Query 003115
Match_columns 846
No_of_seqs 393 out of 1810
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 17:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 5E-171 1E-175 1454.4 70.0 661 100-840 5-665 (667)
2 KOG2244 Highly conserved prote 100.0 2E-168 5E-173 1368.5 61.0 694 100-839 74-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 2E-55 4.4E-60 432.7 14.9 163 102-264 1-163 (163)
4 cd02955 SSP411 TRX domain, SSP 100.0 3.3E-31 7.1E-36 252.8 14.3 123 124-246 1-123 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 2.6E-23 5.7E-28 233.3 30.1 301 351-727 25-338 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 1.3E-19 2.9E-24 203.4 31.9 331 285-693 16-373 (384)
7 cd02960 AGR Anterior Gradient 99.8 6E-20 1.3E-24 175.9 9.9 90 119-218 4-94 (130)
8 PF13899 Thioredoxin_7: Thiore 99.8 4.8E-19 1E-23 156.9 7.6 82 122-212 1-82 (82)
9 PF07221 GlcNAc_2-epim: N-acyl 99.8 1.1E-18 2.4E-23 194.2 8.2 295 360-676 1-331 (346)
10 cd02958 UAS UAS family; UAS is 99.7 3E-17 6.5E-22 154.2 9.7 105 126-242 5-111 (114)
11 cd02959 ERp19 Endoplasmic reti 99.7 4.7E-17 1E-21 154.2 9.4 112 119-243 1-114 (117)
12 COG2942 N-acyl-D-glucosamine 2 99.6 1.3E-14 2.8E-19 159.6 20.4 308 348-676 23-359 (388)
13 cd02951 SoxW SoxW family; SoxW 99.6 2.8E-15 6.2E-20 142.7 10.5 109 127-242 2-119 (125)
14 smart00594 UAS UAS domain. 99.5 2.6E-14 5.6E-19 136.3 10.3 89 120-214 9-97 (122)
15 cd02953 DsbDgamma DsbD gamma f 99.5 2.8E-14 6E-19 131.4 7.6 95 128-226 1-97 (104)
16 PF03663 Glyco_hydro_76: Glyco 99.5 2.4E-12 5.1E-17 145.1 22.5 289 286-722 7-315 (370)
17 COG1331 Highly conserved prote 99.5 3.4E-12 7.4E-17 148.7 22.4 156 377-656 407-571 (667)
18 PF07221 GlcNAc_2-epim: N-acyl 99.4 4.4E-13 9.6E-18 149.3 10.5 163 534-728 11-176 (346)
19 PRK00293 dipZ thiol:disulfide 99.4 5.8E-13 1.3E-17 157.7 11.5 112 119-241 450-569 (571)
20 COG4232 Thiol:disulfide interc 99.3 1.8E-12 3.9E-17 149.0 9.6 95 121-220 454-551 (569)
21 PF13098 Thioredoxin_2: Thiore 99.3 1.3E-12 2.8E-17 121.4 1.3 98 134-238 1-112 (112)
22 cd02991 UAS_ETEA UAS family, E 99.2 6.2E-11 1.3E-15 112.3 9.4 101 127-243 6-114 (116)
23 COG2143 Thioredoxin-related pr 99.1 3E-10 6.4E-15 110.1 10.8 126 128-260 32-167 (182)
24 PF03663 Glyco_hydro_76: Glyco 99.1 2.4E-09 5.3E-14 120.8 19.8 167 536-726 86-256 (370)
25 cd02950 TxlA TRX-like protein 99.0 5.6E-10 1.2E-14 109.4 8.2 84 130-224 12-98 (142)
26 KOG2244 Highly conserved prote 99.0 3.3E-09 7.1E-14 119.2 13.1 174 371-656 494-679 (786)
27 cd02954 DIM1 Dim1 family; Dim1 98.9 4.6E-09 9.9E-14 99.1 9.3 79 129-219 3-83 (114)
28 cd04791 LanC_SerThrkinase Lant 98.9 7.3E-08 1.6E-12 105.9 18.1 159 540-732 80-238 (321)
29 PRK10996 thioredoxin 2; Provis 98.9 7.6E-09 1.6E-13 101.0 9.2 86 127-224 41-127 (139)
30 cd02949 TRX_NTR TRX domain, no 98.9 4.2E-09 9.1E-14 95.9 6.5 79 135-225 10-89 (97)
31 PLN00410 U5 snRNP protein, DIM 98.8 7.3E-09 1.6E-13 101.3 7.4 81 128-221 15-96 (142)
32 cd02956 ybbN ybbN protein fami 98.8 1.1E-08 2.4E-13 92.5 7.5 71 136-218 10-80 (96)
33 cd02948 TRX_NDPK TRX domain, T 98.8 2.6E-08 5.7E-13 91.8 8.5 79 128-219 7-86 (102)
34 cd03000 PDI_a_TMX3 PDIa family 98.7 2.5E-08 5.4E-13 91.9 7.2 74 126-211 4-80 (104)
35 cd02984 TRX_PICOT TRX domain, 98.7 3.7E-08 8E-13 88.9 8.0 70 138-219 14-83 (97)
36 cd02986 DLP Dim1 family, Dim1- 98.7 2.1E-08 4.6E-13 94.2 5.9 76 128-217 6-81 (114)
37 PF07470 Glyco_hydro_88: Glyco 98.7 1.2E-06 2.7E-11 97.5 20.9 152 547-726 127-287 (336)
38 COG2942 N-acyl-D-glucosamine 2 98.7 1.5E-06 3.2E-11 96.7 21.0 157 538-722 110-271 (388)
39 TIGR01126 pdi_dom protein disu 98.7 7E-08 1.5E-12 87.3 8.7 78 128-216 3-82 (102)
40 cd02985 TRX_CDSP32 TRX family, 98.7 7.1E-08 1.5E-12 89.1 8.4 73 137-219 14-86 (103)
41 cd02997 PDI_a_PDIR PDIa family 98.6 1.1E-07 2.3E-12 86.7 8.3 79 128-218 7-89 (104)
42 cd02993 PDI_a_APS_reductase PD 98.6 1.1E-07 2.4E-12 88.6 8.5 79 129-217 12-92 (109)
43 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 9.5E-08 2.1E-12 87.4 7.6 79 128-218 8-86 (101)
44 KOG0910 Thioredoxin-like prote 98.6 8.8E-08 1.9E-12 93.6 7.6 93 118-226 42-138 (150)
45 cd02963 TRX_DnaJ TRX domain, D 98.6 6.9E-08 1.5E-12 90.5 6.0 72 136-219 22-94 (111)
46 PHA02278 thioredoxin-like prot 98.6 1.4E-07 3E-12 87.7 7.0 84 129-224 5-93 (103)
47 cd02961 PDI_a_family Protein D 98.5 2.6E-07 5.7E-12 82.4 8.5 79 128-217 5-85 (101)
48 TIGR01068 thioredoxin thioredo 98.5 3.6E-07 7.8E-12 82.3 9.4 78 130-219 5-83 (101)
49 cd02996 PDI_a_ERp44 PDIa famil 98.5 2.8E-07 6E-12 85.5 8.8 77 128-216 8-90 (108)
50 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 2.4E-07 5.2E-12 85.0 8.2 79 129-218 9-88 (104)
51 cd02962 TMX2 TMX2 family; comp 98.5 2E-07 4.4E-12 92.5 7.9 114 128-248 35-151 (152)
52 cd03006 PDI_a_EFP1_N PDIa fami 98.5 2.6E-07 5.7E-12 87.2 6.8 77 128-216 16-96 (113)
53 PTZ00051 thioredoxin; Provisio 98.5 4.4E-07 9.6E-12 82.1 7.5 79 128-219 8-86 (98)
54 PRK09381 trxA thioredoxin; Pro 98.4 5.7E-07 1.2E-11 83.3 8.2 73 135-219 18-90 (109)
55 cd02947 TRX_family TRX family; 98.4 3.3E-07 7.1E-12 80.1 6.1 75 131-218 3-77 (93)
56 KOG0907 Thioredoxin [Posttrans 98.4 3.7E-07 8.1E-12 85.3 6.3 77 128-217 11-87 (106)
57 cd03002 PDI_a_MPD1_like PDI fa 98.4 6.5E-07 1.4E-11 82.6 7.8 70 135-215 15-86 (109)
58 cd02999 PDI_a_ERp44_like PDIa 98.4 4.9E-07 1.1E-11 83.3 6.5 68 134-213 14-82 (100)
59 PF00085 Thioredoxin: Thioredo 98.4 6.9E-07 1.5E-11 80.8 7.0 75 131-216 9-84 (103)
60 cd02995 PDI_a_PDI_a'_C PDIa fa 98.4 1.1E-06 2.4E-11 79.9 7.8 73 130-214 9-84 (104)
61 cd03005 PDI_a_ERp46 PDIa famil 98.4 1.2E-06 2.7E-11 79.5 7.8 77 128-217 7-86 (102)
62 cd02998 PDI_a_ERp38 PDIa famil 98.3 1E-06 2.3E-11 80.1 7.2 72 134-216 14-88 (105)
63 TIGR00385 dsbE periplasmic pro 98.3 2.4E-06 5.2E-11 86.3 9.7 79 135-219 60-153 (173)
64 PTZ00443 Thioredoxin domain-co 98.3 8.9E-06 1.9E-10 85.8 13.9 70 137-218 51-120 (224)
65 cd02994 PDI_a_TMX PDIa family, 98.3 1.9E-06 4.1E-11 78.7 7.5 74 129-216 9-83 (101)
66 cd04791 LanC_SerThrkinase Lant 98.3 5.9E-05 1.3E-09 82.9 20.7 133 547-724 142-274 (321)
67 cd03001 PDI_a_P5 PDIa family, 98.3 2.6E-06 5.7E-11 77.5 8.4 77 128-215 7-84 (103)
68 cd02975 PfPDO_like_N Pyrococcu 98.3 2.2E-06 4.7E-11 80.8 8.0 96 129-243 13-111 (113)
69 cd02989 Phd_like_TxnDC9 Phosdu 98.3 1.8E-06 3.9E-11 81.4 7.5 78 128-218 12-89 (113)
70 cd02952 TRP14_like Human TRX-r 98.2 2.9E-06 6.3E-11 80.9 7.8 72 137-215 20-102 (119)
71 cd03065 PDI_b_Calsequestrin_N 98.2 2.3E-06 5E-11 81.7 6.8 96 129-241 17-118 (120)
72 cd03009 TryX_like_TryX_NRX Try 98.2 1.8E-06 3.9E-11 82.7 5.9 81 135-219 15-115 (131)
73 PRK15412 thiol:disulfide inter 98.2 4.6E-06 1E-10 85.3 9.2 79 136-220 66-159 (185)
74 COG3118 Thioredoxin domain-con 98.2 3.5E-06 7.7E-11 90.6 8.5 90 137-244 42-132 (304)
75 cd03008 TryX_like_RdCVF Trypar 98.1 8.3E-06 1.8E-10 80.5 8.8 83 134-219 21-128 (146)
76 cd03010 TlpA_like_DsbE TlpA-li 98.1 6.4E-06 1.4E-10 78.3 7.2 89 131-225 18-123 (127)
77 PF07944 DUF1680: Putative gly 98.1 0.00042 9.2E-09 82.0 24.0 272 295-720 40-331 (520)
78 TIGR01295 PedC_BrcD bacterioci 98.1 8.6E-06 1.9E-10 78.0 7.9 88 128-219 13-105 (122)
79 cd02992 PDI_a_QSOX PDIa family 98.1 6.7E-06 1.5E-10 77.6 6.9 77 129-216 9-91 (114)
80 PRK14018 trifunctional thiored 98.0 6.1E-06 1.3E-10 96.5 6.8 85 137-225 55-162 (521)
81 PF13905 Thioredoxin_8: Thiore 98.0 1.5E-05 3.2E-10 71.8 7.9 76 138-216 1-95 (95)
82 cd03011 TlpA_like_ScsD_MtbDsbE 98.0 5.6E-06 1.2E-10 78.0 5.2 88 130-225 12-115 (123)
83 PTZ00102 disulphide isomerase; 98.0 6.4E-06 1.4E-10 95.7 6.7 77 129-216 365-444 (477)
84 cd02967 mauD Methylamine utili 98.0 1.8E-05 3.8E-10 73.6 8.3 80 137-220 20-112 (114)
85 cd02966 TlpA_like_family TlpA- 98.0 8.2E-06 1.8E-10 74.0 5.7 87 130-219 11-113 (116)
86 cd02964 TryX_like_family Trypa 98.0 1.8E-05 3.9E-10 76.2 8.0 85 132-219 11-115 (132)
87 PTZ00102 disulphide isomerase; 98.0 1.2E-05 2.5E-10 93.5 7.6 78 128-216 39-119 (477)
88 cd02957 Phd_like Phosducin (Ph 98.0 2E-05 4.4E-10 73.9 7.8 68 138-219 24-91 (113)
89 COG4225 Predicted unsaturated 98.0 0.00084 1.8E-08 73.7 21.1 152 548-730 139-307 (357)
90 cd02965 HyaE HyaE family; HyaE 98.0 1.3E-05 2.7E-10 75.5 6.3 87 121-219 10-98 (111)
91 TIGR01130 ER_PDI_fam protein d 98.0 1.6E-05 3.4E-10 91.5 8.1 76 128-214 8-86 (462)
92 PHA02125 thioredoxin-like prot 98.0 2.1E-05 4.6E-10 68.5 6.9 63 142-225 2-64 (75)
93 TIGR00411 redox_disulf_1 small 97.9 2.5E-05 5.5E-10 68.1 6.2 61 142-216 3-63 (82)
94 TIGR02738 TrbB type-F conjugat 97.8 4.5E-05 9.7E-10 76.0 7.8 80 133-218 45-133 (153)
95 PLN02309 5'-adenylylsulfate re 97.8 2.7E-05 5.9E-10 89.9 7.2 72 133-214 360-433 (457)
96 TIGR00424 APS_reduc 5'-adenyly 97.8 4.8E-05 1E-09 88.0 8.7 69 135-214 368-439 (463)
97 PRK03147 thiol-disulfide oxido 97.7 0.0001 2.2E-09 73.6 8.8 84 133-219 56-154 (173)
98 cd02982 PDI_b'_family Protein 97.7 5.8E-05 1.3E-09 68.8 6.3 65 138-213 12-78 (103)
99 PF06662 C5-epim_C: D-glucuron 97.7 0.0011 2.4E-08 68.1 16.1 144 546-718 32-186 (189)
