Query 003112
Match_columns 846
No_of_seqs 302 out of 1107
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 17:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 4E-110 8E-115 934.5 23.2 604 45-846 51-664 (739)
2 KOG4442 Clathrin coat binding 99.9 1.1E-23 2.3E-28 240.2 9.5 103 727-846 88-192 (729)
3 KOG1082 Histone H3 (Lys9) meth 99.5 8.1E-15 1.8E-19 161.1 8.3 83 764-846 164-271 (364)
4 KOG1080 Histone H3 (Lys4) meth 99.4 2.5E-13 5.4E-18 163.8 5.5 72 775-846 865-938 (1005)
5 KOG1083 Putative transcription 98.9 3.7E-10 7.9E-15 134.4 0.5 83 764-846 1165-1249(1306)
6 smart00317 SET SET (Su(var)3-9 98.6 1.1E-07 2.3E-12 85.0 8.2 69 778-846 2-72 (116)
7 KOG1085 Predicted methyltransf 98.5 1.1E-07 2.3E-12 101.7 6.7 75 770-844 250-329 (392)
8 KOG1141 Predicted histone meth 98.2 3.2E-07 6.9E-12 107.8 0.7 88 734-834 767-854 (1262)
9 COG2940 Proteins containing SE 97.3 8.7E-05 1.9E-09 85.2 1.5 83 764-846 320-404 (480)
10 KOG1079 Transcriptional repres 96.3 0.0048 1E-07 72.9 5.7 137 39-216 15-152 (739)
11 smart00570 AWS associated with 95.8 0.0029 6.3E-08 52.8 0.4 36 720-775 16-51 (51)
12 KOG1171 Metallothionein-like p 94.1 0.016 3.6E-07 65.7 0.6 65 676-742 131-246 (406)
13 PF00249 Myb_DNA-binding: Myb- 94.0 0.079 1.7E-06 42.6 4.2 46 204-251 1-48 (48)
14 PF03638 TCR: Tesmin/TSO1-like 93.2 0.049 1.1E-06 44.0 1.7 31 711-742 2-32 (42)
15 cd00167 SANT 'SWI3, ADA2, N-Co 93.2 0.2 4.4E-06 37.8 5.0 42 556-599 1-43 (45)
16 smart00717 SANT SANT SWI3, AD 93.2 0.21 4.6E-06 38.2 5.1 43 555-599 2-45 (49)
17 smart00717 SANT SANT SWI3, AD 93.2 0.1 2.2E-06 40.0 3.3 45 205-251 2-47 (49)
18 PF13921 Myb_DNA-bind_6: Myb-l 92.2 0.2 4.3E-06 41.7 4.1 42 207-251 1-44 (60)
19 PF00856 SET: SET domain; Int 92.0 0.14 3E-06 47.4 3.3 31 787-817 1-31 (162)
20 cd00167 SANT 'SWI3, ADA2, N-Co 90.1 0.34 7.4E-06 36.5 3.2 43 207-251 2-45 (45)
21 KOG1141 Predicted histone meth 87.6 0.8 1.7E-05 56.1 5.4 54 763-816 992-1053(1262)
22 PF00249 Myb_DNA-binding: Myb- 77.0 6.3 0.00014 31.7 5.2 43 555-598 2-45 (48)
23 PF13921 Myb_DNA-bind_6: Myb-l 69.2 10 0.00022 31.5 4.9 41 557-599 1-41 (60)
24 PF03638 TCR: Tesmin/TSO1-like 68.3 3.2 7E-05 33.8 1.6 37 675-712 2-40 (42)
25 TIGR01557 myb_SHAQKYF myb-like 67.1 14 0.0003 31.7 5.3 45 555-600 4-53 (57)
26 PF09111 SLIDE: SLIDE; InterP 64.3 5.5 0.00012 38.7 2.7 48 204-251 49-110 (118)
27 PF05033 Pre-SET: Pre-SET moti 62.9 4.4 9.5E-05 37.2 1.7 21 675-695 45-67 (103)
28 smart00570 AWS associated with 56.3 4.1 8.9E-05 34.4 0.3 28 684-711 17-44 (51)
29 KOG1081 Transcription factor N 54.4 3.9 8.4E-05 47.9 -0.3 68 763-846 301-370 (463)
30 KOG2461 Transcription factor B 50.7 13 0.00027 43.1 3.0 65 774-843 26-94 (396)
31 PLN03212 Transcription repress 50.0 19 0.00041 39.3 4.0 47 204-253 78-125 (249)
32 PLN03212 Transcription repress 47.1 18 0.00038 39.5 3.3 46 204-251 25-72 (249)
33 KOG3813 Uncharacterized conser 46.9 8.7 0.00019 45.5 1.0 28 783-810 433-460 (640)
34 PF11616 EZH2_WD-Binding: WD r 45.2 26 0.00057 26.9 2.9 26 55-80 1-26 (30)
35 KOG4442 Clathrin coat binding 41.7 14 0.0003 45.3 1.7 35 684-718 83-120 (729)
36 KOG1082 Histone H3 (Lys9) meth 38.4 24 0.00052 39.9 2.8 19 696-714 153-171 (364)
37 KOG4289 Cadherin EGF LAG seven 35.4 41 0.00089 44.6 4.3 38 675-714 1720-1766(2531)
38 PLN03091 hypothetical protein; 33.8 44 0.00095 39.3 4.0 45 204-251 67-112 (459)
39 PF06937 EURL: EURL protein; 33.7 18 0.00039 40.0 0.8 31 144-174 130-168 (285)
40 PF07773 DUF1619: Protein of u 29.9 31 0.00067 37.5 1.9 27 689-715 1-31 (294)
41 TIGR02726 phenyl_P_delta pheny 29.3 59 0.0013 33.1 3.7 48 178-225 22-74 (169)
42 PF08396 Toxin_34: Spider toxi 28.2 42 0.0009 30.6 2.0 44 687-742 13-67 (75)
43 PF14774 FAM177: FAM177 family 26.9 64 0.0014 31.9 3.3 66 174-241 18-97 (123)
44 PLN03091 hypothetical protein; 25.1 52 0.0011 38.8 2.7 46 204-251 14-61 (459)
45 COG5259 RSC8 RSC chromatin rem 23.3 68 0.0015 38.1 3.1 44 553-598 278-322 (531)
46 PF13404 HTH_AsnC-type: AsnC-t 23.1 95 0.0021 24.9 3.0 39 211-251 4-42 (42)
47 KOG4167 Predicted DNA-binding 23.0 1.1E+02 0.0024 38.2 4.9 43 553-597 618-660 (907)
48 PRK09430 djlA Dna-J like membr 22.4 94 0.002 34.0 3.9 52 207-258 146-232 (267)
49 KOG1194 Predicted DNA-binding 21.4 1.1E+02 0.0024 36.3 4.2 53 542-600 361-413 (534)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=3.6e-110 Score=934.50 Aligned_cols=604 Identities=35% Similarity=0.504 Sum_probs=465.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHhhhhcccccccCCCCchhhhHHhhhccccccCcCCCCCCCCCccccccC
Q 003112 45 QVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDG 124 (846)
Q Consensus 45 qi~~eR~~~Ik~k~e~n~~~l~~~t~~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~g~~d~~~~~d~~ 124 (846)
+|+..++.+++++...+|.+...+|+.+- ++..+.... .-+.+.++..+..-|++++|++..+..+.+...+-++
T Consensus 51 ~~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~---~~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~- 125 (739)
T KOG1079|consen 51 KRRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPIN---ELNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD- 125 (739)
T ss_pred hhhcccccccccccccccccccccccccc-Ccccccchh---hhcccccccccccCChhhhcceecccceecccccccc-
Confidence 37777778888888888888888888775 555544432 2224678888899999999998887777655543332
Q ss_pred ccccccccCCCCCccccccccccCCCCCCCcceeeeecccccccccccccccccceecCCCCeeeecCCchhhchhhhhh
Q 003112 125 YASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEK 204 (846)
Q Consensus 125 ~~~~~v~~~s~~~k~~v~~ikLp~v~~lPpyttWi~l~rNqrM~eDqsV~grR~IyYD~~g~EalicSdseee~~eee~k 204 (846)
. |+.|++|.++.|++|++|||+||||||++||+|||+|+||| |.|+|++| ||+|||.+.+|+|
T Consensus 126 ----~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ek 188 (739)
