Query 003108
Match_columns 847
No_of_seqs 479 out of 1901
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nb8_A Ubiquitin carboxyl-term 100.0 1.2E-35 4.1E-40 330.1 16.0 208 1-265 137-345 (353)
2 2y6e_A Ubiquitin carboxyl-term 100.0 1.6E-34 5.5E-39 322.1 18.5 145 1-148 178-342 (367)
3 2f1z_A Ubiquitin carboxyl-term 100.0 4E-34 1.4E-38 333.9 16.3 206 1-263 306-512 (522)
4 2gfo_A Ubiquitin carboxyl-term 100.0 8.6E-34 2.9E-38 320.1 16.0 145 1-148 232-379 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 2.7E-33 9.3E-38 308.2 16.3 145 1-149 178-327 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 1E-32 3.4E-37 304.5 12.9 142 1-148 186-334 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 6.5E-32 2.2E-36 304.4 12.7 143 1-149 179-371 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 1.5E-31 5E-36 303.1 15.3 144 1-149 171-391 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 2.4E-31 8.1E-36 306.7 16.0 144 1-148 305-457 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.1E-28 3.7E-33 301.6 16.3 92 1-96 500-623 (854)
11 3plu_A Ubiquitin-like modifier 99.6 3.2E-15 1.1E-19 132.7 7.8 62 743-805 30-91 (93)
12 2fnj_B Transcription elongatio 99.5 7.2E-15 2.5E-19 136.5 7.7 77 741-818 8-93 (118)
13 4ajy_B Transcription elongatio 99.5 8.1E-15 2.8E-19 135.7 7.9 77 741-818 8-93 (118)
14 1wju_A NEDD8 ultimate buster-1 99.5 2.4E-14 8.3E-19 129.4 8.1 61 745-806 30-90 (100)
15 1uh6_A Ubiquitin-like 5; beta- 99.5 5E-14 1.7E-18 127.4 7.4 60 745-805 39-98 (100)
16 4dbg_A Ranbp-type and C3HC4-ty 99.5 1E-13 3.6E-18 126.3 8.0 63 745-808 37-100 (105)
17 3phx_B Ubiquitin-like protein 99.4 2E-13 6.9E-18 118.3 8.5 63 745-808 15-77 (79)
18 2kk8_A Uncharacterized protein 99.4 2.1E-13 7.2E-18 120.1 7.9 62 745-807 21-83 (84)
19 2kj6_A Tubulin folding cofacto 99.4 2.5E-13 8.7E-18 122.7 7.7 63 745-807 27-95 (97)
20 2kjr_A CG11242; UBL, ubiquitin 99.4 3.6E-13 1.2E-17 121.3 7.7 62 745-806 28-94 (95)
21 4b6w_A Tubulin-specific chaper 99.4 3E-13 1E-17 119.6 5.8 63 745-808 15-84 (86)
22 2lxa_A Ubiquitin-like protein 99.4 3.9E-13 1.3E-17 119.0 5.9 65 745-810 12-80 (87)
23 4fbj_B NEDD8; effector-HOST ta 99.4 8.1E-13 2.8E-17 117.3 7.9 64 744-808 10-73 (88)
24 4a3p_A Ubiquitin carboxyl-term 99.4 1.4E-11 4.7E-16 127.5 18.1 188 519-808 8-209 (217)
25 1v2y_A 3300001G02RIK protein; 99.4 5.3E-13 1.8E-17 122.0 6.2 71 743-813 16-101 (105)
26 2uyz_B Small ubiquitin-related 99.4 8.1E-13 2.8E-17 114.4 6.9 63 745-808 14-76 (79)
27 2faz_A Ubiquitin-like containi 99.3 1.4E-12 4.8E-17 112.6 8.0 62 745-807 13-76 (78)
28 4eew_A Large proline-rich prot 99.3 1.2E-12 4E-17 115.9 7.6 61 744-806 27-87 (88)
29 3v6c_B Ubiquitin; structural g 99.3 1.5E-12 5.3E-17 116.0 8.4 63 744-807 27-89 (91)
30 2hj8_A Interferon-induced 17 k 99.3 1.2E-12 4.2E-17 116.0 7.3 63 745-808 15-77 (88)
31 2bwf_A Ubiquitin-like protein 99.3 1.8E-12 6.3E-17 111.3 8.1 63 744-807 13-75 (77)
32 2kan_A Uncharacterized protein 99.3 1.8E-12 6E-17 116.6 8.1 63 745-808 25-88 (94)
33 4dwf_A HLA-B-associated transc 99.3 1.6E-12 5.4E-17 115.6 7.7 63 744-808 15-77 (90)
34 2l7r_A Ubiquitin-like protein 99.3 1.9E-12 6.5E-17 116.1 8.0 64 744-808 27-90 (93)
35 1wyw_B Ubiquitin-like protein 99.3 1.6E-12 5.4E-17 117.6 7.5 64 744-808 31-94 (97)
36 3dbh_I NEDD8; cell cycle, acti 99.3 1.9E-12 6.5E-17 114.2 7.7 63 745-808 23-85 (88)
37 4a20_A Ubiquitin-like protein 99.3 1.4E-12 4.6E-17 118.1 6.8 62 746-808 33-96 (98)
38 1ndd_A NEDD8, protein (ubiquit 99.3 3E-12 1E-16 109.4 8.3 63 745-808 11-73 (76)
39 2wyq_A HHR23A, UV excision rep 99.3 3.2E-12 1.1E-16 112.1 8.5 64 744-808 15-81 (85)
40 2kd0_A LRR repeats and ubiquit 99.3 2.4E-12 8.2E-17 113.5 7.5 63 744-807 21-83 (85)
41 3m62_B UV excision repair prot 99.3 2.1E-12 7E-17 118.8 6.9 64 744-808 11-74 (106)
42 1v5o_A 1700011N24RIK protein; 99.3 2.7E-12 9.2E-17 117.1 7.0 64 745-808 22-85 (102)
43 1wy8_A NP95-like ring finger p 99.3 5.5E-12 1.9E-16 111.7 8.8 63 745-808 19-82 (89)
44 3n3k_B Ubiquitin; hydrolase, p 99.3 3.8E-12 1.3E-16 111.5 7.6 63 745-808 14-76 (85)
45 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 4.1E-12 1.4E-16 112.0 7.9 63 745-808 18-80 (87)
46 1sif_A Ubiquitin; hydrophobic 99.3 4.2E-12 1.4E-16 112.6 7.9 63 745-808 20-82 (88)
47 2kdb_A Homocysteine-responsive 99.3 2.1E-12 7.3E-17 117.1 6.1 59 746-805 37-99 (99)
48 1uel_A HHR23B, UV excision rep 99.3 5.4E-12 1.8E-16 113.5 8.7 64 744-808 10-76 (95)
49 2dzi_A Ubiquitin-like protein 99.3 4.3E-12 1.5E-16 110.1 7.7 62 745-807 18-79 (81)
50 3jyu_A Ubiquitin carboxyl-term 99.3 6.6E-11 2.3E-15 123.5 18.0 191 519-808 17-221 (231)
51 3m63_B Ubiquitin domain-contai 99.3 1.9E-12 6.4E-17 118.0 5.0 64 743-807 36-99 (101)
52 4hcn_B Polyubiquitin, ubiquiti 99.3 4.4E-12 1.5E-16 114.8 7.4 64 744-808 32-95 (98)
53 1v6e_A Cytoskeleton-associated 99.3 3.8E-12 1.3E-16 114.6 6.8 64 745-808 19-88 (95)
54 1ttn_A DC-UBP, dendritic cell- 99.3 6.1E-12 2.1E-16 115.6 8.2 64 744-808 33-96 (106)
55 3a9j_A Ubiquitin; protein comp 99.3 7.5E-12 2.6E-16 106.9 8.1 63 745-808 11-73 (76)
56 2dzm_A FAS-associated factor 1 99.3 4.9E-12 1.7E-16 114.7 6.9 65 742-808 16-82 (100)
57 3mtn_B UBA80, ubcep1, ubiquiti 99.3 8.1E-12 2.8E-16 109.2 8.1 63 745-808 14-76 (85)
58 1wgd_A Homocysteine-responsive 99.3 5.9E-12 2E-16 112.8 7.2 63 745-808 20-86 (93)
59 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 8.1E-12 2.8E-16 112.2 8.1 63 745-808 12-74 (96)
60 2klc_A Ubiquilin-1; ubiquitin- 99.3 8.5E-12 2.9E-16 113.6 8.2 64 744-808 34-97 (101)
61 1se9_A Ubiquitin family; ubiqu 99.3 4.2E-12 1.4E-16 119.3 6.3 63 745-808 27-103 (126)
62 1wgh_A Ubiquitin-like 3, HCG-1 99.3 6.6E-12 2.3E-16 116.8 7.3 64 744-808 26-99 (116)
63 1we7_A SF3A1 protein; structur 99.3 9.2E-12 3.1E-16 116.1 8.3 66 742-808 43-108 (115)
64 1yqb_A Ubiquilin 3; structural 99.2 9.9E-12 3.4E-16 113.0 8.0 62 746-808 33-94 (100)
65 1wx8_A Riken cDNA 4931431F19; 99.2 5.3E-12 1.8E-16 113.6 6.1 64 744-808 26-89 (96)
66 2kdi_A Ubiquitin, vacuolar pro 99.2 1.1E-11 3.7E-16 115.4 7.9 63 745-808 20-82 (114)
67 2gow_A HCG-1 protein, ubiquiti 99.2 6.5E-12 2.2E-16 118.5 6.1 64 744-808 27-100 (125)
68 1we6_A Splicing factor, putati 99.2 1.5E-11 5E-16 114.0 7.9 64 744-808 40-104 (111)
69 1wxv_A BAG-family molecular ch 99.2 1.7E-11 6E-16 109.4 8.2 64 745-808 17-85 (92)
70 1yx5_B Ubiquitin; proteasome, 99.2 1.9E-11 6.5E-16 110.5 8.2 63 745-808 11-73 (98)
71 1v5t_A 8430435I17RIK protein; 99.2 1.4E-11 4.6E-16 109.9 7.1 64 744-808 16-83 (90)
72 1j8c_A Ubiquitin-like protein 99.2 1.9E-11 6.5E-16 115.6 8.2 64 744-808 41-104 (125)
73 3vdz_A Ubiquitin-40S ribosomal 99.2 2E-11 6.9E-16 113.1 8.0 63 745-808 46-108 (111)
74 2daf_A FLJ35834 protein; hypot 99.2 2.1E-11 7.1E-16 112.3 7.7 63 745-808 27-89 (118)
75 2dzj_A Synaptic glycoprotein S 99.2 1.2E-11 4E-16 109.8 5.6 59 747-806 25-87 (88)
76 3b1l_X E3 ubiquitin-protein li 98.8 1.7E-12 5.7E-17 111.4 0.0 62 745-807 11-72 (76)
77 3rt3_B Ubiquitin-like protein 99.2 2.7E-11 9.1E-16 119.0 8.5 64 744-808 91-154 (159)
78 1wgg_A Ubiquitin carboxyl-term 99.2 1.2E-11 4.2E-16 111.5 5.4 63 744-808 16-79 (96)
79 3l0w_B Monoubiquitinated proli 99.2 3.1E-11 1.1E-15 120.1 8.7 64 744-808 10-73 (169)
80 1v86_A DNA segment, CHR 7, way 99.2 1.4E-11 4.8E-16 110.9 5.7 63 744-808 26-88 (95)
81 1wx7_A Ubiquilin 3; ubiquitin- 99.2 3E-11 1E-15 110.9 7.9 62 746-808 28-89 (106)
82 1t0y_A Tubulin folding cofacto 99.2 2.4E-11 8.1E-16 114.5 6.8 65 745-809 18-88 (122)
83 2ojr_A Ubiquitin; lanthide-bin 99.1 6.5E-11 2.2E-15 109.6 8.5 63 745-808 46-108 (111)
84 3q3f_A Ribonuclease/ubiquitin 99.1 4.3E-11 1.5E-15 120.6 7.7 64 744-808 115-178 (189)
85 3rt3_B Ubiquitin-like protein 99.1 6.3E-11 2.2E-15 116.3 8.0 64 744-808 12-77 (159)
86 3u5e_m 60S ribosomal protein L 99.1 5.6E-12 1.9E-16 119.8 0.0 63 745-808 11-73 (128)
87 1x1m_A Ubiquitin-like protein 99.1 9.4E-11 3.2E-15 107.8 7.7 63 745-808 26-100 (107)
88 3u30_A Ubiquitin, linear DI-ub 99.1 7.2E-11 2.4E-15 117.6 7.4 63 744-807 106-168 (172)
89 3u30_A Ubiquitin, linear DI-ub 99.1 9.6E-11 3.3E-15 116.7 8.1 64 744-808 30-93 (172)
90 1wf9_A NPL4 family protein; be 99.1 6E-11 2E-15 109.2 5.9 64 745-808 17-95 (107)
91 3u5c_f 40S ribosomal protein S 99.1 8.8E-12 3E-16 121.6 0.0 63 745-808 11-73 (152)
92 1wia_A Hypothetical ubiquitin- 99.1 1.1E-10 3.9E-15 104.7 5.4 61 745-808 18-78 (95)
93 3b08_A Polyubiquitin-C, ubiqui 99.0 3.5E-10 1.2E-14 109.6 8.3 63 745-808 11-73 (152)
94 1w6v_A Ubiquitin carboxyl-term 99.0 4.5E-10 1.5E-14 108.3 8.8 86 282-369 30-137 (141)
95 3b08_A Polyubiquitin-C, ubiqui 99.0 4.3E-10 1.5E-14 109.0 8.2 62 745-807 87-148 (152)
96 2vhf_A Ubiquitin carboxyl-term 99.0 4.9E-10 1.7E-14 122.6 8.8 78 53-141 163-309 (374)
97 2kzr_A Ubiquitin thioesterase 99.0 3.7E-10 1.3E-14 99.6 5.5 63 746-808 11-78 (86)
98 3ai5_A Yeast enhanced green fl 98.9 1.2E-09 4E-14 117.8 8.3 62 745-807 244-305 (307)
99 2xzm_9 RPS31E; ribosome, trans 98.9 1.2E-10 4E-15 116.8 0.0 59 744-808 10-68 (189)
100 4a3p_A Ubiquitin carboxyl-term 98.9 1.8E-09 6.3E-14 111.5 8.8 85 282-368 6-112 (217)
101 2io1_B Small ubiquitin-related 98.9 2.9E-09 1E-13 95.5 7.4 64 744-808 17-80 (94)
102 1wjn_A Tubulin-folding protein 98.8 3.8E-09 1.3E-13 95.2 7.0 65 744-808 22-93 (97)
103 3shq_A UBLCP1; phosphatase, hy 98.8 2.7E-09 9.3E-14 116.4 6.1 64 744-808 14-80 (320)
104 1wm3_A Ubiquitin-like protein 98.8 7.7E-09 2.6E-13 88.1 7.4 61 744-805 11-71 (72)
105 3jyu_A Ubiquitin carboxyl-term 98.8 5.6E-09 1.9E-13 108.9 7.4 86 282-369 15-122 (231)
106 2io0_B Small ubiquitin-related 98.7 1.8E-08 6.1E-13 89.8 7.4 64 744-808 15-78 (91)
107 3a4r_A Nfatc2-interacting prot 98.7 3E-08 1E-12 86.0 8.6 59 746-805 20-78 (79)
108 1oqy_A HHR23A, UV excision rep 98.7 6.6E-09 2.3E-13 115.0 5.5 63 744-807 17-83 (368)
109 1w6v_A Ubiquitin carboxyl-term 98.7 6.1E-08 2.1E-12 93.3 11.0 82 534-630 44-133 (141)
110 2d07_B Ubiquitin-like protein 98.6 4.6E-08 1.6E-12 87.5 7.4 62 745-807 28-89 (93)
111 1wz0_A Ubiquitin-like protein 98.6 5.1E-08 1.7E-12 89.0 6.7 64 744-808 34-97 (104)
112 2k8h_A Small ubiquitin protein 98.6 5.6E-08 1.9E-12 89.5 6.5 64 744-808 36-99 (110)
113 2eke_C Ubiquitin-like protein 98.6 7.9E-08 2.7E-12 87.9 6.8 64 743-807 39-102 (106)
114 3kyd_D Small ubiquitin-related 98.1 6.5E-06 2.2E-10 76.0 7.9 63 744-807 50-112 (115)
115 3pge_A SUMO-modified prolifera 98.0 6.3E-06 2.2E-10 83.4 7.1 65 743-808 37-101 (200)
116 4efo_A Serine/threonine-protei 98.0 4.5E-06 1.5E-10 74.2 5.2 41 745-785 24-64 (94)
117 2pjh_A Protein NPL4, nuclear p 97.9 8.2E-06 2.8E-10 70.8 4.1 61 745-805 14-78 (80)
118 3tix_A Ubiquitin-like protein 97.8 1.5E-05 5E-10 79.2 6.0 66 743-809 65-130 (207)
