Query 003111
Match_columns 846
No_of_seqs 563 out of 3320
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 3.2E-63 1.1E-67 601.3 33.5 448 1-541 246-750 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 1.5E-33 5.1E-38 301.5 13.8 215 261-523 2-253 (270)
3 2va8_A SSO2462, SKI2-type heli 100.0 3E-31 1E-35 319.3 19.4 317 1-357 181-552 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-28 4.9E-33 295.6 22.2 302 1-354 178-529 (702)
5 2zj8_A DNA helicase, putative 99.9 6.1E-26 2.1E-30 273.5 21.9 306 1-358 175-538 (720)
6 3eaq_A Heat resistant RNA depe 99.8 5.4E-21 1.9E-25 197.0 13.5 175 90-286 21-211 (212)
7 3i32_A Heat resistant RNA depe 99.8 1.7E-20 5.7E-25 203.7 12.5 180 90-291 18-213 (300)
8 3rc3_A ATP-dependent RNA helic 99.7 7.2E-17 2.5E-21 192.6 8.0 170 102-294 321-499 (677)
9 2jlq_A Serine protease subunit 99.6 1.3E-15 4.4E-20 174.0 10.5 117 102-226 188-310 (451)
10 2z83_A Helicase/nucleoside tri 99.6 1.9E-15 6.6E-20 173.0 7.8 118 102-227 190-313 (459)
11 3o8b_A HCV NS3 protease/helica 99.5 6.9E-15 2.4E-19 174.4 8.9 118 102-230 396-517 (666)
12 4f92_B U5 small nuclear ribonu 99.5 4.1E-14 1.4E-18 183.8 13.0 231 102-342 317-620 (1724)
13 4a4z_A Antiviral helicase SKI2 99.5 4.8E-14 1.6E-18 175.4 10.2 115 102-226 336-491 (997)
14 1fuk_A Eukaryotic initiation f 99.4 3.1E-13 1E-17 133.1 11.4 107 102-228 30-138 (165)
15 3l9o_A ATP-dependent RNA helic 99.4 2.7E-13 9.3E-18 170.1 12.7 129 87-228 429-598 (1108)
16 4f92_B U5 small nuclear ribonu 99.4 2.6E-13 9E-18 176.2 12.9 226 102-340 1155-1449(1724)
17 2rb4_A ATP-dependent RNA helic 99.4 8.6E-13 2.9E-17 131.1 13.4 123 90-228 24-148 (175)
18 2hjv_A ATP-dependent RNA helic 99.4 8.1E-13 2.8E-17 129.9 12.1 107 102-228 35-143 (163)
19 1yks_A Genome polyprotein [con 99.4 2.7E-13 9.2E-18 154.4 7.9 116 103-225 178-297 (440)
20 2ykg_A Probable ATP-dependent 99.4 1.6E-13 5.6E-18 163.8 5.8 149 84-253 382-552 (696)
21 3eiq_A Eukaryotic initiation f 99.4 3.8E-13 1.3E-17 149.5 8.1 119 89-229 269-389 (414)
22 2whx_A Serine protease/ntpase/ 99.4 4.5E-13 1.5E-17 158.8 8.9 118 102-226 355-477 (618)
23 2d9n_A Cleavage and polyadenyl 99.3 4.6E-13 1.6E-17 116.3 4.8 60 557-617 4-64 (77)
24 2jgn_A DBX, DDX3, ATP-dependen 99.3 1.9E-12 6.4E-17 130.4 9.7 108 102-229 46-155 (185)
25 2wv9_A Flavivirin protease NS2 99.3 1.8E-12 6.3E-17 154.9 10.0 117 102-225 410-531 (673)
26 2v6i_A RNA helicase; membrane, 99.3 1.6E-12 5.6E-17 147.6 8.8 116 102-225 171-288 (431)
27 1s2m_A Putative ATP-dependent 99.3 3.8E-12 1.3E-16 141.1 11.4 108 102-229 258-367 (400)
28 3fht_A ATP-dependent RNA helic 99.3 3.6E-12 1.2E-16 141.3 11.2 112 102-227 266-379 (412)
29 2i4i_A ATP-dependent RNA helic 99.3 3.1E-12 1.1E-16 142.4 10.3 109 102-230 276-386 (417)
30 1oyw_A RECQ helicase, ATP-depe 99.3 7.7E-12 2.6E-16 145.5 14.0 108 102-229 236-345 (523)
31 2rhk_C Cleavage and polyadenyl 99.3 4.2E-13 1.4E-17 114.9 2.3 57 560-617 13-70 (72)
32 3pey_A ATP-dependent RNA helic 99.3 5.5E-12 1.9E-16 138.6 11.6 123 89-227 232-356 (395)
33 1t5i_A C_terminal domain of A 99.3 5.2E-12 1.8E-16 125.5 10.2 115 91-227 22-138 (172)
34 2xgj_A ATP-dependent RNA helic 99.3 7.4E-12 2.5E-16 155.9 13.9 126 89-227 333-499 (1010)
35 1hv8_A Putative ATP-dependent 99.3 4.5E-12 1.5E-16 137.9 10.4 109 102-230 238-348 (367)
36 2p6n_A ATP-dependent RNA helic 99.3 4.3E-12 1.5E-16 128.5 9.2 105 103-227 55-161 (191)
37 2j0s_A ATP-dependent RNA helic 99.3 7.4E-12 2.5E-16 139.4 9.3 107 103-229 277-385 (410)
38 2yjt_D ATP-dependent RNA helic 98.9 6.3E-13 2.1E-17 131.6 0.0 108 102-229 30-139 (170)
39 3sqw_A ATP-dependent RNA helic 99.2 2.5E-11 8.6E-16 142.5 13.4 109 102-228 288-399 (579)
40 2cqe_A KIAA1064 protein; CCCH 99.2 3.5E-12 1.2E-16 115.7 4.6 52 560-615 10-61 (98)
41 2v1x_A ATP-dependent DNA helic 99.2 2.2E-11 7.6E-16 143.7 12.5 108 102-229 267-376 (591)
42 2z0m_A 337AA long hypothetical 99.2 2.6E-11 8.7E-16 130.5 11.4 101 102-226 220-322 (337)
43 1xti_A Probable ATP-dependent 99.2 5.8E-11 2E-15 130.8 13.3 106 102-227 250-357 (391)
44 2db3_A ATP-dependent RNA helic 99.2 4.7E-11 1.6E-15 135.3 12.4 104 104-227 302-407 (434)
45 3i5x_A ATP-dependent RNA helic 99.2 3.6E-11 1.2E-15 140.1 11.5 109 102-228 339-450 (563)
46 1m9o_A Tristetraproline; Cys3H 99.2 8.2E-12 2.8E-16 108.2 3.4 59 557-615 6-75 (77)
47 1wp9_A ATP-dependent RNA helic 99.2 3.4E-11 1.1E-15 134.8 9.2 124 84-229 345-477 (494)
48 4a2p_A RIG-I, retinoic acid in 99.2 4.3E-11 1.5E-15 138.1 9.2 125 84-229 374-510 (556)
49 3fho_A ATP-dependent RNA helic 99.2 1.1E-11 3.7E-16 143.5 4.2 112 102-227 357-470 (508)
50 3tbk_A RIG-I helicase domain; 99.1 4.2E-11 1.4E-15 137.8 8.9 125 84-229 373-509 (555)
51 1fuu_A Yeast initiation factor 99.1 5E-12 1.7E-16 139.3 0.0 110 102-231 259-370 (394)
52 3d2q_A Muscleblind-like protei 99.1 2.1E-11 7.2E-16 103.9 2.0 53 560-614 3-64 (70)
53 3fmp_B ATP-dependent RNA helic 99.1 1.1E-11 3.6E-16 141.8 0.0 113 102-228 333-447 (479)
54 2e5s_A Otthump00000018578; ZF- 99.0 2.7E-11 9.2E-16 109.8 0.6 54 559-614 16-78 (98)
55 2eyq_A TRCF, transcription-rep 99.0 5.2E-10 1.8E-14 141.2 12.0 109 102-227 812-922 (1151)
56 4gl2_A Interferon-induced heli 99.0 2.9E-10 9.8E-15 135.8 9.1 117 89-226 388-517 (699)
57 1gm5_A RECG; helicase, replica 99.0 7.6E-11 2.6E-15 142.9 3.3 107 102-225 578-695 (780)
58 4a2q_A RIG-I, retinoic acid in 99.0 3.8E-10 1.3E-14 137.5 9.2 124 85-229 616-751 (797)
59 1c4o_A DNA nucleotide excision 99.0 1.2E-09 4.1E-14 130.6 13.2 110 103-227 440-550 (664)
60 2d7d_A Uvrabc system protein B 99.0 8.6E-10 2.9E-14 131.8 11.3 110 103-227 446-556 (661)
61 1tf5_A Preprotein translocase 99.0 2.7E-09 9.2E-14 128.4 15.2 121 83-228 417-546 (844)
62 3jux_A Protein translocase sub 98.9 3.6E-09 1.2E-13 125.1 12.5 122 82-228 458-588 (822)
63 4a2w_A RIG-I, retinoic acid in 98.9 1.2E-09 4E-14 135.6 8.3 109 102-229 631-751 (936)
64 3d2n_A Muscleblind-like protei 98.9 7.2E-10 2.4E-14 97.3 3.5 53 560-614 6-65 (83)
65 2fsf_A Preprotein translocase 98.9 6.8E-09 2.3E-13 124.8 12.0 121 83-228 426-584 (853)
66 1nkt_A Preprotein translocase 98.8 1.4E-08 4.9E-13 122.3 11.7 120 83-227 445-617 (922)
67 3oiy_A Reverse gyrase helicase 98.8 7.6E-09 2.6E-13 115.7 8.7 100 103-225 253-363 (414)
68 2rpp_A Muscleblind-like protei 98.8 3.8E-09 1.3E-13 93.7 4.2 53 560-614 14-73 (89)
69 2fwr_A DNA repair protein RAD2 98.7 4.6E-09 1.6E-13 119.6 5.3 104 102-230 349-457 (472)
70 1gku_B Reverse gyrase, TOP-RG; 98.6 2.5E-08 8.4E-13 125.1 8.0 73 103-182 276-353 (1054)
71 2oca_A DAR protein, ATP-depend 98.6 2.7E-08 9.2E-13 114.4 7.2 118 85-226 334-454 (510)
72 3h1t_A Type I site-specific re 98.4 5.3E-07 1.8E-11 105.8 9.7 120 85-224 423-555 (590)
73 3dmq_A RNA polymerase-associat 98.4 7.2E-07 2.5E-11 111.0 10.6 107 102-227 503-615 (968)
74 4ddu_A Reverse gyrase; topoiso 98.3 6.7E-08 2.3E-12 121.5 -0.1 73 103-182 310-388 (1104)
75 1z5z_A Helicase of the SNF2/RA 98.1 1.2E-05 4E-10 85.8 10.5 124 83-229 97-226 (271)
76 1z63_A Helicase of the SNF2/RA 98.0 7.4E-06 2.5E-10 93.8 8.2 107 103-228 342-454 (500)
77 1z3i_X Similar to RAD54-like; 97.8 6.3E-05 2.2E-09 89.5 12.5 106 103-228 417-529 (644)
78 3mwy_W Chromo domain-containin 97.7 4.4E-05 1.5E-09 93.1 8.9 122 85-230 559-687 (800)
79 2d9n_A Cleavage and polyadenyl 97.4 7.3E-05 2.5E-09 64.5 3.7 46 552-598 25-74 (77)
80 2cqe_A KIAA1064 protein; CCCH 97.2 0.00018 6.2E-09 65.0 3.0 32 581-613 2-35 (98)
81 3u9g_A Zinc finger CCCH-type a 97.1 0.00018 6.2E-09 73.4 3.2 26 562-587 88-117 (229)
82 2rhk_C Cleavage and polyadenyl 97.1 0.00014 4.8E-09 62.0 2.0 32 583-615 9-40 (72)
83 2d9m_A Zinc finger CCCH-type d 96.6 0.00065 2.2E-08 56.9 1.6 27 561-587 18-44 (69)
84 1m9o_A Tristetraproline; Cys3H 96.5 0.0015 5E-08 56.0 3.2 29 588-616 10-38 (77)
85 2w00_A HSDR, R.ECOR124I; ATP-b 96.4 0.01 3.5E-07 74.1 11.4 49 151-218 647-695 (1038)
86 2rpp_A Muscleblind-like protei 96.2 0.0019 6.5E-08 57.2 2.5 40 576-616 3-43 (89)
87 2e5s_A Otthump00000018578; ZF- 96.1 0.0012 4E-08 59.7 0.7 40 576-616 6-46 (98)
88 2lhn_A Nuclear polyadenylated 94.9 0.0014 4.7E-08 56.8 0.0 45 560-613 6-50 (80)
89 3d2q_A Muscleblind-like protei 95.8 0.0041 1.4E-07 52.5 2.6 26 560-586 39-64 (70)
90 2ipc_A Preprotein translocase 95.7 0.028 9.7E-07 68.3 10.1 38 82-123 427-464 (997)
91 2fc6_A Nuclear, target of EGR1 95.4 0.0086 2.9E-07 46.5 3.0 27 589-615 19-45 (50)
92 2d9m_A Zinc finger CCCH-type d 95.4 0.0064 2.2E-07 50.9 2.4 25 589-614 19-43 (69)
93 2fc6_A Nuclear, target of EGR1 94.9 0.0095 3.2E-07 46.3 1.7 28 560-587 17-45 (50)
94 3d2n_A Muscleblind-like protei 94.8 0.014 4.9E-07 50.9 2.9 26 561-587 41-66 (83)
95 2vl7_A XPD; helicase, unknown 92.3 0.066 2.2E-06 62.1 3.6 128 85-223 370-518 (540)
96 2lhn_A Nuclear polyadenylated 91.4 0.026 8.9E-07 48.8 0.0 58 546-614 15-72 (80)
97 3u1l_A PRE-mRNA-splicing facto 91.0 0.052 1.8E-06 56.6 0.7 25 563-587 70-94 (240)
98 3u1l_A PRE-mRNA-splicing facto 89.3 0.078 2.7E-06 55.3 0.4 26 590-616 70-95 (240)
99 4a15_A XPD helicase, ATP-depen 83.3 1.9 6.7E-05 50.7 8.0 80 83-171 432-514 (620)
100 3u9g_A Zinc finger CCCH-type a 72.2 2.4 8.3E-05 43.3 3.6 43 562-617 73-119 (229)
101 3crv_A XPD/RAD3 related DNA he 64.6 24 0.0008 40.6 10.5 84 82-176 376-467 (551)
102 3hgt_A HDA1 complex subunit 3; 55.1 70 0.0024 34.5 11.3 123 83-229 110-239 (328)
103 2gxq_A Heat resistant RNA depe 42.1 25 0.00084 34.0 4.9 72 102-176 72-149 (207)
104 1t6n_A Probable ATP-dependent 31.1 1.2E+02 0.0041 29.4 8.0 72 103-176 83-163 (220)
105 1vec_A ATP-dependent RNA helic 30.5 81 0.0028 30.2 6.5 71 103-176 72-151 (206)
106 3v33_A Ribonuclease ZC3H12A; r 29.6 13 0.00044 38.1 0.4 23 562-586 191-213 (223)
107 3v33_A Ribonuclease ZC3H12A; r 28.3 12 0.00042 38.2 0.0 23 589-614 191-213 (223)
108 3oiy_A Reverse gyrase helicase 25.3 40 0.0014 36.5 3.5 60 102-161 64-125 (414)
109 3iuy_A Probable ATP-dependent 23.7 74 0.0025 31.2 4.9 72 102-176 94-172 (228)
110 3im1_A Protein SNU246, PRE-mRN 23.6 60 0.002 34.7 4.4 40 290-332 1-40 (328)
111 1gm5_A RECG; helicase, replica 23.5 64 0.0022 38.9 5.0 74 103-176 418-495 (780)
112 1wrb_A DJVLGB; RNA helicase, D 23.2 2E+02 0.0069 28.5 8.1 71 103-176 101-179 (253)
113 1qde_A EIF4A, translation init 22.9 72 0.0025 31.1 4.5 71 102-176 82-160 (224)
114 3fe2_A Probable ATP-dependent 22.9 79 0.0027 31.5 4.9 72 102-176 102-181 (242)
115 2oxc_A Probable ATP-dependent 22.5 1.2E+02 0.0042 29.8 6.2 56 102-161 92-150 (230)
116 3bor_A Human initiation factor 20.5 94 0.0032 30.8 4.9 73 102-176 98-178 (237)
117 3ber_A Probable ATP-dependent 20.3 1.6E+02 0.0054 29.6 6.6 56 103-161 112-169 (249)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.2e-63 Score=601.31 Aligned_cols=448 Identities=25% Similarity=0.317 Sum_probs=376.2
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.+.|++||++ ++++.++| +.|||+++|++. +..