100 PF07470 Glyco_hydro_88: Glyco 97.7 0.0021 4.6E-08 71.7 19.6 150 554-730 77-227 (336)
101 cd02987 Phd_like_Phd Phosducin 97.7 0.00011 2.4E-09 74.8 8.2 68 138-219 83-150 (175)
102 KOG0908 Thioredoxin-like prote 97.7 3.9E-05 8.4E-10 80.4 4.9 67 133-213 16-84 (288)
103 TIGR02740 TraF-like TraF-like 97.7 0.00012 2.7E-09 79.4 8.8 78 135-217 163-243 (271)
104 TIGR00412 redox_disulf_2 small 97.6 7.6E-05 1.6E-09 65.3 5.0 65 143-225 3-67 (76)
105 TIGR01626 ytfJ_HI0045 conserve 97.6 0.00021 4.5E-09 73.3 8.8 97 118-225 44-169 (184)
106 cd02973 TRX_GRX_like Thioredox 97.6 0.00017 3.6E-09 60.9 6.1 63 142-219 3-65 (67)
107 cd04793 LanC LanC is the cycla 97.6 0.012 2.6E-07 66.8 23.0 142 550-729 178-331 (382)
108 TIGR02187 GlrX_arch Glutaredox 97.6 0.00022 4.7E-09 74.8 8.2 77 128-217 122-199 (215)
109 TIGR02661 MauD methylamine deh 97.5 0.00015 3.4E-09 74.4 6.8 78 136-219 72-162 (189)
110 PLN02919 haloacid dehalogenase 97.5 0.00019 4.1E-09 91.4 8.3 102 137-247 419-541 (1057)
111 cd04792 LanM-like LanM-like pr 97.5 0.0062 1.4E-07 76.1 21.3 252 365-723 475-734 (825)
112 cd03026 AhpF_NTD_C TRX-GRX-lik 97.5 0.00026 5.6E-09 64.1 6.7 74 132-220 5-79 (89)
113 cd04434 LanC_like LanC-like pr 97.5 0.018 3.9E-07 63.2 22.6 158 542-728 98-256 (343)
114 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00026 5.6E-09 67.5 6.9 87 130-219 15-121 (126)
115 PF07944 DUF1680: Putative gly 97.4 0.0018 3.8E-08 76.8 14.3 134 547-723 63-207 (520)
116 TIGR02187 GlrX_arch Glutaredox 97.4 0.00026 5.7E-09 74.1 6.3 70 136-217 18-90 (215)
117 PF08534 Redoxin: Redoxin; In 97.3 0.00065 1.4E-08 66.1 7.6 85 133-220 23-131 (146)
118 TIGR01130 ER_PDI_fam protein d 97.3 0.00054 1.2E-08 78.9 7.6 68 135-215 361-431 (462)
119 COG3533 Uncharacterized protei 97.1 0.039 8.5E-07 63.5 20.0 174 334-655 84-263 (589)
120 PF06662 C5-epim_C: D-glucuron 97.1 0.011 2.5E-07 60.8 14.5 44 380-425 30-73 (189)
121 COG4225 Predicted unsaturated 97.0 0.017 3.6E-07 63.8 15.2 152 579-739 98-253 (357)
122 cd02969 PRX_like1 Peroxiredoxi 97.0 0.0071 1.5E-07 60.7 11.6 81 137-220 24-126 (171)
123 cd02990 UAS_FAF1 UAS family, F 97.0 0.0046 1E-07 60.4 9.6 88 127-215 6-108 (136)
124 cd03007 PDI_a_ERp29_N PDIa fam 97.0 0.0015 3.3E-08 62.1 6.1 71 128-213 8-90 (116)
125 KOG2501 Thioredoxin, nucleored 96.9 0.0028 6.1E-08 63.0 7.8 87 129-219 24-131 (157)
126 cd01659 TRX_superfamily Thiore 96.9 0.0014 3E-08 51.8 4.4 63 142-213 1-63 (69)
127 PLN02399 phospholipid hydroper 96.9 0.0074 1.6E-07 64.4 11.1 24 132-155 93-116 (236)
128 PTZ00062 glutaredoxin; Provisi 96.8 0.0028 6.2E-08 66.1 6.7 71 128-219 6-77 (204)
129 PRK13728 conjugal transfer pro 96.8 0.0028 6.1E-08 64.8 6.5 70 142-218 73-151 (181)
130 cd04794 euk_LANCL eukaryotic L 96.7 0.11 2.3E-06 58.4 19.5 136 550-728 171-307 (343)
131 cd03017 PRX_BCP Peroxiredoxin 96.7 0.0062 1.3E-07 58.5 8.3 85 137-225 22-132 (140)
132 COG3533 Uncharacterized protei 96.7 0.072 1.6E-06 61.4 17.6 125 547-725 134-262 (589)
133 PLN03009 cellulase 96.7 0.046 1E-06 64.3 16.6 86 547-648 176-265 (495)
134 PF00759 Glyco_hydro_9: Glycos 96.6 0.011 2.4E-07 68.5 11.2 90 545-652 155-247 (444)
135 PRK09437 bcp thioredoxin-depen 96.6 0.0093 2E-07 58.7 9.1 86 137-226 29-143 (154)
136 PTZ00470 glycoside hydrolase f 96.6 0.13 2.9E-06 60.8 20.0 291 371-737 150-466 (522)
137 PLN02340 endoglucanase 96.5 0.04 8.6E-07 66.3 14.7 86 547-650 179-266 (614)
138 cd04792 LanM-like LanM-like pr 96.5 0.91 2E-05 57.0 27.5 138 547-729 646-785 (825)
139 PLN02345 endoglucanase 96.5 0.051 1.1E-06 63.5 15.1 82 547-646 145-228 (469)
140 cd02889 SQCY Squalene cyclase 96.5 0.14 3.1E-06 57.0 18.3 45 380-425 92-138 (348)
141 PTZ00056 glutathione peroxidas 96.4 0.009 2E-07 62.1 8.0 19 137-155 38-56 (199)
142 KOG0191 Thioredoxin/protein di 96.4 0.0051 1.1E-07 70.1 6.7 75 132-217 41-115 (383)
143 COG4403 LcnDR2 Lantibiotic mod 96.4 0.26 5.7E-06 60.3 20.6 224 334-658 595-831 (963)
144 PLN02171 endoglucanase 96.4 0.095 2E-06 63.3 17.1 84 547-650 179-267 (629)
145 KOG2787 Lanthionine synthetase 96.4 0.014 3E-07 63.6 9.0 77 549-655 285-361 (403)
146 PF06917 Pectate_lyase_2: Peri 96.4 1.5 3.2E-05 51.0 25.4 130 579-727 327-473 (557)
147 PLN02266 endoglucanase 96.4 0.2 4.4E-06 59.1 19.3 82 546-649 192-281 (510)
148 KOG4277 Uncharacterized conser 96.3 0.0027 5.9E-08 68.1 3.5 78 126-215 32-112 (468)
149 PLN02308 endoglucanase 96.3 0.16 3.5E-06 59.8 18.2 84 547-648 175-262 (492)
150 cd02988 Phd_like_VIAF Phosduci 96.3 0.0063 1.4E-07 62.9 5.9 66 138-219 102-167 (192)
151 KOG0190 Protein disulfide isom 96.2 0.0055 1.2E-07 71.2 5.5 99 103-217 344-454 (493)
152 KOG0190 Protein disulfide isom 96.2 0.0043 9.3E-08 72.0 4.6 75 128-213 32-109 (493)
153 TIGR02180 GRX_euk Glutaredoxin 96.2 0.0073 1.6E-07 52.7 4.9 66 143-219 2-67 (84)
154 PLN02613 endoglucanase 96.2 0.18 3.9E-06 59.4 17.5 81 545-647 173-256 (498)
155 PF00578 AhpC-TSA: AhpC/TSA fa 96.1 0.012 2.6E-07 55.1 6.3 21 137-157 24-45 (124)
156 PLN02909 Endoglucanase 96.0 0.27 5.8E-06 57.8 18.0 79 547-647 183-264 (486)
157 cd04434 LanC_like LanC-like pr 96.0 1.1 2.4E-05 49.1 22.3 133 549-723 164-298 (343)
158 TIGR02540 gpx7 putative glutat 96.0 0.028 6E-07 55.5 8.4 24 132-155 16-39 (153)
159 PLN02412 probable glutathione 96.0 0.018 3.9E-07 58.0 7.2 19 137-155 28-46 (167)
160 PLN02420 endoglucanase 95.9 0.38 8.3E-06 57.0 18.7 88 547-649 190-277 (525)
161 PTZ00470 glycoside hydrolase f 95.9 0.044 9.6E-07 64.8 10.9 99 622-725 157-256 (522)
162 cd02968 SCO SCO (an acronym fo 95.9 0.022 4.8E-07 54.8 7.1 22 137-158 21-43 (142)
163 TIGR02196 GlrX_YruB Glutaredox 95.9 0.03 6.5E-07 46.9 7.1 61 143-219 3-63 (74)
164 PLN00119 endoglucanase 95.8 0.34 7.4E-06 56.9 17.5 84 547-647 180-264 (489)
165 PF01532 Glyco_hydro_47: Glyco 95.8 0.38 8.3E-06 56.3 18.0 300 335-706 98-432 (452)
166 PF14595 Thioredoxin_9: Thiore 95.7 0.008 1.7E-07 58.3 3.1 82 127-219 29-113 (129)
167 PRK10382 alkyl hydroperoxide r 95.6 0.077 1.7E-06 54.7 10.3 99 137-242 30-153 (187)
168 TIGR03137 AhpC peroxiredoxin. 95.6 0.075 1.6E-06 54.6 10.0 94 137-242 30-153 (187)
169 PF01532 Glyco_hydro_47: Glyco 95.6 0.075 1.6E-06 62.1 11.1 165 544-732 77-252 (452)
170 PF05147 LANC_like: Lanthionin 95.5 0.0084 1.8E-07 66.5 3.1 249 379-725 7-262 (355)
171 KOG2507 Ubiquitin regulatory p 95.5 0.12 2.6E-06 58.3 11.7 111 122-247 2-113 (506)
172 cd00340 GSH_Peroxidase Glutath 95.5 0.023 5.1E-07 56.0 5.6 22 134-156 18-39 (152)
173 cd02976 NrdH NrdH-redoxin (Nrd 95.2 0.062 1.3E-06 45.0 6.7 62 142-219 2-63 (73)
174 cd03014 PRX_Atyp2cys Peroxired 95.2 0.041 8.8E-07 53.3 6.3 94 137-238 25-141 (143)
175 PRK00522 tpx lipid hydroperoxi 95.2 0.067 1.5E-06 53.8 7.9 98 137-242 43-166 (167)
176 cd03419 GRX_GRXh_1_2_like Glut 95.1 0.1 2.2E-06 45.4 7.9 63 143-218 3-65 (82)
177 cd04794 euk_LANCL eukaryotic L 95.1 0.36 7.9E-06 54.1 14.3 78 550-657 230-307 (343)
178 PTZ00256 glutathione peroxidas 95.1 0.068 1.5E-06 54.6 7.7 21 135-155 37-58 (183)
179 COG0526 TrxA Thiol-disulfide i 94.9 0.066 1.4E-06 47.4 6.4 60 138-209 32-95 (127)
180 cd02892 SQCY_1 Squalene cyclas 94.8 6 0.00013 48.4 24.7 60 358-425 359-421 (634)
181 TIGR02200 GlrX_actino Glutared 94.7 0.09 2E-06 44.9 6.5 63 142-219 2-65 (77)
182 PLN02175 endoglucanase 94.7 0.82 1.8E-05 53.8 16.0 86 547-647 172-258 (484)
183 KOG1752 Glutaredoxin and relat 94.6 0.073 1.6E-06 49.8 6.0 67 131-209 7-73 (104)
184 cd04793 LanC LanC is the cycla 94.6 1.4 3E-05 50.1 17.7 83 548-657 248-330 (382)
185 cd02971 PRX_family Peroxiredox 94.3 0.097 2.1E-06 50.1 6.4 22 137-158 21-43 (140)
186 KOG0191 Thioredoxin/protein di 94.2 0.041 8.9E-07 62.7 4.1 71 134-215 158-230 (383)
187 TIGR01577 oligosac_amyl oligos 94.2 4.5 9.8E-05 49.3 21.8 58 543-609 413-470 (616)
188 cd03018 PRX_AhpE_like Peroxire 94.0 0.14 3.1E-06 49.6 6.8 19 137-155 26-46 (149)
189 PRK15000 peroxidase; Provision 93.9 0.16 3.5E-06 52.8 7.4 97 137-242 33-159 (200)
190 TIGR02189 GlrX-like_plant Glut 93.8 0.19 4.2E-06 46.3 7.0 69 135-218 5-73 (99)
191 cd03015 PRX_Typ2cys Peroxiredo 93.8 0.18 3.9E-06 50.8 7.4 80 136-220 27-136 (173)
192 PF06110 DUF953: Eukaryotic pr 93.5 0.1 2.2E-06 49.9 4.7 80 128-215 9-101 (119)
193 PRK13190 putative peroxiredoxi 93.4 0.17 3.8E-06 52.6 6.6 36 203-242 116-151 (202)
194 TIGR02190 GlrX-dom Glutaredoxi 93.2 0.22 4.7E-06 43.7 6.0 67 134-219 4-70 (79)
195 PRK11657 dsbG disulfide isomer 93.0 0.34 7.3E-06 52.3 8.3 28 199-226 215-242 (251)
196 cd02066 GRX_family Glutaredoxi 92.9 0.38 8.3E-06 39.8 6.9 61 143-219 3-63 (72)
197 PRK11200 grxA glutaredoxin 1; 92.9 0.6 1.3E-05 41.4 8.4 66 142-218 3-70 (85)
198 PRK11509 hydrogenase-1 operon 92.8 0.18 3.9E-06 49.2 5.3 51 165-224 60-112 (132)
199 PTZ00253 tryparedoxin peroxida 92.7 0.22 4.9E-06 51.5 6.2 98 137-242 35-161 (199)
200 PF06202 GDE_C: Amylo-alpha-1, 92.7 9.4 0.0002 43.6 19.8 113 316-431 91-225 (370)
201 PRK15317 alkyl hydroperoxide r 92.5 0.44 9.5E-06 56.6 9.1 97 105-219 82-182 (517)
202 PF06917 Pectate_lyase_2: Peri 92.5 0.48 1E-05 54.8 8.8 139 502-667 317-481 (557)