119 3v7o_A Minor nucleoprotein VP3 97.4 2.2E-05 7.4E-10 79.0 0.0 65 743-808 29-93 (227)
120 3goe_A DNA repair protein RAD6 97.4 0.00063 2.1E-08 57.7 8.5 61 745-806 20-81 (82)
121 3uf8_A Ubiquitin-like protein 96.9 0.0013 4.5E-08 67.2 7.7 64 744-808 30-93 (209)
122 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.00092 3.1E-08 62.8 5.2 60 745-805 22-120 (128)
123 2jxx_A Nfatc2-interacting prot 96.7 0.0041 1.4E-07 55.7 7.7 60 745-805 37-96 (97)
124 3ix6_A TS, tsase, thymidylate 96.4 0.00052 1.8E-08 75.2 0.0 64 744-808 30-93 (360)
125 2l76_A Nfatc2-interacting prot 95.9 0.036 1.2E-06 49.1 9.2 63 744-807 30-92 (95)
126 4da1_A Protein phosphatase 1K, 95.8 0.0015 5E-08 73.1 0.0 65 744-809 39-103 (389)
127 3qx1_A FAS-associated factor 1 95.6 0.022 7.5E-07 49.4 6.8 61 746-807 19-83 (84)
128 2al3_A TUG long isoform; TUG U 95.0 0.065 2.2E-06 47.0 7.5 63 745-808 20-82 (90)
129 2bps_A YUKD protein; ubiquitin 94.6 0.042 1.4E-06 47.4 5.4 59 745-804 17-80 (81)
130 2dzk_A UBX domain-containing p 92.1 0.29 9.9E-06 44.5 6.9 63 745-807 24-90 (109)
131 4e71_A Plexin-B2, MM1; transme 91.2 0.35 1.2E-05 44.0 6.3 60 746-805 25-108 (111)
132 2r2o_A Plexin-B1; effector dom 90.4 0.61 2.1E-05 44.0 7.3 61 745-805 41-126 (138)
133 1wj4_A KIAA0794 protein; UBX d 90.4 0.39 1.3E-05 44.8 6.0 63 745-808 54-120 (124)
134 2cr5_A Reproduction 8; UBX dom 89.3 0.95 3.2E-05 41.0 7.6 62 746-808 35-99 (109)
135 4e74_A Plexin-A4; RBD, structu 88.7 1.1 3.6E-05 41.3 7.4 61 745-805 27-112 (117)
136 3h6n_A Plexin-D1; structural g 87.2 1.4 4.8E-05 40.9 7.3 63 745-807 17-104 (127)
137 3kuz_A Plexin-C1; structural g 85.5 1.2 4.2E-05 41.2 5.9 61 745-805 39-124 (126)
138 1s3s_G P47 protein; AAA ATPase 84.9 1.3 4.5E-05 41.3 6.0 58 745-802 63-123 (127)
139 2kvr_A Ubiquitin carboxyl-term 79.5 1.7 5.8E-05 40.7 4.5 33 747-779 58-90 (130)
140 3onh_A Ubiquitin-activating en 74.1 5.5 0.00019 37.0 6.2 60 748-808 9-80 (127)
141 3ivf_A Talin-1; FERM domain, c 66.6 7.8 0.00027 42.3 6.6 61 744-805 12-82 (371)
142 3hm6_X Plexin-B1; structural g 64.0 10 0.00036 44.0 7.0 62 745-806 274-360 (644)
143 3ig3_A Plxna3 protein; plexin 60.5 14 0.00047 42.9 7.2 64 745-808 247-335 (627)
144 1oey_A P67-PHOX, neutrophil cy 59.4 10 0.00035 32.6 4.6 37 745-781 14-50 (83)
145 1ryj_A Unknown; beta/alpha pro 49.4 51 0.0017 26.8 7.2 50 746-805 15-64 (70)
146 1y8x_B Ubiquitin-activating en 45.0 8.7 0.0003 34.1 1.8 60 746-805 6-82 (98)
147 4eut_A Serine/threonine-protei 44.9 24 0.00081 38.3 5.8 40 745-784 322-361 (396)
148 2ylm_A Ubiquitin carboxyl-term 44.7 15 0.00053 42.2 4.4 32 747-778 38-69 (530)
149 2l32_A Small archaeal modifier 43.5 32 0.0011 28.6 5.1 49 746-805 12-60 (74)
150 3ge3_C Toluene-4-monooxygenase 39.5 1E+02 0.0035 26.4 7.4 60 746-806 16-82 (84)
151 2juo_A GA-binding protein alph 37.2 68 0.0023 27.6 6.0 57 749-806 7-63 (89)
152 2ylm_A Ubiquitin carboxyl-term 37.0 26 0.0009 40.3 4.7 61 748-808 150-218 (530)
153 1tyg_B YJBS; alpha beta barrel 36.6 74 0.0025 27.4 6.4 55 745-805 26-81 (87)
154 3qa8_A MGC80376 protein; kinas 35.9 33 0.0011 40.7 5.5 48 747-794 324-371 (676)
155 2kl0_A Putative thiamin biosyn 34.1 78 0.0027 26.2 6.0 51 748-805 9-59 (73)
156 2daj_A KIAA0977 protein, COBL- 33.7 44 0.0015 28.8 4.3 56 748-807 24-82 (91)
157 1f0z_A THis protein; ubiquitin 27.5 98 0.0034 24.6 5.4 52 748-805 9-60 (66)
158 2inc_C TOUB protein; DIIRON, 4 27.4 1.9E+02 0.0066 24.7 7.2 60 746-806 14-81 (83)
159 2k5p_A THis protein, thiamine- 26.6 78 0.0027 26.5 4.7 52 748-805 9-63 (78)
160 3po0_A Small archaeal modifier 26.3 1.6E+02 0.0056 24.6 6.9 55 745-805 18-83 (89)
161 1rws_A Hypothetical protein PF 26.0 44 0.0015 27.8 3.1 51 745-805 21-71 (77)
162 3mp2_A Non-structural protein 22.6 68 0.0023 32.3 4.2 34 109-147 162-195 (211)
163 2cu3_A Unknown function protei 22.6 1.3E+02 0.0046 23.7 5.3 51 748-805 8-58 (64)
164 2zjd_A Microtubule-associated 22.2 1.1E+02 0.0036 28.5 5.1 47 748-794 56-103 (130)
165 3u52_E Phenol hydroxylase comp 21.2 1.7E+02 0.0057 26.7 6.0 64 745-808 38-110 (119)
166 1vjk_A Molybdopterin convertin 20.6 2.7E+02 0.0092 23.9 7.3 55 745-805 27-92 (98)
No 1
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.2e-35 Score=330.09 Aligned_cols=208 Identities=32% Similarity=0.526 Sum_probs=162.3
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+|++|+|+|++..+|.+||..|+.+|.|+|+|+|.|+.|+ ++.|.|++.|.+||+||+|||+||.|+..++...|++
T Consensus 137 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~ 215 (353)
T 1nb8_A 137 REDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 215 (353)
T ss_dssp EEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCC
T ss_pred eeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecC
Confidence 378999999999999999999999999999999999999997 6899999999999999999999999998777789999
Q ss_pred ceeeeceeeccccccCCCC-CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSG 159 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~ 159 (847)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..++.||.|||+.|++++.+.+.....|+.
T Consensus 216 ~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~ 294 (353)
T 1nb8_A 216 DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294 (353)
T ss_dssp CCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC
T ss_pred cEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCC
Confidence 9999999999999997643 23689999999999999 599999999997678999999999999998654332222110
Q ss_pred CccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEecccccccccccccccccchhhhhh
Q 003108 160 SKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESE 239 (847)
Q Consensus 160 ~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~ 239 (847)
.. ......+.+||||||+|.+.... .+
T Consensus 295 ~~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~-----~~----------- 321 (353)
T 1nb8_A 295 DD-------------------------------------DLSVRHCTNAYMLVYIRESKLSE-----VL----------- 321 (353)
T ss_dssp --------------------------------------------CCEEEEEEEEEETTTHHH-----HT-----------
T ss_pred cc-------------------------------------ccccCcCCeEEEEEEEECchhhh-----hh-----------
Confidence 00 00011357899999999875321 11
Q ss_pred hhccCCCCCCChHHHHHHHHHHHHHH
Q 003108 240 MIFFNDDIFLPSHLGKDIKELNRSYL 265 (847)
Q Consensus 240 ~~~~~~~~~lP~~l~~~I~~~N~~f~ 265 (847)
..-....+|+++.+.+.++|..-.
T Consensus 322 --~~~~~~~~p~~~~~~~~~~~~~~~ 345 (353)
T 1nb8_A 322 --QAVTDHDIPQQLVERLQEEKRIEA 345 (353)
T ss_dssp --CCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred --cccCccccCHHHHHHHHHHHHHHH
Confidence 111234689999999998887654
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=322.09 Aligned_cols=145 Identities=30% Similarity=0.524 Sum_probs=132.6
Q ss_pred CCcceeEEeeCCC-------------------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEE
Q 003108 1 MEDFYELELNVKG-------------------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLN 61 (847)
Q Consensus 1 ~E~F~~LsL~v~~-------------------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLi 61 (847)
+|+|++|+|+|+. ..+|++||+.|+.+|.|+|+|+|+|++|+++++|+|++.|.+||+||+
T Consensus 178 ~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~ 257 (367)
T 2y6e_A 178 FDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILV 257 (367)
T ss_dssp EEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEE
T ss_pred EccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEE
Confidence 4799999999964 358999999999999999999999999999999999999999999999
Q ss_pred EEeeeeEEecCCCceeccCceeeece-eeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcC
Q 003108 62 FQLKRCVFLPKTTMKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDD 140 (847)
Q Consensus 62 i~LkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD 140 (847)
||||||.|+. ....|+++.|.||. .|||++|+.........|+|+|||+|.|+ +++|||+||+|+..++.||+|||
T Consensus 258 i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD 334 (367)
T 2y6e_A 258 VHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDD 334 (367)
T ss_dssp EEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEET
T ss_pred EEEeCeeecC--ccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECC
Confidence 9999999974 45789999999997 69999999877655789999999999998 69999999999876899999999
Q ss_pred CceeecCC
Q 003108 141 EHVSNLGH 148 (847)
Q Consensus 141 ~~Vt~v~~ 148 (847)
+.|++++.
T Consensus 335 ~~V~~v~~ 342 (367)
T 2y6e_A 335 SNVSLASE 342 (367)
T ss_dssp TEEEECCG
T ss_pred CCceECCH
Confidence 99999874
No 3
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=333.86 Aligned_cols=206 Identities=32% Similarity=0.539 Sum_probs=167.4
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+|++|+|+|++..+|.+||..|+.+|.|+|+|+|.|+.|+ +++|.|++.|.+||+||+|||+||.|+..++...|++
T Consensus 306 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~ 384 (522)
T 2f1z_A 306 REDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 384 (522)
T ss_dssp EEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECC
T ss_pred eeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcC
Confidence 378999999999999999999999999999999999999997 6899999999999999999999999998778889999
Q ss_pred ceeeeceeeccccccCCCC-CCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCC
Q 003108 81 SPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSG 159 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~ 159 (847)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..++.||+|||+.|++++.+.+.....++.
T Consensus 385 ~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~ 463 (522)
T 2f1z_A 385 DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 463 (522)
T ss_dssp CCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC
T ss_pred cEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCC
Confidence 9999999999999997643 23689999999999999 599999999997678999999999999998654433322210
Q ss_pred CccccCCCcccCCcccccccccCCCccccCCCccccCCCcccccccCceEEEEEEecccccccccccccccccchhhhhh
Q 003108 160 SKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESE 239 (847)
Q Consensus 160 ~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~ 239 (847)
.. ......+.+||||||+|.+.... .
T Consensus 464 ~~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~-----~------------ 489 (522)
T 2f1z_A 464 DD-------------------------------------DLSVRHCTNAYMLVYIRESKLSE-----V------------ 489 (522)
T ss_dssp ---------------------------------------------CEEEEEEEEEETTSHHH-----H------------
T ss_pred cc-------------------------------------ccccCcCCceEEEEEEECCchHH-----h------------
Confidence 00 00011357899999999875321 1
Q ss_pred hhccCCCCCCChHHHHHHHHHHHH
Q 003108 240 MIFFNDDIFLPSHLGKDIKELNRS 263 (847)
Q Consensus 240 ~~~~~~~~~lP~~l~~~I~~~N~~ 263 (847)
........+|++|.+.++++|..