T Consensus 246 ~SAT~~~~~l~~~~~~------~~vi~v~g----r~~pv~~~~~~~-----------------------~~~-------- 284 (773)
T 2xau_A 246 MSATLDAEKFQRYFND------APLLAVPG----RTYPVELYYTPE-----------------------FQR-------- 284 (773)
T ss_dssp EESCSCCHHHHHHTTS------CCEEECCC----CCCCEEEECCSS-----------------------CCS--------
T ss_pred EeccccHHHHHHHhcC------CCcccccC----cccceEEEEecC-----------------------Cch--------
Confidence 7999999999999974 68899998 789999988652 011
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC---------CCCCcEEEEecCCccHHHHHHHhhcc-
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKIC- 150 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~---------~~~~~~v~~Lhs~l~~~~~~~~~~~~- 150 (846)
+..+.++..+.+++..++ +|+||||+||.++++.++..|.. ....+.+.++||+|+.++|..+++.+
T Consensus 285 -~~~~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 285 -DYLDSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp -CHHHHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred -hHHHHHHHHHHHHHHhcC--CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 123344567778887755 57999999999999999888863 22468899999999999998888765
Q ss_pred -----CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeec
Q 003111 151 -----KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 225 (846)
Q Consensus 151 -----~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt 225 (846)
.|.+||||||||||+|||||+|+||||+|+.|.+.||+..+++.|.+.|+|++++.||+|||||..+|.||+||+
T Consensus 362 ~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~ 441 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 441 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSC
T ss_pred cccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEec
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-ccccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccc
Q 003111 226 KSFF-GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 304 (846)
Q Consensus 226 ~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT 304 (846)
++.| ..+.+++.|||+|.+|++++|.++.+| +++. ..++|++||+.++|.+|++.|..+||||++ | +||
T Consensus 442 ~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~--~~f~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT 511 (773)
T 2xau_A 442 EEAFQKELIEQSYPEILRSNLSSTVLELKKLG---IDDL--VHFDFMDPPAPETMMRALEELNYLACLDDE---G--NLT 511 (773)
T ss_dssp HHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCG--GGCCCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBC
T ss_pred HHHhcccccccCCCccccCcHHHHHHHHHHcC---CCCh--hhccccCCCcHHHHHHHHHHHHHcCCcccC---C--CcC
Confidence 9999 579999999999999999999998765 3333 345899999999999999999999999873 5 699
Q ss_pred cccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhh
Q 003111 305 FYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVI 384 (846)
Q Consensus 305 ~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~ 384 (846)
++|+.|+.||+||++||||+.+..++|++++++|||||++++ +|.+|.+++++++.++.+|.+++|| |
T Consensus 512 ~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~D-----------~ 579 (773)
T 2xau_A 512 PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDGD-----------H 579 (773)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTBH-----------H
T ss_pred hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCC-cccCChHHHHHHHHHHHhccCCCCc-----------H
Confidence 999999999999999999999999999999999999999876 9999999999899999899877765 9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 003111 385 MGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLG 464 (846)
Q Consensus 385 l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s 464 (846)
++.+|+|+.|.....+ .....+||++|||++++|+++.+++.||.++|.++++...+
T Consensus 580 ~~~l~~~~~~~~~~~~-----------------------~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~ 636 (773)
T 2xau_A 580 ITLLNVYHAFKSDEAY-----------------------EYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT 636 (773)
T ss_dssp HHHHHHHHHHTSHHHH-----------------------HHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhccc-----------------------cchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 9999999999753210 11126899999999999999999999999999998776543
Q ss_pred cCCCCC------------------------CC-CCCcch-----hh-hhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 465 TSNGLP------------------------TY-YDPYEF-----EH-TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 465 ~~~~~p------------------------~~-~~~~~~-----~h-~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
.....+ .. |..... .| ...+...++|++|++++.++ ++|+|.|++
T Consensus 637 ~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~----~~~~~~~~~ 712 (773)
T 2xau_A 637 TDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTS----KNYIRTVTS 712 (773)
T ss_dssp CCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESS----SEEEEEEEE
T ss_pred CCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccc----hhheeeccc
Confidence 210000 00 211000 11 11333458999999999988 899999998
Q ss_pred ----------cCccccccccchhHHHHHHHHHHhhhhh
Q 003111 514 ----------VPFVAPNQFQSNNVAEKLASIIKEIRVQ 541 (846)
Q Consensus 514 ----------~~Y~~~n~f~~~eaae~l~~iiKk~r~q 541 (846)
|+|+....+...++++.+..+.+++...
T Consensus 713 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (773)
T 2xau_A 713 VRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRL 750 (773)
T ss_dssp CCHHHHHHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHheeeccCCchhHHHHHHHHHHHhhhh
Confidence 9999999999999999999988887543
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=301.48 Aligned_cols=215 Identities=16% Similarity=0.240 Sum_probs=168.4
Q ss_pred CChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcccCcchhhHHhHh
Q 003111 261 SDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGI 340 (846)
Q Consensus 261 ~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA 340 (846)
|++..++..++|||+.++|.+|++.|..+||||++ | +||++|+.|++||+||++||||+.|..+||++|+++|||
T Consensus 2 g~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA 76 (270)
T 3i4u_A 2 GDRGPEFELGTRGSPMETLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVS 76 (270)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchhccccCCCCcCHHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 44544544449999999999999999999999973 6 699999999999999999999999999999999999999
Q ss_pred hhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhcc
Q 003111 341 LMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTA 420 (846)
Q Consensus 341 ~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~ 420 (846)
+||+++ ||.+|.++++++++++.+|.+++|| |++++|+|+.|++
T Consensus 77 ~Ls~~~-~f~~p~~~~~~a~~~~~~f~~~~sD-----------~ltlLn~~~~~~~------------------------ 120 (270)
T 3i4u_A 77 MLSVQN-VFYRPKDKQALADQKKAKFHQTEGD-----------HLTLLAVYNSWKN------------------------ 120 (270)
T ss_dssp HHTSSC-CBCCCGGGHHHHHHHHHTTCBTTBH-----------HHHHHHHHHHHHH------------------------
T ss_pred HHCCCc-cccCCchhHHHHHHHHHHccCCCCh-----------HHHHHHHHHHHHH------------------------
Confidence 999987 9999999999999999999887765 9999999999975
Q ss_pred ccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCC---------------------CCCCCCCcc--
Q 003111 421 SLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG---------------------LPTYYDPYE-- 477 (846)
Q Consensus 421 ~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~~~~---------------------~p~~~~~~~-- 477 (846)
.+..++||++|||++++|++|.++|+||.++|.+.++...+.... ...|+.-..
T Consensus 121 ---~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~ 197 (270)
T 3i4u_A 121 ---NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 197 (270)
T ss_dssp ---TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCC
T ss_pred ---cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCC
Confidence 233578999999999999999999999999999988754332110 011111100
Q ss_pred --hhh--hhhcccCCCCCCcchhhcccCCCCccccceecc----------cCcccccccc
Q 003111 478 --FEH--TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----------VPFVAPNQFQ 523 (846)
Q Consensus 478 --~~h--~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~----------~~Y~~~n~f~ 523 (846)
+.| +++++..++|++|++++.|+ |+|||+|++ |+|+...++.
T Consensus 198 ~v~iHPsS~L~~~~p~wvvy~Elv~Ts----k~y~r~vt~I~p~wL~~~ap~~~~~~~~~ 253 (270)
T 3i4u_A 198 VVYIHPSSALFNRQPEWVVYHELVLTT----KEYMREVTTIDPRWLVEFAPAFFKVLEVD 253 (270)
T ss_dssp EEEECTTSTTTTSCCSEEEEEEEEESS----SEEEEEEEECCHHHHHHHCTTTEECC---
T ss_pred EEEECchhhhcCCCCCEEEEEehhhhh----HhHHHhccccCHHHHHHHhHHHhcccccc
Confidence 011 23566779999999999999 999999998 8888766653
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=3e-31 Score=319.30 Aligned_cols=317 Identities=14% Similarity=0.062 Sum_probs=214.2
Q ss_pred CCCCcC-hHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCcccccc
Q 003111 1 MSATAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 79 (846)
Q Consensus 1 MSAT~d-~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i 79 (846)
||||++ ++.|++||+ ++++..++ |++|++..+..+.. ........|......... .
T Consensus 181 lSATl~n~~~~~~~l~-------~~~~~~~~----r~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~ 237 (715)
T 2va8_A 181 LSATISNYKQIAKWLG-------AEPVATNW----RPVPLIEGVIYPER---------KKKEYNVIFKDNTTKKVH---G 237 (715)
T ss_dssp EESCCTTHHHHHHHHT-------CEEEECCC----CSSCEEEEEEEECS---------STTEEEEEETTSCEEEEE---S
T ss_pred EcCCCCCHHHHHHHhC-------CCccCCCC----CCCCceEEEEecCC---------cccceeeecCcchhhhcc---c
Confidence 799986 999999996 56777766 77888876432100 000001112211100000 0
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCC-------------------------------
Q 003111 80 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF------------------------------- 128 (846)
Q Consensus 80 ~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~------------------------------- 128 (846)
... +.+++.+++.. +|.+|||+|++.+++.++..|......
T Consensus 238 ~~~----~~~~~~~~~~~----~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 238 DDA----IIAYTLDSLSK----NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SSH----HHHHHHHHHTT----TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chH----HHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 112 23444444432 478999999999999998887643211
Q ss_pred ---cEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhh
Q 003111 129 ---FKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 204 (846)
Q Consensus 129 ---~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkas 204 (846)
..+.++||+|+.++|..+++.+ .|.+|||||||++|+||+||++++|||+ ..+||++.+.. ..|+|.++
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~ 382 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIME 382 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHH
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHH
Confidence 2488999999999998888755 7899999999999999999999999997 45688766543 68999999
Q ss_pred HHhhcCCCCCCC---CCcEEEeecccc-ccccc---ccccchhhhhhhHH------HHHHHhhhhcc-cCCChhhhhc-c
Q 003111 205 AEQRRGRTGRTC---DGQVYRLVTKSF-FGTLE---DHECPAILRLSLRL------QVLLICCAESK-AISDPKVLLQ-K 269 (846)
Q Consensus 205 a~QR~GRaGR~~---~G~c~rLyt~~~-~~~l~---~~~~PEI~r~~L~~------~vL~lk~~~~~-~l~~~~~~l~-~ 269 (846)
+.||+|||||.+ +|.||+||++.. +..+. -...||+.+++|.. .+|.++.+|.. ...+...++. .
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~ 462 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYES 462 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTS
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhh
Confidence 999999999998 899999998865 32221 14678988887654 56666655421 1112222322 3
Q ss_pred ccC-CCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhccc---CcchhhHHhHhhhccC
Q 003111 270 ALD-PPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI---GMLREGILLGILMDTQ 345 (846)
Q Consensus 270 ~id-pP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~---gCl~e~l~IaA~Lsv~ 345 (846)
|+. +|+...+..|++.|.++|+|+.++ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|+|+.+.-
T Consensus 463 ~~~~~~~~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~ 540 (715)
T 2va8_A 463 LLAKQLVDVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDG 540 (715)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTS
T ss_pred HHHhhcchHHHHHHHHHHHHCcCEeecC--CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccc
Confidence 333 455677999999999999998731 3457999999999999999999999998887 7999999988877643
Q ss_pred CCcccCCCCchH
Q 003111 346 PLPILHPFGDDA 357 (846)
Q Consensus 346 ~~pf~~P~~~~~ 357 (846)
+.++.+|.+.+.
T Consensus 541 ~~~~~r~~e~~~ 552 (715)
T 2va8_A 541 PLVSVGRNEEEE 552 (715)
T ss_dssp CCCCCCHHHHHH
T ss_pred ccCccChHHHHH
Confidence 345666654443
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=1.4e-28 Score=295.57 Aligned_cols=302 Identities=15% Similarity=0.139 Sum_probs=218.6
Q ss_pred CCCCcC-hHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCcccccc
Q 003111 1 MSATAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 79 (846)
Q Consensus 1 MSAT~d-~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i 79 (846)
||||++ ++.|++||+ ++++..++ +.+|++..+..+ .. ..|...... ....+
T Consensus 178 lSATl~n~~~~~~~l~-------~~~~~~~~----r~~~l~~~~~~~------------~~---~~~~~~~~~--~~~~~ 229 (702)
T 2p6r_A 178 LSATAPNVTEIAEWLD-------ADYYVSDW----RPVPLVEGVLCE------------GT---LELFDGAFS--TSRRV 229 (702)
T ss_dssp EECCCTTHHHHHHHTT-------CEEEECCC----CSSCEEEEEECS------------SE---EEEEETTEE--EEEEC
T ss_pred ECCCcCCHHHHHHHhC-------CCcccCCC----CCccceEEEeeC------------Ce---eeccCcchh--hhhhh
Confidence 799987 899999996 56777776 778888764311 00 000000000 00011
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC----------------------------CcEE
Q 003111 80 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------FFKV 131 (846)
Q Consensus 80 ~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~----------------------------~~~v 131 (846)
. .. +++.+++.. +|.+|||+|+..+++.++..|..... ...+
T Consensus 230 ~--~~----~~~~~~~~~----~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 230 K--FE----ELVEECVAE----NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp C--HH----HHHHHHHHT----TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred h--HH----HHHHHHHhc----CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 0 22 334444432 36899999999999988877643100 1247
Q ss_pred EEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcC
Q 003111 132 HILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 210 (846)
Q Consensus 132 ~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~G 210 (846)
.++||+|+.++|..+++.+ .|.+|||||||++|+||+||++.+|||+ ..+|| +. ..|+|.+++.||+|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAG 368 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhh
Confidence 7899999999998888755 7899999999999999999999999997 46677 21 68999999999999
Q ss_pred CCCCCC---CCcEEEeecccccccccc---cccchhhhhhhHH------HHHHHhhhhcc-cCCChhhhhc-ccc----C
Q 003111 211 RTGRTC---DGQVYRLVTKSFFGTLED---HECPAILRLSLRL------QVLLICCAESK-AISDPKVLLQ-KAL----D 272 (846)
Q Consensus 211 RaGR~~---~G~c~rLyt~~~~~~l~~---~~~PEI~r~~L~~------~vL~lk~~~~~-~l~~~~~~l~-~~i----d 272 (846)
||||.+ +|.||+|+++..++.+.+ ...||+.+++|.. .+|.+...|.. ...+...++. .|+ +
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~ 448 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE 448 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC
T ss_pred hcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh
Confidence 999988 799999999987554322 5678998887654 55555544411 1111122211 222 3
Q ss_pred CCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhccc--CcchhhHHhHhhhccCCCccc
Q 003111 273 PPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI--GMLREGILLGILMDTQPLPIL 350 (846)
Q Consensus 273 pP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~--gCl~e~l~IaA~Lsv~~~pf~ 350 (846)
+|..+.+..|++.|..+|+|+.+ +.+.+|++|+.|+.+|++|+.+++++.+... .|..+++.|+|+.+.-+..+.
T Consensus 449 ~~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~ 525 (702)
T 2p6r_A 449 ISLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTV 525 (702)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCC
Confidence 78889999999999999999873 4468999999999999999999999999888 899899998888765444667
Q ss_pred CCCC
Q 003111 351 HPFG 354 (846)
Q Consensus 351 ~P~~ 354 (846)
++.+
T Consensus 526 r~~e 529 (702)
T 2p6r_A 526 RKTD 529 (702)
T ss_dssp CTTT
T ss_pred CCch
Confidence 7766
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=6.1e-26 Score=273.50 Aligned_cols=306 Identities=14% Similarity=0.083 Sum_probs=211.2
Q ss_pred CCCCc-ChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCcccccc
Q 003111 1 MSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 79 (846)
Q Consensus 1 MSAT~-d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i 79 (846)
||||+ +++.|++||+ ++++..++ +++|++..+..+. ...|..... ...
