Query 003111
Match_columns 846
No_of_seqs 563 out of 3320
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0925 mRNA splicing factor A 100.0 2.3E-89 4.9E-94 743.6 30.2 437 1-539 197-688 (699)
2 KOG0923 mRNA splicing factor A 100.0 1.7E-89 3.8E-94 765.1 22.6 433 1-529 416-894 (902)
3 KOG0922 DEAH-box RNA helicase 100.0 1.1E-88 2.3E-93 769.0 24.6 415 1-513 201-652 (674)
4 KOG0924 mRNA splicing factor A 100.0 5.6E-85 1.2E-89 728.7 21.3 412 1-513 506-958 (1042)
5 KOG0920 ATP-dependent RNA heli 100.0 4.9E-79 1.1E-83 722.4 28.7 440 1-500 325-777 (924)
6 PRK11131 ATP-dependent RNA hel 100.0 7.1E-73 1.5E-77 693.3 33.2 431 1-513 224-682 (1294)
7 COG1643 HrpA HrpA-like helicas 100.0 9.8E-70 2.1E-74 646.3 27.5 376 1-457 201-585 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.7E-69 1.2E-73 661.1 33.3 428 1-513 217-672 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 2.4E-62 5.2E-67 554.8 22.4 367 1-459 420-920 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.5E-55 9.8E-60 527.5 23.3 292 1-346 152-445 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.5E-52 5.5E-57 504.5 23.7 290 1-344 155-448 (812)
12 KOG0921 Dosage compensation co 100.0 3.5E-43 7.6E-48 402.7 13.4 404 1-458 531-964 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 5E-38 1.1E-42 372.1 20.2 260 1-327 327-594 (675)
14 PRK01172 ski2-like helicase; P 99.8 2.5E-18 5.4E-23 207.6 15.5 212 102-329 236-493 (674)
15 PRK02362 ski2-like helicase; P 99.6 3.9E-14 8.5E-19 172.9 26.2 215 102-328 243-514 (737)
16 PF04408 HA2: Helicase associa 99.5 1.3E-14 2.8E-19 134.2 6.1 100 281-388 1-102 (102)
17 PRK00254 ski2-like helicase; P 99.5 7E-13 1.5E-17 161.5 21.7 208 103-327 239-504 (720)
18 KOG0921 Dosage compensation co 99.4 2.8E-14 6.1E-19 166.3 0.6 391 1-455 553-964 (1282)
19 smart00847 HA2 Helicase associ 99.4 2E-13 4.3E-18 123.3 4.7 85 281-372 1-87 (92)
20 PRK11776 ATP-dependent RNA hel 99.3 9.6E-12 2.1E-16 144.1 11.6 117 90-228 232-350 (460)
21 PTZ00110 helicase; Provisional 99.2 4.3E-11 9.4E-16 141.4 12.1 107 102-228 377-485 (545)
22 KOG0331 ATP-dependent RNA heli 99.2 6.1E-11 1.3E-15 136.0 12.1 124 84-230 326-451 (519)
23 PRK04837 ATP-dependent RNA hel 99.2 3.7E-11 8.1E-16 137.7 10.4 117 90-228 245-363 (423)
24 PRK01297 ATP-dependent RNA hel 99.2 8.3E-11 1.8E-15 136.9 12.3 105 103-227 336-442 (475)
25 COG4098 comFA Superfamily II D 99.2 1.5E-10 3.3E-15 124.5 13.1 173 1-226 239-416 (441)
26 TIGR00580 mfd transcription-re 99.2 2E-10 4.3E-15 142.1 14.2 109 102-227 660-770 (926)
27 PRK11057 ATP-dependent DNA hel 99.2 1.1E-10 2.4E-15 139.7 11.7 108 102-229 236-345 (607)
28 TIGR00614 recQ_fam ATP-depende 99.2 1.4E-10 3.1E-15 134.8 12.2 107 103-229 227-335 (470)
29 PRK11192 ATP-dependent RNA hel 99.2 1.7E-10 3.7E-15 132.6 12.2 119 89-229 234-354 (434)
30 PTZ00424 helicase 45; Provisio 99.1 1E-10 2.3E-15 132.6 10.3 119 89-229 256-376 (401)
31 PRK10590 ATP-dependent RNA hel 99.1 2.3E-10 5.1E-15 132.5 11.6 117 90-228 235-353 (456)
32 PLN00206 DEAD-box ATP-dependen 99.1 2.5E-10 5.4E-15 134.3 11.8 107 103-228 368-476 (518)
33 PRK04537 ATP-dependent RNA hel 99.1 3E-10 6.5E-15 135.0 11.9 106 102-227 257-364 (572)
34 PRK10917 ATP-dependent DNA hel 99.1 1.1E-09 2.4E-14 132.7 15.0 106 103-225 472-587 (681)
35 TIGR00643 recG ATP-dependent D 99.1 1.2E-09 2.6E-14 131.4 14.7 106 103-225 449-564 (630)
36 PRK10689 transcription-repair 99.0 8E-10 1.7E-14 139.5 12.7 108 102-226 809-918 (1147)
37 PLN03137 ATP-dependent DNA hel 99.0 6.6E-10 1.4E-14 136.7 11.6 108 103-230 681-790 (1195)
38 PRK11634 ATP-dependent RNA hel 99.0 1E-09 2.2E-14 131.7 12.0 105 103-227 246-352 (629)
39 TIGR01389 recQ ATP-dependent D 99.0 1.1E-09 2.3E-14 131.0 11.9 107 103-229 225-333 (591)
40 COG0513 SrmB Superfamily II DN 99.0 1.7E-09 3.8E-14 127.0 11.5 116 89-226 262-379 (513)
41 PRK13767 ATP-dependent helicas 99.0 4.8E-09 1E-13 130.4 15.5 103 103-223 285-396 (876)
42 COG1202 Superfamily II helicas 99.0 6.1E-09 1.3E-13 118.2 14.6 218 102-343 440-679 (830)
43 PRK12898 secA preprotein trans 99.0 7.1E-09 1.5E-13 123.2 16.0 119 84-227 459-586 (656)
44 TIGR01587 cas3_core CRISPR-ass 98.9 4.7E-09 1E-13 117.4 12.5 106 102-228 222-337 (358)
45 TIGR03714 secA2 accessory Sec 98.9 6.9E-09 1.5E-13 124.7 14.2 119 83-227 409-537 (762)
46 KOG0330 ATP-dependent RNA heli 98.9 3.1E-09 6.6E-14 116.2 10.0 105 102-226 300-406 (476)
47 PRK09751 putative ATP-dependen 98.9 6.9E-09 1.5E-13 132.4 13.8 100 103-220 245-376 (1490)
48 cd00079 HELICc Helicase superf 98.9 1E-08 2.2E-13 96.7 11.0 101 102-222 28-130 (131)
49 COG1111 MPH1 ERCC4-like helica 98.9 1.3E-08 2.7E-13 115.1 12.9 123 84-227 350-481 (542)
50 TIGR03158 cas3_cyano CRISPR-as 98.9 1.3E-08 2.8E-13 114.5 13.1 86 102-213 272-357 (357)
51 KOG0333 U5 snRNP-like RNA heli 98.9 1.2E-08 2.6E-13 115.0 11.2 105 104-228 519-625 (673)
52 TIGR03817 DECH_helic helicase/ 98.8 7.7E-09 1.7E-13 126.3 10.7 106 103-226 272-385 (742)
53 PRK09200 preprotein translocas 98.8 2E-08 4.4E-13 121.7 13.9 119 84-227 414-541 (790)
54 TIGR02621 cas3_GSU0051 CRISPR- 98.8 7.7E-08 1.7E-12 117.0 15.4 128 102-254 272-419 (844)
55 KOG0345 ATP-dependent RNA heli 98.8 1.5E-08 3.3E-13 113.0 8.1 135 90-244 245-384 (567)
56 PRK12906 secA preprotein trans 98.8 5.6E-08 1.2E-12 117.3 13.4 120 83-227 425-553 (796)
57 PRK13766 Hef nuclease; Provisi 98.7 7.5E-08 1.6E-12 118.8 13.1 123 84-228 349-480 (773)
58 TIGR00963 secA preprotein tran 98.7 1.5E-07 3.2E-12 112.9 14.3 120 83-228 390-518 (745)
59 TIGR00631 uvrb excinuclease AB 98.7 1.2E-07 2.7E-12 114.1 12.7 110 103-227 443-553 (655)
60 KOG0340 ATP-dependent RNA heli 98.7 9.9E-08 2.1E-12 103.5 10.5 106 101-226 253-360 (442)
61 PF00271 Helicase_C: Helicase 98.7 5.3E-08 1.1E-12 84.7 6.7 70 128-215 7-77 (78)
62 KOG0332 ATP-dependent RNA heli 98.6 2.3E-07 4.9E-12 101.3 12.8 111 103-227 331-443 (477)
63 KOG0339 ATP-dependent RNA heli 98.6 5.8E-08 1.2E-12 109.0 7.0 121 87-229 455-577 (731)
64 PRK05298 excinuclease ABC subu 98.6 2.9E-07 6.2E-12 111.3 13.1 109 103-226 447-556 (652)
65 COG1204 Superfamily II helicas 98.6 1.9E-07 4.1E-12 113.8 11.6 215 102-327 253-525 (766)
66 smart00490 HELICc helicase sup 98.6 1E-07 2.2E-12 82.2 6.6 70 128-215 11-81 (82)
67 COG1197 Mfd Transcription-repa 98.6 2.5E-07 5.5E-12 113.8 12.0 110 101-227 802-913 (1139)
68 PRK12900 secA preprotein trans 98.5 4.6E-07 1E-11 110.5 11.9 120 83-228 583-712 (1025)
69 COG1201 Lhr Lhr-like helicases 98.5 9.3E-07 2E-11 107.2 14.3 160 1-217 189-350 (814)
70 KOG1763 Uncharacterized conser 98.5 2.5E-08 5.5E-13 104.8 0.5 59 559-617 88-193 (343)
71 KOG0354 DEAD-box like helicase 98.5 6E-07 1.3E-11 106.7 11.8 123 83-226 396-528 (746)
72 PHA02558 uvsW UvsW helicase; P 98.5 5.1E-07 1.1E-11 106.1 11.0 111 85-219 331-443 (501)
73 COG1200 RecG RecG-like helicas 98.5 7.4E-07 1.6E-11 104.7 11.9 107 104-227 475-591 (677)
74 KOG0342 ATP-dependent RNA heli 98.5 4.5E-07 9.8E-12 102.1 9.5 126 103-248 331-466 (543)
75 KOG0335 ATP-dependent RNA heli 98.4 5.5E-07 1.2E-11 102.6 9.3 103 104-226 339-443 (482)
76 KOG0347 RNA helicase [RNA proc 98.4 8.7E-07 1.9E-11 100.8 10.5 105 102-226 463-569 (731)
77 KOG0336 ATP-dependent RNA heli 98.4 6.1E-07 1.3E-11 98.7 8.4 124 103-246 466-600 (629)
78 KOG0341 DEAD-box protein abstr 98.4 6.7E-07 1.5E-11 97.8 6.9 104 104-227 423-528 (610)
79 KOG0328 Predicted ATP-dependen 98.3 1.4E-06 3E-11 92.2 8.8 106 104-229 268-375 (400)
80 PRK09694 helicase Cas3; Provis 98.3 1.8E-06 3.8E-11 106.7 11.0 94 102-216 560-663 (878)
81 COG0514 RecQ Superfamily II DN 98.3 2E-06 4.3E-11 101.1 10.5 109 102-230 230-340 (590)
82 KOG1040 Polyadenylation factor 98.3 2.2E-07 4.8E-12 101.9 2.5 57 559-615 73-130 (325)
83 KOG1677 CCCH-type Zn-finger pr 98.3 3.8E-07 8.3E-12 101.5 4.3 60 559-618 128-205 (332)
84 KOG0348 ATP-dependent RNA heli 98.3 2E-06 4.4E-11 97.5 9.9 126 87-232 412-561 (708)
85 PRK13104 secA preprotein trans 98.3 3.7E-06 7.9E-11 102.6 12.4 82 82-170 428-509 (896)
86 KOG0338 ATP-dependent RNA heli 98.3 1.4E-06 3.1E-11 98.3 8.0 105 103-227 427-533 (691)
87 TIGR00595 priA primosomal prot 98.3 2.6E-06 5.7E-11 100.1 9.8 99 115-221 271-375 (505)
88 TIGR00603 rad25 DNA repair hel 98.2 4.3E-06 9.4E-11 100.9 11.4 103 102-228 496-608 (732)
89 KOG0344 ATP-dependent RNA heli 98.2 3.5E-06 7.6E-11 97.0 9.6 107 104-229 389-497 (593)
90 PRK13107 preprotein translocas 98.2 7.3E-06 1.6E-10 99.8 12.2 82 82-170 433-514 (908)
91 KOG0343 RNA Helicase [RNA proc 98.2 4.9E-06 1.1E-10 94.8 9.3 120 89-228 302-423 (758)
92 PRK04914 ATP-dependent helicas 98.1 1.6E-05 3.4E-10 99.1 12.6 117 90-227 483-605 (956)
93 COG5252 Uncharacterized conser 98.1 7.6E-07 1.6E-11 91.2 0.3 59 558-616 80-177 (299)
94 PRK12904 preprotein translocas 98.0 2.6E-05 5.7E-10 95.1 10.7 126 83-227 415-573 (830)
95 PRK05580 primosome assembly pr 97.9 2.9E-05 6.4E-10 94.5 10.2 98 115-222 439-544 (679)
96 KOG0326 ATP-dependent RNA heli 97.9 1.2E-05 2.5E-10 86.6 5.9 105 104-228 324-430 (459)
97 KOG0951 RNA helicase BRR2, DEA 97.9 8.2E-05 1.8E-09 91.6 13.3 175 129-316 608-819 (1674)
98 KOG0350 DEAD-box ATP-dependent 97.9 2.5E-05 5.3E-10 88.5 8.0 107 103-227 430-540 (620)
99 KOG0352 ATP-dependent DNA heli 97.9 5.4E-05 1.2E-09 84.2 10.0 109 102-230 255-365 (641)
100 PF10354 DUF2431: Domain of un 97.8 2.7E-05 5.9E-10 78.5 6.3 145 651-799 1-158 (166)
101 KOG0952 DNA/RNA helicase MER3/ 97.8 0.00022 4.9E-09 86.8 14.2 230 103-343 350-639 (1230)
102 PF00642 zf-CCCH: Zinc finger 97.8 5E-06 1.1E-10 58.4 0.1 24 562-585 2-26 (27)
103 KOG1492 C3H1-type Zn-finger pr 97.8 8.7E-06 1.9E-10 82.9 1.7 63 550-614 220-283 (377)
104 KOG0334 RNA helicase [RNA proc 97.7 8.2E-05 1.8E-09 90.8 9.1 106 102-227 613-720 (997)
105 KOG0351 ATP-dependent DNA heli 97.7 0.00012 2.7E-09 90.7 9.5 120 89-230 474-595 (941)
106 KOG0349 Putative DEAD-box RNA 97.6 0.00013 2.7E-09 81.3 7.9 104 104-225 507-613 (725)
107 smart00356 ZnF_C3H1 zinc finge 97.6 3.1E-05 6.7E-10 53.9 2.0 24 562-585 3-26 (27)
108 PRK12326 preprotein translocas 97.6 0.00062 1.3E-08 81.8 13.9 120 82-226 411-546 (764)
109 PF00642 zf-CCCH: Zinc finger 97.6 1.4E-05 3E-10 56.1 0.1 25 589-613 2-26 (27)
110 KOG0327 Translation initiation 97.6 0.00023 5E-09 78.8 8.8 118 89-230 254-373 (397)
111 KOG0950 DNA polymerase theta/e 97.5 0.00031 6.7E-09 85.1 9.0 85 130-228 524-612 (1008)
112 COG5063 CTH1 CCCH-type Zn-fing 97.5 0.00012 2.6E-09 78.1 4.9 100 564-664 231-347 (351)
113 PRK12903 secA preprotein trans 97.4 0.00075 1.6E-08 82.2 11.6 120 82-226 410-538 (925)
114 COG1203 CRISPR-associated heli 97.4 0.00028 6E-09 86.8 7.9 102 102-226 440-549 (733)
115 KOG0953 Mitochondrial RNA heli 97.4 0.00064 1.4E-08 78.3 9.2 114 102-227 357-477 (700)
116 COG5084 YTH1 Cleavage and poly 97.4 0.00015 3.3E-09 78.2 4.1 60 560-619 101-163 (285)
117 KOG1492 C3H1-type Zn-finger pr 97.3 0.00011 2.4E-09 75.0 2.6 59 561-621 204-263 (377)
118 KOG4284 DEAD box protein [Tran 97.3 0.00074 1.6E-08 78.7 9.3 123 83-227 255-379 (980)
119 KOG2494 C3H1-type Zn-finger pr 97.2 0.00012 2.6E-09 79.3 1.6 54 561-616 35-95 (331)
120 TIGR01054 rgy reverse gyrase. 97.1 0.0014 3E-08 84.2 9.6 76 104-184 328-411 (1171)
121 PRK13103 secA preprotein trans 97.0 0.0024 5.2E-08 78.5 10.0 81 82-169 433-513 (913)
122 PRK09401 reverse gyrase; Revie 97.0 0.0015 3.3E-08 83.7 8.3 74 104-183 330-411 (1176)
123 KOG1040 Polyadenylation factor 97.0 0.0005 1.1E-08 75.9 3.3 79 550-629 90-172 (325)
124 PRK14701 reverse gyrase; Provi 96.9 0.0012 2.7E-08 86.7 7.0 111 104-227 332-456 (1638)
125 smart00356 ZnF_C3H1 zinc finge 96.9 0.00061 1.3E-08 47.3 2.3 24 589-613 3-26 (27)
126 PRK12901 secA preprotein trans 96.9 0.0054 1.2E-07 76.0 11.6 120 82-226 612-740 (1112)
127 KOG1595 CCCH-type Zn-finger pr 96.9 0.0015 3.2E-08 75.1 6.3 87 499-617 200-294 (528)
128 PRK12899 secA preprotein trans 96.9 0.0059 1.3E-07 75.4 11.5 121 82-227 552-681 (970)
129 COG1205 Distinct helicase fami 96.7 0.0029 6.4E-08 78.8 7.2 105 104-226 308-421 (851)
130 PRK11448 hsdR type I restricti 96.5 0.02 4.4E-07 73.4 12.8 105 102-226 698-814 (1123)
131 COG5063 CTH1 CCCH-type Zn-fing 96.4 0.0022 4.7E-08 68.8 3.2 57 559-615 270-339 (351)
132 KOG4791 Uncharacterized conser 96.3 0.0024 5.2E-08 71.8 3.0 56 562-619 31-89 (667)
133 KOG0337 ATP-dependent RNA heli 96.2 0.012 2.6E-07 66.1 7.4 87 90-179 250-337 (529)
134 CHL00122 secA preprotein trans 96.2 0.027 5.9E-07 69.3 11.0 80 83-169 409-490 (870)
135 KOG2185 Predicted RNA-processi 96.1 0.0023 5E-08 70.9 1.7 41 576-617 126-166 (486)
136 COG1061 SSL2 DNA or RNA helica 96.0 0.04 8.8E-07 64.1 11.2 96 103-219 284-380 (442)
137 KOG0346 RNA helicase [RNA proc 96.0 0.014 3E-07 66.0 6.7 105 102-226 268-409 (569)
138 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0048 1E-07 39.8 1.4 17 566-584 2-18 (19)
139 KOG2333 Uncharacterized conser 95.8 0.0041 8.9E-08 70.6 1.7 50 562-611 75-135 (614)
140 KOG0947 Cytoplasmic exosomal R 95.8 0.064 1.4E-06 65.7 11.5 129 86-227 554-723 (1248)
141 TIGR01407 dinG_rel DnaQ family 95.6 0.037 8.1E-07 69.5 9.3 133 82-223 657-811 (850)
142 PRK12902 secA preprotein trans 95.6 0.091 2E-06 64.9 12.1 81 82-169 423-505 (939)
143 KOG4150 Predicted ATP-dependen 95.5 0.019 4E-07 66.5 5.6 96 104-217 527-629 (1034)
144 KOG1677 CCCH-type Zn-finger pr 95.3 0.012 2.7E-07 65.6 3.2 55 564-618 87-161 (332)
145 KOG1595 CCCH-type Zn-finger pr 95.2 0.013 2.8E-07 67.6 3.4 49 562-614 200-259 (528)
146 KOG0353 ATP-dependent DNA heli 95.2 0.059 1.3E-06 59.7 7.8 77 104-182 319-396 (695)
147 COG4096 HsdR Type I site-speci 95.1 0.21 4.6E-06 60.8 12.9 150 84-252 406-573 (875)
148 KOG2185 Predicted RNA-processi 95.0 0.0092 2E-07 66.3 1.1 65 508-587 99-164 (486)
149 PF14608 zf-CCCH_2: Zinc finge 94.9 0.015 3.3E-07 37.5 1.6 19 592-613 1-19 (19)
150 PLN03142 Probable chromatin-re 94.9 0.15 3.3E-06 64.7 11.5 108 103-230 488-602 (1033)
151 COG5084 YTH1 Cleavage and poly 94.9 0.02 4.3E-07 62.2 3.2 53 563-615 134-190 (285)
152 KOG0948 Nuclear exosomal RNA h 94.5 0.061 1.3E-06 64.4 6.4 88 131-228 449-540 (1041)
153 PRK11747 dinG ATP-dependent DN 94.1 0.32 7E-06 59.9 11.8 92 82-179 518-613 (697)
154 COG0556 UvrB Helicase subunit 94.0 0.3 6.4E-06 57.0 10.2 105 104-223 448-553 (663)
155 COG1199 DinG Rad3-related DNA 93.3 0.37 8.1E-06 58.8 10.4 138 81-223 461-614 (654)
156 PRK08074 bifunctional ATP-depe 91.6 0.98 2.1E-05 57.6 11.2 134 82-223 735-890 (928)
157 KOG0391 SNF2 family DNA-depend 91.5 1.2 2.6E-05 56.2 11.0 110 103-229 1277-1389(1958)
158 KOG1039 Predicted E3 ubiquitin 91.4 0.075 1.6E-06 59.5 1.0 25 591-616 9-33 (344)
159 COG0653 SecA Preprotein transl 90.9 0.62 1.4E-05 57.5 8.1 114 82-220 413-538 (822)
160 KOG2494 C3H1-type Zn-finger pr 89.7 0.85 1.8E-05 50.2 7.1 56 559-616 67-155 (331)
161 COG5152 Uncharacterized conser 89.3 0.13 2.8E-06 52.4 0.4 25 562-586 140-165 (259)
162 COG5152 Uncharacterized conser 89.0 0.16 3.4E-06 51.8 0.8 33 590-622 141-173 (259)
163 KOG0385 Chromatin remodeling c 87.8 3.8 8.2E-05 50.0 11.1 106 103-229 488-601 (971)
164 KOG1123 RNA polymerase II tran 87.6 1.9 4E-05 50.2 8.1 110 79-216 524-635 (776)
165 TIGR02562 cas3_yersinia CRISPR 87.4 1.1 2.4E-05 56.6 6.8 116 82-218 729-882 (1110)
166 KOG0384 Chromodomain-helicase 86.8 1.4 3.1E-05 55.9 7.3 129 102-252 699-834 (1373)
167 KOG1039 Predicted E3 ubiquitin 85.8 0.29 6.2E-06 54.9 0.6 24 564-587 9-32 (344)
168 PF13307 Helicase_C_2: Helicas 85.3 1.7 3.7E-05 43.7 5.9 82 93-180 3-90 (167)
169 KOG0949 Predicted helicase, DE 85.1 1.2 2.5E-05 55.4 5.3 75 132-223 966-1044(1330)
170 KOG1763 Uncharacterized conser 85.0 0.27 5.8E-06 53.0 -0.1 30 587-617 89-118 (343)
171 KOG0389 SNF2 family DNA-depend 84.4 5.1 0.00011 49.1 10.0 122 85-229 764-890 (941)
172 COG4581 Superfamily II RNA hel 84.4 0.88 1.9E-05 57.6 4.0 81 133-223 449-533 (1041)
173 PF10650 zf-C3H1: Putative zin 83.9 0.58 1.3E-05 31.7 1.2 19 565-584 2-21 (23)
174 KOG4791 Uncharacterized conser 79.8 0.89 1.9E-05 51.9 1.5 52 561-614 59-141 (667)
175 PRK14873 primosome assembly pr 77.6 6.1 0.00013 48.6 7.9 61 103-163 189-250 (665)
176 PF10650 zf-C3H1: Putative zin 76.7 1.5 3.3E-05 29.8 1.3 22 591-613 1-22 (23)
177 KOG1813 Predicted E3 ubiquitin 74.6 1.1 2.3E-05 48.8 0.2 27 561-587 184-211 (313)
178 KOG0392 SNF2 family DNA-depend 74.4 6.9 0.00015 50.1 7.1 112 103-229 1341-1456(1549)
179 KOG0387 Transcription-coupled 72.4 24 0.00052 43.6 10.7 110 104-229 548-660 (923)
180 KOG0390 DNA repair protein, SN 72.3 36 0.00079 42.4 12.4 109 105-229 597-709 (776)
181 KOG1813 Predicted E3 ubiquitin 70.8 1.5 3.3E-05 47.7 0.3 33 590-622 186-218 (313)
182 KOG0388 SNF2 family DNA-depend 68.3 27 0.00058 42.7 9.7 111 102-229 1044-1156(1185)
183 COG1198 PriA Primosomal protei 68.2 8 0.00017 47.8 5.8 106 104-222 485-598 (730)
184 KOG0153 Predicted RNA-binding 65.7 3.5 7.7E-05 45.8 1.9 30 560-589 158-187 (377)
185 COG0553 HepA Superfamily II DN 65.0 34 0.00073 42.9 10.6 109 104-229 713-824 (866)
186 PF07717 OB_NTP_bind: Oligonuc 64.6 4.3 9.2E-05 37.9 2.0 36 470-513 66-101 (114)
187 PRK05580 primosome assembly pr 63.1 12 0.00027 46.1 6.2 72 103-176 191-263 (679)
188 TIGR00348 hsdR type I site-spe 61.9 40 0.00087 41.6 10.2 99 102-219 514-639 (667)
189 KOG3702 Nuclear polyadenylated 61.2 8.7 0.00019 46.1 4.1 41 563-614 625-665 (681)
190 PRK07246 bifunctional ATP-depe 61.1 70 0.0015 40.6 12.3 130 82-223 631-780 (820)
191 KOG0329 ATP-dependent RNA heli 57.8 5.4 0.00012 42.8 1.5 52 157-226 302-354 (387)
192 TIGR00595 priA primosomal prot 54.7 33 0.00072 40.9 7.6 72 103-176 26-98 (505)
193 cd00268 DEADc DEAD-box helicas 53.8 52 0.0011 33.3 8.0 85 89-176 56-148 (203)
194 KOG3702 Nuclear polyadenylated 53.7 18 0.00038 43.6 4.9 20 685-704 628-647 (681)
195 COG0513 SrmB Superfamily II DN 52.8 36 0.00077 40.7 7.5 87 85-176 82-179 (513)
196 KOG0153 Predicted RNA-binding 50.5 8.4 0.00018 42.9 1.6 25 590-615 161-185 (377)
197 KOG0331 ATP-dependent RNA heli 48.5 48 0.001 39.5 7.4 70 104-176 167-244 (519)
198 COG1198 PriA Primosomal protei 47.7 24 0.00053 43.8 5.0 72 103-176 246-318 (730)
199 KOG2202 U2 snRNP splicing fact 45.1 10 0.00022 40.7 1.2 28 560-587 149-176 (260)
200 KOG0347 RNA helicase [RNA proc 44.7 36 0.00078 40.6 5.5 54 105-161 266-321 (731)
201 COG5252 Uncharacterized conser 44.5 6.8 0.00015 41.3 -0.2 26 588-614 83-108 (299)
202 KOG0339 ATP-dependent RNA heli 44.4 62 0.0013 38.4 7.2 86 85-176 276-375 (731)
203 TIGR00596 rad1 DNA repair prot 44.1 52 0.0011 41.6 7.2 39 84-122 272-315 (814)
204 TIGR00604 rad3 DNA repair heli 43.5 56 0.0012 40.6 7.4 96 81-181 504-614 (705)
205 KOG1015 Transcription regulato 42.1 61 0.0013 41.1 7.0 122 90-228 1130-1278(1567)
206 PRK10917 ATP-dependent DNA hel 41.1 45 0.00097 41.3 6.0 74 103-176 311-388 (681)
207 PRK11776 ATP-dependent RNA hel 39.3 66 0.0014 37.6 6.8 70 104-176 74-152 (460)
208 PRK11634 ATP-dependent RNA hel 36.1 1.3E+02 0.0028 37.0 8.8 71 103-176 75-154 (629)
209 PRK11192 ATP-dependent RNA hel 35.6 1.4E+02 0.0031 34.4 8.7 71 103-176 74-152 (434)
210 PRK04837 ATP-dependent RNA hel 35.0 1.5E+02 0.0033 34.1 8.8 71 103-176 84-162 (423)
211 PF06862 DUF1253: Protein of u 34.9 1.5E+02 0.0033 34.8 8.7 77 102-180 300-379 (442)
212 PRK10590 ATP-dependent RNA hel 34.3 1.7E+02 0.0036 34.3 9.1 70 104-176 77-154 (456)
213 PF08452 DNAP_B_exo_N: DNA pol 32.3 20 0.00044 23.8 0.6 10 718-727 2-11 (22)
214 TIGR02647 DNA conserved hypoth 32.0 26 0.00057 30.9 1.4 33 277-312 34-66 (77)
215 COG1110 Reverse gyrase [DNA re 30.6 1.1E+02 0.0023 39.4 6.7 81 75-162 104-190 (1187)
216 PTZ00110 helicase; Provisional 28.5 1.8E+02 0.0039 35.1 8.2 70 104-176 205-282 (545)
217 PRK04537 ATP-dependent RNA hel 28.3 1.5E+02 0.0034 35.9 7.7 71 103-176 85-164 (572)
218 PF00270 DEAD: DEAD/DEAH box h 28.1 1.6E+02 0.0035 28.5 6.5 56 103-161 45-103 (169)
219 KOG0338 ATP-dependent RNA heli 26.7 1.2E+02 0.0025 36.2 5.8 69 104-176 254-332 (691)
220 TIGR00643 recG ATP-dependent D 26.1 1.1E+02 0.0024 37.5 5.9 74 103-176 285-362 (630)
221 PRK01297 ATP-dependent RNA hel 25.8 2.5E+02 0.0055 32.9 8.7 72 103-176 163-242 (475)
222 KOG0329 ATP-dependent RNA heli 24.6 1.1E+02 0.0023 33.4 4.7 74 103-179 111-194 (387)
223 TIGR00580 mfd transcription-re 24.1 1.2E+02 0.0027 39.0 5.9 74 103-176 501-578 (926)
224 KOG0389 SNF2 family DNA-depend 21.4 2.4E+02 0.0053 35.4 7.3 77 102-179 448-533 (941)
225 KOG0337 ATP-dependent RNA heli 21.1 2.5E+02 0.0053 32.9 6.8 86 87-176 76-169 (529)
226 TIGR03117 cas_csf4 CRISPR-asso 20.4 5.9E+02 0.013 31.5 10.4 82 83-169 454-538 (636)
No 1
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-89 Score=743.56 Aligned_cols=437 Identities=24% Similarity=0.336 Sum_probs=382.2
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|++||++ +|++.||| +|||+++|..++ .
T Consensus 197 mSatl~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e~-----------------------e--------- 233 (699)
T KOG0925|consen 197 MSATLDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPEP-----------------------E--------- 233 (699)
T ss_pred eecccchHHHHHHhCC------CCeeecCC-----CCceEEEecCCC-----------------------C---------
Confidence 8999999999999986 89999997 799999987632 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhc-------CCCCCcEEEEecCCccHHHHHHHhhc-c--
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKI-C-- 150 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~-------~~~~~~~v~~Lhs~l~~~~~~~~~~~-~-- 150 (846)
++.++.++.+|.+||..++ +|||||||+|.+||+.+++.+. ...+.++|+||| |.+ |+.++++ +
T Consensus 234 rDylEaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy---P~~-qq~iFep~p~~ 307 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY---PAQ-QQRIFEPAPEK 307 (699)
T ss_pred hhHHHHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC---chh-hccccCCCCcc
Confidence 2345667799999999987 6899999999999999998774 335679999999 444 4444443 2
Q ss_pred ---CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 151 ---KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 151 ---~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
...|||||+|||||+|+||++|+||||+|+.|+++|||+.+++++.+.||||++|+||+|||||++||+||||||++
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 12599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccc
Q 003111 228 FFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFY 306 (846)
Q Consensus 228 ~~~-~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~L 306 (846)
+|+ .|.+.+.|||+|+||.++||++|. +|+.+...++|+|||.|+++++|++.|..|+|||++ | .||++
T Consensus 388 ~~~~em~~~typeilrsNL~s~VL~LKk-----lgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDd---G--nLT~l 457 (699)
T KOG0925|consen 388 AFEKEMQPQTYPEILRSNLSSTVLQLKK-----LGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDD---G--NLTSL 457 (699)
T ss_pred hhhhcCCCCCcHHHHHHhhHHHHHHHHh-----cCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCC---c--ccchh
Confidence 997 799999999999999999999975 444555677999999999999999999999999984 7 69999
Q ss_pred cceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCC-CchHHHHHHhcccCCCCCCcccccccchhhhh
Q 003111 307 GRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIM 385 (846)
Q Consensus 307 Gr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~-~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l 385 (846)
|..|++||+||+++||||.+++|.|++|+++|+||||+.+ .|++|. +.+++|+.++..|.|.+|| |+
T Consensus 458 G~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~kaAdeak~~faH~dGD-----------Hl 525 (699)
T KOG0925|consen 458 GEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKAADEAKETFAHIDGD-----------HL 525 (699)
T ss_pred hhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHHHHHHHHHhccCCcc-----------hH
Confidence 9999999999999999999999999999999999999876 899998 7788899999999999998 66
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 003111 386 GNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGT 465 (846)
Q Consensus 386 ~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~ 465 (846)
+++|+|+++++ ++....||++||||+++|+.++.+|.||.++|.|+.++..+.
T Consensus 526 TLlnVYhAfkq---------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st 578 (699)
T KOG0925|consen 526 TLLNVYHAFKQ---------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST 578 (699)
T ss_pred HHHHHHHHHHh---------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC
Confidence 66777776654 345688999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCcchh------------------------------hhhhcccCCCCCCcchhhcccCCCCccccceecc--
Q 003111 466 SNGLPTYYDPYEFE------------------------------HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA-- 513 (846)
Q Consensus 466 ~~~~p~~~~~~~~~------------------------------h~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~-- 513 (846)
..+.+.||.++... ..+.+...|+|++||++++++ |||+|+|++
T Consensus 579 ~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~----~N~ir~vt~I~ 654 (699)
T KOG0925|consen 579 DFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTT----KNFIRTVTDIR 654 (699)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeec----cceeeeecccC
Confidence 55555555543322 223556899999999999999 999999999
Q ss_pred --------cCccccccccchhHHHHHHHHHHhhh
Q 003111 514 --------VPFVAPNQFQSNNVAEKLASIIKEIR 539 (846)
Q Consensus 514 --------~~Y~~~n~f~~~eaae~l~~iiKk~r 539 (846)
|+|++.++|+++++++.+.++.+..+
T Consensus 655 pewlv~laP~YydlsNfp~~e~k~~L~~~~~~~~ 688 (699)
T KOG0925|consen 655 PEWLVELAPQYYDLSNFPPSEAKRALEQLYKVRR 688 (699)
T ss_pred HHHHHHhchhhcccccCCchHHHHHHHHHHHHHh
Confidence 99999999999999999998544443
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-89 Score=765.07 Aligned_cols=433 Identities=23% Similarity=0.302 Sum_probs=381.0
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|+.||++ +||+.||| |.|||+++|.+ .|.+||.+++|
T Consensus 416 sSAT~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~-----------------------~PEAdYldAai- 461 (902)
T KOG0923|consen 416 SSATMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTK-----------------------APEADYLDAAI- 461 (902)
T ss_pred eccccCHHHHHHhccC------CcEEeccC----cccceeeeccc-----------------------CCchhHHHHHH-
Confidence 7999999999999986 89999998 89999999865 35566666554
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHH-------hcCCCCCcEEEEecCCccHHHHHHHhhc-cCC
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHL-------MKPLSSFFKVHILHSSVDTEQALMAMKI-CKS 152 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~-------L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~ 152 (846)
.+|++||.+++ .|||||||+|++||+.+... |.+...++.++|+|++||.+.|..+|.+ ++|
T Consensus 462 --------~tVlqIH~tqp--~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g 531 (902)
T KOG0923|consen 462 --------VTVLQIHLTQP--LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG 531 (902)
T ss_pred --------hhheeeEeccC--CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC
Confidence 79999999987 48999999999999876544 4455667899999999999999988864 688
Q ss_pred CeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccc-c
Q 003111 153 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-T 231 (846)
Q Consensus 153 ~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~-~ 231 (846)
.|||||||||||||||||||.||||+|++|+..|||++||++|.+.|||||+|.||+|||||++||+||||||...|. .