T Consensus 490 -~~~~~~~~ip~~~~~~~~~e~~~ 512 (522)
T 2f1z_A 490 -LQAVTDHDIPQQLVERLQEEKRI 512 (522)
T ss_dssp -TCCCCTTTSCSHHHHHHHHTTTC
T ss_pred -hcccCccCCCHHHHHHHHHHHHH
Confidence 11123457999999988777653
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=8.6e-34 Score=320.06 Aligned_cols=145 Identities=30% Similarity=0.546 Sum_probs=133.1
Q ss_pred CCcceeEEeeCCC--CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceec
Q 003108 1 MEDFYELELNVKG--LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (847)
Q Consensus 1 ~E~F~~LsL~v~~--~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~K 78 (847)
+|+|++|+|+|+. ..+|++||+.|+.+|.|+|+|+|+|++|+.+++|.|++.|.+||+||+||||||.|+. ....|
T Consensus 232 ~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~K 309 (396)
T 2gfo_A 232 FEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQK 309 (396)
T ss_dssp EEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECS--SSEEE
T ss_pred cccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccC--cccee
Confidence 4799999999986 4599999999999999999999999999999999999999999999999999999975 35689
Q ss_pred cCceeeece-eeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003108 79 ITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (847)
Q Consensus 79 i~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~ 148 (847)
+++.|.||. .|||.+|+..+......|+|+|||+|.|+ +++|||+||+|+..++.||+|||+.|++++.
T Consensus 310 ~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~ 379 (396)
T 2gfo_A 310 LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDISV 379 (396)
T ss_dssp CCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESC-TTTCEEEEEEEETTTTEEEEEETTEEEECCH
T ss_pred cCceEecchhhccccccccCCCCCCceEEEEEEEEecCC-CCCCceEEEEcCCCCCCEEEEeCCCeEECCH
Confidence 999999996 69999999876555689999999999995 7999999999987679999999999999873
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=2.7e-33 Score=308.20 Aligned_cols=145 Identities=28% Similarity=0.504 Sum_probs=132.8
Q ss_pred CCcceeEEeeCCCC----CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCce
Q 003108 1 MEDFYELELNVKGL----KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (847)
Q Consensus 1 ~E~F~~LsL~v~~~----~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~ 76 (847)
+|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|+|++|+.++.|.|+..|.+||+||+|||+||.++. +..
T Consensus 178 ~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~--~~~ 255 (348)
T 3nhe_A 178 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESR--IRT 255 (348)
T ss_dssp EEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCS--SCC
T ss_pred eccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccC--Cce
Confidence 47999999999874 399999999999999999999999999999999999999999999999999998754 677
Q ss_pred eccCceeeece-eeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 77 KKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 77 ~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
.|+++.|.||. .|||.+|+..... ...|+|+|||+|.|+ +++|||+||+|+..++.||+|||+.|++++.+
T Consensus 256 ~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~ 327 (348)
T 3nhe_A 256 SKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSS 327 (348)
T ss_dssp CBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGG
T ss_pred eecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHH
Confidence 89999999995 7999999976554 689999999999997 69999999999877899999999999999743
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.98 E-value=1e-32 Score=304.51 Aligned_cols=142 Identities=27% Similarity=0.468 Sum_probs=127.0
Q ss_pred CCcceeEEeeCCC------CCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCC
Q 003108 1 MEDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTT 74 (847)
Q Consensus 1 ~E~F~~LsL~v~~------~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~ 74 (847)
+|+|++|+|+|+. ..+|++||+.|+.+|.++|+|+|+|++|++++.|.|+..|.+||+||+|||+||.++. +
T Consensus 186 ~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~--~ 263 (355)
T 3i3t_A 186 FEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR--G 263 (355)
T ss_dssp EEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCS--S
T ss_pred eccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCC--C
Confidence 3789999999975 3599999999999999999999999999999999999999999999999999999864 6
Q ss_pred ceeccCceeeece-eeccccccCCCCCCCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003108 75 MKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (847)
Q Consensus 75 ~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~ 148 (847)
...|+++.|.||. .|||.+|+..... ...|+|+|||+|.|+ +++|||+||+|. .+.||+|||+.|++++.
T Consensus 264 ~~~K~~~~v~fp~~~l~l~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~ 334 (355)
T 3i3t_A 264 SIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGS-VHYGHYTALCRC--QTGWHVYNDSRVSPVSE 334 (355)
T ss_dssp CCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE-TTEEEEEEEEEE--TTEEEEEETTEEEEECH
T ss_pred CceECCcceeCCccccCchhhccCCCC-CcceEEEEEEEecCC-CCCCeEEEEEEc--CCeEEEEcCCCcEECCH
Confidence 6789999999995 5999999876544 679999999999996 699999999997 56799999999999973
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.97 E-value=6.5e-32 Score=304.36 Aligned_cols=143 Identities=29% Similarity=0.384 Sum_probs=127.5
Q ss_pred CCcceeEEeeCCCC-CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceecc
Q 003108 1 MEDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (847)
Q Consensus 1 ~E~F~~LsL~v~~~-~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki 79 (847)
+|+|++|+|+|++. .+|++||..|+. |.++ |+|++|++.+.+.|+.+|.+||+||+|||+||.|+..++...|+
T Consensus 179 ~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki 253 (404)
T 2ayn_A 179 KENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKV 253 (404)
T ss_dssp EEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBC
T ss_pred eccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceecc
Confidence 47899999999875 589999999997 4454 89999999999999999999999999999999999877788999
Q ss_pred CceeeeceeeccccccCCC-------------------------------------------------CCCCceeEEeEE
Q 003108 80 TSPFCFPGELNMQRRLSEP-------------------------------------------------SQLDLIYDLSAV 110 (847)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~-------------------------------------------------~~~~~~Y~L~aV 110 (847)
++.|.||..|||.+|+... ......|+|+||
T Consensus 254 ~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~av 333 (404)
T 2ayn_A 254 LKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAV 333 (404)
T ss_dssp CCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEE
T ss_pred CceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEE
Confidence 9999999999999998631 112478999999
Q ss_pred EeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003108 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 111 I~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~~ 149 (847)
|+|.|.++++|||+||+|+ .++.||+|||+.|++++.+
T Consensus 334 v~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~~~ 371 (404)
T 2ayn_A 334 LTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPE 371 (404)
T ss_dssp EEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBCHH
T ss_pred EEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecCHH
Confidence 9999976799999999997 4789999999999999854
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.97 E-value=1.5e-31 Score=303.13 Aligned_cols=144 Identities=26% Similarity=0.433 Sum_probs=120.8
Q ss_pred CCcceeEEeeCCCC-CCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceecc
Q 003108 1 MEDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (847)
Q Consensus 1 ~E~F~~LsL~v~~~-~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki 79 (847)
.|+|++|+|+|++. .+|++||..|+.+ .++ |+|++|+..+.+.|+.+|.+||+||+|||+||.|+..++...|+
T Consensus 171 ~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki 245 (415)
T 1vjv_A 171 NESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKI 245 (415)
T ss_dssp CCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEEC
T ss_pred cccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhh
Confidence 48999999999875 5899999999974 444 89999999999999999999999999999999999888888999
Q ss_pred CceeeeceeeccccccCCC-------------------------------------------------------------
Q 003108 80 TSPFCFPGELNMQRRLSEP------------------------------------------------------------- 98 (847)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~------------------------------------------------------------- 98 (847)
++.|.||..|||.+|+...
T Consensus 246 ~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 325 (415)
T 1vjv_A 246 LRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWL 325 (415)
T ss_dssp CCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhh
Confidence 9999999999999997531
Q ss_pred --------------CCCCceeEEeEEEeeeccccCCceEEEEEEe-cCCCcEEEEcCCceeecCCC
Q 003108 99 --------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDEHVSNLGHH 149 (847)
Q Consensus 99 --------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~-~~~~~W~~fnD~~Vt~v~~~ 149 (847)
......|+|+|||+|.|.++++|||+||+|+ ..++.||+|||+.|++++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~ 391 (415)
T 1vjv_A 326 EEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKE 391 (415)
T ss_dssp HHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHH
T ss_pred hhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHH
Confidence 0124789999999999966799999999997 56899999999999999854
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.97 E-value=2.4e-31 Score=306.75 Aligned_cols=144 Identities=39% Similarity=0.678 Sum_probs=131.9
Q ss_pred CCcceeEEeeCCCCCCHHHHHHhhccceEecCCCccccCCCCCeeeeEEEEEEeecCCeEEEEeeeeEEecCCCceeccC
Q 003108 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (847)
Q Consensus 1 ~E~F~~LsL~v~~~~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~ 80 (847)
+|+|++|+|+|++..+|++||+.|+.+|.|+|++ |+|++|+.++.+.|+..|.+||+||+|||+||.|+. ++...|++
T Consensus 305 ~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~-~~~~~K~~ 382 (476)
T 3mhs_A 305 IDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLD 382 (476)
T ss_dssp EEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT-TSCEEECC
T ss_pred ccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC-CCCeEECC
Confidence 3789999999999999999999999999999765 999999999999999999999999999999999985 46788999
Q ss_pred ceeeeceeeccccccCCCCC---------CCceeEEeEEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003108 81 SPFCFPGELNMQRRLSEPSQ---------LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (847)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~---------~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~~ 148 (847)
+.|.||..|||.+|+..... ....|+|+|||+|.|+ +++|||++|+|. .+++||+|||+.|++++.
T Consensus 383 ~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~ 457 (476)
T 3mhs_A 383 DFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKI-SGGQWFKFNDSMVSSISQ 457 (476)
T ss_dssp CCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEEC-TTSCEEEEETTEEEEECH
T ss_pred EEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEEC-CCCcEEEEeCCceEECCH
Confidence 99999999999999876432 2578999999999998 699999999997 478999999999999974
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=301.63 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=85.4
Q ss_pred CCcceeEEeeCCCC--------------------------------CCHHHHHHhhccceEecCCCccccCCCCCeeeeE
Q 003108 1 MEDFYELELNVKGL--------------------------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDAT 48 (847)
Q Consensus 1 ~E~F~~LsL~v~~~--------------------------------~sL~d~L~~f~~~E~L~g~n~y~Ce~C~~~~~a~ 48 (847)
+|+|++|+|+|+.. .+|++||+.|+.+|.|+| |+|++|+.++.|.
T Consensus 500 ~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~ 576 (854)
T 3ihp_A 500 QRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAV 576 (854)
T ss_dssp EEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEE
T ss_pred eeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceee
Confidence 37899999999852 499999999999999997 9999999999999
Q ss_pred EEEEEeecCCeEEEEeeeeEEecCCCceeccCceeeeceeeccccccC
Q 003108 49 RSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLS 96 (847)
Q Consensus 49 k~~~i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~ 96 (847)
|+++|.+||+||+||||||.|+.. +...|+++.|.||..|||++|+.
T Consensus 577 K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~ 623 (854)
T 3ihp_A 577 KTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRG 623 (854)
T ss_dssp EEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBC
T ss_pred EEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhcc
Confidence 999999999999999999999865 77889999999999999999965
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.57 E-value=3.2e-15 Score=132.69 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=59.2
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
++++++++|.+++||.+||++|++++||||++|||+|+|++| +|+.||++|||++|+||+|-
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~L-kD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEc-cCcCCHHHcCCCCCCEEEEE
Confidence 558999999999999999999999999999999999999999 68899999999999999985
No 12
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.54 E-value=7.2e-15 Score=136.55 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=67.7
Q ss_pred cccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCC-------CCCEEEEEecc--ccc
Q 003108 741 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIF-------PGDKLWVQDSE--IHE 811 (847)
Q Consensus 741 r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~-------~~~~l~l~~~~--~~~ 811 (847)
|+.|.++.|+|++++||.+||.+|++++||||++|||+|+||+| +|++||++|||. .++||||+... ..|
T Consensus 8 r~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~L-eD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 8 RRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL-DDGKTLGECGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSSCBC
T ss_pred ecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeEC-CCCCCHHHcCcccccccCCCCCEEEEEecCCCcee
Confidence 34446799999999999999999999999999999999999999 788999999999 79999998763 456
Q ss_pred cCcccch
Q 003108 812 HRDIADE 818 (847)
Q Consensus 812 ~~~i~d~ 818 (847)
...|..+
T Consensus 87 ~l~i~~~ 93 (118)
T 2fnj_B 87 ALRIEPF 93 (118)
T ss_dssp CCCBCCC
T ss_pred eeEEecC
Confidence 6667666
No 13
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.54 E-value=8.1e-15 Score=135.69 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=67.2
Q ss_pred cccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCC-------CCEEEEEec--cccc
Q 003108 741 RKTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFP-------GDKLWVQDS--EIHE 811 (847)
Q Consensus 741 r~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~-------~~~l~l~~~--~~~~ 811 (847)
|+.|.++.|+|++++||.+||.+|++++||||++|||+|+||+| +|++||++|||.. ++||||+.+ +..|
T Consensus 8 kr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~L-eD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 8 RRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLL-DDGKTLGECGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTTTTTCCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred ecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeEC-CCcCCHHHcCCCcCcccCCCCCEEEEEEecCCCcc
Confidence 44556999999999999999999999999999999999999999 7899999999999 999999964 3445
Q ss_pred cCcccch
Q 003108 812 HRDIADE 818 (847)
Q Consensus 812 ~~~i~d~ 818 (847)
.-.|..+
T Consensus 87 ~l~i~p~ 93 (118)
T 4ajy_B 87 ALCIEPF 93 (118)
T ss_dssp CCCBCCC
T ss_pred ceEEecC
Confidence 5555544
No 14
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=2.4e-14 Score=129.43 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=57.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
+.+.|+|++++||.+||++|++++||||++|+|||+||+| +|+.||++|||.+|++|+|..
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL-~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQL-QLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEEC-CTTSBHHHHTCCSSEEEEEEC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeEC-CCCCcHHHcCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999 688999999999999996663
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=5e-14 Score=127.36 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=57.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+++.|+|++++||.+||++|++++||||++|||+|+||+| +|+.||++|||.+|+||+|.
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L-~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CSSCBHHHHTCCTTEEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999999999 68899999999999999997
No 16
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.45 E-value=1e-13 Score=126.27 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=59.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCC-CCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i-~~~~~l~l~~~~ 808 (847)
++++|+|++++||.+||++|++++||||++|||+|+|+.| +|++||++||| ++|++|||.+-.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll-~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA-RDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE-CTTCBTGGGTCCSTTCEEEEEECC
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc-cCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999999999999999999999999999999999977 78899999999 699999999765
No 17
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=118.30 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=59.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 15 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 6889999999999999999999999999999999999999 57899999999999999999653
No 18
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=2.1e-13 Score=120.08 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=58.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCee-cccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRI-IDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~-L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++.++|++++||.+||++|++++||||++|||+|+|++ | +|++||++|||.+|++|+|+.+
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL-~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVIL-REDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-CSSSBHHHHTCCTTSCEEEEEC
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEec-CCcCCHHHcCCCCCCEEEEEEc
Confidence 788999999999999999999999999999999999999 8 6889999999999999999853
No 19
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=2.5e-13 Score=122.66 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=57.9
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCe------ecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQR------IIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~------~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
..++++|++++||.+||++|++++||||++|||+|.|+ +|.+|++||++|||++|++|+|+++
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 46789999999999999999999999999999999884 3568999999999999999999965
No 20
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.40 E-value=3.6e-13 Score=121.30 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=57.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeC--Ce---ecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKG--QR---IIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~--G~---~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..++++|++++||.+||++|++++||||++|||+|. |+ +|.+|++||++|||++|++|+|++
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 468899999999999999999999999999999998 55 676899999999999999999996
No 21
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.38 E-value=3e-13 Score=119.60 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=57.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEe-------CCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK-------GQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~-------~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...+.+++++||.+||++|++++||||++|||+| .|++| +|++||++|||++|++|||++..
