Query 003113
Match_columns 846
No_of_seqs 383 out of 1786
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4323 Polycomb-like PHD Zn-f 99.1 1E-10 2.2E-15 132.1 5.2 207 544-776 81-301 (464)
2 KOG0956 PHD finger protein AF1 99.0 1.5E-10 3.3E-15 133.1 4.0 142 567-714 19-187 (900)
3 KOG1244 Predicted transcriptio 99.0 8.1E-11 1.8E-15 123.8 0.0 105 542-705 220-329 (336)
4 KOG1512 PHD Zn-finger protein 98.7 3.5E-09 7.5E-14 112.3 1.1 81 567-705 276-361 (381)
5 COG5141 PHD zinc finger-contai 98.6 2.7E-08 5.8E-13 111.7 2.7 125 545-690 192-341 (669)
6 KOG4299 PHD Zn-finger protein 98.5 4.2E-08 9.2E-13 113.5 3.6 60 536-604 241-306 (613)
7 PF15446 zf-PHD-like: PHD/FYVE 98.5 7.9E-08 1.7E-12 96.0 4.8 130 548-686 1-143 (175)
8 KOG0954 PHD finger protein [Ge 98.5 4.6E-08 1E-12 114.1 3.0 147 543-708 268-440 (893)
9 KOG0825 PHD Zn-finger protein 98.5 3.9E-08 8.5E-13 114.9 1.5 54 644-708 213-267 (1134)
10 KOG0955 PHD finger protein BR1 98.4 9.8E-08 2.1E-12 117.1 3.9 127 544-687 217-365 (1051)
11 KOG0383 Predicted helicase [Ge 98.4 1.1E-07 2.3E-12 113.0 2.7 156 575-772 1-163 (696)
12 KOG4299 PHD Zn-finger protein 98.3 4.8E-07 1E-11 105.0 4.1 51 648-707 255-305 (613)
13 KOG4443 Putative transcription 98.1 1.1E-06 2.4E-11 102.2 2.4 92 566-713 31-127 (694)
14 COG5034 TNG2 Chromatin remodel 98.0 3.6E-06 7.7E-11 89.0 4.2 52 540-602 215-269 (271)
15 PF00628 PHD: PHD-finger; Int 97.9 1.4E-06 3E-11 70.5 -1.1 49 648-705 1-49 (51)
16 smart00249 PHD PHD zinc finger 97.9 1.1E-05 2.5E-10 62.4 3.5 47 648-704 1-47 (47)
17 PF00628 PHD: PHD-finger; Int 97.8 7.5E-06 1.6E-10 66.3 1.8 46 548-602 1-50 (51)
18 KOG1973 Chromatin remodeling p 97.8 9.2E-06 2E-10 87.9 2.5 49 544-603 217-268 (274)
19 KOG1512 PHD Zn-finger protein 97.8 1.1E-05 2.4E-10 86.3 2.0 53 541-602 309-362 (381)
20 KOG1244 Predicted transcriptio 97.7 1.1E-05 2.4E-10 85.9 1.7 51 545-604 280-332 (336)
21 KOG0383 Predicted helicase [Ge 97.7 1.6E-05 3.6E-10 94.8 2.9 49 543-603 44-94 (696)
22 smart00249 PHD PHD zinc finger 97.6 4.1E-05 9E-10 59.3 3.3 44 548-600 1-47 (47)
23 KOG1473 Nucleosome remodeling 97.3 3.6E-05 7.9E-10 93.8 -1.0 126 544-706 342-478 (1414)
24 COG5034 TNG2 Chromatin remodel 97.3 0.0001 2.2E-09 78.3 1.7 48 644-706 219-269 (271)
25 KOG1973 Chromatin remodeling p 97.2 0.00013 2.9E-09 79.0 1.1 36 664-706 229-267 (274)
26 KOG0825 PHD Zn-finger protein 97.1 0.00016 3.4E-09 85.7 1.3 48 546-602 215-265 (1134)
27 KOG0957 PHD finger protein [Ge 97.1 0.00034 7.4E-09 79.7 3.4 125 548-686 121-276 (707)
28 KOG4443 Putative transcription 97.0 0.00027 5.9E-09 82.9 1.8 140 537-705 59-200 (694)
29 PF13831 PHD_2: PHD-finger; PD 96.9 0.00024 5.2E-09 54.8 -0.2 34 568-601 2-36 (36)
30 KOG0957 PHD finger protein [Ge 96.7 0.00072 1.6E-08 77.2 1.5 57 647-714 545-607 (707)
31 cd04718 BAH_plant_2 BAH, or Br 96.3 0.0017 3.8E-08 64.6 1.9 26 579-604 1-28 (148)
32 KOG0955 PHD finger protein BR1 95.9 0.0046 9.9E-08 77.3 3.2 56 644-710 217-272 (1051)
33 cd04718 BAH_plant_2 BAH, or Br 95.9 0.0039 8.5E-08 62.1 1.9 27 676-707 1-27 (148)
34 KOG0956 PHD finger protein AF1 95.1 0.0098 2.1E-07 70.5 1.9 51 645-706 4-56 (900)
35 KOG1245 Chromatin remodeling c 95.1 0.0047 1E-07 79.6 -0.8 57 643-710 1105-1161(1404)
36 KOG1245 Chromatin remodeling c 95.1 0.0054 1.2E-07 79.1 -0.4 51 544-603 1106-1158(1404)
37 KOG4323 Polycomb-like PHD Zn-f 95.1 0.011 2.3E-07 68.3 2.0 53 545-604 167-225 (464)
38 COG5141 PHD zinc finger-contai 93.5 0.029 6.2E-07 64.6 1.1 47 647-704 194-240 (669)
39 smart00258 SAND SAND domain. 92.4 0.11 2.5E-06 46.3 3.0 50 260-311 19-69 (73)
40 KOG0954 PHD finger protein [Ge 92.0 0.069 1.5E-06 64.1 1.5 51 645-706 270-320 (893)
41 PF01342 SAND: SAND domain; I 90.9 0.096 2.1E-06 47.5 0.9 55 255-311 18-78 (82)
42 PF13831 PHD_2: PHD-finger; PD 89.4 0.045 9.8E-07 42.3 -2.0 33 665-704 2-35 (36)
43 PF12861 zf-Apc11: Anaphase-pr 87.5 0.26 5.7E-06 45.2 1.2 59 545-605 20-82 (85)
44 PF07227 DUF1423: Protein of u 84.5 0.98 2.1E-05 52.3 4.1 56 649-708 131-193 (446)
45 PF13508 Acetyltransf_7: Acety 84.4 2.7 5.8E-05 36.2 5.9 38 806-844 4-41 (79)
46 PF07897 DUF1675: Protein of u 84.3 1.4 3.1E-05 48.5 5.1 67 227-297 210-283 (284)
47 PF12678 zf-rbx1: RING-H2 zinc 84.2 0.25 5.4E-06 43.6 -0.6 54 546-601 19-73 (73)
48 PF11793 FANCL_C: FANCL C-term 81.8 1.1 2.3E-05 39.4 2.4 54 546-605 2-66 (70)
49 KOG2752 Uncharacterized conser 80.3 1.4 3.1E-05 48.9 3.2 103 566-685 64-167 (345)
50 PF13639 zf-RING_2: Ring finge 79.6 0.14 3E-06 40.4 -3.5 43 548-601 2-44 (44)
51 PF14446 Prok-RING_1: Prokaryo 78.4 1.4 3E-05 37.4 1.9 34 545-586 4-37 (54)
52 PF00583 Acetyltransf_1: Acety 73.5 6 0.00013 33.5 4.6 34 811-844 2-40 (83)
53 PF13771 zf-HC5HC2H: PHD-like 69.9 1.8 4E-05 38.8 0.6 32 647-686 37-70 (90)
54 PF14446 Prok-RING_1: Prokaryo 69.2 3.3 7.2E-05 35.2 1.9 35 647-686 6-40 (54)
55 KOG1473 Nucleosome remodeling 68.4 2.6 5.5E-05 53.5 1.6 44 648-705 346-389 (1414)
56 PF13832 zf-HC5HC2H_2: PHD-zin 65.9 2.6 5.6E-05 39.4 0.8 32 647-686 56-89 (110)
57 KOG4628 Predicted E3 ubiquitin 57.9 6.5 0.00014 44.7 2.2 49 547-605 230-278 (348)
58 PF15446 zf-PHD-like: PHD/FYVE 57.5 5.7 0.00012 40.9 1.6 35 649-686 2-36 (175)
59 KOG1701 Focal adhesion adaptor 55.4 2.6 5.6E-05 48.7 -1.4 36 648-685 396-431 (468)
60 cd04301 NAT_SF N-Acyltransfera 53.7 24 0.00051 26.8 4.2 37 808-844 2-40 (65)
61 PF10497 zf-4CXXC_R1: Zinc-fin 52.0 6.7 0.00015 37.3 1.0 50 543-602 4-69 (105)
62 PF13901 DUF4206: Domain of un 48.9 15 0.00032 38.7 3.0 36 648-684 154-189 (202)
63 KOG1701 Focal adhesion adaptor 47.9 3 6.6E-05 48.1 -2.3 37 548-604 276-312 (468)
64 COG3393 Predicted acetyltransf 47.7 19 0.00041 39.6 3.7 40 805-844 177-216 (268)
65 PF13527 Acetyltransf_9: Acety 47.4 48 0.001 30.5 5.9 71 764-844 10-87 (127)
66 COG0143 MetG Methionyl-tRNA sy 47.2 22 0.00048 43.0 4.5 30 647-684 143-172 (558)
67 PHA02929 N1R/p28-like protein; 46.3 8 0.00017 41.9 0.6 55 544-604 172-226 (238)
68 PF12746 GNAT_acetyltran: GNAT 46.2 30 0.00065 38.1 4.9 39 803-844 164-203 (265)
69 cd00162 RING RING-finger (Real 44.6 6.6 0.00014 29.4 -0.2 30 571-602 13-43 (45)
70 PF11793 FANCL_C: FANCL C-term 43.8 12 0.00025 33.0 1.1 35 648-685 4-40 (70)
71 PF13673 Acetyltransf_10: Acet 43.8 49 0.0011 29.7 5.3 36 805-844 44-79 (117)
72 KOG1734 Predicted RING-contain 42.1 6.4 0.00014 43.2 -0.9 55 545-604 223-280 (328)
73 PF13832 zf-HC5HC2H_2: PHD-zin 41.8 14 0.0003 34.5 1.3 31 545-586 54-86 (110)
74 PF13901 DUF4206: Domain of un 40.4 26 0.00056 36.8 3.3 46 544-602 150-197 (202)
75 COG5194 APC11 Component of SCF 38.7 7.5 0.00016 35.6 -0.8 57 547-605 21-81 (88)
76 PF10497 zf-4CXXC_R1: Zinc-fin 38.2 11 0.00023 36.0 0.0 53 647-707 8-70 (105)
77 PF07943 PBP5_C: Penicillin-bi 37.2 40 0.00087 30.0 3.6 26 814-839 63-88 (91)
78 KOG1493 Anaphase-promoting com 36.8 5.1 0.00011 36.3 -2.2 59 546-605 20-81 (84)
79 PRK10975 TDP-fucosamine acetyl 36.2 57 0.0012 33.0 4.9 43 802-844 99-141 (194)
80 KOG0804 Cytoplasmic Zn-finger 35.7 14 0.00029 43.3 0.3 46 545-602 174-219 (493)
81 PF02591 DUF164: Putative zinc 35.3 13 0.00029 31.0 0.2 34 545-578 21-54 (56)
82 KOG1829 Uncharacterized conser 33.8 11 0.00025 45.4 -0.7 37 662-710 526-562 (580)
83 PRK07757 acetyltransferase; Pr 33.7 67 0.0014 30.7 4.7 36 809-844 45-80 (152)
84 KOG1632 Uncharacterized PHD Zn 33.3 24 0.00052 40.2 1.8 44 666-713 74-119 (345)
85 TIGR03827 GNAT_ablB putative b 33.2 79 0.0017 34.0 5.7 41 804-844 157-198 (266)
86 KOG1246 DNA-binding protein ju 33.0 30 0.00065 44.0 2.8 49 545-603 154-204 (904)
87 KOG3612 PHD Zn-finger protein 32.8 28 0.0006 41.7 2.2 45 557-602 60-107 (588)
88 TIGR02174 CXXU_selWTH selT/sel 31.9 30 0.00066 30.5 1.8 29 40-69 39-67 (72)
89 PRK03624 putative acetyltransf 30.5 71 0.0015 29.2 4.2 38 806-844 46-83 (140)
90 TIGR03448 mycothiol_MshD mycot 30.2 1.1E+02 0.0024 32.7 6.1 39 806-844 47-85 (292)
91 PLN02400 cellulose synthase 30.0 66 0.0014 41.7 5.0 58 543-606 33-90 (1085)
92 KOG1081 Transcription factor N 29.7 33 0.00072 40.6 2.2 46 544-602 87-132 (463)
93 TIGR01575 rimI ribosomal-prote 29.6 1.2E+02 0.0026 27.4 5.5 36 808-844 34-69 (131)
94 KOG1246 DNA-binding protein ju 29.2 40 0.00086 43.0 3.0 48 648-707 157-204 (904)
95 PF07649 C1_3: C1-like domain; 28.3 20 0.00043 26.4 0.1 27 649-681 3-29 (30)
96 PF14569 zf-UDP: Zinc-binding 28.3 13 0.00028 33.9 -1.1 57 543-605 6-62 (80)
97 PLN02436 cellulose synthase A 27.5 66 0.0014 41.7 4.4 58 543-606 33-90 (1094)
98 PHA02926 zinc finger-like prot 27.4 31 0.00066 37.3 1.3 59 543-604 167-229 (242)
99 PF10262 Rdx: Rdx family; Int 27.1 18 0.00039 32.0 -0.4 27 41-68 42-68 (76)
100 PRK13361 molybdenum cofactor b 26.8 1.5E+02 0.0033 33.0 6.7 68 254-335 242-310 (329)
101 PF13771 zf-HC5HC2H: PHD-like 26.0 36 0.00079 30.4 1.3 32 544-586 34-67 (90)
102 PRK07922 N-acetylglutamate syn 25.9 98 0.0021 31.0 4.6 37 808-844 48-85 (169)
103 KOG0827 Predicted E3 ubiquitin 25.0 16 0.00035 42.1 -1.4 47 547-603 5-54 (465)