T Consensus 175 lSATl~n~~~~~~~l~-------~~~~~~~~----rp~~l~~~~~~~~---------------~~~~~~~~~-~~~---- 223 (720)
T 2zj8_A 175 LSATIGNPEELAEWLN-------AELIVSDW----RPVKLRRGVFYQG---------------FVTWEDGSI-DRF---- 223 (720)
T ss_dssp EECCCSCHHHHHHHTT-------EEEEECCC----CSSEEEEEEEETT---------------EEEETTSCE-EEC----
T ss_pred EcCCcCCHHHHHHHhC-------CcccCCCC----CCCcceEEEEeCC---------------eeeccccch-hhh----
Confidence 79998 6899999996 45666665 6778776532110 000111000 000
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC-------------------------------C
Q 003111 80 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------F 128 (846)
Q Consensus 80 ~~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~-------------------------------~ 128 (846)
...+ +++.+++.. +|.+|||+|+..+++.++..|..... .
T Consensus 224 -~~~~----~~~~~~~~~----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 224 -SSWE----ELVYDAIRK----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp -SSTT----HHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred -hHHH----HHHHHHHhC----CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 0112 334444432 36899999999999988877753210 1
Q ss_pred cEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHh
Q 003111 129 FKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 207 (846)
Q Consensus 129 ~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~Q 207 (846)
..+.++||+|+.++|..+++.+ .|.++|||||+++|+||+||++++|||.+ .+|| ..| ..|+|.+++.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Q 364 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQ 364 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHH
Confidence 2489999999999998887765 78899999999999999999999999965 4566 222 36899999999
Q ss_pred hcCCCCCCC---CCcEEEeecccccc----cccccccchhhhh-----hhHHHHHHHhhhhcc-cCCChhhhh-cccc--
Q 003111 208 RRGRTGRTC---DGQVYRLVTKSFFG----TLEDHECPAILRL-----SLRLQVLLICCAESK-AISDPKVLL-QKAL-- 271 (846)
Q Consensus 208 R~GRaGR~~---~G~c~rLyt~~~~~----~l~~~~~PEI~r~-----~L~~~vL~lk~~~~~-~l~~~~~~l-~~~i-- 271 (846)
|+|||||.+ +|.||+|+++..+. .+.....+++... .|...++.+...+.. ...+...++ +.|+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999987 69999999987632 2333333443322 455556655544311 111122221 2232
Q ss_pred ----CCCChhhHHHHHHHHHhcCCcc-cCCCCCCcccccccceecccccchhHHHHHHHhccc----CcchhhHHhHhhh
Q 003111 272 ----DPPYPEVVGDALDLLDHKRALQ-KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI----GMLREGILLGILM 342 (846)
Q Consensus 272 ----dpP~~~~I~~Al~~L~~LgALd-~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~----gCl~e~l~IaA~L 342 (846)
++|..+.+..|++.|...|+|+ .. .+.+.+|++|+.|+.+|+||..+++++.+... +|..+++.|+|++
T Consensus 445 ~~~~~~~~~~~~~~~l~~L~~~~~i~~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 522 (720)
T 2zj8_A 445 QRKDTYSLEEKIRNILYFLLENEFIEISL--EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLT 522 (720)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHTTSEEECT--TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeECC--CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccC
Confidence 2333468999999999999998 52 14567999999999999999999999998877 8999999999998
Q ss_pred ccCCCcccCCCCchHH
Q 003111 343 DTQPLPILHPFGDDAL 358 (846)
Q Consensus 343 sv~~~pf~~P~~~~~~ 358 (846)
+.-+..+.+|.+.+..
T Consensus 523 ~e~~~i~~r~~e~~~l 538 (720)
T 2zj8_A 523 PDITPFNYSKREFERL 538 (720)
T ss_dssp TTCCCCCCCHHHHHHH
T ss_pred ccccccccCHHHHHHH
Confidence 7544466666554443
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.84 E-value=5.4e-21 Score=197.01 Aligned_cols=175 Identities=20% Similarity=0.205 Sum_probs=141.5
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
++.+++...+ ++.+|||+++..+++.+...|...+ +.+.++||+|+.+++..+++.+ .|..+|+||||+|++|++
T Consensus 21 ~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 96 (212)
T 3eaq_A 21 VLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLD 96 (212)
T ss_dssp HHHHHHHHHC--CSCEEEECSSHHHHHHHHHHHHHHT--CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSS
T ss_pred HHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCC
Confidence 4444444443 4689999999999999999887654 7899999999999988887655 788999999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc--------------ccccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF--------------FGTLE 233 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~--------------~~~l~ 233 (846)
||+|.+||+.+. |.|.++..||.||+||.+ +|.|+.||+... +..+.
T Consensus 97 i~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 97 IPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred CccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 999999998654 347899999999999996 799999999876 55677
Q ss_pred ccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHH
Q 003111 234 DHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLL 286 (846)
Q Consensus 234 ~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L 286 (846)
....|||.+..+..+++.++.+.......-..+...++++|+++.+..|+..|
T Consensus 159 ~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 159 PPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 78899999999999999987544222222233445778999999999998766
No 7
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=1.7e-20 Score=203.72 Aligned_cols=180 Identities=20% Similarity=0.190 Sum_probs=142.5
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
++.+++.... ++.+|||+++..+++.+...|...+ +.+.+|||+|+++++..+++.+ .|.++|+||||+||+|++
T Consensus 18 ~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g--~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gid 93 (300)
T 3i32_A 18 VLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLD 93 (300)
T ss_dssp HHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTT--CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTT
T ss_pred HHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCcc
Confidence 3444444443 4789999999999999999997654 7899999999999988887655 678999999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc--------------ccccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF--------------FGTLE 233 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~--------------~~~l~ 233 (846)
||+|.+||+.++ +.|.++..||+|||||.+ +|.||.||+... +..+.
T Consensus 94 i~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 94 IPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp CCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECC
T ss_pred ccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeC
Confidence 999999998664 236788999999999996 799999999876 55677
Q ss_pred ccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCC
Q 003111 234 DHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRA 291 (846)
Q Consensus 234 ~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgA 291 (846)
..+.|||++.++..+++.++.++...+..-..+..+++++|+++.+..|+..|.....
T Consensus 156 ~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 156 PPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 8889999999999999998654322222222333467888999999999999976655
No 8
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.65 E-value=7.2e-17 Score=192.62 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=128.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc---CCCeEEEEecCCCccccCCCCeEEEEeC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC---KSHRKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~---~~~rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
+|+| ||+++..+++.++..|... .+.+.++||+|+++++..+.+.+ +|.++||||||++|+||+| +|++|||.
T Consensus 321 ~g~i-If~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 321 PGDC-IVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp TTEE-EECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred CCCE-EEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 3555 5566688999999999764 37899999999999776665544 3889999999999999999 99999999
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC----CCcEEEeeccc--ccccccccccchhhhhhhHHHHHHH
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS--FFGTLEDHECPAILRLSLRLQVLLI 252 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~----~G~c~rLyt~~--~~~~l~~~~~PEI~r~~L~~~vL~l 252 (846)
|..|. .||+..+. ...|+|.+++.||+|||||.+ +|.||++++++ .+..+.....|+|.+.+|....+++
T Consensus 397 ~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l 472 (677)
T 3rc3_A 397 SLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI 472 (677)
T ss_dssp CSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHH
T ss_pred Ccccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHH
Confidence 99987 78887443 367999999999999999998 58999999987 5667888999999998888888877
Q ss_pred hhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCccc
Q 003111 253 CCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQK 294 (846)
Q Consensus 253 k~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~ 294 (846)
+.++.. ++...+...++.+..++.+|.
T Consensus 473 ~~~~~~---------------l~~~~l~ell~~l~~~~~vd~ 499 (677)
T 3rc3_A 473 EMFAYH---------------LPDATLSNLIDIFVDFSQVDG 499 (677)
T ss_dssp HHHHHH---------------STTSCHHHHHHHHHHHCBCCT
T ss_pred HHHhcc---------------CCcchHHHHHHHHHHhhcccc
Confidence 654310 122345666777777777664
No 9
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.60 E-value=1.3e-15 Score=174.02 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=100.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK-ICKSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.|.+|||+|+.++++.+...|...+ +.+..||+.+.. .+++ ...|..+|+|||+++|+||+||+ .+|||+|+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g--~~~~~lh~~~~~----~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSRKTFD----TEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT--CCEEEECTTTHH----HHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC--CeEEECCHHHHH----HHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCC
Confidence 3689999999999999999997754 788899998642 3333 34788999999999999999999 99999999
Q ss_pred cceeeecCCCCccccee---eecCHhhHHhhcCCCCCCC--CCcEEEeecc
Q 003111 181 SLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~---~~ISkasa~QR~GRaGR~~--~G~c~rLyt~ 226 (846)
.+...|| ..+...+.. .|.|.+++.||+|||||.+ +|.||.++..
T Consensus 261 ~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 261 CLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999998 556666666 9999999999999999998 6899888654
No 10
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.56 E-value=1.9e-15 Score=173.01 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=95.8
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|.+|||+|+..+++.+...|...+ +.+..|||. ++..++..+ .|..+||||||++|+||+||+ .+|||+|+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g--~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG--KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC--CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCc
Confidence 3689999999999999999997653 788999995 344444443 688999999999999999999 99999998
Q ss_pred cceeeecCCCCccccee---eecCHhhHHhhcCCCCCCC--CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~---~~ISkasa~QR~GRaGR~~--~G~c~rLyt~~ 227 (846)
.+...|+. .+...+.. .|+|++++.||+|||||.+ +|.||.+++..
T Consensus 263 ~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 88877763 33444444 8999999999999999987 79999999886
No 11
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.53 E-value=6.9e-15 Score=174.36 Aligned_cols=118 Identities=23% Similarity=0.188 Sum_probs=101.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+|.+|||+++.++++.+.+.|...+ +.+..+||+|+++++ +++.++|+||||+||+||+|| |++|||+|+.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g--~~v~~lHG~l~q~er------~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLG--INAVAYYRGLDVSVI------PTIGDVVVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECTTSCGGGS------CSSSCEEEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCC--CcEEEecCCCCHHHH------HhCCCcEEEECChHHccCCCC-CcEEEecCcc
Confidence 4789999999999999999998754 789999999987642 346679999999999999997 9999999998
Q ss_pred ceee----ecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecccccc
Q 003111 182 LQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 230 (846)
Q Consensus 182 k~~~----yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~~ 230 (846)
+..+ |||..++.. ...|+|.+++.||+||+||.++|. |.||++.+..
T Consensus 467 ~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred ccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 8776 455566544 468999999999999999988899 9999987654
No 12
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.50 E-value=4.1e-14 Score=183.78 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=153.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC-----------------------------------CCCcEEEEecCCccHHHHHHH
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL-----------------------------------SSFFKVHILHSSVDTEQALMA 146 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~-----------------------------------~~~~~v~~Lhs~l~~~~~~~~ 146 (846)
++.+|||++++.+.+++++.|... .-...|-..||+|+.+++..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 468999999988777666554210 001236778999999999888
Q ss_pred hhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEE
Q 003111 147 MKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYR 222 (846)
Q Consensus 147 ~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~r 222 (846)
.+.+ .|..||++||+.++.||++|.+++||.. ..+||+..+. ..++|.++..||.|||||.+ .|.++-
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred HHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 7766 7889999999999999999999999943 3568887663 46899999999999999976 599999
Q ss_pred eeccccc---ccccccccc--hhhhhhhHHHHHHHhhhhcccCCChh---hhh-------------------------cc
Q 003111 223 LVTKSFF---GTLEDHECP--AILRLSLRLQVLLICCAESKAISDPK---VLL-------------------------QK 269 (846)
Q Consensus 223 Lyt~~~~---~~l~~~~~P--EI~r~~L~~~vL~lk~~~~~~l~~~~---~~l-------------------------~~ 269 (846)
+.++... ..+-..+.| .-+...|.+.++.-..+| .+.+.. .++ .+
T Consensus 469 ~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g--~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~ 546 (1724)
T 4f92_B 469 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG--NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDP 546 (1724)
T ss_dssp EEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHT--SCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCT
T ss_pred EecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHh--hcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccch
Confidence 9887542 222111111 001112222222211111 011110 000 00
Q ss_pred ccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcccCcch-hhHHhHhhh
Q 003111 270 ALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLR-EGILLGILM 342 (846)
Q Consensus 270 ~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~-e~l~IaA~L 342 (846)
.++..-.+.+..|+..|.+.|.|..+...|.+..|++|+.|+++.++|.-.+.+.....-.+.+ +++.+.|+.
T Consensus 547 ~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s 620 (1724)
T 4f92_B 547 LLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLS 620 (1724)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCC
Confidence 1111123457889999999999964222366789999999999999999999988776655544 444444443
No 13
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.47 E-value=4.8e-14 Score=175.35 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=93.8
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCC-------------------------------------CcEEEEecCCccHHHHH
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSS-------------------------------------FFKVHILHSSVDTEQAL 144 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~-------------------------------------~~~v~~Lhs~l~~~~~~ 144 (846)
.+.+|||+++..+++.++..|...+- ...+.++||+|++.++.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 36899999999999999988865321 11478999999999988
Q ss_pred HHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcE
Q 003111 145 MAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQV 220 (846)
Q Consensus 145 ~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c 220 (846)
.++..+ .|..+|||||++++.||++|+ ++||..+..+ ||.. ...|+|.+++.||+|||||.+ .|.|
T Consensus 416 ~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp HHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred HHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEE
Confidence 887665 788999999999999999999 5555555543 5644 245999999999999999976 6999
Q ss_pred EEeecc
Q 003111 221 YRLVTK 226 (846)
Q Consensus 221 ~rLyt~ 226 (846)
|.++..
T Consensus 486 i~l~~~ 491 (997)
T 4a4z_A 486 IVMAYN 491 (997)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 999854
No 14
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.44 E-value=3.1e-13 Score=133.06 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=89.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++.++++.+...|...+ +.+..+||+|+..++..+++.+ .+..+|+|||++++.|+++|++.+||+.+.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC
Confidence 3679999999999999999987643 7789999999999988777655 678899999999999999999999998543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
|.|.++..||.||+||.+ +|.|+.++++..
T Consensus 108 ------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 108 ------------------PANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp ------------------CSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred ------------------CCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 336778899999999985 699999998754
No 15
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.7e-13 Score=170.15 Aligned_cols=129 Identities=25% Similarity=0.296 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC-------------------------------------Cc
Q 003111 87 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------------FF 129 (846)
Q Consensus 87 i~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~-------------------------------------~~ 129 (846)
+..++..+.... .+.+|||+++..+++.++..|...+. ..
T Consensus 429 l~~li~~l~~~~---~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 429 IYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcC---CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 334444444432 36799999999999999988854210 01
Q ss_pred EEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhh
Q 003111 130 KVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 208 (846)
Q Consensus 130 ~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR 208 (846)
.|..+||+|++.++..++..+ .|..+|||||+++++||+||++.+||+... .||.. ...|+|.+++.||
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr 575 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQM 575 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHH
T ss_pred CeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHh
Confidence 188999999999998887765 788999999999999999999999997532 34443 3569999999999
Q ss_pred cCCCCCCC---CCcEEEeecccc
Q 003111 209 RGRTGRTC---DGQVYRLVTKSF 228 (846)
Q Consensus 209 ~GRaGR~~---~G~c~rLyt~~~ 228 (846)
+|||||.+ .|.||.++++..
T Consensus 576 ~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 576 SGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp HHHSCCSSSCSSEEEEEEECCCC
T ss_pred hcccCCCCCCCceEEEEEecCCc
Confidence 99999998 799999998763
No 16
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.43 E-value=2.6e-13 Score=176.23 Aligned_cols=226 Identities=14% Similarity=0.128 Sum_probs=152.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcC------C-------------------C-------CCcEEEEecCCccHHHHHHHhhc
Q 003111 102 EKSILVFLPTYYALEQQWHLMKP------L-------------------S-------SFFKVHILHSSVDTEQALMAMKI 149 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~------~-------------------~-------~~~~v~~Lhs~l~~~~~~~~~~~ 149 (846)
.+.+|||+|++.+.+..+..|.. . . -...|..+||+|+++++..+.+.
T Consensus 1155 ~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~l 1234 (1724)
T 4f92_B 1155 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQL 1234 (1724)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHH
Confidence 46799999999988776554411 0 0 01247889999999999988776
Q ss_pred c-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeec
Q 003111 150 C-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVT 225 (846)
Q Consensus 150 ~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt 225 (846)
+ .|..+|++||+.++.||++|.+.+||.. ...||.... ...+.|-.+..||+|||||.+ .|.|+-++.