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l-~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM-ANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc-CCCCCHHHCCCCCCCEEEEEeCC
Confidence 45578899999999999999999999999999995 68888 78899999999999999999654
No 22
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.9e-13 Score=119.03 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred ceEEEE--ecCCccHHHHHHHH-HHHhCCCCCCceEEeCCeecccccchHhhcCC-CCCCEEEEEecccc
Q 003108 745 SFVNLK--VSASTSIYQLKMMI-WESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSEIH 810 (847)
Q Consensus 745 ~~~~l~--v~~~~tv~~lK~~I-~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i-~~~~~l~l~~~~~~ 810 (847)
++++|+ |++++||.+||++| ++++||||++|||+|+||+| +|+.||++||| .+|++|+|..+--.
T Consensus 12 ~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L-~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 12 PKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVL-HDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp SCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEEC-CTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEEC-cCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 445665 55999999999999 99999999999999999999 68899999999 79999999977633
No 23
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.37 E-value=8.1e-13 Score=117.26 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=60.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTTTTTCCTTCEEEEECBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEEC
Confidence 36789999999999999999999999999999999999999 67899999999999999999654
No 24
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=99.36 E-value=1.4e-11 Score=127.52 Aligned_cols=188 Identities=15% Similarity=0.274 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCCC-----CCCCCCCccccccccccccccccccccCCCcc
Q 003108 519 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGK-----NASSIEPEILDGVIDSLKCEKHLRLLERPPDL 593 (847)
Q Consensus 519 ~~r~~~~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~p~k-----~~~~~~P~~ldn~~~~llC~~H~~Ll~~~~~~ 593 (847)
+||+....+.. .++.+|..+|+||+.|+++|++||+.... ..+..+|++||| +.|+| .|+.....|..
T Consensus 8 ~Q~~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdN--s~L~~-~~~~~~Lk~~l- 80 (217)
T 4a3p_A 8 TQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL- 80 (217)
T ss_dssp HHHHHHHHHTT---CCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCC--GGGBC-CC---CBCSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHhhC-CCCCcccCcCc-
Confidence 45555555544 36788999999999999999999964321 111458999998 88888 55433223322
Q ss_pred ccccccccccCCCCCceeeeCHhHHHHHHHHhC---CCcccceEEEEeecCCCCcccccccchhcccCCCCCCCCCcccc
Q 003108 594 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEKGLSVIVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNE 670 (847)
Q Consensus 594 ~~~~g~~~q~~~~~~~~~~I~~~~W~~l~~~y~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (847)
.....+++|+++.|++|.+.|| |+++|. |..|..+
T Consensus 81 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~-R~vi~~~------------------------------ 118 (217)
T 4a3p_A 81 -----------IDELDYILLPTEGWNKLVSWYTLMEGQEPIA-RKVVEQG------------------------------ 118 (217)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCCE-EEEEEET------------------------------
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCCcc-eeEEecC------------------------------
Confidence 1122489999999999999999 777764 3322210
Q ss_pred ccCCCceeecCccchhhHHhHhHHHHHhhhhcccCceeEEEEecCCCCCccccccccCCCCCcccccccccccCceEEEE
Q 003108 671 IESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMFEPDRRASKRSRKTRSFVNLK 750 (847)
Q Consensus 671 ~~~~~~~~~t~p~~C~~C~~~~~~~~~~~~~~Y~~~~i~V~~v~~~~~~~~~~~~s~~~~~~~~r~s~R~r~~~~~~~l~ 750 (847)
. . |.-| -| -+.+++... +..+..+++.
T Consensus 119 -~-----~---------~~vE----------vy---P~~l~l~~~-------------------------~~~~~~~~~~ 145 (217)
T 4a3p_A 119 -M-----F---------CKVE----------VY---LTELKLCEN-------------------------GNMNNVVTRR 145 (217)
T ss_dssp -T-----E---------EEEC----------CS---CEEEEEEET-------------------------TEEEEEEEEE
T ss_pred -C-----e---------eEEE----------Ee---ccEEEEEec-------------------------CCCCcceEEE
Confidence 0 0 0000 01 111111110 1111345778
Q ss_pred ecCCccHHHHHHHHHHHhCCCCC-CceEEe---CC--eecccccchHhhcCCCCCCEEEEEecc
Q 003108 751 VSASTSIYQLKMMIWESLGVVKE-NQILHK---GQ--RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 751 v~~~~tv~~lK~~I~~~~gi~p~-~Q~L~~---~G--~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+|..+||.+|+.++-..++|+++ +=||.. .+ ..|.+++.||++++|..|..|.|-...
T Consensus 146 ~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 146 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp ECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred EcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 89999999999999999999997 578842 22 566656789999999999999988554
No 25
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=5.3e-13 Score=122.05 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=63.1
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCC---------------CCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVK---------------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p---------------~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
.++++.|+|.+++||.+||++|++++|||| .+|+|+|+|++|.||++||++|||.+|++|||+..
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEeh
Confidence 348999999999999999999999999998 46799999999977889999999999999999976
Q ss_pred cccccC
Q 003108 808 EIHEHR 813 (847)
Q Consensus 808 ~~~~~~ 813 (847)
.--.++
T Consensus 96 lr~~~~ 101 (105)
T 1v2y_A 96 LGQKSG 101 (105)
T ss_dssp SCSCCC
T ss_pred hccCCC
Confidence 643333
No 26
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.35 E-value=8.1e-13 Score=114.45 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+||+|+|+...
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L-~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHHTCCTTEEEEEEECC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEe-CCCCCHHHcCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57799999999999999999653
No 27
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=1.4e-12 Score=112.56 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=57.9
Q ss_pred ceE-EEE-ecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFV-NLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~-~l~-v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++ .++ |++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+..
T Consensus 13 ~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L-~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 13 RQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp SCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEe
Confidence 454 899 9999999999999999999999999999999999 5889999999999999999864
No 28
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=115.91 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=57.4
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
++++.++|++++||.+||.+|++++||||++|||+|+|+.| +|+.||++||| +|++|||+.
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTC-TTEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCCCcHHHcCC-CCcEEEEEE
Confidence 36788999999999999999999999999999999999999 57899999999 899999985
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.35 E-value=1.5e-12 Score=116.04 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=59.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++.|+|++++||.+||.+|++++|||+++|+|+|+|+.| +|+.||++|||.+|++|+|++.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTCBTGGGTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeEC-CCcCcHHHCCCCCCCEEEEEEe
Confidence 37889999999999999999999999999999999999999 5779999999999999999865
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=116.03 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=59.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+.+.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCC-CTTSBHHHHHCSTTCEEEEEEC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 6788999999999999999999999999999999999999 68899999999999999999654
No 31
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.34 E-value=1.8e-12 Score=111.29 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++.++|++++||.+||.+|++.+|||+++|+|+|+|+.| +|++||++|||.+|++|+|+.+
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEc-CCCCCHHHcCCCCCCEEEEEEc
Confidence 35788999999999999999999999999999999999999 5779999999999999999854
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=1.8e-12 Score=116.63 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=59.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeeccccc-chHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQEC-ATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~-~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++++||||++|+|+|+||+| +|+ .||++|||.+|++|+|++..
T Consensus 25 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 25 KQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIEL-ADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEE-CCTTSBHHHHTCCTTEEEEEEECC
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEEC-CCCcccHHHCCCCCCCEEEEEEeC
Confidence 3788999999999999999999999999999999999999 466 99999999999999999665
No 33
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.33 E-value=1.6e-12 Score=115.57 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=59.1
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++|||+++|||+|+|+.| +|+.||++||| +|++|||+...
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L-~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTC-TTEEEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeEC-CCCCCHHHcCC-CCcEEEEEecC
Confidence 36789999999999999999999999999999999999999 57899999999 89999999665
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=116.13 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=60.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+...
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL-EDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEEC-CTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999999999999 68899999999999999999653
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.33 E-value=1.6e-12 Score=117.57 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=60.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 31 g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L-~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 31 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEc-CCCCCHHHCCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 57899999999999999999654
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.33 E-value=1.9e-12 Score=114.22 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 23 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 23 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTSBGGGGTCCTTCEEEECCCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 6789999999999999999999999999999999999999 57899999999999999998653
No 37
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.33 E-value=1.4e-12 Score=118.11 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=57.4
Q ss_pred eEEEEecCCccHHHHHHHH-HHHhCCCCCCceEEeCCeecccccchHhhcCC-CCCCEEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMI-WESLGVVKENQILHKGQRIIDQECATLADLNI-FPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I-~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i-~~~~~l~l~~~~ 808 (847)
++.|+|++++||.+||++| ++..||||++|||+|+|++| +|+.||++||| .+|++|+|.++.
T Consensus 33 ~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L-~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 33 SIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVL-HDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEE-CTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEEC-cCcCCHHHcCcCCCCCEEEEEEeC
Confidence 5666888999999999999 88899999999999999999 58899999999 999999999765
No 38
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.32 E-value=3e-12 Score=109.39 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 6788999999999999999999999999999999999999 67899999999999999998653
No 39
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.32 E-value=3.2e-12 Score=112.11 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=59.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHH---hCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWES---LGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~---~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.++|++++||.+||.+|++. .|||+++|+|+|+|+.| +|+.||++|||.+|++|+|+.+-
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEEC-CTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEEC-cCCCCHHHcCCCCCCEEEEEEcC
Confidence 367889999999999999999998 89999999999999999 57899999999999999999654
No 40
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.31 E-value=2.4e-12 Score=113.52 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=59.3
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+.+
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVL-VETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEEC-CTTCBTTTTTCCTTEEEEEECC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeEC-CCcCCHHHCCCCCCCEEEEEEe
Confidence 46788999999999999999999999999999999999999 6889999999999999999854
No 41
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.1e-12 Score=118.76 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=60.6
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++|||+++|||+|+|+.| +|+.||++|||.+|++|+|+++.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVL-QDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEEC-CTTSBTTTTTCCTTCEEEEECCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEEC-CCcCCHHHcCCCCCCEEEEEEcC
Confidence 36789999999999999999999999999999999999999 57899999999999999999776
No 42
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=2.7e-12 Score=117.13 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=59.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.+.++|++++||.+||++|++++|||+++|+|+|+|++|.||.+||++|||.+|++|+|+...
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 5778999999999999999999999999999999999999656589999999999999999654
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=5.5e-12 Score=111.72 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=59.0
Q ss_pred ceEEE-EecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNL-KVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l-~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.| +|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQL-ENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEEC-CSSSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeEC-CCCCCHHHCCCCCCCEEEEEEeC
Confidence 57899 59999999999999999999999999999999999 57899999999999999999654
No 44
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=3.8e-12 Score=111.47 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEEC-CTTCBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeEC-CCCCCHHHCCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57889999999999999999654
No 45
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=4.1e-12 Score=111.98 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=59.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L-~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEEC-CSSSBHHHHTCCTTEEEEEEECS
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEc-cCCCCHHHCCCCCCCEEEEEEec
Confidence 6788999999999999999999999999999999999999 57899999999999999999654
No 46
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=4.2e-12 Score=112.62 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=58.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBSGGGTCCTTCEEEEEC--
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 6789999999999999999999999999999999999999 57899999999999999998554
No 47
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=117.08 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=54.5
Q ss_pred eEEEEecCCccHHHHHHHHHHH-hCCCC-CCceEEeCCeecccccchHhhc--CCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWES-LGVVK-ENQILHKGQRIIDQECATLADL--NIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~-~gi~p-~~Q~L~~~G~~L~~d~~tL~~~--~i~~~~~l~l~ 805 (847)
+++|+|++++||.+||++|+++ +|+|| ++|||+|+||+| +|+.||++| ||.+|+||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L-~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLL-PDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEE-CTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEEC-CCCCCHHHHhcCCCCCCEEEeC
Confidence 6799999999999999999997 57775 999999999999 588999999 99999999985
No 48
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=5.4e-12 Score=113.54 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=59.8
Q ss_pred CceEEEEecCCccHHHHHHHHHHH---hCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWES---LGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~---~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|++++||.+||.+|++. .|||+++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEEC-CTTSBGGGGTCCSSSEEEEEESS
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEEeC
Confidence 367899999999999999999999 79999999999999999 57799999999999999999765
No 49
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.3e-12 Score=110.09 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=58.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+.+.++|++++||.+||.+|++.+|||+++|+|+|+|+.| +|++||++|||.+|++|+|+..
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKAL-ADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEC-CTTSBGGGGTCCSSBCCEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEe
Confidence 5778999999999999999999999999999999999999 5789999999999999999854
No 50
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=99.29 E-value=6.6e-11 Score=123.50 Aligned_cols=191 Identities=14% Similarity=0.220 Sum_probs=122.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCCC-----CCCCCCCccccccccccccccccccccCCCcc
Q 003108 519 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGK-----NASSIEPEILDGVIDSLKCEKHLRLLERPPDL 593 (847)
Q Consensus 519 ~~r~~~~~l~~~k~~~~~~~~~~y~Vp~~wl~~Wr~fv~~p~k-----~~~~~~P~~ldn~~~~llC~~H~~Ll~~~~~~ 593 (847)
+||+....+.. .++.+|..+|+||+.|+++|++||+.... ..+..+|+|||| +.|++ .+++....+..
T Consensus 17 ~Qr~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDN--s~L~~-~~~~~~Lk~~l- 89 (231)
T 3jyu_A 17 TQKTELGALMG---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDN--SGLFS-DPESQTLKEHL- 89 (231)
T ss_dssp HHHHHHHTTTT---CCCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCC--GGGEE-ETTTTEECSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHHhC-cCCCccccccc-
Confidence 34455554433 36788999999999999999999964321 111458999998 77777 44322112221
Q ss_pred ccccccccccCCCCCceeeeCHhHHHHHHHHhC---CCcccceEEEEeecCCCCcccccccchhcccCCCCCCCCCcccc
Q 003108 594 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEKGLSVIVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNE 670 (847)
Q Consensus 594 ~~~~g~~~q~~~~~~~~~~I~~~~W~~l~~~y~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (847)
.....+++|+++.|++|.+.|| |+++|. +.+....