203 PHA03050 glutaredoxin; Provisi 92.4 0.43 9.3E-06 44.9 7.1 70 135-217 10-80 (108)
204 TIGR03143 AhpF_homolog putativ 92.4 0.29 6.3E-06 58.7 7.4 79 127-220 464-543 (555)
205 TIGR00365 monothiol glutaredox 92.3 0.5 1.1E-05 43.4 7.3 72 129-217 3-78 (97)
206 PF00462 Glutaredoxin: Glutare 92.2 0.57 1.2E-05 38.6 6.9 53 143-209 2-55 (60)
207 PTZ00137 2-Cys peroxiredoxin; 92.2 0.91 2E-05 49.3 10.3 98 137-242 97-222 (261)
208 cd02892 SQCY_1 Squalene cyclas 92.1 24 0.00052 43.3 23.5 115 280-421 233-348 (634)
209 COG4833 Predicted glycosyl hyd 92.1 1.5 3.3E-05 47.2 11.4 155 528-706 111-283 (377)
210 cd03027 GRX_DEP Glutaredoxin ( 91.4 0.58 1.2E-05 40.2 6.3 54 143-209 4-57 (73)
211 PRK13599 putative peroxiredoxi 90.9 0.64 1.4E-05 49.0 7.2 37 203-243 118-154 (215)
212 PRK10638 glutaredoxin 3; Provi 90.3 0.87 1.9E-05 40.2 6.5 61 143-219 5-65 (83)
213 cd02970 PRX_like2 Peroxiredoxi 90.2 0.8 1.7E-05 44.1 6.9 70 137-217 22-93 (149)
214 PRK10877 protein disulfide iso 90.2 1 2.2E-05 48.1 8.1 25 135-159 104-128 (232)
215 TIGR01577 oligosac_amyl oligos 90.2 6 0.00013 48.2 15.7 145 546-725 300-455 (616)
216 PF13728 TraF: F plasmid trans 90.0 1.2 2.6E-05 47.0 8.4 80 129-217 113-197 (215)
217 cd03028 GRX_PICOT_like Glutare 89.9 1.5 3.2E-05 39.5 7.8 64 138-217 7-74 (90)
218 KOG0912 Thiol-disulfide isomer 89.8 0.61 1.3E-05 51.0 6.0 64 137-209 12-78 (375)
219 TIGR03140 AhpF alkyl hydropero 89.8 1.2 2.7E-05 52.8 9.3 78 127-219 105-183 (515)
220 KOG3414 Component of the U4/U6 89.6 0.9 2E-05 43.7 6.2 80 112-211 3-85 (142)
221 PRK13191 putative peroxiredoxi 89.4 2.3 5.1E-05 44.8 10.0 37 203-243 123-159 (215)
222 COG4403 LcnDR2 Lantibiotic mod 89.4 8.8 0.00019 47.7 15.8 140 540-729 690-831 (963)
223 TIGR02194 GlrX_NrdH Glutaredox 89.4 0.99 2.1E-05 38.7 6.0 52 144-209 3-54 (72)
224 cd03418 GRX_GRXb_1_3_like Glut 89.3 1.2 2.6E-05 37.9 6.5 60 143-218 3-63 (75)
225 TIGR01507 hopene_cyclase squal 88.9 67 0.0014 39.5 25.0 45 379-425 380-424 (635)
226 TIGR02183 GRXA Glutaredoxin, G 88.9 1.1 2.4E-05 40.0 6.2 66 142-218 2-69 (86)
227 KOG2204 Mannosyl-oligosacchari 88.8 16 0.00035 43.2 16.7 285 381-736 263-571 (625)
228 cd03016 PRX_1cys Peroxiredoxin 88.6 1 2.2E-05 46.9 6.5 35 204-242 117-151 (203)
229 PRK10606 btuE putative glutath 88.4 1.2 2.6E-05 45.8 6.9 77 132-215 19-102 (183)
230 TIGR02181 GRX_bact Glutaredoxi 88.4 0.95 2.1E-05 39.3 5.3 58 144-217 3-60 (79)
231 PLN02993 lupeol synthase 87.6 4.5 9.8E-05 50.2 12.2 83 336-425 513-611 (763)
232 cd02896 complement_C3_C4_C5 Pr 87.6 49 0.0011 36.4 23.7 76 335-424 48-123 (297)
233 KOG2431 1, 2-alpha-mannosidase 87.5 52 0.0011 38.0 19.1 302 371-706 170-521 (546)
234 PRK10329 glutaredoxin-like pro 87.1 1.7 3.7E-05 38.6 6.2 53 143-209 4-56 (81)
235 PF05147 LANC_like: Lanthionin 87.0 2.4 5.2E-05 47.0 8.8 134 547-723 170-306 (355)
236 PF13192 Thioredoxin_3: Thiore 86.8 0.79 1.7E-05 39.9 3.8 58 145-220 5-63 (76)
237 PF02966 DIM1: Mitosis protein 86.5 6.4 0.00014 38.4 10.0 71 135-217 17-87 (133)
238 TIGR01507 hopene_cyclase squal 86.4 30 0.00064 42.6 18.2 116 297-425 362-492 (635)
239 TIGR03463 osq_cycl 2,3-oxidosq 86.3 94 0.002 38.3 26.7 61 357-425 357-421 (634)
240 KOG2431 1, 2-alpha-mannosidase 86.2 4.5 9.7E-05 46.2 10.0 123 584-726 151-276 (546)
241 PF05592 Bac_rhamnosid: Bacter 86.1 14 0.0003 43.7 15.0 116 537-664 197-326 (509)
242 TIGR02474 pec_lyase pectate ly 86.1 0.91 2E-05 49.9 4.6 40 384-424 48-87 (290)
243 cd02889 SQCY Squalene cyclase 85.1 8.7 0.00019 42.7 12.0 142 580-727 43-204 (348)
244 COG0695 GrxC Glutaredoxin and 84.8 2.7 5.8E-05 37.3 6.2 53 143-209 4-59 (80)
245 PRK13189 peroxiredoxin; Provis 84.4 3.2 6.8E-05 44.0 7.7 37 203-243 125-161 (222)
246 PRK11097 endo-1,4-D-glucanase; 84.4 14 0.00031 42.2 13.3 129 586-725 74-213 (376)
247 TIGR01561 gde_arch glycogen de 84.4 23 0.00049 42.9 15.7 113 543-668 347-480 (575)
248 TIGR02739 TraF type-F conjugat 84.2 3.3 7E-05 45.0 7.7 80 129-217 143-227 (256)
249 PLN03012 Camelliol C synthase 83.0 72 0.0016 40.0 19.3 59 359-425 471-534 (759)
250 PRK13703 conjugal pilus assemb 82.9 4.3 9.2E-05 43.9 7.9 81 128-217 135-220 (248)
251 PRK12759 bifunctional gluaredo 81.7 2.3 5E-05 49.2 5.8 63 142-217 4-71 (410)
252 cd03029 GRX_hybridPRX5 Glutare 81.6 4.8 0.0001 34.3 6.4 58 143-217 4-61 (72)
253 KOG2787 Lanthionine synthetase 81.2 1E+02 0.0022 34.7 21.9 112 579-718 241-353 (403)
254 KOG2429 Glycosyl hydrolase, fa 81.1 28 0.0006 41.4 13.9 35 624-658 375-409 (622)
255 PRK10137 alpha-glucosidase; Pr 80.5 1.7E+02 0.0037 36.9 22.2 46 623-668 582-634 (786)
256 TIGR02474 pec_lyase pectate ly 80.0 1E+02 0.0022 34.3 17.2 112 525-658 29-148 (290)
257 KOG0911 Glutaredoxin-related p 79.6 0.8 1.7E-05 48.2 1.0 62 137-210 16-77 (227)
258 PLN02993 lupeol synthase 79.4 93 0.002 39.1 18.6 59 359-425 471-534 (763)
259 PF09492 Pec_lyase: Pectic aci 79.0 2.1 4.7E-05 47.0 4.1 47 377-424 33-82 (289)
260 PF06202 GDE_C: Amylo-alpha-1, 79.0 51 0.0011 37.6 15.4 139 583-727 50-209 (370)
261 cd00688 ISOPREN_C2_like This g 78.6 91 0.002 32.6 20.7 76 337-425 50-125 (300)
262 KOG3425 Uncharacterized conser 78.4 5.2 0.00011 38.4 5.9 53 128-186 12-78 (128)
263 TIGR01787 squalene_cyclas squa 78.1 56 0.0012 40.1 16.2 81 336-425 388-481 (621)
264 TIGR01535 glucan_glucosid gluc 77.5 44 0.00095 41.2 15.0 135 547-722 301-441 (648)
265 PLN03012 Camelliol C synthase 77.0 11 0.00025 46.7 9.9 65 583-649 639-710 (759)
266 PF07678 A2M_comp: A-macroglob 77.0 36 0.00078 36.5 12.7 61 354-424 9-69 (246)
267 KOG1731 FAD-dependent sulfhydr 76.3 1.4 3.1E-05 51.9 1.9 71 139-218 58-131 (606)
268 COG4833 Predicted glycosyl hyd 74.5 5.8 0.00012 43.0 5.6 52 611-664 84-136 (377)
269 KOG2204 Mannosyl-oligosacchari 71.8 6 0.00013 46.7 5.4 95 622-725 264-364 (625)
270 TIGR03463 osq_cycl 2,3-oxidosq 71.5 73 0.0016 39.2 14.9 157 547-726 310-489 (634)
271 TIGR01787 squalene_cyclas squa 70.9 28 0.0006 42.7 11.1 55 357-424 475-529 (621)
272 PLN02266 endoglucanase 70.4 1.2E+02 0.0027 36.2 16.0 125 579-720 130-281 (510)
273 PTZ00062 glutaredoxin; Provisi 69.8 16 0.00034 38.4 7.6 68 130-217 105-179 (204)
274 PRK10824 glutaredoxin-4; Provi 69.3 24 0.00052 33.7 8.0 30 128-158 5-38 (115)
275 PLN02345 endoglucanase 68.6 1.7E+02 0.0037 34.8 16.5 118 579-717 82-228 (469)
276 PF09492 Pec_lyase: Pectic aci 65.8 22 0.00047 39.4 7.9 101 534-656 33-145 (289)
277 PLN02171 endoglucanase 65.0 2.6E+02 0.0056 34.5 17.5 122 579-721 116-267 (629)
278 cd03023 DsbA_Com1_like DsbA fa 65.0 6.2 0.00014 37.8 3.3 23 136-158 3-25 (154)
279 cd02972 DsbA_family DsbA famil 62.0 23 0.00049 30.6 6.1 17 143-159 2-18 (98)
280 cd00688 ISOPREN_C2_like This g 62.0 1.2E+02 0.0027 31.6 12.9 127 282-423 51-179 (300)
281 PLN02308 endoglucanase 61.5 3.2E+02 0.0069 32.7 17.0 121 579-719 112-262 (492)
282 PF00759 Glyco_hydro_9: Glycos 61.0 1.8E+02 0.004 33.7 15.1 126 578-723 93-247 (444)
283 PF01270 Glyco_hydro_8: Glycos 60.9 30 0.00065 39.1 8.2 99 547-662 116-216 (342)
284 KOG2430 Glycosyl hydrolase, fa 60.2 52 0.0011 36.8 9.4 96 541-655 182-283 (587)
285 PF13249 Prenyltrans_2: Prenyl 58.3 36 0.00079 31.0 7.1 22 402-424 91-112 (113)
286 PF02630 SCO1-SenC: SCO1/SenC; 58.2 14 0.0003 37.5 4.5 57 134-193 48-111 (174)
287 cd03060 GST_N_Omega_like GST_N 57.4 40 0.00087 28.3 6.6 59 145-219 4-62 (71)
288 cd02890 PTase Protein prenyltr 57.4 1.4E+02 0.0031 32.4 12.6 122 281-425 45-167 (286)
289 PLN00119 endoglucanase 56.8 4.1E+02 0.009 31.8 16.9 119 579-718 117-264 (489)
290 COG1999 Uncharacterized protei 56.5 19 0.00041 37.8 5.3 56 133-191 62-125 (207)
291 PF03200 Glyco_hydro_63: Manno 56.1 1.2E+02 0.0026 38.4 13.1 54 542-607 560-613 (801)
292 PRK11097 endo-1,4-D-glucanase; 56.0 89 0.0019 36.0 10.9 105 536-656 108-215 (376)
293 PLN02909 Endoglucanase 55.8 4.2E+02 0.0091 31.7 16.7 117 578-718 119-264 (486)
294 PF01204 Trehalase: Trehalase; 53.9 2.4E+02 0.0053 33.8 14.6 94 541-656 305-402 (512)
295 PF13848 Thioredoxin_6: Thiore 52.9 50 0.0011 32.7 7.6 78 128-216 84-164 (184)
296 cd02897 A2M_2 Proteins similar 52.3 52 0.0011 35.9 8.2 77 336-424 46-122 (292)
297 PF04685 DUF608: Protein of un 51.5 54 0.0012 37.5 8.3 38 377-414 96-137 (365)
298 PLN03009 cellulase 50.9 5.1E+02 0.011 31.1 18.3 146 547-719 90-265 (495)
299 COG4545 Glutaredoxin-related p 50.8 33 0.00071 30.4 4.8 65 138-219 2-78 (85)
300 PF05768 DUF836: Glutaredoxin- 50.5 32 0.00069 30.3 5.0 56 142-212 2-58 (81)
301 PLN02613 endoglucanase 50.2 5.2E+02 0.011 31.0 16.8 119 579-719 112-257 (498)
302 COG3408 GDB1 Glycogen debranch 50.0 1.1E+02 0.0023 37.8 11.0 99 579-679 362-482 (641)
303 PF01270 Glyco_hydro_8: Glycos 49.7 1.6E+02 0.0034 33.3 11.7 126 586-727 75-211 (342)
304 PRK13271 treA trehalase; Provi 49.1 2.9E+02 0.0064 33.6 14.2 101 542-666 338-442 (569)
305 PF05592 Bac_rhamnosid: Bacter 47.7 3E+02 0.0066 32.5 14.2 197 504-728 109-319 (509)
306 PRK13270 treF trehalase; Provi 47.6 5.2E+02 0.011 31.4 15.9 126 544-701 350-481 (549)
307 cd03019 DsbA_DsbA DsbA family, 47.0 13 0.00028 36.8 2.3 24 137-160 14-37 (178)