T Consensus 532 aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 532 ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHE 611 (902)
T ss_pred ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 6
Q ss_pred ccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceec
Q 003111 232 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 311 (846)
Q Consensus 232 l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma 311 (846)
+.+.++|||+|+||.++||.||. +|+.+.+.|+|||||+.+++..||+.|+.||||+.. | +||.+|+.||
T Consensus 612 LE~~t~PEIqRtnL~nvVL~LkS-----LGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~---G--eLTk~GrrMa 681 (902)
T KOG0923|consen 612 LEEMTVPEIQRTNLGNVVLLLKS-----LGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHL---G--ELTKLGRRMA 681 (902)
T ss_pred hccCCCcceeeccchhHHHHHHh-----cCcchhcccccCCCCChHHHHHHHHHHHHhhccccc---c--chhhhhhhhh
Confidence 89999999999999999999974 455667888999999999999999999999999873 6 7999999999
Q ss_pred ccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhHHHH
Q 003111 312 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 391 (846)
Q Consensus 312 ~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf 391 (846)
+||+||++||||+.+.+++|.+|+++||||||+.+.+|.+|.+++..++.++..|..+.|| |+.+|++|
T Consensus 682 EfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gD-----------hi~~L~vy 750 (902)
T KOG0923|consen 682 EFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGD-----------HIVLLNVY 750 (902)
T ss_pred hcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcc-----------hhhhhHHH
Confidence 9999999999999999999999999999999999999999999999899999888887776 99999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCCC--
Q 003111 392 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL-- 469 (846)
Q Consensus 392 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~~~-- 469 (846)
+.|.. ++...+||.+||+++++|.++++||.||..++.+..+...|..+..
T Consensus 751 n~w~e---------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~ 803 (902)
T KOG0923|consen 751 NQWKE---------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDK 803 (902)
T ss_pred HHHhh---------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHH
Confidence 99986 4667899999999999999999999999999999887766532110
Q ss_pred ------------------CCCCCCcch-----h--hhhhcccCCCCCCcchhhcccCCCCccccceecc----------c
Q 003111 470 ------------------PTYYDPYEF-----E--HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----------V 514 (846)
Q Consensus 470 ------------------p~~~~~~~~-----~--h~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~----------~ 514 (846)
...|..... . .+++....|.|++||++++++ |+|||.|++ |
T Consensus 804 irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~ts----ke~mr~~~e~e~~Wlie~ap 879 (902)
T KOG0923|consen 804 IRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTS----KEFMRQVIEIEEEWLIEVAP 879 (902)
T ss_pred HHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcCh----HHHHHHHHhhhhhHHHHhch
Confidence 011111111 1 124666889999999999999 999999988 9
Q ss_pred CccccccccchhHHH
Q 003111 515 PFVAPNQFQSNNVAE 529 (846)
Q Consensus 515 ~Y~~~n~f~~~eaae 529 (846)
||+...++.+...++
T Consensus 880 hyyk~kdled~~~kk 894 (902)
T KOG0923|consen 880 HYYKLKDLEDATNKK 894 (902)
T ss_pred hhhhhhhcccccccc
Confidence 999988877665544
No 3
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-88 Score=769.05 Aligned_cols=415 Identities=27% Similarity=0.381 Sum_probs=365.3
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|++||++ ||++.||| |+|||+++|+.. +..||.+
T Consensus 201 mSATlda~kfS~yF~~------a~i~~i~G----R~fPVei~y~~~-----------------------p~~dYv~---- 243 (674)
T KOG0922|consen 201 MSATLDAEKFSEYFNN------APILTIPG----RTFPVEILYLKE-----------------------PTADYVD---- 243 (674)
T ss_pred EeeeecHHHHHHHhcC------CceEeecC----CCCceeEEeccC-----------------------CchhhHH----
Confidence 8999999999999975 89999998 899999998762 3344433
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC------CCcEEEEecCCccHHHHHHHhhc-cCCC
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKI-CKSH 153 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~------~~~~v~~Lhs~l~~~~~~~~~~~-~~~~ 153 (846)
..+.++.+||.+++ +|||||||+|++||+.+++.|.... ....++|+||+|+.++|.++|.. +.|.
T Consensus 244 -----a~~~tv~~Ih~~E~--~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~ 316 (674)
T KOG0922|consen 244 -----AALITVIQIHLTEP--PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGK 316 (674)
T ss_pred -----HHHHHHHHHHccCC--CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCc
Confidence 34589999999987 5899999999999999998886431 11268999999999999998865 5699
Q ss_pred eEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccccccc
Q 003111 154 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLE 233 (846)
Q Consensus 154 rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~ 233 (846)
|||||||||||||||||||+||||+|++|++.|||.+|++.|.++|||||+|+||+|||||++||+|||||++++|+.|+
T Consensus 317 RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~ 396 (674)
T KOG0922|consen 317 RKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMP 396 (674)
T ss_pred ceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCccccc-ccceecc
Q 003111 234 DHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF-YGRLLAS 312 (846)
Q Consensus 234 ~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~-LGr~ma~ 312 (846)
+.++|||+|++|+..+|+||++| ++ +.+.|+|+|||+++++..|++.|+.+||||+. | .||. +|+.|+.
T Consensus 397 ~~~~PEI~R~~Ls~~vL~Lkalg---i~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma~ 466 (674)
T KOG0922|consen 397 LQTVPEIQRVNLSSAVLQLKALG---IN--DPLRFPFIDPPPPEALEEALEELYSLGALDDR---G--KLTSPLGRQMAE 466 (674)
T ss_pred cCCCCceeeechHHHHHHHHhcC---CC--CcccCCCCCCCChHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhhh
Confidence 99999999999999999998643 43 45667999999999999999999999999983 6 5888 9999999
Q ss_pred cccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHH-HHHHhcccCCCCCCcccccccchhhhhhhHHHH
Q 003111 313 FSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 391 (846)
Q Consensus 313 LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~-a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf 391 (846)
||++|.++|+|+.+.++||++|+++||||||+++ +|.+|.+++.. ++..+.+|+.++|| |+++||+|
T Consensus 467 ~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a~~~~~kf~~~eGD-----------h~tlL~vy 534 (674)
T KOG0922|consen 467 LPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDADRKRAKFANPEGD-----------HLTLLNVY 534 (674)
T ss_pred cCCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhhhHHHHhhcCcccC-----------HHHHHHHH
Confidence 9999999999999999999999999999999987 89999998877 88889999999997 99999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC-
Q 003111 392 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP- 470 (846)
Q Consensus 392 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~~~p- 470 (846)
..|.. ++..++||.+|||+.++|+.+.+||.||.+++.++++...+ +.+++
T Consensus 535 ~~~~~---------------------------~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s-~~~d~~ 586 (674)
T KOG0922|consen 535 ESWKE---------------------------NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSS-CGGDME 586 (674)
T ss_pred HHHHh---------------------------cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccC-CCCCHH
Confidence 99986 35578999999999999999999999999999999877644 22221
Q ss_pred --------------------CCCCCcch-----hh--hhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 471 --------------------TYYDPYEF-----EH--TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 471 --------------------~~~~~~~~-----~h--~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
..|..... +| .++++..++|++||+++.|+ |.|||.|+.
T Consensus 587 ~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Tt----k~Y~r~Vt~ 652 (674)
T KOG0922|consen 587 KIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTT----KEYMRNVTA 652 (674)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEEEEEeecc----hHhHhheee
Confidence 11222111 11 24667779999999999999 999999998
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-85 Score=728.67 Aligned_cols=412 Identities=23% Similarity=0.340 Sum_probs=361.9
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|++||++ ||.++||| |+|||++.|+.. |..||
T Consensus 506 tSATm~a~kf~nfFgn------~p~f~IpG----RTyPV~~~~~k~-----------------------p~eDY------ 546 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFGN------CPQFTIPG----RTYPVEIMYTKT-----------------------PVEDY------ 546 (1042)
T ss_pred eeccccHHHHHHHhCC------CceeeecC----CccceEEEeccC-----------------------chHHH------
Confidence 7999999999999985 89999998 899999998652 22333
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC------CC--CCcEEEEecCCccHHHHHHHhh-ccC
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP------LS--SFFKVHILHSSVDTEQALMAMK-ICK 151 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~------~~--~~~~v~~Lhs~l~~~~~~~~~~-~~~ 151 (846)
++..+.-+++||.+.+ +||||||+||+++|+-.+..+.. .. ..+.|+|+||.||.+.|.++|. .+.
T Consensus 547 ---Veaavkq~v~Ihl~~~--~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~ 621 (1042)
T KOG0924|consen 547 ---VEAAVKQAVQIHLSGP--PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEG 621 (1042)
T ss_pred ---HHHHHhhheEeeccCC--CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCC
Confidence 3445567788998875 58999999999999876655531 12 3699999999999999988875 678
Q ss_pred CCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccc-
Q 003111 152 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG- 230 (846)
Q Consensus 152 ~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~- 230 (846)
+.|||||||||||||+|||||.||||||++|.++|||+.|+.+|.+.|||||+|.||+|||||++||.||||||+..|.
T Consensus 622 ~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~ 701 (1042)
T KOG0924|consen 622 GVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKN 701 (1042)
T ss_pred CceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCccccccccee
Q 003111 231 TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLL 310 (846)
Q Consensus 231 ~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~m 310 (846)
.|-+.++|||+|+||.++||.+|. ++..+..-|+|+|||+.+.+..++-.|..|||||.. | .||++|+.|
T Consensus 702 eml~stvPEIqRTNl~nvVLlLks-----lgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~---g--~LT~lG~~M 771 (1042)
T KOG0924|consen 702 EMLPSTVPEIQRTNLSNVVLLLKS-----LGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNT---G--QLTPLGRKM 771 (1042)
T ss_pred hcccCCCchhhhcchhhHHHHHHh-----cChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccC---C--ccchhhHHh
Confidence 799999999999999999999975 344455667999999999999999999999999983 6 699999999
Q ss_pred cccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhHHH
Q 003111 311 ASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCA 390 (846)
Q Consensus 311 a~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lna 390 (846)
++|||||.++||||.|..+||.+|+++||+|||+.. .|.+|.+++++++.++.+|+.+++| ||++||+
T Consensus 772 vefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~-VF~rpker~eead~ar~Kf~~~~sD-----------hLTlLNV 839 (1042)
T KOG0924|consen 772 VEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPA-VFYRPKEREEEADAAREKFQVPESD-----------HLTLLNV 839 (1042)
T ss_pred hhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccc-eeeccccchhhhhhHHhhhcCCCCc-----------hhhHHHH
Confidence 999999999999999999999999999999999876 8999999999999999999999987 9999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCC---
Q 003111 391 FQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSN--- 467 (846)
Q Consensus 391 f~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~--- 467 (846)
|++|.+ ++....||.+|||+.++|+.++++|.||+.+|..+++.+.|..+
T Consensus 840 f~qw~~---------------------------~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdi 892 (1042)
T KOG0924|consen 840 FNQWRK---------------------------NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDI 892 (1042)
T ss_pred HHHHHh---------------------------cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHH
Confidence 999986 45568899999999999999999999999999999998887511
Q ss_pred ---------------------------CCCCCCCCcchhhhhhccc-CCCCCCcchhhcccCCCCccccceecc
Q 003111 468 ---------------------------GLPTYYDPYEFEHTCLLNC-DPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 468 ---------------------------~~p~~~~~~~~~h~~l~k~-~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
+-|...||.+ +|+.. .|..++||+++.|+ ++||+.||+
T Consensus 893 vrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS----~L~g~y~p~Yivyhel~~T~----keym~cvT~ 958 (1042)
T KOG0924|consen 893 VRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSS----VLHGLYTPDYIVYHELLMTT----KEYMQCVTS 958 (1042)
T ss_pred HHHHHHHHHHHHHHHhccCceEEEccCCcceeecchH----hhhcCCCCCeeeehHHHHhH----HHHHHHHhh
Confidence 1122222322 23333 68888999999999 999999998
No 5
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=4.9e-79 Score=722.39 Aligned_cols=440 Identities=30% Similarity=0.371 Sum_probs=369.4
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCc-----c
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM-----A 75 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~-----~ 75 (846)
||||+|+++|++||++ +||++||| ++|||.++||||++..+.+...-.+. | .++..+. .
T Consensus 325 MSAT~dae~fs~YF~~------~pvi~i~g----rtfpV~~~fLEDil~~~~~~~~~~~~-----~-~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGG------CPVITIPG----RTFPVKEYFLEDILSKTGYVSEDDSA-----R-SGPERSQLRLARL 388 (924)
T ss_pred eeeecchHHHHHHhCC------CceEeecC----CCcchHHHHHHHHHHHhccccccccc-----c-cccccCccccccc
Confidence 9999999999999985 89999998 89999999999999877643211111 1 1111110 0
Q ss_pred ccccChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEecCCccHHHHHHHhh-c
Q 003111 76 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----SSFFKVHILHSSVDTEQALMAMK-I 149 (846)
Q Consensus 76 ~~~i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~-----~~~~~v~~Lhs~l~~~~~~~~~~-~ 149 (846)
........++||++++.+|+..+. +|+|||||||++||..+...|... ...+.++||||.|+.++|+.+++ +
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~--~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREF--EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCC--CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 000111357999999999998854 689999999999999999998642 23588999999999988888875 5
Q ss_pred cCCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 150 CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 150 ~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
++|.||||+||||||||||||||.||||||++|++.||+..++.++...|||||+|+||+|||||+++|+|||||++..|
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccc
Q 003111 230 GTLED-HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 308 (846)
Q Consensus 230 ~~l~~-~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr 308 (846)
+.+.+ +++|||+|.+|+++||++|+++ ++++..|+..+++||+.++|..|++.|..+|||+.+ ++||+||+
T Consensus 547 ~~~~~~~q~PEilR~pL~~l~L~iK~l~---~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~-----e~LT~LG~ 618 (924)
T KOG0920|consen 547 EKLMLAYQLPEILRTPLEELCLHIKVLE---QGSIKAFLSKALDPPPADAVDLAIERLKQIGALDES-----EELTPLGL 618 (924)
T ss_pred hhcccccCChHHHhChHHHhhheeeecc---CCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCc-----ccchHHHH
Confidence 97666 9999999999999999999654 677889999999999999999999999999999983 37999999
Q ss_pred eecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhH
Q 003111 309 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 388 (846)
Q Consensus 309 ~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~l 388 (846)
+||.||+||++|||++.|..|+|++++++|||+|+..+ ||..|+++++.+++++..|...+ +||||+.+
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~-PF~~~~~~~~~~~~~~~~~~~~~----------~SD~la~~ 687 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKS-PFVSPLGKREEADKAKKLLALDS----------ISDHLAVV 687 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhccCC-CcccCCCchhHHHHHHHHhccCC----------cchHHHHH
Confidence 99999999999999999999999999999999999665 99999999999999988877433 57899999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccC-C
Q 003111 389 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTS-N 467 (846)
Q Consensus 389 naf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~-~ 467 (846)
+||+.|+++..++ ...+.+||++|||+..+|+++++++.|+.+.+.++++-..+.. .
T Consensus 688 ~ay~~w~~~~~~~----------------------~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~ 745 (924)
T KOG0920|consen 688 RAYAGWREILRSG----------------------PSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAA 745 (924)
T ss_pred HHHHHHHHHHhcc----------------------chHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccc
Confidence 9999999976532 2567999999999999999999999999999999865332210 0
Q ss_pred CCCCCCCCcchhhhhhcccCCCCCCcchhhccc
Q 003111 468 GLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNE 500 (846)
Q Consensus 468 ~~p~~~~~~~~~h~~l~k~~l~~~~y~~~~~~~ 500 (846)
..+...+.++ +...+++++++..+|+..+...
T Consensus 746 ~~~~~~n~~s-~~~~~iravl~a~lyP~i~~~~ 777 (924)
T KOG0920|consen 746 LTDSECNHNS-QNPELVRAVLCAGLYPNIAFVR 777 (924)
T ss_pred cCchhhhhcC-CCHHHHHHHHhccCCCceeeee
Confidence 0011111111 1223778888888888877665
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.1e-73 Score=693.25 Aligned_cols=431 Identities=19% Similarity=0.278 Sum_probs=359.2
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.++|++||++ +|++.|+| ++|||+++|+.... . +....
T Consensus 224 mSATid~e~fs~~F~~------apvI~V~G----r~~pVei~y~p~~~----------~----------------~~~~~ 267 (1294)
T PRK11131 224 TSATIDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPIVE----------E----------------ADDTE 267 (1294)
T ss_pred eeCCCCHHHHHHHcCC------CCEEEEcC----ccccceEEEeeccc----------c----------------cchhh
Confidence 8999999999999964 67999998 78999999875210 0 00001
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHHHHhhccCCCeEEEEe
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILA 159 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA 159 (846)
.+..+.+++++..++.. + +|+|||||||.+||+.+++.|...+ ..+.+++|||+|+.++|..+++. .+.||||||
T Consensus 268 ~d~l~~ll~~V~~l~~~-~--~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~-~g~rkIIVA 343 (1294)
T PRK11131 268 RDQLQAIFDAVDELGRE-G--PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS-HSGRRIVLA 343 (1294)
T ss_pred HHHHHHHHHHHHHHhcC-C--CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc-cCCeeEEEe
Confidence 22344455666666643 2 5899999999999999999997654 34678999999999999988875 478999999
Q ss_pred cCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccccccccccch
Q 003111 160 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPA 239 (846)
Q Consensus 160 TnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~PE 239 (846)
|||||||||||||+||||+|++|+++||++++++.+...||||++|.||+|||||+++|+|||||++++|+.+++++.||
T Consensus 344 TNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PE 423 (1294)
T PRK11131 344 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPE 423 (1294)
T ss_pred ccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhH
Q 003111 240 ILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDA 319 (846)
Q Consensus 240 I~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~l 319 (846)
|+|++|+++||++|.+| ++++.. |+|+|||+.++|.+|++.|.++||||.+..++..+||++|+.|++||+||++
T Consensus 424 IlR~~L~~viL~lk~lg---l~di~~--F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrl 498 (1294)
T PRK11131 424 ILRTNLASVILQMTALG---LGDIAA--FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRL 498 (1294)
T ss_pred cccCCHHHHHHHHHHcC---CCCcce--eeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHH
Confidence 99999999999998654 455444 4899999999999999999999999863111123699999999999999999
Q ss_pred HHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhHHHHHHHHHHHh
Q 003111 320 SVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFK 399 (846)
Q Consensus 320 sk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf~~W~~~~~ 399 (846)
||||+.|..+||++|+++|||+||+++ ||.+|.+++++++..+.+|.+++|| |++++|+|+.|++..+
T Consensus 499 akmLl~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~f~~~~sD-----------~lt~ln~~~~~~~~~~ 566 (1294)
T PRK11131 499 ARMVLEAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRRFADKESD-----------FLAFVNLWNYLQEQQK 566 (1294)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997 9999999998899999999988886 9999999999986322
Q ss_pred hhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCC------------
Q 003111 400 DKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSN------------ 467 (846)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~------------ 467 (846)
.. ..+..++||++||||+.+|++|.+++.||.+++.++++...+..+
T Consensus 567 ~~---------------------s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G 625 (1294)
T PRK11131 567 AL---------------------SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTG 625 (1294)
T ss_pred hh---------------------cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhh
Confidence 11 134457899999999999999999999999999999876533110
Q ss_pred ---------CCCCCCCCcch----hh--hhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 468 ---------GLPTYYDPYEF----EH--TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 468 ---------~~p~~~~~~~~----~h--~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
....+|..... .| +++++..+.|++|++++.|+ +.|+|+|++
T Consensus 626 ~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~~Elv~Ts----r~y~r~va~ 682 (1294)
T PRK11131 626 LLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETS----RLWGRIAAR 682 (1294)
T ss_pred cHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEEEeeeccC----hhhhhhhcc
Confidence 00111221110 11 23666789999999999999 999999998
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.8e-70 Score=646.29 Aligned_cols=376 Identities=26% Similarity=0.302 Sum_probs=317.5
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|++||++ +|++.|+| |+|||+++|++... .++
T Consensus 201 mSATld~~rfs~~f~~------apvi~i~G----R~fPVei~Y~~~~~-----------------------~d~------ 241 (845)
T COG1643 201 MSATLDAERFSAYFGN------APVIEIEG----RTYPVEIRYLPEAE-----------------------ADY------ 241 (845)
T ss_pred EecccCHHHHHHHcCC------CCEEEecC----CccceEEEecCCCC-----------------------cch------
Confidence 9999999999999986 89999998 89999999987421 111
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC--CCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEE
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--LSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVI 157 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~--~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVI 157 (846)
.+.+.+ ..+.+++..++ .|+|||||||.+||+++++.|.. ....+.|+||||.|+.++|.++|++. .++||||
T Consensus 242 -~l~~ai-~~~v~~~~~~~--~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVV 317 (845)
T COG1643 242 -ILLDAI-VAAVDIHLREG--SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVV 317 (845)
T ss_pred -hHHHHH-HHHHHHhccCC--CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEE
Confidence 012223 34555666655 69999999999999999999986 33579999999999999999998765 5669999
Q ss_pred EecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccccccccccc
Q 003111 158 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHEC 237 (846)
Q Consensus 158 lATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~ 237 (846)
|||||||||||||||+||||+|++|+++||+.++++.|.++|||||+|.||+|||||+.||+|||||++++|..|++++.
T Consensus 318 lATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~ 397 (845)
T COG1643 318 LATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTL 397 (845)
T ss_pred EEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccch
Q 003111 238 PAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSF 317 (846)
Q Consensus 238 PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP 317 (846)
|||+|+||++++|+++.+| ++ .+...++|+|||+..++..|++.|..+||||.. | .||++|+.|+.||+||
T Consensus 398 PEIlrtdLs~~vL~l~~~G---~~-~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lpldp 468 (845)
T COG1643 398 PEILRTDLSGLVLQLKSLG---IG-QDIAPFPFLDPPPEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSLLPLDP 468 (845)
T ss_pred hhhhhcchHHHHHHHHhcC---CC-CCcccCccCCCCChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCCCCh
Confidence 9999999999999998765 32 133456999999999999999999999999984 5 5999999999999999
Q ss_pred hHHHHHHHhcccCcchhhHHhHhhhccCCC--cccCCCCchH---HHHHHh-cccCCCCCCcccccccchhhhhhhHHHH
Q 003111 318 DASVLVLKFGEIGMLREGILLGILMDTQPL--PILHPFGDDA---LFAEYT-GCYFGGDGNTRLLTGRKEMVIMGNLCAF 391 (846)
Q Consensus 318 ~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~--pf~~P~~~~~---~a~~~~-~~f~~~~gD~~~~~~~~~sd~l~~lnaf 391 (846)
++|+||+.|...||+.|+++||||||+++. .|..+.+.+. ..+..+ .++.. .. ....||+.++++|
T Consensus 469 rLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------~~~~d~~~ll~~~ 540 (845)
T COG1643 469 RLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN-AA-------DPRGDHLLLLEAF 540 (845)
T ss_pred HHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc-CC-------CcchHHHHHHHHH
Confidence 999999999999999999999999999871 3677766554 222222 22222 00 1134699999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Q 003111 392 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR 457 (846)
Q Consensus 392 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r 457 (846)
..|......++ ......||..++++.++|.++..++.+++..+.+
T Consensus 541 ~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~ 585 (845)
T COG1643 541 PDRIARKRAKG---------------------EYLRANGCRAMLFPTKALSRAPWIIAALLVQTSA 585 (845)
T ss_pred HHHHHhhhccc---------------------hhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhc
Confidence 99987543111 2346789999999999999999999999998877
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.7e-69 Score=661.13 Aligned_cols=428 Identities=20% Similarity=0.295 Sum_probs=355.7
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.+.|++||++ +|++.++| +.|||+++|..-. .+ + .+. .
T Consensus 217 mSATld~~~fa~~F~~------apvI~V~G----r~~PVev~Y~~~~-----------~~------------~-~~~--~ 260 (1283)
T TIGR01967 217 TSATIDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPLV-----------EE------------Q-EDD--D 260 (1283)
T ss_pred EeCCcCHHHHHHHhcC------CCEEEECC----CcccceeEEeccc-----------cc------------c-cch--h
Confidence 8999999999999964 68999998 8899999986410 00 0 000 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHHHHhhccCCCeEEEEe
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILA 159 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA 159 (846)
.+..+.+.+++..++... +|+|||||||..||+.+++.|.... ..+.+++|||+|+.++|..+++.. +.||||||
T Consensus 261 ~~~~~~i~~~I~~l~~~~---~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVLA 336 (1283)
T TIGR01967 261 LDQLEAILDAVDELFAEG---PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVLA 336 (1283)
T ss_pred hhHHHHHHHHHHHHHhhC---CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEEe
Confidence 123455667777776543 4899999999999999999997653 357899999999999999888765 45899999
Q ss_pred cCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccccccccccch
Q 003111 160 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPA 239 (846)
Q Consensus 160 TnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~PE 239 (846)
|||||||||||||+||||+|+.|.++||++++++.+.+.||||++|.||+|||||+++|+|||||++++|+.+++++.||
T Consensus 337 TNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PE 416 (1283)
T TIGR01967 337 TNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPE 416 (1283)
T ss_pred ccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCC-Ccccccccceecccccchh
Q 003111 240 ILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG-RYEPTFYGRLLASFSLSFD 318 (846)
Q Consensus 240 I~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g-~~~LT~LGr~ma~LPldP~ 318 (846)
|+|++|++++|++|.+| ++++..| +|+|||+..+|.+|++.|..+||||++ | ...||++|+.|+.||+||+
T Consensus 417 IlR~~L~~viL~l~~lg---~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~---~~~~~LT~lGr~ma~LPldPr 488 (1283)
T TIGR01967 417 ILRTNLASVILQMLALR---LGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDD---EAEPQLTPIGRQLAQLPVDPR 488 (1283)
T ss_pred cccccHHHHHHHHHhcC---CCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCC---CCCccccHHHHHHhhcCCChH
Confidence 99999999999998765 4444444 899999999999999999999999973 3 2369999999999999999
Q ss_pred HHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhHHHHHHHHHHH
Q 003111 319 ASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVF 398 (846)
Q Consensus 319 lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf~~W~~~~ 398 (846)
+||||+.|..+||++|+++|||+||+++ ||.+|.++++++++.+.+|.+++|| |++.+|+|+.|.+..
T Consensus 489 larmLl~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f~~~~sD-----------~l~~L~~~~~~~~~~ 556 (1283)
T TIGR01967 489 LARMLLEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARFKDPRSD-----------FLSRVNLWRHIEEQR 556 (1283)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 8999999999899999999877776 899999999997632
Q ss_pred hhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCC----------
Q 003111 399 KDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG---------- 468 (846)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~~---------- 468 (846)
... ..+..+.||++||||+.+|++|.+++.||.+++.++++...+....
T Consensus 557 ~~~---------------------~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~ 615 (1283)
T TIGR01967 557 QAL---------------------SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLS 615 (1283)
T ss_pred hhc---------------------cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHH
Confidence 210 1345678999999999999999999999999998887643221000
Q ss_pred ----------CCCCCCCcchh------hhhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 469 ----------LPTYYDPYEFE------HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 469 ----------~p~~~~~~~~~------h~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
....|...... .+++.+..+.|++|++++.++ +.|+|.|++
T Consensus 616 g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~----~~~ir~~a~ 672 (1283)
T TIGR01967 616 GLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAAELVETS----KLYARLVAK 672 (1283)
T ss_pred hhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEeeecccc----hheEeeecc
Confidence 00112111110 123555668999999999887 789999998
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-62 Score=554.81 Aligned_cols=367 Identities=24% Similarity=0.318 Sum_probs=298.3
Q ss_pred CCCCcChHHHH---HHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCcccc
Q 003111 1 MSATADITKYR---DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 77 (846)
Q Consensus 1 MSAT~d~~~f~---~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~ 77 (846)
||||+-++.|. +.|. .+.|+|.|+. |.|||.++|-. .+..||...
T Consensus 420 MSATLRVsDFtenk~LFp-----i~pPlikVdA----RQfPVsIHF~k-----------------------rT~~DYi~e 467 (1172)
T KOG0926|consen 420 MSATLRVSDFTENKRLFP-----IPPPLIKVDA----RQFPVSIHFNK-----------------------RTPDDYIAE 467 (1172)
T ss_pred EeeeEEecccccCceecC-----CCCceeeeec----ccCceEEEecc-----------------------CCCchHHHH
Confidence 99999999887 3443 4568999997 89999998633 111233222
Q ss_pred ccChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC--------------------------------
Q 003111 78 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------------- 125 (846)
Q Consensus 78 ~i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~-------------------------------- 125 (846)
..+-.+.||++-| +|+|||||+|+.|+++++..|+..
T Consensus 468 ---------AfrKtc~IH~kLP--~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k 536 (1172)
T KOG0926|consen 468 ---------AFRKTCKIHKKLP--PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNK 536 (1172)
T ss_pred ---------HHHHHHHHhhcCC--CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcc
Confidence 2366788999988 589999999999999888766200
Q ss_pred -----------------------------------------------------------------CCCcEEEEecCCccH
Q 003111 126 -----------------------------------------------------------------SSFFKVHILHSSVDT 140 (846)
Q Consensus 126 -----------------------------------------------------------------~~~~~v~~Lhs~l~~ 140 (846)
...+.|+||||-|+.
T Consensus 537 ~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~ 616 (1172)
T KOG0926|consen 537 TDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLST 616 (1172)
T ss_pred cccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCH
Confidence 014679999999999
Q ss_pred HHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCc
Q 003111 141 EQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 219 (846)
Q Consensus 141 ~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~ 219 (846)
+.|.++| +.++|.|-||||||+||||+|||||+||||||++|+..||..+|+++..+.|||||||.||+|||||++||+
T Consensus 617 ~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGH 696 (1172)
T KOG0926|consen 617 EKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGH 696 (1172)
T ss_pred HHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCc
Confidence 9988887 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccc-cccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCC
Q 003111 220 VYRLVTKSFFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPR 298 (846)
Q Consensus 220 c~rLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~ 298 (846)
|||||+...|+ .+.+++.|||++.|.++++|+||+ ++++++..|+|++||...++..|++.|..|||||.+
T Consensus 697 cYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs-----MnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~--- 768 (1172)
T KOG0926|consen 697 CYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS-----MNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSN--- 768 (1172)
T ss_pred eeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh-----cCccceecCCCCCCccHHHHHHHHHHHHHhcccccc---
Confidence 99999999997 799999999999999999999975 566788889999999999999999999999999984
Q ss_pred CCcccccccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccC-------C----CCchH----------
Q 003111 299 GRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILH-------P----FGDDA---------- 357 (846)
Q Consensus 299 g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~-------P----~~~~~---------- 357 (846)
| .||+||+.|+.|||.|++||||+.+.+.+|+-.++.++++||++. +|+. | +..++
T Consensus 769 g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e-~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~ 845 (1172)
T KOG0926|consen 769 G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE-VLIVAASLLPNPLIREFEPEEKDLIKDDETV 845 (1172)
T ss_pred C--CcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc-hhhhhhhcccccccccCCcchhhcccccccc
Confidence 5 699999999999999999999999999999999999999999876 4431 1 11111
Q ss_pred ----HHHH-------HhcccCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchh
Q 003111 358 ----LFAE-------YTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKI 426 (846)
Q Consensus 358 ----~a~~-------~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (846)
.... ++.+|...+ +|-|.++.|...... ...
T Consensus 846 ~d~~~K~~rr~~~~aa~~rf~~l~-----------sd~l~Ll~Av~a~ey---------------------------~~~ 887 (1172)
T KOG0926|consen 846 EDKELKKRRREKSKAARSRFSNLD-----------SDALVLLSAVSAAEY---------------------------AEN 887 (1172)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCC-----------ccHHHHHHHHHHHHh---------------------------hhh
Confidence 0111 112222222 233444444333222 123
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhC
Q 003111 427 EEEWCSLHYLVQSSLHHVSELYEDILNAVHRFR 459 (846)
Q Consensus 427 ~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~ 459 (846)
...||..|||..++|.+++++|.||..++.+..