T Consensus 90 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~--R~vi~~~----------------------------- 127 (231)
T 3jyu_A 90 -----------IDELDYVLVPAEAWNKLLNWYGCVEGQQPIV--RKVVEHG----------------------------- 127 (231)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCCE--EEEEEEC-----------------------------
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCceE--EEEeccC-----------------------------
Confidence 1122489999999999999999 556543 3332100
Q ss_pred ccCCCceeecCccchhhHHhHhHHHHHhhhhcccCceeEEEEecCCCCCccccccccCCCCCcccccccccccCceEEEE
Q 003108 671 IESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMFEPDRRASKRSRKTRSFVNLK 750 (847)
Q Consensus 671 ~~~~~~~~~t~p~~C~~C~~~~~~~~~~~~~~Y~~~~i~V~~v~~~~~~~~~~~~s~~~~~~~~r~s~R~r~~~~~~~l~ 750 (847)
.+ +..|. ++-=-+.+.+.. ++..+..+++.
T Consensus 128 ------~~---~~~~~----------------vEvyP~~l~l~~-------------------------~~~~~~~~~~~ 157 (231)
T 3jyu_A 128 ------LF---VKHCK----------------VEVYLLELKLCE-------------------------NSDPTNVLSCH 157 (231)
T ss_dssp ------SS---SCEEE----------------ECCSCEEEEEEE-------------------------TTEEEEEEEEE
T ss_pred ------CC---CCcce----------------EEEecceEEEEe-------------------------cCCCCceEEEE
Confidence 00 00000 000001111111 11112346778
Q ss_pred ecCCccHHHHHHHHHHHhCCCCC-CceEEe-C----CeecccccchHhhcCCCCCCEEEEEecc
Q 003108 751 VSASTSIYQLKMMIWESLGVVKE-NQILHK-G----QRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 751 v~~~~tv~~lK~~I~~~~gi~p~-~Q~L~~-~----G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+|..+||.+|+..+-..++|+++ +=||.. . ...|.+.+.||.+++|..|.+|.|-+..
T Consensus 158 ~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 158 FSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp ECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred ecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 89999999999999999999998 579954 2 2567666799999999999999998543
No 51
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.9e-12 Score=118.02 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=59.6
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
.++++.|+|++++||.+||.+|++++||||++|||+|+|+.| +|+.||++|||.+|++|+|+.+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEEC-CTTSBTTTTTCCTTEEEEECCC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEeC
Confidence 346778899999999999999999999999999999999999 5789999999999999999965
No 52
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.4e-12 Score=114.80 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 68899999999999999999653
No 53
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=3.8e-12 Score=114.62 Aligned_cols=64 Identities=22% Similarity=0.129 Sum_probs=58.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC---e---ecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---R---IIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G---~---~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..++++|++++||.+||++|++++||||++|||+|.| + +|.+|++||++|||.+|++|||++..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 3678999999999999999999999999999999987 4 35578999999999999999999765
No 54
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=6.1e-12 Score=115.56 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=60.3
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++|||+.+|||+|+|++| +|++||++|||.+|++|||+.+.
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEEC-CTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 36788999999999999999999999999999999999999 68899999999999999999765
No 55
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.27 E-value=7.5e-12 Score=106.87 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=59.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++..||||++|+|+|+|+.| +|++||++|||.+|++|+|....
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 6788999999999999999999999999999999999999 57899999999999999998653
No 56
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=114.75 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=58.8
Q ss_pred ccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEe--CCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 742 KTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHK--GQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 742 ~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~--~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
-.++++.|+|++++||.+||++|++++||||++|+|+| +|+ | +|++||++|||.+|++|||+...
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L-~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-V-EDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-C-CTTSBHHHHCCCSEEEEEECCSS
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-C-CCcCCHHHcCCCCCCEEEEEecC
Confidence 34589999999999999999999999999999999987 676 8 68899999999999999998443
No 57
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=8.1e-12 Score=109.25 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=59.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|+++.||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTGGGTCCTTCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEEC
Confidence 6789999999999999999999999999999999999999 57799999999999999999543
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=5.9e-12 Score=112.75 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=58.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCCCCceEEeCCeecccccchHhhc--CCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVKENQILHKGQRIIDQECATLADL--NIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p~~Q~L~~~G~~L~~d~~tL~~~--~i~~~~~l~l~~~~ 808 (847)
.++.|+|.+++||.+||.+|++++ ||||++|||+|+|+.| +|+.||++| ||.+|++|||+...
T Consensus 20 ~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L-~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 20 RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL-LDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEEC-CSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEEC-cCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 368888999999999999999999 9999999999999999 577899999 99999999999654
No 59
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.26 E-value=8.1e-12 Score=112.22 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++.+|||+++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L-~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 6789999999999999999999999999999999999999 57889999999999999999765
No 60
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.26 E-value=8.5e-12 Score=113.63 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=59.8
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|++..
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL-KDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEE-CTTCCTGGGTCCTTCEEEEEECC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHcCCCCCCEEEEEEcC
Confidence 35789999999999999999999999999999999999999 57899999999999999999654
No 61
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.26 E-value=4.2e-12 Score=119.30 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=57.1
Q ss_pred ceE-EEEecCCccHHHHHHHH-----HHHhCCCC--CCceEEeCCeecccccchHhhcCCCCC------CEEEEEecc
Q 003108 745 SFV-NLKVSASTSIYQLKMMI-----WESLGVVK--ENQILHKGQRIIDQECATLADLNIFPG------DKLWVQDSE 808 (847)
Q Consensus 745 ~~~-~l~v~~~~tv~~lK~~I-----~~~~gi~p--~~Q~L~~~G~~L~~d~~tL~~~~i~~~------~~l~l~~~~ 808 (847)
+.+ .++|++++||.+||++| ++++|||| ++|||||+||+| +|+.||++|+|..| +||||+...
T Consensus 27 ~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~L-eD~~TLsdy~I~~~~~~~~v~tmhlVlrl 103 (126)
T 1se9_A 27 SDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVL-ENSKTVKDYRSPVSNLAGAVTTMHVIIQA 103 (126)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEEC-CTTSBGGGGSCCTTSCTTCCEEEEEEECC
T ss_pred CEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeEC-cCCCcHHHcCCCcCCccCCcEEEEEEecc
Confidence 456 69999999999999999 67789997 899999999999 68899999999999 689999776
No 62
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=6.6e-12 Score=116.82 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=57.9
Q ss_pred CceEEEEecCCccHHHHHHHHHH------HhCC--CCCCceEEeCCeecccccchHhhcCCCCC--CEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWE------SLGV--VKENQILHKGQRIIDQECATLADLNIFPG--DKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~------~~gi--~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~--~~l~l~~~~ 808 (847)
+++++|+|++++||.+||++|++ ++|+ ||++|||||+||+| +|+.||++|||..| +||||+...
T Consensus 26 G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~L-eD~~TL~~y~I~~~~~~tlhLvlr~ 99 (116)
T 1wgh_A 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFGKTTVMHLVARE 99 (116)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEE-CSSCBTTTTTCCSSCEEEEEEEECS
T ss_pred CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCCCceEEEEEccC
Confidence 37899999999999999999999 7786 69999999999999 68899999999877 579999766
No 63
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.25 E-value=9.2e-12 Score=116.07 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=61.2
Q ss_pred ccCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 742 KTRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 742 ~~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..++++.|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|+.||++|||.+|++|||++..
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L-~D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFI-KDSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEE-CTTSBHHHHTCCSSCEEEEEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEEc
Confidence 3457889999999999999999999999999999999999999 57899999999999999999654
No 64
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=9.9e-12 Score=113.00 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
...|+|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBHHHHTCCTTCEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHCCCCCCCEEEEEEcC
Confidence 368999999999999999999999999999999999999 57899999999999999999665
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=5.3e-12 Score=113.61 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=60.1
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++.+|||+++|+|+|+|+.| +|++||++|||.+|++|||+...
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEEC-CTTSCHHHHTCCTTEEEECCBCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEC-CCcCCHHHCCCCCCCEEEEEEeC
Confidence 46889999999999999999999999999999999999999 67899999999999999998654
No 66
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.1e-11 Score=115.43 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=60.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++++||||++|+|+|+|++| +|++||++|||.+|++|+|+...
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQL-EDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTTTTTCCSSCEEEEEECC
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEEc
Confidence 6789999999999999999999999999999999999999 58899999999999999999765
No 67
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.23 E-value=6.5e-12 Score=118.46 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred CceEEEEecCCccHHHHHHHHHH------HhCCC--CCCceEEeCCeecccccchHhhcCCCCCC--EEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWE------SLGVV--KENQILHKGQRIIDQECATLADLNIFPGD--KLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~------~~gi~--p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~--~l~l~~~~ 808 (847)
+++++|+|++++||.+||++|++ ++||| |++|||||+||+| +|+.||++|||..|+ ||||+...
T Consensus 27 G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~L-eD~~TL~~y~I~~~~~~tlhlv~r~ 100 (125)
T 2gow_A 27 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFGKTTVMHLVARE 100 (125)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEE-ESSCBTGGGCCCTTSEEEEEEEECS
T ss_pred CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCCCceEEEEEecC
Confidence 47899999999999999999999 88995 9999999999999 688999999999887 78998766
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.22 E-value=1.5e-11 Score=113.96 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=59.5
Q ss_pred CceEEEEecC-CccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSA-STSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~-~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|++ ++||.+||.+|++.+||||++|+|+|+|+.| +|+.||++|||.+|++|+|++..
T Consensus 40 g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L-~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 40 GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFL-KDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBC-CTTSBTTTTTCSSSCEEEEECSS
T ss_pred CcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEEc
Confidence 3667899998 9999999999999999999999999999999 67899999999999999999654
No 69
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=1.7e-11 Score=109.39 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=58.9
Q ss_pred ceEEEEecCC-----ccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSAS-----TSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~-----~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.+.|+|+++ +||.+||.+|++..||||++|+|+|+|+.|.||++||++|||.+|++|+|+.+.
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 5678899995 999999999999999999999999999999766889999999999999999654
No 70
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.22 E-value=1.9e-11 Score=110.47 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|++..||||++|+|+|+|+.| +|++||++|||.+|++|+|....
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEeC
Confidence 5788999999999999999999999999999999999999 57899999999999999999665
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.22 E-value=1.4e-11 Score=109.86 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=59.7
Q ss_pred CceEEE-EecCCccHHHHHHHHHHHhCCCCCCceEE---eCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNL-KVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l-~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~---~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.| +|++++||.+||++|++++||||++|+|+ |+|++| +|+.||++|||.+|++|+|..+-
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L-~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPA-ENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEEC-CTTSBHHHHTCCTTEEEEEECCC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCc-CCCCCHHHcCCCCCCEEEEEecC
Confidence 467889 99999999999999999999999999999 999999 57899999999999999999554
No 72
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=1.9e-11 Score=115.63 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=59.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++|||+++|||+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL-KDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEE-STTSCGGGTTCSSSEEEEEEEC-
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEecc
Confidence 46789999999999999999999999999999999999999 57899999999999999999665
No 73
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.21 E-value=2e-11 Score=113.08 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++++||||.+|||+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEEC-CCCCcHHHCCCCCCCEEEEEEec
Confidence 6789999999999999999999999999999999999999 57789999999999999999653
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=112.30 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=59.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..+.++|+++.||.+||++|.+.++||+++|+|+|+||.| .|+.||++|||.+|.||||+..-
T Consensus 27 ~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiL-KD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 27 QEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKIL-KNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEE-CSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEc-CCcchHHHcCCCCCCEEEEEEec
Confidence 5789999999999999999999999999999999999999 57789999999999999999776
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=109.84 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred EEE-EecCCccHHHHHHHHHHH-hCCCCCCceEEeC--CeecccccchHhhcCCCCCCEEEEEe
Q 003108 747 VNL-KVSASTSIYQLKMMIWES-LGVVKENQILHKG--QRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 747 ~~l-~v~~~~tv~~lK~~I~~~-~gi~p~~Q~L~~~--G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..| +|++++||.+||++|+++ .||||++|||+|. |++| +|+.||++|||.+|++|++++
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L-~D~~tL~~y~i~~~stl~~KD 87 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSL-KDEDVLQKLPVGTTATLYFRD 87 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCC-CTTCBTTTSSCCSEEEEEECC
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCc-CCCCCHHHcCCCCCCEEEEEe
Confidence 368 999999999999999995 8999999999987 9999 688999999999999999984
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.82 E-value=1.7e-12 Score=111.45 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++.++|++++||.+||.+|++.+||||++|+|+|+|+.| +|++||++|||.+|++|+|+..
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L-~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKEL-PNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 5678999999999999999999999999999999999999 5789999999999999999854
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.19 E-value=2.7e-11 Score=119.04 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=60.3
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L-~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeec-CCCCCHHHcCCCCCCEEEEEEec
Confidence 37889999999999999999999999999999999999999 57899999999999999999654
No 78
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.19 E-value=1.2e-11 Score=111.51 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=58.3
Q ss_pred CceE-EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFV-NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~-~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++ .|+|++++||.+||++|++++||||++|+|+|.|++|. |+ ||++|||.+|++|+|+.+-
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecc
Confidence 3677 59999999999999999999999999999999999994 66 9999999999999999655
No 79
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.19 E-value=3.1e-11 Score=120.09 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|||+|+|++| +|+.||++|||.+|++|||+...
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC-CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccc-cCcCcHHHcCCCCCCEEEEEEEe
Confidence 36889999999999999999999999999999999999999 68899999999999999999765
No 80
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=1.4e-11 Score=110.91 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=58.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|.|++| +|. ||++|||.+|++|+|+.+.
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSS-BHHHHCCCTTEEEEECCSS
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcC-cHHHCCCCCCCEEEEEecc
Confidence 46889999999999999999999999999999999999999 565 9999999999999999655
No 81
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=3e-11 Score=110.90 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=58.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+.|+|++++||.+||.+|++.+|||+++|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEEC-CTTSCHHHHTCCTTEEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCcCcHHHcCCCCCCEEEEEEcC
Confidence 368999999999999999999999999999999999999 57899999999999999999765
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.17 E-value=2.4e-11 Score=114.52 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=59.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC---e---ecccccchHhhcCCCCCCEEEEEeccc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ---R---IIDQECATLADLNIFPGDKLWVQDSEI 809 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G---~---~L~~d~~tL~~~~i~~~~~l~l~~~~~ 809 (847)
..++++|++++||.+||.+|++++||||++|||+|.| + +|.+|++||++|||.+|++|||++...
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p 88 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG 88 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCC
Confidence 3578899999999999999999999999999999987 4 565789999999999999999998773
No 83
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.15 E-value=6.5e-11 Score=109.60 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|+++.|||+.+|+|+|+|+.| +|++||++|||.+|++|+|+...
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC-CSSCBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEEC-CCCCcHHHcCCCCCCEEEEEEeC
Confidence 6778999999999999999999999999999999999999 57899999999999999999653
No 84
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.15 E-value=4.3e-11 Score=120.64 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L-~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTCBGGGGTCCTTCEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEEC-CCCCCHHHCCCCCCCEEEEEEEc
Confidence 37889999999999999999999999999999999999999 57899999999999999999654
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.13 E-value=6.3e-11 Score=116.34 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=60.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE-e-CCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILH-K-GQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~-~-~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.++|++++||.+||.+|++.+||||++|+|+ | +|++| +|+.||++|||.+|++|+|+.+.