104 PRK10146 aminoalkylphosphonic 24.9 1.1E+02 0.0024 28.6 4.5 37 808-844 50-91 (144)
105 PRK10314 putative acyltransfer 24.8 1.2E+02 0.0025 30.1 4.8 70 763-844 16-89 (153)
106 COG1675 TFA1 Transcription ini 24.3 52 0.0011 34.3 2.2 67 293-365 72-140 (176)
107 KOG1642 Ribonuclease, T2 famil 23.7 38 0.00081 37.2 1.1 58 276-333 117-189 (263)
108 KOG4628 Predicted E3 ubiquitin 22.6 41 0.00089 38.5 1.2 45 648-706 231-275 (348)
109 COG1773 Rubredoxin [Energy pro 22.6 49 0.0011 28.4 1.4 15 587-602 30-44 (55)
110 PLN02638 cellulose synthase A 22.5 54 0.0012 42.4 2.3 57 544-606 15-71 (1079)
111 KOG1428 Inhibitor of type V ad 21.8 21 0.00045 47.0 -1.3 31 575-605 3506-3544(3738)
112 TIGR02382 wecD_rffC TDP-D-fuco 21.7 1.6E+02 0.0034 29.8 5.2 37 808-844 102-138 (191)
113 PF00130 C1_1: Phorbol esters/ 20.8 82 0.0018 25.5 2.3 36 544-586 9-44 (53)
114 COG1246 ArgA N-acetylglutamate 20.7 1.1E+02 0.0023 31.4 3.6 36 809-844 44-80 (153)
115 PRK09491 rimI ribosomal-protei 20.3 1.9E+02 0.0041 27.4 5.1 40 804-844 39-78 (146)
116 KOG3612 PHD Zn-finger protein 20.3 61 0.0013 39.0 2.0 50 646-708 60-109 (588)
117 PF10367 Vps39_2: Vacuolar sor 20.1 67 0.0015 29.2 1.9 33 544-586 76-108 (109)
118 PF07496 zf-CW: CW-type Zinc F 20.0 34 0.00074 28.2 -0.1 32 666-702 2-34 (50)
No 1
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=99.07 E-value=1e-10 Score=132.13 Aligned_cols=207 Identities=19% Similarity=0.260 Sum_probs=139.3
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~ 623 (846)
.....|.+|..+... .+.++..|+.|.++||+.|.-......+.|.+..|...+--....+. ..|+..
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~-----K~g~~a 148 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGAL-----KKGRLA 148 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccc-----cccccc
Confidence 455678888864433 46789999999999999998543344467999988765321111111 112211
Q ss_pred ------CcCchhhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCC
Q 003113 624 ------GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGK 697 (846)
Q Consensus 624 ------Gvd~ieqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~ 697 (846)
+...+++...+. .+ ..|.+|....+ + ..+.||+|+.|..|||..|.++..-..+-..|.++
T Consensus 149 ~~~l~y~~~~l~wD~~~~--------~n-~qc~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~ 215 (464)
T KOG4323|consen 149 RPSLPYPEASLDWDSGHK--------VN-LQCSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYE 215 (464)
T ss_pred cccccCcccccccCcccc--------cc-ceeeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccce
Confidence 222222111111 11 12888875432 2 23489999999999999999997666666778999
Q ss_pred cEEcCCccchhHHHHhhhhccccccchhhHH--Hhh--hhhcCcccccccccceeEEcc-CCCCC---hHHHHHHHHHHH
Q 003113 698 WFCCMDCSRINSVLQNLLVQEAEKLPEFHLN--AIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVA 769 (846)
Q Consensus 698 WfC~~~C~~I~s~LqkLva~g~e~lp~sll~--~Ik--k~~e~gle~~~~~dikW~LLs-gk~as---~E~~skLa~AL~ 769 (846)
||| ..|.+-...+.++-++|++.++..+.+ .+. +|+..-+++....+-.|..|. |...+ .+..+.+..|++
T Consensus 216 w~C-~~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~ 294 (464)
T KOG4323|consen 216 WFC-DVCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALS 294 (464)
T ss_pred Eee-hhhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhh
Confidence 999 899999999999999999998877744 333 667666666666777888775 44443 456778888888
Q ss_pred HhhhhcC
Q 003113 770 IFHDCFD 776 (846)
Q Consensus 770 Im~EcF~ 776 (846)
-....|.
T Consensus 295 ~~~~~f~ 301 (464)
T KOG4323|consen 295 SYKSRFV 301 (464)
T ss_pred ccccccc
Confidence 8776664
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.01 E-value=1.5e-10 Score=133.14 Aligned_cols=142 Identities=23% Similarity=0.517 Sum_probs=92.3
Q ss_pred CCceeccCC--CCcccccccCCCCCCCCCCccccccccc---------c--cccccccccccc----------ccccccc
Q 003113 567 GGNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM---------F--ERKRFLQHDANA----------VEAGRVS 623 (846)
Q Consensus 567 gG~Ll~CD~--Cp~afH~~CL~L~~vP~g~W~Cp~C~~~---------~--~~ek~va~n~na----------~a~Gr~~ 623 (846)
..-|+.||+ |.-+.|+.|+++.+||.|.|||+.|... . ++.+++.+..|. +..-+|.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 458999996 9999999999999999999999999532 2 234455444332 1233455
Q ss_pred CcCchhhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCCCCCccccCCC--CCCcE
Q 003113 624 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELP--KGKWF 699 (846)
Q Consensus 624 Gvd~ieqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv~CL~p~~~~~LkevP--~g~Wf 699 (846)
.|-..|.|.-..+. -+.-...||||.+.+-. .....+..|.|. .|.++||+.|.+..++-.-++.- .--=|
T Consensus 99 NV~TMEPIiLq~VP----~dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVP----HDRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCc----hhhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 55555554321110 01223569999865311 122356789998 79999999999877643222211 11237
Q ss_pred EcCCccchhHHHHhh
Q 003113 700 CCMDCSRINSVLQNL 714 (846)
Q Consensus 700 C~~~C~~I~s~LqkL 714 (846)
| ..|+..+.+|.+-
T Consensus 174 C-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKS 187 (900)
T ss_pred c-hhHHHHHHHhhcC
Confidence 8 8999999988864
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.98 E-value=8.1e-11 Score=123.81 Aligned_cols=105 Identities=26% Similarity=0.689 Sum_probs=80.2
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCC-----CCCCCCcccccccccccccccccccccc
Q 003113 542 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANA 616 (846)
Q Consensus 542 ~~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~-----~vP~g~W~Cp~C~~~~~~ek~va~n~na 616 (846)
+.-..-+|..|...--. =....-..+|+.|..|.++-|.+||.++ .+-...|+|..|+
T Consensus 220 ~a~Pn~YCDFclgdsr~--nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck--------------- 282 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRE--NKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK--------------- 282 (336)
T ss_pred cccCCcccceecccccc--ccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc---------------
Confidence 33456678888741100 0001135699999999999999999743 4556789999997
Q ss_pred cccccccCcCchhhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCC
Q 003113 617 VEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG 696 (846)
Q Consensus 617 ~a~Gr~~Gvd~ieqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g 696 (846)
+|.+|+-++ ++..+|+||-|++.||++||.| +|-+.|+|
T Consensus 283 -------------------------------~csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppeg 321 (336)
T KOG1244|consen 283 -------------------------------YCSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEG 321 (336)
T ss_pred -------------------------------eeccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCC
Confidence 499999664 6789999999999999999998 68889999
Q ss_pred CcEEcCCcc
Q 003113 697 KWFCCMDCS 705 (846)
Q Consensus 697 ~WfC~~~C~ 705 (846)
.|-| .-|-
T Consensus 322 swsc-~KOG 329 (336)
T KOG1244|consen 322 SWSC-HLCL 329 (336)
T ss_pred chhH-HHHH
Confidence 9999 5564
No 4
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.71 E-value=3.5e-09 Score=112.27 Aligned_cols=81 Identities=31% Similarity=0.778 Sum_probs=67.3
Q ss_pred CCceeccCCCCcccccccCCCC-----CCCCCCcccccccccccccccccccccccccccccCcCchhhhhhhhhhhhcc
Q 003113 567 GGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKN 641 (846)
Q Consensus 567 gG~Ll~CD~Cp~afH~~CL~L~-----~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~Gvd~ieqi~~rc~R~~kd 641 (846)
...|++|..|..++|..|+.+. .+-...|.|-.|+
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~---------------------------------------- 315 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE---------------------------------------- 315 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH----------------------------------------
Confidence 4689999999999999999743 3445679999997
Q ss_pred ccccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCcc
Q 003113 642 LEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (846)
Q Consensus 642 ~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~ 705 (846)
.|.+|++.. -+..+++||.|++.||..|+ .|..+|.|.|.|-..|.
T Consensus 316 ------lC~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 316 ------LCRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRCR 361 (381)
T ss_pred ------hhhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHHH
Confidence 388998764 45689999999999999999 47789999999955573
No 5
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.56 E-value=2.7e-08 Score=111.69 Aligned_cols=125 Identities=27% Similarity=0.652 Sum_probs=78.1
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccccc--------ccc--cccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM--------FER--KRFLQHDA 614 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~--------~~~--ek~va~n~ 614 (846)
-...|..|...-+. ..+.+++||+|..+.|+.|+|+.-+|+|.|+|+.|... |+. .+++....