T Consensus 888 ~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~ 920 (1172)
T KOG0926|consen 888 GMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGN 920 (1172)
T ss_pred cchhHHhcchHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345999999999999999999999999987443
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.5e-55 Score=527.49 Aligned_cols=292 Identities=28% Similarity=0.315 Sum_probs=256.8
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.+.|++||++ ++++.++| +.|||+++|++... .+
T Consensus 152 mSATl~~~~l~~~l~~------~~vI~~~g----r~~pVe~~y~~~~~-----------------------~~------- 191 (819)
T TIGR01970 152 MSATLDGERLSSLLPD------APVVESEG----RSFPVEIRYLPLRG-----------------------DQ------- 191 (819)
T ss_pred EeCCCCHHHHHHHcCC------CcEEEecC----cceeeeeEEeecch-----------------------hh-------
Confidence 8999999999999964 68899987 78999999875200 00
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEE
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKIC-KSHRKVIL 158 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~-~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIl 158 (846)
...+.+...+.++...+ +|+|||||||.+||+.+++.|... ..++.+++|||+|+.++|..+++.+ .|.|||||
T Consensus 192 -~~~~~v~~~l~~~l~~~---~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlV 267 (819)
T TIGR01970 192 -RLEDAVSRAVEHALASE---TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVL 267 (819)
T ss_pred -hHHHHHHHHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEE
Confidence 01122334455555443 489999999999999999998753 2468999999999999988888655 68899999
Q ss_pred ecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccccccccccc
Q 003111 159 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECP 238 (846)
Q Consensus 159 ATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~P 238 (846)
||||||||||||||+||||+|+.|.++||+.++++.|.++||||++|.||+|||||+++|+|||||+++.|..|.+++.|
T Consensus 268 ATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~P 347 (819)
T TIGR01970 268 ATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEP 347 (819)
T ss_pred ecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchh
Q 003111 239 AILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFD 318 (846)
Q Consensus 239 EI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~ 318 (846)
||+|++|++++|.+|.+| ++++..| +|+|||+..++..|++.|..+||||++ | +||++|+.|+.||+||+
T Consensus 348 EI~r~~L~~~~L~l~~~g---~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~ 417 (819)
T TIGR01970 348 EILQADLSGLALELAQWG---AKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPR 417 (819)
T ss_pred ceeccCcHHHHHHHHHcC---CCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHH
Confidence 999999999999999876 3444444 899999999999999999999999983 5 69999999999999999
Q ss_pred HHHHHHHhcccCcchhhHHhHhhhccCC
Q 003111 319 ASVLVLKFGEIGMLREGILLGILMDTQP 346 (846)
Q Consensus 319 lsk~LL~~~~~gCl~e~l~IaA~Lsv~~ 346 (846)
+|+||+.|..+||.+++++|||+|+.++
T Consensus 418 l~~~ll~~~~~~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 418 LAAMLLSAHSTGLAALACDLAALLEERG 445 (819)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999876
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-52 Score=504.53 Aligned_cols=290 Identities=24% Similarity=0.260 Sum_probs=248.9
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.+.|++||++ ++++.++| +.|||+++|++.. ..++
T Consensus 155 mSATl~~~~l~~~~~~------~~~I~~~g----r~~pV~~~y~~~~-----------------------~~~~------ 195 (812)
T PRK11664 155 MSATLDNDRLQQLLPD------APVIVSEG----RSFPVERRYQPLP-----------------------AHQR------ 195 (812)
T ss_pred EecCCCHHHHHHhcCC------CCEEEecC----ccccceEEeccCc-----------------------hhhh------
Confidence 8999999999999964 67889987 7899999987510 0000
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC-CCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEE
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVIL 158 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~-~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIl 158 (846)
..+.+...+.++...+ +|+|||||||..||+.+++.|.. ...++.+.+|||+|+.++|+.++..+ .|+|||||
T Consensus 196 --~~~~v~~~l~~~l~~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlv 270 (812)
T PRK11664 196 --FDEAVARATAELLRQE---SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVL 270 (812)
T ss_pred --HHHHHHHHHHHHHHhC---CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEE
Confidence 1112233444444433 48999999999999999999975 23468999999999999888877654 78899999
Q ss_pred ecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccccccccccc
Q 003111 159 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECP 238 (846)
Q Consensus 159 ATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~P 238 (846)
||||||+|||||||+||||+|+.|...||+.++++.|.+.||||++|.||+|||||+++|+|||||+++.|..|++++.|
T Consensus 271 ATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~P 350 (812)
T PRK11664 271 ATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEP 350 (812)
T ss_pred ecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchh
Q 003111 239 AILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFD 318 (846)
Q Consensus 239 EI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~ 318 (846)
||+|++|++++|.+|.+|. .++..| +|+|||+..++.+|++.|..+||||++ | +||++|+.|+.||+||+
T Consensus 351 EI~r~dL~~~~L~l~~~g~---~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Pr 420 (812)
T PRK11664 351 EILHSDLSGLLLELLQWGC---HDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPR 420 (812)
T ss_pred ceeccchHHHHHHHHHcCC---CCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchH
Confidence 9999999999999998763 344444 899999999999999999999999983 6 69999999999999999
Q ss_pred HHHHHHHhcccCcch--hhHHhHhhhcc
Q 003111 319 ASVLVLKFGEIGMLR--EGILLGILMDT 344 (846)
Q Consensus 319 lsk~LL~~~~~gCl~--e~l~IaA~Lsv 344 (846)
+|+|||.|..+||.. .++.++|+|+.
T Consensus 421 la~~ll~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 421 LAAMLVAAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 999999999998643 56666777653
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=3.5e-43 Score=402.66 Aligned_cols=404 Identities=23% Similarity=0.331 Sum_probs=324.5
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCccc-------------------
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSEL------------------- 61 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~------------------- 61 (846)
||||+|.++|.+||+. +|.+.++| |+|||..+|++|+...+....+-+++.
T Consensus 531 msatIdTd~f~~~f~~------~p~~~~~g----rt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSS------IPDVTVHG----RTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred hhcccchhhhhhhhcc------ccceeecc----ccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 8999999999999986 78888987 899999999999987665433222110
Q ss_pred ----ccccccCCCCCCccccccChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC-----CCCCcEEE
Q 003111 62 ----SSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-----LSSFFKVH 132 (846)
Q Consensus 62 ----~~~~y~~~~~~~~~~~~i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~-----~~~~~~v~ 132 (846)
....|+.....++.........++|+..++.+|.... .+|.|||||||+++|..++..|.. ....+.++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~--i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il 678 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRN--IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL 678 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccC--CccceeeecCchHHhhhhhhhhhhhhhhccchhcccc
Confidence 0111222111111111122234688877777776544 368999999999999998877753 34568899
Q ss_pred EecCCccHHHHHHHhhc-cCCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCC
Q 003111 133 ILHSSVDTEQALMAMKI-CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 211 (846)
Q Consensus 133 ~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GR 211 (846)
|+|+.++.++|.++++. +.+.+|||++|||||+|+||++|+||||++.++.+.|-....+....++|.||-+.+||+||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 99999998888888764 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEeecccccccccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCC
Q 003111 212 TGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRA 291 (846)
Q Consensus 212 aGR~~~G~c~rLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgA 291 (846)
+||+++|.||+|.++..|+.+..+-.|||.|.+|.++.|.+|.+ .++++..|+...+.||+.++|..+-..|.++++
T Consensus 759 ~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll---~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ 835 (1282)
T KOG0921|consen 759 AGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLL---RLGSIGEFLGKALQPPPYDAVIEAEAVLREMGA 835 (1282)
T ss_pred CceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHH---HhhhHHHHHhhccCCCchhhccCchHHHHHhhh
Confidence 99999999999999999999999999999999999999999863 467788999999999999999999999999999
Q ss_pred cccCCCCCCcccccccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCC-CchHHHHHHhcccCCCC
Q 003111 292 LQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGD 370 (846)
Q Consensus 292 Ld~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~-~~~~~a~~~~~~f~~~~ 370 (846)
+|.+ ..+|++|+.++++|+.|+++||++.+..+||..-++..|+.++... +|..-+ +...+ .-.+..
T Consensus 836 ld~n-----~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~-~~~~~~~~~~rl-~g~q~~----- 903 (1282)
T KOG0921|consen 836 LDAN-----DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPT-PFVPREKHHSRL-SGTQRK----- 903 (1282)
T ss_pred hhcc-----CcccchhhhhhhccCcccccceeeechhhccchhhhhhhccccccc-cccccccccccc-ccchhh-----
Confidence 9984 3799999999999999999999999999999999999998887543 443211 11110 111112
Q ss_pred CCcccccccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHH
Q 003111 371 GNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYED 450 (846)
Q Consensus 371 gD~~~~~~~~~sd~l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~Q 450 (846)
.+|++.+||.+...+-+.|.....+. ...+++||....|+.+.|....+.+.|
T Consensus 904 -----~~g~kfsdhva~~~v~q~~r~~~q~g----------------------a~~e~efc~r~~l~~~~~~~t~~a~~q 956 (1282)
T KOG0921|consen 904 -----FAGNKFSDHVAIVSVIQGYREAVQMG----------------------AAAEREFCERYSLSNPVLKMTDGARRQ 956 (1282)
T ss_pred -----ccccccccchhhhhhhhhhHHHhhhh----------------------hhhhhhHhHhhhhcchhhhhhhhhHHH
Confidence 33455677777777777777643321 235789999999999999999999999
Q ss_pred HHHHHHHh
Q 003111 451 ILNAVHRF 458 (846)
Q Consensus 451 L~~~l~r~ 458 (846)
|+.+|+..
T Consensus 957 l~d~L~q~ 964 (1282)
T KOG0921|consen 957 LIDVLRQC 964 (1282)
T ss_pred HHHHHHhc
Confidence 99999854
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5e-38 Score=372.13 Aligned_cols=260 Identities=20% Similarity=0.238 Sum_probs=197.3
Q ss_pred CCCCc--ChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccc
Q 003111 1 MSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 78 (846)
Q Consensus 1 MSAT~--d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~ 78 (846)
||||+ |++.|++||++ ++++.+||+ ..|||+++|+++... +.. ..++.+.
T Consensus 327 mSATl~~dv~~l~~~~~~------p~~I~I~gr---t~~pV~~~yi~~~~~----------~~~--------~~~y~~~- 378 (675)
T PHA02653 327 MTATLEDDRDRIKEFFPN------PAFVHIPGG---TLFPISEVYVKNKYN----------PKN--------KRAYIEE- 378 (675)
T ss_pred EccCCcHhHHHHHHHhcC------CcEEEeCCC---cCCCeEEEEeecCcc----------ccc--------chhhhHH-
Confidence 89999 57799999964 678999972 359999999874210 000 0000000
Q ss_pred cChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhc-cCCCeEEE
Q 003111 79 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI-CKSHRKVI 157 (846)
Q Consensus 79 i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVI 157 (846)
+ ...+...+ ....+..+|++|||+||.++++.+.+.|....+++.+.+|||+|++.++. ..+. ..|++|||
T Consensus 379 ---~-k~~~l~~L---~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~-l~~ff~~gk~kIL 450 (675)
T PHA02653 379 ---E-KKNIVTAL---KKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEI-LEKVYSSKNPSII 450 (675)
T ss_pred ---H-HHHHHHHH---HHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHH-HHHHhccCceeEE
Confidence 0 01111222 21112224799999999999999999997654458999999999976431 1122 35789999
Q ss_pred EecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccccccccccc
Q 003111 158 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHEC 237 (846)
Q Consensus 158 lATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~l~~~~~ 237 (846)
|||||||+|||||||++|||+|+++.+. +..+. ..|||++++.||+|||||+++|.|||||+++.+ .
T Consensus 451 VATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~ 517 (675)
T PHA02653 451 ISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------K 517 (675)
T ss_pred eccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------H
Confidence 9999999999999999999999987653 44443 469999999999999999999999999999864 2
Q ss_pred chhhhhh---hHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccc--cceecc
Q 003111 238 PAILRLS---LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFY--GRLLAS 312 (846)
Q Consensus 238 PEI~r~~---L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~L--Gr~ma~ 312 (846)
| |+|.+ |.++||.+|.||. +.+.. .|+|||+++++.+|++.|..+||+|+ +||.+ |+.|+.
T Consensus 518 p-I~ri~~~~L~~~vL~lk~~g~---~~~~~---~~ldpP~~~~l~~A~~~L~~lga~~~-------~l~~l~~~~~~~~ 583 (675)
T PHA02653 518 P-IKRIDSEFLHNYILYAKYFNL---TLPED---LFVIPSNLDRLRKTEEYIDSFNISIE-------KWYEILSNYYVNM 583 (675)
T ss_pred H-HHHHhHHHHHHHHHHHHHcCC---CCccc---ccCCCCCHHHHHHHHHHHHHcCCCch-------hhhhhhccccHHH
Confidence 3 66655 8899999998873 33332 38999999999999999999999875 59999 999999
Q ss_pred cccchhHHHHHHHhc
Q 003111 313 FSLSFDASVLVLKFG 327 (846)
Q Consensus 313 LPldP~lsk~LL~~~ 327 (846)
+ +.||+++.|+
T Consensus 584 ~----~~~k~~~~g~ 594 (675)
T PHA02653 584 L----EYAKIYVKGG 594 (675)
T ss_pred H----HHhHHHhccc
Confidence 9 8999988763
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=99.77 E-value=2.5e-18 Score=207.59 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=146.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCC-----------------------CcEEEEecCCccHHHHHHHhhcc-CCCeEEE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSS-----------------------FFKVHILHSSVDTEQALMAMKIC-KSHRKVI 157 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~-----------------------~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVI 157 (846)
+|.+|||+|+..+++.++..|..... ...|..+||+|+.+++..+.+.+ .|..||+
T Consensus 236 ~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VL 315 (674)
T PRK01172 236 GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVI 315 (674)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 46899999999999988877643211 12467789999999998888765 6889999
Q ss_pred EecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEee-cccccc---
Q 003111 158 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLV-TKSFFG--- 230 (846)
Q Consensus 158 lATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLy-t~~~~~--- 230 (846)
|||+++++|++||+..+||+. ...|+. ....++|.+++.||+|||||.+ .|.++.+. +.+.++
T Consensus 316 vaT~~la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~ 385 (674)
T PRK01172 316 VATPTLAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK 385 (674)
T ss_pred EecchhhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHH
Confidence 999999999999999999862 123432 2335799999999999999987 47766653 333232
Q ss_pred c-cccccc--------chhhhhhhHHHHHHHhhhhcccCCChhhhh-cccc--CCCC---hhhHHHHHHHHHhcCCcccC
Q 003111 231 T-LEDHEC--------PAILRLSLRLQVLLICCAESKAISDPKVLL-QKAL--DPPY---PEVVGDALDLLDHKRALQKI 295 (846)
Q Consensus 231 ~-l~~~~~--------PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l-~~~i--dpP~---~~~I~~Al~~L~~LgALd~~ 295 (846)
. +...+. +++.+.++-..+..... .+..+...|+ ..|+ ++++ .+.|+.|++.|.+.|+|+.+
T Consensus 386 ~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~---~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~ 462 (674)
T PRK01172 386 KYLSGEPEPVISYMGSQRKVRFNTLAAISMGLA---SSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGD 462 (674)
T ss_pred HHHcCCCCceeecCCCcccHHHHHHHHHHhccc---CCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccC
Confidence 2 212222 23444443222222110 1112222232 1222 3322 56799999999999999863
Q ss_pred CCCCCcccccccceecccccchhHHHHHHHhccc
Q 003111 296 SPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI 329 (846)
Q Consensus 296 ~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~ 329 (846)
+.+.+|++|+.++.+|++|..++.++.+..-
T Consensus 463 ---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 463 ---VTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred ---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 4467999999999999999999998877654
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=99.63 E-value=3.9e-14 Score=172.85 Aligned_cols=215 Identities=18% Similarity=0.146 Sum_probs=150.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCC----------------------------------CcEEEEecCCccHHHHHHHh
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSS----------------------------------FFKVHILHSSVDTEQALMAM 147 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~----------------------------------~~~v~~Lhs~l~~~~~~~~~ 147 (846)
++.+|||+|+..+++.++..|..... ...|..+||+|+.++++.+.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 36799999999998877666532110 13577889999999999888
Q ss_pred hcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcEEEe
Q 003111 148 KIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQVYRL 223 (846)
Q Consensus 148 ~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c~rL 223 (846)
+.+ .|..+|++||++++.||++|++.+||+. ..+||+..+ ..++|.++..||+|||||.+- |.|+-+
T Consensus 323 ~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~ 393 (737)
T PRK02362 323 DAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLL 393 (737)
T ss_pred HHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEE
Confidence 766 7889999999999999999999999964 346876543 268999999999999999763 999999
Q ss_pred ecccc-----cccccccccchhhh------hhhHHHHHHHhhhhc-ccCCChhhhh-ccccCCCC------hhhHHHHHH
Q 003111 224 VTKSF-----FGTLEDHECPAILR------LSLRLQVLLICCAES-KAISDPKVLL-QKALDPPY------PEVVGDALD 284 (846)
Q Consensus 224 yt~~~-----~~~l~~~~~PEI~r------~~L~~~vL~lk~~~~-~~l~~~~~~l-~~~idpP~------~~~I~~Al~ 284 (846)
..... |+.+-. ..||-.. ..|...+|...+.+. ....+...++ ..|+..+. .+.++.+++
T Consensus 394 ~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~ 472 (737)
T PRK02362 394 AKSYDELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLD 472 (737)
T ss_pred ecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHH
Confidence 86531 222111 1122111 134444554433331 1111222222 22333332 245899999
Q ss_pred HHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcc
Q 003111 285 LLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 328 (846)
Q Consensus 285 ~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~ 328 (846)
.|.+.|+|+.+. +.+.+|++|+.++.++++|..+..+..+..
T Consensus 473 ~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 473 FLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 999999998631 346799999999999999999998877654
No 16
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.52 E-value=1.3e-14 Score=134.17 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHH
Q 003111 281 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFA 360 (846)
Q Consensus 281 ~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~ 360 (846)
+|++.|+.+||||++ | +||++|+.|+.||++|++||||+.+..+||++++++|+|+|++++ +|..|.++++..+
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~-~f~~~~~~~~~~~ 74 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRS-PFINPDDKEENAE 74 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS---B---CCGHHHHH
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCC-cccCccHHHHHHH
Confidence 488999999999873 5 799999999999999999999999999999999999999999955 8998876554333
Q ss_pred --HHhcccCCCCCCcccccccchhhhhhhH
Q 003111 361 --EYTGCYFGGDGNTRLLTGRKEMVIMGNL 388 (846)
Q Consensus 361 --~~~~~f~~~~gD~~~~~~~~~sd~l~~l 388 (846)
..+.+|..... ....++..+||+++|
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 75 QDNAKKKFRIKQA--RKKFSDDESDHLTLL 102 (102)
T ss_dssp H--HHHTT------------BTTBHHHHHH
T ss_pred HHHHHHHhhhhhc--ccccCCCCCCHHhcC
Confidence 23444411110 111233456788764
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=99.50 E-value=7e-13 Score=161.54 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=139.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC-----------------------C--------CCcEEEEecCCccHHHHHHHhhcc-
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL-----------------------S--------SFFKVHILHSSVDTEQALMAMKIC- 150 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~-----------------------~--------~~~~v~~Lhs~l~~~~~~~~~~~~- 150 (846)
+.+|||++++.+.+.++..|... . -...|..+||+|+.+++..+.+.+
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~ 318 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR 318 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH
Confidence 56999999998877655433110 0 013488999999999998887765
Q ss_pred CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeeccc
Q 003111 151 KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS 227 (846)
Q Consensus 151 ~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~~ 227 (846)
.|..||+|||++++.||+||++.+||... ..|+ .. ...+++.++..||+|||||.+ .|.++-+.+.+
T Consensus 319 ~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~-----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 319 EGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NF-----GWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CC-----CceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 78899999999999999999999999543 3343 11 234567788999999999964 49999887643
Q ss_pred c----cccc---------cccccchhhhhhhHHHHHHHhhhhcccCCChh---hhhc---cccCCCC----hhhHHHHHH
Q 003111 228 F----FGTL---------EDHECPAILRLSLRLQVLLICCAESKAISDPK---VLLQ---KALDPPY----PEVVGDALD 284 (846)
Q Consensus 228 ~----~~~l---------~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~---~~l~---~~idpP~----~~~I~~Al~ 284 (846)
. ++.+ ...+.++.++. .+|.....+ .+.+.. .++. .+...|+ .+.+..+++
T Consensus 389 ~~~~~~~~~~~~~pe~l~s~l~~es~l~~----~ll~~i~~~--~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~ 462 (720)
T PRK00254 389 EPSKLMERYIFGKPEKLFSMLSNESAFRS----QVLALITNF--GVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVY 462 (720)
T ss_pred chHHHHHHHHhCCchhhhccCCchHHHHH----HHHHHHHhC--CCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHH
Confidence 2 2221 12223333333 333332222 122211 1221 1222244 245788899
Q ss_pred HHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhc
Q 003111 285 LLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFG 327 (846)
Q Consensus 285 ~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~ 327 (846)
.|.+.|.|+. +.++.+..|++|+.++.++++|..++.+..+.
T Consensus 463 ~L~~~~~i~~-~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l 504 (720)
T PRK00254 463 FLLENEFIDI-DLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAF 504 (720)
T ss_pred HHHHCCCeEE-cCCCCEeeChHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999875 22255778999999999999999998876554
No 18
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.42 E-value=2.8e-14 Score=166.29 Aligned_cols=391 Identities=7% Similarity=-0.154 Sum_probs=264.5
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcC-----CC-----CCCcccccccccCCC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGV-----DH-----GMTSELSSLRYCSGP 70 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~-----~~-----~~~~e~~~~~y~~~~ 70 (846)
|++|.++..|--||- .+++..+|+ +++|++.++.++-.+...- +. .+........|....
T Consensus 553 ~grt~pvq~F~led~------~~~~~~vp~----~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se 622 (1282)
T KOG0921|consen 553 HGRTFPVQSFFLEDI------IQMTQFVPS----EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSE 622 (1282)
T ss_pred ccccccHHHHHHHHh------hhhhhccCC----CcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchh
Confidence 799999999988773 378899998 7889988876653322211 11 111111111111111
Q ss_pred CCCccccccChhHHHH------HHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC----CCCcEEEEecCCccH
Q 003111 71 SPSMANAEIKPEVHKL------IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSSVDT 140 (846)
Q Consensus 71 ~~~~~~~~i~~~~~~l------i~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~----~~~~~v~~Lhs~l~~ 140 (846)
..+..++.+. +..+.-.|..-.+ ++++|+|||++--+-+....+... .....+.++|+.+..
T Consensus 623 ------~d~~f~l~Eal~~~i~s~~i~gailvflp--gwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 623 ------KDIPFGLIEALLNDIASRNIDGAVLVFLP--GWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred ------hcchhHHHHHHHhhhcccCCccceeeecC--chHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 1111111111 1111122222233 589999999997666655444321 112567888999988
Q ss_pred HHHHHHhhc-cCCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCc
Q 003111 141 EQALMAMKI-CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 219 (846)
Q Consensus 141 ~~~~~~~~~-~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~ 219 (846)
.+++.+.++ ..+.++++..|+++|++|++..+.+|+|++-.+.+.+-....++...++|-++-..+||.|+|+|.++|.
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~a 774 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRA 774 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHH
Confidence 888766654 5778999999999999999999999999999999888777888888899999999999999999999999
Q ss_pred EEEeecccccccccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCC
Q 003111 220 VYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG 299 (846)
Q Consensus 220 c~rLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g 299 (846)
||.+.....+..|-.++.|||-++.+....+.++.+-.++++- +..+.+.+|+......+.-.+.+.-+. .|
T Consensus 775 rF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~---~p~dav~e~e~~l~~m~~ld~n~elt~-----lg 846 (1282)
T KOG0921|consen 775 RFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQP---PPYDAVIEAEAVLREMGALDANDELTP-----LG 846 (1282)
T ss_pred HHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCC---CchhhccCchHHHHHhhhhhccCcccc-----hh
Confidence 9999999999999999999999998877777666544455543 345777777766655444333333332 25
Q ss_pred CcccccccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCccccccc
Q 003111 300 RYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGR 379 (846)
Q Consensus 300 ~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~ 379 (846)
+..+|.+|+.....|+.|..+++....+.+=..+-...+++ .+..+-++. -.+++. .-+..+|.+ +
T Consensus 847 ~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~-~~~~~~~~r-l~g~q~--~~~g~kfsd----------h 912 (1282)
T KOG0921|consen 847 RMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPF-VPREKHHSR-LSGTQR--KFAGNKFSD----------H 912 (1282)
T ss_pred hhhhhccCcccccceeeechhhccchhhhhhhccccccccc-ccccccccc-cccchh--hcccccccc----------c
Confidence 66789999999999999999887655443322222222222 222221222 123332 223445542 2
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 003111 380 KEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAV 455 (846)
Q Consensus 380 ~~sd~l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l 455 (846)
..+++.+.+-.++.|...... ......+|-.+-++.-+++.-+++..||. ++
T Consensus 913 va~~~v~q~~r~~~q~ga~~e-----------------------~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~ 964 (1282)
T KOG0921|consen 913 VAIVSVIQGYREAVQMGAAAE-----------------------REFCERYSLSNPVLKMTDGARRQLIDVLR-QC 964 (1282)
T ss_pred hhhhhhhhhhHHHhhhhhhhh-----------------------hhHhHhhhhcchhhhhhhhhHHHHHHHHH-hc
Confidence 357788888899999987443 34577889999999999999999998888 55
No 19
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.40 E-value=2e-13 Score=123.30 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhccc-CcchhhHHhHhhhccCCCcccCCCCchHHH
Q 003111 281 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI-GMLREGILLGILMDTQPLPILHPFGDDALF 359 (846)
Q Consensus 281 ~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~-gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a 359 (846)
+|++.|+.+||||.+ | +||++|+.|+.||+||++||||+.+..+ +|.+++++|+|++++.+ +|..| .++...
T Consensus 1 ~A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHH
Confidence 378999999999983 5 6999999999999999999999999999 89999999999999876 67666 344445
Q ss_pred HHHhcccCCC-CCC
Q 003111 360 AEYTGCYFGG-DGN 372 (846)
Q Consensus 360 ~~~~~~f~~~-~gD 372 (846)
...+..|.++ .||
T Consensus 74 ~~~~~~~~~~~~~D 87 (92)
T smart00847 74 DAARRRFASGRESD 87 (92)
T ss_pred HHHHHHccCCCCCC
Confidence 5556666665 565
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.29 E-value=9.6e-12 Score=144.06 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
.+.++..... ++.+|||+++..+++.+.+.|...+ +.+..+||+|++.+++.+++.+ .|..+|+|||+++|+||+
T Consensus 232 ~l~~ll~~~~--~~~~lVF~~t~~~~~~l~~~L~~~~--~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiD 307 (460)
T PRK11776 232 ALQRLLLHHQ--PESCVVFCNTKKECQEVADALNAQG--FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLD 307 (460)
T ss_pred HHHHHHHhcC--CCceEEEECCHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccc
Confidence 3444444433 3579999999999999999997654 7899999999999988887765 678999999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
||+|.+||+.++. -+..+..||.||+||.+ .|.||.|++..+
T Consensus 308 i~~v~~VI~~d~p------------------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 308 IKALEAVINYELA------------------RDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred hhcCCeEEEecCC------------------CCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 9999999986542 24567789999999987 499999998753
No 21
>PTZ00110 helicase; Provisional
Probab=99.22 E-value=4.3e-11 Score=141.45 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=92.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++..+++.+.+.|...+ +.+..+||+++++++..+++.+ .|..+|+|||++|+++|+||+|.+||+.
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g--~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~-- 452 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDG--WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINF-- 452 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcC--CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEe--
Confidence 3579999999999999999997543 7789999999999998887665 6788999999999999999999999984
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
|.. -+..+..||+||+||.+ .|.||.+++++.
T Consensus 453 ------d~P----------~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 453 ------DFP----------NQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred ------CCC----------CCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 432 25678899999999986 599999999854
No 22
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.21 E-value=6.1e-11 Score=136.01 Aligned_cols=124 Identities=20% Similarity=0.332 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCC
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNI 162 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnI 162 (846)
...+.+++..+. .++ +|-||||+-+..+++++...+.... +.+..|||.+++++++.+++.+ +|...|+||||+
T Consensus 326 ~~~l~~lL~~~~-~~~--~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV 400 (519)
T KOG0331|consen 326 LRKLGKLLEDIS-SDS--EGKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV 400 (519)
T ss_pred HHHHHHHHHHHh-ccC--CCcEEEEecchhhHHHHHHHHHhcC--cceeeecccccHHHHHHHHHhcccCCcceEEEccc
Confidence 345556666665 222 5789999999999999999887644 8899999999999999998866 889999999999
Q ss_pred CccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 163 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 163 AEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
|.++|.||+|++||+ ||+-.++ ....+|.||+||.+ .|..|-+++...+.
T Consensus 401 AaRGLDi~dV~lVIn--------ydfP~~v----------EdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 401 AARGLDVPDVDLVIN--------YDFPNNV----------EDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ccccCCCccccEEEe--------CCCCCCH----------HHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 999999999999997 7777654 46779999999954 59999999987653
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.21 E-value=3.7e-11 Score=137.70 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
++..+..... .+.+|||+++..+++.+...|...+ +.+..+||+|+.+++..+++.+ .|..+|+||||+++.||+
T Consensus 245 ~l~~ll~~~~--~~~~lVF~~t~~~~~~l~~~L~~~g--~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiD 320 (423)
T PRK04837 245 LLQTLIEEEW--PDRAIIFANTKHRCEEIWGHLAADG--HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLH 320 (423)
T ss_pred HHHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhCC--CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCC
Confidence 3444444332 3579999999999999999997654 7899999999999988887665 788999999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
||+|.+||+ ||.. -|..+..||+||+||.+ .|.++-|+++++
T Consensus 321 ip~v~~VI~--------~d~P----------~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 321 IPAVTHVFN--------YDLP----------DDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred ccccCEEEE--------eCCC----------CchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 999999997 4432 25566779999999987 499999988753
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.19 E-value=8.3e-11 Score=136.91 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=92.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++.++++.+...|...+ +.+..+||+++.+++..+++.+ .|..+||||||++|.||+||+|.+||+.|+
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~- 412 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLVKDG--INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL- 412 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC-
Confidence 579999999999999999886554 7788999999999988887665 788999999999999999999999998553
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
|-|.++..||+|||||.+. |.++.+++++
T Consensus 413 -----------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 413 -----------------PEDPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred -----------------CCCHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 3378899999999999874 9999999875
No 25
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.5e-10 Score=124.50 Aligned_cols=173 Identities=18% Similarity=0.283 Sum_probs=118.9
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceec-hhHHHHHHhcCCCCCCcccccccccCCCCCCcccccc
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 79 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~-YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i 79 (846)
||||..-+.-++--.+ ....+.+|.|.|++..||+.+ |...--..+ ...-+
T Consensus 239 lTATp~k~l~r~~~~g-----~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l-----------------------~r~kl 290 (441)
T COG4098 239 LTATPTKKLERKILKG-----NLRILKLPARFHGKPLPVPKFVWIGNWNKKL-----------------------QRNKL 290 (441)
T ss_pred EecCChHHHHHHhhhC-----CeeEeecchhhcCCCCCCCceEEeccHHHHh-----------------------hhccC
Confidence 6788777666665542 356789999999999999886 222111000 00111
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEe
Q 003111 80 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA 159 (846)
Q Consensus 80 ~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA 159 (846)
.+. +...+.+-+++ +--+|||+|+.+-.+++...|+...+...+...||. ++...+++....+|..+|+++
T Consensus 291 ~~k----l~~~lekq~~~----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~EkV~~fR~G~~~lLiT 361 (441)
T COG4098 291 PLK----LKRWLEKQRKT----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEKVEAFRDGKITLLIT 361 (441)
T ss_pred CHH----HHHHHHHHHhc----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHHHHHHHcCceEEEEE
Confidence 111 12223222222 235999999999999999999666566777888887 555556665667899999999
Q ss_pred cCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcE-EEeecc
Q 003111 160 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQV-YRLVTK 226 (846)
Q Consensus 160 TnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c-~rLyt~ 226 (846)
|.|+|+++|+|+|+++| .++..++. |+++..|.+||+||.-. |.. |.=|..
T Consensus 362 TTILERGVTfp~vdV~V---------lgaeh~vf-------TesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 362 TTILERGVTFPNVDVFV---------LGAEHRVF-------TESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred eehhhcccccccceEEE---------ecCCcccc-------cHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 99999999999999777 45555554 89999999999999763 654 443444
No 26
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.16 E-value=2e-10 Score=142.11 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=91.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|.++||.|+.++++.+...|....+++.+..+||+|+.+++..++..+ .|..+|+|||+|+|+||+||+|..||-
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--- 736 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--- 736 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE---
Confidence 3679999999999999999888765668999999999999988887655 788999999999999999999999983
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
||+... +-++..||+||+||.+ .|.||-|++..
T Consensus 737 -----~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 -----ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -----ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 344321 2346789999999977 59999998763
No 27
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.16 E-value=1.1e-10 Score=139.66 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=94.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.++..|...+ +.+..+||+|+.+++..+++.+ .+..+|||||++++.||++|+|++||+.+.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~g--~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSRG--ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCC--CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 3579999999999999999997654 7899999999999988887766 677899999999999999999999997443
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|-|..+..||+|||||.+ +|.|+-||+..++
T Consensus 314 ------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 314 ------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred ------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 237788999999999987 5999999998664
No 28
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=1.4e-10 Score=134.78 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=92.3
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
...|||+++..+++.+...|...+ +.+..+||+|+.+++..+.+.+ .|..+|||||++++.||++|+|++||..+..
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g--~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLG--IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcC--CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 356999999999999999997654 7889999999999988887655 6788999999999999999999999975432
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
-|..+..||.|||||.+ +|.|+-+|+..+.
T Consensus 305 ------------------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 305 ------------------KSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred ------------------CCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 26778999999999987 5999999998654
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.15 E-value=1.7e-10 Score=132.65 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+++.++..... .+.+|||+++.++++.++..|...+ +.+..+||+|+.+++..++..+ .|..+|+|||++++.+|
T Consensus 234 ~~l~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 234 ALLCHLLKQPE--VTRSIVFVRTRERVHELAGWLRKAG--INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHHhcCC--CCeEEEEeCChHHHHHHHHHHHhCC--CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 45555655433 3679999999999999999997643 7899999999999988877655 78899999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
.||+|.+||+.+. |.|.....||.||+||.+ .|.++.|++..++
T Consensus 310 Dip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 310 DIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred cCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 9999999997432 336678899999999976 4999999876544
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.15 E-value=1e-10 Score=132.57 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=96.6
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+.+..+..... .+.+|||+++..+++.+...|... .+.+..+||+++.+++..+++.+ .|..+|+|||++++.||
T Consensus 256 ~~l~~~~~~~~--~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~Gi 331 (401)
T PTZ00424 256 DTLCDLYETLT--ITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGI 331 (401)
T ss_pred HHHHHHHHhcC--CCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCc
Confidence 33444444332 246999999999999999988764 37899999999999988877654 68899999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
+||+|.+||+.+. +.|.++..||+|||||.+ .|.|+.|++++..
T Consensus 332 Dip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 332 DVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred CcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 9999999997432 337788889999999976 5999999988654
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.12 E-value=2.3e-10 Score=132.53 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=94.7
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
++.++..... ...+|||+++..+++.+++.|...+ +.+..+||+++.+++..++..+ .|..+|+|||++++.+|+
T Consensus 235 ~l~~l~~~~~--~~~~lVF~~t~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiD 310 (456)
T PRK10590 235 LLSQMIGKGN--WQQVLVFTRTKHGANHLAEQLNKDG--IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLD 310 (456)
T ss_pred HHHHHHHcCC--CCcEEEEcCcHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCC
Confidence 3444444332 3579999999999999999997654 7889999999999988887655 678899999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSF 228 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~ 228 (846)
||+|.+||+.++ . -+..+..||.||+||.+. |.|+-|++.++
T Consensus 311 ip~v~~VI~~~~--------P----------~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 311 IEELPHVVNYEL--------P----------NVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred cccCCEEEEeCC--------C----------CCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 999999997432 2 245678899999999774 99999988643
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.12 E-value=2.5e-10 Score=134.32 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=91.4
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++..+++.+...|... ..+.+..+||+++.+++..+++.+ .|..+|+|||++++.||+||+|++||.
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~---- 442 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII---- 442 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----
Confidence 46999999999999998888643 237889999999999998887665 788899999999999999999999996
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
||. |.|..+..||+|||||.+ .|.++.+++.+.
T Consensus 443 ----~d~----------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 443 ----FDM----------PNTIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred ----eCC----------CCCHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 443 336788999999999987 499999998754
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.11 E-value=3e-10 Score=135.02 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=91.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++...++.+.+.|...+ +.+..+||+|+.+++..+++.+ .+..+|+|||+++|.+|+||+|.+||+.
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~g--~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIny-- 332 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERHG--YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNY-- 332 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEc--
Confidence 3579999999999999999997654 7899999999999988887766 6788999999999999999999999974
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|. |.|..+..||.||+||.+ .|.|+.|++..
T Consensus 333 ------d~----------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 333 ------DL----------PFDAEDYVHRIGRTARLGEEGDAISFACER 364 (572)
T ss_pred ------CC----------CCCHHHHhhhhcccccCCCCceEEEEecHH
Confidence 32 346778899999999986 49999998764
No 34
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.07 E-value=1.1e-09 Score=132.74 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=84.3
Q ss_pred cceEEEcCcHH--------HHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeE
Q 003111 103 KSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~--------eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~ 173 (846)
+.++||.|..+ .++...+.|....+.+.+..+||+|+.++++.+++.+ .|..+|+|||+++|.||+||++.
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~ 551 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNAT 551 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCc
Confidence 47999999654 3445556665544447899999999999998887665 67889999999999999999999
Q ss_pred EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeec
Q 003111 174 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 225 (846)
Q Consensus 174 yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt 225 (846)
+||. ||+... +-++..||+||+||.+ +|.||-+++
T Consensus 552 ~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 552 VMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9994 454321 2467889999999987 599999986
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.06 E-value=1.2e-09 Score=131.38 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=84.9
Q ss_pred cceEEEcCcHH--------HHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeE
Q 003111 103 KSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~--------eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~ 173 (846)
+.++||.|..+ .++.+++.|.....++.+..+||+|+.+++..+++.+ .|..+|+|||+++|.||+||++.