T KOG1079|consen 126 ----E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEK 188 (739)
T ss_pred ----c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhc
Confidence 1 35599999999999999999999999999999999999999 99999999 9999996569999
Q ss_pred cccccchhh-hhHhhhhhcCCcHHHHHHHHhhcC--CChhHHHHHHHHhhhccccC----CCCCCCCCCccccchhhhh-
Q 003112 205 KDFVDSEDY-ILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILSKEESAV----GGSNNGNDEHTMNNFLVKD- 276 (846)
Q Consensus 205 ~~f~e~eD~-~~~~~~~e~g~sd~vl~~l~~~~~--~~~sei~eRy~~L~~~~~~~----~~~~~~~~~~~~~~~l~K~- 276 (846)
++|.|++|. ++|++.+.+|++++||.+|+++|. ++.++|+|||.+|+....+. ++++++ .++.|++.
T Consensus 189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~i-----d~~~ae~~~ 263 (739)
T KOG1079|consen 189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPNI-----DGSSAEPVQ 263 (739)
T ss_pred ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccCC-----CccccChHH
Confidence 999999999 899999999999999999999999 99999999999998554443 333332 24555665
Q ss_pred HHHHhhhcccccccccccccccCcCCCCCccccCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCcccccc
Q 003112 277 LEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFI 356 (846)
Q Consensus 277 l~~aLdSfdnlfCRRClvfDC~lHgcsQ~Li~~~ekq~~~~~~~~d~~pCg~~Cy~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (846)
++++|||||||||||||+|||+||| +|.++||.++...|.++..+..|||+.||.++.+.....
T Consensus 264 r~~~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~--------------- 327 (739)
T KOG1079|consen 264 REQALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKT--------------- 327 (739)
T ss_pred HHhhhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhh---------------
Confidence 9999999999999999999999999 999999999999999999999999999999986543210
Q ss_pred cCCCCCCCccCCccccCCCcccccccccccccccccccCCCCccccccCCCccccccCCCCccccccccccccccchhHH
Q 003112 357 SSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVA 436 (846)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 436 (846)
.+.+. . +.++..|.
T Consensus 328 -m~~~~-~-------------------------------------------------------~~~p~~g~--------- 341 (739)
T KOG1079|consen 328 -MSAVV-S-------------------------------------------------------KCPPIRGD--------- 341 (739)
T ss_pred -hhccc-c-------------------------------------------------------cCCCCcch---------
Confidence 00000 0 00000000
Q ss_pred HHHHHHHHhhhhhhhccccccccCCCCCCccccccccccccccccCCCcccccCCCCCcccccchhhhhccccccccccC
Q 003112 437 ERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVP 516 (846)
Q Consensus 437 ~~~~~~~~k~qk~~~~~d~~s~~~~~~~~~d~~~~s~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 516 (846)
+|||--.++..+| | +.+...++.+..+......+.-.....+.. ..++.++..
T Consensus 342 --------~~qk~~~~~~~~s---------~-----~~~~~~e~~g~~~d~~v~~~~~~~~~~v~~----~~~~~~s~~- 394 (739)
T KOG1079|consen 342 --------IRQKLVKASSMDS---------D-----DEHVEEEDKGHDDDDGVPRGFGGSVNFVGE----DDTSTHSST- 394 (739)
T ss_pred --------hhhhhcccccCCc---------c-----hhhccccccCcccccccccccccccccccC----Ccccccccc-
Confidence 1222111111111 0 112223333333333332221111110000 000000000
Q ss_pred CCCcccccCCCCCCCCCCccchhhHhhhhhhccccCCCCCcchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHHHHHH
Q 003112 517 LGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQY 596 (846)
Q Consensus 517 ~~~~~~~~~~~~~~~~~d~~~~~e~v~~~~~~~e~~~~~~Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~EV~~~ 596 (846)
.-++.+ +. ..+-....+|+++|+.||++|+.+||.|+|+|||+| ++|||++||+|
T Consensus 395 ----~~~c~~-~~------------------~~~~~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l--~~ktC~~v~~~ 449 (739)
T KOG1079|consen 395 ----NSICQN-PV------------------HGKKDTNVEWNGAEKVLFRVGSTLYGTNRCSIARNL--LTKTCRQVYEY 449 (739)
T ss_pred ----cccccC-cc------------------cccCCcccccchhhhHHHHhccccccchhhHHHHHh--cchHHHHHHHH
Confidence 000000 00 001012568999999999999999999999999999 45999999999
Q ss_pred HHhhhhccccccCccchhhcccCCccCCCCCCCCccccchhhHHHhhcccccccccccccchhhHHHhhhccCCCCCCCC
Q 003112 597 MTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQY 676 (846)
Q Consensus 597 m~~~~~~~~~~~~~~~~s~~e~~~k~~~~~~~~~~~~~~rsr~~rrr~r~rklk~~wks~~~~~~~kri~~~kd~~~~~y 676 (846)
++.+........+. .....+++.|.+.+|+.++.|++.+.|+++.++.+| .|
T Consensus 450 ~~~e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~ 501 (739)
T KOG1079|consen 450 EQKEVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NY 501 (739)
T ss_pred hhcchhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ec
Confidence 99876543333211 012345677889999999999999999988877655 37
Q ss_pred CCCCCCCCC--CCCCcccCCCcccccCCCCCccccccCCCcccCCCCccCCCCccccccCccCCCCCcCCcccCCCCCCC
Q 003112 677 NPCGCQTAC--GKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLG 754 (846)
Q Consensus 677 ~PC~h~gpC--~~~C~C~~~g~~CEk~C~C~~~C~nRF~GC~C~~~qC~t~~CpC~~a~rECDPdlC~~C~~sCgd~~~~ 754 (846)
+||+|+++| +..|+|+.+++||||||+|+++|.|||+||+| ++||++++||||+|+|||||++|..||+
T Consensus 502 qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~-------- 572 (739)
T KOG1079|consen 502 QPCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN-------- 572 (739)
T ss_pred CcccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------
Confidence 777777655 68999999999999999999999999999999 8999999999999999999999999985
Q ss_pred CCCCCCCcccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCCCeEEEEcC
Q 003112 755 VPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 834 (846)
Q Consensus 755 ~P~~~~~~~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~~sYLF~Ln 834 (846)
.+..+++...|+|+.+|+++++++++++|.+.|||||+++.+.|++||+||+||+||++||+|||++||.++++|||+|+
T Consensus 573 ~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln 652 (739)
T KOG1079|consen 573 VDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLN 652 (739)