T Consensus 192 ~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~ 264 (669)
T COG5141 192 FDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTS 264 (669)
T ss_pred hhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeecc
Confidence 45678888853322 45789999999999999999999999999999999642 111 12222111
Q ss_pred c--------cccc-----ccccCcCchhhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCC--CCCCcCCC
Q 003113 615 N--------AVEA-----GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHV 679 (846)
Q Consensus 615 n--------a~a~-----Gr~~Gvd~ieqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv 679 (846)
. +++. |.....|+++.+.. + .......+|.+|+.. .++.++|. .|-++||+
T Consensus 265 dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~s-----V-s~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHV 330 (669)
T COG5141 265 DGRWGHVICAMFNPELSFGHLLSKDPIDNIAS-----V-SSSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHV 330 (669)
T ss_pred CCchHhHhHHHhcchhccccccccchhhhhcc-----c-chhhHhheeeEEccc--------Ccceeeecccchhhhhhh
Confidence 1 1110 00011111111110 0 001233569999964 47899998 59999999
Q ss_pred CCCCCCCCccc
Q 003113 680 GCLKKHKMADL 690 (846)
Q Consensus 680 ~CL~p~~~~~L 690 (846)
+|....+.-++
T Consensus 331 tCArrag~f~~ 341 (669)
T COG5141 331 TCARRAGYFDL 341 (669)
T ss_pred hhhhhcchhhh
Confidence 99987765444
No 6
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.54 E-value=4.2e-08 Score=113.45 Aligned_cols=60 Identities=30% Similarity=0.731 Sum_probs=45.1
Q ss_pred eeccccccCCC--cccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC----CCCCCCCCcccccccccc
Q 003113 536 KLLEGYKNGLG--IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 536 ~ll~G~~~~~g--i~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~----L~~vP~g~W~Cp~C~~~~ 604 (846)
...++.+.-.. ++|+.|++.- ...+++|||+||.+||+.||+ .+.+|.|.|+|+.|...+
T Consensus 241 ~~~D~~~~~~~~~~fCsaCn~~~---------~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 241 RERDKNISVEDIEDFCSACNGSG---------LFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred hhhccccccCCHHHHHHHhCCcc---------ccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 34455554444 4999999521 114569999999999999996 467899999999998763
No 7
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.53 E-value=7.9e-08 Score=96.00 Aligned_cols=130 Identities=20% Similarity=0.397 Sum_probs=68.8
Q ss_pred ccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCC--------CCCCCCC--ccccccccccccccccccccccc
Q 003113 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAV 617 (846)
Q Consensus 548 ~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L--------~~vP~g~--W~Cp~C~~~~~~ek~va~n~na~ 617 (846)
.|..|...-..+ ..|.|+.|.||..+||+.|||. +.|.++. .+|..|.....++...+......
T Consensus 1 ~C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCCc------cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcc
Confidence 377776422222 5789999999999999999983 4455544 89999987766666555442211
Q ss_pred ccccccCcCch---hhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCC
Q 003113 618 EAGRVSGVDSV---EQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (846)
Q Consensus 618 a~Gr~~Gvd~i---eqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~ 686 (846)
..-...|.... +..+.+ ..+....+.++=--.-..+....+..++.|+.|..|.++||...|++..
T Consensus 75 ~~C~~~G~~c~pfr~r~T~k---QEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPK---QEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcH---HHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 11111111000 000000 0000000000000000001111223456789999999999999999853
No 8
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.51 E-value=4.6e-08 Score=114.08 Aligned_cols=147 Identities=22% Similarity=0.492 Sum_probs=90.8
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccccc------c--ccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER------K--RFLQHDA 614 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~------e--k~va~n~ 614 (846)
..+..+|.+|....+. ++.+|++||.|....|+.|+|+.++|+|.|.|..|...+++ + +++..+.
T Consensus 268 ~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~ 340 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTK 340 (893)
T ss_pred ccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccC
Confidence 3477889999964443 57899999999999999999999999999999999765432 1 1221111
Q ss_pred cccccccccCcC---chhhhhhhhhhhhccc--------cccCCCcccccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 003113 615 NAVEAGRVSGVD---SVEQITKRCIRIVKNL--------EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (846)
Q Consensus 615 na~a~Gr~~Gvd---~ieqi~~rc~R~~kd~--------e~e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv~C 681 (846)
... .+..+. |+.++...|...++.+ ......|.+|+.. .+..|+|. .|...||+.|
T Consensus 341 sgT---~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~C 409 (893)
T KOG0954|consen 341 SGT---KWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTC 409 (893)
T ss_pred CCC---eeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchh
Confidence 100 011111 2223222222221111 1122359999853 36789998 7999999999
Q ss_pred CCCCCCccc---cCC--CCCCcEEcCCccchh
Q 003113 682 LKKHKMADL---REL--PKGKWFCCMDCSRIN 708 (846)
Q Consensus 682 L~p~~~~~L---kev--P~g~WfC~~~C~~I~ 708 (846)
...+|+..- .+. -+..-|| ..|..+.
T Consensus 410 A~~aG~~~~~~~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 410 AFEAGLEMKTILKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred hhhcCCeeeeeeccCCchhheeec-ccccccc
Confidence 998875311 111 1244588 5565554
No 9
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.48 E-value=3.9e-08 Score=114.86 Aligned_cols=54 Identities=39% Similarity=0.920 Sum_probs=46.3
Q ss_pred ccCCCcccccCCCCCCCCCCCCceeeCCCCCCc-CCCCCCCCCCCccccCCCCCCcEEcCCccchh
Q 003113 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 708 (846)
Q Consensus 644 ~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~-YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I~ 708 (846)
.+...|.+|..+| .+..||+||.|... ||++||++ +|.++|-+.||| .+|.-+.
T Consensus 213 ~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 213 QEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred cccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 3446799999876 45678999999999 99999998 799999999999 9997654
No 10
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.45 E-value=9.8e-08 Score=117.11 Aligned_cols=127 Identities=23% Similarity=0.567 Sum_probs=81.3
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 623 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~ 623 (846)
..+.+|.+|..-..- .-..+++||+|..++|+.|+|+.-+|+|.|+|..|.+.-++. +....+..+.|.+.
T Consensus 217 ~~D~~C~iC~~~~~~-------n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAFk 287 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQ-------NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAFK 287 (1051)
T ss_pred CCCccceeecccccC-------CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcce
Confidence 577899999853221 346899999999999999999999999999999998653321 11112222233333
Q ss_pred CcCc-----------hhhhh---------hhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCC--CCCCcCCCCC
Q 003113 624 GVDS-----------VEQIT---------KRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 681 (846)
Q Consensus 624 Gvd~-----------ieqi~---------~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv~C 681 (846)
..+. ++++. ...++... .....-.|++|+.. +.+..++|. .|-.+||++|
T Consensus 288 qt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~-~aRwkL~cy~cK~~-------~~gaciqcs~~~c~~a~hvtc 359 (1051)
T KOG0955|consen 288 QTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIP-PARWKLTCYICKQK-------GLGACIQCSKANCYTAFHVTC 359 (1051)
T ss_pred eccCCceeeeehhhcccccccccchhhccccchhcCc-HhhhhceeeeeccC-------CCCcceecchhhhhhhhhhhh
Confidence 3221 11110 00111111 01223469999964 357889998 6999999999
Q ss_pred CCCCCC
Q 003113 682 LKKHKM 687 (846)
Q Consensus 682 L~p~~~ 687 (846)
....++
T Consensus 360 a~~agl 365 (1051)
T KOG0955|consen 360 ARRAGL 365 (1051)
T ss_pred HhhcCc
Confidence 887764
No 11
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.41 E-value=1.1e-07 Score=113.04 Aligned_cols=156 Identities=26% Similarity=0.465 Sum_probs=101.3
Q ss_pred CCCcccccccCC--CCCCCCCCcccccccccccccccccccccccccccccCcCchhhhhhhhhhhhccccccCCCcccc
Q 003113 575 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 652 (846)
Q Consensus 575 ~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~Gvd~ieqi~~rc~R~~kd~e~e~~~C~iC 652 (846)
.|++.||..|++ +.+-|+++|.||.|....-. ..+ ...+ -...+..+|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~---------~~~----~~~~--------------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ---------VEA----KDDD--------------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc---------ccc----ccCC--------------cchhhhhhhhhh
Confidence 489999999997 66677999999999742100 000 0000 012345689999
Q ss_pred cCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccc--hhHHHHhhhhccccccchh---hH
Q 003113 653 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR--INSVLQNLLVQEAEKLPEF---HL 727 (846)
Q Consensus 653 g~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~--I~s~LqkLva~g~e~lp~s---ll 727 (846)
+. .+++|.||.|..+||..|+.+ ++...|.++|.|+ .|.- .....++++.+.--+.+.. .-
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 84 468999999999999999987 6778888889994 7732 2234455665432222221 11
Q ss_pred HHhhhhhcCcccccccccceeEEccCCCCChHHHHHHHHHHHHhh
Q 003113 728 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFH 772 (846)
Q Consensus 728 ~~Ikk~~e~gle~~~~~dikW~LLsgk~as~E~~skLa~AL~Im~ 772 (846)
+.+.-+... .-..+++.++|+.+++.++.|....++...+..+-
T Consensus 120 ~~~~~~~~~-~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~ 163 (696)
T KOG0383|consen 120 GVISPRRSN-GIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP 163 (696)
T ss_pred CccCCcccc-cchhhhcccccccCCccchhHHHHHHhhhhcccch
Confidence 111111111 12356789999999999999988887765555553
No 12
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.28 E-value=4.8e-07 Score=104.97 Aligned_cols=51 Identities=37% Similarity=0.931 Sum_probs=42.0
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccch
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I 707 (846)
+|..|++.+ .| ..+|+||.|++.||++||.|+- ..+.+|.+.||| +.|..+
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECKIK 305 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCeee
Confidence 799998764 23 5789999999999999999841 367899999999 888643
No 13
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.11 E-value=1.1e-06 Score=102.25 Aligned_cols=92 Identities=30% Similarity=0.807 Sum_probs=69.2
Q ss_pred CCCceeccCCCCcccccccCCC--CCC-CCCCcccccccccccccccccccccccccccccCcCchhhhhhhhhhhhccc
Q 003113 566 DGGNLLPCDGCPRAFHKECASL--SSI-PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 642 (846)
Q Consensus 566 dgG~Ll~CD~Cp~afH~~CL~L--~~v-P~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~Gvd~ieqi~~rc~R~~kd~ 642 (846)
-.|.|+-|..|...||.+|+.+ ... -.+-|.||.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3567999999999999999962 111 134499999972
Q ss_pred cccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCC--ccchhHHHHh
Q 003113 643 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMD--CSRINSVLQN 713 (846)
Q Consensus 643 e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~--C~~I~s~Lqk 713 (846)
|..|+.. -++...++|+.|+-.||.+|..| +++.+|.+.|+|+.+ |..-...|..
T Consensus 71 ------Ce~c~~~------gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 71 ------CEACGTT------GDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred ------eeecccc------CCcccccccccccccccccccCC----ccccccCcccccHHHHhhhhccccccc
Confidence 6677733 26788999999999999999998 678899999999432 4433344444
No 14
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.04 E-value=3.6e-06 Score=88.95 Aligned_cols=52 Identities=37% Similarity=0.988 Sum_probs=44.5
Q ss_pred ccccCCCcccccCCCCCCCCcccccCCCCceeccCC--CCcc-cccccCCCCCCCCCCcccccccc
Q 003113 540 GYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQN 602 (846)
Q Consensus 540 G~~~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~--Cp~a-fH~~CL~L~~vP~g~W~Cp~C~~ 602 (846)
+...++..+|.|=+. ..|+|+-||+ |.+- ||..|+||.+.|.|.|||+.|+.