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 46999999763 3445666665544568899999999999988887765 67899999999999999999999
Q ss_pred EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeec
Q 003111 174 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 225 (846)
Q Consensus 174 yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt 225 (846)
+||- ||+... +-++..||+||+||.+ +|.||.++.
T Consensus 529 ~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 529 VMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9984 444321 3468899999999976 699999984
No 36
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.05 E-value=8e-10 Score=139.49 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=89.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|.++||+++.++++.+.+.|....+++.+..+||+|+.+++..++..+ .|+.+|+|||+|+|+||+||+|.+||=
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--- 885 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--- 885 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE---
Confidence 3679999999999999999988765568899999999999988887655 688999999999999999999999981
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
+++.+. +-++..||+||+||.+. |.||-+++.
T Consensus 886 -----~~ad~f---------glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 886 -----ERADHF---------GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -----ecCCCC---------CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 122211 12568899999999874 999988765
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.05 E-value=6.6e-10 Score=136.74 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=93.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+..|||+.+..+++.++..|...+ +.+..+||+|+.+++..+.+.+ .|..+|||||++++.||.+|+|++||..++.
T Consensus 681 esgIIYC~SRke~E~LAe~L~~~G--ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQEFG--HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHHHCC--CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 467999999999999999997654 7899999999999998888766 6778999999999999999999999975442
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
-|-.+..||.|||||.+ +|.|+-||+..++.
T Consensus 759 ------------------kSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 759 ------------------KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ------------------CCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 25667889999999977 69999999886653
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.03 E-value=1e-09 Score=131.66 Aligned_cols=105 Identities=16% Similarity=0.324 Sum_probs=90.9
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..+|||+++..+++.+...|...+ +.+..+||+|++.++..+++.+ .+..+|+|||++++.+|+||+|.+||+
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g--~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~---- 319 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNG--YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN---- 319 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCC--CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----
Confidence 479999999999999999997654 7899999999999988887655 678999999999999999999999997
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
||. |.+-.+..||.||+||.+. |.++-+++..
T Consensus 320 ----~d~----------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 320 ----YDI----------PMDSESYVHRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred ----eCC----------CCCHHHHHHHhccccCCCCcceEEEEechH
Confidence 443 2366788999999999875 9999998764
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.02 E-value=1.1e-09 Score=131.03 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=92.3
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+..|||+++..+++.++..|...+ +.+..+||+|+.+++..+.+.+ .|..+|||||++++.||.+|+|++||+.+.
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g--~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~- 301 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQG--ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM- 301 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCC--CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC-
Confidence 568999999999999999997644 7789999999999988887655 677899999999999999999999997543
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|-|..+..||+|||||.+ +|.|+.+|+..+.
T Consensus 302 -----------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 302 -----------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred -----------------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 236678889999999977 6999999998765
No 40
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.7e-09 Score=126.96 Aligned_cols=116 Identities=30% Similarity=0.471 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+++.++..... .+.+|||+.+...++.+...|...+ +.+..|||+|+++++..++..| .|..+|+|||+||.++|
T Consensus 262 ~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g--~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 262 ELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRG--FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCC--CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 56666666654 3479999999999999999998766 8999999999999998887766 68889999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
.||+|.+||+ ||... +.....+|.||+||.+. |..+.|+++
T Consensus 338 Di~~v~~Vin--------yD~p~----------~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 338 DIPDVSHVIN--------YDLPL----------DPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred CccccceeEE--------ccCCC----------CHHHheeccCccccCCCCCeEEEEeCc
Confidence 9999999997 66553 44566689999999864 999999986
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.97 E-value=4.8e-09 Score=130.38 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=84.4
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCC----CCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEe
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLS----SFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVID 177 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~----~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVID 177 (846)
+.+|||+++...++.++..|.... ....+..+||+|+.+++..+.+.+ .|..+|||||+++|.||+||+|++||.
T Consensus 285 ~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~ 364 (876)
T PRK13767 285 RTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL 364 (876)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE
Confidence 469999999999999888886532 135788999999999998887665 688899999999999999999999995
Q ss_pred CCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC----CCcEEEe
Q 003111 178 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRL 223 (846)
Q Consensus 178 sG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~----~G~c~rL 223 (846)
. ++ |-|.++..||+|||||.. .|.++-+
T Consensus 365 ~--------~~----------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 365 L--------GS----------PKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred e--------CC----------CCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 3 32 237789999999999853 2666654
No 42
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.97 E-value=6.1e-09 Score=118.23 Aligned_cols=218 Identities=18% Similarity=0.197 Sum_probs=150.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.|..+||-.++.....++..|...+ ++.-|+|++|+..+++.+...| .+..-+||+|.....++.+|.-++|.+|
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG--~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs-- 515 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKG--LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES-- 515 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCC--cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--
Confidence 5899999999999999999998764 8999999999999998887766 5678999999999999999975544432
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeecc-cccc-cccccc----------cchhh----
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTK-SFFG-TLEDHE----------CPAIL---- 241 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~-~~~~-~l~~~~----------~PEI~---- 241 (846)
-.....|+|-.+..|+.|||||.. .|++|-|.-. ..|. +|.++. .||-.
T Consensus 516 ------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey 583 (830)
T COG1202 516 ------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEY 583 (830)
T ss_pred ------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceecc
Confidence 123468999999999999999987 3999988544 3454 333221 11111
Q ss_pred -hhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCC-cccccccceecccccchhH
Q 003111 242 -RLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGR-YEPTFYGRLLASFSLSFDA 319 (846)
Q Consensus 242 -r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~-~~LT~LGr~ma~LPldP~l 319 (846)
..+-.+.+|...+.. ++.+.........+-+ .-..+.++..|.+.|.++.+ |+ .++|+.|+.++.-=+.|.-
T Consensus 584 ~ee~e~e~vLA~~~v~-~s~~~i~~v~~~~~g~--~~~~~k~l~~Lee~g~i~~~---G~~v~~T~yGrava~~Fl~p~~ 657 (830)
T COG1202 584 DEEDEEENVLASAGVT-NSLSVIERVNSLMLGA--AFDPKKALSKLEEYGMIKKK---GNIVRPTPYGRAVAMSFLGPSE 657 (830)
T ss_pred CcHHHHHHHHHHhhhc-CcHHHHhhcChhhccc--cCCHHHHHHHHHhcCCeecc---CCEeeeccccceeEEeecCchH
Confidence 111223344321111 1222111221111111 12357899999999999873 43 6899999999999999998
Q ss_pred HHHHHHhcccCcchhhHHhHhhhc
Q 003111 320 SVLVLKFGEIGMLREGILLGILMD 343 (846)
Q Consensus 320 sk~LL~~~~~gCl~e~l~IaA~Ls 343 (846)
+-.|..+. .-..+.+-|++.|.
T Consensus 658 a~~Ir~~v--~~~~~pl~i~~~l~ 679 (830)
T COG1202 658 AEFIREGV--LASMDPLRIAAELE 679 (830)
T ss_pred HHHHHHhh--hccCChHhHhhccc
Confidence 88877653 23345677777764
No 43
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=7.1e-09 Score=123.19 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCCC
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 163 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnIA 163 (846)
+..|++.+..++.+. ..||||..+.++.+.+...|...+ +.+..|||..+..++..+.... +..+|+||||+|
T Consensus 459 ~~aL~~~i~~~~~~~----~pvLIft~t~~~se~L~~~L~~~g--i~~~~Lhg~~~~rE~~ii~~ag-~~g~VlVATdmA 531 (656)
T PRK12898 459 WAAVAARVRELHAQG----RPVLVGTRSVAASERLSALLREAG--LPHQVLNAKQDAEEAAIVARAG-QRGRITVATNMA 531 (656)
T ss_pred HHHHHHHHHHHHhcC----CCEEEEeCcHHHHHHHHHHHHHCC--CCEEEeeCCcHHHHHHHHHHcC-CCCcEEEEccch
Confidence 455666666555432 349999999999999999997654 8899999997655554333332 234799999999
Q ss_pred ccccCCC---CeE-----EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 164 ESSVTIP---KVA-----YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 164 EtsiTIp---~V~-----yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
.+|+.|+ +|. +||.+.+ |-|.....||.||+||.+ +|.|+.+++.+
T Consensus 532 gRGtDI~l~~~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 532 GRGTDIKLEPGVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hcccCcCCccchhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 9999999 776 8996433 225566789999999998 59999988764
No 44
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.94 E-value=4.7e-09 Score=117.45 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=82.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHH----hhc-cCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA----MKI-CKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~----~~~-~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
++.+|||+++.++++.+...|........+..+||+++..++... +.. ..+..+|+|||+++|+|++|+ +.+||
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi 300 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMI 300 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEE
Confidence 367999999999999999999876655679999999998876543 333 357789999999999999996 66666
Q ss_pred eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-----CcEEEeecccc
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-----GQVYRLVTKSF 228 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-----G~c~rLyt~~~ 228 (846)
. | +.+-++..||+||+||.+. |..|-++....
T Consensus 301 ~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 301 T--------E------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred E--------c------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 2 1 1234678999999999753 36777766544
No 45
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.94 E-value=6.9e-09 Score=124.72 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-++.+++.+...|.+. ..||||..+.+..+.+...|...+ +.+..|||.+...++..+...+.. -+|.||||+
T Consensus 409 K~~ai~~~i~~~~~~~----~pvLIft~s~~~se~ls~~L~~~g--i~~~~L~a~~~~~E~~ii~~ag~~-g~VlIATdm 481 (762)
T TIGR03714 409 KLMATLEDVKEYHETG----QPVLLITGSVEMSEIYSELLLREG--IPHNLLNAQNAAKEAQIIAEAGQK-GAVTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHhhCC----CCEEEEECcHHHHHHHHHHHHHCC--CCEEEecCCChHHHHHHHHHcCCC-CeEEEEccc
Confidence 3566677777776543 359999999999999999997654 778899999988777655544432 289999999
Q ss_pred CccccCCC---------CeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 163 AESSVTIP---------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 163 AEtsiTIp---------~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|.+|+.|+ |+.+||. |++.+ .+.. .||+||+||.+ ||.++.+++.+
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit--------~~~ps----------~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGT--------ERMEN----------SRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred cccccCCCCCccccccCCeEEEEe--------cCCCC----------cHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 99999999 8888884 45443 2334 89999999998 59999888864
No 46
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.93 E-value=3.1e-09 Score=116.16 Aligned_cols=105 Identities=27% Similarity=0.433 Sum_probs=91.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.++||..+....+.+...|+..+ +..++|||.|++..+.-.+..| .+.|.|+||||||.+++.||.|++||+
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg--~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--- 374 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLG--FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--- 374 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcC--cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe---
Confidence 4789999999999999988887765 8999999999999998877666 678999999999999999999999997
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~ 226 (846)
||-.. +-....+|.||+||++ +|+.+.|.|.
T Consensus 375 -----yDiP~----------~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 375 -----YDIPT----------HSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred -----cCCCC----------cHHHHHHHcccccccCCCcceEEEEeh
Confidence 55333 4456789999999987 5999999998
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.91 E-value=6.9e-09 Score=132.42 Aligned_cols=100 Identities=24% Similarity=0.273 Sum_probs=81.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCC-------------------------------CcEEEEecCCccHHHHHHHhhcc-
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSS-------------------------------FFKVHILHSSVDTEQALMAMKIC- 150 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~-------------------------------~~~v~~Lhs~l~~~~~~~~~~~~- 150 (846)
+.+|||.++....+.+...|+.... .+.+..+||+|+.+++..+.+.+
T Consensus 245 ~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK 324 (1490)
T PRK09751 245 RSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALK 324 (1490)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHH
Confidence 4699999999999988877754210 12356789999999999888765
Q ss_pred CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcE
Q 003111 151 KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQV 220 (846)
Q Consensus 151 ~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c 220 (846)
.|..||||||+.+|.+|.|++|.+||..|. |.|.++..||.|||||...|.+
T Consensus 325 ~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 325 SGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred hCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCcc
Confidence 688899999999999999999999997442 5688999999999999755443
No 48
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.90 E-value=1e-08 Score=96.66 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=83.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||.+....++.+...|... ...+..+||+++.+++..+...+ .+..+|+++|+.++.|+++|++..||-.+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~- 104 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYD- 104 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeC-
Confidence 468999999999999999888753 46789999999988877766544 56689999999999999999999888433
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEE
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 222 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~r 222 (846)
+ +.+.....|+.||+||.+ .|.|+.
T Consensus 105 -------~----------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 105 -------L----------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred -------C----------CCCHHHheecccccccCCCCceEEe
Confidence 2 557888899999999998 577764
No 49
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.3e-08 Score=115.07 Aligned_cols=123 Identities=23% Similarity=0.364 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEec--------CCccHHHHHHHhhcc-CCCe
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILH--------SSVDTEQALMAMKIC-KSHR 154 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lh--------s~l~~~~~~~~~~~~-~~~r 154 (846)
.+.+.+++....++.+ +..|+||.--++..+.+...|...+.... +.+. .+|++.+|..+++.| .|.-
T Consensus 350 l~~l~eilke~~~k~~--~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 350 LEKLREILKEQLEKNG--DSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred HHHHHHHHHHHHhcCC--CceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 3445566666665544 35799999999999999999987766554 2232 479999998888766 7789
Q ss_pred EEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 155 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 155 KVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
+|+|||.|+|-|+.||++.+|| .|+|.. |-=-..||+||+||.++|..|-|.++.
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVi--------fYEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVI--------FYEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEE--------EecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 9999999999999999999999 588765 445678999999999999999999987
No 50
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.88 E-value=1.3e-08 Score=114.45 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=70.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
++.+|||+++..+++.++..|+..+..+.+..+||.++.+++.+.. ...|+|||+++|+||+||++ +||
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi----- 340 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDFKRD-WLI----- 340 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCCCCc-eEE-----
Confidence 3679999999999999999998755456788999999998876542 46899999999999999987 555
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCC
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 213 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaG 213 (846)
++| .+.++..||.||+|
T Consensus 341 ----~~p-----------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 ----FSA-----------RDAAAFWQRLGRLG 357 (357)
T ss_pred ----ECC-----------CCHHHHhhhcccCC
Confidence 222 25678999999998
No 51
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.85 E-value=1.2e-08 Score=114.99 Aligned_cols=105 Identities=27% Similarity=0.421 Sum_probs=90.9
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.|+||++....++-+++.|...+ +.+..|||+-+++|+..++..+ .+.-.|+||||+|.++|.||||..||+.
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlViny---- 592 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINY---- 592 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeec----
Confidence 59999999999999999998766 9999999999999988877665 5678999999999999999999999974
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSF 228 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~ 228 (846)
|-.. |-....+|.||+||.+. |....+||+++
T Consensus 593 ----dmak----------sieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 593 ----DMAK----------SIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ----chhh----------hHHHHHHHhccccccccCceeEEEeccch
Confidence 4322 34457799999999885 99999999975
No 52
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.85 E-value=7.7e-09 Score=126.33 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=88.0
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC------CCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL------SSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYV 175 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~------~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yV 175 (846)
+.+|||+++....+.+...|... .....+..+||++++++++.+.+.+ .|..+||||||++|.||.|++|.+|
T Consensus 272 ~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~V 351 (742)
T TIGR03817 272 ARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAV 351 (742)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEE
Confidence 46999999999999888776432 1135688999999999998887655 7888999999999999999999999
Q ss_pred EeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 176 IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 176 IDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
|..|+ |-|.++..||+|||||.+. |.++-+.+.
T Consensus 352 I~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 352 VIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred EEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 97653 2367899999999999875 999987763
No 53
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=2e-08 Score=121.68 Aligned_cols=119 Identities=22% Similarity=0.230 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCCC
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 163 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnIA 163 (846)
+..+++.+...+.+. ..+|||..+.++.+.+...|...+ +.+..|||.+...++..+...... .+|+||||+|
T Consensus 414 ~~al~~~i~~~~~~~----~pvLIf~~t~~~se~l~~~L~~~g--i~~~~L~~~~~~~e~~~i~~ag~~-g~VlIATdmA 486 (790)
T PRK09200 414 YKAVIEEVKERHETG----RPVLIGTGSIEQSETFSKLLDEAG--IPHNLLNAKNAAKEAQIIAEAGQK-GAVTVATNMA 486 (790)
T ss_pred HHHHHHHHHHHHhcC----CCEEEEeCcHHHHHHHHHHHHHCC--CCEEEecCCccHHHHHHHHHcCCC-CeEEEEccch
Confidence 455666666655443 359999999999999999997654 788999999887776555444322 3799999999
Q ss_pred ccccCC---CCeE-----EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 164 ESSVTI---PKVA-----YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 164 EtsiTI---p~V~-----yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
.+|+.| |+|. +||.+.+ |-|.....||.||+||.+ +|.+..+++.+
T Consensus 487 gRG~DI~l~~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 487 GRGTDIKLGEGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred hcCcCCCcccccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 999999 7998 9996432 235667889999999998 59999988864
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.77 E-value=7.7e-08 Score=116.98 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=87.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHH-----HHhhccC-----C-------CeEEEEecCCCc
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQAL-----MAMKICK-----S-------HRKVILATNIAE 164 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~-----~~~~~~~-----~-------~rKVIlATnIAE 164 (846)
++.+|||+++.++++.+.+.|...+ + ..|||.|++.++. .+++.+. + ..+|+|||+++|
T Consensus 272 g~~vLVF~NTv~~Aq~L~~~L~~~g--~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 272 GGAILVFCRTVKHVRKVFAKLPKEK--F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC--C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4689999999999999999997644 2 8999999999887 4444332 2 268999999999
Q ss_pred cccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcE-EEeeccccccc-ccccccchhh
Q 003111 165 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQV-YRLVTKSFFGT-LEDHECPAIL 241 (846)
Q Consensus 165 tsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c-~rLyt~~~~~~-l~~~~~PEI~ 241 (846)
+||.|+. .+||. ++ ...++..||.||+||.+. |.+ +.+++.+.-.. -.....||++
T Consensus 348 rGLDId~-d~VI~--------d~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l 406 (844)
T TIGR02621 348 VGVNISA-DHLVC--------DL------------APFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKID 406 (844)
T ss_pred hcccCCc-ceEEE--------CC------------CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHH
Confidence 9999987 55552 11 123789999999999865 322 34333311111 1122246888
Q ss_pred hhhhHHHHHHHhh
Q 003111 242 RLSLRLQVLLICC 254 (846)
Q Consensus 242 r~~L~~~vL~lk~ 254 (846)
+..+..+.+..++
T Consensus 407 ~~t~~~L~~~~~~ 419 (844)
T TIGR02621 407 KSTWSTLKKLQQL 419 (844)
T ss_pred HHHHHHHHHHHhc
Confidence 8777665554443
No 55
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.76 E-value=1.5e-08 Score=113.02 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=99.4
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
.++++..+.. .+.++||+|+-..++-....+........++.+||.|...++..+++.| +...-|+++|+||.++|.
T Consensus 245 ~lv~~L~~~~--~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 245 QLVHLLNNNK--DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHhccc--cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 3445554433 3579999999999998777776655668899999999998877777655 557789999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEE--Eeeccccccc-ccccccchhhhhh
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVY--RLVTKSFFGT-LEDHECPAILRLS 244 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~--rLyt~~~~~~-l~~~~~PEI~r~~ 244 (846)
||||.+||- |||.... ++..+|.||+||.+. |..+ -+=.+++|-. |.-...|++-+..
T Consensus 323 ip~iD~VvQ--------~DpP~~~----------~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 323 IPGIDLVVQ--------FDPPKDP----------SSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred CCCceEEEe--------cCCCCCh----------hHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 999999994 7887653 456689988877664 6554 4444456654 4455566666543
No 56
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=5.6e-08 Score=117.31 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-++.|++.+...|.+.. .||||..+.++.+.+...|...+ +....||+.+...++..+...... -.|.||||+
T Consensus 425 K~~al~~~i~~~~~~g~----pvLI~t~si~~se~ls~~L~~~g--i~~~~Lna~~~~~Ea~ii~~ag~~-g~VtIATnm 497 (796)
T PRK12906 425 KFNAVVKEIKERHAKGQ----PVLVGTVAIESSERLSHLLDEAG--IPHAVLNAKNHAKEAEIIMNAGQR-GAVTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHhCCC----CEEEEeCcHHHHHHHHHHHHHCC--CCeeEecCCcHHHHHHHHHhcCCC-ceEEEEecc
Confidence 35667777777665433 59999999999999999998765 677899999886666665554432 259999999
Q ss_pred CccccCC---CCeE-----EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 163 AESSVTI---PKVA-----YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 163 AEtsiTI---p~V~-----yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|.+|..| ++|. +||.+-+ +-|+-.-.||.||+||.+ ||.+..+++.+
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9999999 4899 9996432 236677889999999998 59998887765
No 57
>PRK13766 Hef nuclease; Provisional
Probab=98.71 E-value=7.5e-08 Score=118.77 Aligned_cols=123 Identities=23% Similarity=0.337 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCC--------ccHHHHHHHhhcc-CCCe
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS--------VDTEQALMAMKIC-KSHR 154 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~--------l~~~~~~~~~~~~-~~~r 154 (846)
.+.+.+++..+....+ ++.+|||....+.++.+.+.|...+ +.+..+||. |+..++..+...+ .+..
T Consensus 349 ~~~L~~il~~~~~~~~--~~kvlIF~~~~~t~~~L~~~L~~~~--~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~ 424 (773)
T PRK13766 349 LEKLREIVKEQLGKNP--DSRIIVFTQYRDTAEKIVDLLEKEG--IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF 424 (773)
T ss_pred HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHhCC--CceEEEEccccccccCCCCHHHHHHHHHHHHcCCC
Confidence 3555566666654333 4689999999999999999885543 566777775 8877776666544 6778
Q ss_pred EEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccc
Q 003111 155 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 228 (846)
Q Consensus 155 KVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~ 228 (846)
+|+|||++++.|+++|++.+||. ||+.. |-....||+||+||.++|.+|.|+++..
T Consensus 425 ~vLvaT~~~~eGldi~~~~~VI~--------yd~~~----------s~~r~iQR~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 425 NVLVSTSVAEEGLDIPSVDLVIF--------YEPVP----------SEIRSIQRKGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred CEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHHhcccCcCCCCEEEEEEeCCC
Confidence 99999999999999999999994 77632 5567889999999999999999998754
No 58
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.69 E-value=1.5e-07 Score=112.87 Aligned_cols=120 Identities=23% Similarity=0.230 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATN 161 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATn 161 (846)
.+..|++.+...|.+.. .||||..+.++.+.+...|...+ +....||+. ..+++..+..+ .+.-.|.||||
T Consensus 390 k~~ai~~~i~~~~~~gr----pvLV~t~si~~se~ls~~L~~~g--i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 390 KWKAVVDEIKERHAKGQ----PVLVGTTSVEKSELLSNLLKERG--IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHhcCC----CEEEEeCcHHHHHHHHHHHHHcC--CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEec
Confidence 45667777777776643 59999999999999999998765 677889998 44444444333 45569999999
Q ss_pred CCccccCCCC--e-----EEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 162 IAESSVTIPK--V-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 162 IAEtsiTIp~--V-----~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+|.+++.|+. | -+||.+.+ +-|+..-.||.||+||.+ ||.+..+.+.++
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999998 4 48886432 336777889999999998 499988887753
No 59
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.66 E-value=1.2e-07 Score=114.06 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=90.7
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..+|||.++...++.+...|...+ +.+..+||+++..++..+++.+ .|...|+|+||+++.|+.+|++.+||-
T Consensus 443 ~~vLIf~~tk~~ae~L~~~L~~~g--i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi---- 516 (655)
T TIGR00631 443 ERVLVTTLTKKMAEDLTDYLKELG--IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI---- 516 (655)
T ss_pred CEEEEEECCHHHHHHHHHHHhhhc--cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----
Confidence 579999999999999999997654 7888999999998887777654 778899999999999999999999884
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
+|.... ..+-|..+..||.|||||..+|+++-+.+..
T Consensus 517 ----~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 517 ----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred ----eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 332221 1233677899999999999999998887753
No 60
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.66 E-value=9.9e-08 Score=103.55 Aligned_cols=106 Identities=25% Similarity=0.362 Sum_probs=84.4
Q ss_pred cccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 101 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 101 ~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
+.|+|.||+.+..+.+.+...|.... +.+..|||.|++.++......| .+.-+|++||++|.+++.||.|..||+--
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le--~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLE--VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhc--eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecC
Confidence 36899999999999999988887654 8999999999999988777555 67789999999999999999999999854
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
.-+. -....+|.||+.|.+. |..+.++++
T Consensus 331 iPr~------------------P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 331 IPRD------------------PKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred CCCC------------------HHHHHHhhcchhcccCCcceEEEech
Confidence 4332 1234567776655543 777777775
No 61
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.65 E-value=5.3e-08 Score=84.73 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=60.9
Q ss_pred CcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHH
Q 003111 128 FFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 206 (846)
Q Consensus 128 ~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~ 206 (846)
++.+..+||+++.+++..+++.+ .+..+|+++|++++.|+++|++..||..+. +-|..+..
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 37899999999999988877655 566799999999999999999999997543 44788999
Q ss_pred hhcCCCCCC
Q 003111 207 QRRGRTGRT 215 (846)
Q Consensus 207 QR~GRaGR~ 215 (846)
||.||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999996
No 62
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.65 E-value=2.3e-07 Score=101.33 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=90.8
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
|.-+||+-+......++..|...+ ..|-.|||.|..+++..+...| .|.-||+++||+..++|.++.|..||+.-+-
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~G--h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEG--HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcC--ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCc
Confidence 678999999999999999998765 7889999999999998887655 7889999999999999999999999985442
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
-. |+.. -.-....+|.||+||-+. |..|-|....
T Consensus 409 ~~--~~~~----------pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 409 VK--YTGE----------PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred cc--cCCC----------CCHHHHHHHhcccccccccceEEEeeccc
Confidence 11 1111 244567899999999875 9999986653
No 63
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.61 E-value=5.8e-08 Score=109.03 Aligned_cols=121 Identities=28% Similarity=0.431 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcc
Q 003111 87 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAES 165 (846)
Q Consensus 87 i~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEt 165 (846)
+.-++.|+...-. .|++|||++-..+.+++...|.-.+ +.+..||+++.+.++.+++.-+ ++...|++||++|..
T Consensus 455 l~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lklk~--~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaar 530 (731)
T KOG0339|consen 455 LNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLKLKG--FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAAR 530 (731)
T ss_pred HHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhcccc--ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhc
Confidence 3345555554433 5899999999999999988886543 8999999999999988776555 455689999999999
Q ss_pred ccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccccc
Q 003111 166 SVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSFF 229 (846)
Q Consensus 166 siTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~~ 229 (846)
+++|++++.||+ ||--.. -....||.||.||.+. |..|.|.|+.+-
T Consensus 531 gldI~~ikTVvn--------yD~ard----------IdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 531 GLDIPSIKTVVN--------YDFARD----------IDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred CCCccccceeec--------ccccch----------hHHHHHHhhhcccccccceeeEEechhhH
Confidence 999999999997 343332 2345699999999886 999999999654
No 64
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.59 E-value=2.9e-07 Score=111.29 Aligned_cols=109 Identities=26% Similarity=0.312 Sum_probs=90.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..+|||+++...++++...|...+ +.+..+||+++..++..+++.+ .|...|+|+|++++.|+.+|++++||-+
T Consensus 447 ~~viIf~~t~~~ae~L~~~L~~~g--i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~--- 521 (652)
T PRK05298 447 ERVLVTTLTKRMAEDLTDYLKELG--IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIL--- 521 (652)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhcc--eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEe---
Confidence 569999999999999999997654 7889999999998888777654 6778999999999999999999999853
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 226 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~ 226 (846)
|.... ..|-+..+..||.||+||...|.|+.+++.
T Consensus 522 -----d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 522 -----DADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred -----CCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 32211 012367789999999999988999988875
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.59 E-value=1.9e-07 Score=113.83 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=138.9
Q ss_pred ccceEEEcCcHHHHHHHHHHhcC--------C--------CCCc-------------------EEEEecCCccHHHHHHH
Q 003111 102 EKSILVFLPTYYALEQQWHLMKP--------L--------SSFF-------------------KVHILHSSVDTEQALMA 146 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~--------~--------~~~~-------------------~v~~Lhs~l~~~~~~~~ 146 (846)
+|.+|||+++..+-...++.|.. . ...+ .+-..|++|+.+++..+
T Consensus 253 ~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~v 332 (766)
T COG1204 253 GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLV 332 (766)
T ss_pred CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHH
Confidence 46899999999877666555431 0 0011 13345899999999888
Q ss_pred hhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcEEE
Q 003111 147 MKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQVYR 222 (846)
Q Consensus 147 ~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c~r 222 (846)
.+.| +|+.|||+||+-...++..|.-++||- -..+||+..| .+.|++....|+.|||||.+= |..+.
T Consensus 333 E~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 333 EDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred HHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 7766 789999999999999999999888882 2356887222 678999999999999999882 55555
Q ss_pred ee-cccc---cccccccccchhhhhhh------HHHHHHHhhhhc-ccCCChhhhhccccCCCC-------hhhHHHHHH
Q 003111 223 LV-TKSF---FGTLEDHECPAILRLSL------RLQVLLICCAES-KAISDPKVLLQKALDPPY-------PEVVGDALD 284 (846)
Q Consensus 223 Ly-t~~~---~~~l~~~~~PEI~r~~L------~~~vL~lk~~~~-~~l~~~~~~l~~~idpP~-------~~~I~~Al~ 284 (846)
+- +.+. +...-.+..||...+-| ...++.+.+.+. ...-....|+..+.-.|. ...+.++++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~ 483 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLR 483 (766)
T ss_pred EecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHH
Confidence 54 2221 12344555666522222 222222211110 000001122222222332 356888899
Q ss_pred HHHhcC-CcccCCCCCCcccccccceecccccchhHHHHHHHhc
Q 003111 285 LLDHKR-ALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFG 327 (846)
Q Consensus 285 ~L~~Lg-ALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~ 327 (846)
.|.+.+ .++.. ...+..|.+|+.++++-++|..++.+....
T Consensus 484 ~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~~~l 525 (766)
T COG1204 484 YLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFRDLL 525 (766)
T ss_pred HHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHHHHH
Confidence 999986 66552 245678999999999999999999876554
No 66
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.59 E-value=1e-07 Score=82.23 Aligned_cols=70 Identities=31% Similarity=0.333 Sum_probs=60.5
Q ss_pred CcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHH
Q 003111 128 FFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 206 (846)
Q Consensus 128 ~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~ 206 (846)
++.+..+||+++.+++...++.+ ++..+|+++|++++.++++|++..||..+. +.+.+...
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 47899999999998887776654 567799999999999999999999997553 56889999
Q ss_pred hhcCCCCCC
Q 003111 207 QRRGRTGRT 215 (846)
Q Consensus 207 QR~GRaGR~ 215 (846)
||.||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999996
No 67
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.57 E-value=2.5e-07 Score=113.85 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=93.6
Q ss_pred cccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 101 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 101 ~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
.+|.|-.-.|..++|+++...|+...++.+|...||.|+..+.+.++..| .|.-.|+|||.|.||||.||++..+|
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI--- 878 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII--- 878 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE---
Confidence 36889999999999999999999988999999999999999988888666 77889999999999999999998777
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
+.+... + -=|+.-|-+||+||... |.||-||+..
T Consensus 879 -----Ie~AD~-f--------GLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 879 -----IERADK-F--------GLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred -----Eecccc-c--------cHHHHHHhccccCCccceEEEEEeecCc
Confidence 112221 1 23677899999999886 9999999974
No 68
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=4.6e-07 Score=110.48 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATN 161 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATn 161 (846)
-++.|++.|...|.+.. .||||..+.+..+.+.+.|...+ +....||+. ..+++..+..+ .+.-.|.||||
T Consensus 583 K~~Ali~~I~~~~~~gr----pVLIft~Sve~sE~Ls~~L~~~g--I~h~vLnak--q~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 583 KYNAIVLKVEELQKKGQ----PVLVGTASVEVSETLSRMLRAKR--IAHNVLNAK--QHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHhhCCC----CEEEEeCcHHHHHHHHHHHHHcC--CCceeecCC--HHHhHHHHHHhcCCCCeEEEecc
Confidence 45677777777776543 59999999999999999997765 667788874 44454444444 34459999999
Q ss_pred CCccccCCC---CeEE-----EEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 162 IAESSVTIP---KVAY-----VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 162 IAEtsiTIp---~V~y-----VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+|.+|+.|+ +|.. ||.+-+ +-|+-.-.||.||+||.+ ||.+..+++.++
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999 5543 354322 225556789999999998 599998888754
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.51 E-value=9.3e-07 Score=107.22 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=114.4
Q ss_pred CCCC-cChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCcccccc
Q 003111 1 MSAT-ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 79 (846)
Q Consensus 1 MSAT-~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i 79 (846)
+||| -+.+.-++|..+. +.+|.++.+++ .+.+.+++...+. +....
T Consensus 189 LSATV~~~~~varfL~g~--~~~~~Iv~~~~---~k~~~i~v~~p~~--------------------------~~~~~-- 235 (814)
T COG1201 189 LSATVGPPEEVAKFLVGF--GDPCEIVDVSA---AKKLEIKVISPVE--------------------------DLIYD-- 235 (814)
T ss_pred ehhccCCHHHHHHHhcCC--CCceEEEEccc---CCcceEEEEecCC--------------------------ccccc--
Confidence 5999 5677889998753 23688998887 3555555542221 00001
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEE
Q 003111 80 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVIL 158 (846)
Q Consensus 80 ~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIl 158 (846)
......+.+.|..+.++.. ..|||.+++...|.+...|..... ..+..-||+|+.+++..+.+.. +|..|+||
T Consensus 236 -~~~~~~~~~~i~~~v~~~~----ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV 309 (814)
T COG1201 236 -EELWAALYERIAELVKKHR----TTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVV 309 (814)
T ss_pred -cchhHHHHHHHHHHHhhcC----cEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHHHhcCCceEEE
Confidence 1112223455555655543 699999999999999998877654 5677889999999998887654 67899999
Q ss_pred ecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC
Q 003111 159 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD 217 (846)
Q Consensus 159 ATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~ 217 (846)
||.-.|-+|+|-+|..||- |++ |=|-+...||.||+|+.-.
T Consensus 310 ~TSSLELGIDiG~vdlVIq--------~~S----------P~sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 310 ATSSLELGIDIGDIDLVIQ--------LGS----------PKSVNRFLQRIGRAGHRLG 350 (814)
T ss_pred EccchhhccccCCceEEEE--------eCC----------cHHHHHHhHhccccccccC
Confidence 9999999999999999995 332 2356788899999997543
No 70
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.50 E-value=2.5e-08 Score=104.82 Aligned_cols=59 Identities=37% Similarity=0.939 Sum_probs=48.7
Q ss_pred CccccccccccccCcCCCCCCCCccccCC-------------CC--------------------C----cccccccc---
Q 003111 559 TPGEAPLCVYFINGSCNRGTGCPFSHSLQ-------------AK--------------------R----PACKFFYS--- 598 (846)
Q Consensus 559 ~~~k~~~C~~f~~G~C~~G~~C~FsH~~~-------------~~--------------------~----~~C~~f~~--- 598 (846)
.+.++++|-||.+|.|.+|+.|.||||.. .+ . .+|+||+-
T Consensus 88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CCchHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 37799999999999999999999999985 00 1 18999987
Q ss_pred ------cCCCCCC-CCCCCCCCCCCC
Q 003111 599 ------LQGCRNG-DSCIFSHDLGQP 617 (846)
Q Consensus 599 ------~g~C~~G-~~C~f~H~~~~~ 617 (846)
.+.|.+| +.|.|.|.+|..