T ss_pred ccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeecc
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEccccCCC
Q 003112 835 DQATYIAHLYFD 846 (846)
Q Consensus 835 ~~~VIDATrKGN 846 (846)
++|||||+++||
T Consensus 653 ~dyviDs~rkGn 664 (739)
T KOG1079|consen 653 NDYVIDSTRKGN 664 (739)
T ss_pred ccceEeeeeecc
Confidence 999999999998
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-23 Score=240.19 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=94.5
Q ss_pred CccccccCccCCCCCcCCcccCCCCCCCCCCCCCCcccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeee
Q 003112 727 CPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYT 806 (846)
Q Consensus 727 CpC~~a~rECDPdlC~~C~~sCgd~~~~~P~~~~~~~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYv 806 (846)
|.|...+.||.|++|..|++ .|+|++||+.+++++.||.+..+||||+|.++|++|+||+||+
T Consensus 88 CiNr~t~iECs~~~C~~cg~-----------------~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~ 150 (729)
T KOG4442|consen 88 CINRMTSIECSDRECPRCGV-----------------YCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYI 150 (729)
T ss_pred ccchhhhcccCCccCCCccc-----------------cccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeec
Confidence 44444677888888987753 8999999999999999999999999999999999999999999
Q ss_pred eeeeCHHHHHHHhhhcccCC--CeEEEEcCCccEEccccCCC
Q 003112 807 GELISHREADKRGKIYDREN--SSFLFNLNDQATYIAHLYFD 846 (846)
Q Consensus 807 GEVIS~eEAdRRgk~Yd~~~--~sYLF~Ln~~~VIDATrKGN 846 (846)
||||+++|+++|.+.|+..+ ++|+|.|.++++||||+|||
T Consensus 151 GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGn 192 (729)
T KOG4442|consen 151 GEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGN 192 (729)
T ss_pred cccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCc
Confidence 99999999999999999875 68999999999999999998
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=8.1e-15 Score=161.08 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=69.7
Q ss_pred cccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccC----CCeEEEE-------
Q 003112 764 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE----NSSFLFN------- 832 (846)
Q Consensus 764 ~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~----~~sYLF~------- 832 (846)
.|.||++|+|...+|+|+++..+||||++.+.|++|+||+||+|||++..|+++|...|... +..++|.
T Consensus 164 ~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (364)
T KOG1082|consen 164 DCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDES 243 (364)
T ss_pred cCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999885333222 2222221
Q ss_pred --------------cCCccEEccccCCC
Q 003112 833 --------------LNDQATYIAHLYFD 846 (846)
Q Consensus 833 --------------Ln~~~VIDATrKGN 846 (846)
....+.|||.+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~ida~~~GN 271 (364)
T KOG1082|consen 244 PVGNTFVAPSLPGGPGRELLIDAKPHGN 271 (364)
T ss_pred cccccccccccccCCCcceEEchhhccc
Confidence 13479999999998
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=2.5e-13 Score=163.82 Aligned_cols=72 Identities=32% Similarity=0.558 Sum_probs=68.8
Q ss_pred cceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCC--CeEEEEcCCccEEccccCCC
Q 003112 775 QQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQATYIAHLYFD 846 (846)
Q Consensus 775 ~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~--~sYLF~Ln~~~VIDATrKGN 846 (846)
.+.|.+++|.+|||||||+++|.+|+||+||+||+|.+--|+.|++.|.+.+ .+|||.+++.+|||||++||
T Consensus 865 kk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gn 938 (1005)
T KOG1080|consen 865 KKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGN 938 (1005)
T ss_pred hhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCc
Confidence 4568999999999999999999999999999999999999999999999885 79999999999999999998
No 5
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=98.88 E-value=3.7e-10 Score=134.39 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=77.0
Q ss_pred cccchHHhhc-ccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHH-hhhcccCCCeEEEEcCCccEEcc
Q 003112 764 ECRNMKLLLK-QQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR-GKIYDRENSSFLFNLNDQATYIA 841 (846)
Q Consensus 764 ~C~Nr~lQrg-~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRR-gk~Yd~~~~sYLF~Ln~~~VIDA 841 (846)
.|.|++||+. ....|.+++....||||.|+++|++|+||+||+||||+.++++.| ...|.....+|+..|..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 4889999876 578899999999999999999999999999999999999999988 56788888999999999999999
Q ss_pred ccCCC
Q 003112 842 HLYFD 846 (846)
Q Consensus 842 TrKGN 846 (846)
+|.||
T Consensus 1245 ~R~~n 1249 (1306)
T KOG1083|consen 1245 PRMGN 1249 (1306)
T ss_pred hhccc
Confidence 99997
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.63 E-value=1.1e-07 Score=84.97 Aligned_cols=69 Identities=30% Similarity=0.564 Sum_probs=60.7
Q ss_pred EEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCCC--eEEEEcCCccEEccccCCC
Q 003112 778 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS--SFLFNLNDQATYIAHLYFD 846 (846)
Q Consensus 778 L~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~~--sYLF~Ln~~~VIDATrKGN 846 (846)
+.+.++..+|+||||..+|++|++|+||+|+++...++..+...|...+. .|+|++...++|||...||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ 72 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGN 72 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCc
Confidence 45677778999999999999999999999999999999888766666654 9999998889999998776
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=101.74 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=62.1
Q ss_pred HhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccC---CC-eEEEEc-CCccEEccccC
Q 003112 770 LLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE---NS-SFLFNL-NDQATYIAHLY 844 (846)