T Consensus 215 d~se~e~lYCfCqqv-----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 215 DNSEGEELYCFCQQV-----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ccccCceeEEEeccc-----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 334567788987664 5899999996 9998 99999999999999999999974
No 15
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.92 E-value=1.4e-06 Score=70.53 Aligned_cols=49 Identities=31% Similarity=0.911 Sum_probs=36.6
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCcc
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~ 705 (846)
+|.+|+..+ +.+.+|+|+.|.++||..|+.+... ....+...|+| +.|.
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 388898742 5778999999999999999998531 12334459999 6664
No 16
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.83 E-value=7.5e-06 Score=66.27 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.2
Q ss_pred ccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCC----CCCCCCcccccccc
Q 003113 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 602 (846)
Q Consensus 548 ~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~----~vP~g~W~Cp~C~~ 602 (846)
+|.+|++. .+.++||.||.|...||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888861 168899999999999999999865 33456899999974
No 18
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.81 E-value=9.2e-06 Score=87.91 Aligned_cols=49 Identities=35% Similarity=0.934 Sum_probs=42.1
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCC--CCcc-cccccCCCCCCCCCCccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQNM 603 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~--Cp~a-fH~~CL~L~~vP~g~W~Cp~C~~~ 603 (846)
.+..+|.|... .+|+|+-||+ |+.. ||..|+||..-|.|.||||.|+..
T Consensus 217 ~e~~yC~Cnqv-----------syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICNQV-----------SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEeccc-----------ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 45667887753 6899999997 9954 999999999999999999999853
No 19
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.75 E-value=1.1e-05 Score=86.30 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=43.9
Q ss_pred cccCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccc-cccc
Q 003113 541 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 602 (846)
Q Consensus 541 ~~~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp-~C~~ 602 (846)
|..-+...|.+|++... ..++++||.|+++||..|+||..+|.|.|.|- .|..
T Consensus 309 W~C~~C~lC~IC~~P~~---------E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVI---------ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhcccHhhhccCCccc---------chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 33456778889997553 56899999999999999999999999999997 4553
No 20
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.74 E-value=1.1e-05 Score=85.90 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=41.3
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCcccccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~ 604 (846)
+.-.|++|+... ...+||+||.|+++||.+||. +.+.|+|.|.|..|...+
T Consensus 280 eck~csicgtse---------nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSE---------NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcC---------CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 445677777532 457899999999999999996 778899999999997654
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.71 E-value=1.6e-05 Score=94.82 Aligned_cols=49 Identities=39% Similarity=0.924 Sum_probs=42.8
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCccccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (846)
..+...|.+|. ++|++++||.|+.+||..|++ +...|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 45677899999 799999999999999999996 67888888999999443
No 22
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.34 E-value=3.6e-05 Score=93.78 Aligned_cols=126 Identities=25% Similarity=0.425 Sum_probs=81.5
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCccccccccccccccccccccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 621 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr 621 (846)
.-+++|..|. +.|.++||..||+.||..|+. .-.+|+..|.|--|.. ++.. |.
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkvn-----------gv 396 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKVN-----------GV 396 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hccC-----------cc
Confidence 4568899999 799999999999999999995 6678999999999973 2211 11
Q ss_pred ccCcCchh-hhh-hhhhhhhcc-----ccccCCCcccccCCCCCCCCCCCCceeeCCC-CCCcCCC-CCCCCCCCccccC
Q 003113 622 VSGVDSVE-QIT-KRCIRIVKN-----LEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRE 692 (846)
Q Consensus 622 ~~Gvd~ie-qi~-~rc~R~~kd-----~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDq-Cer~YHv-~CL~p~~~~~Lke 692 (846)
+.++-+.+ ++. .|+..+-.| .-....-|.+|+. +++++-|+. |++.||. .||+..-. -..
T Consensus 397 vd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~ 465 (1414)
T KOG1473|consen 397 VDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMY 465 (1414)
T ss_pred cccccChhhcccceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHh
Confidence 11111000 000 011111111 0111233889984 467899997 9999999 99984321 125
Q ss_pred CCCCCcEEcCCccc
Q 003113 693 LPKGKWFCCMDCSR 706 (846)
Q Consensus 693 vP~g~WfC~~~C~~ 706 (846)
++.+-|+| .+|-.
T Consensus 466 L~d~i~~~-~ee~~ 478 (1414)
T KOG1473|consen 466 LCDGIWER-REEII 478 (1414)
T ss_pred hccchhhh-HHHHH
Confidence 67899999 77743
No 24
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.29 E-value=0.0001 Score=78.28 Aligned_cols=48 Identities=40% Similarity=1.052 Sum_probs=38.6
Q ss_pred ccCCCcccccCCCCCCCCCCCCceeeCC--CCCC-cCCCCCCCCCCCccccCCCCCCcEEcCCccc
Q 003113 644 AELSGCLLCRGCDFSKSGFGPRTILLCD--QCER-EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (846)
Q Consensus 644 ~e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer-~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~ 706 (846)
.+..+|+ |.+.. -+.|+-|| .|++ |||..|+ .|++.|+|.||| ++|+.
T Consensus 219 ~e~lYCf-CqqvS-------yGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 219 GEELYCF-CQQVS-------YGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred CceeEEE-ecccc-------cccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 3455787 87653 36899999 6985 6899999 588999999999 89965
No 25
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.16 E-value=0.00013 Score=78.99 Aligned_cols=36 Identities=39% Similarity=1.022 Sum_probs=30.9
Q ss_pred CCceeeCCC--CC-CcCCCCCCCCCCCccccCCCCCCcEEcCCccc
Q 003113 664 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (846)
Q Consensus 664 ~~tLL~CDq--Ce-r~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~ 706 (846)
.+.|+.||. |+ .|||..|+ .|..-|.|+||| +.|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 468999997 99 99999999 477889999999 57853
No 26
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.12 E-value=0.00016 Score=85.73 Aligned_cols=48 Identities=35% Similarity=0.916 Sum_probs=39.5
Q ss_pred CcccccCCCCCCCCcccccCCCCceeccCCCCcc-cccccCC--CCCCCCCCcccccccc
Q 003113 546 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 602 (846)
Q Consensus 546 gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~a-fH~~CL~--L~~vP~g~W~Cp~C~~ 602 (846)
...|.+|.. |....-||+||.|..+ ||.+||+ |.++|-+.|||++|.-
T Consensus 215 ~~~C~IC~~---------~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTV---------HDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeecc---------CChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 345888874 2245678999999999 9999997 6789999999999953
No 27
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.08 E-value=0.00034 Score=79.69 Aligned_cols=125 Identities=26% Similarity=0.573 Sum_probs=74.1
Q ss_pred ccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCC---CCCC-------CCccccccccccccccccccccccc
Q 003113 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFERKRFLQHDANAV 617 (846)
Q Consensus 548 ~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~---~vP~-------g~W~Cp~C~~~~~~ek~va~n~na~ 617 (846)
+|.+|...-+. |-|+++-||.|+...|-.|+|.. .+|. ..|||--|+..+.- -..+....
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~---P~CElCPn 190 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL---PHCELCPN 190 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC---CccccCCC
Confidence 68888765554 78999999999999999999843 3443 35999999765320 00000011
Q ss_pred ccccccCcCchhhhh----------------hhhhhhhccccc---cCCCcccccCCCCCCCCCCCCceeeCC--CCCCc
Q 003113 618 EAGRVSGVDSVEQIT----------------KRCIRIVKNLEA---ELSGCLLCRGCDFSKSGFGPRTILLCD--QCERE 676 (846)
Q Consensus 618 a~Gr~~Gvd~ieqi~----------------~rc~R~~kd~e~---e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~ 676 (846)
..|.+...|.-.++. .+|.-.+.++.. --..|..|...-|.+.| ..+.|| .|..+
T Consensus 191 ~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtG----vci~CdaGMCk~Y 266 (707)
T KOG0957|consen 191 RFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTG----VCIRCDAGMCKEY 266 (707)
T ss_pred cCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcc----eeeeccchhhhhh
Confidence 112222222111111 111111111111 11349999887776654 578899 79999
Q ss_pred CCCCCCCCCC
Q 003113 677 FHVGCLKKHK 686 (846)
Q Consensus 677 YHv~CL~p~~ 686 (846)
||+.|.+..+
T Consensus 267 fHVTCAQk~G 276 (707)
T KOG0957|consen 267 FHVTCAQKLG 276 (707)
T ss_pred hhhhHHhhhc
Confidence 9999988765
No 28
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.01 E-value=0.00027 Score=82.93 Aligned_cols=140 Identities=24% Similarity=0.497 Sum_probs=82.7
Q ss_pred eccccccCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCcccccccccccccccccccc
Q 003113 537 LLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDA 614 (846)
Q Consensus 537 ll~G~~~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~~ek~va~n~ 614 (846)
+-.||-.....+|..|... .|.+.+++|+.|+-+||-+|.. ...+|.|.|+|+.|...-+...-++
T Consensus 59 l~~gWrC~~crvCe~c~~~---------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lp--- 126 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTT---------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLP--- 126 (694)
T ss_pred hcCCcccCCceeeeecccc---------CCcccccccccccccccccccCCccccccCcccccHHHHhhhhcccccc---
Confidence 3456666677778888731 1678999999999999999996 6789999999999965432221111
Q ss_pred cccccccccCcCchhhhhhhhhhhhccccccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCC
Q 003113 615 NAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELP 694 (846)
Q Consensus 615 na~a~Gr~~Gvd~ieqi~~rc~R~~kd~e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP 694 (846)
| ...++.+. ...|+ ......+|.+|-..- +. ...-.++.|++|.+|-|-.|-.-..+.-+...-
T Consensus 127 -----g--~s~~~~~~-~~~~~-----~c~s~~~cPvc~~~Y--~~-~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~v 190 (694)
T KOG4443|consen 127 -----G--LSLDLQEG-YLQCA-----PCASLSYCPVCLIVY--QD-SESLPMVCCSICQRWSHGGCDGISDDKYMQAQV 190 (694)
T ss_pred -----c--cchhhhcc-Ccccc-----cccccccCchHHHhh--hh-ccchhhHHHHHhcccccCCCCccchHHHHHHhh
Confidence 1 01111100 00010 111235688886431 11 123345899999999999998654221111111
Q ss_pred CCCcEEcCCcc
Q 003113 695 KGKWFCCMDCS 705 (846)
Q Consensus 695 ~g~WfC~~~C~ 705 (846)
.-.+.| ..|.
T Consensus 191 D~~~~C-S~CR 200 (694)
T KOG4443|consen 191 DLQYKC-STCR 200 (694)
T ss_pred hhhccc-ceee
Confidence 135667 7775
No 29
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.86 E-value=0.00024 Score=54.78 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=21.1
Q ss_pred CceeccCCCCcccccccCCCCCCCCC-Cccccccc
Q 003113 568 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 601 (846)
Q Consensus 568 G~Ll~CD~Cp~afH~~CL~L~~vP~g-~W~Cp~C~ 601 (846)
+.|+.|++|.-..|+.|+|+..+|++ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46999999999999999999999988 79999884
No 30
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.65 E-value=0.00072 Score=77.15 Aligned_cols=57 Identities=30% Similarity=0.777 Sum_probs=42.7
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCC----CCcEEcCCc--cchhHHHHhh
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK----GKWFCCMDC--SRINSVLQNL 714 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~----g~WfC~~~C--~~I~s~LqkL 714 (846)
-.|.+|+++. +-..+++||.|...||++||.| ||..+|+ +.|.| ..| .......+.+
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sECdk~esSD~e~ei 607 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SECDKNESSDSEQEI 607 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-cccccccCcchhhhh
Confidence 3599999763 4556799999999999999998 6777775 46999 899 3333334443
No 31
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.34 E-value=0.0017 Score=64.58 Aligned_cols=26 Identities=38% Similarity=1.046 Sum_probs=23.3
Q ss_pred ccccccCC--CCCCCCCCcccccccccc
Q 003113 579 AFHKECAS--LSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 579 afH~~CL~--L~~vP~g~W~Cp~C~~~~ 604 (846)
+||..||+ |+.+|+|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 59999996 899999999999998653
No 32
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.94 E-value=0.0046 Score=77.25 Aligned_cols=56 Identities=25% Similarity=0.686 Sum_probs=43.5
Q ss_pred ccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccchhHH
Q 003113 644 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 710 (846)
Q Consensus 644 ~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I~s~ 710 (846)
.+...|.+|.+++. .+-+.+++||.|..++|++|.. .+-+|+|.|+| ..|-.-...