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCCcc
Confidence 3479997 589999987654
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.49 E-value=6e-07 Score=106.74 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC-CCCcEEEEec--------CCccHHHHHHHhhcc-CC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILH--------SSVDTEQALMAMKIC-KS 152 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~-~~~~~v~~Lh--------s~l~~~~~~~~~~~~-~~ 152 (846)
.++.+.+.+.......+ +--++||+-+++++..+...|... ...++...+- .+|++.+|+.+++.| .|
T Consensus 396 kle~l~~~l~e~f~~~~--dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNP--DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred hHHHHHHHHHHHhhcCC--CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 34445555555554443 346999999999999888877631 1112222221 367788887777655 79
Q ss_pred CeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecc
Q 003111 153 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 226 (846)
Q Consensus 153 ~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~ 226 (846)
..+|+|||.|||-|+.|+.+..|| .||..++ --...||+|| ||...|+|+-|++.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVI--------cYd~~sn----------pIrmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVI--------CYDYSSN----------PIRMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred CccEEEEecchhccCCcccccEEE--------EecCCcc----------HHHHHHHhcc-ccccCCeEEEEEcc
Confidence 999999999999999999999999 3777664 2357799999 99999999999995
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.48 E-value=5.1e-07 Score=106.10 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEec-CC
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT-NI 162 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlAT-nI 162 (846)
++|.+++..+... ++.+|||....++++.+.+.|...+ ..+..+||+++.+++..+.+.+ .+..+|+||| ++
T Consensus 331 ~~I~~~~~~~~~~----~~~~lV~~~~~~h~~~L~~~L~~~g--~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~ 404 (501)
T PHA02558 331 KWIANLALKLAKK----GENTFVMFKYVEHGKPLYEMLKKVY--DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGV 404 (501)
T ss_pred HHHHHHHHHHHhc----CCCEEEEEEEHHHHHHHHHHHHHcC--CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcce
Confidence 4555555555422 3579999999999999999998754 6899999999999988776655 4667899998 89
Q ss_pred CccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCc
Q 003111 163 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 219 (846)
Q Consensus 163 AEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~ 219 (846)
+.+|+++|++..||- +.|.. |+....||.||+||..+|+
T Consensus 405 l~eG~Dip~ld~vIl--------~~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 405 FSTGISIKNLHHVIF--------AHPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred eccccccccccEEEE--------ecCCc----------chhhhhhhhhccccCCCCC
Confidence 999999999999993 23322 6778889999999998875
No 73
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.48 E-value=7.4e-07 Score=104.70 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=85.3
Q ss_pred ceEEEcCcHHH--------HHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEE
Q 003111 104 SILVFLPTYYA--------LEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAY 174 (846)
Q Consensus 104 ~ILVFLPg~~e--------I~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~y 174 (846)
.+-+..|-.+| ++..+..|....+++++-.+||.|+.++.+.+++.| .+...|+|||++.|-+|.+|+...
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 57777886654 345566676666778899999999999999998877 568899999999999999999986
Q ss_pred EEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 175 VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 175 VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
.| .+|+..- -=|+..|=+||+||..- ..|+-+|...
T Consensus 555 MV--------Ie~AERF---------GLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 555 MV--------IENAERF---------GLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred EE--------Eechhhh---------hHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 55 3565542 34678899999999874 8899988763
No 74
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=98.47 E-value=4.5e-07 Score=102.09 Aligned_cols=126 Identities=23% Similarity=0.338 Sum_probs=96.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
.-|+||+|+...+.-.+..|.. .++.|.-+||.+++..+..++..| +...-|+||||+|.+++.||+|..||-
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~--~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ---- 404 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNY--IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ---- 404 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhh--cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----
Confidence 4699999999988888888873 348899999999999887666544 567789999999999999999999995
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecccc--c-cc-----ccccccchhhhhhhHHH
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSF--F-GT-----LEDHECPAILRLSLRLQ 248 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~--~-~~-----l~~~~~PEI~r~~L~~~ 248 (846)
||+.. ...+..+|.||+||.+. |..+-+..++. | .. +.+++.|++.-.++..+
T Consensus 405 ----~~~P~----------d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~~ 466 (543)
T KOG0342|consen 405 ----YDPPS----------DPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQSQ 466 (543)
T ss_pred ----eCCCC----------CHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHHH
Confidence 66655 46788999999999775 88887766642 2 11 44555555544444443
No 75
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.44 E-value=5.5e-07 Score=102.55 Aligned_cols=103 Identities=24% Similarity=0.384 Sum_probs=88.2
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.+|||+-+......+...|.... +....+||..++.++.+.++.+ .+.-.|+||||||++++.||+|++||+
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~--~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----- 411 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNG--YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----- 411 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCC--CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE-----
Confidence 79999999999999988887654 7889999999999998888766 577899999999999999999999996
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
||-.... ....+|.||+||.+. |...-|+.+
T Consensus 412 ---yDmP~d~----------d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 412 ---YDMPADI----------DDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred ---eecCcch----------hhHHHhccccccCCCCceeEEEecc
Confidence 6644433 456799999999985 999988873
No 76
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.43 E-value=8.7e-07 Score=100.75 Aligned_cols=105 Identities=28% Similarity=0.346 Sum_probs=84.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|..|||.++.+.|.++.-.|.... +.-++||+.|.+.++.+..+.| ....-|+|||++|.+++.||+|.+||-
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~--i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLD--IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 5899999999999999999887654 6678999999998887776655 345689999999999999999999995
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
|--.. +-....+|.||+.|... |...-|+..
T Consensus 538 -----YqVPr----------tseiYVHRSGRTARA~~~Gvsvml~~P 569 (731)
T KOG0347|consen 538 -----YQVPR----------TSEIYVHRSGRTARANSEGVSVMLCGP 569 (731)
T ss_pred -----eecCC----------ccceeEecccccccccCCCeEEEEeCh
Confidence 32222 12234489999999875 988888765
No 77
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.41 E-value=6.1e-07 Score=98.72 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=89.7
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..|+||+....-.+.+...+. ...+....|||+-.+.+++..+..+ .|..+|+|||++|.+++.++||++|++
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N---- 539 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN---- 539 (629)
T ss_pred ceEEEEEechhhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----
Confidence 359999987644443332221 2347788999998888888777655 688999999999999999999999997
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccccccc---------ccccccchhhhhhhH
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSFFGT---------LEDHECPAILRLSLR 246 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~~~~---------l~~~~~PEI~r~~L~ 246 (846)
||-..++ .+..+|.||+||.+. |....+++..++.. -.++.+||=++...+
T Consensus 540 ----yDFP~nI----------eeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAe 600 (629)
T KOG0336|consen 540 ----YDFPRNI----------EEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAE 600 (629)
T ss_pred ----cCCCccH----------HHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 5555543 356688888888775 99999999987643 234556654443333
No 78
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.35 E-value=6.7e-07 Score=97.78 Aligned_cols=104 Identities=21% Similarity=0.389 Sum_probs=86.7
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.||||.-...|++.+.+.|.-.+ +.++.+||+-+++++...+..+ .|+..|+|||++|.-++.+|+|.+||+
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKG--VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----- 495 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKG--VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----- 495 (610)
T ss_pred ceEEEeccccChHHHHHHHHHcc--ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc-----
Confidence 49999999999999998876433 8899999999999998877766 788899999999999999999999997
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
||-.. --.+..+|.||+||.+. |+.-.++.+.
T Consensus 496 ---yDMP~----------eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 496 ---YDMPE----------EIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred ---CCChH----------HHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 55333 34567799999999875 8777666654
No 79
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.4e-06 Score=92.20 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=90.5
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
...||+.+...++-+.+.++... +.|..+||.|++++++.+++.| .|.-||+++|++-.+++.+|.|..||+
T Consensus 268 QavIFcnTk~kVdwLtekm~~~n--ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----- 340 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----- 340 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhC--ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe-----
Confidence 47999999999999998887644 8999999999999999998655 788899999999999999999999997
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSFF 229 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~~ 229 (846)
||-.. .+....+|.||.||-+. |..+-+...++.
T Consensus 341 ---YDLP~----------nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 341 ---YDLPN----------NRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred ---cCCCc----------cHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 66433 45778899999999764 998888776543
No 80
>PRK09694 helicase Cas3; Provisional
Probab=98.34 E-value=1.8e-06 Score=106.65 Aligned_cols=94 Identities=14% Similarity=0.253 Sum_probs=72.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHH----HHhhcc--CCC---eEEEEecCCCccccCCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQAL----MAMKIC--KSH---RKVILATNIAESSVTIPK 171 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~----~~~~~~--~~~---rKVIlATnIAEtsiTIp~ 171 (846)
++.+|||+++.++++++++.|+... ....+..+||.++..+++ .+++.+ .+. ++|+|||+|+|.||+| +
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 3679999999999999999997643 346899999999887763 233333 233 4899999999999999 5
Q ss_pred eEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC
Q 003111 172 VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 216 (846)
Q Consensus 172 V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~ 216 (846)
+.+||- | -...++..||+||+||..
T Consensus 639 ~DvlIt---------d-----------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 639 FDWLIT---------Q-----------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred CCeEEE---------C-----------CCCHHHHHHHHhccCCCC
Confidence 777772 1 123478999999999974
No 81
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.32 E-value=2e-06 Score=101.08 Aligned_cols=109 Identities=21% Similarity=0.260 Sum_probs=94.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.-+||..++.++++++..|...+ +.+..+|++|+.+++..+.+.+ .+..+|||||+.-.-+|.-|||+|||-
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g--~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--- 304 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNG--ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--- 304 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCC--CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE---
Confidence 4678999999999999999998764 8999999999999998887766 677899999999999999999999996
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
||... |-.+.-|=.|||||-+ |-.|+-||+..+..
T Consensus 305 -----~~lP~----------s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 305 -----YDLPG----------SIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred -----ecCCC----------CHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 34332 5667889999999987 58999999987753
No 82
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.32 E-value=2.2e-07 Score=101.86 Aligned_cols=57 Identities=30% Similarity=0.712 Sum_probs=50.3
Q ss_pred CccccccccccccCcCCCCCCCCccccCC-CCCcccccccccCCCCCCCCCCCCCCCC
Q 003111 559 TPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 559 ~~~k~~~C~~f~~G~C~~G~~C~FsH~~~-~~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
...+.++||||+.|.|.+||.|.|+|+.. .+.+.|.||...|.|.+|++|.|.|..+
T Consensus 73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 73 DSRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred ccCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 36689999999999999999999999865 4566899999999999999999999863
No 83
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.32 E-value=3.8e-07 Score=101.52 Aligned_cols=60 Identities=32% Similarity=0.647 Sum_probs=51.7
Q ss_pred Cccccccccccc-cCcCCC-CCCCCccccCC----------------CCCcccccccccCCCCCCCCCCCCCCCCCCC
Q 003111 559 TPGEAPLCVYFI-NGSCNR-GTGCPFSHSLQ----------------AKRPACKFFYSLQGCRNGDSCIFSHDLGQPV 618 (846)
Q Consensus 559 ~~~k~~~C~~f~-~G~C~~-G~~C~FsH~~~----------------~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~ 618 (846)
...++.+|++|. .|.|++ |++|+|.|... .++++|.+|.++|.|+||.+|+|.|......
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 366899999998 599999 99999999875 2355899999999999999999999865443
No 84
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.31 E-value=2e-06 Score=97.54 Aligned_cols=126 Identities=25% Similarity=0.404 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhc----C----------------CCCCcEEEEecCCccHHHHHHH
Q 003111 87 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK----P----------------LSSFFKVHILHSSVDTEQALMA 146 (846)
Q Consensus 87 i~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~----~----------------~~~~~~v~~Lhs~l~~~~~~~~ 146 (846)
+..++.++++.++. -..+||+...+.++-=+.++. . ...+++++-|||+|.++++..+
T Consensus 412 Laa~L~~~~k~~~~--qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~ 489 (708)
T KOG0348|consen 412 LAALLLNKVKFEEK--QKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSV 489 (708)
T ss_pred HHHHHHHHhhhhhh--ceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHH
Confidence 44667777776654 257999999887764333221 1 1135789999999999999988
Q ss_pred hhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcE--EE
Q 003111 147 MKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQV--YR 222 (846)
Q Consensus 147 ~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c--~r 222 (846)
+..| ...+-|+|||++|.+++.+|+|..||- ||+.. |.+...+|.||+.|.+. |.. |-
T Consensus 490 f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~----------s~adylHRvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 490 FQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF----------STADYLHRVGRTARAGEKGEALLFL 551 (708)
T ss_pred HHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCC----------CHHHHHHHhhhhhhccCCCceEEEe
Confidence 8777 456789999999999999999999994 88755 78899999998877664 554 44
Q ss_pred eecccccccc
Q 003111 223 LVTKSFFGTL 232 (846)
Q Consensus 223 Lyt~~~~~~l 232 (846)
+=++..|.+.
T Consensus 552 ~P~Eaey~~~ 561 (708)
T KOG0348|consen 552 LPSEAEYVNY 561 (708)
T ss_pred cccHHHHHHH
Confidence 4444556543
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=3.7e-06 Score=102.58 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+-+..|++.+..+|.+.. .||||..+.+..+.+...|...+ +....||+.+...++..+...+... .|.||||
T Consensus 428 ~k~~av~~~i~~~~~~g~----PVLVgt~Sie~sE~ls~~L~~~g--i~h~vLnak~~q~Ea~iia~Ag~~G-~VtIATN 500 (896)
T PRK13104 428 DKFQAIIEDVRECGVRKQ----PVLVGTVSIEASEFLSQLLKKEN--IKHQVLNAKFHEKEAQIIAEAGRPG-AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHhCCC----CEEEEeCcHHHHHHHHHHHHHcC--CCeEeecCCCChHHHHHHHhCCCCC-cEEEecc
Confidence 346778888888887654 49999999999999999998765 7888999999988888887776433 5999999
Q ss_pred CCccccCCC
Q 003111 162 IAESSVTIP 170 (846)
Q Consensus 162 IAEtsiTIp 170 (846)
+|.+|+.|.
T Consensus 501 mAGRGtDI~ 509 (896)
T PRK13104 501 MAGRGTDIV 509 (896)
T ss_pred CccCCccee
Confidence 999998764
No 86
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.29 E-value=1.4e-06 Score=98.27 Aligned_cols=105 Identities=29% Similarity=0.327 Sum_probs=84.4
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..++||+-+.....++..+|.-.+ +++--|||+|+++|+....+.| +....|+|||++|.+++.|+||..||+.-.
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlg--l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m- 503 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLG--LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM- 503 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhh--chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC-
Confidence 369999999999888877664333 7788899999999998887665 667899999999999999999999997432
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|.|-....+|.||+.|.+ .|....|..+.
T Consensus 504 -----------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 504 -----------------PKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred -----------------chhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 445566777777766655 38888888876
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=2.6e-06 Score=100.07 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCcEEEEecCCccHHHH--HHHhh-ccCCCeEEEEecCCCccccCCCCeEEEE--eCCCcceeeecCC
Q 003111 115 LEQQWHLMKPLSSFFKVHILHSSVDTEQA--LMAMK-ICKSHRKVILATNIAESSVTIPKVAYVI--DSCRSLQVFWDVN 189 (846)
Q Consensus 115 I~~~~~~L~~~~~~~~v~~Lhs~l~~~~~--~~~~~-~~~~~rKVIlATnIAEtsiTIp~V~yVI--DsG~~k~~~yd~~ 189 (846)
++++.+.|....+...+..+|++++.... +.+++ ...|...|+|+|++++.++++|+|..|+ |. |..
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~a--------D~~ 342 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDA--------DSG 342 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcC--------ccc
Confidence 35555555555556889999999865432 34444 3467789999999999999999999775 32 211
Q ss_pred CCcccceeeecCHhhHHhhcCCCCCCC-CCcEE
Q 003111 190 RKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVY 221 (846)
Q Consensus 190 ~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~ 221 (846)
.+...++-.--.=....|++|||||.. +|.++
T Consensus 343 l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 343 LHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred ccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 111111000001245689999999955 58887
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=4.3e-06 Score=100.91 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=83.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccC--CCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK--SHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~--~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
+..||||....+.++.+...|. +..+||+++..+|..+++.|. +..+++|+|+++.+||.||++.+||-
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~-- 566 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ-- 566 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--
Confidence 3579999999998888888773 244899999999999888773 35699999999999999999999994
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCC-cE-------EEeecccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG-QV-------YRLVTKSF 228 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G-~c-------~rLyt~~~ 228 (846)
+++..+ |+.+..||.||++|..+| .+ |.|.+++.
T Consensus 567 ------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 567 ------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred ------eCCCCC---------CHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 332222 788999999999999874 44 77777653
No 89
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.23 E-value=3.5e-06 Score=96.95 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=91.3
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
-+|||+-+.+...++...|. ...++.|-.+||..++.+++..+..+ .|...|+++|++.++|+.+-||..||+
T Consensus 389 P~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----- 462 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----- 462 (593)
T ss_pred CeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe-----
Confidence 49999999998888888885 33457889999999999988877665 789999999999999999999999997
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSFF 229 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~~ 229 (846)
||-.. |.-+..+|.||+||.++ |..|.+||.++.
T Consensus 463 ---yD~p~----------s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 463 ---YDFPQ----------SDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred ---cCCCc----------hhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 66433 56678899999999986 999999999554
No 90
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=7.3e-06 Score=99.83 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+-+..|++.|..+|++.. .||||..+.+..+.+...|...+ +....||+..+..++..+...+... +|.||||
T Consensus 433 ~K~~Aii~ei~~~~~~Gr----pVLV~t~sv~~se~ls~~L~~~g--i~~~vLnak~~~~Ea~ii~~Ag~~G-~VtIATn 505 (908)
T PRK13107 433 EKYQAIIKDIKDCRERGQ----PVLVGTVSIEQSELLARLMVKEK--IPHEVLNAKFHEREAEIVAQAGRTG-AVTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEeCcHHHHHHHHHHHHHCC--CCeEeccCcccHHHHHHHHhCCCCC-cEEEecC
Confidence 446778888989987654 49999999999999999998755 7788899999988888777666332 3999999
Q ss_pred CCccccCCC
Q 003111 162 IAESSVTIP 170 (846)
Q Consensus 162 IAEtsiTIp 170 (846)
+|.+|..|.
T Consensus 506 mAGRGTDIk 514 (908)
T PRK13107 506 MAGRGTDIV 514 (908)
T ss_pred CcCCCccee
Confidence 999998765
No 91
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=98.19 E-value=4.9e-06 Score=94.82 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+.+....++.. ...+||||.+-.++.-+++......+++.++.|||.|.+..+..+++.| ..+--|++||+||.+++
T Consensus 302 ~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGL 379 (758)
T KOG0343|consen 302 DMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGL 379 (758)
T ss_pred HHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccC
Confidence 45555555554 2469999999999998888887777789999999999999988887766 34557899999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSF 228 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~ 228 (846)
.+|.|..||- || +|..-++..+|.||+.|-.. |.|+-+.+...
T Consensus 380 DFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 380 DFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred CCcccceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 9999999994 33 34456788899999999875 99998877654
No 92
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.11 E-value=1.6e-05 Score=99.12 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CCCeEEEEecCCCccc
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KSHRKVILATNIAESS 166 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~~rKVIlATnIAEts 166 (846)
.+.++.+... +..+|||..+...+..+.+.|.... ++.+..+||+|+..++..+...| ++.-+|+|||+++..|
T Consensus 483 ~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~-Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 483 WLIDFLKSHR--SEKVLVICAKAATALQLEQALRERE-GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhcc-CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 3444444432 3469999999999999999995432 38899999999999988877665 2457999999999999
Q ss_pred cCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcEEEeeccc
Q 003111 167 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQVYRLVTKS 227 (846)
Q Consensus 167 iTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c~rLyt~~ 227 (846)
++++.+.+||. ||.. -+-....||.||+||-+. -..|.++.+.
T Consensus 560 lNlq~a~~VIn--------fDlP----------~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 560 RNFQFASHLVL--------FDLP----------FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred CCcccccEEEE--------ecCC----------CCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 99999999996 4433 245678899999998664 3456666664
No 93
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=98.08 E-value=7.6e-07 Score=91.17 Aligned_cols=59 Identities=31% Similarity=0.732 Sum_probs=48.9
Q ss_pred CCccccccccccccCcCCCCCCCCccccCC-----------------------------CCCcccccccc---------c
Q 003111 558 ETPGEAPLCVYFINGSCNRGTGCPFSHSLQ-----------------------------AKRPACKFFYS---------L 599 (846)
Q Consensus 558 ~~~~k~~~C~~f~~G~C~~G~~C~FsH~~~-----------------------------~~~~~C~~f~~---------~ 599 (846)
..+.++++|-.|..|.|.+|+.|.|+|+.. ....+|+||.. +
T Consensus 80 gvdpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 80 GVDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred ccCchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 347799999999999999999999999964 12338999986 3
Q ss_pred CCCCCC-CCCCCCCCCCC
Q 003111 600 QGCRNG-DSCIFSHDLGQ 616 (846)
Q Consensus 600 g~C~~G-~~C~f~H~~~~ 616 (846)
+.|.+| .+|.|.|..|.
T Consensus 160 W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeCCCCCceeeeeeccCc
Confidence 479997 79999998765
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=2.6e-05 Score=95.09 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATN 161 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATn 161 (846)
-++.|++.+...|.+.. .||||..+.++.+.+...|...+ +....||+. ..+++..+..+ .+.-.|.||||
T Consensus 415 K~~aI~~~I~~~~~~gr----pVLIft~Si~~se~Ls~~L~~~g--i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATN 486 (830)
T PRK12904 415 KFDAVVEDIKERHKKGQ----PVLVGTVSIEKSELLSKLLKKAG--IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHhcCC----CEEEEeCcHHHHHHHHHHHHHCC--CceEeccCc--hHHHHHHHHHhcCCCceEEEecc
Confidence 46777788877776543 59999999999999999997654 778889996 44454444333 45679999999
Q ss_pred CCccccCCCCe------------------------------EEEEeCCCcceeeecCCCCccccee-eecCHhhHHhhcC
Q 003111 162 IAESSVTIPKV------------------------------AYVIDSCRSLQVFWDVNRKIDSAEL-VWVSQSQAEQRRG 210 (846)
Q Consensus 162 IAEtsiTIp~V------------------------------~yVIDsG~~k~~~yd~~~~~~~l~~-~~ISkasa~QR~G 210 (846)
+|.+|+.|+== .-|... -|.....+ ..-|+--=.|=+|
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------GGLhVigTerhesrRid~QlrG 555 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEA-----------GGLHVIGTERHESRRIDNQLRG 555 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHc-----------CCCEEEecccCchHHHHHHhhc
Confidence 99999887621 001111 12222211 2446666789999
Q ss_pred CCCCCC-CCcEEEeeccc
Q 003111 211 RTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 211 RaGR~~-~G~c~rLyt~~ 227 (846)
||||.+ ||.+-...+-+
T Consensus 556 RagRQGdpGss~f~lSle 573 (830)
T PRK12904 556 RSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred ccccCCCCCceeEEEEcC
Confidence 999999 58875555543
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.94 E-value=2.9e-05 Score=94.47 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCcEEEEecCCccH--HHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEE--eC--CCcceeeec
Q 003111 115 LEQQWHLMKPLSSFFKVHILHSSVDT--EQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVI--DS--CRSLQVFWD 187 (846)
Q Consensus 115 I~~~~~~L~~~~~~~~v~~Lhs~l~~--~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVI--Ds--G~~k~~~yd 187 (846)
++++.+.|....++..+..+|+++.. ++.+.+++.+ .|...|+|+|++++.++++|+|..|+ |. .+.. .-|+
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~-pdfr 517 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS-PDFR 517 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC-Cccc
Confidence 34455555544456789999999853 4455555444 67789999999999999999999885 32 2211 1111
Q ss_pred CCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEE
Q 003111 188 VNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 222 (846)
Q Consensus 188 ~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~r 222 (846)
...+ .=+...|++|||||.. +|.|+-
T Consensus 518 a~Er---------~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 518 ASER---------TFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred hHHH---------HHHHHHHHHhhccCCCCCCEEEE
Confidence 1111 1245789999999944 688874
No 96
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.94 E-value=1.2e-05 Score=86.62 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=90.2
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.-+||..+...+|-++..+...+ +..+.+|+.|.++.+..++..| .|.-|.+|||+..-++|.|+.|.+||+.-+.|
T Consensus 324 QsIIFCNS~~rVELLAkKITelG--yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELG--YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhcc--chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 36899999999999999887765 7788899999999998888654 78899999999999999999999999865543
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKSF 228 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~~ 228 (846)
+-.+..+|.||+||-+. |..+-|.|-++
T Consensus 402 ------------------~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 402 ------------------NAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred ------------------CHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 34567899999999885 99999988653
No 97
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.92 E-value=8.2e-05 Score=91.57 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=112.1
Q ss_pred cEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHh
Q 003111 129 FKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 207 (846)
Q Consensus 129 ~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~Q 207 (846)
+.+-..|++|+..++..+.+.+ .|.++|.++|--.+-++.+|.=.++|- -..+|||..| +...+|.-...|
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg----~w~elsp~dv~q 679 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKG----RWTELSPLDVMQ 679 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccC----ccccCCHHHHHH
Confidence 4466679999988887777665 788999999999999999999777772 2457999987 356789999999
Q ss_pred hcCCCCCCCC-----CcEEEeecccccc-c-cccc-ccchhhhhhhH-----HHHHHHhhhhcccCCChhhhh------c
Q 003111 208 RRGRTGRTCD-----GQVYRLVTKSFFG-T-LEDH-ECPAILRLSLR-----LQVLLICCAESKAISDPKVLL------Q 268 (846)
Q Consensus 208 R~GRaGR~~~-----G~c~rLyt~~~~~-~-l~~~-~~PEI~r~~L~-----~~vL~lk~~~~~~l~~~~~~l------~ 268 (846)
|.|||||.+- |+...=+++-.|- + |.+. ++++-.-+.|. +++|-+++. .+....+ -
T Consensus 680 mlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~-----~d~~~wl~yTylyv 754 (1674)
T KOG0951|consen 680 MLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSA-----RDAVDWLGYTYLYV 754 (1674)
T ss_pred HHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhH-----HHHHhhhcceeeEE
Confidence 9999999885 4333334443332 2 2222 22222222222 234432221 1110000 0
Q ss_pred cccCCCCh-----------------hhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccc
Q 003111 269 KALDPPYP-----------------EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLS 316 (846)
Q Consensus 269 ~~idpP~~-----------------~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPld 316 (846)
..+.-|.. +.+..|...|.+.|.|--+...|-++.|.+|+.-+.+-+.
T Consensus 755 Rm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~ 819 (1674)
T KOG0951|consen 755 RMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYIT 819 (1674)
T ss_pred eeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeee
Confidence 11111211 4578889999999998653223667789999999998874
No 98
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.91 E-value=2.5e-05 Score=88.48 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=88.8
Q ss_pred cceEEEcCcHHHHHHHHHHhc-CC-CCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 103 KSILVFLPTYYALEQQWHLMK-PL-SSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~-~~-~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
..+|+|..+.+...+++..|. .. ...+++-.+.|+++...+....+.+ +|...|+||+++..+|+.|.||..||+
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN-- 507 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN-- 507 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--
Confidence 369999999999999988876 22 2345666688999988887776655 788999999999999999999999997
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
||+.. |--+..+|+||+||.+. |.||.|.++.
T Consensus 508 ------Yd~P~----------~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 508 ------YDPPA----------SDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred ------cCCCc----------hhhHHHHhhcccccccCCceEEEeeccc
Confidence 78754 45567899999999885 9999998875
No 99
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.88 E-value=5.4e-05 Score=84.22 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=87.9
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.|-=+|+.-+++++++++..|.-.+ +....+|++|-..++-.+.+.- .+..-||+||+--.-+|.-|+|+|||.
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~G--i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--- 329 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIAG--IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--- 329 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhcC--cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe---
Confidence 5788999999999999999997655 7788899999888777666543 677899999999999999999999995
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEe-ecccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRL-VTKSFFG 230 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rL-yt~~~~~ 230 (846)
||+.. +-|-.-|-.|||||.+.--.-|| |++++-+
T Consensus 330 -----W~~~q----------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 330 -----WSPSQ----------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred -----cCchh----------hhHHHHHhccccccCCCccceeeeecccchH
Confidence 66554 34667799999999886445555 6665543
No 100
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.84 E-value=2.7e-05 Score=78.49 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=110.0
Q ss_pred eeecCccchhhhhhccccC-CcceeccCCCccceeecCCcccchhhhcccccchhhhccCCC------CCCCCcceeEEE
Q 003111 651 LLLDDTDMHFSANLACLYD-PSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGD------NPIPWKEVKCVL 723 (846)
Q Consensus 651 lvl~~~~l~fs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 723 (846)
|++.+-|++||..++.... +..++||+--+...+..--|.+..++..|..+--.++=+=.. ..+...+..+|+
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 4577889999999999988 788888877666666555556666666666655544432221 233467889999
Q ss_pred ecCCccc-----cccchhHHHHHHHHHHHHHHHHHHHhhccCcEEEEEEcccee-ehhhHHhhhccceeecccCCCCCcc
Q 003111 724 WYPSLES-----YSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKF-AQLQVEKLARDSFFFLSESFPFDEM 797 (846)
Q Consensus 724 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (846)
|+++..- ...+-.-.+.||..||+. |-++|+. +=+|.||+.+... ..-|+|++|++.-|.|.++++||..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~---~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKP---DGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPS 156 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCC---CCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHH
Confidence 9998876 334445667899999995 5556655 7899999999876 8999999999999999999999977
Q ss_pred cc
Q 003111 798 SF 799 (846)
Q Consensus 798 ~~ 799 (846)
.|
T Consensus 157 ~y 158 (166)
T PF10354_consen 157 DY 158 (166)
T ss_pred HC
Confidence 65
No 101
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.80 E-value=0.00022 Score=86.81 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=141.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC------------CC--C-------cEEEEecCCccHHHHHHHhhcc-CCCeEEEEec
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL------------SS--F-------FKVHILHSSVDTEQALMAMKIC-KSHRKVILAT 160 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~------------~~--~-------~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlAT 160 (846)
..||||++++.+-.+.++.|... .. + ..+-.-|++|.-+++..+.+.+ .|..+|++||
T Consensus 350 ~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cT 429 (1230)
T KOG0952|consen 350 HQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCT 429 (1230)
T ss_pred CeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEec
Confidence 35999999998776666655310 01 1 2234458999988887777666 6789999999
Q ss_pred CCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeecccc---cccccc
Q 003111 161 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF---FGTLED 234 (846)
Q Consensus 161 nIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~~~---~~~l~~ 234 (846)
.-..=++.+|.-.++| .-+..||+..|... -.+--...|.-|||||.+ .|..+-+-+.+. |.+|--
T Consensus 430 aTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 430 ATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT 501 (1230)
T ss_pred ceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc
Confidence 9999999999987777 23467998887553 335566789999999987 487777766643 444322
Q ss_pred cccc---------------hhhh---hhhHHHHHHHhhh--------hcccCCChhhhhccccCCCCh-----hhHHHHH
Q 003111 235 HECP---------------AILR---LSLRLQVLLICCA--------ESKAISDPKVLLQKALDPPYP-----EVVGDAL 283 (846)
Q Consensus 235 ~~~P---------------EI~r---~~L~~~vL~lk~~--------~~~~l~~~~~~l~~~idpP~~-----~~I~~Al 283 (846)
.+.| ||-- ++.++.|=-|++- .+...|... .....-|.. +.+..++
T Consensus 502 ~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~---~~l~~dp~l~s~~~~l~~~~~ 578 (1230)
T KOG0952|consen 502 GQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISY---EELEPDPRLESHRRELCLVAA 578 (1230)
T ss_pred CCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhh---hcccCCchHHHHHHHHHHHHH
Confidence 2221 2211 1222222211110 011111111 111222322 2345555
Q ss_pred HHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcc-cCcchhhHHhHhhhc
Q 003111 284 DLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE-IGMLREGILLGILMD 343 (846)
Q Consensus 284 ~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~-~gCl~e~l~IaA~Ls 343 (846)
..|.....+--+...+.+..|.+||.|+.+-|.-.--+.++.... +--.+++|-++++-+
T Consensus 579 ~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~ae 639 (1230)
T KOG0952|consen 579 MELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAE 639 (1230)
T ss_pred HHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhH
Confidence 566555433221223667789999999999999888888888877 556677777777643
No 102
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.79 E-value=5e-06 Score=58.35 Aligned_cols=24 Identities=38% Similarity=1.050 Sum_probs=15.4
Q ss_pred cccccccccc-CcCCCCCCCCcccc
Q 003111 562 EAPLCVYFIN-GSCNRGTGCPFSHS 585 (846)
Q Consensus 562 k~~~C~~f~~-G~C~~G~~C~FsH~ 585 (846)
++.+|++|+. |.|.+|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5667777765 77777777777775
No 103
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.78 E-value=8.7e-06 Score=82.85 Aligned_cols=63 Identities=32% Similarity=0.739 Sum_probs=54.6
Q ss_pred CCCCCCCCCCccccccccccccCcCCCCCCCCccccCC-CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 550 QDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 550 ~~~~~~~~~~~~k~~~C~~f~~G~C~~G~~C~FsH~~~-~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
++..++.++++.+..+|.-|++|+|++.+.|..||... ++-+.|+||+- |.|.+. +|+|.|..
T Consensus 220 kgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfll-gkcnnp-ncryvhih 283 (377)
T KOG1492|consen 220 KGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLL-GKCNNP-NCRYVHIH 283 (377)
T ss_pred CCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhhh-ccCCCC-CceEEEEe
Confidence 78888889999999999999999999999999999986 44567999998 999876 89999853
No 104
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=97.73 E-value=8.2e-05 Score=90.83 Aligned_cols=106 Identities=16% Similarity=0.334 Sum_probs=88.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.|+++||+...+.+..+.+.|...+ +....|||+.++.++...+.-+ .+.-+++|||.++.+++.+.++-.||+
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag--~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--- 687 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAG--YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--- 687 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcC--cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE---
Confidence 5789999999999999999998544 6666799999999988877655 567899999999999999999999997
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
||-..... ...+|.||+||+++ |.|+-+.+.+
T Consensus 688 -----yd~pnh~e----------dyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 688 -----YDFPNHYE----------DYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred -----cccchhHH----------HHHHHhcccccCCccceeEEEeChH
Confidence 55444432 26789999999886 9888888773
No 105
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.66 E-value=0.00012 Score=90.71 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+.+..+-...+ .+.++|+...+.+.+++...|+..+ +....+|++|++.+|+.+.+.+ .+..+||+||=.-.-+|
T Consensus 474 ~~~~~~~~~~~--~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 474 DILEESKLRHP--DQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred HHHHHhhhcCC--CCCeEEEeCCcchHHHHHHHHHHhc--hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 34444444444 4689999999999999999998766 6788899999999998887765 67789999999899999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
.-|||++||-.++-| |=...-|=+|||||-+ +-.|.-+|+-.++.
T Consensus 550 dK~DVR~ViH~~lPk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 550 DKPDVRFVIHYSLPK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred CCCceeEEEECCCch------------------hHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 999999999877644 3345569999999987 58888888876543
No 106
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.63 E-value=0.00013 Score=81.32 Aligned_cols=104 Identities=18% Similarity=0.298 Sum_probs=83.7
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..+||..+..+.+.+.+.+...+ ..+.+++||++..+++++.-++.+ +...|.+++|++|.+++.|-++-|+|+.-+.
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlp 586 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLP 586 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecC
Confidence 57999999999999988887654 468999999999787776666655 5678999999999999999999999975432
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeec
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVT 225 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt 225 (846)
=.|.+..+|.||+||... |..+.|..