308 TIGR01535 glucan_glucosid gluc 46.8 6.6E+02 0.014 31.2 23.1 156 234-416 209-386 (648)
309 cd02894 GGTase-II Geranylgeran 46.8 4.2E+02 0.0092 28.9 20.1 69 585-668 198-268 (287)
310 cd03051 GST_N_GTT2_like GST_N 46.3 61 0.0013 26.8 6.0 62 144-218 3-64 (74)
311 PLN02175 endoglucanase 45.6 5.6E+02 0.012 30.7 15.6 121 579-718 108-258 (484)
312 cd03020 DsbA_DsbC_DsbG DsbA fa 45.2 19 0.00042 37.0 3.2 33 130-162 69-101 (197)
313 cd03040 GST_N_mPGES2 GST_N fam 44.3 46 0.001 28.3 5.0 60 144-219 4-64 (77)
314 TIGR00162 conserved hypothetic 44.0 3.3E+02 0.0071 28.2 12.0 140 110-267 15-165 (188)
315 PF04685 DUF608: Protein of un 43.9 90 0.0019 35.7 8.6 108 542-666 97-217 (365)
316 PLN02420 endoglucanase 42.2 7E+02 0.015 30.2 17.4 146 547-721 103-278 (525)
317 PF13417 GST_N_3: Glutathione 41.8 1.4E+02 0.0029 25.5 7.5 58 145-219 2-59 (75)
318 cd02896 complement_C3_C4_C5 Pr 41.4 2.2E+02 0.0048 31.3 11.0 116 283-428 170-286 (297)
319 PF06053 DUF929: Domain of unk 40.9 15 0.00032 39.8 1.6 59 136-214 56-116 (249)
320 PF13462 Thioredoxin_4: Thiore 40.6 35 0.00075 33.1 4.1 44 136-181 10-54 (162)
321 TIGR01561 gde_arch glycogen de 40.4 5.3E+02 0.012 31.5 14.7 138 583-727 313-468 (575)
322 PRK10954 periplasmic protein d 38.1 40 0.00088 35.0 4.3 42 138-180 37-79 (207)
323 cd03036 ArsC_like Arsenate Red 37.9 37 0.0008 31.8 3.6 58 144-215 3-61 (111)
324 cd03031 GRX_GRX_like Glutaredo 37.0 75 0.0016 31.7 5.8 30 149-188 15-45 (147)
325 PRK10137 alpha-glucosidase; Pr 35.8 4.9E+02 0.011 33.0 13.6 50 544-605 579-631 (786)
326 PF13243 Prenyltrans_1: Prenyl 35.6 9.5 0.00021 34.9 -0.8 39 385-424 28-66 (109)
327 cd00570 GST_N_family Glutathio 35.2 1.1E+02 0.0024 24.2 5.7 59 144-218 3-61 (71)
328 KOG0366 Protein geranylgeranyl 35.0 6.6E+02 0.014 27.8 15.8 72 586-670 213-284 (329)
329 PF04545 Sigma70_r4: Sigma-70, 34.8 62 0.0013 25.6 4.0 29 499-527 22-50 (50)
330 PF05426 Alginate_lyase: Algin 34.5 6E+02 0.013 27.1 14.5 35 376-410 52-86 (272)
331 cd02977 ArsC_family Arsenate R 32.7 39 0.00084 31.1 2.8 58 144-217 3-63 (105)
332 PRK05778 2-oxoglutarate ferred 32.5 1.8E+02 0.0038 32.5 8.4 55 125-180 180-234 (301)
333 KOG3760 Heparan sulfate-glucur 31.5 3.5E+02 0.0077 31.3 10.3 142 544-719 417-582 (594)
334 PRK01655 spxA transcriptional 30.1 59 0.0013 31.5 3.7 34 143-186 3-37 (131)
335 TIGR02393 RpoD_Cterm RNA polym 29.5 1.1E+02 0.0023 32.6 5.9 29 499-527 198-226 (238)
336 cd02983 P5_C P5 family, C-term 28.9 1.5E+02 0.0033 28.6 6.3 44 164-215 47-93 (130)
337 KOG3760 Heparan sulfate-glucur 28.8 41 0.00088 38.4 2.6 80 580-662 377-462 (594)
338 PF01204 Trehalase: Trehalase; 28.0 92 0.002 37.3 5.6 43 626-668 317-363 (512)
339 TIGR02177 PorB_KorB 2-oxoacid: 27.8 2.5E+02 0.0054 31.2 8.5 99 126-249 164-268 (287)
340 KOG2430 Glycosyl hydrolase, fa 27.3 5.7E+02 0.012 29.0 10.9 143 579-732 135-289 (587)
341 PF03200 Glyco_hydro_63: Manno 27.1 3.2E+02 0.0068 34.8 10.2 48 623-670 565-616 (801)
342 PRK05901 RNA polymerase sigma 25.8 1.2E+02 0.0026 36.4 5.9 47 460-528 452-498 (509)
343 cd03041 GST_N_2GST_N GST_N fam 25.0 2.6E+02 0.0057 23.8 6.6 62 144-219 4-65 (77)
344 PRK13271 treA trehalase; Provi 24.5 1.2E+02 0.0025 37.0 5.5 48 622-669 342-396 (569)
345 PRK13272 treA trehalase; Provi 24.5 1.1E+03 0.025 28.5 13.7 92 544-658 341-436 (542)
346 PF04967 HTH_10: HTH DNA bindi 24.0 1.2E+02 0.0026 25.1 3.9 29 498-526 24-52 (53)
347 KOG2429 Glycosyl hydrolase, fa 23.8 6.5E+02 0.014 30.5 11.1 173 545-732 121-299 (622)
348 COG3408 GDB1 Glycogen debranch 23.6 6.4E+02 0.014 31.3 11.7 139 583-728 303-462 (641)
349 PRK05949 RNA polymerase sigma 23.4 2.1E+02 0.0046 32.2 7.1 46 460-527 271-316 (327)
350 PRK12559 transcriptional regul 23.4 78 0.0017 30.8 3.2 16 142-157 2-17 (131)
351 PF08281 Sigma70_r4_2: Sigma-7 23.3 1.1E+02 0.0023 24.4 3.5 26 500-525 29-54 (54)
352 COG3387 SGA1 Glucoamylase and 23.3 1.5E+03 0.032 28.0 17.0 267 223-654 206-513 (612)
353 PRK07921 RNA polymerase sigma 22.9 2.3E+02 0.005 31.9 7.2 29 499-527 284-312 (324)
354 PRK07405 RNA polymerase sigma 22.8 2.3E+02 0.005 31.7 7.2 29 499-527 278-306 (317)
355 PF07678 A2M_comp: A-macroglob 21.3 2.5E+02 0.0054 30.0 6.9 116 282-428 112-233 (246)
356 TIGR02997 Sig70-cyanoRpoD RNA 21.1 2.1E+02 0.0045 31.6 6.4 51 453-525 243-297 (298)
357 cd03055 GST_N_Omega GST_N fami 21.0 3.2E+02 0.007 24.1 6.5 61 143-219 20-80 (89)
358 PRK07598 RNA polymerase sigma 21.0 2.1E+02 0.0045 33.5 6.5 30 499-528 372-401 (415)
359 TIGR01617 arsC_related transcr 21.0 1.5E+02 0.0033 27.8 4.6 59 144-216 3-62 (117)
360 PF02011 Glyco_hydro_48: Glyco 20.5 1.2E+03 0.027 28.3 12.5 135 360-601 388-529 (619)
361 KOG0365 Beta subunit of farnes 20.2 1E+03 0.022 27.4 11.1 60 357-431 135-198 (423)
362 TIGR00161 conserved hypothetic 20.1 7.9E+02 0.017 26.3 10.3 128 119-267 88-221 (238)
363 TIGR03143 AhpF_homolog putativ 20.1 4.7E+02 0.01 31.5 9.6 90 136-244 363-456 (555)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-171 Score=1454.38 Aligned_cols=661 Identities=45% Similarity=0.769 Sum_probs=619.3
Q ss_pred ccccccccCCChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE
Q 003115 100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (846)
Q Consensus 100 ~~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv 179 (846)
.++|||++|+||||||||+|||+|++|++|||++||+|||||||||||+||||||||++|+|+||+||++||++||+|||
T Consensus 5 ~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV 84 (667)
T COG1331 5 SMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV 84 (667)
T ss_pred CcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 003115 180 DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFA 259 (846)
Q Consensus 180 D~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~ 259 (846)
|||||||||++||+++|+++|+||||++|||||||+||+++||+|+++++|+|||+++|++|.+.|+++|++++++|+++
T Consensus 85 DREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~ 164 (667)
T COG1331 85 DREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERV 164 (667)
T ss_pred ChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHH
Q 003115 260 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK 339 (846)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 339 (846)
.+.++....+. .+..++++.+++++++|.+.||++|||||++||||+|+.+.|||+++.+++ ++++++
T Consensus 165 ~~~l~~~~~~~-----~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~ 232 (667)
T COG1331 165 LEALEGLARPS-----AGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALD 232 (667)
T ss_pred HHHHHhccCCC-----ccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHH
Confidence 99998755221 123556788999999999999999999999999999999999999987754 479999
Q ss_pred HHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003115 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 419 (846)
Q Consensus 340 ~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~ 419 (846)
|+++||++|+.|||||||||||||||||+.|.||||||||||||+|+.+|++||+.|||+.|+++|++|++||+|+|++|
T Consensus 233 ~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp 312 (667)
T COG1331 233 MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSP 312 (667)
T ss_pred HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCC
Q 003115 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 499 (846)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~ 499 (846)
+||||+|+|||++ ++||+||+||.+||+++||+++++|+++|+|+++|| |+|+||||+..+
T Consensus 313 ~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~ 373 (667)
T COG1331 313 EGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGP 373 (667)
T ss_pred CCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCc
Confidence 9999999999994 699999999999999999999999999999999999 689999999988
Q ss_pred chHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003115 500 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 579 (846)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~ 579 (846)
.++ + ++++.+.++.+|+||+.+|.+|++|++||||+|+||||||.||+.|+++++| +
T Consensus 374 ~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~ 430 (667)
T COG1331 374 LEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------P 430 (667)
T ss_pred hhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------h
Confidence 665 1 7888999999999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003115 580 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 580 ~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (846)
+|++.|+++++||.+.+++ +++.|.+++|.....++++|||++|.|+++||++|+|.+||+.|++|++.++++|||+
T Consensus 431 ~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~ 507 (667)
T COG1331 431 EYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDD 507 (667)
T ss_pred HHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 3899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003115 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC 739 (846)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~~~ 739 (846)
+ ||||+++.+++.+++|.++..|+++||+||+++.+|++|+.+||+ ..|.+.|+++|+.|.+.+.++|.++++++.