T Consensus 217 ~~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~ 272 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQR 272 (1051)
T ss_pred CCCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCc
Confidence 34567999998763 2446899999999999999996 34578999999 888544433
No 33
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.89 E-value=0.0039 Score=62.11 Aligned_cols=27 Identities=41% Similarity=1.032 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCCccccCCCCCCcEEcCCccch
Q 003113 676 EFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (846)
Q Consensus 676 ~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I 707 (846)
.||+.||+| ||.++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 499999998 899999999999 888643
No 34
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.12 E-value=0.0098 Score=70.45 Aligned_cols=51 Identities=29% Similarity=0.948 Sum_probs=41.0
Q ss_pred cCCCcccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccc
Q 003113 645 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (846)
Q Consensus 645 e~~~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~ 706 (846)
-+++|.+|..- -|..++.|+.|| .|.-+.|..|.. +-++|.|.||| ..|..
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 35789999742 344578899999 799999999994 45789999999 77743
No 35
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.11 E-value=0.0047 Score=79.65 Aligned_cols=57 Identities=33% Similarity=0.807 Sum_probs=47.7
Q ss_pred cccCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccchhHH
Q 003113 643 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 710 (846)
Q Consensus 643 e~e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I~s~ 710 (846)
......|.+|...+ +...++.|+.|..+||..|+++ .+..+|.+.|+| +.|..-+..
T Consensus 1105 s~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~ 1161 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRA 1161 (1404)
T ss_pred ccchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhh
Confidence 34556799998643 5678999999999999999998 688999999999 899877653
No 36
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.08 E-value=0.0054 Score=79.11 Aligned_cols=51 Identities=35% Similarity=0.917 Sum_probs=43.6
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (846)
...+.|.+|+... +...|+.||.|...||..|+. +..+|.|+|+||.|+..
T Consensus 1106 ~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4678899999631 345899999999999999996 78999999999999865
No 37
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.08 E-value=0.011 Score=68.30 Aligned_cols=53 Identities=26% Similarity=0.760 Sum_probs=41.4
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC------CCCCCCCCcccccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~------L~~vP~g~W~Cp~C~~~~ 604 (846)
-+..|.+|....++ .+..||.|++|..-||+.|.. +-.-|.+.|||-.|....
T Consensus 167 ~n~qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccceeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 34458899876666 456999999999999999995 223377889999998643
No 38
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.51 E-value=0.029 Score=64.56 Aligned_cols=47 Identities=32% Similarity=0.767 Sum_probs=36.6
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCc
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 704 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C 704 (846)
+.|.+|...+. .+.++++.||.|+-..|..|..- .-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~~----eN~naiVfCdgC~i~VHq~CYGI------~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHN----ENSNAIVFCDGCEICVHQSCYGI------QFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhcccccc----CCcceEEEecCcchhhhhhcccc------eecCcchhhh-hhh
Confidence 45888876542 24578999999999999999953 4578899998 555
No 39
>smart00258 SAND SAND domain.
Probab=92.45 E-value=0.11 Score=46.25 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.6
Q ss_pred eCCeeEeeCcCCCCceeeCcchhhhcccc-ccCCcccceeccCCccHHHHHHH
Q 003113 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (846)
Q Consensus 260 ~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 311 (846)
..+|+.+-|..+++ +-+||++||.|||. ++++=-..|.. ||.+|+.+|+.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45599999999886 89999999999995 46665566654 69999998874
No 40
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.98 E-value=0.069 Score=64.10 Aligned_cols=51 Identities=31% Similarity=0.773 Sum_probs=41.2
Q ss_pred cCCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccc
Q 003113 645 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (846)
Q Consensus 645 e~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~ 706 (846)
+.-.|-+|...|. .....|++||.|.--.|..|.. +.++|.+.|.| ..|..
T Consensus 270 edviCDvCrspD~----e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDS----EEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ccceeceecCCCc----cccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhccc
Confidence 3456999997763 2467899999999999999994 56889999999 77743
No 41
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=90.91 E-value=0.096 Score=47.54 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.5
Q ss_pred eeEEEe-----CCeeEeeCcCCCCceeeCcchhhhcccccc-CCcccceeccCCccHHHHHHH
Q 003113 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 311 (846)
Q Consensus 255 l~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I~lenG~sL~~v~~~ 311 (846)
++|++. ..|+...|-.+. .+-+||.+||.|||..+ ++=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 355554 456666677777 57999999999999875 445667877 89999998864
No 42
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=89.45 E-value=0.045 Score=42.32 Aligned_cols=33 Identities=36% Similarity=1.075 Sum_probs=17.1
Q ss_pred CceeeCCCCCCcCCCCCCCCCCCccccCCCCC-CcEEcCCc
Q 003113 665 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 704 (846)
Q Consensus 665 ~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g-~WfC~~~C 704 (846)
+.||.|+.|.-..|..|..-. ..|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~------~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS------EVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S------S--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCcc------cCCCCCcEEC-CcC
Confidence 368999999999999999642 33333 6999 444
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=87.52 E-value=0.26 Score=45.17 Aligned_cols=59 Identities=20% Similarity=0.415 Sum_probs=35.8
Q ss_pred CCcccccCCCCCCCCc--ccccCCCCceeccCCCCcccccccCC--CCCCCCCCccccccccccc
Q 003113 545 LGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~--FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~~~ 605 (846)
+++.|++|+..+.... -..-.|.=.|+.+. |.+.||..|+- +.. ....-.||.|++.+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~-~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLST-QSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHcc-ccCCCCCCCcCCeee
Confidence 4788999997543111 00011222445444 99999999994 332 234569999997653
No 44
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=84.54 E-value=0.98 Score=52.33 Aligned_cols=56 Identities=21% Similarity=0.524 Sum_probs=37.2
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCc---cccCC----CCCCcEEcCCccchh
Q 003113 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMA---DLREL----PKGKWFCCMDCSRIN 708 (846)
Q Consensus 649 C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~---~Lkev----P~g~WfC~~~C~~I~ 708 (846)
|.+|.+.|+.. ++-.||.||.|..|.|++|.=.+.+. +.... .+..++| .-|.+..
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~s 193 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTS 193 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChh
Confidence 88898887653 55679999999999999995443321 11111 1335666 8897644
No 45
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=84.38 E-value=2.7 Score=36.19 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=33.5
Q ss_pred EEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 806 YtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+..+++.++++|+.+.+.-++. .+.|-.+++..++|||
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~ 41 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGK 41 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTS
T ss_pred EEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCC
Confidence 5678889999999999988876 8899999999999997
No 46
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=84.28 E-value=1.4 Score=48.54 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=43.9
Q ss_pred chHHhhhcCCCCCceEEEEcCCcccceeeeEEEeCC------eeEeeCcCCCCceeeCcchhhhcccccc-CCcccce
Q 003113 227 TVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYI 297 (846)
Q Consensus 227 ~vk~Ll~tGlleG~~V~Y~~~~~~~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I 297 (846)
+...-..+.+++.+|-.+-....-++....|+++.- -|+|-|- -.-+||.+|=.|||... -||-.||
T Consensus 210 ~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 210 NSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred cccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 333334455666676555432212344556665544 3888886 45899999999999874 5899998
No 47
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=84.17 E-value=0.25 Score=43.62 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.6
Q ss_pred CcccccCCCCCCCCcccccCCCC-ceeccCCCCcccccccCCCCCCCCCCccccccc
Q 003113 546 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (846)
Q Consensus 546 gi~C~~C~~~vSpS~FE~HAdgG-~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~ 601 (846)
.+.|.+|...+.....+..+++. -.+.=..|.+.||..|+. .|-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 34599999877544333333332 222224599999999994 3333345899985
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=81.81 E-value=1.1 Score=39.44 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred CcccccCCCCCCCCcccccCCCCceeccC--CCCcccccccCC--C---CC----CCCCCccccccccccc
Q 003113 546 GIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--L---SS----IPQGDWYCKYCQNMFE 605 (846)
Q Consensus 546 gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD--~Cp~afH~~CL~--L---~~----vP~g~W~Cp~C~~~~~ 605 (846)
...|.+|...+.. .+.-..+.|+ .|...||..||. + .. .---.+.||.|...+.
T Consensus 2 ~~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3569999865431 0222348998 899999999994 1 11 1112367999987553
No 49
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=80.29 E-value=1.4 Score=48.90 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=59.4
Q ss_pred CCCceeccCCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccccccCcCchhhhhhhhhhhhcccccc
Q 003113 566 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 645 (846)
Q Consensus 566 dgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ek~va~n~na~a~Gr~~Gvd~ieqi~~rc~R~~kd~e~e 645 (846)
+++....|-.|-..+|-....+.-+-.+.+.|--|..++.+... + ....+-.++. +.+... ...
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc---~--l~~~~~~~n~---~N~YNh--------Nfq 127 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC---N--LLEDKDAENS---ENLYNH--------NFQ 127 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc---c--cccccccccc---hhhhhh--------hhc
Confidence 56688899999988888887776677788999777665543211 0 0000111111 111100 011
Q ss_pred CCCcccccCCCCCCCCCCCCceeeCCCCCCcCC-CCCCCCC
Q 003113 646 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 685 (846)
Q Consensus 646 ~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YH-v~CL~p~ 685 (846)
..+|. |......-.-...+.|++|-.|+-||| .+|++..
T Consensus 128 G~~C~-Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 128 GLFCK-CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ceeEE-ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 12343 554432211124678999999999999 9999864
No 50
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=79.63 E-value=0.14 Score=40.35 Aligned_cols=43 Identities=23% Similarity=0.615 Sum_probs=27.2
Q ss_pred ccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccc
Q 003113 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 601 (846)
Q Consensus 548 ~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~ 601 (846)
.|.+|...+.. +..++... |.+.||..|+. .|-.....||.|+
T Consensus 2 ~C~IC~~~~~~--------~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED--------GEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT--------TSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCcCCChhhcC--------CCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 58889875542 34455444 99999999994 1112234899885
No 51
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.35 E-value=1.4 Score=37.36 Aligned_cols=34 Identities=26% Similarity=0.833 Sum_probs=29.6
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~ 586 (846)
.+-.|.+|+..+. ++++++.|..|...||..|..
T Consensus 4 ~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCccc--------CCCCEEECCCCCCcccHHHHh
Confidence 4568999998776 589999999999999999983
No 52
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=73.46 E-value=6 Score=33.51 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=31.6
Q ss_pred eeCCeEEEEEEEEeeCc-----eeeeeeeeeeccccccC
Q 003113 811 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGK 844 (846)
Q Consensus 811 e~~~evVSaA~lRv~G~-----~vAEmPlVaTr~~~qgq 844 (846)
+.+|+||+.+.+++... ..+.+-.+++..+||||
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~ 40 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQ 40 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTS
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhC
Confidence 67899999999999987 49999999999999997
No 53
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=69.89 E-value=1.8 Score=38.79 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.0
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCCCC
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 686 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDq--Cer~YHv~CL~p~~ 686 (846)
..|.+|+.. .+..+.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 359999853 257899995 99999999988764
No 54
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.15 E-value=3.3 Score=35.15 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=27.6
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCC
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~ 686 (846)
..|.+|++.- .+.+.++.|..|...||-.|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999641 1357899999999999999996543
No 55
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=68.37 E-value=2.6 Score=53.49 Aligned_cols=44 Identities=27% Similarity=0.755 Sum_probs=38.2
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCcc
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 705 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~ 705 (846)
.|.+|.. .+.++.|..|++.||..|+.+ ++.+.|...|-| ..|.