Q Consensus 770 lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~---~~-sYLF~L-n~~~VIDATrK 844 (846)
+..|....+.+..-.++|.||+|...+.+|+||+||.|.+|...||..|++.|... ++ .|+|.. +..|+||||+-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 45555666777767779999999999999999999999999999999999999755 22 566654 56899999974
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.21 E-value=3.2e-07 Score=107.82 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=69.7
Q ss_pred CccCCCCCcCCcccCCCCCCCCCCCCCCcccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHH
Q 003112 734 RECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHR 813 (846)
Q Consensus 734 rECDPdlC~~C~~sCgd~~~~~P~~~~~~~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~e 813 (846)
.||-|.--.+|...|.+ ++..|.||.+|.|.+.++.++++..+|||++...+|.+|.|||-|.|-+++++
T Consensus 767 ~e~~ptg~yEc~k~ckc----------~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~ 836 (1262)
T KOG1141|consen 767 IEIRPTGPYECLKACKC----------CGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQ 836 (1262)
T ss_pred HHhcCCCHHHHHHhhcc----------CcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhh
Confidence 45666555555554432 33599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCeEEEEcC
Q 003112 814 EADKRGKIYDRENSSFLFNLN 834 (846)
Q Consensus 814 EAdRRgk~Yd~~~~sYLF~Ln 834 (846)
-++.-+.+. ..-||.+|+
T Consensus 837 ~sdks~~~~---~~~~~~~id 854 (1262)
T KOG1141|consen 837 ISDKSEYIH---VTRSLLTID 854 (1262)
T ss_pred hchhhhhcc---cchhhhccc
Confidence 998776432 234555554
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.29 E-value=8.7e-05 Score=85.16 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=66.1
Q ss_pred cccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCCCeEEEE-cCC-ccEEcc
Q 003112 764 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFN-LND-QATYIA 841 (846)
Q Consensus 764 ~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~~sYLF~-Ln~-~~VIDA 841 (846)
.+.|...+........+..+...|||+||++.|++|+||.||.|+++...++..|...|+..+..+.|. +.. ..++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 399 (480)
T COG2940 320 ELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDS 399 (480)
T ss_pred chhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhh
Confidence 444444445555667788888999999999999999999999999999999999998886666554444 443 789999
Q ss_pred ccCCC
Q 003112 842 HLYFD 846 (846)
Q Consensus 842 TrKGN 846 (846)
...||
T Consensus 400 ~~~g~ 404 (480)
T COG2940 400 QKAGD 404 (480)
T ss_pred hhccc
Confidence 88886
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=96.33 E-value=0.0048 Score=72.94 Aligned_cols=137 Identities=20% Similarity=0.119 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHhhhhcccccccCCCCchhhhHHhhhccccccCcCCCCCCCCCc
Q 003112 39 IDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSH 118 (846)
Q Consensus 39 i~~LKkqi~~eR~~~Ik~k~e~n~~~l~~~t~~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~g~~d~~ 118 (846)
++|+|| ..+.+.+|.+...|+.....-+..+...... |+..|+...--.+-....++..
T Consensus 15 ~rq~~r---~~~~~~~K~~~~~~~~~~~e~i~~~~~E~k~------------------~~~~~~~~~~~~~~~~r~k~~~ 73 (739)
T KOG1079|consen 15 SRQRKR---VREADEGKSAKSKNPADRLEKIKILNCEWKK------------------RRLKPVRSAKEVDGDIRVKVDL 73 (739)
T ss_pred HHHHHH---HHHHhhhhhhcccCHHHHHHHHHHHHHHHhh------------------hhcccccccccccccccccccc
Confidence 677777 5566667777666766665555555432221 3333443332222222222222
Q ss_pred cccccCccccccccCCCCCccccccccccCCCCCCCcceeeeecccccccccccccccccceecCCCCeee-ecCCchhh
Q 003112 119 ISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEAL-ICSDSEEE 197 (846)
Q Consensus 119 ~~~d~~~~~~~v~~~s~~~k~~v~~ikLp~v~~lPpyttWi~l~rNqrM~eDqsV~grR~IyYD~~g~Eal-icSdseee 197 (846)
.. .++. ++-+.++.-.+..|..+|.|++|.++++|+ |++|.+|++ +|+| -|.|-+ |.-+--|
T Consensus 74 ~~--------~~~~---~~~~~~~i~~~n~~~~v~~~~~~~~~q~nf-mv~~~~~~~--~ip~--~~~~v~~~k~~~ie- 136 (739)
T KOG1079|consen 74 DT--------SIFD---FPSQKSPINELNAVAQVPIMYSWPPLQQNF-MVEDETVLH--NIPY--MGDEVLDIKGPFIE- 136 (739)
T ss_pred cc--------cccc---CcccccchhhhcccccccccccCChhhhcc-eecccceec--cccc--ccccccccccchhh-
Confidence 10 1121 122334556789999999999999999999 999999999 9999 444443 3322222
Q ss_pred chhhhhhcccccchhhhhH
Q 003112 198 VIEEEEKKDFVDSEDYILR 216 (846)
Q Consensus 198 ~~eee~k~~f~e~eD~~~~ 216 (846)
|=.+.+|--.-|+.-+
T Consensus 137 ---el~~y~~~v~~dr~~~ 152 (739)
T KOG1079|consen 137 ---ELIKYDGKVHGDRNQR 152 (739)
T ss_pred ---hcccccceeecccccc
Confidence 2223555555555533
No 11
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=95.79 E-value=0.0029 Score=52.84 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=28.2
Q ss_pred CCccCCCCccccccCccCCCCCcCCcccCCCCCCCCCCCCCCcccccchHHhhccc
Q 003112 720 SQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQ 775 (846)
Q Consensus 720 ~qC~t~~CpC~~a~rECDPdlC~~C~~sCgd~~~~~P~~~~~~~~C~Nr~lQrg~~ 775 (846)
..|+ ..|.++++..|| |..|+ |+ ..|+|++||++++
T Consensus 16 ~~Cg-sdClNR~l~~EC-~~~C~-~G-----------------~~C~NqrFqk~~y 51 (51)
T smart00570 16 GACG-SDCLNRMLLIEC-SSDCP-CG-----------------SYCSNQRFQKRQY 51 (51)
T ss_pred CCcc-hHHHHHHHhhhc-CCCCC-CC-----------------cCccCcccccCcC
Confidence 3576 568889999999 68886 43 2899999998763
No 12
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.016 Score=65.72 Aligned_cols=65 Identities=34% Similarity=0.991 Sum_probs=53.3
Q ss_pred CCCCCCC-CCCC-CCCcccCCCcccccCCCCCccccccC-----------------------------------------
Q 003112 676 YNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF----------------------------------------- 712 (846)
Q Consensus 676 y~PC~h~-gpC~-~~C~C~~~g~~CEk~C~C~~~C~nRF----------------------------------------- 712 (846)
-.+|+|. ..|. ..|.|+..|+||-.+|.|- +|.|..