T Consensus 587 ------------------d~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 587 ------------------DDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ------------------cccchhhhhhhccchhhhcceeEEEee
Confidence 234566789999999765 77777753
No 107
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.62 E-value=3.1e-05 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.970 Sum_probs=18.4
Q ss_pred ccccccccccCcCCCCCCCCcccc
Q 003111 562 EAPLCVYFINGSCNRGTGCPFSHS 585 (846)
Q Consensus 562 k~~~C~~f~~G~C~~G~~C~FsH~ 585 (846)
+..+|++|.+|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 456788887788888888888886
No 108
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.61 E-value=0.00062 Score=81.75 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+.+..|++.|..+|.+.. .|||...+.++-+.+...|...+ +....|.+.-..++...+-++. ..-.|.||||
T Consensus 411 ~k~~Aii~ei~~~~~~Gr----PVLVgt~sI~~SE~ls~~L~~~g--I~h~vLNAk~~~~EA~IIa~AG-~~gaVTIATN 483 (764)
T PRK12326 411 EKNDAIVEHIAEVHETGQ----PVLVGTHDVAESEELAERLRAAG--VPAVVLNAKNDAEEARIIAEAG-KYGAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEeCCHHHHHHHHHHHHhCC--CcceeeccCchHhHHHHHHhcC-CCCcEEEEec
Confidence 346778888888888754 49999999999999999998765 4555566654444443333332 1248999999
Q ss_pred CCccccCCC----------Ce-----EEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeec
Q 003111 162 IAESSVTIP----------KV-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 225 (846)
Q Consensus 162 IAEtsiTIp----------~V-----~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt 225 (846)
+|.++-.|. +| -+||=+.+ .-|+--=.|=+|||||.+ ||.+-.+.+
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeEEEE
Confidence 999997664 11 24543322 235555679999999998 588655554
Q ss_pred c
Q 003111 226 K 226 (846)
Q Consensus 226 ~ 226 (846)
-
T Consensus 546 l 546 (764)
T PRK12326 546 L 546 (764)
T ss_pred c
Confidence 4
No 109
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.60 E-value=1.4e-05 Score=56.10 Aligned_cols=25 Identities=40% Similarity=0.903 Sum_probs=20.5
Q ss_pred CCcccccccccCCCCCCCCCCCCCC
Q 003111 589 KRPACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 589 ~~~~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
++++|++|.+.|.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5789999999999999999999996
No 110
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00023 Score=78.79 Aligned_cols=118 Identities=17% Similarity=0.328 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhc-cCCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI-CKSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAEtsi 167 (846)
+++..++.+ -...+||..|.+.+..+...|..++ +.+..+|+.|.+.++..+.+. +.|.-+|+++|+.+.+|+
T Consensus 254 ~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~--~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 254 DTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHG--FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred cHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCC--ceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 456666662 2468999999999999999995544 889999999999998877754 477889999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
.|-++..||+ ||... -+.+..+|+||+||-+ +|....+.++.+-.
T Consensus 328 dv~~~slvin--------ydlP~----------~~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 328 DVQQVSLVVN--------YDLPA----------RKENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred chhhcceeee--------ecccc----------chhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 9999999996 55443 4667789999999976 59999988886543
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.48 E-value=0.00031 Score=85.14 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=68.3
Q ss_pred EEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhh
Q 003111 130 KVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 208 (846)
Q Consensus 130 ~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR 208 (846)
.+-..|++++.++++.+...+ .|..+|++||+....++..|..+|+|-. |. ......++.+.+||
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira---------P~-----~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA---------PY-----VGREFLTRLEYKQM 589 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC---------Cc-----cccchhhhhhHHhh
Confidence 355568999999998876554 7889999999999999999999999932 11 22345688999999
Q ss_pred cCCCCCCC---CCcEEEeecccc
Q 003111 209 RGRTGRTC---DGQVYRLVTKSF 228 (846)
Q Consensus 209 ~GRaGR~~---~G~c~rLyt~~~ 228 (846)
.|||||.+ -|.++-++.+..
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccc
Confidence 99999996 399998888754
No 112
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00012 Score=78.08 Aligned_cols=100 Identities=23% Similarity=0.403 Sum_probs=64.7
Q ss_pred ccccccc-cCcCCC---CCCCCcc---ccCC----------CCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 003111 564 PLCVYFI-NGSCNR---GTGCPFS---HSLQ----------AKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTC 626 (846)
Q Consensus 564 ~~C~~f~-~G~C~~---G~~C~Fs---H~~~----------~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~~~~~ 626 (846)
.+|.-|. .|.|.. |+.|.|+ |+.. .++.+|+.|.+.|.|.||.+|.|.|..............
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~ 310 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASL 310 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccccccccc
Confidence 8899996 699999 9999999 9875 456799999999999999999999986443222211000
Q ss_pred CCCCCCcccccccccCCCCCCCceeeecCccchhhhhh
Q 003111 627 LPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANL 664 (846)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~lvl~~~~l~fs~~~ 664 (846)
---.+...........|.+.. .-...+.++++|+...
T Consensus 311 ~y~~~~crt~~~~g~~p~g~~-~c~~~dkkn~~~s~~~ 347 (351)
T COG5063 311 GYLDGPCRTRAKGGAFPSGGA-VCKSFDKKNLDFSVKA 347 (351)
T ss_pred cccccccccccccCccCCCCc-hhhccccchhhhhhhh
Confidence 011122222222333343322 2344567788887654
No 113
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.43 E-value=0.00075 Score=82.17 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+-+..|++.|...|.+.. .|||...+.++-+.+...|...+ +..-.|.+.-...+...+-++. ..-.|.||||
T Consensus 410 ~K~~Aii~ei~~~~~~gq----PVLVgT~SIe~SE~ls~~L~~~g--i~h~vLNAk~~e~EA~IIa~AG-~~GaVTIATN 482 (925)
T PRK12903 410 AKWKAVVKEVKRVHKKGQ----PILIGTAQVEDSETLHELLLEAN--IPHTVLNAKQNAREAEIIAKAG-QKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHhcCC----CEEEEeCcHHHHHHHHHHHHHCC--CCceeecccchhhHHHHHHhCC-CCCeEEEecc
Confidence 346677788888887644 49999999999999999997755 4444465543333343332322 1248999999
Q ss_pred CCccccCCCCeE--------EEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecc
Q 003111 162 IAESSVTIPKVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTK 226 (846)
Q Consensus 162 IAEtsiTIp~V~--------yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~ 226 (846)
+|.+|-.|.==. |||-+.+ +-|+--=.|-+|||||.+ ||.+-...+-
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEec
Confidence 999997775222 5553322 123444469999999998 5876444443
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.41 E-value=0.00028 Score=86.84 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=78.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhh----c-cCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK----I-CKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~----~-~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
++.|||.+.+...+.++...|+.... .++.|||.+...++....+ . ..+.-.|||||-+.|.|++|+ ...+|
T Consensus 440 ~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI 516 (733)
T COG1203 440 GKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI 516 (733)
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee
Confidence 47899999999999999999987764 7999999998776654432 1 234569999999999999985 55555
Q ss_pred eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeecc
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTK 226 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~ 226 (846)
+....-.+..||+||++|.+ +|..|..-..
T Consensus 517 --------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 517 --------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred --------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 33446678999999999998 4666555433
No 115
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.36 E-value=0.00064 Score=78.27 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=81.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHH---HHHhhccCCCeEEEEecCCCccccCCCCeEEEEeC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQA---LMAMKICKSHRKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~---~~~~~~~~~~rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
+||.+|=.. ..+|-.+...++..+ ..++..+||+||++-+ ...+..+.+.-+|+|||+...-++.+ +|+=||=+
T Consensus 357 ~GDCvV~FS-kk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~ 433 (700)
T KOG0953|consen 357 PGDCVVAFS-KKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFY 433 (700)
T ss_pred CCCeEEEee-hhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEe
Confidence 467666543 457777777776654 3557889999998753 33345556778999999999999988 66666622
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC----CcEEEeeccc
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD----GQVYRLVTKS 227 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~----G~c~rLyt~~ 227 (846)
-+. .|+ --.+..|+-+++.|-+|||||-+. |..=.|+.++
T Consensus 434 sl~---Kys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 434 SLI---KYS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ecc---cCC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 222 233 345688999999999999999874 7777776664
No 116
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.35 E-value=0.00015 Score=78.21 Aligned_cols=60 Identities=28% Similarity=0.657 Sum_probs=51.5
Q ss_pred ccccccccccccCcCCCCCCCCccccCC-CC--CcccccccccCCCCCCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQ-AK--RPACKFFYSLQGCRNGDSCIFSHDLGQPVL 619 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~-~~--~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~ 619 (846)
....++|++|..|.|..|..|.|+|+.. .+ .+.|++|...|.|..|..|.|.|..+....
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~ 163 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFA 163 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCccccc
Confidence 5689999999999999999999999986 33 568999966699999999999998744433
No 117
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.34 E-value=0.00011 Score=75.03 Aligned_cols=59 Identities=31% Similarity=0.784 Sum_probs=50.9
Q ss_pred cccccccccc-cCcCCCCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 003111 561 GEAPLCVYFI-NGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPS 621 (846)
Q Consensus 561 ~k~~~C~~f~-~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~ 621 (846)
...+-||||. +|.|-+|..|+|.|... ++.+|.-|+. |.|.+.++|-.+|...+.+-..
T Consensus 204 psavycryynangicgkgaacrfvhept-rkticpkfln-grcnkaedcnlsheldprripa 263 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPT-RKTICPKFLN-GRCNKAEDCNLSHELDPRRIPA 263 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeecccc-ccccChHHhc-CccCchhcCCcccccCccccch
Confidence 3678899996 69999999999999985 5569999999 9999999999999987665444
No 118
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.32 E-value=0.00074 Score=78.73 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATN 161 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATn 161 (846)
.+.+-...+-+|.+.-|.. ..|||.....-.+.++..|.+.+ +.+..+.|.|.+.++..++... .-.-||+|||+
T Consensus 255 emrlklq~L~~vf~~ipy~--QAlVF~~~~sra~~~a~~L~ssG--~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFKSIPYV--QALVFCDQISRAEPIATHLKSSG--LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred HHHHHHHHHHHHHhhCchH--HHHhhhhhhhhhhHHHHHhhccC--CCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 3556667778888776653 58999999988889999998765 8899999999999987776543 44569999999
Q ss_pred CCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 162 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 162 IAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
.-.++|.-|+|..||+. |+.- .-....+|.|||||-+. |....++-.+
T Consensus 331 LtaRGIDa~~vNLVVNi--------D~p~----------d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNI--------DAPA----------DEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred hhhccCCccccceEEec--------CCCc----------chHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999973 3322 34467799999999887 9888876553
No 119
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.23 E-value=0.00012 Score=79.30 Aligned_cols=54 Identities=24% Similarity=0.539 Sum_probs=44.9
Q ss_pred cccccccccccCcCCCCCC-CCccccCC------CCCcccccccccCCCCCCCCCCCCCCCCC
Q 003111 561 GEAPLCVYFINGSCNRGTG-CPFSHSLQ------AKRPACKFFYSLQGCRNGDSCIFSHDLGQ 616 (846)
Q Consensus 561 ~k~~~C~~f~~G~C~~G~~-C~FsH~~~------~~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 616 (846)
-..++||-|++|.|.+||. |+|.|... .+-.-|.-|++ |.|..- +|+|.|....
T Consensus 35 l~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~k-grCsR~-nCkylHpp~h 95 (331)
T KOG2494|consen 35 LTLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQK-GRCSRE-NCKYLHPPQH 95 (331)
T ss_pred hHHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEecccc-CccCcc-cceecCCChh
Confidence 3578999999999999999 99999875 12226999999 999987 6999997543
No 120
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.11 E-value=0.0014 Score=84.21 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=62.6
Q ss_pred ceEEEcCcH---HHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEe----cCCCccccCCCC-eEEE
Q 003111 104 SILVFLPTY---YALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA----TNIAESSVTIPK-VAYV 175 (846)
Q Consensus 104 ~ILVFLPg~---~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA----TnIAEtsiTIp~-V~yV 175 (846)
..|||+++. +.++++...|...+ +.+..+||+++.+ .+.....|..+|+|| ||+|.+||.||+ |+||
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g--~~a~~lhg~~~~~---~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHG--VKAVAYHATKPKE---DYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCC--ceEEEEeCCCCHH---HHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 589999998 89999999997654 8899999999742 222334688899999 599999999999 8999
Q ss_pred EeCCCccee
Q 003111 176 IDSCRSLQV 184 (846)
Q Consensus 176 IDsG~~k~~ 184 (846)
|..|.-+.+
T Consensus 403 I~~~~P~~~ 411 (1171)
T TIGR01054 403 VFLGVPKFK 411 (1171)
T ss_pred EEECCCCEE
Confidence 999987653
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.01 E-value=0.0024 Score=78.49 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+.+..|++-|..+|.+.. .|||-..+.+.-+.+..+|...+ +..-.|.+.-...+...+-++.. .-.|.||||
T Consensus 433 eK~~Ai~~ei~~~~~~Gr----PVLVGT~SVe~SE~ls~~L~~~g--i~h~VLNAk~~~~EA~IIa~AG~-~GaVTIATN 505 (913)
T PRK13103 433 EKYAAIITDIKECMALGR----PVLVGTATIETSEHMSNLLKKEG--IEHKVLNAKYHEKEAEIIAQAGR-PGALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHhCCC----CEEEEeCCHHHHHHHHHHHHHcC--CcHHHhccccchhHHHHHHcCCC-CCcEEEecc
Confidence 457788888999998764 49999999999999999997655 23233444433344444333321 238999999
Q ss_pred CCccccCC
Q 003111 162 IAESSVTI 169 (846)
Q Consensus 162 IAEtsiTI 169 (846)
+|.+|-.|
T Consensus 506 MAGRGTDI 513 (913)
T PRK13103 506 MAGRGTDI 513 (913)
T ss_pred CCCCCCCE
Confidence 99999776
No 122
>PRK09401 reverse gyrase; Reviewed
Probab=96.97 E-value=0.0015 Score=83.74 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred ceEEEcCcHHH---HHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEe----cCCCccccCCCC-eEEE
Q 003111 104 SILVFLPTYYA---LEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA----TNIAESSVTIPK-VAYV 175 (846)
Q Consensus 104 ~ILVFLPg~~e---I~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA----TnIAEtsiTIp~-V~yV 175 (846)
..|||+|+.+. ++.+.+.|...+ +.+..+||+| ++.+.+...|..+|+|| ||+|.+||.||+ |+||
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~g--i~v~~~hg~l----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLG--INAELAISGF----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCC--CcEEEEeCcH----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 58999998666 889999887754 8899999999 22233334688899999 799999999999 8999
Q ss_pred EeCCCcce
Q 003111 176 IDSCRSLQ 183 (846)
Q Consensus 176 IDsG~~k~ 183 (846)
|..|.-+.
T Consensus 404 I~y~vP~~ 411 (1176)
T PRK09401 404 IFYGVPKF 411 (1176)
T ss_pred EEeCCCCE
Confidence 99998773
No 123
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=96.97 E-value=0.0005 Score=75.88 Aligned_cols=79 Identities=24% Similarity=0.459 Sum_probs=60.6
Q ss_pred CCCCCCCCCCc--cccccccccc-cCcCCCCCCCCccccC-CCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003111 550 QDKAVNGSETP--GEAPLCVYFI-NGSCNRGTGCPFSHSL-QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFT 625 (846)
Q Consensus 550 ~~~~~~~~~~~--~k~~~C~~f~-~G~C~~G~~C~FsH~~-~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~~~~ 625 (846)
+++.+...++. .+...|+||. .|.|.+|.+|.|.|.. +.+...|++|.. |.|+.|+.|++.|........+..++
T Consensus 90 kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~-g~c~~g~~c~~~h~~~~~c~~y~~gf 168 (325)
T KOG1040|consen 90 KGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKE-GFCRGGPSCKKRHERKVLCPPYNAGF 168 (325)
T ss_pred ccCcCcchhhhhhcccccccccccccccccccCCcccCCChhhhhhccchhhh-ccCCCcchhhhhhhcccCCCchhhhh
Confidence 56666666542 3455687775 6999999999999998 567779999999 99999999999999875555554566
Q ss_pred CCCC
Q 003111 626 CLPE 629 (846)
Q Consensus 626 ~~~~ 629 (846)
|...
T Consensus 169 C~~g 172 (325)
T KOG1040|consen 169 CPKG 172 (325)
T ss_pred ccCC
Confidence 6443
No 124
>PRK14701 reverse gyrase; Provisional
Probab=96.93 E-value=0.0012 Score=86.69 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=77.0
Q ss_pred ceEEEcCcHHHH---HHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEec----CCCccccCCCC-eEE
Q 003111 104 SILVFLPTYYAL---EQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT----NIAESSVTIPK-VAY 174 (846)
Q Consensus 104 ~ILVFLPg~~eI---~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlAT----nIAEtsiTIp~-V~y 174 (846)
..|||+++.+.+ ++++..|...+ +.+..+||+ +...++.| .|...|+||| ++|.+||.+|+ |+|
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~G--i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vry 404 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDG--FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRF 404 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCC--CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCE
Confidence 589999997754 78888887654 899999996 33334433 6888999999 69999999999 999
Q ss_pred EEeCCCcceee----ecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 175 VIDSCRSLQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 175 VIDsG~~k~~~----yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
||..|.-|.++ |...... .+. ...+.++.|||||.+ ++.|+-.|..+
T Consensus 405 vi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 405 AVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred EEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHH
Confidence 99998876332 2211111 111 234667788888876 46665434433
No 125
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.92 E-value=0.00061 Score=47.28 Aligned_cols=24 Identities=46% Similarity=0.913 Sum_probs=21.1
Q ss_pred CCcccccccccCCCCCCCCCCCCCC
Q 003111 589 KRPACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 589 ~~~~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
+..+|++|.+ |.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~-g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKR-GYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccC-CCCCCCCCcCCCCc
Confidence 4568999955 99999999999996
No 126
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.90 E-value=0.0054 Score=76.02 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+-+..|++-|..+|.+.. .|||-..+.+.=+.+.++|...+ +..-.|.+.....+...+-.+.. .-.|.||||
T Consensus 612 eK~~Aii~ei~~~~~~Gr----PVLVGT~SVe~SE~lS~~L~~~g--I~H~VLNAK~h~~EAeIVA~AG~-~GaVTIATN 684 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGR----PVLVGTTSVEISELLSRMLKMRK--IPHNVLNAKLHQKEAEIVAEAGQ-PGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHCCC----CEEEEeCcHHHHHHHHHHHHHcC--CcHHHhhccchhhHHHHHHhcCC-CCcEEEecc
Confidence 457888899999998764 49999999988888888887654 33333444433444444433321 237999999
Q ss_pred CCccccCCC--------CeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecc
Q 003111 162 IAESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTK 226 (846)
Q Consensus 162 IAEtsiTIp--------~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~ 226 (846)
+|.+|-.|. |=-+||=+.+ .-|+--=.|=+|||||.+ ||.+-.+.+-
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lSL 740 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVSL 740 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEEEc
Confidence 999997775 2235553322 235556679999999999 5886444443
No 127
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.0015 Score=75.12 Aligned_cols=87 Identities=22% Similarity=0.431 Sum_probs=64.2
Q ss_pred ccCCCCccccceecccCccccccccchhHHHHHHHHHHhhhhhccccccCCCCCCCCCCCCccccccccccccCcCCCCC
Q 003111 499 NEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGT 578 (846)
Q Consensus 499 ~~~~~~k~~~R~~~~~~Y~~~n~f~~~eaae~l~~iiKk~r~q~~~~~~~~~~~~~~~~~~~~k~~~C~~f~~G~C~~G~ 578 (846)
..+-+.+.+-+.-|+=||++|+. +-+...+.+-.+..++|--|.+|.|.+||
T Consensus 200 Kir~C~R~~shDwteCPf~HpgE----------------------------kARRRDPRkyhYs~tpCPefrkG~C~rGD 251 (528)
T KOG1595|consen 200 KIRRCSRPRSHDWTECPFAHPGE----------------------------KARRRDPRKYHYSSTPCPEFRKGSCERGD 251 (528)
T ss_pred eecccCCccCCCcccCCccCCCc----------------------------ccccCCcccccccCccCcccccCCCCCCC
Confidence 33444555666667777777665 11112233447889999999999999999
Q ss_pred CCCccccCC--------CCCcccccccccCCCCCCCCCCCCCCCCCC
Q 003111 579 GCPFSHSLQ--------AKRPACKFFYSLQGCRNGDSCIFSHDLGQP 617 (846)
Q Consensus 579 ~C~FsH~~~--------~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 617 (846)
.|.|+|+.. .++..||-- |+|.. .-|.|+|.....
T Consensus 252 ~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 252 SCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred ccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence 999999984 678889885 78999 699999986544
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.86 E-value=0.0059 Score=75.37 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+.+..|++.+..+|++.. .|||-..+.+.-+.+...|...+ +....|.+.-...+...+-++.. .-.|.||||
T Consensus 552 ~k~~ai~~ei~~~~~~gr----PvLigt~si~~se~ls~~L~~~g--i~h~vLNak~~~~Ea~iia~AG~-~g~VTIATN 624 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGN----PILIGTESVEVSEKLSRILRQNR--IEHTVLNAKNHAQEAEIIAGAGK-LGAVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHhCCC----CEEEEeCcHHHHHHHHHHHHHcC--CcceecccchhhhHHHHHHhcCC-CCcEEEeec
Confidence 346778888888888764 49999999998889998887654 44444555423333333323221 248999999
Q ss_pred CCccccCCCC---e-----EEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 162 IAESSVTIPK---V-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 162 IAEtsiTIp~---V-----~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
+|.++-.|.= | -+||=+. .+-|+---.|=+|||||.+ ||.+-.+.+-+
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~lSlE 681 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFLSFE 681 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 9999966541 1 1444322 2235556679999999999 59876555543
No 129
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.67 E-value=0.0029 Score=78.79 Aligned_cols=105 Identities=20% Similarity=0.143 Sum_probs=79.6
Q ss_pred ceEEEcCcHHHHHHHHH----HhcCCC--CCcEEEEecCCccHHHHHHHhhc-cCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 104 SILVFLPTYYALEQQWH----LMKPLS--SFFKVHILHSSVDTEQALMAMKI-CKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~----~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
..|||.-+...++.+.. .+...+ ....+...++++..+++..+... ..|.-++++|||.+|.+|.|-++.-||
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi 387 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI 387 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh
Confidence 48999999998887752 221111 12457788999999998877654 478889999999999999999999999
Q ss_pred eCCCcceeeecCCCCcccceeeec-CHhhHHhhcCCCCCCC-CCcEEEeecc
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWV-SQSQAEQRRGRTGRTC-DGQVYRLVTK 226 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~I-Skasa~QR~GRaGR~~-~G~c~rLyt~ 226 (846)
-.|+ |. |..+..||+|||||.. .+..+-.+..
T Consensus 388 ~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 388 AYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred hcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 7774 22 7789999999999987 3444444443
No 130
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.46 E-value=0.02 Score=73.42 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=74.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC-------CCCcEEEEecCCccHHHHHHHhhcc-CC-CeEEEEecCCCccccCCCCe
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL-------SSFFKVHILHSSVDTEQALMAMKIC-KS-HRKVILATNIAESSVTIPKV 172 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~-------~~~~~v~~Lhs~l~~~~~~~~~~~~-~~-~rKVIlATnIAEtsiTIp~V 172 (846)
+|..|||..+.++.+.+.+.|... .....+..+||+.+..+ .+++.| .+ ..+|+|+++++-||+.+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~--~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPD--QLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchH--HHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 478999999999988877766431 11224566888875432 233333 22 24899999999999999999
Q ss_pred EEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC--Cc-EEEeecc
Q 003111 173 AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLVTK 226 (846)
Q Consensus 173 ~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~--G~-c~rLyt~ 226 (846)
..||= +++. + |+....||.||+.|.++ |+ .|.++.-
T Consensus 776 ~~vVf--------~rpv-k---------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 776 CNLVF--------LRRV-R---------SRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred cEEEE--------ecCC-C---------CHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 99992 2222 1 77888999999999998 55 5666554
No 131
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.40 E-value=0.0022 Score=68.78 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=49.5
Q ss_pred Ccccccccccccc-CcCCCCCCCCccccCC------------CCCcccccccccCCCCCCCCCCCCCCCC
Q 003111 559 TPGEAPLCVYFIN-GSCNRGTGCPFSHSLQ------------AKRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 559 ~~~k~~~C~~f~~-G~C~~G~~C~FsH~~~------------~~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
...++++|.-|.. |.|.+|.+|.|.|+.. ....+|+-+..+|.|.+|.+|.++|+..
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkk 339 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKK 339 (351)
T ss_pred cccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccc
Confidence 3568999999985 9999999999999874 3355899999999999999999999853
No 132
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.0024 Score=71.78 Aligned_cols=56 Identities=23% Similarity=0.489 Sum_probs=41.4
Q ss_pred ccccccccccCcCCCCCCCCccccCC---CCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 003111 562 EAPLCVYFINGSCNRGTGCPFSHSLQ---AKRPACKFFYSLQGCRNGDSCIFSHDLGQPVL 619 (846)
Q Consensus 562 k~~~C~~f~~G~C~~G~~C~FsH~~~---~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~ 619 (846)
--..|++|+.|.|-+- .|+|.|..- .....|.|+.+..+|.+- +|-|.|..|+...
T Consensus 31 n~t~C~~w~~~~~C~k-~C~YRHSe~~~kr~e~~CYwe~~p~gC~k~-~CgfRH~~pPLkg 89 (667)
T KOG4791|consen 31 NETVCTLWQEGRCCRK-VCRYRHSEIDKKRSEIPCYWENQPTGCQKL-NCGFRHNRPPLKG 89 (667)
T ss_pred CcchhhhhhhcCcccc-cccchhhHHhhhcCcccceeecCCCccCCC-ccccccCCCchhh
Confidence 4567999998775442 799999874 234489999994459987 9999997655543
No 133
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.16 E-value=0.012 Score=66.14 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
.+++|..+--. +...+||+++...++-+...|...+ +..--+||+|+.+-+..-...| .++-.+.+.|++|.+++.
T Consensus 250 aLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g--~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 250 ALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFG--GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred HHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcC--CCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 34445443221 2368999999999999998887655 5566789999998877444444 556689999999999999
Q ss_pred CCCeEEEEeCC
Q 003111 169 IPKVAYVIDSC 179 (846)
Q Consensus 169 Ip~V~yVIDsG 179 (846)
||...-||+--
T Consensus 327 iplldnvinyd 337 (529)
T KOG0337|consen 327 IPLLDNVINYD 337 (529)
T ss_pred Ccccccccccc
Confidence 99999999743
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.15 E-value=0.027 Score=69.29 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCc--cHHHHHHHhhccCCCeEEEEec
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV--DTEQALMAMKICKSHRKVILAT 160 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l--~~~~~~~~~~~~~~~rKVIlAT 160 (846)
-+..|++.+...|.+.. .|||-..+.+.-+.+...|...+ +..-.|++.- ...+...+-.+. ..-.|.|||
T Consensus 409 K~~AI~~ei~~~~~~gr----PVLIgT~SIe~SE~ls~~L~~~g--i~h~vLNAk~~~~~~EA~IIA~AG-~~G~VTIAT 481 (870)
T CHL00122 409 KWRAIADECLQMHQTGR----PILIGTTTIEKSELLSQLLKEYR--LPHQLLNAKPENVRRESEIVAQAG-RKGSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHhcCC----CEEEeeCCHHHHHHHHHHHHHcC--CccceeeCCCccchhHHHHHHhcC-CCCcEEEec
Confidence 35677788888887654 49999999999999999987765 4455666652 234444443332 123899999
Q ss_pred CCCccccCC
Q 003111 161 NIAESSVTI 169 (846)
Q Consensus 161 nIAEtsiTI 169 (846)
|+|.+|..|
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999655
No 135
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.15 E-value=0.0023 Score=70.93 Aligned_cols=41 Identities=34% Similarity=0.674 Sum_probs=32.6
Q ss_pred CCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 003111 576 RGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQP 617 (846)
Q Consensus 576 ~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 617 (846)
.+..-.|.|.......+|+||+. |.|++|++|||+|...-+
T Consensus 126 arvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~ 166 (486)
T KOG2185|consen 126 ARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVP 166 (486)
T ss_pred cceEEEeecCcchhhccchHhhc-cccccCcccccccCcccc
Confidence 33445677777677789999999 999999999999986443
No 136
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.00 E-value=0.04 Score=64.12 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=77.9
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
..+|||....++...+...+...+. +..+.+..+.+++..+...+ .+..++++++.|+..|+.||++..+|=.
T Consensus 284 ~~~lif~~~~~~a~~i~~~~~~~~~---~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~--- 357 (442)
T COG1061 284 DKTLIFASDVEHAYEIAKLFLAPGI---VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIIL--- 357 (442)
T ss_pred CcEEEEeccHHHHHHHHHHhcCCCc---eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEe---
Confidence 4799999999999999988865442 67788888999988887665 4569999999999999999999998821
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 219 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~ 219 (846)
.+ ++ |+....||.||.=|..+|.
T Consensus 358 -----~~-t~---------S~~~~~Q~lGR~LR~~~~k 380 (442)
T COG1061 358 -----RP-TG---------SRRLFIQRLGRGLRPAEGK 380 (442)
T ss_pred -----CC-CC---------cHHHHHHHhhhhccCCCCC
Confidence 11 22 7888999999999965543
No 137
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=95.95 E-value=0.014 Score=65.97 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=74.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhc-cCCCeEEEEecCCCc----------------
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI-CKSHRKVILATNIAE---------------- 164 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAE---------------- 164 (846)
.|.+|||+++.+-.-++.--|+..+ ++-..|-|.||..-+..++.. .+|.-.||+||+.-+
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFG--iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~ 345 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFG--IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEK 345 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhC--cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccccc
Confidence 4789999999766555555555555 667788999999887777654 488899999999221
Q ss_pred -------------------cccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEee
Q 003111 165 -------------------SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLV 224 (846)
Q Consensus 165 -------------------tsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLy 224 (846)
++|.+..|..||+.- .|-+-.+..+|+||++|... |....+.
T Consensus 346 ~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD------------------~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 346 NPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD------------------FPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred CCCCccccccccCchhchhccccchheeeeeecC------------------CCCchHHHHHhccccccCCCCCceEEEe
Confidence 234444555555432 24466788999999999874 8887765
Q ss_pred cc
Q 003111 225 TK 226 (846)
Q Consensus 225 t~ 226 (846)
..
T Consensus 408 ~P 409 (569)
T KOG0346|consen 408 SP 409 (569)
T ss_pred cc
Confidence 54
No 138
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.82 E-value=0.0048 Score=39.79 Aligned_cols=17 Identities=53% Similarity=1.263 Sum_probs=8.6
Q ss_pred ccccccCcCCCCCCCCccc
Q 003111 566 CVYFINGSCNRGTGCPFSH 584 (846)
Q Consensus 566 C~~f~~G~C~~G~~C~FsH 584 (846)
||||.. |++|++|.|+|
T Consensus 2 Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 2 CKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CcCcCC--CCCCCcCccCC
Confidence 554443 55555555555
No 139
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.79 E-value=0.0041 Score=70.60 Aligned_cols=50 Identities=38% Similarity=0.811 Sum_probs=43.3
Q ss_pred ccccccccccC---cCCCCCCCCccccCC----CC----CcccccccccCCCCCCCCCCCC
Q 003111 562 EAPLCVYFING---SCNRGTGCPFSHSLQ----AK----RPACKFFYSLQGCRNGDSCIFS 611 (846)
Q Consensus 562 k~~~C~~f~~G---~C~~G~~C~FsH~~~----~~----~~~C~~f~~~g~C~~G~~C~f~ 611 (846)
...+|.-..+| .|..|++|+|-||.. .+ .+.|.+|.+.|.|.+|-+|||.
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl 135 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFL 135 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehh
Confidence 57789998876 599999999999986 22 3479999999999999999996
No 140
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=95.76 E-value=0.064 Score=65.68 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC-------------------------CCC------------C
Q 003111 86 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------------------------LSS------------F 128 (846)
Q Consensus 86 li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~-------------------------~~~------------~ 128 (846)
-+.+++.|++++.-- .++||+=+..-+++.+..|.. ... .
T Consensus 554 ~~l~lin~L~k~~lL---P~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~ 630 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLL---PVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLL 630 (1248)
T ss_pred hHHHHHHHHhhcccC---ceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHh
Confidence 466888888877632 378887766544444433321 000 0
Q ss_pred cEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHh
Q 003111 129 FKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 207 (846)
Q Consensus 129 ~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~Q 207 (846)
-.+-..||++=+=-.+.+.-.| .|-.||++||-...-+|..|.-.+|+|+=.. .|.+.. ..+.-.+..|
T Consensus 631 RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~K----hDG~ef------R~L~PGEytQ 700 (1248)
T KOG0947|consen 631 RGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRK----HDGNEF------RELLPGEYTQ 700 (1248)
T ss_pred hcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhh----ccCcce------eecCChhHHh
Confidence 1134458888554444333333 6889999999999999999999999986321 333332 3355678889
Q ss_pred hcCCCCCCCC---CcEEEeeccc
Q 003111 208 RRGRTGRTCD---GQVYRLVTKS 227 (846)
Q Consensus 208 R~GRaGR~~~---G~c~rLyt~~ 227 (846)
++|||||-+= |.++-+.+..
T Consensus 701 MAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 701 MAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhccccccccCcCceEEEEecCC
Confidence 9999999873 8888776553
No 141
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.58 E-value=0.037 Score=69.54 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhhcc-CCCeEEEE
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMKIC-KSHRKVIL 158 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIl 158 (846)
+..+.+++.|..+.... +|.+|||+|+++.++.+...|.... ..+.++. .+.. ..+..+.+.+ .+...|++
T Consensus 657 ~~~~~ia~~i~~l~~~~---~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLl 730 (850)
T TIGR01407 657 EYAQEIASYIIEITAIT---SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILL 730 (850)
T ss_pred HHHHHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEE
Confidence 33456777777777654 3789999999999999998886421 2233322 2222 2233344443 46678999
Q ss_pred ecCCCccccCCCCeE--EEEeCCCcceeeecCCCCcc-------------ccee--eecCHhhHHhhcCCCCCCCC--Cc
Q 003111 159 ATNIAESSVTIPKVA--YVIDSCRSLQVFWDVNRKID-------------SAEL--VWVSQSQAEQRRGRTGRTCD--GQ 219 (846)
Q Consensus 159 ATnIAEtsiTIp~V~--yVIDsG~~k~~~yd~~~~~~-------------~l~~--~~ISkasa~QR~GRaGR~~~--G~ 219 (846)
+|+..-.||.+||.. .||=+| .++-+|..-.. .... .|-.--..+|-.||.=|... |.
T Consensus 731 gt~sf~EGVD~~g~~l~~viI~~---LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 731 GTSSFWEGVDFPGNGLVCLVIPR---LPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred EcceeecccccCCCceEEEEEeC---CCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 999999999999876 333233 23333322111 1111 11122346788899988775 77
Q ss_pred EEEe
Q 003111 220 VYRL 223 (846)
Q Consensus 220 c~rL 223 (846)
.+-|
T Consensus 808 v~il 811 (850)
T TIGR01407 808 IVIL 811 (850)
T ss_pred EEEE
Confidence 6655
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.57 E-value=0.091 Score=64.91 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCC-cc-HHHHHHHhhccCCCeEEEEe
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS-VD-TEQALMAMKICKSHRKVILA 159 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~-l~-~~~~~~~~~~~~~~rKVIlA 159 (846)
+-+..|++.|..+|.+.. .|||-..+.+.-+.+...|...+ +..-.|.+. .. ..+...+-.+. ..-.|.||
T Consensus 423 ~K~~Ai~~ei~~~~~~Gr----PVLIgT~SVe~SE~ls~~L~~~g--i~h~vLNAk~~~~~~EA~IIa~AG-~~GaVTIA 495 (939)
T PRK12902 423 AKWRAVANETAEMHKQGR----PVLVGTTSVEKSELLSALLQEQG--IPHNLLNAKPENVEREAEIVAQAG-RKGAVTIA 495 (939)
T ss_pred HHHHHHHHHHHHHHhCCC----CEEEeeCCHHHHHHHHHHHHHcC--CchheeeCCCcchHhHHHHHHhcC-CCCcEEEe
Confidence 346778888888887654 49999999999999999997765 333445554 12 33333333332 12489999
Q ss_pred cCCCccccCC
Q 003111 160 TNIAESSVTI 169 (846)
Q Consensus 160 TnIAEtsiTI 169 (846)
||+|.+|-.|
T Consensus 496 TNMAGRGTDI 505 (939)
T PRK12902 496 TNMAGRGTDI 505 (939)
T ss_pred ccCCCCCcCE
Confidence 9999998544
No 143
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.51 E-value=0.019 Score=66.48 Aligned_cols=96 Identities=19% Similarity=0.138 Sum_probs=70.5
Q ss_pred ceEEEcCcHHHHHHHHHH----hcCCCCCc--EEEEecCCccHHHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 104 SILVFLPTYYALEQQWHL----MKPLSSFF--KVHILHSSVDTEQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~----L~~~~~~~--~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
..+.|.|.+.-.+-+... +..-+..+ .|..+.|+-..++++++. ..+.|..+-|+|||.+|-+|.|.+..-|+
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 379999988654433222 11111111 233455777777777765 56889999999999999999999999999
Q ss_pred eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD 217 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~ 217 (846)
-+|+ |-|-|+..|-+|||||-..