T Consensus 1235 F~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1235 FSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 6 7889999999999999999999999964 245776543 446889999999999999987 599999987
Q ss_pred ccc---cccccccccchhhhhhh----HHHHHHHhhhhcccCCChh---hhhc----------------------cccCC
Q 003111 226 KSF---FGTLEDHECPAILRLSL----RLQVLLICCAESKAISDPK---VLLQ----------------------KALDP 273 (846)
Q Consensus 226 ~~~---~~~l~~~~~PEI~r~~L----~~~vL~lk~~~~~~l~~~~---~~l~----------------------~~idp 273 (846)
... |..+-.. |+...+.| ...++.....+ .+.+.. .++. ..++.
T Consensus 1307 ~~~~~~~~~ll~~--~~pveS~L~~~l~~~l~~eI~~~--~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~ 1382 (1724)
T 4f92_B 1307 GSKKDFFKKFLYE--PLPVESHLDHCMHDHFNAEIVTK--TIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSD 1382 (1724)
T ss_dssp GGGHHHHHHHTTS--CBCCCCCGGGSCHHHHHHHHHTT--SCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHH
T ss_pred chHHHHHHHHhCC--CCceeeecccchHHHHHHHHHhc--ccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHH
Confidence 753 2332211 22223332 22333222211 111111 1110 00111
Q ss_pred CChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccchhHHHHHHHhcccCcchh-hHHhHh
Q 003111 274 PYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLRE-GILLGI 340 (846)
Q Consensus 274 P~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl~e-~l~IaA 340 (846)
.-.+.++.+++.|.+.|+|.. +.++.+..|++|+.|+.+.++|.-++++..+..-++..+ .+-+.+
T Consensus 1383 ~l~~lv~~~l~~L~~~~~I~~-~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~ 1449 (1724)
T 4f92_B 1383 HLSELVEQTLSDLEQSKCISI-EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS 1449 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSEEE-ETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEE-cCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhc
Confidence 223557889999999999964 222556789999999999999999999988766665443 333433
No 17
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=8.6e-13 Score=131.11 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccC
Q 003111 90 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVT 168 (846)
Q Consensus 90 li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiT 168 (846)
.+..+....+ ++.+|||+++..+++.+...|...+ +.+..+||+|+..++..+++.+ .|..+|+|||++++.|++
T Consensus 24 ~L~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid 99 (175)
T 2rb4_A 24 ALCNIYGSIT--IGQAIIFCQTRRNAKWLTVEMIQDG--HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGID 99 (175)
T ss_dssp HHHHHHTTSC--CSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTC
T ss_pred HHHHHHHhCC--CCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCC
Confidence 4444554443 4689999999999999999997654 7899999999999988777655 678899999999999999
Q ss_pred CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 169 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 169 Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+|++.+||+.+.. +++ ....|..+..||.||+||.+ +|.|+.|++...
T Consensus 100 ~~~~~~Vi~~d~p----~~~--------~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 100 VKQVTIVVNFDLP----VKQ--------GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CTTEEEEEESSCC----C----------CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred cccCCEEEEeCCC----CCc--------cccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 9999999975432 111 11258899999999999975 699999998754
No 18
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.41 E-value=8.1e-13 Score=129.88 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=92.4
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.+...|...+ +.+..+||+|+..++..+++.+ .+..+|+|||++++.|+++|++.+||+.+.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG--YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL 112 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC
Confidence 3579999999999999999987654 7899999999999988777655 678899999999999999999999997432
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
|.|..+..||.||+||.+ +|.|+.+++...
T Consensus 113 ------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 113 ------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp ------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred ------------------CCCHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 347889999999999985 699999998753
No 19
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.39 E-value=2.7e-13 Score=154.44 Aligned_cols=116 Identities=28% Similarity=0.336 Sum_probs=94.5
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+|+.++++.++..|...+ +.+..+||. ++..+++.+ .|..+|+|||+++|.||+|| |.+|||+|+.
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~~--~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKAG--KSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTT--CCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcC--CCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcc
Confidence 679999999999999999997653 789999994 333444433 67889999999999999999 9999999999
Q ss_pred ceeee-cCCCCcccceeeecCHhhHHhhcCCCCCC--CCCcEEEeec
Q 003111 182 LQVFW-DVNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 225 (846)
Q Consensus 182 k~~~y-d~~~~~~~l~~~~ISkasa~QR~GRaGR~--~~G~c~rLyt 225 (846)
+.++| +...++......|.|.+++.||+||+||. .+|.||.||+
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 88776 44455666667899999999999999996 4799999985
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.38 E-value=1.6e-13 Score=163.85 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEe--------cCCccHHHHHHHhhcc-C-
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS--SFFKVHIL--------HSSVDTEQALMAMKIC-K- 151 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~L--------hs~l~~~~~~~~~~~~-~- 151 (846)
.+.+.+++.......+ ++.+|||+++..+++.+...|...+ ..+.+..+ ||+|+.++|..+++.+ .
T Consensus 382 ~~~L~~ll~~~~~~~~--~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 382 LEDLCFILQEEYHLNP--ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHTTCT--TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHhccCC--CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 3445555554443333 4689999999999999999987542 23667777 6699999988888766 4
Q ss_pred CCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc--
Q 003111 152 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF-- 229 (846)
Q Consensus 152 ~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~-- 229 (846)
|..+|+|||++||+||+||+|.+||+ ||+.. |..+..||+|| ||..+|.|+.|+++.+.
T Consensus 460 g~~~vLVaT~v~~~GiDip~v~~VI~--------~d~p~----------s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 460 GDHNILIATSVADEGIDIAQCNLVIL--------YEYVG----------NVIKMIQTRGR-GRARGSKCFLLTSNAGVIE 520 (696)
T ss_dssp -CCSCSEEEESSCCC---CCCSEEEE--------ESCC------------CCCC----------CCCEEEEEESCHHHHH
T ss_pred CCccEEEEechhhcCCcCccCCEEEE--------eCCCC----------CHHHHHHhhcc-CcCCCceEEEEecCCCHHH
Confidence 78999999999999999999999997 55533 34456799999 99999999999998766
Q ss_pred --------ccccccccchhhhhhhHHHHHHHh
Q 003111 230 --------GTLEDHECPAILRLSLRLQVLLIC 253 (846)
Q Consensus 230 --------~~l~~~~~PEI~r~~L~~~vL~lk 253 (846)
+.+.+...||+.+.+++.+++.++
T Consensus 521 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~ 552 (696)
T 2ykg_A 521 KEQINMYKEKMMNDSILRLQTWDEAVFREKIL 552 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 445667777887777777666654
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=149.50 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+.+..+....+ .+.+|||+++.++++.+.+.|...+ +.+..+||+++.+++..+++.+ .+..+|+|||+++|.|+
T Consensus 269 ~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 269 DTLCDLYETLT--ITQAVIFINTRRKVDWLTEKMHARD--FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp HHHHHHHHSSC--CSSCEEECSCHHHHHHHHHHHHTTT--CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred HHHHHHHHhCC--CCcEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 44555555544 4689999999999999999997654 7789999999999988877655 67889999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
+||+|.+||+.+. +.|.++..||+|||||.+ +|.||.+|++...
T Consensus 345 dip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 345 DVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp CGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred CccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 9999999998543 347789999999999985 6999999998654
No 22
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.38 E-value=4.5e-13 Score=158.84 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=99.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhc-cCCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI-CKSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~-~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++.++++.+++.|...+ +.+..+||. ++..+++. ..|..+||||||+||+||+|| |.+|||+|+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g--~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC--CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcc
Confidence 3689999999999999999997654 778999985 34444443 367899999999999999997 999999999
Q ss_pred cceeee--cCCCCcccceeeecCHhhHHhhcCCCCCCC--CCcEEEeecc
Q 003111 181 SLQVFW--DVNRKIDSAELVWVSQSQAEQRRGRTGRTC--DGQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~y--d~~~~~~~l~~~~ISkasa~QR~GRaGR~~--~G~c~rLyt~ 226 (846)
.+.+++ +.+.++......|+|.+++.||+||+||.+ +|.||.|+++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 877665 455556667778999999999999999995 7999999984
No 23
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=116.29 Aligned_cols=60 Identities=25% Similarity=0.658 Sum_probs=52.4
Q ss_pred CCCccccccccccccCcCCCCCCCCccccCC-CCCcccccccccCCCCCCCCCCCCCCCCCC
Q 003111 557 SETPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDLGQP 617 (846)
Q Consensus 557 ~~~~~k~~~C~~f~~G~C~~G~~C~FsH~~~-~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 617 (846)
....+++++|+||++|.|++|++|+|+|+.. .+.++|+||++.|.|. |++|+|.|..+..
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccc
Confidence 3446789999999999999999999999985 4567899999989999 8999999987643
No 24
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=130.38 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=78.9
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.+...|...+ +.+..+||+++..++..+++.+ .|..+|+|||++++.|+++|++.+||+.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~-- 121 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF-- 121 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTT--CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEES--
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcC--CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEe--
Confidence 4679999999999999999987653 7899999999998887776654 5778999999999999999999999973
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|+ |.|..+..||.||+||.+ +|.|+.++++...
T Consensus 122 ------d~----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 122 ------DL----------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp ------SC----------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred ------CC----------CCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 33 237888999999999986 6999999997643
No 25
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.32 E-value=1.8e-12 Score=154.89 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=99.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+|+.++++.++..|... .+.+..+||. ++..+++.+ .|..+|+|||+++|+||+|| |.+|||+|.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 468999999999999999999876 4789999994 455555544 68899999999999999999 999999997
Q ss_pred cce--eeecCCCCcccceeeecCHhhHHhhcCCCCCC--CCCcEEEeec
Q 003111 181 SLQ--VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 225 (846)
Q Consensus 181 ~k~--~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~--~~G~c~rLyt 225 (846)
... ..||...+...+...|+|.+++.||+||+||. .+|.||.++.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 654 44787767666677899999999999999998 4799999985
No 26
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.32 E-value=1.6e-12 Score=147.56 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|.+|||+|+.++++.+++.|... .+.+..+||.. +..+++.+ .|..+|+|||+++|.||+|| +.+|||+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~----r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKT----FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTT----HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCcc----HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCc
Confidence 468999999999999999999765 47899999983 33344433 67889999999999999999 999999999
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeec
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVT 225 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt 225 (846)
.+.++|| ..++......|.|.++..||+||+||.+. +.|+.+|.
T Consensus 244 ~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 244 TIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999 66666677789999999999999999874 44555654
No 27
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.32 E-value=3.8e-12 Score=141.09 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=93.5
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++.++++.+...|...+ +.+..+||+++.+++..+++.+ .+..+|+|||+++|.|++||++.+||+.+.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG--YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 4689999999999999999987643 6789999999999988777655 678899999999999999999999997442
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
+.|.++..||+|||||.+ +|.|+.||++.+.
T Consensus 336 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 336 ------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp ------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred ------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 347889999999999985 7999999998654
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.32 E-value=3.6e-12 Score=141.27 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=94.5
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||+++|.|++||++.+||+.+.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG--HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECC
Confidence 3679999999999999999997654 6789999999999988887655 678899999999999999999999998665
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
..... .+.|.++..||+|||||.+ +|.|+.+++..
T Consensus 344 p~~~~------------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 344 PVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp CBCSS------------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CCCCC------------CCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 32221 1357899999999999976 49999999864
No 29
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=142.40 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=92.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++.++++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||+++|+|++||+|.+||+.+.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~ 353 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 353 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCC--CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC
Confidence 4679999999999999999997654 7899999999999988777655 577899999999999999999999998543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
|.|..+..||+||+||.+ +|.|+.+|++....
T Consensus 354 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 354 ------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp ------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred ------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 347889999999999985 59999999986653
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.31 E-value=7.7e-12 Score=145.48 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=94.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.++..|...+ +.+..+||+|+.+++..+.+.+ .+..+|||||++++.||++|+|++||..+.
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSKG--ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC
Confidence 3579999999999999999997654 7899999999999988887665 678899999999999999999999997543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|-|.++..||+|||||.+ +|.|+.+|+.++.
T Consensus 314 ------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 314 ------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp ------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred ------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 337889999999999987 6999999988654
No 31
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.31 E-value=4.2e-13 Score=114.94 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=50.5
Q ss_pred ccccccccccccCcCCCCCCCCccccCC-CCCcccccccccCCCCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDLGQP 617 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~-~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 617 (846)
..+.++|+||++|.|++|++|+|+|+.. .+.++|+||++.|.|.+ ++|+|.|..++.
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 5688999999999999999999999975 55779999998899999 899999986653
No 32
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.30 E-value=5.5e-12 Score=138.60 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=99.9
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCcccc
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSV 167 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsi 167 (846)
+.+..+....+ .+.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||+++|.|+
T Consensus 232 ~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 307 (395)
T 3pey_A 232 DVLTELYGLMT--IGSSIIFVATKKTANVLYGKLKSEG--HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGI 307 (395)
T ss_dssp HHHHHHHTTTT--SSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSC
T ss_pred HHHHHHHHhcc--CCCEEEEeCCHHHHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCC
Confidence 34444444433 4689999999999999999997654 6789999999999988877655 67889999999999999
Q ss_pred CCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-CcEEEeeccc
Q 003111 168 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-GQVYRLVTKS 227 (846)
Q Consensus 168 TIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G~c~rLyt~~ 227 (846)
+||++.+||+.+..+ +...++|.++..||+|||||.+. |.|+.+++..
T Consensus 308 dip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 308 DIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp CCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 999999999855321 22246799999999999999865 9999999864
No 33
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.30 E-value=5.2e-12 Score=125.51 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=95.0
Q ss_pred HHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCC
Q 003111 91 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTI 169 (846)
Q Consensus 91 i~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTI 169 (846)
+.++.+..+ ++.+|||+++..+++.+...|...+ +.+..+||+|+..++..+++.+ .+..+|+|||++++.|+++
T Consensus 22 L~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 97 (172)
T 1t5i_A 22 LFDLLDVLE--FNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI 97 (172)
T ss_dssp HHHHHHHSC--CSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCG
T ss_pred HHHHHHhCC--CCcEEEEECCHHHHHHHHHHHHhcC--CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcch
Confidence 334444433 3679999999999999999997654 7789999999999988877655 6788999999999999999
Q ss_pred CCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 170 PKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 170 p~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|++.+||.. |+ |-|.++..||.||+||.+ +|.|+.+++..
T Consensus 98 ~~~~~Vi~~--------d~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 98 ERVNIAFNY--------DM----------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp GGCSEEEES--------SC----------CSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred hhCCEEEEE--------CC----------CCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 999999974 32 237788999999999986 59999999863
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.4e-12 Score=155.87 Aligned_cols=126 Identities=24% Similarity=0.272 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC-------------------------------------CcEE
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------------FFKV 131 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~-------------------------------------~~~v 131 (846)
.++..+.... .+.+|||+++..+++.++..|...+- ...|
T Consensus 333 ~l~~~l~~~~---~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 333 KIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHT---CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 3444444433 24799999999999999888865211 0127
Q ss_pred EEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcC
Q 003111 132 HILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 210 (846)
Q Consensus 132 ~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~G 210 (846)
..+||+|+++++..+...+ .|..||||||++++.||++|++.+||+. ...||... ..|+|.++..||+|
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~G 479 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSG 479 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHT
T ss_pred eEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhh
Confidence 8899999999998887665 6889999999999999999999999974 23466543 46889999999999
Q ss_pred CCCCCC---CCcEEEeeccc
Q 003111 211 RTGRTC---DGQVYRLVTKS 227 (846)
Q Consensus 211 RaGR~~---~G~c~rLyt~~ 227 (846)
||||.+ .|.||.++++.
T Consensus 480 RAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 480 RAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp TBCCTTTCSSEEEEEEECSC
T ss_pred hcccCCCCCceEEEEEECCC
Confidence 999997 49999999864
No 35
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.30 E-value=4.5e-12 Score=137.90 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=94.5
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++.++++.+.+.|...+ +.+..+||+++.+++..+.+.+ .+..+|+|||+++++|+++|++.+||+.+.
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDIG--FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC--CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 4679999999999999999997654 6789999999999888777654 678899999999999999999999998543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFG 230 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~ 230 (846)
|.|.++..||.|||||.+ +|.|+.++++..+.
T Consensus 316 ------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 316 ------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp ------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred ------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 347889999999999986 79999999886553
No 36
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.29 E-value=4.3e-12 Score=128.55 Aligned_cols=105 Identities=20% Similarity=0.340 Sum_probs=89.0
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .+..+|+|||++++.|++||++.+||+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~---- 128 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKG--VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN---- 128 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----
Confidence 579999999999999999887643 7789999999999988777655 577899999999999999999999997
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
||+ |.|..+..||.||+||.+ +|.|+.|++..