T Consensus 131 k~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 131 KKKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred ccCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 3455543 4454 4899999999999999998 688873
Q ss_pred --------CCcccCCCCccCCCCccccccCccCCCCCc
Q 003112 713 --------RGCHCAKSQCRSRQCPCFAADRECDPDVCR 742 (846)
Q Consensus 713 --------~GC~C~~~qC~t~~CpC~~a~rECDPdlC~ 742 (846)
.||+|++..|..+-|-||.++.-|. +-|+
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS-~nCk 246 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECYQAGVLCS-SNCK 246 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHHhcCCCcc-cccc
Confidence 7999999999999999999999997 4565
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.05 E-value=0.079 Score=42.56 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=39.3
Q ss_pred hcccccchhhhhHhhhhhcCCcHHHHHHHHhhcC--CChhHHHHHHHHhh
Q 003112 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILS 251 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~--~~~sei~eRy~~L~ 251 (846)
|..|++.||.+|..++++||.. -...||+.|+ +|+.+++.||..|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998 6778888888 99999999999874
No 14
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=93.25 E-value=0.049 Score=44.00 Aligned_cols=31 Identities=45% Similarity=1.213 Sum_probs=27.7
Q ss_pred cCCCcccCCCCccCCCCccccccCccCCCCCc
Q 003112 711 RFRGCHCAKSQCRSRQCPCFAADRECDPDVCR 742 (846)
Q Consensus 711 RF~GC~C~~~qC~t~~CpC~~a~rECDPdlC~ 742 (846)
...||+|+++.|....|.||++++.|.+. |.
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~-C~ 32 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPN-CK 32 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCC-cc
Confidence 46799999999999999999999999974 64
No 15
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=93.20 E-value=0.2 Score=37.79 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=37.6
Q ss_pred CcchhhHHHHHHHHHhhC-CcchHHHHHhhCCCCcHHHHHHHHHh
Q 003112 556 SWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 599 (846)
Q Consensus 556 ~Wt~~E~~L~~k~~eifg-~NsClIAr~Ll~g~KtC~EV~~~m~~ 599 (846)
.||..|..+|..++..|| .+...||+.+ +.+|-.+|-.+...
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHHH
Confidence 599999999999999999 8999999987 66999999887653
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=93.18 E-value=0.21 Score=38.18 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCcchhhHHHHHHHHHhhC-CcchHHHHHhhCCCCcHHHHHHHHHh
Q 003112 555 KSWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 599 (846)
Q Consensus 555 ~~Wt~~E~~L~~k~~eifg-~NsClIAr~Ll~g~KtC~EV~~~m~~ 599 (846)
..|++.|..+|..++..|| .+...||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4799999999999999999 9999999988 67999999887764
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=93.15 E-value=0.1 Score=39.99 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.3
Q ss_pred cccccchhhhhHhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 003112 205 KDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (846)
Q Consensus 205 ~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~-~~~sei~eRy~~L~ 251 (846)
..|++.||.+|-..+.+||.. -+..|+.+|+ +++.+|+.||..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 468899999999999999952 3788888888 99999999999876
No 18
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=92.25 E-value=0.2 Score=41.66 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.4
Q ss_pred cccchhhhhHhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHH-hh
Q 003112 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEI-LS 251 (846)
Q Consensus 207 f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~-~~~sei~eRy~~-L~ 251 (846)
|++.||.+|....++||.+ ...||++|+ +++.+|+.||.. |.
T Consensus 1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND---WKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCcC---HHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 4677999999999999963 888999999 999999999999 75
No 19
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=91.98 E-value=0.14 Score=47.37 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.0
Q ss_pred CceeeeccccCCCceeEeeeeeeeCHHHHHH
Q 003112 787 GWGAFLKNSVGKHEYLGEYTGELISHREADK 817 (846)
Q Consensus 787 GwGLFA~EdIkKGeFI~EYvGEVIS~eEAdR 817 (846)
|+||||.++|++|+.|+++.+-+|+..++..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~ 31 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSP 31 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHC
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhh
Confidence 8999999999999999999999999988855
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.08 E-value=0.34 Score=36.55 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=36.8
Q ss_pred cccchhhhhHhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 003112 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (846)
Q Consensus 207 f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~-~~~sei~eRy~~L~ 251 (846)
|++.||.+|-..+.++|.. -...|+++|+ ++..+|+.||..+.
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 6788999999999999952 3788888998 99999999998763
No 21
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=87.56 E-value=0.8 Score=56.09 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=46.0
Q ss_pred ccccchHHhhcccceEEE--------EEecccCceeeeccccCCCceeEeeeeeeeCHHHHH
Q 003112 763 YECRNMKLLLKQQQRVLL--------GRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREAD 816 (846)
Q Consensus 763 ~~C~Nr~lQrg~~kkL~V--------~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAd 816 (846)
..|.|+.+|.+...+.++ +++..-|||+.+..||+.-.||+||+|-..+..-++
T Consensus 992 ~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~ 1053 (1262)
T KOG1141|consen 992 RKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLAD 1053 (1262)
T ss_pred ccccchhhhcCCccceeeeecccccccccccccccccccccCCCCcccccccCCCCchhhHH
Confidence 469999999998776654 445567999999999999999999999999988774
No 22
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=76.97 E-value=6.3 Score=31.65 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=34.8
Q ss_pred CCcchhhHHHHHHHHHhhCCc-chHHHHHhhCCCCcHHHHHHHHH
Q 003112 555 KSWKTIEKGLFDKGVEIFGRN-SCLIARNLLNGLKTCWEVFQYMT 598 (846)
Q Consensus 555 ~~Wt~~E~~L~~k~~eifg~N-sClIAr~Ll~g~KtC~EV~~~m~ 598 (846)
..||+-|..+|..++..||.+ -=.||..+. +.+|=.|+-.+.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP-GGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS-SSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 479999999999999999998 999999772 3788777776654
No 23
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=69.20 E-value=10 Score=31.45 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHHHHHHHHh
Q 003112 557 WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (846)
Q Consensus 557 Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~EV~~~m~~ 599 (846)
||..|..++..++..||.+-..||..| |.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999987 66777777765554
No 24
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=68.29 E-value=3.2 Score=33.78 Aligned_cols=37 Identities=32% Similarity=0.923 Sum_probs=30.6
Q ss_pred CCCCCCCC-CCCC-CCCcccCCCcccccCCCCCccccccC
Q 003112 675 QYNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF 712 (846)
Q Consensus 675 ~y~PC~h~-gpC~-~~C~C~~~g~~CEk~C~C~~~C~nRF 712 (846)
+..+|.+. ..|. ..|.|+..+.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 34688885 7786 5899999999999999996 698864
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=67.09 E-value=14 Score=31.66 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=37.6
Q ss_pred CCcchhhHHHHHHHHHhhCC-cc---hHHHHHhhCCCC-cHHHHHHHHHhh
Q 003112 555 KSWKTIEKGLFDKGVEIFGR-NS---CLIARNLLNGLK-TCWEVFQYMTCS 600 (846)
Q Consensus 555 ~~Wt~~E~~L~~k~~eifg~-Ns---ClIAr~Ll~g~K-tC~EV~~~m~~~ 600 (846)
-.||+-|-.+|..+++.||. |. =.|+.++. .++ |-.+|-.++++.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~-~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV-VDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC-CCCCCHHHHHHHHHHH
Confidence 46999999999999999998 76 77888662 356 899999998864
No 26
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=64.25 E-value=5.5 Score=38.73 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=35.2
Q ss_pred hcccccchhhhhHhhhhhcCC-----cHHHHHHHHh---------hcCCChhHHHHHHHHhh
Q 003112 204 KKDFVDSEDYILRMTIKEVGL-----SDATLESLAQ---------CFSRSPSEVKARYEILS 251 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~-----sd~vl~~l~~---------~~~~~~sei~eRy~~L~ 251 (846)
++.|++.||++|=+.+-+||+ =|.|...|.. +-++|+.||+.|...|-
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 577999999999999999999 2445444443 23499999999999986
No 27
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=62.93 E-value=4.4 Score=37.15 Aligned_cols=21 Identities=29% Similarity=0.868 Sum_probs=11.1
Q ss_pred CCCCCCCCCCC--CCCCcccCCC
Q 003112 675 QYNPCGCQTAC--GKQCPCLLNG 695 (846)
Q Consensus 675 ~y~PC~h~gpC--~~~C~C~~~g 695 (846)
...-|+|.+.| ...|.|....