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L-~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL-QDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBC-CTTSCGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCC-CCCCCHHHcCCCCCCEEEEEccC
Confidence 47889999999999999999999999999999999 9 89999 68899999999999999999874
No 86
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.12 E-value=5.6e-12 Score=119.75 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||.+|++.+||||++|+|+|+|++| +|+.||++|||.+|++|+|++..
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEEC-CCCCchhhhccCCCCEEEEEEEc
Confidence 6788999999999999999999999999999999999999 68899999999999999999765
No 87
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=9.4e-11 Score=107.81 Aligned_cols=63 Identities=27% Similarity=0.176 Sum_probs=56.6
Q ss_pred ceEEEE--------ecCC-ccHHHHHHHHHHHh--CCCCCC-ceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLK--------VSAS-TSIYQLKMMIWESL--GVVKEN-QILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~--------v~~~-~tv~~lK~~I~~~~--gi~p~~-Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.+.|+ |+++ +||.+||.+|++++ ||||++ |+|+|+|+.| +|+.||++|||.+|++|||+...
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L-~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKL-KDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEEC-CTTCBHHHHTCCTTCEEEEEESS
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeEC-CCCCcHHHcCCCCCCEEEEEeCC
Confidence 356677 5555 99999999999999 999999 9999999999 57899999999999999999765
No 88
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.11 E-value=7.2e-11 Score=117.64 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=59.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++++.++|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|||+..
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L-~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEEC-CTTSBSGGGTCCTTCEEEECC-
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccC-CCCCcHHHhCCCCCCEEEEEEe
Confidence 37899999999999999999999999999999999999999 6889999999999999999864
No 89
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.11 E-value=9.6e-11 Score=116.72 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=60.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||.+|++++||||++|+|+|+|++| +|+.||++|||.+|++|+|+...
T Consensus 30 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L-~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 30 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccc-cccCCHhHcCCcccceeeeeecc
Confidence 47889999999999999999999999999999999999999 68899999999999999999764
No 90
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.10 E-value=6e-11 Score=109.17 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=58.0
Q ss_pred ceEEEEec-CCccHHHHHHHHHHHhCCCCCCceEEeCCe-----------ec---ccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVS-ASTSIYQLKMMIWESLGVVKENQILHKGQR-----------II---DQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~-~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~-----------~L---~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...|+|+ +++||.+||.+|++++||||++|+|++.|+ +| .+|++||++|||..|++|||+...
T Consensus 17 G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 17 GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEG 95 (107)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCC
Confidence 44478999 999999999999999999999999999998 54 479999999999999999999664
No 91
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.09 E-value=8.8e-12 Score=121.65 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.|+|++++||.+||++|++.+||||++|+|+|+|++| +|+.||++|||.+|++|+|++..
T Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEc-cccCcHHHcCCCCCCEEEEEeec
Confidence 5788999999999999999999999999999999999999 68899999999999999999765
No 92
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=1.1e-10 Score=104.71 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=55.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+.+.++|++++||.+||.+|++++ |++|||+|+|+.|.||+.||++|||.+|++|||+++.
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 568899999999999999999998 9999999999999544499999999999999999665
No 93
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.03 E-value=3.5e-10 Score=109.63 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=59.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++.++|++++||.+||.+|+++.||||++|+|+|+|+.| +|+.||++|||.+|++|+|+...
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L-~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeEC-cCcccHHHhccCCCCeeEEEeec
Confidence 6789999999999999999999999999999999999999 68899999999999999999764
No 94
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.03 E-value=4.5e-10 Score=108.27 Aligned_cols=86 Identities=20% Similarity=0.525 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhcc---------------CCCCCCCccccccCC--CCCCCCcc-
Q 003108 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLHG--KVPESKIG- 343 (847)
Q Consensus 282 ~~e~r~eVr~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~---------------~P~pIdN~~llC~Hg--~l~p~k~~- 343 (847)
.++.++.|++++.. ....++.+|.||.+||++|..+. .||||||++|++..+ .|.|.-..
T Consensus 30 ~e~Qr~~I~~l~~~--~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDNs~Ll~~~~~~~Lk~~L~e~ 107 (141)
T 1w6v_A 30 LDTQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDE 107 (141)
T ss_dssp HHHHHHHHHHHHSS--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCCTTTBCSSCTTCBCSSCCTT
T ss_pred HHHHHHHHHHHHHc--CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcCHHHhCcCccccccccccCC
Confidence 34455667777653 23346889999999999999742 589999999999873 45554222
Q ss_pred -ccccccHHHHHHHHHhcC---CCCCCCch
Q 003108 344 -SMKRISSKAWNKFFFKYN---GGPALTND 369 (847)
Q Consensus 344 -~~krIs~~aw~~L~~~yg---GgP~l~~~ 369 (847)
...-||+++|++|+++|| |||++...
T Consensus 108 ~Dy~lVp~~vW~~L~~wYG~~~ggp~I~R~ 137 (141)
T 1w6v_A 108 LDYILLPTEGWNKLVSWYTLMEGQEPIARK 137 (141)
T ss_dssp TTEEEECHHHHHHHHHHSCBCTTCCCCEEE
T ss_pred CCEEEECHHHHHHHHHHHCCCCCCCceeEe
Confidence 344599999999999999 89988654
No 95
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.01 E-value=4.3e-10 Score=108.96 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=59.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++.++|++++||.+||.+|+++.||||++|+|+|+|+.| +|+.||++|||.+|++|+|+..
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L-~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEEC-CCCCCHHHcCCCCCCEEEEEEe
Confidence 6789999999999999999999999999999999999999 5889999999999999999864
No 96
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.00 E-value=4.9e-10 Score=122.58 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=64.4
Q ss_pred EeecCCeEEEEeeeeEEecCCCceeccCceeeeceeeccccccCCC---------------------------C------
Q 003108 53 LRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEP---------------------------S------ 99 (847)
Q Consensus 53 i~~lP~vLii~LkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~---------------------------~------ 99 (847)
|.+||.+|+||+.|| +...||-.+|.||.+||+..++++. .
T Consensus 163 isrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~ 236 (374)
T 2vhf_A 163 FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCK 236 (374)
T ss_dssp ESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECH
T ss_pred eecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccc
Confidence 999999999999999 4567999999999999998775421 0
Q ss_pred ---------------C--------------------CCceeEEeEEEeeeccccCCceEEEEEEe-cCCCcEEEEcCC
Q 003108 100 ---------------Q--------------------LDLIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDE 141 (847)
Q Consensus 100 ---------------~--------------------~~~~Y~L~aVI~H~G~s~~sGHY~a~vk~-~~~~~W~~fnD~ 141 (847)
. ....|+|+|||+ +++|||+||||. +.++.||.||--
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 237 TCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp HHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred hhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence 0 026899999999 599999999996 347899999853
No 97
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.98 E-value=3.7e-10 Score=99.60 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=56.2
Q ss_pred eEEEE-ecCCccHHHHHHHHHHHhCCCCCCceEEeCC--eecc--cccchHhhcCCCCCCEEEEEecc
Q 003108 746 FVNLK-VSASTSIYQLKMMIWESLGVVKENQILHKGQ--RIID--QECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~-v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G--~~L~--~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
...++ |.+++||.+||++|+++.||||++|+|+|++ |+|. +|++||++|||.+|++|+|+.++
T Consensus 11 ~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 11 THLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 33467 9999999999999999999999999999984 8883 37899999999999999999765
No 98
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.93 E-value=1.2e-09 Score=117.84 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=58.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+++.|+|++++||.+||.+|++++||||++|||+|+|++| +|++||++|||.+|++|+|+..
T Consensus 244 k~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L-~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 244 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBTGGGTCCTTCEEEEEC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeec-CCCCCHHHcCCCCCCEEEEEEe
Confidence 6789999999999999999999999999999999999999 5889999999999999999864
No 99
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.92 E-value=1.2e-10 Score=116.83 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+++++|+|++++||.+||++|++.+||||++|+|+|+|++| +|+.||+ +||||||++..
T Consensus 10 GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~L-eD~~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 10 GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIA-PNTELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeEC-CCCCccc-----CCCEEEEEEec
Confidence 36889999999999999999999999999999999999999 5789998 99999999765
No 100
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=98.91 E-value=1.8e-09 Score=111.54 Aligned_cols=85 Identities=20% Similarity=0.525 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhcc---------------CCCCCCCccccccC--CCCCCCCcc-
Q 003108 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLH--GKVPESKIG- 343 (847)
Q Consensus 282 ~~e~r~eVr~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~---------------~P~pIdN~~llC~H--g~l~p~k~~- 343 (847)
+++.++.|.+++.. ....++.+|.||+.||++|..+. .||||||++|++.| +.|.|.-..
T Consensus 6 l~~Q~~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdNs~L~~~~~~~~Lk~~l~e~ 83 (217)
T 4a3p_A 6 LDTQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDE 83 (217)
T ss_dssp HHHHHHHHHHHTTC--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCCGGGBCCC---CBCSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHhhCCCCCcccCcCcccC
Confidence 45566778888764 33447899999999999998653 68999999999986 456665322
Q ss_pred -ccccccHHHHHHHHHhcC---CCCCCCc
Q 003108 344 -SMKRISSKAWNKFFFKYN---GGPALTN 368 (847)
Q Consensus 344 -~~krIs~~aw~~L~~~yg---GgP~l~~ 368 (847)
.+..||+++|++|+++|| |||++..
T Consensus 84 ~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R 112 (217)
T 4a3p_A 84 LDYILLPTEGWNKLVSWYTLMEGQEPIAR 112 (217)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCEE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCCcce
Confidence 456699999999999999 9999864
No 101
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=2.9e-09 Score=95.50 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=59.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.++|.+++++..|+.++.++.||+|.+|||+|+|++| +++.|+++|++.+||+|+|+...
T Consensus 17 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 17 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 46899999999999999999999999999999999999999 57789999999999999999543
No 102
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=3.8e-09 Score=95.22 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=57.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC-------eecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ-------RIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G-------~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+..+.+.+..++||.+||.+|+..+|+||..|+|++.+ ..|.+|++||+.|||.+|++|||+++.
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 35677889999999999999999999999999999873 337899999999999999999999654
No 103
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.81 E-value=2.7e-09 Score=116.37 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=58.1
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE---eCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~---~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.|+|++++||.+||++|++++||||++|+|+ |+|++| .|+.||++|||.+|++|+|+-+.
T Consensus 14 g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l-~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTA-ADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBC-CTTSBTTSSCCC--CEEEEECCC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCccc-CccccHHHcCCCCCCEEEEEccc
Confidence 47889999999999999999999999999999999 999999 57889999999999999999665
No 104
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.80 E-value=7.7e-09 Score=88.10 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=57.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
++.+.++|.+++++..|+.++.++.||++.+|||+|+|++| +++.|.++|++.+||+|++.
T Consensus 11 g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 11 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTTTCCTTEEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999999999999999 56789999999999999986
No 105
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=98.79 E-value=5.6e-09 Score=108.93 Aligned_cols=86 Identities=24% Similarity=0.540 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhcc---------------CCCCCCCccccccC--CCCCCCCcc-
Q 003108 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLH--GKVPESKIG- 343 (847)
Q Consensus 282 ~~e~r~eVr~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~---------------~P~pIdN~~llC~H--g~l~p~k~~- 343 (847)
+++.|+.|.+++.. ....++.+|.||+.|+++|..+. .||||||++|++.+ +.|.|....
T Consensus 15 l~~Qr~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDNs~L~~~~~~~~Lk~~l~e~ 92 (231)
T 3jyu_A 15 VETQKTELGALMGT--TLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDE 92 (231)
T ss_dssp HHHHHHHHHTTTTC--CCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCCGGGEEETTTTEECSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHHhCcCCCcccccccccC
Confidence 45556677777764 33447889999999999998653 48999999999976 345554322
Q ss_pred -ccccccHHHHHHHHHhcC---CCCCCCch
Q 003108 344 -SMKRISSKAWNKFFFKYN---GGPALTND 369 (847)
Q Consensus 344 -~~krIs~~aw~~L~~~yg---GgP~l~~~ 369 (847)
....||+.+|++|+++|| |||++...
T Consensus 93 ~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R~ 122 (231)
T 3jyu_A 93 LDYVLVPAEAWNKLLNWYGCVEGQQPIVRK 122 (231)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCEEE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCceEEE
Confidence 345599999999999999 89998643
No 106
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=1.8e-08 Score=89.81 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=59.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| +++.|.++|++.+||+|+|+...
T Consensus 15 g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 15 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 36899999999999999999999999999999999999999 56789999999999999999554
No 107
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.72 E-value=3e-08 Score=86.02 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=56.5
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+.++|.+++++..|+.++.++.||++.+|||+|+|++| .++.|.++|++..||+|++.
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKL-SGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEEC-CSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEe
Confidence 789999999999999999999999999999999999999 57789999999999999985
No 108
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.72 E-value=6.6e-09 Score=115.02 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=57.0
Q ss_pred CceEEEEecCCccHHHHHHHHHH---HhCCCCCCceEEeCCeecccccchHhhcCCCCCCEE-EEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWE---SLGVVKENQILHKGQRIIDQECATLADLNIFPGDKL-WVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~---~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l-~l~~~ 807 (847)
++++.|+|++++||.+||.+|++ +.|||+++|||+|+||.| +|+.||++|||.+|++| +|+..
T Consensus 17 Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L-~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 17 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEE-CSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeec-CCcCCHHHcCCCCCCEEEEEEec
Confidence 36789999999999999999999 577999999999999999 57899999999999999 66543
No 109
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=98.70 E-value=6.1e-08 Score=93.35 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=58.2
Q ss_pred CCCCCCeeEEEchhhHHHHHHhcCCCCCCC-----CCCCCccccccccccccccccccccCCCccccccccccccCCCCC
Q 003108 534 PLSLDCKYYLLPSTWLTKWRNYISPSGKNA-----SSIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATD 608 (847)
Q Consensus 534 ~~~~~~~~y~Vp~~wl~~Wr~fv~~p~k~~-----~~~~P~~ldn~~~~llC~~H~~Ll~~~~~~~~~~g~~~q~~~~~~ 608 (847)
++.+|..+|+||+.|+++|++||....... +..+|++||| +.|++ ..++....+.. -...