T Consensus 129 ----~d~----------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 ----YDM----------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp ----SSC----------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred ----eCC----------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 343 336788999999999986 69999999864
No 37
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.25 E-value=7.4e-12 Score=139.36 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=92.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++.++++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||++++.|++||++.+||+.+.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~- 353 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL- 353 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC-
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCC--CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC-
Confidence 579999999999999999997654 6789999999999988877655 677899999999999999999999997542
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|-|.++..||.||+||.+ +|.|+.++++...
T Consensus 354 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 354 -----------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp -----------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred -----------------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 237788999999999984 6999999998654
No 38
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.89 E-value=6.3e-13 Score=131.58 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=91.5
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||++++.|+++|++.+||+.+.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~ 107 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAG--INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM 107 (170)
Confidence 3679999999999999999887653 7888999999999888777665 577899999999999999999999997432
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
|.|..+..||.||+||.+ +|.|+.+++..+.
T Consensus 108 ------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 108 ------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 236677889999999986 6999999987644
No 39
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=2.5e-11 Score=142.49 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=92.8
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~-~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
++.+|||+++..+++.++..|... ...+.+..+||+|+.+++..+++.+ .+..+|+|||++++.||+||+|.+||..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 367 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcC
Confidence 468999999999999999888653 2257899999999999988877655 67889999999999999999999999744
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+ |-|..+..||.|||||.+ +|.|+.++++..
T Consensus 368 --------~----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 368 --------V----------PSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp --------C----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred --------C----------CCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 2 236788999999999987 599999999865
No 40
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.24 E-value=3.5e-12 Score=115.71 Aligned_cols=52 Identities=40% Similarity=0.974 Sum_probs=47.3
Q ss_pred ccccccccccccCcCCCCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
++++.+|+||++|.|++|++|+|+|+ ..+|++|++.|.|.+|++|+|+|...
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~----~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG----DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS----SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC----CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 57899999999999999999999998 56899997559999999999999843
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.24 E-value=2.2e-11 Score=143.68 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=94.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.++..|...+ +.+..+||+|+.+++..+++.+ .+..+|||||++++.||++|+|++||+.+.
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~g--~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNLG--IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 4679999999999999999997654 7899999999999988887655 678899999999999999999999998554
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 229 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~ 229 (846)
. -|..+..||+|||||.+ +|.|+.||+..+.
T Consensus 345 p------------------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 345 S------------------KSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp C------------------SSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred C------------------CCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 2 27889999999999986 6999999987654
No 42
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.23 E-value=2.6e-11 Score=130.50 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=87.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++.++++.+.+.|. .+..+||+++.+++..+.+.+ .+..+|+|||++++.|+++|++.+||+.+.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 4689999999999999988775 478899999999988777654 678899999999999999999999997542
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTK 226 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~ 226 (846)
|.|.++..||.|||||.+ +|.|+.++..
T Consensus 294 ------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 294 ------------------PQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp ------------------CSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred ------------------CCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 237788999999999985 6999999883
No 43
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.21 E-value=5.8e-11 Score=130.78 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=92.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++.++++.+...|...+ +.+..+||+++.+++..+.+.+ .+..+|+|||++++.|+++|++.+||..+.
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 4689999999999999999997654 6789999999999988777654 678899999999999999999999997443
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|-|.++..||.||+||.+ +|.|+.+++.+
T Consensus 328 ------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 328 ------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp ------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred ------------------CCCHHHHHHhcccccCCCCceEEEEEEccc
Confidence 237889999999999985 69999999875
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.20 E-value=4.7e-11 Score=135.31 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=90.5
Q ss_pred ceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCcc
Q 003111 104 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRSL 182 (846)
Q Consensus 104 ~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k 182 (846)
.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||+++++|++||+|.+||+.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~---- 375 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINY---- 375 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT--CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEES----
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEE----
Confidence 49999999999999999997654 7899999999999988887655 6788999999999999999999999984
Q ss_pred eeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 183 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 183 ~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
|. |-|..+..||.||+||.+ .|.|+.+|+.+
T Consensus 376 ----d~----------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 376 ----DM----------PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp ----SC----------CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred ----CC----------CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 32 237788999999999985 59999999853
No 45
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.20 E-value=3.6e-11 Score=140.14 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=92.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
++.+|||+++..+++.++..|.... ..+.+..+||+|+.+++..+++.+ .+..+|+|||++++.||+||+|.+||..+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEEC
Confidence 4689999999999999998886542 257899999999999988877655 67889999999999999999999999744
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+ |.|..+..||+|||||.+ +|.|+.++++..
T Consensus 419 --------~----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 419 --------V----------PSELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp --------C----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred --------C----------CCchhhhhhhcCccccCCCCceEEEEEchhH
Confidence 2 236788999999999986 699999998754
No 46
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.17 E-value=8.2e-12 Score=108.17 Aligned_cols=59 Identities=29% Similarity=0.630 Sum_probs=27.4
Q ss_pred CCCccccccccccc-cCcCCCCCCCCccccCCC----------CCcccccccccCCCCCCCCCCCCCCCC
Q 003111 557 SETPGEAPLCVYFI-NGSCNRGTGCPFSHSLQA----------KRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 557 ~~~~~k~~~C~~f~-~G~C~~G~~C~FsH~~~~----------~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
....+++.+|++|+ +|.|++|++|+|+|+... ++.+|++|...|.|.+|++|+|.|...
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 34467999999996 799999999999999852 256899887669999999999999753
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.17 E-value=3.4e-11 Score=134.84 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecC--------CccHHHHHHHhhcc-CCCe
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHS--------SVDTEQALMAMKIC-KSHR 154 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs--------~l~~~~~~~~~~~~-~~~r 154 (846)
.+.+.+++..+....+ ++.+|||+++...++.+.+.|... ++.+..+|| +++.+++..+++.+ .+..
T Consensus 345 ~~~l~~~l~~~~~~~~--~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~ 420 (494)
T 1wp9_A 345 MDKLKEIIREQLQRKQ--NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 420 (494)
T ss_dssp HHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhccCC--CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCc
Confidence 4455566666554333 467999999999999999999765 378899999 88888877776554 5678
Q ss_pred EEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 155 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 155 KVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
+|+|||++++.|+++|++.+||.. |+. -|.++..||.|||||.++|.||+|+++...
T Consensus 421 ~vLv~T~~~~~Gldl~~~~~Vi~~--------d~~----------~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 421 NVLVATSVGEEGLDVPEVDLVVFY--------EPV----------PSAIRSIQRRGRTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp SEEEECGGGGGGGGSTTCCEEEES--------SCC----------HHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred eEEEECCccccCCCchhCCEEEEe--------CCC----------CCHHHHHHHHhhccCCCCceEEEEEecCCH
Confidence 999999999999999999999953 322 267789999999999999999999998644
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.15 E-value=4.3e-11 Score=138.10 Aligned_cols=125 Identities=13% Similarity=0.139 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC----------CCcEEEEecCCccHHHHHHHhhcc-C-
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKIC-K- 151 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~----------~~~~v~~Lhs~l~~~~~~~~~~~~-~- 151 (846)
.+.+.+++.......+ ++.+|||.++...++.+...|.... .......+||+|+.++|..+++.| .
T Consensus 374 ~~~L~~~l~~~~~~~~--~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 374 LEELVCILDDAYRYNP--QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHCT--TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred HHHHHHHHHHHhcCCC--CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3444555555444333 3679999999999999999997541 123445668889999988887766 4
Q ss_pred CCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 152 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 152 ~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
|..+|+|||++++.||+||+|.+||. ||+. -|..+..||.|| ||..+|.||.|+++...
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p----------~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp --CCEEEEEC-----------CEEEE--------ETCC----------SCHHHHHHC---------CCEEEEESCHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 77899999999999999999999996 6653 367889999999 99999999999998654
No 49
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.15 E-value=1.1e-11 Score=143.53 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=76.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||+++..+++.+...|...+ ..+..+||+++.++++.+++.+ .|..+|+|||+++++|++||+|.+||+.+.
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~~--~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~ 434 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTADG--HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 434 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTTT--CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC---
T ss_pred CCcEEEEECCHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECC
Confidence 4689999999999999999997643 6788999999988877766554 678899999999999999999999997543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
.... ..+-|..+..||+|||||.+ +|.|+.+++..
T Consensus 435 p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 435 PLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -CC-----------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 2110 11246788999999999987 69999999853
No 50
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.15 E-value=4.2e-11 Score=137.78 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC----------CCcEEEEecCCccHHHHHHHhhcc-C-
Q 003111 84 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKIC-K- 151 (846)
Q Consensus 84 ~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~----------~~~~v~~Lhs~l~~~~~~~~~~~~-~- 151 (846)
.+.+.+++..+....+ ++.+|||.++...++.+...|...+ .......+||+|+.++|..+++.| .
T Consensus 373 ~~~l~~~l~~~~~~~~--~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 373 LRDLYLVLQEEYHLKP--ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHCT--TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHhccCC--CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4555566666655544 3689999999999999999886432 112345567799999988888766 4
Q ss_pred CCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 152 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 152 ~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
|..+|+|||++++.||+||+|.+||. ||+.. |..+..||.|| ||..+|.||.|+++...
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~--------~d~p~----------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVIL--------YEYVG----------NVIKMIQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEE--------ESCCS----------SCCCEECSSCC-CTTTSCEEEEEESCHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEE--------eCCCC----------CHHHHHHhcCc-CcCCCceEEEEEcCCCH
Confidence 67899999999999999999999996 55543 33345699999 99999999999998644
No 51
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.13 E-value=5e-12 Score=139.26 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++.++++.++..|...+ +.+..+||+++.+++..+.+.+ .+..+|+|||++++.|+++|++.+||+.+.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC--CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 3679999999999999999887653 7789999999999888777655 677899999999999999999999997543
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSFFGT 231 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~~~~ 231 (846)
+.|.++..||.||+||.+ +|.|+.+++++....
T Consensus 337 ------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 337 ------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ----------------------------------------------------
T ss_pred ------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 346778899999999985 699999999876543
No 52
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.09 E-value=2.1e-11 Score=103.87 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=46.2
Q ss_pred ccccccccccccCcCCCCC-CCCccccCC--------CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGT-GCPFSHSLQ--------AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~-~C~FsH~~~--------~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
..+.++|++|++|.|.+|+ .|+|+|+.. .+.++|++|++ |.|.+| +|+|.|..
T Consensus 3 ~~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 3 TDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSRE-KCKYFHPP 64 (70)
T ss_dssp -CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHT-TCCCCT-TCCSBCCC
T ss_pred cccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCc-CCCCCC-CcCeeCCH
Confidence 4578899999999999999 599999763 35679999999 999999 99999974
No 53
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.08 E-value=1.1e-11 Score=141.82 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
.+.+|||+++..+++.+...|...+ +.+..+||+++.+++..+++.+ .|..+|+|||++++.|++||+|.+||+.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~--~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEG--HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCC--ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecC
Confidence 3579999999999999999887653 7789999999999988877665 678899999999999999999999998554
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
..... .+.|..+..||+|||||.+ +|.|+.+++...
T Consensus 411 p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 411 PVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------
T ss_pred CCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 22111 1346678899999999976 599999998653
No 54
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.7e-11 Score=109.76 Aligned_cols=54 Identities=24% Similarity=0.608 Sum_probs=48.7
Q ss_pred CccccccccccccCcCCCCC-CCCccccCC--------CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 559 TPGEAPLCVYFINGSCNRGT-GCPFSHSLQ--------AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 559 ~~~k~~~C~~f~~G~C~~G~-~C~FsH~~~--------~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
++.+.++|++|++|.|.+|+ .|+|+|+.. .+.++|++|++ |.|.+| +|+|.|..
T Consensus 16 ~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 16 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMRE-KCKYFHPP 78 (98)
T ss_dssp CSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHH-TCCCCT-TCCSBCCC
T ss_pred ChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhcc-CCCCCC-CcCccCCh
Confidence 46688999999999999999 799999974 45679999999 999999 99999974
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.03 E-value=5.2e-10 Score=141.19 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=91.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
+|.+|||+++.++++.+.+.|....++..+..+||+|+.++++.++..+ .|..+|+|||+++|+||+||++.+||-
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--- 888 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--- 888 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE---
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE---
Confidence 4689999999999999998887765568899999999999988887655 678899999999999999999999993
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
+++.. .+-++..||+||+||.+ .|.||.+++..
T Consensus 889 -----~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 -----ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp -----TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred -----eCCCC---------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 23221 13467889999999976 69999998764
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=135.85 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=86.3
Q ss_pred HHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCC----CCCcEEEEecCC--------ccHHHHHHHhhcc-CCCeE
Q 003111 89 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSS--------VDTEQALMAMKIC-KSHRK 155 (846)
Q Consensus 89 ~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~----~~~~~v~~Lhs~--------l~~~~~~~~~~~~-~~~rK 155 (846)
+++.......+. ++.+|||.++...++.+...|... ..++.+..+||+ |+.++|..+++.+ .|..+
T Consensus 388 ~~L~~~~~~~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~ 466 (699)
T 4gl2_A 388 NTIMEQYTRTEE-SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 466 (699)
T ss_dssp HHHHHHHHHSSS-CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C
T ss_pred HHHHHHHhcCCC-CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc
Confidence 344443333321 368999999999999999999764 114788999999 9999988887665 67889
Q ss_pred EEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeecc
Q 003111 156 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 226 (846)
Q Consensus 156 VIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~ 226 (846)
|+|||++++.||+||+|.+||. ||+.. |..+..||+|||||. |.++.++..
T Consensus 467 VLVaT~~~~~GIDip~v~~VI~--------~d~p~----------s~~~~~Qr~GRArr~--g~~~~l~~~ 517 (699)
T 4gl2_A 467 LLIATTVAEEGLDIKECNIVIR--------YGLVT----------NEIAMVQARGRARAD--ESTYVLVAH 517 (699)
T ss_dssp CSEEECSCCTTSCCCSCCCCEE--------ESCCC----------CHHHHHHHHTTSCSS--SCEEEEEEE
T ss_pred EEEEccccccCCccccCCEEEE--------eCCCC----------CHHHHHHHcCCCCCC--CceEEEEEe
Confidence 9999999999999999999995 56432 678899999998875 455555544
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.01 E-value=7.6e-11 Score=142.90 Aligned_cols=107 Identities=17% Similarity=0.310 Sum_probs=82.8
Q ss_pred ccceEEEcCcHHH--------HHHHHHHhcC-CCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCC
Q 003111 102 EKSILVFLPTYYA--------LEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPK 171 (846)
Q Consensus 102 ~G~ILVFLPg~~e--------I~~~~~~L~~-~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~ 171 (846)
++.++||+|..++ ++.+.+.|.. ...++.+..+||+|+.+++..+++.+ .|..+|+|||+++|.||+||+
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~ 657 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPR 657 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTT
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCC
Confidence 4679999997654 4566666765 44457889999999988887777655 678899999999999999999
Q ss_pred eEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeec
Q 003111 172 VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 225 (846)
Q Consensus 172 V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt 225 (846)
+.+||. ||+.. .+.++..||+||+||.+ +|.||.+++
T Consensus 658 v~~VIi--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 658 ANVMVI--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCEEEB--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCEEEE--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999995 44432 14578899999999965 699999987
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.00 E-value=3.8e-10 Score=137.47 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCC----------CCcEEEEecCCccHHHHHHHhhcc-C-C
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKIC-K-S 152 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~----------~~~~v~~Lhs~l~~~~~~~~~~~~-~-~ 152 (846)
+.+.+++.......+ ++.+|||.++...++.+...|.... .......+||+|+.++|..+++.| . |
T Consensus 616 ~~L~~lL~~~~~~~~--~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 616 EELVCILDDAYRYNP--QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp HHHHHHHHHHHHHCS--SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------
T ss_pred HHHHHHHHHHhccCC--CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 344455544433333 3689999999999999999886531 123455678999999988887766 4 6
Q ss_pred CeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 153 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 153 ~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
..+|+|||++++.||+||+|.+||. ||+.. |..+..||+|| ||..+|.||+|+++...
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI~--------yd~p~----------s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVVL--------YEYSG----------NVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEECC-------CCCSEEEE--------ESCCS----------CHHHHHTC--------CCCEEEEECCHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEEE--------eCCCC----------CHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 7899999999999999999999996 66532 67889999999 99999999999998644
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.00 E-value=1.2e-09 Score=130.57 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=93.3
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++...++.+...|...+ +.+..+||+++..++..+++.+ .|..+|+||||+++.|++||+|.+||.++..
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHG--IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred CEEEEEECCHHHHHHHHHHHHhcC--CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 479999999999999999997654 6788899999999988876554 6788999999999999999999999976532
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
+. + .+.|..+..||+|||||.++|.|+.++++.