T Consensus 45 ~~~~C~C~~~C~~~~~C~C~~~~ 67 (103)
T PF05033_consen 45 FLQGCDCSGDCSNPSNCECLQRN 67 (103)
T ss_dssp GTS----SSSSTCTTTSHHHCCT
T ss_pred cCccCccCCCCCCCCCCcCcccc
Confidence 34468887778 4678887643
No 28
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=56.26 E-value=4.1 Score=34.41 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=17.5
Q ss_pred CCCCCCcccCCCcccccCCCCCcccccc
Q 003112 684 ACGKQCPCLLNGTCCEKYCGCPKSCKNR 711 (846)
Q Consensus 684 pC~~~C~C~~~g~~CEk~C~C~~~C~nR 711 (846)
+|+.+|-....-+.|...|.|+..|.|+
T Consensus 17 ~CgsdClNR~l~~EC~~~C~~G~~C~Nq 44 (51)
T smart00570 17 ACGSDCLNRMLLIECSSDCPCGSYCSNQ 44 (51)
T ss_pred CcchHHHHHHHhhhcCCCCCCCcCccCc
Confidence 4555566666666666666666666654
No 29
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=54.39 E-value=3.9 Score=47.94 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred ccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccC--CCeEEEEcCCccEEc
Q 003112 763 YECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE--NSSFLFNLNDQATYI 840 (846)
Q Consensus 763 ~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~--~~sYLF~Ln~~~VID 840 (846)
..|.|+.+....... -.+ +|..+|.++ +|++|+..|...|...-... ...|+..+..+.+||
T Consensus 301 ~~~~~~~~sk~~~~e-------~~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id 364 (463)
T KOG1081|consen 301 ERCHNQQFSKESYPE-------PQK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIID 364 (463)
T ss_pred cccccchhhhhcccc-------cch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccc
Confidence 488998887766555 112 888899999 99999999998887543333 234545555555999
Q ss_pred cccCCC
Q 003112 841 AHLYFD 846 (846)
Q Consensus 841 ATrKGN 846 (846)
|.++||
T Consensus 365 ~~~~~n 370 (463)
T KOG1081|consen 365 AGPKGN 370 (463)
T ss_pred cccccc
Confidence 999997
No 30
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=50.67 E-value=13 Score=43.08 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=44.9
Q ss_pred ccceEEEEEecc--cCceeeeccccCCCceeEeeeeee-eCHHHHHHHhhhcccCCCeEEEEcC-CccEEcccc
Q 003112 774 QQQRVLLGRSDV--SGWGAFLKNSVGKHEYLGEYTGEL-ISHREADKRGKIYDRENSSFLFNLN-DQATYIAHL 843 (846)
Q Consensus 774 ~~kkL~V~kS~i--kGwGLFA~EdIkKGeFI~EYvGEV-IS~eEAdRRgk~Yd~~~~sYLF~Ln-~~~VIDATr 843 (846)
....+.|+.|.+ .|.||++...|.+|.--+=|+||+ ++.++ +..+....-++|.-+ .-++||++-
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~-----~~~n~~y~W~I~~~d~~~~~iDg~d 94 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS-----KSANNRYMWEIFSSDNGYEYIDGTD 94 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc-----ccccCcceEEEEeCCCceEEeccCC
Confidence 567888888887 689999999999999999999998 32221 111111233445443 457888863
No 31
>PLN03212 Transcription repressor MYB5; Provisional
Probab=50.00 E-value=19 Score=39.34 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=38.4
Q ss_pred hcccccchhhhhHhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhhhc
Q 003112 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILSKE 253 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~-~~~sei~eRy~~L~~~ 253 (846)
|..|++.||.+|-...+++|-. -..||++|+ +|.-+|+.||+.+.+.
T Consensus 78 kgpWT~EED~lLlel~~~~GnK---Ws~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred cCCCChHHHHHHHHHHHhcccc---HHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 4569999999999889999953 567777776 9999999999876633
No 32
>PLN03212 Transcription repressor MYB5; Provisional
Probab=47.10 E-value=18 Score=39.54 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=38.3
Q ss_pred hcccccchhhhhHhhhhhcCCcHHHHHHHHhhc--CCChhHHHHHHHHhh
Q 003112 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCF--SRSPSEVKARYEILS 251 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~--~~~~sei~eRy~~L~ 251 (846)
|.-|+..||.+|..++++||... ...||+.+ +++.-+..+||.+.-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGR--WRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCccc--HHHHHHhhhcCCCcchHHHHHHHhh
Confidence 45699999999999999999653 56778766 599999999997655
No 33
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=46.85 E-value=8.7 Score=45.49 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=18.7
Q ss_pred ecccCceeeeccccCCCceeEeeeeeee
Q 003112 783 SDVSGWGAFLKNSVGKHEYLGEYTGELI 810 (846)
Q Consensus 783 S~ikGwGLFA~EdIkKGeFI~EYvGEVI 810 (846)
.+.-+-|+||..+=.-=..|.+|.-|-.