T Consensus 508 ~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~ 583 (667)
T COG1331 508 E-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLLL 583 (667)
T ss_pred C-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 8 679999999999999999999999999999999999999999996 889999999999999999999999999999
Q ss_pred HHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEc
Q 003115 740 AADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVC 819 (846)
Q Consensus 740 a~~~~~~~~~~~vvivg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ayVC 819 (846)
|++++..+ ..+|||+| ....++++++.+.|+|++++++...+. +.++.+....+|+ ++|||
T Consensus 584 a~~~~~~~-~~~ivvv~----~~~~~~~~~~~~~~~P~~~l~~~~~~~-------------~~~~~~~~l~~g~-~ayvC 644 (667)
T COG1331 584 AAEFLISG-PLVIVVAG----DPRSELLRAALRLYLPEKVLVVGTEGY-------------VSLLVDGMLGGGK-TAYVC 644 (667)
T ss_pred HHHHHcCC-ceEEEEeC----CCcHHHHHHHHhcCCcceEEEEecccc-------------cCcchhhccCCCC-eEEEe
Confidence 99998876 57888888 234679999999999999998765431 1111111112444 99999
Q ss_pred cCCccCCCCCCHHHHHHHhhc
Q 003115 820 QNFSCSPPVTDPISLENLLLE 840 (846)
Q Consensus 820 ~~~~C~~Pvt~~e~L~~~L~~ 840 (846)
+|++|++||+++++|.++|..
T Consensus 645 ~~~~C~~P~~~~e~l~~~l~~ 665 (667)
T COG1331 645 TGDACLPPVTSPEELAELLAV 665 (667)
T ss_pred cCCccCCCcCCHHHHHHHHhh
Confidence 999999999999999999975
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=2.4e-168 Score=1368.46 Aligned_cols=694 Identities=62% Similarity=1.037 Sum_probs=645.4
Q ss_pred ccccccccCCChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE
Q 003115 100 KHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV 179 (846)
Q Consensus 100 ~~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv 179 (846)
+.-|||++++||||+|||.|||+|+||++||+++|++|||||||++||++|||||+||+|+|+|++++++||++||.|||
T Consensus 74 ~~~nRli~skspyllqhaynpvdwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikV 153 (786)
T KOG2244|consen 74 PPLNRLISSKSPYLLQHAYNPVDWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKV 153 (786)
T ss_pred CccccccccCCcchhhhccCCcccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhcc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 003115 180 DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFA 259 (846)
Q Consensus 180 D~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~ 259 (846)
|||||||+|++||.++++..|.||||+.||||||.+|+.+||||||++++|++||..+|++|++.|+++|+.+++.+..+
T Consensus 154 DREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w~~kr~tllet~~~~ 233 (786)
T KOG2244|consen 154 DREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAWNSKRDTLLETGTYA 233 (786)
T ss_pred ChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHHHhhhhHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHH
Q 003115 260 IEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQK 339 (846)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 339 (846)
++.|+++..+.+. .=+.+++++.+.++.++||||.+||||.+..|.||..+... +.+++.+.
T Consensus 234 is~ls~al~peaa-----------~g~~~~ekl~e~i~~~~qGfg~apKFP~~~~L~FLf~~~lt-------~k~~d~~~ 295 (786)
T KOG2244|consen 234 ISELSKALSPEAA-----------TGDNRAEKLSEGISREAQGFGEAPKFPKACDLDFLFTFNLT-------SKADDEKS 295 (786)
T ss_pred HHHHHhhcCcccc-----------ccchhHHHHHHHHHHHhhhhccCCCCCCccccceeeeeccc-------ccCcHHHH
Confidence 8888755442111 01255688889999999999999999999999999887543 23578999
Q ss_pred HHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003115 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 419 (846)
Q Consensus 340 ~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~ 419 (846)
|+.+||+.|+.|||+|||||||||||||+.|+|||||||||||+||+.+|++||++|+|+.|..+|+++++||.++|.+|
T Consensus 296 Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~ 375 (786)
T KOG2244|consen 296 MVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHP 375 (786)
T ss_pred HHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh-------HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcc
Q 003115 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-------AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 492 (846)
Q Consensus 420 ~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~-------~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~n 492 (846)
+||||+++||||.|.++++.++|||||+||.+||+++||+. ++++..+||+++.||+ .+.+||||++.|+|
T Consensus 376 ~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~sGnv--s~ssDPhgel~gkN 453 (786)
T KOG2244|consen 376 EGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLFAEHYGVKKSGNV--SSSSDPHGELAGKN 453 (786)
T ss_pred CCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCCCCCC--CCCCCCcccccCce
Confidence 99999999999999999999999999999999999999965 4999999999999997 47899999999999
Q ss_pred eeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 003115 493 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 572 (846)
Q Consensus 493 vL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~ 572 (846)
||.++.+.++.|..++++++++++.|.+++++|.++|.+||+|++|+|||++||||||++|++|+.+++.+
T Consensus 454 VL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~sWnGLviSgl~kag~~~~a~--------- 524 (786)
T KOG2244|consen 454 VLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIVSWNGLVISGLAKAGKILKAE--------- 524 (786)
T ss_pred EEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchheeeccchhhHHHHHHHHHhhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCCC----------CCCCCcchHHHHHHHHHHHHHHcCCHHH
Q 003115 573 VVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGPS----------KAPGFLDDYAFLISGLLDLYEFGSGTKW 641 (846)
Q Consensus 573 ~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~-~~~dg~~----------~~~~~leDyA~~i~aLl~LYe~Tgd~~y 641 (846)
++|++.|..+++|+.++|+|...+.|.+ +.++|.. ..++|++||||+|.|||+||+++|+.+|
T Consensus 525 ------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~ 598 (786)
T KOG2244|consen 525 ------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEW 598 (786)
T ss_pred ------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHH
Confidence 6999999999999999999987788877 5444421 3357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 642 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 642 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
|++|++|++.+..+||| +||||.+..+++.+++|.|+..|+++||+||+.+.||+||+.+++. +.|++.|.+++.
T Consensus 599 LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~---e~yl~ka~~ll~ 673 (786)
T KOG2244|consen 599 LKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA---ESYLNKAHRLLA 673 (786)
T ss_pred HHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH---HHHHHHHHHHHH
Confidence 99999999999999999 8999999888999999999999999999999999999999999985 899999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCchhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccc
Q 003115 722 VFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNN 801 (846)
Q Consensus 722 ~~~~~i~~~p~~~~~~~~a~~~~~~~~~~~vvivg~~~~~~~~~ll~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~l 801 (846)
.|+.++.+.|.+.|-|++|+... .+..++|||||+++++++.+++.++++.|+|+++||+++|+++ .+++....+..
T Consensus 674 ~fseRl~~vpvAlPeM~~Al~~~-q~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~--ee~s~~~ls~k 750 (786)
T KOG2244|consen 674 VFSERLREVPVALPEMCCALMIS-QPGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDE--EEFSEEHLSNK 750 (786)
T ss_pred HHHHHhhccchhhHHHHHHHHhh-ccCcceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCH--HHHHhccCchH
Confidence 99999999999999999988654 4557999999999999999999999999999999999998664 34566555666
Q ss_pred hhhhcccCCCCccEEEEccCCccCCCCCCHHHHHHHhh
Q 003115 802 ASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLL 839 (846)
Q Consensus 802 ~~l~~~~~~~~~~~ayVC~~~~C~~Pvt~~e~L~~~L~ 839 (846)
..|.+ .++++++|||++++|++||+|+.+|+++|.
T Consensus 751 a~m~~---~g~k~tayvC~~~aC~~PVtdpqeLe~l~s 785 (786)
T KOG2244|consen 751 AEMAK---NGEKVTAYVCQHFACSPPVTDPQELERLLS 785 (786)
T ss_pred HHHHh---cCCCceEEEecCcccCCCCCCHHHHHHHhc
Confidence 55553 478999999999999999999999999875
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=2e-55 Score=432.70 Aligned_cols=163 Identities=61% Similarity=1.166 Sum_probs=134.4
Q ss_pred ccccccCCChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC
Q 003115 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (846)
Q Consensus 102 ~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ 181 (846)
+|||+.|+|||||||+++||+|++|++||+++||+|||||||+||++||||||+|+++||+||+|+++||++||+||||+
T Consensus 1 ~N~l~~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr 80 (163)
T PF03190_consen 1 TNRLANSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR 80 (163)
T ss_dssp --GGGG---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET
T ss_pred CCccccCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 003115 182 EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIE 261 (846)
Q Consensus 182 ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~~ 261 (846)
||+||+++.||.++|+++|.||||++||+||||+||+++||+||++..|+++|+++|++|++.|+++|++|.+.|++|.+
T Consensus 81 ee~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~ 160 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILE 160 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-S
T ss_pred ccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH
Q 003115 262 QLS 264 (846)
Q Consensus 262 ~l~ 264 (846)
+|+
T Consensus 161 ~l~ 163 (163)
T PF03190_consen 161 ALQ 163 (163)
T ss_dssp HH-
T ss_pred hhC
Confidence 764
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.97 E-value=3.3e-31 Score=252.78 Aligned_cols=123 Identities=73% Similarity=1.394 Sum_probs=119.3
Q ss_pred ccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 124 ~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
++|+++|+++|+++||||||+|+++||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|++..+.+.|++|
T Consensus 1 ~~~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 1 YPWGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CCCCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH
Q 003115 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (846)
+|++||++|+|+++++++|+|+++.++.+||.++|++|.+.|.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELWR 123 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999997
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.92 E-value=2.6e-23 Score=233.33 Aligned_cols=301 Identities=16% Similarity=0.145 Sum_probs=227.3
Q ss_pred CCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccC
Q 003115 351 GGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDA 429 (846)
Q Consensus 351 GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DA 429 (846)
.-.+|+..|||+- ++|.++.+..-.|-+|.||++|++|+.+|++++++.|++.|+++++||.+++++++ ||||.+.|.