T Consensus 346 hcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 346 HCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred cccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 4889973 468999999999999999997 788899999999 7774
No 56
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=65.93 E-value=2.6 Score=39.38 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCC--CCCcCCCCCCCCCC
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 686 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDq--Cer~YHv~CL~p~~ 686 (846)
..|.+|+.. .+..+.|.. |.+.||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 469999964 367999998 99999999987655
No 57
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.86 E-value=6.5 Score=44.70 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=31.8
Q ss_pred cccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccccccc
Q 003113 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 547 i~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 605 (846)
+.|.+|.+.+-+ |+.|-==-|.+.||..|++..-... .-+||.|++.+.
T Consensus 230 ~~CaIClEdY~~---------GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEK---------GDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeeccccc---------CCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCC
Confidence 799999976542 3332224466999999997321111 347999997643
No 58
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=57.48 E-value=5.7 Score=40.87 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=26.3
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCC
Q 003113 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 686 (846)
Q Consensus 649 C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~ 686 (846)
|..|+..+. ....+.|+.|..|-.+||..||.+..
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCcc
Confidence 777854221 23457899999999999999998753
No 59
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=55.37 E-value=2.6 Score=48.65 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=22.6
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCC
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 685 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~ 685 (846)
-|.+|+..-....|.+ +.+.=--=++-||++|.+..
T Consensus 396 rCs~C~~PI~P~~G~~--etvRvvamdr~fHv~CY~CE 431 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKD--ETVRVVAMDRDFHVNCYKCE 431 (468)
T ss_pred chhhccCCccCCCCCc--ceEEEEEccccccccceehh
Confidence 4999998765544433 22222234789999998764
No 60
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=53.67 E-value=24 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=31.1
Q ss_pred EEEeeCCeEEEEEEEEeeC--ceeeeeeeeeeccccccC
Q 003113 808 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGK 844 (846)
Q Consensus 808 avLe~~~evVSaA~lRv~G--~~vAEmPlVaTr~~~qgq 844 (846)
.++..++++|+.+.+.... .+.+++=.+++..++|||
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~ 40 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGK 40 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCc
Confidence 3556789999999888876 578999999999999986
No 61
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=52.02 E-value=6.7 Score=37.29 Aligned_cols=50 Identities=22% Similarity=0.603 Sum_probs=33.2
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceecc------CCC---CcccccccCC------C-CCCCCCCcccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 602 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~C------D~C---p~afH~~CL~------L-~~vP~g~W~Cp~C~~ 602 (846)
...|..|..|.+... +....| ..| ...|.-.||- + +...+++|.||.|+.
T Consensus 4 ~~~g~~CHqCrqKt~----------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTL----------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCCchhhcCCCC----------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 356788999986432 223344 445 8889888882 2 223567899999985
No 62
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=48.92 E-value=15 Score=38.65 Aligned_cols=36 Identities=31% Similarity=0.658 Sum_probs=26.7
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCC
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 684 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p 684 (846)
.|.+|...+ -.=.|+......|..|...||..|...
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 377776542 123456667899999999999999973
No 63
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=47.87 E-value=3 Score=48.08 Aligned_cols=37 Identities=32% Similarity=0.794 Sum_probs=28.3
Q ss_pred ccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccc
Q 003113 548 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 548 ~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (846)
.|.-|++.|+ |+-.-|..-.+.||..|. .|..|....
T Consensus 276 iC~~C~K~V~----------g~~~ac~Am~~~fHv~CF----------tC~~C~r~L 312 (468)
T KOG1701|consen 276 ICAFCHKTVS----------GQGLAVEAMDQLFHVQCF----------TCRTCRRQL 312 (468)
T ss_pred hhhhcCCccc----------CcchHHHHhhhhhcccce----------ehHhhhhhh
Confidence 7999999876 455678878889998886 577777543
No 64
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=47.67 E-value=19 Score=39.63 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=36.1
Q ss_pred eEEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 805 fYtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+-+..++-+|+|||+|..+-++-..|++-.|.|..+||||
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~k 216 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGK 216 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccc
Confidence 4556677778999999999999999999999999999997
No 65
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=47.44 E-value=48 Score=30.51 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhcCCCCcCCCCCCccccccccccCCCcccceeEEEEEeeCCeEEEEEE-----EEeeCce--eeeeeeee
Q 003113 764 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGI-----LRVFGQE--VAELPLVA 836 (846)
Q Consensus 764 La~AL~Im~EcF~PiiD~rSgrDLIp~MVygr~~~rldF~GfYtavLe~~~evVSaA~-----lRv~G~~--vAEmPlVa 836 (846)
..+...++.++|.+-.++. ..+-|..+.-. .+ ++++.+.+++||+.+. +.++|+. +|-+==|+
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~~~---~~-~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNLYG---PG-RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHHHH---TT-EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcccC---cC-cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4566778888995433331 22333222111 12 5677777999999884 4566874 78889999
Q ss_pred eccccccC
Q 003113 837 TSKINHGK 844 (846)
Q Consensus 837 Tr~~~qgq 844 (846)
|..+||||
T Consensus 80 v~p~~R~~ 87 (127)
T PF13527_consen 80 VDPEYRGR 87 (127)
T ss_dssp E-GGGTTS
T ss_pred ECHHHcCC
Confidence 99999997
No 66
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.24 E-value=22 Score=42.99 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCC
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 684 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p 684 (846)
+.|..|+..+ ..--+|+.|++.|+..+|..
T Consensus 143 g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 143 GTCPKCGGED--------ARGDQCENCGRTLDPTELIN 172 (558)
T ss_pred ccCCCcCccc--------cCcchhhhccCcCCchhcCC
Confidence 4688888432 11127999999999999754
No 67
>PHA02929 N1R/p28-like protein; Provisional
Probab=46.29 E-value=8 Score=41.86 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=32.6
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (846)
..+..|.+|...+.... .....+..=..|.+.||..|+. .|-...-.||.|+..+
T Consensus 172 ~~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 34578999997543210 0000111223678999999994 2333445899999764
No 68
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=46.19 E-value=30 Score=38.10 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=30.7
Q ss_pred cee-EEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 803 GGM-YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 803 ~Gf-YtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
.|| ||++ .+++|||.|+-.+.+...+|+- |+|..+||||
T Consensus 164 ~G~Gf~i~--~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~k 203 (265)
T PF12746_consen 164 NGFGFCIL--HDGEIVSGCSSYFVYENGIEID-IETHPEYRGK 203 (265)
T ss_dssp H--EEEEE--ETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTS
T ss_pred cCcEEEEE--ECCEEEEEEEEEEEECCEEEEE-EEECHHhhcC
Confidence 466 5554 4899999999999999999986 7999999997
No 69
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=44.59 E-value=6.6 Score=29.39 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=20.3
Q ss_pred eccCCCCcccccccCC-CCCCCCCCcccccccc
Q 003113 571 LPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 602 (846)
Q Consensus 571 l~CD~Cp~afH~~CL~-L~~vP~g~W~Cp~C~~ 602 (846)
+.-..|.+.||..|+. +.. .+...||.|+.
T Consensus 13 ~~~~~C~H~~c~~C~~~~~~--~~~~~Cp~C~~ 43 (45)
T cd00162 13 VVLLPCGHVFCRSCIDKWLK--SGKNTCPLCRT 43 (45)
T ss_pred eEecCCCChhcHHHHHHHHH--hCcCCCCCCCC
Confidence 3344588999999995 111 14678999974
No 70
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=43.82 E-value=12 Score=33.04 Aligned_cols=35 Identities=26% Similarity=0.682 Sum_probs=13.5
Q ss_pred CcccccCCCCCCCCCCCCceeeCC--CCCCcCCCCCCCCC
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKH 685 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CD--qCer~YHv~CL~p~ 685 (846)
.|.||-..-. ..+....+.|+ .|...||..||...
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 3889975421 11234568898 99999999999753
No 71
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=43.82 E-value=49 Score=29.74 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=28.7
Q ss_pred eEEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 805 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 805 fYtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
....|++.+++||+.+.++ .-+++..+.+..+||||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~ 79 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGR 79 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTS
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCC
Confidence 5678889999999999987 23347889999999987
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.12 E-value=6.4 Score=43.23 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=34.5
Q ss_pred CCcccccCCCCCCCCcccccCCCCceec---cCCCCcccccccCCCCCCCCCCcccccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLP---CDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 604 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~---CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~ 604 (846)
++-+|.+|.+.+..+. |.+-++. ==.|.+.||..|+.---+-...-.||.|+.++
T Consensus 223 ~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 5678999998655442 2222221 11488999999995222223346899998754
No 73
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.77 E-value=14 Score=34.54 Aligned_cols=31 Identities=35% Similarity=0.952 Sum_probs=26.5
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCC--CCcccccccCC
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECAS 586 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~--Cp~afH~~CL~ 586 (846)
....|.+|++ ..|-.+-|.. |...||..|.-
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHHH
Confidence 4678999996 5788999986 99999999983
No 74
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=40.42 E-value=26 Score=36.83 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=34.0
Q ss_pred CCCcccccCCC--CCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccc
Q 003113 544 GLGIICHCCNS--EVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (846)
Q Consensus 544 ~~gi~C~~C~~--~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (846)
.-|.+|..|+. .+-|- +-....-|+.|...||..|..- -.||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF------~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPF------QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCC------CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 45788999984 33342 3457889999999999999952 23999963
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=38.70 E-value=7.5 Score=35.59 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=31.9
Q ss_pred cccccCCCCCCCCcccccC---CCCc-eeccCCCCcccccccCCCCCCCCCCccccccccccc
Q 003113 547 IICHCCNSEVSPSQFEAHA---DGGN-LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 547 i~C~~C~~~vSpS~FE~HA---dgG~-Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 605 (846)
+.|.+|+..+....-|-.. .+++ -+.=..|.++||..|+. .+-+..-.||.+++.+.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~--rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY--RWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH--HHHhhCCCCCCCCceeE
Confidence 6788887544321111111 1221 11113589999999994 23233678999987653
No 76
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.23 E-value=11 Score=35.99 Aligned_cols=53 Identities=26% Similarity=0.667 Sum_probs=33.8
Q ss_pred CCcccccCCCCCCCCCCCCceeeC------CCC---CCcCCCCCCCCCCCccc-cCCCCCCcEEcCCccch
Q 003113 647 SGCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKHKMADL-RELPKGKWFCCMDCSRI 707 (846)
Q Consensus 647 ~~C~iCg~~dfs~sg~~~~tLL~C------DqC---er~YHv~CL~p~~~~~L-kevP~g~WfC~~~C~~I 707 (846)
..|+.|+.... +..+.| ..| ...|--.||...--.++ +.+...+|.| +.|..|
T Consensus 8 ~~CHqCrqKt~-------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTL-------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRGI 70 (105)
T ss_pred CCchhhcCCCC-------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCCe
Confidence 35999986431 233456 566 88899999876532222 2344679999 777664
No 77
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=37.20 E-value=40 Score=29.96 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.7
Q ss_pred CeEEEEEEEEeeCceeeeeeeeeecc
Q 003113 814 SSVVSAGILRVFGQEVAELPLVATSK 839 (846)
Q Consensus 814 ~evVSaA~lRv~G~~vAEmPlVaTr~ 839 (846)
|++|+-..+..-|+.++++||+|+..