T Consensus 518 ~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 518 KE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp SC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred cc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 11 1 145788999999999999999999998764
No 60
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.99 E-value=8.6e-10 Score=131.80 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=93.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+.+|||+++...++.+...|...+ +.+..+||+++..++..+++.+ .|..+|+||||+++.|++||+|.+||.++..
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEIG--IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcC--CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 579999999999999999997654 6788899999999988876554 5778999999999999999999999976532
Q ss_pred ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 182 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 182 k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
+. + .+.|..+..||+|||||..+|.|+.++++.
T Consensus 524 ~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 524 KE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp CC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred cc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 11 1 145788999999999999999999998874
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.99 E-value=2.7e-09 Score=128.42 Aligned_cols=121 Identities=21% Similarity=0.163 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-++.+++.+...+... ..+|||..+.+..+.+...|...+ +.+..|||.+...++..+...+.. -+|+||||+
T Consensus 417 K~~al~~~i~~~~~~~----~pvLVft~s~~~se~Ls~~L~~~g--i~~~vLhg~~~~rEr~ii~~ag~~-g~VlIATdm 489 (844)
T 1tf5_A 417 KFKAVAEDVAQRYMTG----QPVLVGTVAVETSELISKLLKNKG--IPHQVLNAKNHEREAQIIEEAGQK-GAVTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHT----CCEEEEESCHHHHHHHHHHHHTTT--CCCEEECSSCHHHHHHHHTTTTST-TCEEEEETT
T ss_pred HHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHHHHHHHCC--CCEEEeeCCccHHHHHHHHHcCCC-CeEEEeCCc
Confidence 3566667776666543 249999999999999999998765 778899999877776655444322 379999999
Q ss_pred CccccCCC--------CeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 163 AESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 163 AEtsiTIp--------~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
|.+|+.|+ |+.+||.+.+ +-|.....||.||+||.+ +|.++.+++.++
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred cccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999 8999997543 236778899999999987 599998888754
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.92 E-value=3.6e-09 Score=125.10 Aligned_cols=122 Identities=21% Similarity=0.193 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+-+..+++.+...+.+.. .||||..+.+..+.+...|...+ +....|||+....++..+...+.. -.|+||||
T Consensus 458 eK~~al~~~I~~~~~~gq----pVLVFt~S~e~sE~Ls~~L~~~G--i~~~vLhgkq~~rE~~ii~~ag~~-g~VtVATd 530 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQ----PVLVGTTSIEKSELLSSMLKKKG--IPHQVLNAKYHEKEAEIVAKAGQK-GMVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHTC----CEEEEESSHHHHHHHHHHHHTTT--CCCEEECSCHHHHHHHHHHHHHST-TCEEEEET
T ss_pred HHHHHHHHHHHHHhhCCC----CEEEEECCHHHHHHHHHHHHHCC--CCEEEeeCCchHHHHHHHHhCCCC-CeEEEEcc
Confidence 345677777777765543 49999999999999999998765 778889999655555444333322 26999999
Q ss_pred CCccccCCC--------CeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeecccc
Q 003111 162 IAESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 162 IAEtsiTIp--------~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
+|.+|+.|+ |+.+||.+.+ |-|.....||.||+||.+ ||.+..+++.++
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999998 7779997543 236677889999999988 599988888754
No 63
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.91 E-value=1.2e-09 Score=135.56 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=59.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCC----------CCcEEEEecCCccHHHHHHHhhcc-C-CCeEEEEecCCCccccCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKIC-K-SHRKVILATNIAESSVTI 169 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~----------~~~~v~~Lhs~l~~~~~~~~~~~~-~-~~rKVIlATnIAEtsiTI 169 (846)
++.+|||.++...++.+...|.... .+.....+||+|+..+|..+++.+ . |..+|+|||++++.||+|
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 4689999999999999998886431 123345668999999988887766 4 778999999999999999
Q ss_pred CCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccccc
Q 003111 170 PKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 170 p~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~~~ 229 (846)
|+|.+||. ||+.. |..+..||+|| ||..+|.||.|+++...
T Consensus 711 p~v~~VI~--------yD~p~----------s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 711 VQCNLVVL--------YEYSG----------NVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp CCCSEEEE--------ESCCS----------CSHHHHCC--------CCCEEEEESCHHH
T ss_pred hhCCEEEE--------eCCCC----------CHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 99999996 66532 66788999999 99999999999988644
No 64
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.88 E-value=7.2e-10 Score=97.32 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=47.1
Q ss_pred ccccccccccccCcCCCCC-CCCccccCC------CCCcccccccccCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGT-GCPFSHSLQ------AKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~-~C~FsH~~~------~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
..+.++|++|++|.|.+|+ .|+|+|+.. .+.++|.+|++ |.|.++ .|+|.|..
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflk-G~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLK-GRCSRE-NCKYLHPP 65 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHT-TCCCCS-SCSSCCCC
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhh-ccccCC-CcceeCCh
Confidence 4578899999999999997 999999974 34679999999 999999 99999974
No 65
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.86 E-value=6.8e-09 Score=124.76 Aligned_cols=121 Identities=20% Similarity=0.169 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-++.|++.+...+... ..||||..+.+..+.+...|...+ +.+..|||.....++..+...+... .|.||||+
T Consensus 426 K~~al~~~i~~~~~~g----qpvLVft~sie~se~Ls~~L~~~g--i~~~vLnak~~~rEa~iia~agr~G-~VtIATnm 498 (853)
T 2fsf_A 426 KIQAIIEDIKERTAKG----QPVLVGTISIEKSELVSNELTKAG--IKHNVLNAKFHANEAAIVAQAGYPA-AVTIATNM 498 (853)
T ss_dssp HHHHHHHHHHHHHTTT----CCEEEEESSHHHHHHHHHHHHHTT--CCCEECCTTCHHHHHHHHHTTTSTT-CEEEEESC
T ss_pred HHHHHHHHHHHHhcCC----CCEEEEECcHHHHHHHHHHHHHCC--CCEEEecCChhHHHHHHHHhcCCCC-eEEEeccc
Confidence 4566667666665432 259999999999999999998765 7788899998776766555554322 69999999
Q ss_pred CccccCCCC--------------------------------e-----EEEEeCCCcceeeecCCCCcccceeeecCHhhH
Q 003111 163 AESSVTIPK--------------------------------V-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 205 (846)
Q Consensus 163 AEtsiTIp~--------------------------------V-----~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa 205 (846)
|.+|+.|+. | .+||.+.+ +-|+...
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy 560 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER------------------HESRRID 560 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHH
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHH
Confidence 999999997 4 69997543 2367788
Q ss_pred HhhcCCCCCCC-CCcEEEeecccc
Q 003111 206 EQRRGRTGRTC-DGQVYRLVTKSF 228 (846)
Q Consensus 206 ~QR~GRaGR~~-~G~c~rLyt~~~ 228 (846)
.||+||+||.+ ||.+..+.+.++
T Consensus 561 ~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 561 NQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HhhccccccCCCCeeEEEEecccH
Confidence 99999999988 599888877653
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.79 E-value=1.4e-08 Score=122.28 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-+++|++.+...+.... .||||..+.+..+.+...|...+ +.+..|||.....++..+...+... .|.||||+
T Consensus 445 K~~al~~~i~~~~~~gq----pvLVft~Sie~sE~Ls~~L~~~G--i~~~vLnak~~~rEa~iia~agr~G-~VtIATnm 517 (922)
T 1nkt_A 445 KYIAVVDDVAERYAKGQ----PVLIGTTSVERSEYLSRQFTKRR--IPHNVLNAKYHEQEATIIAVAGRRG-GVTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHHHHHHHTT--CCCEEECSSCHHHHHHHHHTTTSTT-CEEEEETT
T ss_pred HHHHHHHHHHHHHhcCC----cEEEEECCHHHHHHHHHHHHHCC--CCEEEecCChhHHHHHHHHhcCCCC-eEEEecch
Confidence 45667777776665432 49999999999999999998765 7788899998766665554444322 79999999
Q ss_pred CccccCCCCe----------------------------------------------------EEEEeCCCcceeeecCCC
Q 003111 163 AESSVTIPKV----------------------------------------------------AYVIDSCRSLQVFWDVNR 190 (846)
Q Consensus 163 AEtsiTIp~V----------------------------------------------------~yVIDsG~~k~~~yd~~~ 190 (846)
|.+|+.|+.+ .+||.+-+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~---------- 587 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER---------- 587 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC----------
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC----------
Confidence 9999999975 58886532
Q ss_pred CcccceeeecCHhhHHhhcCCCCCCC-CCcEEEeeccc
Q 003111 191 KIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 227 (846)
Q Consensus 191 ~~~~l~~~~ISkasa~QR~GRaGR~~-~G~c~rLyt~~ 227 (846)
+-|+..-.||+||+||.+ ||....+.+.+
T Consensus 588 --------pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 588 --------HESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp --------CSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred --------CCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 337778899999999988 59988887764
No 67
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.78 E-value=7.6e-09 Score=115.69 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=81.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEE-EecCCccHHHHHHHhhccCCCeEEEEe----cCCCccccCCCC-eEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILHSSVDTEQALMAMKICKSHRKVILA----TNIAESSVTIPK-VAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~-~Lhs~l~~~~~~~~~~~~~~~rKVIlA----TnIAEtsiTIp~-V~yVI 176 (846)
+.+|||+++..+++.+...|...+ +.+. .+||. +++ ......|..+|+|| |++++.|++||+ |.+||
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~h~~----~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFK--FNVGETWSEF----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTT--CCEEESSSCH----HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC--CceehhhcCc----chH-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 579999999999999999997654 6777 88885 333 33334788999999 999999999999 99999
Q ss_pred eCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC-----CCcEEEeec
Q 003111 177 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVT 225 (846)
Q Consensus 177 DsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~-----~G~c~rLyt 225 (846)
+.+..+ + .|..+..||+|||||.+ .|.|+.++.
T Consensus 326 ~~~~p~--------~--------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 326 FWGTPS--------G--------PDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp EESCCT--------T--------TCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred EECCCC--------C--------CCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 754321 1 47889999999999975 699999983
No 68
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.76 E-value=3.8e-09 Score=93.75 Aligned_cols=53 Identities=25% Similarity=0.509 Sum_probs=47.2
Q ss_pred ccccccccccccCcCCCCC-CCCccccCCC------CCcccccccccCCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGT-GCPFSHSLQA------KRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~-~C~FsH~~~~------~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
..+.++|++|++|.|.+|+ .|+|+|.... +.++|..|++ |.|.++ .|+|.|..
T Consensus 14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflk-G~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLK-GRCSRE-NCKYLHPP 73 (89)
T ss_dssp SSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHH-TCCCCT-TCCSBCCC
T ss_pred cchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhh-CcCCCC-CcceecCH
Confidence 3468899999999999998 9999999852 5679999999 999999 99999974
No 69
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.74 E-value=4.6e-09 Score=119.61 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=84.9
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEecCCCccccCCCCeEEEEeCCC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTIPKVAYVIDSCR 180 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlATnIAEtsiTIp~V~yVIDsG~ 180 (846)
++.+|||.++.+.++.+...|. +..+||+++.++++.+++.+ .|..+|+|||++++.|+++|++.+||.
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~-------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--- 418 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL-------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--- 418 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT-------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE---
T ss_pred CCcEEEEECCHHHHHHHHHHhC-------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE---
Confidence 4689999999999999998874 44689999988887776554 577899999999999999999999996
Q ss_pred cceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCC----cEEEeecccccc
Q 003111 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG----QVYRLVTKSFFG 230 (846)
Q Consensus 181 ~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G----~c~rLyt~~~~~ 230 (846)
||+. -|.+...||.||+||.++| .+|.|+++...+
T Consensus 419 -----~~~~----------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 419 -----MSGS----------GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp -----ECCS----------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred -----ECCC----------CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 4433 2668899999999999887 467777775443
No 70
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.64 E-value=2.5e-08 Score=125.06 Aligned_cols=73 Identities=10% Similarity=0.174 Sum_probs=56.6
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEe----cCCCccccCCCCe-EEEEe
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA----TNIAESSVTIPKV-AYVID 177 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlA----TnIAEtsiTIp~V-~yVID 177 (846)
+.+|||+++..+++.+...|... +.+..+||++....+ ....|..+|+|| ||++++||+||+| .+||+
T Consensus 276 ~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~~~~l~----~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 276 TGGIIYARTGEEAEEIYESLKNK---FRIGIVTATKKGDYE----KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp SCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSSSHHHH----HHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred CCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccHHHHHH----HHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 57999999999999999999765 789999999953222 122577899999 9999999999995 99999
Q ss_pred CCCcc
Q 003111 178 SCRSL 182 (846)
Q Consensus 178 sG~~k 182 (846)
.|..+
T Consensus 349 ~~~P~ 353 (1054)
T 1gku_B 349 VGCPS 353 (1054)
T ss_dssp ESCCE
T ss_pred eCCCc
Confidence 99873
No 71
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.63 E-value=2.7e-08 Score=114.41 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCCeEEEEec-CC
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT-NI 162 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~rKVIlAT-nI 162 (846)
+++.+++...... ++..++||.. .++++.+.+.|...+ ..+..+||+++.++++.+++.+ .+..+|+||| ++
T Consensus 334 ~~l~~~l~~~~~~---~~~~~ivf~~-~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 334 KWIAKLAIKLAQK---DENAFVMFKH-VSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGV 407 (510)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEESS-HHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHH
T ss_pred HHHHHHHHHHHhc---CCCeEEEEec-HHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcCh
Confidence 3455555554432 1234666666 888888988887755 3789999999999888777655 6677899999 99
Q ss_pred CccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCc-EEEeecc
Q 003111 163 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ-VYRLVTK 226 (846)
Q Consensus 163 AEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~-c~rLyt~ 226 (846)
+|+|++||++.+||- |++. -|.++..||+||+||.++|. ++.+|+-
T Consensus 408 ~~~GiDip~v~~vi~--------~~~~----------~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 408 FSTGISVKNLHHVVL--------AHGV----------KSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp HHHSCCCCSEEEEEE--------SSCC----------CSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred hhcccccccCcEEEE--------eCCC----------CCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 999999999999995 3333 25678899999999998864 7777763
No 72
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.39 E-value=5.3e-07 Score=105.80 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCC------CcEEEEecCCccHHHHHHHhhcc-CC---Ce
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------FFKVHILHSSVDTEQALMAMKIC-KS---HR 154 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~------~~~v~~Lhs~l~~~~~~~~~~~~-~~---~r 154 (846)
+.+.+.+......... .+.+|||.++..+++.+...|..... .-.+..+||.++. +++.+++.+ .+ .+
T Consensus 423 ~~i~~~l~~~l~~~~~-~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~ 500 (590)
T 3h1t_A 423 DAFAKHLTDFMKRTDR-FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTP 500 (590)
T ss_dssp HHHHHHHHHHHHHHCT-TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHHhcCC-CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCC
Confidence 3444444444433222 36899999999999999888854321 1237788999764 444444444 33 33
Q ss_pred EEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC--Cc-EEEee
Q 003111 155 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLV 224 (846)
Q Consensus 155 KVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~--G~-c~rLy 224 (846)
.|+++|+++++|+.||+|..||- |++.. |.....||.||+||.++ |+ .+.++
T Consensus 501 ~ilvtt~~l~~GiDip~v~~Vi~--------~~~~~----------s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 501 VILTTSQLLTTGVDAPTCKNVVL--------ARVVN----------SMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CEEEESSTTTTTCCCTTEEEEEE--------ESCCC----------CHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EEEEECChhhcCccchheeEEEE--------EecCC----------ChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 48889999999999999999994 44432 67788999999999886 44 34444
No 73
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.36 E-value=7.2e-07 Score=110.96 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=86.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CCC--eEEEEecCCCccccCCCCeEEEEeC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSH--RKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~~--rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
++.+|||.++...++.+...|.... ++.+..+||+|+..++..+++.| .+. .+|+|||++++.|++||++.+||.
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~- 580 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM- 580 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC-
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE-
Confidence 4689999999999999999997532 37899999999998888777655 444 899999999999999999999995
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC-C--cEEEeeccc
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-G--QVYRLVTKS 227 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~-G--~c~rLyt~~ 227 (846)
||+.. +-+...||.||+||.+. | ..|+++.+.
