---cccccchHhhcCCCCCCEEEEEecc
Q 003108 753 ASTSIYQLKMMI-WESLGVVKE----NQILHKGQRI---IDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 753 ~~~tv~~lK~~I-~~~~gi~p~----~Q~L~~~G~~---L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..+|+.+|-.+| ..++|+... ..+++|..-. =....++|+++||..|+.|.+.+..
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 357888888875 345666552 2233333222 1123689999999999999988544
No 155
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.66 E-value=4.4e+02 Score=25.95 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=48.6
Q ss_pred EeecCCeEEEEeeeeEEecC---CCceeccCceeeeceeeccccccCCCCCCCceeEEeEEEeeeccccCCceEEE
Q 003108 53 LRSLPDVLNFQLKRCVFLPK---TTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIA 125 (847)
Q Consensus 53 i~~lP~vLii~LkRF~~d~~---~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a 125 (847)
+..--.-+.+-++||.+... .....+...-+.|...+....---.........+|-||-.+-|.. -+||-.-
T Consensus 30 ~~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e~-p~G~v~L 104 (138)
T PF11164_consen 30 WLPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGEA-PAGHVLL 104 (138)
T ss_pred EcccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCCC-CCcEEEE
Confidence 33344678999999999765 233455666667766655554322333346899999999999885 7788553
No 156
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=20.65 E-value=55 Score=35.30 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=55.2
Q ss_pred ccccccCCCCCCCCccccccccHHHHHHHHHhcCCCCCCCchhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhhhcCC
Q 003108 328 TSIQCLHGKVPESKIGSMKRISSKAWNKFFFKYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGK 407 (847)
Q Consensus 328 ~~llC~Hg~l~p~k~~~~krIs~~aw~~L~~~ygGgP~l~~~~~C~~C~~~~~~~~~~~~~~~~rr~~~~~v~~~~~~~~ 407 (847)
+-|-|.||..--+....|+++|.+-|..|.. |+-|....+ +.+.+.--....+
T Consensus 86 ~~~~Ckq~~~~l~si~s~ndlPse~W~El~D-------------cWsCH~Dy~--------------e~kS~~ggp~t~~ 138 (321)
T COG5629 86 DGFRCKQGNEILHSIRSMNDLPSEGWEELID-------------CWSCHNDYC--------------EFKSMLGGPLTPR 138 (321)
T ss_pred hhhcccccchhhhhhhhhhhCchhhHHHHHH-------------HHhhccchh--------------hhHhhcCCCCCcC
Confidence 3578999988888889999999999999876 888986432 1111111122333
Q ss_pred CcCceeEeehHHHHHHHHhccCCCCCCCCCCCCceeecC
Q 003108 408 LVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 446 (847)
Q Consensus 408 ~~~~~y~ISk~WLr~W~~~~~~~~P~~iDn~~n~dilC~ 446 (847)
+.+..-+||...|. ....+-+|...-+||-.+.|.
T Consensus 139 P~~~~~llg~sy~l----i~~a~legkvaygpNfklhCs 173 (321)
T COG5629 139 PREGGLLLGDSYLL----INDADLEGKVAYGPNFKLHCS 173 (321)
T ss_pred cCCCceEeeeeEEE----echhccCCccccCCCcceeee
Confidence 44444566666544 222334555555666668884
No 157
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=20.43 E-value=84 Score=30.13 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=17.8
Q ss_pred eCCeecccccchHhhcCCCCCCEEEEE
Q 003108 779 KGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 779 ~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+.|+...+|++||++++...||-|.+-
T Consensus 93 ~~g~~~~d~~kTL~~~~F~iGDyidva 119 (120)
T PF06487_consen 93 VSGRKGPDDNKTLADLRFVIGDYIDVA 119 (120)
T ss_dssp ETTB--TTTTSBCGGGT--TT-EEEEE
T ss_pred ECCCCCCCcccCHhhCCcccCCEEEEe
Confidence 345444489999999999999999875
No 158
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.22 E-value=1.7e+02 Score=25.97 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHhCCCCCCceEE--eCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 755 TSIYQLKMMIWESLGVVKENQILH--KGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 755 ~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
.|+.+|+.+..++++++...-+|+ -.|..++ |+.=. .-.|..|+.++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVd-dEeYF---~tLp~nT~l~~l 70 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVD-DEEYF---QTLPDNTVLMLL 70 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEc-cHHHH---hcCCCCcEEEEE
Confidence 789999999999999976555554 5788883 43222 223555655553
No 159
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.14 E-value=2.3e+02 Score=24.65 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=32.1
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 781 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G 781 (847)
.-.+.|.|.+||.++=+++.++-|+.|+.=.|++.|
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 447899999999999999999999999998887664
Done!