T Consensus 433 ~~lp~sg~~as~s~sslS~i~~~~se~~ 460 (640)
T KOG3813|consen 433 TKLPVSGVYASRSRSSLSDIRESTSETT 460 (640)
T ss_pred cCCCCCcccccccccchhhhhhhccccc
Confidence 3445788888877666666777765554
No 34
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=45.19 E-value=26 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHhhhhHHHHHHHhhHHhhhhc
Q 003112 55 QRRVEKNRQKLIGVTNHLYRLSLERR 80 (846)
Q Consensus 55 k~k~e~n~~~l~~~t~~l~~~~~~r~ 80 (846)
|..|.+||+|++..|..|....+.|+
T Consensus 1 Kalf~sNr~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 1 KALFSSNRQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CchhHhhHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999976555543
No 35
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.71 E-value=14 Score=45.25 Aligned_cols=35 Identities=37% Similarity=0.802 Sum_probs=27.1
Q ss_pred CCCCCCcccCCCccccc-CCC-CCccccc-cCCCcccC
Q 003112 684 ACGKQCPCLLNGTCCEK-YCG-CPKSCKN-RFRGCHCA 718 (846)
Q Consensus 684 pC~~~C~C~~~g~~CEk-~C~-C~~~C~n-RF~GC~C~ 718 (846)
.|+.+|-|....+.|.- .|. |+..|.| ||+-|.|+
T Consensus 83 ~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA 120 (729)
T KOG4442|consen 83 ACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYA 120 (729)
T ss_pred ccCccccchhhhcccCCccCCCccccccchhhhhhccC
Confidence 35678888888888888 888 8888866 67766664
No 36
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=38.38 E-value=24 Score=39.95 Aligned_cols=19 Identities=37% Similarity=0.836 Sum_probs=15.9
Q ss_pred cccccCCCCCccccccCCC
Q 003112 696 TCCEKYCGCPKSCKNRFRG 714 (846)
Q Consensus 696 ~~CEk~C~C~~~C~nRF~G 714 (846)
..|...|+|..+|.||+..
T Consensus 153 ~EC~~~C~C~~~C~nRv~q 171 (364)
T KOG1082|consen 153 FECSVACGCHPDCANRVVQ 171 (364)
T ss_pred cccccCCCCCCcCcchhhc
Confidence 4688999999999999854
No 37
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=35.39 E-value=41 Score=44.56 Aligned_cols=38 Identities=32% Similarity=0.788 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCC-------CCcccC--CCcccccCCCCCccccccCCC
Q 003112 675 QYNPCGCQTACGK-------QCPCLL--NGTCCEKYCGCPKSCKNRFRG 714 (846)
Q Consensus 675 ~y~PC~h~gpC~~-------~C~C~~--~g~~CEk~C~C~~~C~nRF~G 714 (846)
+..||.++|.|.. .|.|.. .|.+||.-- +..|++-|=|
T Consensus 1720 ~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~--dq~CPrGWWG 1766 (2531)
T KOG4289|consen 1720 SLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRA--DQPCPRGWWG 1766 (2531)
T ss_pred cccccccCceeecCCCCCceeEECCCcccCcchhhhc--cCCCCCcccC
Confidence 5678888888852 577765 345555422 3345555533
No 38
>PLN03091 hypothetical protein; Provisional
Probab=33.80 E-value=44 Score=39.35 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=37.5
Q ss_pred hcccccchhhhhHhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 003112 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~~-~~~sei~eRy~~L~ 251 (846)
|..|+..||.+|....+++|-. ...||.+|+ |+.-+|+.||..+.
T Consensus 67 KgpWT~EED~lLLeL~k~~GnK---WskIAk~LPGRTDnqIKNRWnslL 112 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCL 112 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcc---hHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5579999999999999999963 567777775 99999999998754
No 39
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.71 E-value=18 Score=39.96 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=24.9
Q ss_pred ccccCCC-CCCCcc-eeeee------ccccccccccccc
Q 003112 144 IKLNDNK-RLPPYT-TWIFL------DRNQRMTEDQSVM 174 (846)
Q Consensus 144 ikLp~v~-~lPpyt-tWi~l------~rNqrM~eDqsV~ 174 (846)
.-||... .+|.|+ .|+-. ++.|||.|+...-
T Consensus 130 KllpQ~dsqvP~Ys~~w~~~~~~~~s~~~q~~LE~~~~~ 168 (285)
T PF06937_consen 130 KLLPQFDSQVPRYSAKWIDGSAGGLSNCTQRILEQREAT 168 (285)
T ss_pred ccCcccccCCCccchhhhcccccCCCcchhHHhcccccc
Confidence 4578888 999999 89965 5789999887753
No 40
>PF07773 DUF1619: Protein of unknown function (DUF1619); InterPro: IPR011677 This is a group of sequences derived from hypothetical eukaryotic proteins. The region in question is approximately 330 residues long and has a cysteine rich N terminus.
Probab=29.86 E-value=31 Score=37.46 Aligned_cols=27 Identities=37% Similarity=1.067 Sum_probs=21.7
Q ss_pred CcccCCCcccccCCCCCcccc----ccCCCc
Q 003112 689 CPCLLNGTCCEKYCGCPKSCK----NRFRGC 715 (846)
Q Consensus 689 C~C~~~g~~CEk~C~C~~~C~----nRF~GC 715 (846)
|+|-.....|+..|-|+++|. ..|.+|
T Consensus 1 C~CDLt~~~CD~nCCCD~DC~~~~~~~Fs~C 31 (294)
T PF07773_consen 1 CPCDLTPGQCDVNCCCDPDCSSSDRSVFSSC 31 (294)
T ss_pred CCCcCCCCccCCCCCCCcccChhhhhhcccc
Confidence 778877788999999999995 566555
No 41
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=29.31 E-value=59 Score=33.13 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred cceecCCCCeeeecCCchhhchh--hhhh---cccccchhhhhHhhhhhcCCc
Q 003112 178 RIYYDQNGGEALICSDSEEEVIE--EEEK---KDFVDSEDYILRMTIKEVGLS 225 (846)
Q Consensus 178 ~IyYD~~g~EalicSdseee~~e--ee~k---~~f~e~eD~~~~~~~~e~g~s 225 (846)
+||||+.|+|....+-.|...+. .+.. .-.+......+++.++.+|+.
T Consensus 22 ~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 22 RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 89999999998888888877666 2211 234455667778888888776
No 42
>PF08396 Toxin_34: Spider toxin omega agatoxin/Tx1 family; InterPro: IPR013605 The Tx1 family lethal spider neurotoxin induces excitatory symptoms in mice [].
Probab=28.15 E-value=42 Score=30.63 Aligned_cols=44 Identities=36% Similarity=1.008 Sum_probs=28.7
Q ss_pred CCCcccCCCcccccCCCCCccccccCC---CcccCCC-------CccC-CCCccccccCccCCCCCc
Q 003112 687 KQCPCLLNGTCCEKYCGCPKSCKNRFR---GCHCAKS-------QCRS-RQCPCFAADRECDPDVCR 742 (846)
Q Consensus 687 ~~C~C~~~g~~CEk~C~C~~~C~nRF~---GC~C~~~-------qC~t-~~CpC~~a~rECDPdlC~ 742 (846)
.+|.|..... ||.|+ ..|. ||.|..+ .|.. .+||+..+ +|++|.