T Consensus 607 ~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 607 HLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred EccC------------------chhHHHHHHHhccccccCC
Confidence 9997 3488999999999998653
No 144
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.27 E-value=0.012 Score=65.59 Aligned_cols=55 Identities=29% Similarity=0.728 Sum_probs=47.3
Q ss_pred cccccccc-CcCCCCCCCCccccC----------C--------CCCcccccccccCCCCC-CCCCCCCCCCCCCC
Q 003111 564 PLCVYFIN-GSCNRGTGCPFSHSL----------Q--------AKRPACKFFYSLQGCRN-GDSCIFSHDLGQPV 618 (846)
Q Consensus 564 ~~C~~f~~-G~C~~G~~C~FsH~~----------~--------~~~~~C~~f~~~g~C~~-G~~C~f~H~~~~~~ 618 (846)
.-|.++.. |.|..|+.|++.|.. . .+++.|++|.+.|.|+| |++|+|.|......
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 78999974 999999999999995 1 34568999999999999 99999999876555
No 145
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.25 E-value=0.013 Score=67.60 Aligned_cols=49 Identities=29% Similarity=0.642 Sum_probs=39.8
Q ss_pred ccccccccccCcCCCCCCCCccccCC-----------CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 562 EAPLCVYFINGSCNRGTGCPFSHSLQ-----------AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 562 k~~~C~~f~~G~C~~G~~C~FsH~~~-----------~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
|...|. ++.|.-|..|+|.|..+ ....+|.-|-+ |.|..||.|-|.|..
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGV 259 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccce
Confidence 666665 46899999999999543 12338999999 999999999999986
No 146
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=95.16 E-value=0.059 Score=59.72 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=60.8
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhc-cCCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI-CKSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.=+|+.=++.+.+++...|.+.+ +..-.+|+.|.++++.-+-.. -.|...|||||-.-.-+|.-|+|+|||.-.+.|
T Consensus 319 sgiiyc~sq~d~ekva~alkn~g--i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHG--IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcC--ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 34566667889999999998766 667788999988776444322 267899999999999999999999999776654
No 147
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.09 E-value=0.21 Score=60.84 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhCC--CcccceEEEcCcHHHHHHHHHHhcCCCCCc---EEEEecCCccHHHHHHHh--hccCCCeEE
Q 003111 84 HKLIHDLVLHIHKNES--DIEKSILVFLPTYYALEQQWHLMKPLSSFF---KVHILHSSVDTEQALMAM--KICKSHRKV 156 (846)
Q Consensus 84 ~~li~~li~~I~~~~~--~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~---~v~~Lhs~l~~~~~~~~~--~~~~~~rKV 156 (846)
-+.+...+.+.++..+ +.-|..|||.-+..+.+.++..+....++. -+..+-+.-...+ ..+. ...+.-.+|
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q-~~Id~f~~ke~~P~I 484 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ-ALIDNFIDKEKYPRI 484 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH-HHHHHHHhcCCCCce
Confidence 4677777777776632 224679999999999999998886543222 1344445533333 2222 223455799
Q ss_pred EEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC--C-----c-EEEeeccc-
Q 003111 157 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--G-----Q-VYRLVTKS- 227 (846)
Q Consensus 157 IlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~--G-----~-c~rLyt~~- 227 (846)
+++-++.-|||.+|.|.-+| ++-..+ ||.-..|+.||.=|.++ | + -|-++.-.
T Consensus 485 aitvdlL~TGiDvpev~nlV---------F~r~Vr---------SktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 485 AITVDLLTTGVDVPEVVNLV---------FDRKVR---------SKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred EEehhhhhcCCCchheeeee---------ehhhhh---------hHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 99999999999999998887 333222 89999999999999886 4 3 23333321
Q ss_pred --ccccccccccchhhhhhhHHHHHHH
Q 003111 228 --FFGTLEDHECPAILRLSLRLQVLLI 252 (846)
Q Consensus 228 --~~~~l~~~~~PEI~r~~L~~~vL~l 252 (846)
.|-+|.+...++-.+.+|+.-++.-
T Consensus 547 ~~~~~~~~~~~~e~~~~~~l~~rLF~~ 573 (875)
T COG4096 547 NTEYFEMDPEMREGRVRVSLEQRLFAD 573 (875)
T ss_pred hhhhhccCcccccccccchHHHHHhhh
Confidence 2335667777777777777655543
No 148
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=94.97 E-value=0.0092 Score=66.32 Aligned_cols=65 Identities=25% Similarity=0.520 Sum_probs=40.9
Q ss_pred cceecccCccccc-cccchhHHHHHHHHHHhhhhhccccccCCCCCCCCCCCCccccccccccccCcCCCCCCCCccccC
Q 003111 508 AKKCVAVPFVAPN-QFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSL 586 (846)
Q Consensus 508 ~R~~~~~~Y~~~n-~f~~~eaae~l~~iiKk~r~q~~~~~~~~~~~~~~~~~~~~k~~~C~~f~~G~C~~G~~C~FsH~~ 586 (846)
--+|.+|+|.+-. .+|+..+-..=.. +..|+.. -.+. .....+|+||+.|.|+.|.+|+|||+.
T Consensus 99 GsKcsaph~ss~gl~yHna~I~g~E~s--arvRVlf-------l~PT------h~sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 99 GSKCSAPHTSSRGLYYHNARIIGFEGS--ARVRVLF-------LTPT------HESMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred CCcccccccCCccceecceeEEeeccc--cceEEEe-------ecCc------chhhccchHhhccccccCcccccccCc
Confidence 3578888888766 4444322111111 2333333 1122 236788999999999999999999998
Q ss_pred C
Q 003111 587 Q 587 (846)
Q Consensus 587 ~ 587 (846)
.
T Consensus 164 ~ 164 (486)
T KOG2185|consen 164 D 164 (486)
T ss_pred c
Confidence 5
No 149
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.95 E-value=0.015 Score=37.50 Aligned_cols=19 Identities=58% Similarity=1.144 Sum_probs=16.4
Q ss_pred ccccccccCCCCCCCCCCCCCC
Q 003111 592 ACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 592 ~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
.|+||.. |++|++|.|+|.
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4998865 999999999993
No 150
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.88 E-value=0.15 Score=64.73 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=75.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccC----CCeEEEEecCCCccccCCCCeEEEEeC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK----SHRKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~----~~rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
..||||---...++.+...|... .+.+..+||+++.+++..++..|. +..-++|||..+..||++....+||-
T Consensus 488 ~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi- 564 (1033)
T PLN03142 488 SRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL- 564 (1033)
T ss_pred CeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE-
Confidence 47999976555555555555443 377889999999998877776652 23457899999999999999999983
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCC---CCCCcEEEeecccccc
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR---TCDGQVYRLVTKSFFG 230 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR---~~~G~c~rLyt~~~~~ 230 (846)
||+.=+ -+.-.|+.||+.| ..+=.+|||+++...+
T Consensus 565 -------yD~dWN----------P~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 565 -------YDSDWN----------PQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred -------eCCCCC----------hHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 444321 2233455555544 4455789999997654
No 151
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=94.86 E-value=0.02 Score=62.22 Aligned_cols=53 Identities=36% Similarity=0.723 Sum_probs=46.4
Q ss_pred ccccccc-ccCcCCCCCCCCccccCC-CCCcccccccc--cCCCCCCCCCCCCCCCC
Q 003111 563 APLCVYF-INGSCNRGTGCPFSHSLQ-AKRPACKFFYS--LQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 563 ~~~C~~f-~~G~C~~G~~C~FsH~~~-~~~~~C~~f~~--~g~C~~G~~C~f~H~~~ 615 (846)
...|++| ..|.|..|..|.+.|... ...+.|.+|.. .+.|.+|..|++.|...
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~ 190 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLK 190 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCccccccccc
Confidence 6789999 689999999999999964 45668999993 49999999999999865
No 152
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=94.54 E-value=0.061 Score=64.38 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=64.3
Q ss_pred EEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhc
Q 003111 131 VHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 209 (846)
Q Consensus 131 v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~ 209 (846)
|-..||+|=+--.+.+.-.| +|-.||++||-.-.-++..|.-++|. +....||.. ...|||-.+..|++
T Consensus 449 IGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~------~fRwissGEYIQMS 518 (1041)
T KOG0948|consen 449 IGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDGK------KFRWISSGEYIQMS 518 (1041)
T ss_pred cccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCCc------ceeeecccceEEec
Confidence 33458888554443332223 78899999999999999999765554 223335543 45899999999999
Q ss_pred CCCCCCCC---CcEEEeecccc
Q 003111 210 GRTGRTCD---GQVYRLVTKSF 228 (846)
Q Consensus 210 GRaGR~~~---G~c~rLyt~~~ 228 (846)
|||||-+- |+|+-+..+..
T Consensus 519 GRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 519 GRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred ccccccCCCCCceEEEEecCcC
Confidence 99999873 99999988753
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.11 E-value=0.32 Score=59.91 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hcc-CCCeEEEEe
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KIC-KSHRKVILA 159 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~-~~~rKVIlA 159 (846)
+..+.+.+.|..+.. . +|.+|||+|++..++.+...|..... .. +..++..+.+....-+ +.+ .+...|+++
T Consensus 518 ~~~~~~~~~i~~l~~-~---~gg~LVlFtSy~~l~~v~~~l~~~~~-~~-ll~Q~~~~~~~ll~~f~~~~~~~~~~VL~g 591 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K---HKGSLVLFASRRQMQKVADLLPRDLR-LM-LLVQGDQPRQRLLEKHKKRVDEGEGSVLFG 591 (697)
T ss_pred HHHHHHHHHHHHHHh-c---CCCEEEEeCcHHHHHHHHHHHHHhcC-Cc-EEEeCCchHHHHHHHHHHHhccCCCeEEEE
Confidence 445667788888876 3 24589999999999999888754321 22 2235543333222112 221 345689999
Q ss_pred cCCCccccCCCC--eEEEEeCC
Q 003111 160 TNIAESSVTIPK--VAYVIDSC 179 (846)
Q Consensus 160 TnIAEtsiTIp~--V~yVIDsG 179 (846)
|.-.-.||.+|| .+.||=.|
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~k 613 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITK 613 (697)
T ss_pred eccccccccCCCCceEEEEEEc
Confidence 988888999987 56666333
No 154
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.3 Score=57.00 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=85.0
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.+||-.=+..-.+.+.+.|...+ +++-.|||.+..-++..++ ....|.-.|+|--|.+=-|+.||.|..|-
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~g--ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA------ 519 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELG--IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA------ 519 (663)
T ss_pred eEEEEeehHHHHHHHHHHHHhcC--ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE------
Confidence 59999999988899988887766 8999999999888877665 45688899999999999999999999886
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEe
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRL 223 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rL 223 (846)
..|...-. -|+ |..|..|-.|||.|.-.|+++-.
T Consensus 520 --IlDADKeG-FLR----se~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 520 --ILDADKEG-FLR----SERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred --EeecCccc-ccc----ccchHHHHHHHHhhccCCeEEEE
Confidence 12333211 122 77889999999999999998753
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.31 E-value=0.37 Score=58.79 Aligned_cols=138 Identities=19% Similarity=0.133 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEec
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAT 160 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlAT 160 (846)
+..+.-+...+..+.+..+ |++|||+|+++.++.+.+.+...... ..+..++.-+.++...-++..... -++|+|
T Consensus 461 ~~~~~~~~~~i~~~~~~~~---~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~~~~~l~~f~~~~~~-~~lv~~ 535 (654)
T COG1199 461 PELLAKLAAYLREILKASP---GGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDEREELLEKFKASGEG-LILVGG 535 (654)
T ss_pred hHHHHHHHHHHHHHHhhcC---CCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCcHHHHHHHHHHhcCC-eEEEee
Confidence 3456667778888887764 68999999999999999988764432 344556665555433323222222 799999
Q ss_pred CCCccccCCCCe---EEEEeC-CCc--------ceeeecCCCCcccc--eeeecCHhhHHhhcCCCCCCCC--CcEEEe
Q 003111 161 NIAESSVTIPKV---AYVIDS-CRS--------LQVFWDVNRKIDSA--ELVWVSQSQAEQRRGRTGRTCD--GQVYRL 223 (846)
Q Consensus 161 nIAEtsiTIp~V---~yVIDs-G~~--------k~~~yd~~~~~~~l--~~~~ISkasa~QR~GRaGR~~~--G~c~rL 223 (846)
.-.--||.+||= .+||+. .+. .+..|..+.|.... ...+..--...|=.||+=|... |.++-|
T Consensus 536 gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 536 GSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred ccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 988889999974 344431 111 11112222221111 1223333457788899988665 777766
No 156
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.58 E-value=0.98 Score=57.59 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC--CcEEEEecCCccHHHHHHHhhcc-CCCeEEEE
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKIC-KSHRKVIL 158 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~--~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIl 158 (846)
...+.+.+.|..+.... +|.+|||.|+++.++.+...|..... .+.++. .+ +....+..+.+.+ .+...|++
T Consensus 735 ~~~~~la~~i~~l~~~~---~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Qg-~~~~~r~~l~~~F~~~~~~iLl 809 (928)
T PRK08074 735 EYIEEVAAYIAKIAKAT---KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-QG-VSSGSRARLTKQFQQFDKAILL 809 (928)
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-cC-CCCCCHHHHHHHHHhcCCeEEE
Confidence 33466777777777654 47899999999999999988865322 122222 22 2111122222322 35568999
Q ss_pred ecCCCccccCCCCe--EEEEeCCCcceeeecCCC-------------Ccccce--eeecCHhhHHhhcCCCCCCCC--Cc
Q 003111 159 ATNIAESSVTIPKV--AYVIDSCRSLQVFWDVNR-------------KIDSAE--LVWVSQSQAEQRRGRTGRTCD--GQ 219 (846)
Q Consensus 159 ATnIAEtsiTIp~V--~yVIDsG~~k~~~yd~~~-------------~~~~l~--~~~ISkasa~QR~GRaGR~~~--G~ 219 (846)
+|...--||.+||= ..||=.++ ++-.|.. |..... ..|-.--..+|=.||.=|... |.
T Consensus 810 G~~sFwEGVD~pg~~l~~viI~kL---PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 810 GTSSFWEGIDIPGDELSCLVIVRL---PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred ecCcccCccccCCCceEEEEEecC---CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 99888889999973 55552332 2212221 111110 112223346788889877764 77
Q ss_pred EEEe
Q 003111 220 VYRL 223 (846)
Q Consensus 220 c~rL 223 (846)
.+-|
T Consensus 887 v~il 890 (928)
T PRK08074 887 VFVL 890 (928)
T ss_pred EEEe
Confidence 6644
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.48 E-value=1.2 Score=56.18 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=81.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEE---EEecCCCccccCCCCeEEEEeCC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKV---ILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKV---IlATnIAEtsiTIp~V~yVIDsG 179 (846)
..+|||--=..-++-+ +.....+ .+..+-|-|+...++++..++.|...+|| ||+|--...+|++-|.+.||
T Consensus 1277 hRvLIfTQMtkmLDVL-eqFLnyH-gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv--- 1351 (1958)
T KOG0391|consen 1277 HRVLIFTQMTKMLDVL-EQFLNYH-GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV--- 1351 (1958)
T ss_pred ceEEehhHHHHHHHHH-HHHHhhc-ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE---
Confidence 4699985433322222 2322322 26778888998899988888888655665 89999999999999999998
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
+||.+-+ +.=-|+|.-|.-|.|+++.=..|||+++...
T Consensus 1352 -----FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1352 -----FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred -----EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 4665533 2235788999999999999999999998654
No 158
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.075 Score=59.45 Aligned_cols=25 Identities=36% Similarity=0.871 Sum_probs=18.7
Q ss_pred cccccccccCCCCCCCCCCCCCCCCC
Q 003111 591 PACKFFYSLQGCRNGDSCIFSHDLGQ 616 (846)
Q Consensus 591 ~~C~~f~~~g~C~~G~~C~f~H~~~~ 616 (846)
.+|+||++ |.|++|+.|+|+|+.+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 57777777 77777777777777654
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=90.91 E-value=0.62 Score=57.46 Aligned_cols=114 Identities=24% Similarity=0.242 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+.+..|++-|...|.+. +.|||--...+.-+.+.+.|...+ +....|-+.=...+.+.+-.+. ..--|=+|||
T Consensus 413 ~K~~Aiv~~I~~~~~~g----qPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNAk~h~~EA~Iia~AG-~~gaVTiATN 485 (822)
T COG0653 413 EKFKAIVEDIKERHEKG----QPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNAKNHAREAEIIAQAG-QPGAVTIATN 485 (822)
T ss_pred HHHHHHHHHHHHHHhcC----CCEEEcCcceecchhHHHHHHhcC--CCceeeccccHHHHHHHHhhcC-CCCccccccc
Confidence 34677777777777764 359999999888888888887544 2223333332233433332222 1236889999
Q ss_pred CCccccCCC---Ce--------EEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcE
Q 003111 162 IAESSVTIP---KV--------AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQV 220 (846)
Q Consensus 162 IAEtsiTIp---~V--------~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c 220 (846)
+|.++-.|. +. -|||-+.+.. |+-=-.|-+||+||.+ ||..
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE------------------SRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHE------------------SRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccch------------------hhHHHHHhhcccccCCCcchh
Confidence 999886553 21 1444332211 3333468999999998 4753
No 160
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=89.73 E-value=0.85 Score=50.21 Aligned_cols=56 Identities=27% Similarity=0.615 Sum_probs=42.1
Q ss_pred CccccccccccccCcCCCCCCCCccccCC------------------------------CCCcccc--cccccCCCCCC-
Q 003111 559 TPGEAPLCVYFINGSCNRGTGCPFSHSLQ------------------------------AKRPACK--FFYSLQGCRNG- 605 (846)
Q Consensus 559 ~~~k~~~C~~f~~G~C~~G~~C~FsH~~~------------------------------~~~~~C~--~f~~~g~C~~G- 605 (846)
...+...|..|++|+|.+ ++|+|.|... ...++|+ .|.. +.|.-|
T Consensus 67 ~~g~v~aC~Ds~kgrCsR-~nCkylHpp~hlkdql~ingrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~~-~~~~~g~ 144 (331)
T KOG2494|consen 67 SNGRVIACFDSQKGRCSR-ENCKYLHPPQHLKDQLKINGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFAT-GPCLGGN 144 (331)
T ss_pred cCCeEEEEeccccCccCc-ccceecCCChhhhhhhhhcccccHHHHHHHHhhhcccccCCCccccccccccc-cccccCC
Confidence 344667799999999999 5599999875 1245777 6666 777775
Q ss_pred CCCCCCCCCCC
Q 003111 606 DSCIFSHDLGQ 616 (846)
Q Consensus 606 ~~C~f~H~~~~ 616 (846)
..|+|.|-.+.
T Consensus 145 ~~~s~~~y~~~ 155 (331)
T KOG2494|consen 145 TACSYWPYLPP 155 (331)
T ss_pred CccccccccCC
Confidence 57899887663
No 161
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=89.27 E-value=0.13 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=13.9
Q ss_pred ccccccccc-cCcCCCCCCCCccccC
Q 003111 562 EAPLCVYFI-NGSCNRGTGCPFSHSL 586 (846)
Q Consensus 562 k~~~C~~f~-~G~C~~G~~C~FsH~~ 586 (846)
...+|+.|. +|.|-+||.|+|+|+.
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhh
Confidence 344566554 3556666666666554
No 162
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.99 E-value=0.16 Score=51.77 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=27.9
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 003111 590 RPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSS 622 (846)
Q Consensus 590 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~ 622 (846)
..+|+-|-.+|.|-|||.|+|.|++..-...+.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWk 173 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWK 173 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhhcccc
Confidence 347999999999999999999999876666554
No 163
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=87.78 E-value=3.8 Score=50.04 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=75.0
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhcc--CC--CeEEEEecCCCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKIC--KS--HRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~--~~--~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
..||||--= .++...|..- ..++...-|-|+++.+++...++.+ ++ +--.+|+|-.+.-||.+-....||
T Consensus 488 hRVLIFSQm----t~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 488 HRVLIFSQM----TRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred CeEEEeHHH----HHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 469999432 2222222211 1247889999999999988887765 23 234468999888999888877777
Q ss_pred --eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 177 --DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 177 --DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
|+- |||.. =-+|.+|+-|.|...+=++|||.|+..-
T Consensus 564 lyDSD------WNPQ~-----------DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 564 LYDSD------WNPQV-----------DLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred EecCC------CCchh-----------hhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 432 44443 3469999999999999999999998654
No 164
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=87.57 E-value=1.9 Score=50.19 Aligned_cols=110 Identities=16% Similarity=0.327 Sum_probs=76.9
Q ss_pred cChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccC--CCeEE
Q 003111 79 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK--SHRKV 156 (846)
Q Consensus 79 i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~--~~rKV 156 (846)
++|..+... +.+.+.|... +..|+||--....+...+..|.. --+||..++.++.++++.|+ ....-
T Consensus 524 MNP~KFraC-qfLI~~HE~R---gDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 524 MNPNKFRAC-QFLIKFHERR---GDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred cCcchhHHH-HHHHHHHHhc---CCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHHHHHHhcccCCccce
Confidence 345555544 4444566553 34699999999988888777743 23688889999988887763 33444
Q ss_pred EEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC
Q 003111 157 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 216 (846)
Q Consensus 157 IlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~ 216 (846)
|+-.-++.||+.+|...+.|.. .+.-| |+-+-.||.||.=|..
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQI--------SSH~G---------SRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQI--------SSHGG---------SRRQEAQRLGRILRAK 635 (776)
T ss_pred EEEeeccCccccCCcccEEEEE--------ccccc---------chHHHHHHHHHHHHHh
Confidence 6666799999999999999842 11222 6777889999876654
No 165
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=87.36 E-value=1.1 Score=56.65 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHhC----CCcccce---EEEcCcHHHHHHHHHHhc----CCCCCcEEEEecCCccHHHHHH-----
Q 003111 82 EVHKLIHDLVLHIHKNE----SDIEKSI---LVFLPTYYALEQQWHLMK----PLSSFFKVHILHSSVDTEQALM----- 145 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~----~~~~G~I---LVFLPg~~eI~~~~~~L~----~~~~~~~v~~Lhs~l~~~~~~~----- 145 (846)
.+.+.|.+.+..+|... +..+..| ||=+.+......++..|. .....+.+..+||.-+...+..
T Consensus 729 ~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~L 808 (1110)
T TIGR02562 729 ALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRL 808 (1110)
T ss_pred HHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHH
Confidence 45677777778887653 2111222 777887777666655553 2334567888899875432211
Q ss_pred --Hhhc-------------------c-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHh
Q 003111 146 --AMKI-------------------C-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 203 (846)
Q Consensus 146 --~~~~-------------------~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISka 203 (846)
+.+. + .+...|||||.|.|.|+.|+ ...+| ..+.+-.
T Consensus 809 d~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~ 867 (1110)
T TIGR02562 809 DQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMR 867 (1110)
T ss_pred HHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHH
Confidence 1110 1 24569999999999999885 33333 2334667
Q ss_pred hHHhhcCCCCCCCCC
Q 003111 204 QAEQRRGRTGRTCDG 218 (846)
Q Consensus 204 sa~QR~GRaGR~~~G 218 (846)
+..||+||+.|.+.+
T Consensus 868 sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 868 SIIQLAGRVNRHRLE 882 (1110)
T ss_pred HHHHHhhcccccccC
Confidence 899999999998753
No 166
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=86.83 E-value=1.4 Score=55.86 Aligned_cols=129 Identities=24% Similarity=0.313 Sum_probs=91.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CC-CeEEEEecCCCccccCCCCeEEEE-
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KS-HRKVILATNIAESSVTIPKVAYVI- 176 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~-~rKVIlATnIAEtsiTIp~V~yVI- 176 (846)
+.-||||--=..-++-+.+.|..++ +..--|-|++..+.++.++..| .. .--.+|||=...-||.+-....||
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~r~--ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSLRG--YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHHcC--CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 4579999665555555666665444 7778899999999888776654 22 235688999999999888777776
Q ss_pred -eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccccc-ccccccchhhhhhhHHHHHHH
Q 003111 177 -DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGT-LEDHECPAILRLSLRLQVLLI 252 (846)
Q Consensus 177 -DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~~-l~~~~~PEI~r~~L~~~vL~l 252 (846)
||- |||.+.. +|+-|+-|.|-...=.+|||.|+..|+. |-+.. =+.+-|+..||+.
T Consensus 777 FDSD------WNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 777 FDSD------WNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQR 834 (1373)
T ss_pred eCCC------CCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHh
Confidence 553 6776653 4777899999888888999999988853 21111 1235577788876
No 167
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=0.29 Score=54.94 Aligned_cols=24 Identities=42% Similarity=0.973 Sum_probs=23.1
Q ss_pred ccccccccCcCCCCCCCCccccCC
Q 003111 564 PLCVYFINGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 564 ~~C~~f~~G~C~~G~~C~FsH~~~ 587 (846)
.+|+||..|.|+.|+.|+|+|+..
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 789999999999999999999986
No 168
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=85.34 E-value=1.7 Score=43.72 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=46.7
Q ss_pred HHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC--CcEEEEecCCccHHHHHHHhhccCCCeEEEEecC--CCccccC
Q 003111 93 HIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHRKVILATN--IAESSVT 168 (846)
Q Consensus 93 ~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~--~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn--IAEtsiT 168 (846)
.+.+.. +|++|||+|+++.++.+...+..... ++.++.= ++ .+....+.....+..-|++++. -..-+|.
T Consensus 3 ~l~~~~---~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~~--~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD 76 (167)
T PF13307_consen 3 ELISAV---PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-GS--KSRDELLEEFKRGEGAILLAVAGGSFSEGID 76 (167)
T ss_dssp HHHHCC---SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-TC--CHHHHHHHHHCCSSSEEEEEETTSCCGSSS-
T ss_pred HHHhcC---CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-Cc--chHHHHHHHHHhccCeEEEEEecccEEEeec
Confidence 344444 47899999999999999988876532 2322222 22 2222222223345678999996 5555888
Q ss_pred CCC--eEEEEeCCC
Q 003111 169 IPK--VAYVIDSCR 180 (846)
Q Consensus 169 Ip~--V~yVIDsG~ 180 (846)
++| .+.||=.|+
T Consensus 77 ~~~~~~r~vii~gl 90 (167)
T PF13307_consen 77 FPGDLLRAVIIVGL 90 (167)
T ss_dssp -ECESEEEEEEES-
T ss_pred CCCchhheeeecCC
Confidence 886 666664443
No 169
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=85.14 E-value=1.2 Score=55.44 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=51.7
Q ss_pred EEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcC
Q 003111 132 HILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 210 (846)
Q Consensus 132 ~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~G 210 (846)
-.-|++|+..++..+.-.+ .|.-.|++||....-+|.+|=-++|. +.++|++.+ -...|++|
T Consensus 966 G~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF--------------~gDsLQL~p---lny~QmaG 1028 (1330)
T KOG0949|consen 966 GVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVF--------------AGDSLQLDP---LNYKQMAG 1028 (1330)
T ss_pred cccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEE--------------eccccccCc---hhHHhhhc
Confidence 3458999888877665433 68899999999999999998433332 112333322 35789999
Q ss_pred CCCCCC---CCcEEEe
Q 003111 211 RTGRTC---DGQVYRL 223 (846)
Q Consensus 211 RaGR~~---~G~c~rL 223 (846)
||||-+ .|.+..+
T Consensus 1029 RAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 1029 RAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred cccccccccccceEEE
Confidence 999976 2665444
No 170
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=84.98 E-value=0.27 Score=53.01 Aligned_cols=30 Identities=43% Similarity=0.876 Sum_probs=25.7
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 003111 587 QAKRPACKFFYSLQGCRNGDSCIFSHDLGQP 617 (846)
Q Consensus 587 ~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 617 (846)
.++.-+|-||.. |.|..|+.|.|+|+....
T Consensus 89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~ 118 (343)
T KOG1763|consen 89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVE 118 (343)
T ss_pred CchHHHHHHHhc-cCCCCCCcccccchHHHh
Confidence 356779999999 999999999999996543
No 171
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=84.42 E-value=5.1 Score=49.08 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CCCeEEEEecC
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KSHRKVILATN 161 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~~rKVIlATn 161 (846)
..+..++-.+..+ +..||+|--=..-++-+-..|... ++..+-|-|+.+.+.++.++.-| +..--.+|||-
T Consensus 764 r~L~~LLp~~k~~----G~RVLiFSQFTqmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 764 RKLKELLPKIKKK----GDRVLIFSQFTQMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hHHHHHHHHHhhc----CCEEEEeeHHHHHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeec
Confidence 3344444444333 245999854322222222223222 37889999998888877776655 33345689999
Q ss_pred CCccccCCCCeEEEE--eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 162 IAESSVTIPKVAYVI--DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 162 IAEtsiTIp~V~yVI--DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
...-||.+-....|| |+- |||... -+|+-|+-|.|.+.|=..|||+|+..-
T Consensus 838 AGG~GINLt~An~VIihD~d------FNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDID------FNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cCcceecccccceEEEeecC------CCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999999888777777 543 466554 368899999999999999999999644
No 172
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=84.40 E-value=0.88 Score=57.57 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=61.8
Q ss_pred EecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCC
Q 003111 133 ILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 211 (846)
Q Consensus 133 ~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GR 211 (846)
.-|++|=+..+..+...+ .|-+||++||-...-|+.+|--++|. ++++| +| .-...|+|..+..|.+||
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~d------G~~~r~L~~gEy~QmsGR 518 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---FD------GNGHRWLSPGEYTQMSGR 518 (1041)
T ss_pred hhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---ec------CCceeecChhHHHHhhhh
Confidence 347888776666665554 78899999999999999999755555 44433 44 224589999999999999
Q ss_pred CCCCCC---CcEEEe
Q 003111 212 TGRTCD---GQVYRL 223 (846)
Q Consensus 212 aGR~~~---G~c~rL 223 (846)
|||-+= |...-.
T Consensus 519 AGRRGlD~~G~vI~~ 533 (1041)
T COG4581 519 AGRRGLDVLGTVIVI 533 (1041)
T ss_pred hccccccccceEEEe
Confidence 999873 888877
No 173
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=83.87 E-value=0.58 Score=31.72 Aligned_cols=19 Identities=47% Similarity=1.155 Sum_probs=9.0
Q ss_pred cccccccC-cCCCCCCCCccc
Q 003111 565 LCVYFING-SCNRGTGCPFSH 584 (846)
Q Consensus 565 ~C~~f~~G-~C~~G~~C~FsH 584 (846)
+|.|-+.| .|+. +.|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 35555443 4544 3355554
No 174
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=0.89 Score=51.95 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=42.4
Q ss_pred cccccccccccCc-CCCCCCCCccccCC-----------------------------CC-CcccccccccCCCCCCCCCC
Q 003111 561 GEAPLCVYFINGS-CNRGTGCPFSHSLQ-----------------------------AK-RPACKFFYSLQGCRNGDSCI 609 (846)
Q Consensus 561 ~k~~~C~~f~~G~-C~~G~~C~FsH~~~-----------------------------~~-~~~C~~f~~~g~C~~G~~C~ 609 (846)
+...+|.|+.+|. |.+ .+|-|.|... .+ .-+|-+|++ +.|..||-|-
T Consensus 59 r~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K-~~e~~~D~~s 136 (667)
T KOG4791|consen 59 RSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRSVK-KVESSEDVPS 136 (667)
T ss_pred cCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHHhh-hhhhhccccc
Confidence 3567899999977 999 8899999542 00 117999999 9999999999
Q ss_pred CCCCC
Q 003111 610 FSHDL 614 (846)
Q Consensus 610 f~H~~ 614 (846)
|.|..
T Consensus 137 ~Lh~P 141 (667)
T KOG4791|consen 137 PLHPP 141 (667)
T ss_pred cCCCC
Confidence 99974
No 175
>PRK14873 primosome assembly protein PriA; Provisional
Probab=77.58 E-value=6.1 Score=48.55 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=49.5
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecCCC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KICKSHRKVILATNIA 163 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIA 163 (846)
+.+||.+|......++...+....+.-.+..|||+++..++...+ +...|..+|||-|=-|
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 579999999999999999887655445688899999998876665 4567888999998644
No 176
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=76.67 E-value=1.5 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=18.5
Q ss_pred cccccccccCCCCCCCCCCCCCC
Q 003111 591 PACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 591 ~~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
+.|.|-+++|.|... +|.|.|-
T Consensus 1 ~lC~yEl~Gg~Cnd~-~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCNDP-DCEFQHF 22 (23)
T ss_pred CCCccccCCCeeCCC-CCCcccc
Confidence 479999996699876 9999995
No 177
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.61 E-value=1.1 Score=48.82 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=22.7
Q ss_pred cccccccccc-cCcCCCCCCCCccccCC
Q 003111 561 GEAPLCVYFI-NGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 561 ~k~~~C~~f~-~G~C~~G~~C~FsH~~~ 587 (846)
....+||-|. +|.|.+|++|.|.|+..
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhh
Confidence 3467799997 69999999999999874
No 178
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=74.41 E-value=6.9 Score=50.08 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=82.3
Q ss_pred cceEEEcCcHHHHHHHHHHhcC-CCCCcEEEEecCCccHHHHHHHhhccC---CCeEEEEecCCCccccCCCCeEEEEeC
Q 003111 103 KSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICK---SHRKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~-~~~~~~v~~Lhs~l~~~~~~~~~~~~~---~~rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
..||||.-=...++-+-+.|.. .-+.+....|-|++++.+|.++.+.|. ...-.+|+|-+..-|+.+-|...||=
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF- 1419 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF- 1419 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE-
Confidence 4599999887777766655543 344566678999999999887776652 23455889999999999999999981
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
-+--|||-.. -+|.-||-|.|..+-=-+|||+|+...
T Consensus 1420 ---vEHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1420 ---VEHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred ---EecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccH
Confidence 1112555443 468889999998877779999998654
No 179
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=72.44 E-value=24 Score=43.62 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=78.5
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccC-C--CeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK-S--HRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~-~--~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
-||+|--+..-+.-+-.-|.. ..++..+-+-|.-+...+....+.|. + ..-.+|+|-+..-++++-+..=||
T Consensus 548 rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI---- 622 (923)
T KOG0387|consen 548 RVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI---- 622 (923)
T ss_pred EEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE----
Confidence 599999888766666555543 34588999999988887776665552 2 334577888888888887665444
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
.|||.=+ |-+=.+|.-|+-|-|-...=.+|||.+...-
T Consensus 623 ----IfDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 623 ----IFDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred ----EECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 2444422 1234678999999999998899999988654
No 180
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=72.27 E-value=36 Score=42.38 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=74.8
Q ss_pred eEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CCCeEEE-EecCCCccccCCCCeEEEEeCCC
Q 003111 105 ILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KSHRKVI-LATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 105 ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~~rKVI-lATnIAEtsiTIp~V~yVIDsG~ 180 (846)
--|.+..+..+.++...+-... +..++.|||.++..+|+.++..| .+.-+|. +||-...-||.+-|..=||
T Consensus 597 ~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli---- 671 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI---- 671 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE----
Confidence 3455566666666665554433 58999999999999988887655 3333664 5555555677776665554
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
.||+.=+ |.--.+|.-|+-|-|-..+-..|||.+...-
T Consensus 672 ----l~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 672 ----LFDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred ----EeCCCCC-------chhHHHHHHHhccCCCcceEEEEEeecCCCc
Confidence 3444322 3345678889999999999999999987543
No 181
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=1.5 Score=47.66 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=28.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 003111 590 RPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSS 622 (846)
Q Consensus 590 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~ 622 (846)
..+||-|-.+|.|.||+.|+|.|+...-..+|.