T Consensus 44 ~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDN--s~Ll~-~~~~~~Lk~~L------------~e~~ 108 (141)
T 1w6v_A 44 SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL------------IDEL 108 (141)
T ss_dssp CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCC--TTTBC-SSCTTCBCSSC------------CTTT
T ss_pred CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcC--HHHhC-cCccccccccc------------cCCC
Confidence 567899999999999999999996433110 0358999998 77877 44321111111 1223
Q ss_pred ceeeeCHhHHHHHHHHhC---CCcc
Q 003108 609 GLTIVTENDWKWFCEEWG---GIKE 630 (847)
Q Consensus 609 ~~~~I~~~~W~~l~~~y~---~~~~ 630 (847)
.+++|+++.|++|.+.|| ++++
T Consensus 109 Dy~lVp~~vW~~L~~wYG~~~ggp~ 133 (141)
T 1w6v_A 109 DYILLPTEGWNKLVSWYTLMEGQEP 133 (141)
T ss_dssp TEEEECHHHHHHHHHHSCBCTTCCC
T ss_pred CEEEECHHHHHHHHHHHCCCCCCCc
Confidence 589999999999999999 5665
No 110
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.64 E-value=4.6e-08 Score=87.52 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=58.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
+.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|+++..
T Consensus 28 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 28 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEEC
T ss_pred CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHcCCCCCCEEEEEee
Confidence 6789999999999999999999999999999999999999 5778999999999999999854
No 111
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.60 E-value=5.1e-08 Score=88.99 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=59.4
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| .++.|+++|++..||+|+|+...
T Consensus 34 g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 34 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTTTCCTTEEEEECCCC
T ss_pred CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEec
Confidence 36789999999999999999999999999999999999999 57789999999999999998543
No 112
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.58 E-value=5.6e-08 Score=89.49 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=59.4
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|.+++++..|+..+.++.||++.+|||+|+|++| +++.|+++|++..||+|+|+...
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L-~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI-DETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC-CSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEEcc
Confidence 36789999999999999999999999999999999999999 56789999999999999999543
No 113
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.56 E-value=7.9e-08 Score=87.88 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=59.7
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
.++.+.++|..++++..|+.++.++.||++.+|||+|+|++| +++.|.++|++..||+|+|+..
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHcCCCCCCEEEEEee
Confidence 347899999999999999999999999999999999999999 5778999999999999999854
No 114
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=6.5e-06 Score=76.03 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=58.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++.+.++|..++++..|+....++.|+++.++||+|+|++| +++.|.+++++.+||+|.+...
T Consensus 50 g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 50 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEEC
T ss_pred CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEee
Confidence 36789999999999999999999999999999999999999 5678999999999999999854
No 115
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.3e-06 Score=83.39 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=61.2
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.++.+.++|..++++..|+....++.|+++.++||+|+|++| .++.|.+++++.+||+|++....
T Consensus 37 ~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI-~~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 37 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEEC-CTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEc-CCCCCHHHcCCCCCCEEEEEecc
Confidence 457899999999999999999999999999999999999999 57789999999999999999766
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.02 E-value=4.5e-06 Score=74.20 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=38.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIID 785 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~ 785 (847)
..+.+.|.+++||..+|++|++++||||.+|+|+|+|++|.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 56789999999999999999999999999999999999984
No 117
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.87 E-value=8.2e-06 Score=70.77 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=52.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCee---c-ccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRI---I-DQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~---L-~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+...|+|++++||.+|+.+|.+.++|+++.|.|.++-.+ | ...++||+++||..||+|+|.
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 778889999999999999999999999999888766554 3 237889999999999999986
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.5e-05 Score=79.25 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=61.2
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEeccc
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEI 809 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~~ 809 (847)
.++.+.++|..++++..|+....++.||++.++||+|+|++| +++.|.+++++.+||+|++.....
T Consensus 65 dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI-~~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 65 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEI-QADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEEC-CSSCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeec-CCCCCHHHcCCCCCCEEEEEEecc
Confidence 447899999999999999999999999999999999999999 577899999999999999997663
No 119
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.41 E-value=2.2e-05 Score=79.05 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred cCceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 743 TRSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 743 ~~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.++.+.++|..++++..|+....++.|+++.++|++|+|++| +++.|.+++++.+||+|++....
T Consensus 29 dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI-~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 29 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEec-CCCCCHHHcCCCCCCEEEEEecc
Confidence 347889999999999999999999999999999999999999 57789999999999999998554
No 120
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.38 E-value=0.00063 Score=57.72 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=57.0
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCC-CceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKE-NQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~-~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..+.+.|.+++||.+|=..--++.||++. .-+|.|.|..| +..+|+++|++..||.|.+.+
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRL-dp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWL-DPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEEC-CTTSBGGGSSCCTTCEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCccc-CccCChhhhCCcCCceeeeee
Confidence 67889999999999999999999999999 88999999999 677899999999999999885
No 121
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.95 E-value=0.0013 Score=67.19 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=59.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++.+.++|..++++..|+.+..++.|+++.++||+|.|+.+ .++.|-+++++.+||+|.+....
T Consensus 30 ~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i-~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEEC-CTTCCTTTTTCCTTEEEEEECSC
T ss_pred CCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEec-cCCCChHHhhhcccccchhhccc
Confidence 46889999999999999999999999999999999999999 57789999999999999998665
No 122
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.87 E-value=0.00092 Score=62.76 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=53.4
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCC-------------------------------------CceEEe--CCeecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKE-------------------------------------NQILHK--GQRIID 785 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~-------------------------------------~Q~L~~--~G~~L~ 785 (847)
...++.|+.+.||.++++.|-.++||++. .|+|+. ++..|
T Consensus 22 ~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WL- 100 (128)
T 2kc2_A 22 TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWL- 100 (128)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEE-
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcc-
Confidence 67889999999999999999999999966 577765 34778
Q ss_pred cccchHhhcCCCCCCEEEEE
Q 003108 786 QECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 786 ~d~~tL~~~~i~~~~~l~l~ 805 (847)
|++.||.+.||.+++||.|+
T Consensus 101 D~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 101 DHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSCHHHHTCCTTSEEEEE
T ss_pred cCCCcHHHcCCCCCCEEEEE
Confidence 79999999999999999997
No 123
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.67 E-value=0.0041 Score=55.68 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=55.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
..+.+.|..++++..|...-.++.|+++..-+++|.|..| ..+.|.+++++..||+|.+.
T Consensus 37 ~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI-~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 37 QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKL-SGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEEC-CSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEc-CCCCCHHHcCCCCCCEEEEe
Confidence 3688999999999999999999999999999999999999 46689999999999999875
No 124
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.41 E-value=0.00052 Score=75.16 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
++++.++|..++++..|+....++.|+++.++|+.|+|++| .++.|.+++++.+||+|++....
T Consensus 30 g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI-~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeEC-CCCCChHHcCCCccchhhhhhcc
Confidence 36789999999999999999999999999999999999999 46789999999999999998664
No 125
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.92 E-value=0.036 Score=49.06 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=58.8
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
++.+-+.|..++.+..|....-++.|+++.+-|+.|.|..+ .++.|-+++|+..||+|.+.+.
T Consensus 30 g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 30 ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHHTCCSSCEEEEEEC
T ss_pred CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHcCCCCCCEEEEEEe
Confidence 58999999999999999999999999999999999999999 5778999999999999998753
No 126
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.83 E-value=0.0015 Score=73.10 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEeccc
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEI 809 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~~ 809 (847)
++++.++|..++++..|+....++.|+++.++++.|+|++| .++.|-+++++..||+|.+.....
T Consensus 39 ~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i-~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 39 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHcCCCCCCEeeeeeccc
Confidence 46888999999999999999999999999999999999999 577899999999999999987663
No 127
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.64 E-value=0.022 Score=49.38 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=51.8
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecc--cccchHhhcCCCCCCEEEEEec
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~--~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
.+.-...+++||.+|..-|.. .|.++....|. |-.|.|. |.++||+++|+.|.++|.|...
T Consensus 19 r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 19 FLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp EEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 456678899999999999998 78888888997 4568885 5689999999999999999743
No 128
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.97 E-value=0.065 Score=47.00 Aligned_cols=63 Identities=14% Similarity=0.004 Sum_probs=57.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
+...++|++++|+.+|=+.--+++|+.+++=.|.|++|.| |=+..+.-.||-.|+.|.|+...
T Consensus 20 rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~l-DLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 20 RRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVL-DLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEE-SSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEec-cccceeEecCCCCCCEEEEEEcc
Confidence 3457899999999999999999999999988999999999 67899999999999999999554
No 129
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=94.64 E-value=0.042 Score=47.44 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=50.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCC----Cc-eEEeCCeecccccchHhhcCCCCCCEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKE----NQ-ILHKGQRIIDQECATLADLNIFPGDKLWV 804 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~----~Q-~L~~~G~~L~~d~~tL~~~~i~~~~~l~l 804 (847)
+++.|.|+...||+.|+.-+++.++++.. .| |+.-.|.-| .+.++|++++|..||.|-+
T Consensus 17 ~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L-~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 17 SVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVF-SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEE-ETTSBTGGGTCCTTCEEEE
T ss_pred ceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEE-cCCCEEeeCCcCCCCEEEE
Confidence 78999999999999999999999999862 23 556666777 5778999999999999864
No 130
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=92.11 E-value=0.29 Score=44.54 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=53.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecc--cccchHhhcCCCCCCEEEEEec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID--QECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~--~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
..+.-...+++||.+|..-|....+.+...-.|+ |--|.|. |.++||+++|+.|..+|.|+..
T Consensus 24 ~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 24 SSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 4567788899999999999999988887777886 4568886 4589999999999999999943
No 131
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=91.20 E-value=0.35 Score=44.02 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=42.7
Q ss_pred eEEEEecCCccHHHHHHHHHHHh--CCCCC------CceEEe----CCeeccccc------------chHhhcCCCCCCE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESL--GVVKE------NQILHK----GQRIIDQEC------------ATLADLNIFPGDK 801 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~--gi~p~------~Q~L~~----~G~~L~~d~------------~tL~~~~i~~~~~ 801 (847)
.+.++|-..|||.|+|++|.+.+ |+|-. +..|-+ .|+.|.|.+ -||++|+|.+|++
T Consensus 25 ~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgat 104 (111)
T 4e71_A 25 AIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGAT 104 (111)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred ceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCE
Confidence 47889999999999999999885 55543 334533 345564432 3899999999999
Q ss_pred EEEE
Q 003108 802 LWVQ 805 (847)
Q Consensus 802 l~l~ 805 (847)
|-|+
T Consensus 105 l~l~ 108 (111)
T 4e71_A 105 LILS 108 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 132
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=90.40 E-value=0.61 Score=43.95 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=44.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCCCC------ceEEe----CCee-ccccc------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVKEN------QILHK----GQRI-IDQEC------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p~~------Q~L~~----~G~~-L~~d~------------~tL~~~~i~~~ 799 (847)
..+.++|=.-|||-|+|++|.+.+ |+|-.+ --|-. +|+. |.|.+ -||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457899999999999999999996 554322 23322 2332 53322 18999999999
Q ss_pred CEEEEE
Q 003108 800 DKLWVQ 805 (847)
Q Consensus 800 ~~l~l~ 805 (847)
.+|-|+
T Consensus 121 a~l~l~ 126 (138)
T 2r2o_A 121 ATVALV 126 (138)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999998
No 133
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.39 E-value=0.39 Score=44.75 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeec--ccccchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRII--DQECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L--~~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..+.-...+++||.+|..-|... |.++..-.|+ |-.|.| .|.++||+++|+.|..+|.|+..+
T Consensus 54 ~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 54 KREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 35666788999999999999887 8888888887 557889 556899999999999999998443
No 134
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.26 E-value=0.95 Score=41.03 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=50.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEE--eCCeecc-cccchHhhcCCCCCCEEEEEecc
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILH--KGQRIID-QECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~--~~G~~L~-~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.+.-....++||.+|..-|... +..+..-.|+ |-.|.|. |.++||+++||.+..+|.|...+
T Consensus 35 r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 35 VLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 4555777899999999999954 6677777785 5578886 56899999999999999998544
No 135
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.75 E-value=1.1 Score=41.28 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=44.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCCC------CceEEe-CC---e-eccccc------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVKE------NQILHK-GQ---R-IIDQEC------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p~------~Q~L~~-~G---~-~L~~d~------------~tL~~~~i~~~ 799 (847)
..+.++|-.-|||.|+|++|.+.+ |+|-. +..|-+ .| + .|.|.+ -||++|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 457889999999999999999885 66543 334432 23 3 243322 38999999999
Q ss_pred CEEEEE
Q 003108 800 DKLWVQ 805 (847)
Q Consensus 800 ~~l~l~ 805 (847)
++|.|+
T Consensus 107 atl~l~ 112 (117)
T 4e74_A 107 SVVALV 112 (117)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999987
No 136
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.21 E-value=1.4 Score=40.90 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=45.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCC------CCceEEe-C---Cee-ccccc------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVK------ENQILHK-G---QRI-IDQEC------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p------~~Q~L~~-~---G~~-L~~d~------------~tL~~~~i~~~ 799 (847)
..+.++|-..|||.|+|++|.+.+ |+|- ++..|-+ . |+. |.|.+ -||++|+|.+|
T Consensus 17 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 17 DSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred CceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC
Confidence 348889999999999999999985 5554 3445533 2 232 43322 38999999999
Q ss_pred CEEEEEec
Q 003108 800 DKLWVQDS 807 (847)
Q Consensus 800 ~~l~l~~~ 807 (847)
+||.|.-.
T Consensus 97 atv~l~~~ 104 (127)
T 3h6n_A 97 ASLAMSLI 104 (127)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEc
Confidence 99999843
No 137
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.52 E-value=1.2 Score=41.21 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=42.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh----CCCCC----CceEEe-C---Ceeccccc-------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL----GVVKE----NQILHK-G---QRIIDQEC-------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~----gi~p~----~Q~L~~-~---G~~L~~d~-------------~tL~~~~i~~~ 799 (847)
..+.++|-..|||.|+|++|.+.. |+|-. +..|-+ . |+.|.|++ -||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 467889999999999999998764 77653 223321 1 12222110 37899999999
Q ss_pred CEEEEE
Q 003108 800 DKLWVQ 805 (847)
Q Consensus 800 ~~l~l~ 805 (847)
++|.|.