T Consensus 581 -------~d~p~----------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 581 -------FDLPF----------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp -------SSCCS----------SHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred -------ecCCC----------CHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 45432 56788999999999775 4 456666554
No 74
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.32 E-value=6.7e-08 Score=121.46 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=61.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEE-EecCCccHHHHHHHhhccCCCeEEEEe----cCCCccccCCCC-eEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILHSSVDTEQALMAMKICKSHRKVILA----TNIAESSVTIPK-VAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~-~Lhs~l~~~~~~~~~~~~~~~rKVIlA----TnIAEtsiTIp~-V~yVI 176 (846)
+.+|||+++..+++.+...|...+ +.+. .+||. +++ ......|..+|+|| |+++++||+||+ |++||
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g--~~~~~~lhg~----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFK--FNVGETWSEF----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTT--CCEEESSSSH----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred CCEEEEECcHHHHHHHHHHHHhCC--CCeeeEecCc----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 579999999999999999997654 6777 89993 333 33334688999999 999999999999 99999
Q ss_pred eCCCcc
Q 003111 177 DSCRSL 182 (846)
Q Consensus 177 DsG~~k 182 (846)
+.|+.+
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999877
No 75
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.06 E-value=1.2e-05 Score=85.75 Aligned_cols=124 Identities=11% Similarity=0.083 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-C--CCeEEEEe
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-K--SHRKVILA 159 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~--~~rKVIlA 159 (846)
-.+.+.+++..+... +..+|||......++.+...|.... ++.+..+||+++.+++..+++.| . ..+-+++|
T Consensus 97 K~~~L~~ll~~~~~~----~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 97 KMIRTMEIIEEALDE----GDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp HHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345566666666543 2469999999999888888876421 25677899999998887776655 2 23347999
Q ss_pred cCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeeccccc
Q 003111 160 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF 229 (846)
Q Consensus 160 TnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~~~~ 229 (846)
|+++..|++++++.+||. ||+.-+ -+...||.||++|.+ +-.+|+|+++...
T Consensus 172 t~~~g~Glnl~~a~~VI~--------~d~~wn----------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIH--------FDRWWN----------PAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CCTTCCCCCCTTCSEEEE--------CSCCSC----------TTTC--------------CCEEEEEEETTSH
T ss_pred hhhhcCCcCcccCCEEEE--------ECCCCC----------hhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 999999999999999995 444322 233457888887765 3557999987543
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.01 E-value=7.4e-06 Score=93.78 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=78.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-C--CCeEEEEecCCCccccCCCCeEEEEeCC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-K--SHRKVILATNIAESSVTIPKVAYVIDSC 179 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~--~~rKVIlATnIAEtsiTIp~V~yVIDsG 179 (846)
+.+|||......++.+...|.... ++.+..+||+++.+++..+.+.| . ..+.+++||++++.|++++++.+||-
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~-- 418 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH-- 418 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE--
T ss_pred CcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE--
Confidence 479999999998888888776431 25677899999998888776655 2 23458999999999999999999995
Q ss_pred CcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcEEEeecccc
Q 003111 180 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQVYRLVTKSF 228 (846)
Q Consensus 180 ~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c~rLyt~~~ 228 (846)
||+.- +-+...||.||++|.+. ..+|+|+++..
T Consensus 419 ------~d~~~----------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 419 ------FDRWW----------NPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp ------SSCCS----------CC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred ------eCCCC----------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 44432 33445688888888764 45688888753
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.84 E-value=6.3e-05 Score=89.51 Aligned_cols=106 Identities=11% Similarity=0.150 Sum_probs=83.9
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhcc-CC---CeEEEEecCCCccccCCCCeEEEEeC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KS---HRKVILATNIAESSVTIPKVAYVIDS 178 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~-~~---~rKVIlATnIAEtsiTIp~V~yVIDs 178 (846)
..+|||......++.+...|...+ +.+..+||+++.+++..+++.| .+ ...+++||.+++.|++++++.+||-
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g--~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~- 493 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRR--YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM- 493 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHT--CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE-
T ss_pred CEEEEEEccHHHHHHHHHHHHHCC--CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE-
Confidence 469999999998888888776544 6788999999999888776655 22 2368999999999999999999994
Q ss_pred CCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCC---CcEEEeecccc
Q 003111 179 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD---GQVYRLVTKSF 228 (846)
Q Consensus 179 G~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~---G~c~rLyt~~~ 228 (846)
||+.- +-+...||.||++|.+. ..+|+|+++..
T Consensus 494 -------~d~~w----------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 494 -------FDPDW----------NPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp -------CSCCS----------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred -------ECCCC----------CccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 55432 56778899888888764 56889988753
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.73 E-value=4.4e-05 Score=93.06 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccC----CCeEEEEec
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK----SHRKVILAT 160 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~----~~rKVIlAT 160 (846)
.++.+++..+... +..+|||......++.+...|...+ +.+..+||+++..+++.+++.|. +...+++||
T Consensus 559 ~~L~~lL~~~~~~----g~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 559 VLLDQLLTRLKKD----GHRVLIFSQMVRMLDILGDYLSIKG--INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HHHHHHHHHHTTT----TCCEEEEESCHHHHHHHHHHHHHHT--CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred HHHHHHHHHHhhC----CCeEEEEechHHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 4444455444322 3479999999998888888886543 67889999999999888876663 234699999
Q ss_pred CCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCC---CCcEEEeecccccc
Q 003111 161 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFFG 230 (846)
Q Consensus 161 nIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~---~G~c~rLyt~~~~~ 230 (846)
.+++.||+++.+..||- ||+.- +-+...||.||++|.+ +..+|||+++...+
T Consensus 633 ~agg~GlNL~~a~~VI~--------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVI--------FDSDW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp HHHTTTCCCTTCCEEEE--------SSCCS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred ccccCCCCccccceEEE--------ecCCC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 99999999999999994 45432 4466778888888854 57789999986543
No 79
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=7.3e-05 Score=64.53 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=36.0
Q ss_pred CCCCCCCCc--ccccccccccc-CcCCCCCCCCccccCC-CCCcccccccc
Q 003111 552 KAVNGSETP--GEAPLCVYFIN-GSCNRGTGCPFSHSLQ-AKRPACKFFYS 598 (846)
Q Consensus 552 ~~~~~~~~~--~k~~~C~~f~~-G~C~~G~~C~FsH~~~-~~~~~C~~f~~ 598 (846)
+.+...++. .+..+|+||++ |.|. |+.|+|+|... .+.++|.+|.+
T Consensus 25 ~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~C~~f~~ 74 (77)
T 2d9n_A 25 DQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWSGP 74 (77)
T ss_dssp TSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSSSSCCTT
T ss_pred CCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccccCCCCccccc
Confidence 444444432 25678999998 9999 89999999975 56789999998
No 80
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.15 E-value=0.00018 Score=64.96 Aligned_cols=32 Identities=28% Similarity=0.610 Sum_probs=28.5
Q ss_pred CccccCC--CCCcccccccccCCCCCCCCCCCCCC
Q 003111 581 PFSHSLQ--AKRPACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 581 ~FsH~~~--~~~~~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
.|+|+.. .++.+|+||.+ |.|++|++|+|+|+
T Consensus 2 ~~sH~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFYIT-GFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCccccc-CcCCCCCCCCCCCC
Confidence 4899975 56779999987 99999999999998
No 81
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.14 E-value=0.00018 Score=73.38 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=21.9
Q ss_pred ccccccccccCcC----CCCCCCCccccCC
Q 003111 562 EAPLCVYFINGSC----NRGTGCPFSHSLQ 587 (846)
Q Consensus 562 k~~~C~~f~~G~C----~~G~~C~FsH~~~ 587 (846)
.--+||||+-|.| ..|..|+|||+..
T Consensus 88 ~LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~ 117 (229)
T 3u9g_A 88 SLHLCKLNLLGRCHYAQSQRNLCKYSHDVL 117 (229)
T ss_dssp SBCCCHHHHTTCCGGGTCCSSCCSSCSCTT
T ss_pred ceeechhhhcCcCCcccCCCCCcccccccC
Confidence 4668999999999 3568899999985
No 82
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.14 E-value=0.00014 Score=61.96 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=27.6
Q ss_pred cccCCCCCcccccccccCCCCCCCCCCCCCCCC
Q 003111 583 SHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 583 sH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
||+...+..+|+||++ |.|.+|++|+|+|+..
T Consensus 9 ~~~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CSSSCCCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred ccCCCCcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence 4555577889999999 9999999999999854
No 83
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.00065 Score=56.91 Aligned_cols=27 Identities=33% Similarity=0.886 Sum_probs=23.9
Q ss_pred cccccccccccCcCCCCCCCCccccCC
Q 003111 561 GEAPLCVYFINGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 561 ~k~~~C~~f~~G~C~~G~~C~FsH~~~ 587 (846)
.+..+|+.|..|.|.+|++|.|+|+..
T Consensus 18 ~k~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 18 GYFSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp SCCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred CCcccCcccCcCCCCCCCccCCcCCHH
Confidence 366999999889999999999999875
No 84
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.46 E-value=0.0015 Score=55.98 Aligned_cols=29 Identities=34% Similarity=0.778 Sum_probs=25.1
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCC
Q 003111 588 AKRPACKFFYSLQGCRNGDSCIFSHDLGQ 616 (846)
Q Consensus 588 ~~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 616 (846)
.++.+|++|++.|.|.+|++|+|+|+...
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 56789999986699999999999998643
No 85
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=96.38 E-value=0.01 Score=74.10 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCC
Q 003111 151 KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG 218 (846)
Q Consensus 151 ~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G 218 (846)
.+..+|+|+|+++.||+.+|.+.+++ +|.. .+-..+.||.||+||..+|
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l~tly---------lDkp----------l~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTLNTLF---------VDKN----------LRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTEEEEE---------EESC----------CCHHHHHHHHHTTCCCCCT
T ss_pred cCCCeEEEEcchHHhCcCcccccEEE---------EccC----------CCccceeehhhccCcCCCC
Confidence 56789999999999999999996544 4432 2456789999999999874
No 86
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.20 E-value=0.0019 Score=57.18 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=34.4
Q ss_pred CCCCCCccccCCCCCcccccccccCCCCCCC-CCCCCCCCCC
Q 003111 576 RGTGCPFSHSLQAKRPACKFFYSLQGCRNGD-SCIFSHDLGQ 616 (846)
Q Consensus 576 ~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~-~C~f~H~~~~ 616 (846)
.|+.+.+.|+...+..+|+.|++ |.|.+|+ .|+|+|....
T Consensus 3 ~~~~~~~~~~~~~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 3 SGSSGPVRDTKWLTLEVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp CCCCSCCCSCSSSEECBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred ccccccccCCCcchhhhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 46788888887777889999999 9999998 9999998543
No 87
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.11 E-value=0.0012 Score=59.66 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCCCCccccCCCCCcccccccccCCCCCCC-CCCCCCCCCC
Q 003111 576 RGTGCPFSHSLQAKRPACKFFYSLQGCRNGD-SCIFSHDLGQ 616 (846)
Q Consensus 576 ~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~-~C~f~H~~~~ 616 (846)
.|..+...|-...+..+|++|++ |.|.+|+ .|+|+|+...
T Consensus 6 ~~~~~~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 6 SGSTATQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADS 46 (98)
T ss_dssp CCSSCCCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSC
T ss_pred CCccccccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchh
Confidence 34567777777778889999999 9999998 7999998543
No 88
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.86 E-value=0.0014 Score=56.79 Aligned_cols=45 Identities=20% Similarity=0.550 Sum_probs=26.6
Q ss_pred ccccccccccccCcCCCCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHD 613 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~ 613 (846)
.+..+.||||.. |++ ..|+|.|.. ...+|+|+.. |.+ .+|.|.|.
T Consensus 6 ~~~~e~CKf~~~--Ctn-~~C~f~Hp~--~~~~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 6 EKSLEQCKFGTH--CTN-KRCKYRHAR--SHIMCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 344556777664 666 667777754 2346666543 666 35666663
No 89
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.80 E-value=0.0041 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.778 Sum_probs=23.7
Q ss_pred ccccccccccccCcCCCCCCCCccccC
Q 003111 560 PGEAPLCVYFINGSCNRGTGCPFSHSL 586 (846)
Q Consensus 560 ~~k~~~C~~f~~G~C~~G~~C~FsH~~ 586 (846)
+.+..+|++|++|.|.+| +|+|+|..
T Consensus 39 ~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 39 DNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred CCcceeccccCcCCCCCC-CcCeeCCH
Confidence 457899999999999999 89999976
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.66 E-value=0.028 Score=68.30 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhc
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK 123 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~ 123 (846)
+-+..|++-|...|.+.. .|||+..+.++-+.+..+|.
T Consensus 427 ~K~~AIv~eI~~~~~~Gq----PVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 427 GKFYAVVEEIAEKYERGQ----PVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHHHHHHHHTC----CEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC----CEEEEeCCHHHHHHHHHHHh
Confidence 346778888888887754 49999999998887777776
No 91
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.45 E-value=0.0086 Score=46.55 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=13.4
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCC
Q 003111 589 KRPACKFFYSLQGCRNGDSCIFSHDLG 615 (846)
Q Consensus 589 ~~~~C~~f~~~g~C~~G~~C~f~H~~~ 615 (846)
++.+|+-|...|.|++|.+|+++|+..
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 344555555555555555555555443
No 92
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.0064 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.665 Sum_probs=22.1
Q ss_pred CCcccccccccCCCCCCCCCCCCCCC
Q 003111 589 KRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 589 ~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
+..+|+.|.+ |.|.+|++|.|+|..
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCH
Confidence 4579999966 999999999999974
No 93
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.89 E-value=0.0095 Score=46.31 Aligned_cols=28 Identities=36% Similarity=0.787 Sum_probs=24.8
Q ss_pred ccccccccccc-cCcCCCCCCCCccccCC
Q 003111 560 PGEAPLCVYFI-NGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 560 ~~k~~~C~~f~-~G~C~~G~~C~FsH~~~ 587 (846)
..++.+|+-|. .|-|.+|.+|++|||..
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 45889999997 59999999999999984
No 94
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.690 Sum_probs=23.2
Q ss_pred cccccccccccCcCCCCCCCCccccCC
Q 003111 561 GEAPLCVYFINGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 561 ~k~~~C~~f~~G~C~~G~~C~FsH~~~ 587 (846)
.+..+|++|++|.|.+| +|+|+|...
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred CceeehhHhhhccccCC-CcceeCChH
Confidence 35889999999999998 899999873
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.30 E-value=0.066 Score=62.14 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCc-cHHHHHHHhhccCCCeEEEE--ecC
Q 003111 85 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV-DTEQALMAMKICKSHRKVIL--ATN 161 (846)
Q Consensus 85 ~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l-~~~~~~~~~~~~~~~rKVIl--ATn 161 (846)
+.+.+.+..+.... +|.+|||+|++..++.+...+.. .. +..++.- +.++ +.+.+.....|++ +|.
T Consensus 370 ~~~~~~l~~~~~~~---~g~~lvff~S~~~~~~v~~~l~~----~~-~~~q~~~~~~~~---~l~~f~~~~~il~~V~~~ 438 (540)
T 2vl7_A 370 PIYSILLKRIYENS---SKSVLVFFPSYEMLESVRIHLSG----IP-VIEENKKTRHEE---VLELMKTGKYLVMLVMRA 438 (540)
T ss_dssp HHHHHHHHHHHHTC---SSEEEEEESCHHHHHHHHTTCTT----SC-EEESTTTCCHHH---HHHHHHTSCCEEEEEC--
T ss_pred HHHHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHhcc----Cc-eEecCCCCcHHH---HHHHHhcCCeEEEEEecC
Confidence 45667777777654 47899999999999999887754 22 2335443 2222 2222222235777 889
Q ss_pred CCccccCCCC----eEEEEeCCCcceeeecCCC--Cc--------ccc--eeeecCHhhHHhhcCCCCCCCC--CcEEEe
Q 003111 162 IAESSVTIPK----VAYVIDSCRSLQVFWDVNR--KI--------DSA--ELVWVSQSQAEQRRGRTGRTCD--GQVYRL 223 (846)
Q Consensus 162 IAEtsiTIp~----V~yVIDsG~~k~~~yd~~~--~~--------~~l--~~~~ISkasa~QR~GRaGR~~~--G~c~rL 223 (846)
...-||.+|| ++.||-.|+--...-||.. ++ ... ...+..--..+|-.||+-|... |..+-|
T Consensus 439 ~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 439 KESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp -------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred ceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 9999999998 8989977764221111110 00 000 0011113457799999999764 765544
No 96
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.43 E-value=0.026 Score=48.80 Aligned_cols=58 Identities=24% Similarity=0.524 Sum_probs=41.7
Q ss_pred ccCCCCCCCCCCCCccccccccccccCcCCCCCCCCccccCCCCCcccccccccCCCCCCCCCCCCCCC
Q 003111 546 VSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 546 ~~~~~~~~~~~~~~~~k~~~C~~f~~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
...+.++.+.+.+ +....+|+|+. .|.+ .+|.|+|.. ...|||+.. |.+ .+|.|.|..