T Consensus 63 G~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 63 GQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCEEEEEEEEECCEEEEEEEEEECCc
Confidence 67888899999999999999999865
No 78
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.76 E-value=5.1 Score=36.33 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=34.5
Q ss_pred CcccccCCCCCCCCc--ccccCCCCceeccCCCCcccccccCC-CCCCCCCCccccccccccc
Q 003113 546 GIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 546 gi~C~~C~~~vSpS~--FE~HAdgG~Ll~CD~Cp~afH~~CL~-L~~vP~g~W~Cp~C~~~~~ 605 (846)
+..|++|+..+..+. ...-.|.=.|+.- .|...||..|+. .-..|...-+||.|++.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999986543210 0000011123222 467889999984 3355666789999998754
No 79
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=36.21 E-value=57 Score=32.98 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=33.3
Q ss_pred cceeEEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 802 FGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 802 F~GfYtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+...+.++.+.++++|+.+.+..++...+++=+++...++|||
T Consensus 99 ~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~ 141 (194)
T PRK10975 99 FDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGR 141 (194)
T ss_pred cCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCC
Confidence 3334444555678999999998877677888889999999997
No 80
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.69 E-value=14 Score=43.29 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (846)
+-.-|.+|.+-+.+| -..+.=-.|.++||-.|+. .| ++-.||-|+.
T Consensus 174 ELPTCpVCLERMD~s--------~~gi~t~~c~Hsfh~~cl~--~w--~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS--------TTGILTILCNHSFHCSCLM--KW--WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCcc--------ccceeeeecccccchHHHh--hc--ccCcChhhhh
Confidence 456799999766543 2334445577999999994 33 2567888875
No 81
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=35.29 E-value=13 Score=31.02 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=27.6
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 578 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~ 578 (846)
++..|.-|+..+++..+..-..+.+++.|+.|.+
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4458999999998887766666689999999976
No 82
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=33.82 E-value=11 Score=45.42 Aligned_cols=37 Identities=32% Similarity=0.773 Sum_probs=27.9
Q ss_pred CCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccchhHH
Q 003113 662 FGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 710 (846)
Q Consensus 662 ~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I~s~ 710 (846)
|..++...|+.|...||..|+.... .||+.|.++...
T Consensus 526 F~~~~~~rC~~C~avfH~~C~~r~s------------~~CPrC~R~q~r 562 (580)
T KOG1829|consen 526 FETRNTRRCSTCLAVFHKKCLRRKS------------PCCPRCERRQKR 562 (580)
T ss_pred cccccceeHHHHHHHHHHHHHhccC------------CCCCchHHHHHH
Confidence 4456778999999999999997532 134899877654
No 83
>PRK07757 acetyltransferase; Provisional
Probab=33.67 E-value=67 Score=30.68 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=31.2
Q ss_pred EEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 809 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 809 vLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
++..++++|+.+.+.+++...+++=-|++..+|||+
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCC
Confidence 445689999999999988888988889999999997
No 84
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=33.29 E-value=24 Score=40.18 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=34.2
Q ss_pred ceeeCCCCCCcCCCCC--CCCCCCccccCCCCCCcEEcCCccchhHHHHh
Q 003113 666 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 713 (846)
Q Consensus 666 tLL~CDqCer~YHv~C--L~p~~~~~LkevP~g~WfC~~~C~~I~s~Lqk 713 (846)
.++.|+.|..|||..| ++. +-.+..+...|+| ..|+.....++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 5789999999999999 654 2344445688999 999988766654
No 85
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=33.21 E-value=79 Score=34.04 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=31.6
Q ss_pred eeEEEEEeeCCeEEEEEEEEe-eCceeeeeeeeeeccccccC
Q 003113 804 GMYCAILTVNSSVVSAGILRV-FGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 804 GfYtavLe~~~evVSaA~lRv-~G~~vAEmPlVaTr~~~qgq 844 (846)
+.+..+++.++++|+.+.+.+ .+...|||=-+++..+||||
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~ 198 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGK 198 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCC
Confidence 344456667999999998754 34457899889999999997
No 86
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=33.02 E-value=30 Score=44.04 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=38.0
Q ss_pred CCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC--CCCCCCCCccccccccc
Q 003113 545 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 603 (846)
Q Consensus 545 ~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~--L~~vP~g~W~Cp~C~~~ 603 (846)
....|..|.+.-. . .++.|++|...||..|.. +..+++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 4456778875322 1 344999999999999996 78899999999999754
No 87
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.84 E-value=28 Score=41.71 Aligned_cols=45 Identities=29% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCCcccccCCCCceeccCCCCcccccccCCCC-CCC--CCCcccccccc
Q 003113 557 SPSQFEAHADGGNLLPCDGCPRAFHKECASLS-SIP--QGDWYCKYCQN 602 (846)
Q Consensus 557 SpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~-~vP--~g~W~Cp~C~~ 602 (846)
+++.||.|. .|..+.|+.|-+.||..|+.-. +.+ +..|.||.|..
T Consensus 60 d~~cfechl-pg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 60 DPFCFECHL-PGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CcccccccC-CcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 444555666 5678899999999999999522 233 24599999874
No 88
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=31.93 E-value=30 Score=30.47 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeeEeeEEEEEEeccCCCCCCccc
Q 003113 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (846)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (846)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 89
>PRK03624 putative acetyltransferase; Provisional
Probab=30.51 E-value=71 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=28.8
Q ss_pred EEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 806 YtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+..|+..++++|+.+.+...+ ..+.+-.|++..+||||
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~ 83 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGR 83 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCC
Confidence 345566789999988887654 44667788999999997
No 90
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=30.21 E-value=1.1e+02 Score=32.73 Aligned_cols=39 Identities=5% Similarity=-0.030 Sum_probs=30.9
Q ss_pred EEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 806 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 806 YtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+..|...+++||+.+.+..++...+++--|++..+||||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~ 85 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRR 85 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCC
Confidence 345556789999999988875555677778999999997
No 91
>PLN02400 cellulose synthase
Probab=30.00 E-value=66 Score=41.72 Aligned_cols=58 Identities=24% Similarity=0.626 Sum_probs=45.5
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (846)
.-++.+|.+|+..+-.. ++|.-.+-|..|.---.-.|+.. +..+|.=.||.|+..+.+
T Consensus 33 ~~~gqiCqICGD~VG~t-----~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 33 NLNGQICQICGDDVGVT-----ETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccCCceeeecccccCcC-----CCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccc
Confidence 35778999999765443 37777799999988888889864 567889999999977654
No 92
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=29.71 E-value=33 Score=40.59 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=37.4
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 602 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~ 602 (846)
.+...|++|. ++|.+++|+.|..++|..|... ..|+..|.|..|..
T Consensus 87 ~~~~~c~vc~------------~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 87 IEPSECFVCF------------KGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCcchhcccc------------CCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567899999 7999999999999999999865 56777788777763
No 93
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=29.59 E-value=1.2e+02 Score=27.42 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=27.4
Q ss_pred EEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 808 avLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+++..++++|+.+.+++.. ....+-.+++..++|||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~ 69 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQ 69 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCC
Confidence 4455689999999887643 44567778999999987
No 94
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=29.22 E-value=40 Score=42.97 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=37.8
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccch
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 707 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I 707 (846)
.|..|.+.. ....+ .|+.|...||..|+.+ ++..++.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 477787542 23345 9999999999999997 678889999997 777655
No 95
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.34 E-value=20 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=11.8
Q ss_pred cccccCCCCCCCCCCCCceeeCCCCCCcCCCCC
Q 003113 649 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGC 681 (846)
Q Consensus 649 C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~C 681 (846)
|..|+... +......|.+|+-..|..|
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhc
Confidence 78888652 2246899999999999887
No 96
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.27 E-value=13 Score=33.87 Aligned_cols=57 Identities=23% Similarity=0.612 Sum_probs=25.8
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCccccccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 605 (846)
.-++.+|.+|+..+-. .++|.-.+.|..|..-....|+.. +..+|.-.||.|+..+.
T Consensus 6 ~~~~qiCqiCGD~VGl-----~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGL-----TENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B--
T ss_pred hcCCcccccccCcccc-----CCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCcc
Confidence 3467899999975543 337777799999987777778754 45567889999986554
No 97
>PLN02436 cellulose synthase A
Probab=27.51 E-value=66 Score=41.67 Aligned_cols=58 Identities=22% Similarity=0.628 Sum_probs=45.2
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (846)
.-.+.+|.+|+..+-.. ++|.-.+-|..|.-.-...|+.- +..+|.-.||.|+..+.+
T Consensus 33 ~~~~~iCqICGD~Vg~t-----~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT-----VDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccCCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhh
Confidence 34678999999766443 37777799999998888899954 567789999999876543
No 98
>PHA02926 zinc finger-like protein; Provisional
Probab=27.39 E-value=31 Score=37.32 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=33.2
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC-CCC---CCCCCcccccccccc
Q 003113 543 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-LSS---IPQGDWYCKYCQNMF 604 (846)
Q Consensus 543 ~~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~-L~~---vP~g~W~Cp~C~~~~ 604 (846)
......|++|.+.+..-.-+...-.|-|. .|.+.|+..|+. +.. -......||.|+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~---~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLD---SCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccC---CCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 35668899999654210000000124343 466889999984 221 122358899999764
No 99
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=27.13 E-value=18 Score=31.96 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeeEeeEEEEEEeccCCCCCCcc
Q 003113 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (846)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (846)
=-.|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999999887655
No 100
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.79 E-value=1.5e+02 Score=33.03 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=51.3
Q ss_pred eeeEEEeCCeeEeeCcCCCCceeeCcchhhhccccccCCcccceeccCCccHHHHHHHhhcCCh-hhHHHHHHHHhcCCC
Q 003113 254 GLRGIIRDGGILCSCSLCNGCRVIPPSKFEIHACKQYRRASQYICFENGKSLLEVLRACRSVPL-PMLKATLQSALSSLP 332 (846)
Q Consensus 254 ~l~G~i~~~GilC~C~~C~~~~v~s~s~FE~HAG~~~~~p~~~I~lenG~sL~~v~~~~~~~~l-~~l~~~i~~~~g~~~ 332 (846)
..-|.|...... +|..|| +--||+ ...+|.+ +|-++|.+|+++++. .+.. +.|.++|+.++..-|
T Consensus 242 ~~ig~I~~~s~~-fC~~Cn-r~rlt~-~G~l~~C---------l~~~~~~~l~~~l~~--~~~~~~~l~~~~~~~~~~k~ 307 (329)
T PRK13361 242 IHIGFISPHSHN-FCHECN-RVRVTA-EGQLLLC---------LGNEHASDLRSILRE--GPGDIERLKAAILAAINLKP 307 (329)
T ss_pred eEEEEEcCCCcc-ccccCC-eEEEcc-CCcEEec---------CCCCCCcchHHHHhc--CCCcHHHHHHHHHHHHHcCc
Confidence 568999987776 999998 445666 6677776 677889999988765 4445 379999999888765
Q ss_pred ccC
Q 003113 333 EEK 335 (846)
Q Consensus 333 ~~~ 335 (846)
...