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 138
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=84.89 E-value=1.3 Score=41.28 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-CCCCCCceEE--eCCeecccccchHhhcCCCCCCEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL-GVVKENQILH--KGQRIIDQECATLADLNIFPGDKL 802 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~-gi~p~~Q~L~--~~G~~L~~d~~tL~~~~i~~~~~l 802 (847)
..+.-.+..++||.+|..-|.... |+......|+ |-.|.|+|+++||+++|+.+..+|
T Consensus 63 ~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 63 GRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp TEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 345667889999999999999974 4666677776 557999877899999999994443
No 139
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=79.54 E-value=1.7 Score=40.74 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=30.4
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEEe
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILHK 779 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~ 779 (847)
.++.|-.++|+.+||.+|.+.+|||+++|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999964
No 140
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=74.13 E-value=5.5 Score=36.96 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=42.9
Q ss_pred EEEec----CCccHHHHHHHHHHHhCCCC-------CCceEEeCCeecc-cccchHhhcCCCCCCEEEEEecc
Q 003108 748 NLKVS----ASTSIYQLKMMIWESLGVVK-------ENQILHKGQRIID-QECATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 748 ~l~v~----~~~tv~~lK~~I~~~~gi~p-------~~Q~L~~~G~~L~-~d~~tL~~~~i~~~~~l~l~~~~ 808 (847)
.|.|+ +..|+.+|=..|.+++|..- .+|+|+|.= -.+ +-.+||.++||..|+.|.+.+.+
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEccc
Confidence 34555 35799998888999999763 135555433 122 22789999999999999999664
No 141
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=66.57 E-value=7.8 Score=42.33 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=49.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhC----CCCCCceEEe------CCeecccccchHhhcCCCCCCEEEEE
Q 003108 744 RSFVNLKVSASTSIYQLKMMIWESLG----VVKENQILHK------GQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 744 ~~~~~l~v~~~~tv~~lK~~I~~~~g----i~p~~Q~L~~------~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+-+.++.+++++||+++-.+|-|+.. .++.+=-|+- .|+-| ++.+||+.|++.+|+.|...
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeecc
Confidence 34568899999999999999988874 3466656766 46778 57789999999999988876
No 142
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=63.96 E-value=10 Score=43.96 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=44.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCCCC------ceEEe----CCe-eccccc------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVKEN------QILHK----GQR-IIDQEC------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p~~------Q~L~~----~G~-~L~~d~------------~tL~~~~i~~~ 799 (847)
..+.++|-..|||.|+|++|.+.. |+|-.+ ..|-+ .|+ .|.|.+ -||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457889999999999999999774 665433 23322 222 243322 49999999999
Q ss_pred CEEEEEe
Q 003108 800 DKLWVQD 806 (847)
Q Consensus 800 ~~l~l~~ 806 (847)
++|-|+-
T Consensus 354 a~v~L~p 360 (644)
T 3hm6_X 354 ATVALVP 360 (644)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 9999974
No 143
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=60.46 E-value=14 Score=42.88 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=44.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh--CCCC------CCceEEe----CCe-eccccc------------chHhhcCCCCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESL--GVVK------ENQILHK----GQR-IIDQEC------------ATLADLNIFPG 799 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~--gi~p------~~Q~L~~----~G~-~L~~d~------------~tL~~~~i~~~ 799 (847)
..+.++|-..|||.|+|++|.+.. |+|- ++..|-+ +|+ .|.|++ -||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 457889999999999999999985 5543 3334422 222 233221 38999999999
Q ss_pred CEEEEEecc
Q 003108 800 DKLWVQDSE 808 (847)
Q Consensus 800 ~~l~l~~~~ 808 (847)
.+|-|+-..
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999997443
No 144
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=59.44 E-value=10 Score=32.62 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=34.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ 781 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G 781 (847)
-+|+|.|.+..+..+|..+|.++++++++.-.|.|.-
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 6899999999999999999999999999888998754
No 145
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=49.40 E-value=51 Score=26.83 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=38.7
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+..+++....||.+|... +|+++..-.+..||..+..|. -+.+||.|.+.
T Consensus 15 ~~~~~~~~~~tv~~Ll~~----l~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii 64 (70)
T 1ryj_A 15 KKILESGAPRRIKDVLGE----LEIPIETVVVKKNGQIVIDEE------EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEESSCCBHHHHHHH----TTCCTTTEEEEETTEECCTTS------BCCTTCEEEEE
T ss_pred ceeEECCCCCcHHHHHHH----hCCCCCCEEEEECCEECCCcc------cCCCCCEEEEE
Confidence 345678888999988877 588877667788998884332 68899999886
No 146
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=44.98 E-value=8.7 Score=34.14 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=43.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhC-------CCCC----CceEEeCC-eeccc-----ccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLG-------VVKE----NQILHKGQ-RIIDQ-----ECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~g-------i~p~----~Q~L~~~G-~~L~~-----d~~tL~~~~i~~~~~l~l~ 805 (847)
.+.|+|+++.|+.+|=..+.+.-- |... ...|++.+ .+|.+ =+++|.++|+.+|+.|+|-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 457899999999999999888322 2222 56777766 34522 1567999999999999985
No 147
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=44.94 E-value=24 Score=38.33 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=35.5
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeec
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRII 784 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L 784 (847)
....+.+.+.+|+..++++|.+..||++++|.|.+.|..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 4556788999999999999999999999999999999444
No 148
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=44.69 E-value=15 Score=42.23 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEE
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILH 778 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~ 778 (847)
..+.|-.++|+.+||.+|.+.+|||+++|||.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 36789999999999999999999999999995
No 149
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=43.51 E-value=32 Score=28.61 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=38.6
Q ss_pred eEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 746 FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
...+++....||.+|=. .+|+|+..=...-||+.+..|. +.+||+|.+.
T Consensus 12 ~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv 60 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVL 60 (74)
T ss_dssp EEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEEC
T ss_pred ceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEE
Confidence 44678999999986554 4999999888899999885554 3469988876
No 150
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=39.52 E-value=1e+02 Score=26.37 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=47.9
Q ss_pred eEEEEecCCccHHHHHHHHHHH-hCCCC--C--CceEEeCCee--cccccchHhhcCCCCCCEEEEEe
Q 003108 746 FVNLKVSASTSIYQLKMMIWES-LGVVK--E--NQILHKGQRI--IDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~-~gi~p--~--~Q~L~~~G~~--L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
..-+.|+..+|+.++-+++... .|.-. . --+...+|.. | ..+.|+++.||.|=+.|.+.-
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~-Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELF-PRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBC-CTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccC-CCCCEeeccCCCcceEEEEEE
Confidence 4567899999999999998765 45432 2 3467889977 7 788999999999999998863
No 151
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=37.18 E-value=68 Score=27.57 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=48.6
Q ss_pred EEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEEe
Q 003108 749 LKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 749 l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
-.++=..++..||..++.++||.-..=.+...+.+| +.+++|-+-+|+-+-++.+-+
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L-~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQL-DPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEEC-CTTSBTTTSSCCCCSEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeecccc-CCCccHHHhhcccccEEEEEE
Confidence 345556789999999999999999999999999998 688999999999888765543
No 152
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.04 E-value=26 Score=40.30 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=51.4
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCC------eecccccchHhhc--CCCCCCEEEEEecc
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQ------RIIDQECATLADL--NIFPGDKLWVQDSE 808 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G------~~L~~d~~tL~~~--~i~~~~~l~l~~~~ 808 (847)
.+-|+.+++|.+|-..|-+..|+|++...+.|.- .+|.+-..|+.++ +|..||+|..+...
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDD 218 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecC
Confidence 5678999999999999999999999988777763 3453357799999 99999999998654
No 153
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=36.61 E-value=74 Score=27.37 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=41.6
Q ss_pred ceEEEEecCC-ccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSAS-TSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~-~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+-..+++... .||.+|... +|+++..-.+..||..+. ....++.-|.+||.|.+.
T Consensus 26 NGe~~el~~~~~Tv~dLL~~----L~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLAS----YQLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIV 81 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHH----TTCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEE
T ss_pred CCEEEECCCCCCcHHHHHHH----hCCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEE
Confidence 4446677777 899988776 588877667788998873 234566779999999887
No 154
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=35.90 E-value=33 Score=40.68 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=38.9
Q ss_pred EEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhc
Q 003108 747 VNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADL 794 (847)
Q Consensus 747 ~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~ 794 (847)
..+.+++++|+.+|+..|++..||++++|.|++.+....+......++
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 367999999999999999999999999999988764443455455554
No 155
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=34.14 E-value=78 Score=26.15 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=40.6
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+++ ...||.+|-.. +|+++..--+..||..+. ....++.-+.+||.|.+.
T Consensus 9 ~~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp--r~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 9 QREV-QSASVAALMTE----LDCTGGHFAVALNYDVVP--RGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEEC--HHHHTTCBCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEE
Confidence 4566 66899877665 899988778889998883 346777889999999987
No 156
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.68 E-value=44 Score=28.81 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEE---eCCeecccccchHhhcCCCCCCEEEEEec
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILH---KGQRIIDQECATLADLNIFPGDKLWVQDS 807 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~---~~G~~L~~d~~tL~~~~i~~~~~l~l~~~ 807 (847)
.+.||+..++.+|=-.|=++-.+.|+.=.|. ..+..| |=+++|.+|||.. |.+++.
T Consensus 24 VvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~L-dLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 24 IVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPL-DLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBC-CTTSCHHHHTCSE---EEEEEC
T ss_pred EEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCccc-chhcchhhhhhhh---hheecc
Confidence 5689999999999999999999999998885 455677 6789999999998 666643
No 157
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=27.50 E-value=98 Score=24.64 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=39.0
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+++....||.+|... +++++..-.+..||..+. .....+.-+.+||.|.+.
T Consensus 9 ~~~~~~~~tv~~ll~~----l~~~~~~v~vavN~~~v~--~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQ----LDQRQAGAALAINQQIVP--REQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHH----HTCCCSSEEEEETTEEEC--HHHHTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCCEEEEECCEECC--chhcCCcCCCCCCEEEEE
Confidence 4567778899988877 478876667788998773 224556678999998876
No 158
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=27.41 E-value=1.9e+02 Score=24.66 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=45.5
Q ss_pred eEEEEecCCccHHHHHHHHHHH-hCCC--CC---CceEEeCC--eecccccchHhhcCCCCCCEEEEEe
Q 003108 746 FVNLKVSASTSIYQLKMMIWES-LGVV--KE---NQILHKGQ--RIIDQECATLADLNIFPGDKLWVQD 806 (847)
Q Consensus 746 ~~~l~v~~~~tv~~lK~~I~~~-~gi~--p~---~Q~L~~~G--~~L~~d~~tL~~~~i~~~~~l~l~~ 806 (847)
.+-+-|+..+|+.++=+++... .|.- |. --+..++| ..| ..+.|+++.||.|=+.|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~-pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLF-PRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEE-CTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCC-CCCCEeeccCCCCceEEEEEE
Confidence 4567899999999999988764 3432 22 23556777 667 688999999999999998763
No 159
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=26.63 E-value=78 Score=26.54 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=40.8
Q ss_pred EEEec--CCccHHHHHHHHHHHhCCC-CCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 748 NLKVS--ASTSIYQLKMMIWESLGVV-KENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 748 ~l~v~--~~~tv~~lK~~I~~~~gi~-p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+++. ...||.+|-.. +|++ +.---+-.||..+. ....++.-+.+||.|.++
T Consensus 9 ~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEE
Confidence 45676 77999987665 7898 77667889998883 346778889999999887
No 160
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=26.31 E-value=1.6e+02 Score=24.60 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=39.1
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC-CC----C------CCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG-VV----K------ENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g-i~----p------~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
++..+++....||.+|...+.+... +. . ..-++..||+... . +.-+.+||.|.+-
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEE
Confidence 5678888888999999999988752 10 0 1135677888773 2 3458899998876
No 161
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=26.03 E-value=44 Score=27.76 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+...+++....||.+|..+ +|+++..-.+..||+.+..| .-|.+||.|.+.
T Consensus 21 n~~~~~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~------~~L~dGD~V~i~ 71 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED------DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS------SCCCSSCCCBCS
T ss_pred CCEEEECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC------CCcCCCCEEEEE
Confidence 4455677788999988776 57887766788899888432 467888877654
No 162
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=22.59 E-value=68 Score=32.28 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=26.8
Q ss_pred EEEeeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003108 109 AVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (847)
Q Consensus 109 aVI~H~G~s~~sGHY~a~vk~~~~~~W~~fnD~~Vt~v~ 147 (847)
+-++-.|+. ++|||+.+... .+ +.+|-..+.++.
T Consensus 162 ~~~vF~G~~-~~GHY~~~~~~--~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGTT-QNGHYMVDDIE--HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESCT-TTCEEEEEETT--TT--EEEETTEEECCC
T ss_pred eEEEEEcCC-CCceEEEEecc--cc--eEEeCCceeEcc
Confidence 445559995 99999999653 33 899999999986
No 163
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=22.57 E-value=1.3e+02 Score=23.71 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=37.3
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
.+++ ...||.+|... +++++..-.+..||+.+. ...-.+.-+.+||.|.+.
T Consensus 8 ~~~~-~~~tv~~ll~~----l~~~~~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEE----MGVELKGVAVLLNEEAFL--GLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EECC-TTCCHHHHHHH----HTBCGGGEEEEETTEEEE--GGGCCCCCCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECC--ccccCCcCCCCCCEEEEE
Confidence 4566 67899988777 477776667788998773 223445678999999886
No 164
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=22.20 E-value=1.1e+02 Score=28.52 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=37.3
Q ss_pred EEEecCCccHHHHHHHHHHHhCCCCCCceEE-eCCeecccccchHhhc
Q 003108 748 NLKVSASTSIYQLKMMIWESLGVVKENQILH-KGQRIIDQECATLADL 794 (847)
Q Consensus 748 ~l~v~~~~tv~~lK~~I~~~~gi~p~~Q~L~-~~G~~L~~d~~tL~~~ 794 (847)
.+.|.+++||.++..-|..+.+++|.+...+ |.+..+-.-++||+++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 4679999999999999999999999877655 6665564556677664
No 165
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=21.20 E-value=1.7e+02 Score=26.74 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=50.1
Q ss_pred ceEEEEecCCccHHHHHHHHH-HHhCCCCCCc-------eEEeCCeecccc-cchHhhcCCCCCCEEEEEecc
Q 003108 745 SFVNLKVSASTSIYQLKMMIW-ESLGVVKENQ-------ILHKGQRIIDQE-CATLADLNIFPGDKLWVQDSE 808 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~-~~~gi~p~~Q-------~L~~~G~~L~~d-~~tL~~~~i~~~~~l~l~~~~ 808 (847)
..+++-|.++||..+|=+++. ..+|..|+-- .-..+|+..+-| ++||++.||.--|.|.++.-+
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPg 110 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPG 110 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTT
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCC
Confidence 467899999999999876654 4578777653 235688888544 899999999999999999544
No 166
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=20.57 E-value=2.7e+02 Score=23.86 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=38.7
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhC-C----------CCCCceEEeCCeecccccchHhhcCCCCCCEEEEE
Q 003108 745 SFVNLKVSASTSIYQLKMMIWESLG-V----------VKENQILHKGQRIIDQECATLADLNIFPGDKLWVQ 805 (847)
Q Consensus 745 ~~~~l~v~~~~tv~~lK~~I~~~~g-i----------~p~~Q~L~~~G~~L~~d~~tL~~~~i~~~~~l~l~ 805 (847)
+...+++....||.+|...+..... + ....-.+..||+... . +.-|.+||.|.+.
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----DEELKDGDVVGVF 92 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----TCBCCTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----CCCCCCCCEEEEE
Confidence 5667888788999999999987741 1 112234677887663 2 4568999998876
Done!