BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003112
(846 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 779 LLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 834
+ S+ GWG + + ++ EY GE+I+ EA++RG+ YD + ++LF+L+
Sbjct: 144 IFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLD 199
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
C+N R+ L R+ GWG ++ + ++ EY GELIS EAD R
Sbjct: 115 CKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV------R 168
Query: 825 ENSSFLFNLNDQ 836
E+ S+LF+L+++
Sbjct: 169 EDDSYLFDLDNK 180
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
C+N R+ L R+ GWG ++ + ++ EY GELIS EAD R
Sbjct: 117 CKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV------R 170
Query: 825 ENSSFLFNLNDQ 836
E+ S+LF+L+++
Sbjct: 171 EDDSYLFDLDNK 182
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 135 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 188
Query: 825 ENSSFLFNLNDQ 836
E S+LF+L+++
Sbjct: 189 EEDSYLFDLDNK 200
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 134 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 187
Query: 825 ENSSFLFNLNDQ 836
E S+LF+L+++
Sbjct: 188 EEDSYLFDLDNK 199
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 136 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 189
Query: 825 ENSSFLFNLNDQ 836
E S+LF+L+++
Sbjct: 190 EEDSYLFDLDNK 201
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 824
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 110 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 163
Query: 825 ENSSFLFNLNDQ 836
E S+LF+L+++
Sbjct: 164 EEDSYLFDLDNK 175
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 778 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-FLFNLNDQ 836
V + RS + G G F K ++ E + EY G +I + DKR K YD + ++F ++D
Sbjct: 54 VGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDS 113
Query: 837 ATYIAHLY 844
A ++
Sbjct: 114 EVVDATMH 121
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 764 ECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 823
EC N + + ++ GWG ++ Y GE+I+ EA KR K YD
Sbjct: 125 ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYD 184
Query: 824 RENSSFLFNLN 834
+ ++LF+L+
Sbjct: 185 DDGITYLFDLD 195
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 712 FRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPD-----QKGDNYECR 766
F GC C K+ C C C D + C S G + V + + D+ CR
Sbjct: 59 FPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDH--CR 116
Query: 767 NMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN 826
N + ++ GWG + K ++ EY GE++ E +R + + +
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSD 176
Query: 827 SSFLFNLNDQA 837
S+++ + +
Sbjct: 177 SNYIIAIREHV 187
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 765 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR 818
C+N V + R+ GWG K + K E++ EY GELI E R
Sbjct: 81 CQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRAR 134
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 764 ECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR--GKI 821
+C N + + R+ GWG ++ + +++ Y GE+I+ EAD+R
Sbjct: 121 DCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAEST 180
Query: 822 YDRENSSFLFNLN 834
R +LF L+
Sbjct: 181 IARRKDVYLFALD 193
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 36 LSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLT 95
++ ++ L QV D + Q R+ K L G T+ L L + N I+T D+L+
Sbjct: 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST--DLKLLGKGNIIISTPEKWDILS 1035
Query: 96 KRQREALGVQNGIDVSSGDRDSHISQEDGYASTAV-----YGSSNPTKNIIRPIKL 146
+R ++ VQN I++ D I E+G + Y SS I RPI++
Sbjct: 1036 RRWKQRKNVQN-INLFVVDEVHLIGGENGPVLEVICSRMRYISS----QIERPIRI 1086
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 37/133 (27%)
Query: 703 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDN 762
GC C NR ++C CPC ++ C+ + R+ W+ C
Sbjct: 37 GCVDDCLNRM-----IFAECSPNTCPC--GEQCCNQRIQRHEWVQC-------------- 75
Query: 763 YECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRG-KI 821
+ R++ GWG K + +++ EY GE++S +E R +
Sbjct: 76 ---------------LERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQ 120
Query: 822 YDRENSSFLFNLN 834
Y + + NL+
Sbjct: 121 YHNHSDHYCLNLD 133
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 36 LSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLT 95
++ ++ L QV D + Q R+ K L G T+ L L + N I+T D+L+
Sbjct: 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST--DLKLLGKGNIIISTPEKWDILS 1035
Query: 96 KRQREALGVQNGIDVSSGDRDSHISQEDGYASTAV-----YGSSNPTKNIIRPIKL 146
+R ++ VQN I++ D I E+G + Y SS I RPI++
Sbjct: 1036 RRWKQRKNVQN-INLFVVDEVHLIGGENGPVLEVICSRMRYISS----QIERPIRI 1086
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 783 SDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR-ENSSFLF 831
++ GWG + + ++ EY GE++ H+E R K Y R +N + F
Sbjct: 124 TEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYF 173
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 720 SQCRSRQCPCFAADRECDPDVCRNCWISCGD----GSLGVPDQKGDNY 763
+QC ++ CF+A +EC+ + RN + + G +P KG +Y
Sbjct: 333 TQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDY 380
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 416 PSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSR 475
P ++++V + + + +R+ E+A Q ++KK+A+ D +V +SR
Sbjct: 151 PGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVL------------ESSR 198
Query: 476 KENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDS 535
E A +T KK ++ S L+ +S ++++NP
Sbjct: 199 MWREIAE-------------ETAKKYPDVELSHMLVD-----STSMQLIANPGQF----- 235
Query: 536 LRKDEFVAENMCKQELSDEKSWKTIEKGLF 565
D V ENM LSDE S T G+
Sbjct: 236 ---DVIVTENMFGDILSDEASVITGSLGML 262
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 416 PSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSR 475
P ++++V + + + +R+ E+A Q ++KK+A+ D +V +SR
Sbjct: 151 PGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVL------------ESSR 198
Query: 476 KENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDS 535
E A +T KK ++ S L+ +S ++++NP
Sbjct: 199 MWREIAE-------------ETAKKYPDVELSHMLVD-----STSMQLIANPGQF----- 235
Query: 536 LRKDEFVAENMCKQELSDEKSWKTIEKGLF 565
D V ENM LSDE S T G+
Sbjct: 236 ---DVIVTENMFGDILSDEASVITGSLGML 262
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 777 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKR 818
RV + S +S G G F K +VG + + Y G I+H+E D R
Sbjct: 158 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR 201
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 777 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKR 818
RV + S +S G G F K +VG + + Y G I+H+E D R
Sbjct: 107 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR 150
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 777 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKR 818
RV + S +S G G F K +VG + + Y G I+H+E D R
Sbjct: 105 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR 148
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 777 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKR 818
RV + S +S G G F K +VG + + Y G I+H+E D R
Sbjct: 108 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,431,547
Number of Sequences: 62578
Number of extensions: 919269
Number of successful extensions: 1999
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 82
length of query: 846
length of database: 14,973,337
effective HSP length: 107
effective length of query: 739
effective length of database: 8,277,491
effective search space: 6117065849
effective search space used: 6117065849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)