T Consensus 15 ~~~Ctn~~C~f~H-p~~~~~Cr~g~--~C~~-~~C~f~HP~---~~~Crf~~~---C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 15 GTHCTNKRCKYRH-ARSHIMCREGA--NCTR-IDCLFGHPI---NEDCRFGVN---CKN-IYCLFRHPP 72 (80)
Confidence 3345555555543 33456899975 5998 679999963 457999865 999 599999964
No 97
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.97 E-value=0.052 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.841 Sum_probs=22.1
Q ss_pred cccccccccCcCCCCCCCCccccCC
Q 003111 563 APLCVYFINGSCNRGTGCPFSHSLQ 587 (846)
Q Consensus 563 ~~~C~~f~~G~C~~G~~C~FsH~~~ 587 (846)
..+|-||.+|.|.+|+.|+|.|..+
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 4589999999999999999999875
No 98
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.34 E-value=0.078 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.8
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q 003111 590 RPACKFFYSLQGCRNGDSCIFSHDLGQ 616 (846)
Q Consensus 590 ~~~C~~f~~~g~C~~G~~C~f~H~~~~ 616 (846)
..+|-||.+ |.|.+|+.|+|.|..|.
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 348999999 99999999999997553
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.31 E-value=1.9 Score=50.72 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEec--
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAT-- 160 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlAT-- 160 (846)
.++-+.+.|..+.... +|.+|||+|++..++.+...+.. +..- +..+++..++..+.+.+.+..-|+++|
T Consensus 432 ~~~~~~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~l~~----~~~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~ 503 (620)
T 4a15_A 432 ELDRMATVIEDIILKV---KKNTIVYFPSYSLMDRVENRVSF----EHMK-EYRGIDQKELYSMLKKFRRDHGTIFAVSG 503 (620)
T ss_dssp HHHHHHHHHHHHHHHH---CSCEEEEESCHHHHHHHTSSCCS----CCEE-CCTTCCSHHHHHHHHHHTTSCCEEEEETT
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHHHh----cchh-ccCCCChhHHHHHHHHhccCCcEEEEEec
Confidence 3455667777777654 37899999999999999887761 2211 444444344444444333667899997
Q ss_pred -CCCccccCCCC
Q 003111 161 -NIAESSVTIPK 171 (846)
Q Consensus 161 -nIAEtsiTIp~ 171 (846)
...| ||.+||
T Consensus 504 gsf~E-GiD~~g 514 (620)
T 4a15_A 504 GRLSE-GINFPG 514 (620)
T ss_dssp SCC---------
T ss_pred Cceec-cccCCC
Confidence 3444 777775
No 100
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=72.20 E-value=2.4 Score=43.33 Aligned_cols=43 Identities=30% Similarity=0.639 Sum_probs=32.7
Q ss_pred ccccccccccCcCCCCCCCCccccCCCCCcccccccccCCCC----CCCCCCCCCCCCCC
Q 003111 562 EAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCR----NGDSCIFSHDLGQP 617 (846)
Q Consensus 562 k~~~C~~f~~G~C~~G~~C~FsH~~~~~~~~C~~f~~~g~C~----~G~~C~f~H~~~~~ 617 (846)
...+|+ .+.|.. .|.-.| .||+|+- |.|. .+..|+|+|+..++
T Consensus 73 ~lRLC~---~~~C~g--~C~~LH-------LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~ 119 (229)
T 3u9g_A 73 RARVCR---RKYCQR--PCDSLH-------LCKLNLL-GRCHYAQSQRNLCKYSHDVLSE 119 (229)
T ss_dssp SCCBCC---CTTCCS--SCCSBC-------CCHHHHT-TCCGGGTCCSSCCSSCSCTTCH
T ss_pred cceeeC---CCCCCc--ccccee-------echhhhc-CcCCcccCCCCCcccccccCch
Confidence 455674 466776 388888 8999999 9993 35789999997554
No 101
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=64.59 E-value=24 Score=40.61 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEec-
Q 003111 82 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAT- 160 (846)
Q Consensus 82 ~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlAT- 160 (846)
..++.+.+.|..+.... +|.+|||+|++..++++...+ ...++.=..+++.++....++ ....-|+++|
T Consensus 376 ~~~~~l~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~~-----~~~v~~q~~~~~~~~~~~~~~--~~~~~vl~~v~ 445 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQA---KANVLVVFPSYEIMDRVMSRI-----SLPKYVESEDSSVEDLYSAIS--ANNKVLIGSVG 445 (551)
T ss_dssp HHHHHHHHHHHHHHHHC---SSEEEEEESCHHHHHHHHTTC-----CSSEEECCSSCCHHHHHHHTT--SSSSCEEEEES
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEecCHHHHHHHHHhc-----CCcEEEcCCCCCHHHHHHHHH--hcCCeEEEEEe
Confidence 44566778888887765 378999999999999888621 233333233556555544444 2234799998
Q ss_pred --CCCccccCCC---C--eEEEE
Q 003111 161 --NIAESSVTIP---K--VAYVI 176 (846)
Q Consensus 161 --nIAEtsiTIp---~--V~yVI 176 (846)
...| ||.+| | .+.||
T Consensus 446 gg~~~E-GiD~~d~~g~~l~~vi 467 (551)
T 3crv_A 446 KGKLAE-GIELRNNDRSLISDVV 467 (551)
T ss_dssp SCCSCC-SSCCEETTEESEEEEE
T ss_pred cceecc-cccccccCCcceeEEE
Confidence 5665 89999 3 45555
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=55.06 E-value=70 Score=34.55 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC
Q 003111 83 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 162 (846)
Q Consensus 83 ~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI 162 (846)
-+.++-+++-.+.+. +..||||.-....++-+-..+... ++....+-|+...++++ .......|.|.|.-
T Consensus 110 Kf~~L~~LL~~l~~~----~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~~~k----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 110 KFSVLRDLINLVQEY----ETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKSAAA----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHHHHHHHHHHHTTS----CEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC-----------CCSEEEEEEESS
T ss_pred cHHHHHHHHHHHHhC----CCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhhhhh----cccCCceEEEEECC
Confidence 345665666555432 347999999888887777777653 48888888885443332 12344577777763
Q ss_pred CccccC-----CCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCC--CCCCCCcEEEeeccccc
Q 003111 163 AESSVT-----IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRT--GRTCDGQVYRLVTKSFF 229 (846)
Q Consensus 163 AEtsiT-----Ip~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRa--GR~~~G~c~rLyt~~~~ 229 (846)
+.-++. .-+...|| .||+.-+...- --+|..|+-|. |...+=..|||.+....
T Consensus 180 g~~gin~~~~nl~~aD~VI--------~~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLI--------CLDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEE--------ECSTTCCTTSH------HHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCCCcCcccccCCCCCEEE--------EECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 333332 22333333 24443332210 02455677776 34556789999987543
No 103
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=42.09 E-value=25 Score=33.96 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=46.2
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC-----C-CccccCCCCeEEE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----I-AESSVTIPKVAYV 175 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn-----I-AEtsiTIp~V~yV 175 (846)
++.+||.+|+.+-+.+..+.+......+.+..++|+.+...+..... ....|+|+|+ . ....+.+.++.+|
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 35699999999877777777665544578889999876544332221 1247999995 1 1123445666665
Q ss_pred E
Q 003111 176 I 176 (846)
Q Consensus 176 I 176 (846)
|
T Consensus 149 V 149 (207)
T 2gxq_A 149 V 149 (207)
T ss_dssp E
T ss_pred E
Confidence 5
No 104
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=31.06 E-value=1.2e+02 Score=29.36 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=45.7
Q ss_pred cceEEEcCcHHHHHHHHHHhcC---CCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC-----C-ccccCCCCeE
Q 003111 103 KSILVFLPTYYALEQQWHLMKP---LSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI-----A-ESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~---~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI-----A-EtsiTIp~V~ 173 (846)
..+||.+|+.+=+++..+.+.. ....+.+..++|+.+..++...... +...|+|+|.= . ...+.+.++.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK--NCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH--SCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc--CCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 3799999998866665554432 2235788999999877655433321 23479999951 1 1234566777
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 161 ~lV 163 (220)
T 1t6n_A 161 HFI 163 (220)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 105
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=30.50 E-value=81 Score=30.16 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=44.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcC---CCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeE
Q 003111 103 KSILVFLPTYYALEQQWHLMKP---LSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVA 173 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~---~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~ 173 (846)
..+||.+|+.+=+++..+.+.. ..+.+.+..++|+.+..++.... .+...|+|+|+ +....+.+.++.
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 148 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL---DDTVHVVIATPGRILDLIKKGVAKVDHVQ 148 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT---TSCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc---CCCCCEEEeCHHHHHHHHHcCCcCcccCC
Confidence 4699999998866665554432 22357888899998766543322 23357999996 111223455666
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 149 ~lV 151 (206)
T 1vec_A 149 MIV 151 (206)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 106
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=29.60 E-value=13 Score=38.06 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=0.0
Q ss_pred ccccccccccCcCCCCCCCCccccC
Q 003111 562 EAPLCVYFINGSCNRGTGCPFSHSL 586 (846)
Q Consensus 562 k~~~C~~f~~G~C~~G~~C~FsH~~ 586 (846)
+..+|-| .-.|.+|.+|+|-|..
T Consensus 191 ~~~~~~~--~~~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 191 RKQPCPY--GRKCTYGIKCRFFHPE 213 (223)
T ss_dssp -------------------------
T ss_pred CCCCCCC--CcccccCCcceecCCc
Confidence 4555666 2347777777776654
No 107
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=28.34 E-value=12 Score=38.24 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCCCCCCCCCCCC
Q 003111 589 KRPACKFFYSLQGCRNGDSCIFSHDL 614 (846)
Q Consensus 589 ~~~~C~~f~~~g~C~~G~~C~f~H~~ 614 (846)
+..+|.|-- .|+||.+|+|-|..
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPE 213 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCc
Confidence 466898854 49999999999964
No 108
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=25.30 E-value=40 Score=36.49 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=41.1
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCC-CCcEEEEecCCccHHHHHHHh-hccCCCeEEEEecC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAM-KICKSHRKVILATN 161 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~-~~~~v~~Lhs~l~~~~~~~~~-~~~~~~rKVIlATn 161 (846)
++.+||.+|+.+=+.++.+.+.... .++.+..+||+.+.+++.... ....+...|||+|+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 3579999999987777666654422 357899999999875543222 22234468999996
No 109
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=23.74 E-value=74 Score=31.19 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=41.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC-CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC------CCccccCCCCeEE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN------IAESSVTIPKVAY 174 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~-~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn------IAEtsiTIp~V~y 174 (846)
++.+||.+|+.+=+.++.+.+... ...+.+..++|+.+..++..... ....|||+|+ +....+.+.++.+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS---KGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH---SCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc---CCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 356999999998776666555432 23577888999876655432221 2247999995 1122345667776
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 171 lV 172 (228)
T 3iuy_A 171 LV 172 (228)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 110
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=23.63 E-value=60 Score=34.67 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=29.6
Q ss_pred CCcccCCCCCCcccccccceecccccchhHHHHHHHhcccCcc
Q 003111 290 RALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGML 332 (846)
Q Consensus 290 gALd~~~~~g~~~LT~LGr~ma~LPldP~lsk~LL~~~~~gCl 332 (846)
|+++++ |.+..|++|+.+|.+-|++.-.+++.....-.+.
T Consensus 1 ~~~~~~---~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~ 40 (328)
T 3im1_A 1 GAMEAT---EIISTLSNGLIASHYGVSFFTIQSFVSSLSNTST 40 (328)
T ss_dssp ---CCC---CCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCC
T ss_pred CCccCC---CCccCCchhHHHHHHCCCHHHHHHHHHHhcccCC
Confidence 566663 6678999999999999999999888866554443
No 111
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.46 E-value=64 Score=38.94 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=49.2
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhh-ccCCCeEEEEecCC-CccccCCCCeEEEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMK-ICKSHRKVILATNI-AESSVTIPKVAYVI 176 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~-~~~~~rKVIlATnI-AEtsiTIp~V~yVI 176 (846)
+.+||..|+..=+.+..+.+... ..++.+..+||+++..++..... ...|...|||+|.- ....+.+.++.+||
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 46999999987555555444322 12478999999998877654443 34566789999972 12235677777666
No 112
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=23.23 E-value=2e+02 Score=28.51 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=43.5
Q ss_pred cceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC------CccccCCCCeEE
Q 003111 103 KSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI------AESSVTIPKVAY 174 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI------AEtsiTIp~V~y 174 (846)
+.+||.+|+.+=+.++.+.+... ...+.+..++|+.+..++.... ...-.|||+|.= ....+.+.++.+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 177 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV---QMGCHLLVATPGRLVDFIEKNKISLEFCKY 177 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH---SSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---CCCCCEEEECHHHHHHHHHcCCCChhhCCE
Confidence 47999999988766665554332 2246788889988655543322 123479999961 112234566665
Q ss_pred EE
Q 003111 175 VI 176 (846)
Q Consensus 175 VI 176 (846)
||
T Consensus 178 lV 179 (253)
T 1wrb_A 178 IV 179 (253)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 113
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=22.91 E-value=72 Score=31.09 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=38.3
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCC------CccccCCCCeE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI------AESSVTIPKVA 173 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnI------AEtsiTIp~V~ 173 (846)
++.+||.+|+.+-+.+..+.+... ..++.+..++|+.+..++..... .-.|+|+|.= ....+...++.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIVVGTPGRVFDNIQRRRFRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT----TCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC----CCCEEEECHHHHHHHHHhCCcchhhCc
Confidence 357999999988777666555432 22477888999876555432221 1579999851 12234455666
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 158 ~iV 160 (224)
T 1qde_A 158 MFI 160 (224)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 114
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=22.89 E-value=79 Score=31.48 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC--CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC-----CCc-cccCCCCeE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAE-SSVTIPKVA 173 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~--~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn-----IAE-tsiTIp~V~ 173 (846)
++.+||.+|+.+=+.++.+.+... ...+.+..++|+.+...+...... ...|||+|+ ... ..+.+.++.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 178 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER---GVEICIATPGRLIDFLECGKTNLRRTT 178 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---CCSEEEECHHHHHHHHHHTSCCCTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---CCCEEEECHHHHHHHHHcCCCCccccc
Confidence 356999999998766665544331 124778889999887765443322 247999995 211 234566777
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 179 ~lV 181 (242)
T 3fe2_A 179 YLV 181 (242)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 115
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=22.51 E-value=1.2e+02 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=38.8
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCC---CCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPL---SSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~---~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
.+.+||.+|+.+=+.+..+.+... ...+.+..++|+.+..++....+ ...|+|+|.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~Iiv~Tp 150 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK----KCHIAVGSP 150 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT----SCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc----CCCEEEECH
Confidence 357999999988776666555432 23578889999988766544332 347888886
No 116
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=20.52 E-value=94 Score=30.83 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=38.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC-----CCc-cccCCCCeE
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAE-SSVTIPKVA 173 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn-----IAE-tsiTIp~V~ 173 (846)
++.+||.+|+.+-+.++.+.+.... ..+.+..++|+.....+.. ....+...|+|+|+ ... ..+...++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ--KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHH--HHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 3579999999987776666554322 2467778888865444322 11233357999993 222 234456666
Q ss_pred EEE
Q 003111 174 YVI 176 (846)
Q Consensus 174 yVI 176 (846)
+||
T Consensus 176 ~lV 178 (237)
T 3bor_A 176 MFV 178 (237)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=20.27 E-value=1.6e+02 Score=29.59 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=37.1
Q ss_pred cceEEEcCcHHHHHHHHHHhcCCC--CCcEEEEecCCccHHHHHHHhhccCCCeEEEEecC
Q 003111 103 KSILVFLPTYYALEQQWHLMKPLS--SFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 161 (846)
Q Consensus 103 G~ILVFLPg~~eI~~~~~~L~~~~--~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATn 161 (846)
+.+||.+|+.+=+.++.+.+.... ..+.+..++|+.+..++..... +.-.|||+|+
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~I~v~Tp 169 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---KKPHIIIATP 169 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---TCCSEEEECH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---CCCCEEEECH
Confidence 469999999887666665553321 2367888999987665443322 2347999985
Done!