T Consensus 25 ~~~~d~~~gg~~~-~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~ 103 (384)
T cd00249 25 EAGLDREAGGFFE-CLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQ 103 (384)
T ss_pred hcCCCCCCCCeEE-EECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcC
Confidence 3358888999985 88889987667999999999999999999999999999999999999999999998 999999998
Q ss_pred CCccccccccccCCceEEecHHHHHHHhhhh--HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHc
Q 003115 430 DSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKL 507 (846)
Q Consensus 430 Ds~~~~~~~~~~EGayY~wt~~Ei~~~L~~~--~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~ 507 (846)
|+.+.+..+..++.+|.++...++.+++++. .+.+.+.
T Consensus 104 ~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~---------------------------------------- 143 (384)
T cd00249 104 DGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEET---------------------------------------- 143 (384)
T ss_pred CCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------------
Confidence 8877666666778888888888888887632 1222221
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCCC--CCCCchhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHH
Q 003115 508 GMPLEKYLNILGECRRKLFDVRSKRPR--PHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYME 583 (846)
Q Consensus 508 g~~~~~l~~~l~~~r~~L~~~R~~R~~--P~~DdKilt~WNglm--I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe 583 (846)
++.+.++++ ....... ...|+..+-+.|..| +.+|.+++.++++ ++|++
T Consensus 144 ----------~~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd----------------~~~~~ 196 (384)
T cd00249 144 ----------IDLLERRFW-EDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGE----------------QKYLD 196 (384)
T ss_pred ----------HHHHHHHhc-cCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCC----------------HHHHH
Confidence 111222221 0000000 000111122245555 8899999999998 78999
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCC------CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 584 VAESAASFIRRHLYDEQTHRLQHSFRNGPS------KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 584 ~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~------~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
.|+++.+.+.++++++.+|+++..+.++.. .....+.-.+..+.+++++++++++++|++.|+++++.+.++++
T Consensus 197 ~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~ 276 (384)
T cd00249 197 RADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGW 276 (384)
T ss_pred HHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCc
Confidence 999999999999998878888876644311 11111223566788999999999999999999999999999999
Q ss_pred ccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 658 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 658 D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
|+++|++|.+..++... ...|+..+++++.++.+++.|+.+||+ +.|.+.++++++.+....
T Consensus 277 d~~~G~~~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 277 DPERGGLYYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred CccCCCEEEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhc
Confidence 99988888833222221 245789999999999999999999986 789999988888765443
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.87 E-value=1.3e-19 Score=203.37 Aligned_cols=331 Identities=15% Similarity=0.058 Sum_probs=223.1
Q ss_pred HHHHHHHHHh-hccccCCCCCC------CC----CCCChh--HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhC
Q 003115 285 LRLCAEQLSK-SYDSRFGGFGS------AP----KFPRPV--EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKG 351 (846)
Q Consensus 285 ~~~~~~~l~~-~~D~~~GGfg~------ap----KFP~~~--~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~G 351 (846)
++.++..+.+ .+|+++|||.. .| |.-... .+..+...+... ++++.+++|.++++-|..
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~-------~~~~~l~~A~~~~~fl~~- 87 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG-------WRPEWLEAAEHGLEYLDR- 87 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHH-
Confidence 4566666766 58999999954 12 332111 112222222222 256889999999998877
Q ss_pred CCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCC
Q 003115 352 GIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 431 (846)
Q Consensus 352 Gi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs 431 (846)
-.+|...|||++ ++|++|.+.+..|.|||+|.++.+|+.+|++++++.|++.|+++++++.++++++.||+|...+.|.
T Consensus 88 ~~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~ 166 (384)
T cd00249 88 HGRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT 166 (384)
T ss_pred hCcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 466766799986 8898999888899999999999999999999999999999999999999999854577775544432
Q ss_pred ccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCH
Q 003115 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (846)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~ 511 (846)
.+ .++. -... .....+.+.+.++.+.. ..
T Consensus 167 ~~-------~~~~---~~~~-------h~~~all~l~~~tgd~~----------------------------------~~ 195 (384)
T cd00249 167 PP-------YRGS---NPHM-------HLLEAMLAAYEATGEQK----------------------------------YL 195 (384)
T ss_pred CC-------CCCC---ChhH-------HHHHHHHHHHHHhCCHH----------------------------------HH
Confidence 11 1110 0000 00111111222211000 01
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCC-----------CchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 003115 512 EKYLNILGECRRKLFDVRSKRPRPHL-----------DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 580 (846)
Q Consensus 512 ~~l~~~l~~~r~~L~~~R~~R~~P~~-----------DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~ 580 (846)
+..++.++.+.+++.+....+..-+. .+-+.-+-|.-++++|.++++++++ ++
T Consensus 196 ~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~----------------~~ 259 (384)
T cd00249 196 DRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQ----------------AW 259 (384)
T ss_pred HHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCC----------------HH
Confidence 33344555555555543322221111 1112233467788999999999987 78
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEe-c-CC-CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 581 YMEVAESAASFIRRHLYDEQTHRLQHSF-R-NG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 581 yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~-dg-~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
|++.|+++.+++.++++|+++|+++.+. . +| .....+.++.++.++.+++.+|++|||++|++++.++++.+.++|+
T Consensus 260 ~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 260 LIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred HHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999888888843 2 23 2234678889999999999999999999999999999999999999
Q ss_pred ccCCCcccccCCCCCcccccccCCCCCCCCChHHHH
Q 003115 658 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 693 (846)
Q Consensus 658 D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~ 693 (846)
|++.|+||+.-+.++.+....| .-...+.++..+
T Consensus 340 d~~~G~w~~~~~~~g~~~~~~~--~~~~~~yH~~~a 373 (384)
T cd00249 340 DPEYGLWFGYLDADGKVLLTPK--GPAKTFYHVVRA 373 (384)
T ss_pred CCCCCcceeeECCCCCCcCCCC--CCCCCCccHHhH
Confidence 9999999987665555443333 223334444443
No 7
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.81 E-value=6e-20 Score=175.90 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc-cHHHHHHHHHHH
Q 003115 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQA 197 (846)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p-~~~~~y~~~~~~ 197 (846)
+.|+|.+.+++|++.||++||||||+||++||++|++|++++|+|++|++++|++||.|++|.|... ... .
T Consensus 4 ~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~------- 75 (130)
T cd02960 4 DDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-P------- 75 (130)
T ss_pred ccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-c-------
Confidence 3699997779999999999999999999999999999999999999999999999999999876331 111 0
Q ss_pred hcCCCCCCcEEEECCCCceec
Q 003115 198 LYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~ 218 (846)
.| .|+|+++|+||+|+++.
T Consensus 76 -~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 76 -DG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred -cC-cccCeEEEECCCCCCcc
Confidence 13 58999999999998875
No 8
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.77 E-value=4.8e-19 Score=156.86 Aligned_cols=82 Identities=35% Similarity=0.577 Sum_probs=71.9
Q ss_pred cCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003115 122 DWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (846)
Q Consensus 122 ~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~ 201 (846)
+|++++++|+++|+++||||||.||++||+||+.|++++|++++|.++++++||+|+||.++.....+.. +
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~--------~- 71 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD--------R- 71 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH--------H-
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC--------C-
Confidence 5999999999999999999999999999999999999999999999999999999999997543322222 1
Q ss_pred CCCCcEEEECC
Q 003115 202 GGWPLSVFLSP 212 (846)
Q Consensus 202 ~G~P~~v~l~p 212 (846)
.|+|+++|+||
T Consensus 72 ~~~P~~~~ldp 82 (82)
T PF13899_consen 72 QGYPTFFFLDP 82 (82)
T ss_dssp CSSSEEEEEET
T ss_pred ccCCEEEEeCC
Confidence 46999999997
No 9
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.75 E-value=1.1e-18 Score=194.17 Aligned_cols=295 Identities=19% Similarity=0.183 Sum_probs=192.6
Q ss_pred cEEEEEcCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCCcccccc
Q 003115 360 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 437 (846)
Q Consensus 360 GF~RYsvD~~W~v-PHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DADs~~~~~~ 437 (846)
|||. +.|.++.+ +-..|.+..||+++++|+.||+ ++++.|+++|+++++||.+++++++ ||||+++|.+. +.+..
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~~~ 77 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLDPQ 77 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCccc
Confidence 6776 48888875 5556699999999999999999 8999999999999999999999887 99999998777 77788
Q ss_pred ccccCCceEEecHHHHHHHhhhh--HHHHHHHhcc-------c-CCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHc
Q 003115 438 TRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYL-------K-PTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKL 507 (846)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~L~~~--~~~~~~~f~i-------~-~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~ 507 (846)
+..+..+|.++..++ ..+.+++ .+.+.+.+.+ . .+|..+. ...++......+.++|+.+.. ...+
T Consensus 78 ~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~-~~~~~~~~r~~n~~mhl~eA~---l~l~ 152 (346)
T PF07221_consen 78 KDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRES-FDPDWSPPRGQNPHMHLLEAF---LALY 152 (346)
T ss_dssp EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--E-ETTTSSCBEEHHHHHHHHHHH---HHHH
T ss_pred cchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceec-cCCccccCCCCChhHHHHHHH---HHHH
Confidence 889999999999999 5666632 3444444433 2 2232111 111111000012234444322 2222
Q ss_pred CCCH-HHHH----HHHHHHHHHHHhhhcCCCCCCCCc--hhh---------------hchHHHHHHHHHHHHHHhhhhhh
Q 003115 508 GMPL-EKYL----NILGECRRKLFDVRSKRPRPHLDD--KVI---------------VSWNGLVISSFARASKILKSEAE 565 (846)
Q Consensus 508 g~~~-~~l~----~~l~~~r~~L~~~R~~R~~P~~Dd--Kil---------------t~WNglmI~ALa~A~~v~~d~~~ 565 (846)
.++. +... ++++.+.+++.+....+.+-++|+ +.+ -.-+.=.+|.|.++....+..
T Consensus 153 ~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-- 230 (346)
T PF07221_consen 153 EATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-- 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccc--
Confidence 2222 2233 333444444444333333333333 111 122222367777877433331
Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003115 566 SAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (846)
Q Consensus 566 ~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~-~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~ 643 (846)
.+++++.|.+++++..++-||+++|+++.. ..+|.+ ...+.++.++.++.|++.+|++||++.|++
T Consensus 231 ------------~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~ 298 (346)
T PF07221_consen 231 ------------DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLD 298 (346)
T ss_dssp -------------HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHH
Confidence 278999999999999999999988877766 356655 456889999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCcccccCCCCCcccc
Q 003115 644 WAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 676 (846)
Q Consensus 644 ~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~ 676 (846)
.+.++.+.+.++|.|++.|+||..-..++.+..