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~DyK~GWq 218 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ 218 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhccccce
Confidence 348999999999999999999999876666654
No 182
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=68.30 E-value=27 Score=42.70 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc--CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC--KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~--~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
+..+|+|.--..-|+-+-..|.-++ +..+-|-|+...+++..+..-. ...--.+|+|-...-+|.+-....||
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~--Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi--- 1118 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRG--YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI--- 1118 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhc--cceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE---
Confidence 3569998876666665555554443 7788999998877776665443 33345678999998999888888888
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
+||+.=+ |.--.+|.-|+-|.|.++.=.+|||.++..-
T Consensus 1119 -----FYdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1119 -----FYDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred -----EecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccH
Confidence 3554432 2234678899999999999999999998654
No 183
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=68.25 E-value=8 Score=47.83 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccH--HHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEE----
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDT--EQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVI---- 176 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~--~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVI---- 176 (846)
++-.|-+|.+.|++....+- ++..++.+-++... ..-+..+ ....|.-.|+|-|-+..-+..+|+|+.|.
T Consensus 485 ~L~~~G~GterieeeL~~~F---P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~a 561 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLF---PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDA 561 (730)
T ss_pred eeEEecccHHHHHHHHHHHC---CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEec
Confidence 46677789888887666654 45678888776643 2222333 44478889999999999999999999775
Q ss_pred eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCC-CCCcEEE
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 222 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~-~~G~c~r 222 (846)
|+|+- .++-+...- .=.-..|=+|||||. .+|..+-
T Consensus 562 D~~L~-----~~DfRA~Er-----~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 562 DTGLG-----SPDFRASER-----TFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred hhhhc-----CCCcchHHH-----HHHHHHHHHhhhccCCCCCeEEE
Confidence 66663 232221110 112256889999997 5677653
No 184
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=65.65 E-value=3.5 Score=45.78 Aligned_cols=30 Identities=30% Similarity=0.969 Sum_probs=25.1
Q ss_pred ccccccccccccCcCCCCCCCCccccCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQAK 589 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~~~ 589 (846)
+...-+|-||..|.|++|+.|+|.|+....
T Consensus 158 rn~p~Icsf~v~geckRG~ec~yrhEkp~d 187 (377)
T KOG0153|consen 158 RNRPHICSFFVKGECKRGAECPYRHEKPPD 187 (377)
T ss_pred CCCCccccceeeccccccccccccccCCCC
Confidence 345678999999999999999999988533
No 185
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=65.01 E-value=34 Score=42.87 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=82.0
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.||||.+-..-++-+...+.... +...-++|+++..++......+ ++..-.+++|-.+.++++.-+-..||
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi---- 786 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG--IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI---- 786 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE----
Confidence 49999999887777777776554 6788999999877776665544 23556677888999999988777777
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
.||+.-+ +.-..+|..|+-|.|+..+=..||+.++...
T Consensus 787 ----~~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 787 ----LFDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred ----EeccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 2444332 2235678889999999999999999998754
No 186
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=64.60 E-value=4.3 Score=37.87 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.1
Q ss_pred CCCCCCcchhhhhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 470 PTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 470 p~~~~~~~~~h~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
+.+.+|.+ ++.+..+.|++|++.+.|+ |.|||.|++
T Consensus 66 ~v~iHPsS----~l~~~~p~~vvy~e~~~t~----k~y~~~~t~ 101 (114)
T PF07717_consen 66 PVFIHPSS----VLFKKPPKWVVYHELVRTS----KPYMRDVTA 101 (114)
T ss_dssp EEEE-TTS----TTTTTT-SEEEEEEEEESS----SEEEEEEEE
T ss_pred EEEEecCc----cccccccccchhhhheecC----CcEEEECcC
Confidence 44555555 4678889999999999998 999999998
No 187
>PRK05580 primosome assembly protein PriA; Validated
Probab=63.10 E-value=12 Score=46.10 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.5
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
+.+||.+|+.+-+.++.+.+.... +..+..+||+++..++...+ +...+..+|||+|.-+- -+.+.++..||
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liV 263 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLII 263 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEE
Confidence 479999999998888888776533 25788999999887765544 34456678999997443 24466776655
No 188
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=61.91 E-value=40 Score=41.62 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=61.9
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCC---cEEEEecCCccHH---------------------HHHHHhhcc--CCCeE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSF---FKVHILHSSVDTE---------------------QALMAMKIC--KSHRK 155 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~---~~v~~Lhs~l~~~---------------------~~~~~~~~~--~~~rK 155 (846)
+|..+||..+.+......+.|...... ...+.++++-+.+ ....+.+.+ ++..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 477899999999888777766432211 2344455442221 001222333 24569
Q ss_pred EEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCC-CCCc
Q 003111 156 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 219 (846)
Q Consensus 156 VIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~-~~G~ 219 (846)
|++.+|..-||+..|.+..++ .|-. +.-..+.|-.||+-|. .+|+
T Consensus 594 ilIVvdmllTGFDaP~l~tLy---------ldKp----------lk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLY---------LDKP----------LKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred EEEEEcccccccCCCccceEE---------Eecc----------ccccHHHHHHHHhccccCCCC
Confidence 999999999999999988766 2211 1223577999999994 4554
No 189
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=61.19 E-value=8.7 Score=46.10 Aligned_cols=41 Identities=37% Similarity=0.857 Sum_probs=20.9
Q ss_pred cccccccccCcCCCCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCCC
Q 003111 563 APLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 563 ~~~C~~f~~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
.++||| .|+|++ -.|+|-|.. .|+|=. +|.+-.+|-|-|..
T Consensus 625 ~~~CrY--~pnCrn-m~C~F~HPk-----~cRf~~---~c~~~~sc~fYh~r 665 (681)
T KOG3702|consen 625 RGLCRY--RPNCRN-MQCKFYHPK-----TCRFNT---NCPNNPSCTFYHER 665 (681)
T ss_pred ccccee--ccCcCC-ccccccCCc-----cccccc---cCCCCcccccccCC
Confidence 344555 234544 346666644 355532 35555566666653
No 190
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=61.13 E-value=70 Score=40.58 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEec
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT 160 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlAT 160 (846)
+..+.+++.|..+. .. +|.+||+.|+++.++.+...|... ...++.=..+.+... +.+.+ .+...|+++|
T Consensus 631 ~~~~~~~~~i~~~~-~~---~g~~LVLFtS~~~l~~v~~~l~~~--~~~~l~Qg~~~~~~~---l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 631 VYAEEIAKRLEELK-QL---QQPILVLFNSKKHLLAVSDLLDQW--QVSHLAQEKNGTAYN---IKKRFDRGEQQILLGL 701 (820)
T ss_pred HHHHHHHHHHHHHH-hc---CCCEEEEECcHHHHHHHHHHHhhc--CCcEEEeCCCccHHH---HHHHHHcCCCeEEEec
Confidence 34466777777776 32 478999999999999998888643 233322222223322 22222 3556899999
Q ss_pred CCCccccCCCC--eEEEEeCCCcceeeecCCCCc-------------ccceeeecC--HhhHHhhcCCCCCCCC--CcEE
Q 003111 161 NIAESSVTIPK--VAYVIDSCRSLQVFWDVNRKI-------------DSAELVWVS--QSQAEQRRGRTGRTCD--GQVY 221 (846)
Q Consensus 161 nIAEtsiTIp~--V~yVIDsG~~k~~~yd~~~~~-------------~~l~~~~IS--kasa~QR~GRaGR~~~--G~c~ 221 (846)
.-.=-||.+|+ ...||= .|.++-.|..-. ......-+. --..+|=.||.=|... |..+
T Consensus 702 ~sFwEGVD~p~~~~~~viI---~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVI---TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred chhhCCCCCCCCCeEEEEE---ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 77777899873 344331 233333332211 111111122 2346788889888774 8766
Q ss_pred Ee
Q 003111 222 RL 223 (846)
Q Consensus 222 rL 223 (846)
-|
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 44
No 191
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.76 E-value=5.4 Score=42.84 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=40.8
Q ss_pred EEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeecc
Q 003111 157 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTK 226 (846)
Q Consensus 157 IlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~ 226 (846)
+||||+..+++.|..|..|++ ||-.. +-.+..+|.|||||-+. |..+...+.
T Consensus 302 ~vat~lfgrgmdiervNi~~N--------Ydmp~----------~~DtYlHrv~rAgrfGtkglaitfvs~ 354 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSD 354 (387)
T ss_pred hHHhhhhccccCcccceeeec--------cCCCC----------CchHHHHHhhhhhccccccceeehhcc
Confidence 899999999999999999997 44433 33466789999999875 766665554
No 192
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.75 E-value=33 Score=40.88 Aligned_cols=72 Identities=25% Similarity=0.294 Sum_probs=50.7
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
+.+||.+|+..-+.++.+.++...+ ..+..+||+++..++...+ +...|.-+|||+|.-|= -.-+.++..||
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lII 98 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLII 98 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEE
Confidence 4699999999988888877765322 4578899999887765544 34466678999997432 23355666555
No 193
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=53.84 E-value=52 Score=33.32 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC----
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI---- 162 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI---- 162 (846)
.++..+.......++.+||..|+.+-+.+....+... ..+..+..++|+.+..+...... +...|+|+|+-
T Consensus 56 ~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~T~~~l~~ 132 (203)
T cd00268 56 PILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK---RGPHIVVATPGRLLD 132 (203)
T ss_pred HHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc---CCCCEEEEChHHHHH
Confidence 3444444431112356999999998777665544322 13577888999987765443322 34579999951
Q ss_pred --CccccCCCCeEEEE
Q 003111 163 --AESSVTIPKVAYVI 176 (846)
Q Consensus 163 --AEtsiTIp~V~yVI 176 (846)
......++++.+||
T Consensus 133 ~l~~~~~~~~~l~~lI 148 (203)
T cd00268 133 LLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHcCCCChhhCCEEE
Confidence 12234566677666
No 194
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=53.69 E-value=18 Score=43.62 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=12.4
Q ss_pred ecCCcccchhhhcccccchh
Q 003111 685 CDTSLAGIRILWGLCHSLKT 704 (846)
Q Consensus 685 ~~~~~~g~~~~~~~~~~~~~ 704 (846)
|-=-|++-.+-|-+.||-.-
T Consensus 628 CrY~pnCrnm~C~F~HPk~c 647 (681)
T KOG3702|consen 628 CRYRPNCRNMQCKFYHPKTC 647 (681)
T ss_pred ceeccCcCCccccccCCccc
Confidence 33346677777777777543
No 195
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=52.76 E-value=36 Score=40.69 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh-CCCcccc-eEEEcCcHHHHHHHHHHhcCC---CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEe
Q 003111 85 KLIHDLVLHIHKN-ESDIEKS-ILVFLPTYYALEQQWHLMKPL---SSFFKVHILHSSVDTEQALMAMKICKSHRKVILA 159 (846)
Q Consensus 85 ~li~~li~~I~~~-~~~~~G~-ILVFLPg~~eI~~~~~~L~~~---~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA 159 (846)
..++-++.+|... .. ... .||+.|+++-+.++.+.+... ...+.+..++|+++...|...++. + ..|||+
T Consensus 82 Af~lP~l~~l~~~~~~--~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~--~-~~ivVa 156 (513)
T COG0513 82 AFLLPLLQKILKSVER--KYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR--G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHhccccc--CCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc--C-CCEEEE
Confidence 3445666666632 22 122 899999998666666555432 225789999999998877654433 3 789999
Q ss_pred cC------CCccccCCCCeEEEE
Q 003111 160 TN------IAESSVTIPKVAYVI 176 (846)
Q Consensus 160 Tn------IAEtsiTIp~V~yVI 176 (846)
|+ +....+.+.+|.++|
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEE
Confidence 98 222346666777666
No 196
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=50.47 E-value=8.4 Score=42.94 Aligned_cols=25 Identities=28% Similarity=0.797 Sum_probs=23.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCC
Q 003111 590 RPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 590 ~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
..+|-||.. |.|+.|+.|.|.|+.+
T Consensus 161 p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred Cccccceee-ccccccccccccccCC
Confidence 448999999 8999999999999987
No 197
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.51 E-value=48 Score=39.53 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEEE
Q 003111 104 SILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAYV 175 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~yV 175 (846)
.+||-.|+++=..++........ ..++..+++|+.+...|..-.+ ..-.|++||+ +=+.++.+-.|.||
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~gvdiviaTPGRl~d~le~g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---RGVDVVIATPGRLIDLLEEGSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---cCCcEEEeCChHHHHHHHcCCccccceeEE
Confidence 48999999986555554443322 2367999999998877654332 2347999997 33455667789998
Q ss_pred E
Q 003111 176 I 176 (846)
Q Consensus 176 I 176 (846)
|
T Consensus 244 V 244 (519)
T KOG0331|consen 244 V 244 (519)
T ss_pred E
Confidence 8
No 198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.67 E-value=24 Score=43.77 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=54.5
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecCCCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM-KICKSHRKVILATNIAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATnIAEtsiTIp~V~yVI 176 (846)
..+||-+|......++...+..+.+ .++..|||+|+..++.... ++..|.-+||+=|=-|=. .-+++...||
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLII 318 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEE
Confidence 4799999999988888888876544 7789999999998877665 566788899998864421 1245666555
No 199
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=45.12 E-value=10 Score=40.68 Aligned_cols=28 Identities=29% Similarity=0.614 Sum_probs=24.9
Q ss_pred ccccccccccccCcCCCCCCCCccccCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~ 587 (846)
..+..+|..|..+.|.+|..|-|.|-..
T Consensus 149 ~~rea~C~~~e~~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 149 DFREAICGQFERTECSRGGACNFMHVKR 176 (260)
T ss_pred chhhhhhcccccccCCCCCcCcchhhhh
Confidence 4577889999999999999999999874
No 200
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=44.68 E-value=36 Score=40.61 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred eEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 105 ILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 105 ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
-|||-|+++=..++...|... ...+.+..+.|+|+...|+++++. +..|||||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~---~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ---RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc---CCCEEEecc
Confidence 699999998777777666432 346899999999999888777654 457999998
No 201
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=44.53 E-value=6.8 Score=41.33 Aligned_cols=26 Identities=35% Similarity=0.879 Sum_probs=23.6
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 588 AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 588 ~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
.++.+|-.|.. +.|..|+.|.|+|..
T Consensus 83 pK~~vcalF~~-~~c~kg~~ckF~h~~ 108 (299)
T COG5252 83 PKTVVCALFLN-KTCAKGDACKFAHGK 108 (299)
T ss_pred chhHHHHHhcc-CccccCchhhhhcch
Confidence 46779999998 999999999999984
No 202
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.37 E-value=62 Score=38.35 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhC--CCcccceEE-EcCcHHHHH---HHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEE
Q 003111 85 KLIHDLVLHIHKNE--SDIEKSILV-FLPTYYALE---QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVIL 158 (846)
Q Consensus 85 ~li~~li~~I~~~~--~~~~G~ILV-FLPg~~eI~---~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIl 158 (846)
..|...+.||...+ .+++|.|+| .+|+++-.. ..++.+.. .-++.++.+|++.+..+|...++ ..--|||
T Consensus 276 Afi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K-~ygl~~v~~ygGgsk~eQ~k~Lk---~g~EivV 351 (731)
T KOG0339|consen 276 AFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK-AYGLRVVAVYGGGSKWEQSKELK---EGAEIVV 351 (731)
T ss_pred HHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh-hccceEEEeecCCcHHHHHHhhh---cCCeEEE
Confidence 34556677776554 234677754 567776333 34444422 23588999999999999876655 2347999
Q ss_pred ecCCCccc--------cCCCCeEEEE
Q 003111 159 ATNIAESS--------VTIPKVAYVI 176 (846)
Q Consensus 159 ATnIAEts--------iTIp~V~yVI 176 (846)
||+ ++- +++-.|.|.|
T Consensus 352 aTP--gRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 352 ATP--GRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred ech--HHHHHHHHhhcccceeeeEEE
Confidence 997 333 3555666555
No 203
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=44.06 E-value=52 Score=41.56 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHh-----CCCcccceEEEcCcHHHHHHHHHHh
Q 003111 84 HKLIHDLVLHIHKN-----ESDIEKSILVFLPTYYALEQQWHLM 122 (846)
Q Consensus 84 ~~li~~li~~I~~~-----~~~~~G~ILVFLPg~~eI~~~~~~L 122 (846)
.+.+.+++..|... ...++|.||||......+.++.+.|
T Consensus 272 w~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L 315 (814)
T TIGR00596 272 WEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYL 315 (814)
T ss_pred HHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHH
Confidence 45566666666544 1123577999999987776666655
No 204
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.54 E-value=56 Score=40.63 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC------CcEEEEecCCccHHHHHHHhhcc----
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------FFKVHILHSSVDTEQALMAMKIC---- 150 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~------~~~v~~Lhs~l~~~~~~~~~~~~---- 150 (846)
++.++-+.++|..+.+.-| |++|||+|++.-++++...+...+. ...++.=..+. .+...+++.+
T Consensus 504 ~~~~~~l~~~i~~~~~~~p---gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~ 578 (705)
T TIGR00604 504 PSLVRNLGELLVEFSKIIP---DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAV 578 (705)
T ss_pred HHHHHHHHHHHHHHhhcCC---CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHH
Confidence 3456667788888887654 7899999999999887776643210 01111111111 1222222222
Q ss_pred -CCCeEEEEec--CCCccccCCCC--eEEEEeCCCc
Q 003111 151 -KSHRKVILAT--NIAESSVTIPK--VAYVIDSCRS 181 (846)
Q Consensus 151 -~~~rKVIlAT--nIAEtsiTIp~--V~yVIDsG~~ 181 (846)
.+.--|++|+ ...--||.++| .+.||=.|+-
T Consensus 579 ~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlP 614 (705)
T TIGR00604 579 SEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIP 614 (705)
T ss_pred hcCCceEEEEecCCcccCccccCCCCCcEEEEEccC
Confidence 2334699998 54555898887 4555546653
No 205
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=42.15 E-value=61 Score=41.11 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=76.5
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHH---HHHHHHHhcCCC-----------------CCcEEEEecCCccHHHHHHHhhc
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYA---LEQQWHLMKPLS-----------------SFFKVHILHSSVDTEQALMAMKI 149 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~e---I~~~~~~L~~~~-----------------~~~~v~~Lhs~l~~~~~~~~~~~ 149 (846)
+++.|.+.-...+..+|||--+... |+....+....+ .+-..+.|-|+...++++...+.
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 3444444433334569999665554 444443332211 12346778888888877766544
Q ss_pred c---C--CCeEEEEecCCCccccCCCC--eEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEE
Q 003111 150 C---K--SHRKVILATNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYR 222 (846)
Q Consensus 150 ~---~--~~rKVIlATnIAEtsiTIp~--V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~r 222 (846)
| . ..|-.+++|-..--+|.+-. -+.++|.+ |||...+. +.=|.-|-|.+.|-..||
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas------WNPSyDtQ-----------SIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDAS------WNPSYDTQ-----------SIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecc------cCCccchH-----------HHHHHHhhcCcCceeehh
Confidence 4 2 24677899987766766543 33444654 78877654 455899999999999999
Q ss_pred eecccc
Q 003111 223 LVTKSF 228 (846)
Q Consensus 223 Lyt~~~ 228 (846)
|+..-.
T Consensus 1273 fiAqGT 1278 (1567)
T KOG1015|consen 1273 FIAQGT 1278 (1567)
T ss_pred hhhccc
Confidence 987644
No 206
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=41.10 E-value=45 Score=41.33 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=51.8
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecC-CCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMK-ICKSHRKVILATN-IAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATn-IAEtsiTIp~V~yVI 176 (846)
..+||..|+..=+.+..+.+.... .++.+..+||+++..++..... ...|...|||+|. .....+.+.++.+||
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 468999999876666665554332 2378999999998877655543 4466789999996 334455677777766
No 207
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=39.32 E-value=66 Score=37.56 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=48.1
Q ss_pred ceEEEcCcHHHHHHHHHHhcC---CCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEE
Q 003111 104 SILVFLPTYYALEQQWHLMKP---LSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAY 174 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~---~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~y 174 (846)
.+||.+|+.+=+.++.+.++. ....+.+..++|+.+.+.+....+ ....|||+|+ +....+.+.++.+
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---HGAHIIVGTPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---CCCCEEEEChHHHHHHHHcCCccHHHCCE
Confidence 589999999866666554442 223588999999998877654433 3457999994 2223466778887
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 151 lV 152 (460)
T PRK11776 151 LV 152 (460)
T ss_pred EE
Confidence 77
No 208
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.11 E-value=1.3e+02 Score=37.03 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=48.4
Q ss_pred cceEEEcCcHHHHHHHHHHhcC---CCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeE
Q 003111 103 KSILVFLPTYYALEQQWHLMKP---LSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~---~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~ 173 (846)
..+||.+|+.+=+.++...+.. ....+.+..+|++.+.+.+....+ ..-.|||+|+ +....+.+.++.
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~---~~~~IVVgTPgrl~d~l~r~~l~l~~l~ 151 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR---QGPQIVVGTPGRLLDHLKRGTLDLSKLS 151 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4699999999766666555432 234588999999988776654432 2347999995 222345677888
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 152 ~lV 154 (629)
T PRK11634 152 GLV 154 (629)
T ss_pred EEE
Confidence 776
No 209
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=35.55 E-value=1.4e+02 Score=34.44 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=45.8
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAY 174 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~y 174 (846)
+.+||..|+.+=+.++.+.+... ...+.+..++|+.+...+..... +...|||+|+ +.+..+...+|.+
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~ 150 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---ENQDIVVATPGRLLQYIKEENFDCRAVET 150 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---CCCCEEEEChHHHHHHHHcCCcCcccCCE
Confidence 57999999998666654443321 23478899999998777654432 3347999996 1122345566666
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 151 lV 152 (434)
T PRK11192 151 LI 152 (434)
T ss_pred EE
Confidence 65
No 210
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.99 E-value=1.5e+02 Score=34.13 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=47.3
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAY 174 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~y 174 (846)
..+||.+|+.+=+.++.+.+... ..++.+..++|+.+.+.+....+ ....|||+|+ +-+..+.+.+|.+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~~~~IlV~TP~~l~~~l~~~~~~l~~v~~ 160 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE---SGVDILIGTTGRLIDYAKQNHINLGAIQV 160 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCcccccccE
Confidence 35899999998666654443221 22478888999987766544332 2347999997 2234567888888
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 161 lV 162 (423)
T PRK04837 161 VV 162 (423)
T ss_pred EE
Confidence 77
No 211
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=34.94 E-value=1.5e+02 Score=34.82 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=54.8
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecCCCc--cccCCCCeEEEEeC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK-ICKSHRKVILATNIAE--SSVTIPKVAYVIDS 178 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATnIAE--tsiTIp~V~yVIDs 178 (846)
.+.+|||+|++-|-.++.+.|.. .++....+|--.+..+..++-. .+.|.++|+|-|-=+- .--.|.||+.||=-
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk~--~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLKK--ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHHh--cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 46899999999999999998874 3467777776655555433333 3478899999993322 23588999999944
Q ss_pred CC
Q 003111 179 CR 180 (846)
Q Consensus 179 G~ 180 (846)
|.
T Consensus 378 ~~ 379 (442)
T PF06862_consen 378 GP 379 (442)
T ss_pred CC
Confidence 43
No 212
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.25 E-value=1.7e+02 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=47.1
Q ss_pred ceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEEE
Q 003111 104 SILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAYV 175 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~yV 175 (846)
.+||.+|+.+=+.++.+.+... ...+.+..++++.+.+.+.... .+...|||+|+ +....+.+.++.+|
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL---RGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH---cCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 5899999998666665554432 2347788899998877654322 23458999996 23445567788877
Q ss_pred E
Q 003111 176 I 176 (846)
Q Consensus 176 I 176 (846)
|
T Consensus 154 V 154 (456)
T PRK10590 154 V 154 (456)
T ss_pred E
Confidence 6
No 213
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=32.26 E-value=20 Score=23.84 Aligned_cols=10 Identities=50% Similarity=1.414 Sum_probs=8.2
Q ss_pred ceeEEEecCC
Q 003111 718 EVKCVLWYPS 727 (846)
Q Consensus 718 ~~~~~~~~~~ 727 (846)
++|||-||-+
T Consensus 2 eikCiNWFE~ 11 (22)
T PF08452_consen 2 EIKCINWFES 11 (22)
T ss_pred ccEEeehhhh
Confidence 6899999854
No 214
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=31.95 E-value=26 Score=30.87 Aligned_cols=33 Identities=21% Similarity=0.015 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhcCCcccCCCCCCcccccccceecc
Q 003111 277 EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLAS 312 (846)
Q Consensus 277 ~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~ 312 (846)
..+..|++.|.+.|.|+.+ +|. -||+.|...++
T Consensus 34 p~~i~a~~RLheKGLI~~p--dGg-yLT~~G~~~aE 66 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQP--DGG-YLTSLGLEAAE 66 (77)
T ss_pred HHHHHHHHHHHHcCCccCC--CCC-EecHHHHHHHH
Confidence 4577899999999999874 366 59999987763
No 215
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=30.62 E-value=1.1e+02 Score=39.45 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=54.1
Q ss_pred cccccChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC----C-CCcEEEEecCCccHHHHHHHhhc
Q 003111 75 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----S-SFFKVHILHSSVDTEQALMAMKI 149 (846)
Q Consensus 75 ~~~~i~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~----~-~~~~v~~Lhs~l~~~~~~~~~~~ 149 (846)
+.+....+-+.+++.+.. ..+ ++.+++.+||..=+.++++.|... + ....+. +||.|+..+.+.+.+.
T Consensus 104 APTGvGKTTfg~~~sl~~--a~k----gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~ 176 (1187)
T COG1110 104 APTGVGKTTFGLLMSLYL--AKK----GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALER 176 (1187)
T ss_pred cCCCCchhHHHHHHHHHH--Hhc----CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHH
Confidence 344555666776655433 222 246899999998888887777542 1 233344 8999999887777654
Q ss_pred -cCCCeEEEEecCC
Q 003111 150 -CKSHRKVILATNI 162 (846)
Q Consensus 150 -~~~~rKVIlATnI 162 (846)
..|.-+|+|+|+-
T Consensus 177 i~~gdfdIlitTs~ 190 (1187)
T COG1110 177 IESGDFDILITTSQ 190 (1187)
T ss_pred HhcCCccEEEEeHH
Confidence 4677899999873
No 216
>PTZ00110 helicase; Provisional
Probab=28.54 E-value=1.8e+02 Score=35.09 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=44.5
Q ss_pred ceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC-----CCc-cccCCCCeEEE
Q 003111 104 SILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAE-SSVTIPKVAYV 175 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn-----IAE-tsiTIp~V~yV 175 (846)
-+||..|+.+=+.++...+... ...+.+..++++.+...+..... ....|||+|+ ..+ ..+.+..++||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~---~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR---RGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH---cCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 4789999987655555444332 23477888999988766543332 2247999996 333 33456777766
Q ss_pred E
Q 003111 176 I 176 (846)
Q Consensus 176 I 176 (846)
|
T Consensus 282 V 282 (545)
T PTZ00110 282 V 282 (545)
T ss_pred E
Confidence 6
No 217
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=28.27 E-value=1.5e+02 Score=35.87 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=47.0
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC-----CCcc--ccCCCCeE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAES--SVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn-----IAEt--siTIp~V~ 173 (846)
.-+||.+|+.+=+.++.+.+... ...+.+..+||+.+.+.+....+ +...|||+|+ .+.. .+.+..+.
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---QGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---CCCCEEEECHHHHHHHHHhccccchhhee
Confidence 46999999998776666554332 23478899999998877655442 2357999995 2222 24566666
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 162 ~lV 164 (572)
T PRK04537 162 ICV 164 (572)
T ss_pred eeE
Confidence 555
No 218
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=28.09 E-value=1.6e+02 Score=28.46 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=39.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHH-HHHHHhhccCCCeEEEEecC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTE-QALMAMKICKSHRKVILATN 161 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~-~~~~~~~~~~~~rKVIlATn 161 (846)
+.+|+.+|+.+-+++....+.... ....+..+|++.+.+ +..... .+...|+|+|.
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ilv~T~ 103 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SNQADILVTTP 103 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HTTSSEEEEEH
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc---cccccccccCc
Confidence 579999999998888777665432 347889999998755 333222 23457888875
No 219
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.69 E-value=1.2e+02 Score=36.21 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=47.2
Q ss_pred ceEEEcCcHHHHH---HHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC-------CccccCCCCeE
Q 003111 104 SILVFLPTYYALE---QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI-------AESSVTIPKVA 173 (846)
Q Consensus 104 ~ILVFLPg~~eI~---~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI-------AEtsiTIp~V~ 173 (846)
.|||.+|+++=.. .+...|.... .+.+...-|+|+-..|+.+++.. ..|||||+= ---|+++++|-
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~---PDIVIATPGRlIDHlrNs~sf~ldsiE 329 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR---PDIVIATPGRLIDHLRNSPSFNLDSIE 329 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC---CCEEEecchhHHHHhccCCCcccccee
Confidence 5999999997443 3444554433 36666778999988888777543 379999971 12467777777
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+.|
T Consensus 330 VLv 332 (691)
T KOG0338|consen 330 VLV 332 (691)
T ss_pred EEE
Confidence 655
No 220
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=26.11 E-value=1.1e+02 Score=37.55 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=49.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCC--CcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecCCC-ccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMK-ICKSHRKVILATNIA-ESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~--~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATnIA-EtsiTIp~V~yVI 176 (846)
..+||-.|+..=+++..+.+..... ++.+..+||+++..++..... ...|...|||+|.-. ...+.+.++.+||
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4689999998766666555543222 488999999998877655443 345667899999732 1234455666655
No 221
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.83 E-value=2.5e+02 Score=32.91 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=45.7
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAY 174 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~y 174 (846)
.-+||.+|+.+=+.++.+.+... ...+.+..++|+.+.+.+..... .+.-.|||+|+ .....+.+.++.|
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~--~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE--ARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHh--CCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 45899999998666655544332 12478889999987665433222 23347999996 2233455667776
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 241 lV 242 (475)
T PRK01297 241 MV 242 (475)
T ss_pred EE
Confidence 66
No 222
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.62 E-value=1.1e+02 Score=33.39 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=52.5
Q ss_pred cceEEEcCcHH---HHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeE
Q 003111 103 KSILVFLPTYY---ALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~---eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~ 173 (846)
-++||..-+++ .|.+-+.....-.+..++-.++|+++......+++ ++..|||+|+ +-+.++.+.+|+
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk---~~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK---NCPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh---CCCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 36788888876 34444444444456789999999998765554444 3678999998 557889999998
Q ss_pred -EEEeCC
Q 003111 174 -YVIDSC 179 (846)
Q Consensus 174 -yVIDsG 179 (846)
+|+|-|
T Consensus 188 hFvlDEc 194 (387)
T KOG0329|consen 188 HFVLDEC 194 (387)
T ss_pred eeehhhH
Confidence 566644
No 223
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.13 E-value=1.2e+02 Score=38.99 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecC-CCccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMK-ICKSHRKVILATN-IAESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATn-IAEtsiTIp~V~yVI 176 (846)
..+||.+|+..=+.+....+.... -.+.+..|+|.++..++....+ ...|...|||+|. +....+.+.++.+||
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 469999999987777666554322 2367888999988776655543 3456678999997 233345677777666
No 224
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=21.41 E-value=2.4e+02 Score=35.38 Aligned_cols=77 Identities=30% Similarity=0.299 Sum_probs=50.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHH-HHHhhccCCCeEEEEec-CCCcccc------CCCCeE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQA-LMAMKICKSHRKVILAT-NIAESSV------TIPKVA 173 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~-~~~~~~~~~~rKVIlAT-nIAEtsi------TIp~V~ 173 (846)
+|.=||-+|.- .++...+.+....+.+.|.++||+...... +..++..++.-.|||+| |+|+++- .--...
T Consensus 448 ~gpHLVVvPsS-TleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n 526 (941)
T KOG0389|consen 448 PGPHLVVVPSS-TLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFN 526 (941)
T ss_pred CCCcEEEecch-hHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhcccc
Confidence 57789999974 566666667777888999999999633221 12233344467888888 7777652 223455
Q ss_pred EEE-eCC
Q 003111 174 YVI-DSC 179 (846)
Q Consensus 174 yVI-DsG 179 (846)
||| |=|
T Consensus 527 ~viyDEg 533 (941)
T KOG0389|consen 527 YVIYDEG 533 (941)
T ss_pred EEEecch
Confidence 777 444
No 225
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.09 E-value=2.5e+02 Score=32.90 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC---
Q 003111 87 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN--- 161 (846)
Q Consensus 87 i~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn--- 161 (846)
++-.+.++.... ..+-..||-.|+.+=..+..+..... +.++....++|+-..++|-..+. +...||+||+
T Consensus 76 ~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~---~npDii~ATpgr~ 151 (529)
T KOG0337|consen 76 LIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN---ENPDIIIATPGRL 151 (529)
T ss_pred HHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc---cCCCEEEecCcee
Confidence 344555554444 11224688889987544444444332 33466666666657777754432 2236788876
Q ss_pred ---CCccccCCCCeEEEE
Q 003111 162 ---IAESSVTIPKVAYVI 176 (846)
Q Consensus 162 ---IAEtsiTIp~V~yVI 176 (846)
.+|..+++..|.|||
T Consensus 152 ~h~~vem~l~l~sveyVV 169 (529)
T KOG0337|consen 152 LHLGVEMTLTLSSVEYVV 169 (529)
T ss_pred eeeehheeccccceeeee
Confidence 688889999999999
No 226
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=20.41 E-value=5.9e+02 Score=31.54 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccH-HHHHHHhhc--cCCCeEEEEe
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDT-EQALMAMKI--CKSHRKVILA 159 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~-~~~~~~~~~--~~~~rKVIlA 159 (846)
..+.+.+.+..+.... +|..||-.+++..++.+...|..... +. +.+.|..+. .+...-++. ..+..-|+++
T Consensus 454 ~~~~~~~~~~~~~~~~---~G~~lvLfTS~~~~~~~~~~l~~~l~-~~-~l~qg~~~~~~~l~~~f~~~~~~~~~~vL~g 528 (636)
T TIGR03117 454 WLENVSLSTAAILRKA---QGGTLVLTTAFSHISAIGQLVELGIP-AE-IVIQSEKNRLASAEQQFLALYANGIQPVLIA 528 (636)
T ss_pred HHHHHHHHHHHHHHHc---CCCEEEEechHHHHHHHHHHHHhhcC-CC-EEEeCCCccHHHHHHHHHHhhcCCCCcEEEe
Confidence 3444556666676654 47899999999999999998865432 33 334555432 322222222 2345799999
Q ss_pred cCCCccccCC
Q 003111 160 TNIAESSVTI 169 (846)
Q Consensus 160 TnIAEtsiTI 169 (846)
|.-+=.||.|
T Consensus 529 t~sfweGvDv 538 (636)
T TIGR03117 529 AGGAWTGIDL 538 (636)
T ss_pred CCcccccccc
Confidence 9888889999
Done!