T Consensus 308 ~~~ 310 (329)
T PRK13361 308 KGH 310 (329)
T ss_pred ccc
Confidence 433
No 101
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.99 E-value=36 Score=30.42 Aligned_cols=32 Identities=38% Similarity=0.967 Sum_probs=25.9
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccC--CCCcccccccCC
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS 586 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD--~Cp~afH~~CL~ 586 (846)
.....|..|.+ ..|-.+-|. +|...||..|.-
T Consensus 34 ~~~~~C~~C~~-----------~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKK-----------KGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCC-----------CCCeEEEEeCCCCCcEEChHHHc
Confidence 45568999995 348888886 599999999983
No 102
>PRK07922 N-acetylglutamate synthase; Validated
Probab=25.93 E-value=98 Score=31.02 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=31.3
Q ss_pred EEEe-eCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 808 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 808 avLe-~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
.|++ .++++|+.+.+.+.....+++-.++...++|||
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgk 85 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGR 85 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCC
Confidence 3556 789999999887776778999999999999997
No 103
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=16 Score=42.05 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=30.1
Q ss_pred cccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCC-c--cccccccc
Q 003113 547 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGD-W--YCKYCQNM 603 (846)
Q Consensus 547 i~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~-W--~Cp~C~~~ 603 (846)
-.|.+|-. .-| ...+|-.=..|++.||..|| ..|-+++ | -||.|+-+
T Consensus 5 A~C~Ic~d-~~p-------~~~~l~~i~~cGhifh~~cl--~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICID-GRP-------NDHELGPIGTCGHIFHTTCL--TQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEecc-CCc-------cccccccccchhhHHHHHHH--HHHHccCCccCCCCceeec
Confidence 46888942 222 12345455568999999999 4444443 5 69999844
No 104
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=24.86 E-value=1.1e+02 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=28.5
Q ss_pred EEEeeCCeEEEEEEEEee-----CceeeeeeeeeeccccccC
Q 003113 808 AILTVNSSVVSAGILRVF-----GQEVAELPLVATSKINHGK 844 (846)
Q Consensus 808 avLe~~~evVSaA~lRv~-----G~~vAEmPlVaTr~~~qgq 844 (846)
.|++.++++|+.+.+++. +...+++--+.+..++|||
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~ 91 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGL 91 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCC
Confidence 356778999988888753 3336788888899999997
No 105
>PRK10314 putative acyltransferase; Provisional
Probab=24.84 E-value=1.2e+02 Score=30.07 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhcCCCCcCCCCCCccccccccccCCCccc--ceeEEEEEeeCCeEEEEEEEEeeCc--eeeeeeeeeec
Q 003113 763 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF--GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATS 838 (846)
Q Consensus 763 kLa~AL~Im~EcF~PiiD~rSgrDLIp~MVygr~~~rldF--~GfYtavLe~~~evVSaA~lRv~G~--~vAEmPlVaTr 838 (846)
.+..|+.+=++-|..- -+.+ |. ++.+.|. ..++.+ +..++++|+.|.++..+. ..++|=-|++.
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h~~-~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~ 83 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRHIL-GWKNDELVAYARILKSDDDLEPVVIGRVIVS 83 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEEEE-EEECCEEEEEEEEecCCCCCCCEEEEEEEEC
Confidence 4677888877887421 1111 11 2333333 234433 345889988887776543 36788889999
Q ss_pred cccccC
Q 003113 839 KINHGK 844 (846)
Q Consensus 839 ~~~qgq 844 (846)
.+||||
T Consensus 84 ~~~rG~ 89 (153)
T PRK10314 84 EALRGE 89 (153)
T ss_pred HHHhCC
Confidence 999997
No 106
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.31 E-value=52 Score=34.30 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=47.5
Q ss_pred cccceecc--CCccHHHHHHHhhcCChhhHHHHHHHHhcCCCccCceeecccccccccccCCCCCCCCCCCcccc
Q 003113 293 ASQYICFE--NGKSLLEVLRACRSVPLPMLKATLQSALSSLPEEKSFACVRCKGTFPITCVGKTGPGPLCNSCVK 365 (846)
Q Consensus 293 p~~~I~le--nG~sL~~v~~~~~~~~l~~l~~~i~~~~g~~~~~~~~~c~~ck~~~~~~~~~~~~~~~~c~~c~~ 365 (846)
+..++|++ |..-+.+++..-.+-+++.|+..++... +...|.|.+|.-.+...---..+ +.|+.|-+
T Consensus 72 ~~~~~y~w~~~~~~v~~~l~~~~~~~le~Lk~~le~~~----~~~~y~C~~~~~r~sfdeA~~~~--F~Cp~Cg~ 140 (176)
T COG1675 72 SGWEEYTWYINYEKVLEVLKGKKRKILEKLKRKLEKET----ENNYYVCPNCHVKYSFDEAMELG--FTCPKCGE 140 (176)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCceeCCCCCCcccHHHHHHhC--CCCCCCCc
Confidence 34555555 8888999999999999999999998533 44589999998755322111222 77988865
No 107
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=23.74 E-value=38 Score=37.18 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=44.3
Q ss_pred eeCcchhhhccccccC-Cc--ccceeccCCccHHH---HHHHhhcC---------ChhhHHHHHHHHhcCCCc
Q 003113 276 VIPPSKFEIHACKQYR-RA--SQYICFENGKSLLE---VLRACRSV---------PLPMLKATLQSALSSLPE 333 (846)
Q Consensus 276 v~s~s~FE~HAG~~~~-~p--~~~I~lenG~sL~~---v~~~~~~~---------~l~~l~~~i~~~~g~~~~ 333 (846)
-+=.-+||.|.-++.- .| ++|=||+.+..|++ ++..|.++ +|+.++.||+.++|..|.
T Consensus 117 ~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~ 189 (263)
T KOG1642|consen 117 SFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPG 189 (263)
T ss_pred hhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCc
Confidence 3445678888877654 55 89999999998875 55665543 488899999999998864
No 108
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=41 Score=38.49 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=29.4
Q ss_pred CcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccc
Q 003113 648 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 706 (846)
Q Consensus 648 ~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~ 706 (846)
.|++|-+. +.++..|.==-|...||..|.++. |. ...=+| +.|++
T Consensus 231 ~CaIClEd------Y~~GdklRiLPC~H~FH~~CIDpW----L~---~~r~~C-PvCK~ 275 (348)
T KOG4628|consen 231 TCAICLED------YEKGDKLRILPCSHKFHVNCIDPW----LT---QTRTFC-PVCKR 275 (348)
T ss_pred eEEEeecc------cccCCeeeEecCCCchhhccchhh----Hh---hcCccC-CCCCC
Confidence 79999753 233333333578899999999874 11 112278 88976
No 109
>COG1773 Rubredoxin [Energy production and conversion]
Probab=22.57 E-value=49 Score=28.41 Aligned_cols=15 Identities=33% Similarity=1.072 Sum_probs=11.6
Q ss_pred CCCCCCCCcccccccc
Q 003113 587 LSSIPQGDWYCKYCQN 602 (846)
Q Consensus 587 L~~vP~g~W~Cp~C~~ 602 (846)
.+.+|+ +|.||.|..
T Consensus 30 fedlPd-~w~CP~Cg~ 44 (55)
T COG1773 30 FEDLPD-DWVCPECGV 44 (55)
T ss_pred hhhCCC-ccCCCCCCC
Confidence 456775 899999973
No 110
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.48 E-value=54 Score=42.44 Aligned_cols=57 Identities=26% Similarity=0.704 Sum_probs=45.1
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCCCCCCCCCCcccccccccccc
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 606 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~L~~vP~g~W~Cp~C~~~~~~ 606 (846)
-++.+|.+|+..+-.. ++|.-.+-|..|.-.-...|+.- +..+|.=.||.|+..+.+
T Consensus 15 ~~~qiCqICGD~vg~~-----~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 15 GGGQVCQICGDNVGKT-----VDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cCCceeeecccccCcC-----CCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 4678999999765543 37777799999988888889954 567889999999876643
No 111
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=21.78 E-value=21 Score=46.96 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=22.6
Q ss_pred CCCcccccccCC--C------CCCCCCCccccccccccc
Q 003113 575 GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMFE 605 (846)
Q Consensus 575 ~Cp~afH~~CL~--L------~~vP~g~W~Cp~C~~~~~ 605 (846)
+|.+.||+.|.. | ..+-.|--.||.|.+++.
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 499999999984 1 233345578999998753
No 112
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=21.71 E-value=1.6e+02 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=30.1
Q ss_pred EEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 808 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 808 avLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
++++.++++|+.+.++.+....|++=.++...++|||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGk 138 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSR 138 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCC
Confidence 3456688999999988776567888888899999997
No 113
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.77 E-value=82 Score=25.48 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=27.0
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~ 586 (846)
.....|..|.+.+.. .+..-+.|..|....|..|+.
T Consensus 9 ~~~~~C~~C~~~i~g-------~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-------LGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECS-------SSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCCcccCcccCC-------CCCCeEEECCCCChHhhhhhh
Confidence 345689999987632 356789999999999999995
No 114
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=20.66 E-value=1.1e+02 Score=31.42 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=29.4
Q ss_pred EEeeCCeEEEEEEEE-eeCceeeeeeeeeeccccccC
Q 003113 809 ILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 809 vLe~~~evVSaA~lR-v~G~~vAEmPlVaTr~~~qgq 844 (846)
|+|+++.||..|-+= +...+++||-=||-..+|||+
T Consensus 44 i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 44 IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCC
Confidence 455677777666554 899999999999999999986
No 115
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=20.34 E-value=1.9e+02 Score=27.42 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=30.3
Q ss_pred eeEEEEEeeCCeEEEEEEEEeeCceeeeeeeeeeccccccC
Q 003113 804 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGK 844 (846)
Q Consensus 804 GfYtavLe~~~evVSaA~lRv~G~~vAEmPlVaTr~~~qgq 844 (846)
+|+..+++.++++|+.+.++.+... +++--|++..++|||
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~ 78 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQ 78 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccC
Confidence 5555566788999999998876654 445667889999987
No 116
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.32 E-value=61 Score=38.98 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCcccccCCCCCCCCCCCCceeeCCCCCCcCCCCCCCCCCCccccCCCCCCcEEcCCccchh
Q 003113 646 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 708 (846)
Q Consensus 646 ~~~C~iCg~~dfs~sg~~~~tLL~CDqCer~YHv~CL~p~~~~~LkevP~g~WfC~~~C~~I~ 708 (846)
..+|.-|.. ++..+.|+-|.+.||..|+.+... .......|-| +.|..+.
T Consensus 60 d~~cfechl---------pg~vl~c~vc~Rs~h~~c~sp~~q---~r~~s~p~~~-p~p~s~k 109 (588)
T KOG3612|consen 60 DPFCFECHL---------PGAVLKCIVCHRSFHENCQSPDPQ---KRNYSVPSDK-PQPYSFK 109 (588)
T ss_pred CcccccccC---------CcceeeeehhhccccccccCcchh---hccccccccC-CcccccC
Confidence 357888874 467899999999999999987421 1122456777 6665443
No 117
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.06 E-value=67 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=22.1
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceeccCCCCcccccccCC
Q 003113 544 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 586 (846)
Q Consensus 544 ~~gi~C~~C~~~vSpS~FE~HAdgG~Ll~CD~Cp~afH~~CL~ 586 (846)
.++..|.+|++.+..+.|- ++ -|...||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~--------~~--p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFV--------VF--PCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEE--------Ee--CCCeEEeccccc
Confidence 4567799999977644331 22 234789999973
No 118
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=20.05 E-value=34 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.720 Sum_probs=15.5
Q ss_pred ceeeCCCCCCcCCCCCCCCCCCcc-ccCCCCCCcEEcC
Q 003113 666 TILLCDQCEREFHVGCLKKHKMAD-LRELPKGKWFCCM 702 (846)
Q Consensus 666 tLL~CDqCer~YHv~CL~p~~~~~-LkevP~g~WfC~~ 702 (846)
.+++||.|.++-.+. . .+.. ...+|. .|+|..
T Consensus 2 ~WVQCd~C~KWR~lp---~-~~~~~~~~~~d-~W~C~~ 34 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP---E-EVDPIREELPD-PWYCSM 34 (50)
T ss_dssp EEEE-TTT--EEEE----C-CHHCTSCCSST-T--GGG
T ss_pred eEEECCCCCceeeCC---h-hhCcccccCCC-eEEcCC
Confidence 478999999997775 1 1111 234565 999943
Done!