T Consensus 299 ~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~~ 331 (346)
T PF07221_consen 299 WARRVWDYIFRHFIDPEYGEWFDYLDRDGSPLE 331 (346)
T ss_dssp HHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BSC
T ss_pred HHHHHHHHHHHhCCCCCCCeeEeeECCCCCCCC
Confidence 999999999999999999999987766655433
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.71 E-value=3e-17 Score=154.19 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=88.5
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.+++|+++||+++|||||+|+++||++|+.|++++|+|++|.++||++||.+++|.++ |+..+ +... .+..++|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~-~~~~----~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQR-FLQS----YKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHH-HHHH----hCccCCC
Confidence 3589999999999999999999999999999999999999999999999999999985 45332 2221 2678999
Q ss_pred cEEEECC-CCceecc-ccccCCCCCCCcccHHHHHHHHH
Q 003115 206 LSVFLSP-DLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 206 ~~v~l~p-dg~~~~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
+.+|++| +|+++.. .+|.+++ .|++.|+.+.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~------~f~~~L~~~~ 111 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPE------DLLSQLIEFL 111 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHH------HHHHHHHHHH
Confidence 9999999 8999875 4677766 5777776654
No 11
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.70 E-value=4.7e-17 Score=154.18 Aligned_cols=112 Identities=21% Similarity=0.371 Sum_probs=85.9
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHh
Q 003115 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (846)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~ 198 (846)
+.|.|++| ++|+++|++++|||||+|+++||+||+.|+....+.+++.+ ++.+||.|.||.++.+ ..+.|
T Consensus 1 ~~i~w~~~-~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~------- 70 (117)
T cd02959 1 DHIHWVTL-EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEF------- 70 (117)
T ss_pred CcccceeH-HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhc-------
Confidence 46999987 99999999999999999999999999999998888788766 6779999999876443 33344
Q ss_pred cCC--CCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 199 YGG--GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 199 ~g~--~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
+. +++|+++|++|+|+++...+ ..-+.+...+|.+.|+.|.+
T Consensus 71 -~~~g~~vPt~~f~~~~Gk~~~~~~--~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 -SPDGGYIPRILFLDPSGDVHPEII--NKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -ccCCCccceEEEECCCCCCchhhc--cCCCCccccccCCCHHHHHh
Confidence 33 34999999999999875311 11122234578888877754
No 12
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.3e-14 Score=159.60 Aligned_cols=308 Identities=17% Similarity=0.113 Sum_probs=234.3
Q ss_pred HHhCCCcccCCCcEEEEEcCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 003115 348 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (846)
Q Consensus 348 m~~GGi~D~vgGGF~RYsvD~~W~vPH-FEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa 426 (846)
|-..--.|..+||||. ..|.+-.+-. -.|-+..+++++++|+.|+....++.++++|.+.+.|+.+..++++||+|.+
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 4555567888999998 4444544433 6678888999999999999999888899999999999999999999999999
Q ss_pred ccCCCccccccccccCCceEEecHHHHHHHhhhhHH-HHHHHhcc-------cCCCCcCCCCCCCCCCCCCCcceeeccC
Q 003115 427 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAI-LFKEHYYL-------KPTGNCDLSRMSDPHNEFKGKNVLIELN 498 (846)
Q Consensus 427 ~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~-~~~~~f~i-------~~~Gn~e~~~~~d~~g~feg~nvL~~~~ 498 (846)
+|.|..+.+..++.+-.+|-+...+.+..+.+++++ +..+.+.+ .+.+-.-...+.+|......+.++|+.+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 999999999999999999999999998888875432 22222222 1111100011233333445677888876
Q ss_pred CchHHHHHcCC--CHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH---------------HHHHHHHHHHhh
Q 003115 499 DSSASASKLGM--PLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV---------------ISSFARASKILK 561 (846)
Q Consensus 499 ~~~~~a~~~g~--~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglm---------------I~ALa~A~~v~~ 561 (846)
..-...+..|- ..+.+.++.+.++.+..+.++-+.+-++|.. ||.-- .+.|..-++..+
T Consensus 182 A~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 182 AMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 53221122221 1244556677778899999998888888887 75432 346666666666
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcchHHHHHHHHHHHHHHcC-C
Q 003115 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFGS-G 638 (846)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~-~~~~~leDyA~~i~aLl~LYe~Tg-d 638 (846)
+ ...+..|+++.+-.+.+-||++.|+++-++ .||.+ +..+.+++++..+.+++.|++.|| +
T Consensus 258 ~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~ 321 (388)
T COG2942 258 R----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGAR 321 (388)
T ss_pred h----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCch
Confidence 5 678999999999999999999999988874 56665 446889999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccc
Q 003115 639 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 676 (846)
Q Consensus 639 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~ 676 (846)
+.|.+...++++.+..+|.|++.|.||+.-..+...+.
T Consensus 322 ~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~~ 359 (388)
T COG2942 322 ERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVLL 359 (388)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCceec
Confidence 99999999999999999999999999987665554443
No 13
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.60 E-value=2.8e-15 Score=142.66 Aligned_cols=109 Identities=23% Similarity=0.419 Sum_probs=84.9
Q ss_pred hHHHHHHHHhcC-CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHH------HHHHHHhc
Q 003115 127 GEEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY------MTYVQALY 199 (846)
Q Consensus 127 ~~eAl~~Ak~e~-KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y------~~~~~~~~ 199 (846)
+.+++++|++++ |||+|.|+++||++|++|+.++++++++.+.++++|+.++||+++.+.+.. | ...+....
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~l~~~~ 80 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTD-FDGEALSEKELARKY 80 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeec-cCCCCccHHHHHHHc
Confidence 468999999999 999999999999999999999999999999998899999999986532110 0 00111123
Q ss_pred CCCCCCcEEEECCC-Cceecc-ccccCCCCCCCcccHHHHHHHHH
Q 003115 200 GGGGWPLSVFLSPD-LKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 200 g~~G~P~~v~l~pd-g~~~~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
++.++|+++|++++ |+++.. .+|.+++ .|.++|+.+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 78899999999999 888764 3565543 6778777764
No 14
>smart00594 UAS UAS domain.
Probab=99.54 E-value=2.6e-14 Score=136.31 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=76.6
Q ss_pred CccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc
Q 003115 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY 199 (846)
Q Consensus 120 ~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~ 199 (846)
|.-+...+++|+++|++++|++||+|+++||.+|++|++++|.|++|.+++|++||.+++|.+.... . .++. ..
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~-~l~~----~~ 82 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-Q-RVSQ----FY 82 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-H-HHHH----hc
Confidence 5566667899999999999999999999999999999999999999999999999999999985432 1 1211 13
Q ss_pred CCCCCCcEEEECCCC
Q 003115 200 GGGGWPLSVFLSPDL 214 (846)
Q Consensus 200 g~~G~P~~v~l~pdg 214 (846)
+..|+|+.+|++|+|
T Consensus 83 ~~~~~P~~~~l~~~~ 97 (122)
T smart00594 83 KLDSFPYVAIVDPRT 97 (122)
T ss_pred CcCCCCEEEEEecCC
Confidence 678999999999997
No 15
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=2.8e-14 Score=131.39 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++++++|.++||||+|.|+++||++|+.|....++++++++.++++++.++||++++++....+.+ . .+..++|++
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~-~~i~~~Pti 76 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLK---R-FGVFGPPTY 76 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHH---H-cCCCCCCEE
Confidence 367899999999999999999999999999988899999999988999999999875443332322 1 278899999
Q ss_pred EEECC-CCceecc-ccccCCC
Q 003115 208 VFLSP-DLKPLMG-GTYFPPE 226 (846)
Q Consensus 208 v~l~p-dg~~~~~-~tY~p~~ 226 (846)
+|+++ +|+++.. .+|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~ 97 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTAD 97 (104)
T ss_pred EEECCCCCCCCcccccccCHH
Confidence 99999 8887654 4566643
No 16
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.49 E-value=2.4e-12 Score=145.12 Aligned_cols=289 Identities=19% Similarity=0.254 Sum_probs=180.8
Q ss_pred HHHHHHHHhhcccc-CCCCCC---CC--CCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC
Q 003115 286 RLCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (846)
Q Consensus 286 ~~~~~~l~~~~D~~-~GGfg~---ap--KFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgG 359 (846)
..++..+.+.|+.. .|++.+ .| ..|....+..|..++.+++ ++...+++..++..+.... +|.
T Consensus 7 ~~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~--- 75 (370)
T PF03663_consen 7 KSAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS--- 75 (370)
T ss_dssp -HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS---
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc---
Confidence 34456666788887 454422 12 3556677888888887754 3688899999999887644 110
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeeeccCCC
Q 003115 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDADS 431 (846)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~-----~y~~~A~~t~~fl~r~m~~~~---Ggfysa~DADs 431 (846)
|.. . .| ....-.-|||.+..++.+||++++++ .|++.|+++.+++.+ -+++. ||++|..+.-.
T Consensus 76 -~~~---~-~~---~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~ 146 (370)
T PF03663_consen 76 -YNP---S-NG---SGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTN 146 (370)
T ss_dssp -S-----S----------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----
T ss_pred -ccc---c-cc---cccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccC
Confidence 111 0 00 01122335999999999999999999 999999999999995 45543 88988632100
Q ss_pred ccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCH
Q 003115 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (846)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~ 511 (846)
.+ ...||
T Consensus 147 -----------------------------------------~~-------------~~~Kn------------------- 153 (370)
T PF03663_consen 147 -----------------------------------------SG-------------YDYKN------------------- 153 (370)
T ss_dssp -----------------------------------------TE-------------EEEEE-------------------
T ss_pred -----------------------------------------CC-------------CCccc-------------------
Confidence 00 01111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 003115 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 591 (846)
Q Consensus 512 ~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~ 591 (846)
+--|++++.+.++.|+++++ +.|++.|+++.+|
T Consensus 154 -------------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W 186 (370)
T PF03663_consen 154 -------------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDW 186 (370)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred -------------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHH
Confidence 12489999999999999987 6899999999999
Q ss_pred HHH-hccccCCCeEEEEec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHccccCCCccc
Q 003115 592 IRR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYF 665 (846)
Q Consensus 592 l~~-~l~d~~~G~l~~~~~-dg---~~~~~~~leDyA~~i~aLl~LYe~Tgd~-~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (846)
+.+ .|.|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|++.+..+|+++.+|-++
T Consensus 187 ~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~ 266 (370)
T PF03663_consen 187 MRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILT 266 (370)
T ss_dssp HHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE-
T ss_pred hhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeee
Confidence 999 999988787776542 22 2345678899999999999999999887 99999999999999998876555455
Q ss_pred ccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003115 666 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (846)
Q Consensus 666 ~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~ 722 (846)
+..-+. ....++-.+.-.+++++.|..|+.+... ..+.|.+..+.-.+.
T Consensus 267 e~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~-~~~~~~~~l~~~a~~ 315 (370)
T PF03663_consen 267 EEACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPD-TADTYRDFLRKNADA 315 (370)
T ss_dssp ----------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHH
T ss_pred cccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHH
Confidence 431110 1123445678889999999999999852 124444444433333
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-12 Score=148.68 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=129.0
Q ss_pred hhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHH
Q 003115 377 KMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVED 455 (846)
Q Consensus 377 KMLyD-NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~ 455 (846)
|+|.| |++||.+++.|+++++++.|.++|+++.+|+.++|+.. .+.+.-
T Consensus 407 kvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~---------------------------- 456 (667)
T COG1331 407 KVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY---------------------------- 456 (667)
T ss_pred ceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee----------------------------
Confidence 78888 99999999999999999999999999999999999863 443310
Q ss_pred HhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCC
Q 003115 456 ILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRP 535 (846)
Q Consensus 456 ~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P 535 (846)
++|.. -..+
T Consensus 457 --------------------------------~~G~a---------------------------------------~~~g 465 (667)
T COG1331 457 --------------------------------RGGEA---------------------------------------AVAG 465 (667)
T ss_pred --------------------------------ecCcc---------------------------------------cccc
Confidence 11110 0234
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC---
Q 003115 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--- 612 (846)
Q Consensus 536 ~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~--- 612 (846)
.++|+ +++|.||..+|++++| .+||+.|+++++-+.++|||++ ||||.+..+++
T Consensus 466 ~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ 522 (667)
T COG1331 466 LLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLL 522 (667)
T ss_pred cchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccc
Confidence 56788 9999999999999988 7899999999999999999987 66887644432
Q ss_pred -----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003115 613 -----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 613 -----~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
....+..++||.++.+|+.|..+||+.+|++.|.++++.+-.+.
T Consensus 523 ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 523 IRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 23458889999999999999999999999999999998765443
No 18
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.42 E-value=4.4e-13 Score=149.31 Aligned_cols=163 Identities=26% Similarity=0.314 Sum_probs=133.1
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC
Q 003115 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 613 (846)
Q Consensus 534 ~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~ 613 (846)
.|..+++.-+-.++.+|+.++.|++ +|+ ++|++.|++.++||.++++|+++|+++++.++|.+
T Consensus 11 ~~~~~~~k~~~~q~R~~~~fa~a~~-~g~----------------~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~ 73 (346)
T PF07221_consen 11 KPDDSDKKRLWVQARQLYTFARAYR-LGR----------------PEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP 73 (346)
T ss_dssp -BECGGEEEHHHHHHHHHHHHHHHH-TTS----------------HHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE
T ss_pred CCCCCCCceeeeeHHHHHHHHHHHh-cCc----------------hhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC
Confidence 3555666677789999999999999 886 78999999999999999999988999888766553
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHH-
Q 003115 614 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS- 691 (846)
Q Consensus 614 -~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns- 691 (846)
.....+.|+||++.|+.. +.+||++++++.|+++.+.+.++|+|++.|+|+.....+...+ ++.|+
T Consensus 74 ~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~-----------r~~n~~ 141 (346)
T PF07221_consen 74 LDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP-----------RGQNPH 141 (346)
T ss_dssp EE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB-----------EEHHHH
T ss_pred CccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC-----------CCCChh
Confidence 345677899999999999 8999999999999999999999999998888887654332221 35666
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003115 692 -VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 692 -v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 728 (846)
+++++++.|+.++++ +.|+++|+++++.+...+.