T Consensus 13 ~dCqCc~~n~----~CsC~----~~fg~k~~C~C~vG~~~~~~~~C~kK~~C~Nr~~----~~~~C~ 67 (75)
T PF08396_consen 13 SDCQCCRDNG----YCSCP----FIFGYKWGCKCKVGTSWTFYGICIKKRSCPNRYQ----PPKKCK 67 (75)
T ss_pred ccccccCCCc----EecCc----hhcccccCceEEecCchhhhhHHhhhccCCCCCC----Cccccc
Confidence 4788877644 44554 3343 7999763 4765 46887666 788875
No 43
>PF14774 FAM177: FAM177 family
Probab=26.85 E-value=64 Score=31.89 Aligned_cols=66 Identities=30% Similarity=0.393 Sum_probs=34.5
Q ss_pred cccccceecCCCCeeee-cCCchhhchhhhhhccc----ccchh--h-------hhHhhhhhcCCcHHHHHHHHhhcCCC
Q 003112 174 MSRRRIYYDQNGGEALI-CSDSEEEVIEEEEKKDF----VDSED--Y-------ILRMTIKEVGLSDATLESLAQCFSRS 239 (846)
Q Consensus 174 ~grR~IyYD~~g~Eali-cSdseee~~eee~k~~f----~e~eD--~-------~~~~~~~e~g~sd~vl~~l~~~~~~~ 239 (846)
.-||-||+ .-||.|- .|.+|||...+..+.+. .+..+ . ++|+...-+.--|=|=+.||.|||.+
T Consensus 18 ~prRiihF--sdGetmEE~StdeEe~e~d~~~~d~~~~~~dp~~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~fGit 95 (123)
T PF14774_consen 18 KPRRIIHF--SDGETMEEYSTDEEEEEQDEDQPDKLSVQVDPSKLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFFGIT 95 (123)
T ss_pred CchheeEe--cCCceeeeeccccccccccccccccccccCCcccCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHhCCC
Confidence 34788888 7777664 55555541113223221 22222 1 22233333334455556899999988
Q ss_pred hh
Q 003112 240 PS 241 (846)
Q Consensus 240 ~s 241 (846)
.+
T Consensus 96 ~~ 97 (123)
T PF14774_consen 96 SP 97 (123)
T ss_pred ch
Confidence 75
No 44
>PLN03091 hypothetical protein; Provisional
Probab=25.13 E-value=52 Score=38.76 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=37.7
Q ss_pred hcccccchhhhhHhhhhhcCCcHHHHHHHHhhc--CCChhHHHHHHHHhh
Q 003112 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCF--SRSPSEVKARYEILS 251 (846)
Q Consensus 204 k~~f~e~eD~~~~~~~~e~g~sd~vl~~l~~~~--~~~~sei~eRy~~L~ 251 (846)
|.-|+..||.+|..++++||.. --..||+.+ +++.-+..+||.+.-
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~--nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHG--CWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcC--CHHHHhhhhccCcCcchHhHHHHhcc
Confidence 4579999999999999999975 345677665 599999999997644
No 45
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.27 E-value=68 Score=38.07 Aligned_cols=44 Identities=27% Similarity=0.552 Sum_probs=36.0
Q ss_pred CCCCcchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHH-HHHHHH
Q 003112 553 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWE-VFQYMT 598 (846)
Q Consensus 553 ~~~~Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~E-V~~~m~ 598 (846)
....|+.-|.-|++.|+++||+.-=-||+.+ |+||=-| ++.|++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHHHHHHHHc
Confidence 4578999999999999999999999999977 8888433 234443
No 46
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=23.06 E-value=95 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=29.0
Q ss_pred hhhhhHhhhhhcCCcHHHHHHHHhhcCCChhHHHHHHHHhh
Q 003112 211 EDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILS 251 (846)
Q Consensus 211 eD~~~~~~~~e~g~sd~vl~~l~~~~~~~~sei~eRy~~L~ 251 (846)
-|+-|-..+|+- ...=+..|++-+|.+++.+.+|.+.|.
T Consensus 4 ~D~~Il~~Lq~d--~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 4 LDRKILRLLQED--GRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHH---TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 466666677775 345678999999999999999999874
No 47
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=23.01 E-value=1.1e+02 Score=38.17 Aligned_cols=43 Identities=19% Similarity=0.485 Sum_probs=34.8
Q ss_pred CCCCcchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHHHHHHH
Q 003112 553 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYM 597 (846)
Q Consensus 553 ~~~~Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~EV~~~m 597 (846)
+..-||+.|+-||.+.+-.|-+++=+|+..| -+||=.|--+|.
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVeyY 660 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEYY 660 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHHH
Confidence 3456999999999999999999999999977 567755544443
No 48
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.37 E-value=94 Score=34.03 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=37.1
Q ss_pred cccchhhhhHhhhhhcCCcHHHHHHHHhh-------------------------------cC----CChhHHHHHHHHhh
Q 003112 207 FVDSEDYILRMTIKEVGLSDATLESLAQC-------------------------------FS----RSPSEVKARYEILS 251 (846)
Q Consensus 207 f~e~eD~~~~~~~~e~g~sd~vl~~l~~~-------------------------------~~----~~~sei~eRy~~L~ 251 (846)
|.+.|+.+|+.+.+-.|++..-|+.+..+ |+ .+.+||+..|+.|.
T Consensus 146 l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~ 225 (267)
T PRK09430 146 LHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLM 225 (267)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 66677888888888888887776644333 12 46689999999998
Q ss_pred hccccCC
Q 003112 252 KEESAVG 258 (846)
Q Consensus 252 ~~~~~~~ 258 (846)
.+-++..
T Consensus 226 ~~~HPDk 232 (267)
T PRK09430 226 SEHHPDK 232 (267)
T ss_pred HHhCcCC
Confidence 6655443
No 49
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=21.41 E-value=1.1e+02 Score=36.34 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=45.0
Q ss_pred hhhhhhccccCCCCCcchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHHHHHHHHhh
Q 003112 542 VAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS 600 (846)
Q Consensus 542 v~~~~~~~e~~~~~~Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~EV~~~m~~~ 600 (846)
+.+++|+ -+ .-|+..+..+....+.-||+.+=.|+-.+ |-++|+||-.|+..+
T Consensus 361 ipes~c~---~n-~~~~T~~~la~v~~I~~~~~~~~pl~wri--k~t~cmee~e~l~~~ 413 (534)
T KOG1194|consen 361 IPESTCR---MN-RCFDTPAALALIDNIKRKHHMCVPLVWRV--KQTKCMEENEILNEE 413 (534)
T ss_pred CCchhhh---hc-cccCcHHHHHHHHHHHHhccCcchhhhHh--cCcchhhHHHHHHHH
Confidence 5677777 23 77999999999999999999999999867 889999998887753
Done!