T Consensus 142 mhl~eA~l~l~~~~~~---~~~~~~a~~l~~~~~~~f~ 176 (346)
T PF07221_consen 142 MHLLEAFLALYEATGD---PRYLDRAEELLDLFLDRFA 176 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHH
Confidence 678999999999995 8899999999999875553
No 19
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.41 E-value=5.8e-13 Score=157.65 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=88.6
Q ss_pred CCccCccch-----HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH
Q 003115 119 NPVDWFAWG-----EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (846)
Q Consensus 119 ~~v~W~~~~-----~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~ 193 (846)
+.+.|+++. ++++++|+++||||+|+|+++||++|++|++.+|+|++|++.++ +|+.+++|.+++.+-.+.+++
T Consensus 450 ~~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 450 AHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred cCCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH
Confidence 456777653 78999999999999999999999999999999999999999996 799999999865432232322
Q ss_pred HHHHhcCCCCCCcEEEECCCCceec---cccccCCCCCCCcccHHHHHHHH
Q 003115 194 YVQALYGGGGWPLSVFLSPDLKPLM---GGTYFPPEDKYGRPGFKTILRKV 241 (846)
Q Consensus 194 ~~~~~~g~~G~P~~v~l~pdg~~~~---~~tY~p~~~~~~~~~f~~~L~~i 241 (846)
. .++.|+|+++|++++|+++. ..+|.+++ .|.+.|+++
T Consensus 529 ---~-~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~------~f~~~L~~~ 569 (571)
T PRK00293 529 ---H-YNVLGLPTILFFDAQGQEIPDARVTGFMDAA------AFAAHLRQL 569 (571)
T ss_pred ---H-cCCCCCCEEEEECCCCCCcccccccCCCCHH------HHHHHHHHh
Confidence 1 38889999999999999853 23455544 577777765
No 20
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.35 E-value=1.8e-12 Score=148.97 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=80.6
Q ss_pred ccCccchHH-HHHHHHhcCC--CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003115 121 VDWFAWGEE-AFAEARKRDV--PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (846)
Q Consensus 121 v~W~~~~~e-Al~~Ak~e~K--pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~ 197 (846)
..|+++..+ .++++.+||| |||||||||||..||+||+.+|+|++|+..+ +++|.+|+|++++-..+...++.
T Consensus 454 ~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~--- 529 (569)
T COG4232 454 EFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKR--- 529 (569)
T ss_pred hhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHH---
Confidence 567998877 8899988888 9999999999999999999999999999988 49999999999764444444332
Q ss_pred hcCCCCCCcEEEECCCCceeccc
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
.|+.|.|+++|++++|++....
T Consensus 530 -~~~~G~P~~~ff~~~g~e~~~l 551 (569)
T COG4232 530 -LGVFGVPTYLFFGPQGSEPEIL 551 (569)
T ss_pred -cCCCCCCEEEEECCCCCcCcCC
Confidence 3788999999999999876653
No 21
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.26 E-value=1.3e-12 Score=121.42 Aligned_cols=98 Identities=32% Similarity=0.477 Sum_probs=71.5
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHH-------------HHHHHHHHhcC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYG 200 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~-------------~y~~~~~~~~g 200 (846)
||+++||++|.|+.+||++|+.|++++++++++...++++|..|.++.++..+... .-.+..+. .|
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQR-YG 79 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHH-TT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHH-cC
Confidence 68899999999999999999999999999999999998889999999875332111 11122333 48
Q ss_pred CCCCCcEEEECCCCceecc-ccccCCCCCCCcccHHHHH
Q 003115 201 GGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTIL 238 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~-~tY~p~~~~~~~~~f~~~L 238 (846)
+.|+|+++|+|++|+++.. .||.+++ .|.++|
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HH------HHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHH------HHHhhC
Confidence 9999999999999998864 4677765 465554
No 22
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.19 E-value=6.2e-11 Score=112.32 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=78.1
Q ss_pred hHHHHHHHHhcCCCEEEEEecc----CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 127 GEEAFAEARKRDVPIFLSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~----wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
++||++.||+++|+++|+++++ ||.+| +++|.||+|.++||++||.+..|++.. +. + +..+. .+..
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~-eg---~-~la~~-l~~~ 75 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP-EG---Y-RVSQA-LRER 75 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh-HH---H-HHHHH-hCCC
Confidence 5899999999999999999999 66666 789999999999999999999999854 32 1 12222 2677
Q ss_pred CCCcEEEECCCC---ceecc-ccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDL---KPLMG-GTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg---~~~~~-~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
++|+.+|+.|.. +++.. -||.+++ .|+..|+.+.+
T Consensus 76 ~~P~~~~l~~~~~~~~vv~~i~G~~~~~------~ll~~L~~~~~ 114 (116)
T cd02991 76 TYPFLAMIMLKDNRMTIVGRLEGLIQPE------DLINRLTFIMD 114 (116)
T ss_pred CCCEEEEEEecCCceEEEEEEeCCCCHH------HHHHHHHHHHh
Confidence 999999996543 34433 3677776 57777776653
No 23
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3e-10 Score=110.15 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-CccH--------HHHHHHHHHHh
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDV--------DKVYMTYVQAL 198 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-~p~~--------~~~y~~~~~~~ 198 (846)
-++.+.|..++|-+||.|+...|.+|..|.+++|+++++++++..||+.+.++.+. .|-+ .-.+.+.+|.+
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999999999753 2321 11122334433
Q ss_pred cCCCCCCcEEEECCCCceecc-ccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHH
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~ 260 (846)
++.++|++||.|.+|+-|.. -||+||+ .|+.+|+-+++-+.++-......-.++.
T Consensus 112 -~vrstPtfvFfdk~Gk~Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~~dedf~kk~k 167 (182)
T COG2143 112 -AVRSTPTFVFFDKTGKTILELPGYMPPE------QFLAVLKYVADGKYKDTKTDEDFTKKLK 167 (182)
T ss_pred -ccccCceEEEEcCCCCEEEecCCCCCHH------HHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 78899999999999998875 5899998 7999999998877655544443333333
No 24
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.12 E-value=2.4e-09 Score=120.84 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=107.0
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecCCCC
Q 003115 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNGPS 613 (846)
Q Consensus 536 ~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~--G~l~~~~~dg~~ 613 (846)
+.||. +..+.|+.+||+++++.. ...++||+.|+++.+++. ..||.+. ||+++...+.+.
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 45776 889999999999999821 011399999999999999 7788764 888886321100
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HccccCCCcccccCCCCCcccccccCCCCCCCCChHH
Q 003115 614 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (846)
Q Consensus 614 -~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~-~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (846)
..-+-.--.+.++...++||++|+|+.||++|+++++.+.+ .++|+++|.+++.-..+..= .........--.+
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG 223 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQG 223 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHH
Confidence 01111224677888999999999999999999999999999 99998888888764211100 0011112223446
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003115 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (846)
Q Consensus 692 v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 726 (846)
+++..+..|++.|+++ ..|+++|+++++.....
T Consensus 224 ~~l~a~~~Ly~~T~~~--~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 224 VFLGAAAYLYNATNDE--QTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Confidence 8999999999999751 38999999999887554
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.03 E-value=5.6e-10 Score=109.42 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.++.|.+.+|||+|.|+++||++|+.|.... . ++++.++. .||.|.+|.++.+++.+.| ++.|+|++
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l-~--~l~~~~~~~~~~v~v~vd~~~~~~~~~~~--------~V~~iPt~ 80 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDV-A--KLKQKYGDQVNFVMLNVDNPKWLPEIDRY--------RVDGIPHF 80 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHH-H--HHHHHhccCeeEEEEEcCCcccHHHHHHc--------CCCCCCEE
Confidence 4567778999999999999999999998633 2 35555544 3666666654434444433 88899999
Q ss_pred EEECCCCceeccc-cccC
Q 003115 208 VFLSPDLKPLMGG-TYFP 224 (846)
Q Consensus 208 v~l~pdg~~~~~~-tY~p 224 (846)
+|++++|+++... ++.+
T Consensus 81 v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 81 VFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEECCCCCEEEEEeCCCC
Confidence 9999999988642 4444
No 26
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.99 E-value=3.3e-09 Score=119.24 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=135.1
Q ss_pred CCCCCc-hhHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHhccCCC-CceeeeccCCCccccccccccCCceE
Q 003115 371 HVPHFE-KMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFY 446 (846)
Q Consensus 371 ~vPHFE-KMLyD-NA~Ll~~ya~Ay~~t~~-~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DADs~~~~~~~~~~EGayY 446 (846)
+-||.. ||+.. |+++|..|++|+++++. |.|.+.|...++|+.++|.++. |-|-...--+
T Consensus 494 PkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~---------------- 557 (786)
T KOG2244|consen 494 PKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYD---------------- 557 (786)
T ss_pred CCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeeccccc----------------
Confidence 469987 99999 99999999999999875 5999999999999999998875 4333310000
Q ss_pred EecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003115 447 VWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 526 (846)
Q Consensus 447 ~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 526 (846)
...|.+ +..
T Consensus 558 ------------------------ga~g~v------------e~~----------------------------------- 566 (786)
T KOG2244|consen 558 ------------------------GASGRV------------EHS----------------------------------- 566 (786)
T ss_pred ------------------------CCCcce------------ecc-----------------------------------
Confidence 011211 111
Q ss_pred hhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 003115 527 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 606 (846)
Q Consensus 527 ~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~ 606 (846)
.|.-+...|+||+ +++|.+|.+.|.+.++ .+||+.|+++.+.....||| +|++|.
T Consensus 567 -n~~~~~~~FldDY------AFlI~gLLDlYea~~~----------------~e~LkwA~~LQdtqdklFWd--gggYF~ 621 (786)
T KOG2244|consen 567 -NRPSKAPAFLDDY------AFLISGLLDLYEAGGG----------------IEWLKWAIKLQDTQDKLFWD--GGGYFI 621 (786)
T ss_pred -CCccccchhhhhH------HHHHHHHHHHHHccCc----------------hHHHHHHHHHHHHHHHheec--CCceee
Confidence 1122455699999 9999999999999987 68999999999999999998 678887
Q ss_pred EecCCCCCC--------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003115 607 SFRNGPSKA--------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 607 ~~~dg~~~~--------~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
+-.+++... .+-+..++..+.+|++|+.+++.+.|++.|..|+..+.++.
T Consensus 622 Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 622 SEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRLLAVFSERL 679 (786)
T ss_pred eeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 755553322 24455668899999999999999999999999998876654
No 27
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.92 E-value=4.6e-09 Score=99.09 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=61.6
Q ss_pred HHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+++..+-+ .++||+|+|+++||+.|+.|+. +| +++++.+......++||+++.|++.+.| ++.+.|+
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~l--e~la~~~~~~v~f~kVDvD~~~~la~~~--------~V~~iPT 71 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VL--AKIAEDVSNFAVIYLVDIDEVPDFNKMY--------ELYDPPT 71 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCceEEEEEECCCCHHHHHHc--------CCCCCCE
Confidence 45666654 6899999999999999999986 33 3455555434457899999999998877 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+- +|+.+..
T Consensus 72 f~~fk-~G~~v~~ 83 (114)
T cd02954 72 VMFFF-RNKHMKI 83 (114)
T ss_pred EEEEE-CCEEEEE
Confidence 99887 6777653
No 28
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.87 E-value=7.3e-08 Score=105.91 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=123.9
Q ss_pred hhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCc
Q 003115 540 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 619 (846)
Q Consensus 540 Kilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~l 619 (846)
-++...-|. +.+|...++. ++ ++|++.|++++++|.+...+.+. .+.+.++.....++.
T Consensus 80 dl~~G~aG~-~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~~---~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAGI-GLALLYFART-GD----------------PALLEAAAKIAELLAEALERGDP---ALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHHH-HHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhcccc---ccccccCCCCCCccc
Confidence 456666663 5556777777 76 78999999999999888765222 233444445567999
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~r 699 (846)
+++|-.+.+|+.+|++|+|++|++.|+++.+...++|.+.+ ++++++...+. .....++|++-++.+|++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~-~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDD-GGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCC-CCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999997654 45555432211 123689999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003115 700 LASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (846)
Q Consensus 700 L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 732 (846)
|++++++ ++|++.++++++.+......+|.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 9999975 78999999999998877655554
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=98.87 E-value=7.6e-09 Score=101.03 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=70.2
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
..+.++.+.+++|+|+|.|+++||+.|+.|.. .| .++++.++.++..++||.++.+++.+.| ++.|+|+
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Pt 109 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPT 109 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCE
Confidence 35677778888999999999999999999986 56 4477778878999999999988877666 8899999
Q ss_pred EEEECCCCceecc-ccccC
Q 003115 207 SVFLSPDLKPLMG-GTYFP 224 (846)
Q Consensus 207 ~v~l~pdg~~~~~-~tY~p 224 (846)
++|+. +|+++.. .++.+
T Consensus 110 lii~~-~G~~v~~~~G~~~ 127 (139)
T PRK10996 110 IMIFK-NGQVVDMLNGAVP 127 (139)
T ss_pred EEEEE-CCEEEEEEcCCCC
Confidence 99885 8988754 23444
No 30
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.85 E-value=4.2e-09 Score=95.93 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+.+|||+|.|+++||++|+.|.... .++++.++.++..+++|.++.|++.+.+ ++.+.|+++|+. +|
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~~-~g 77 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFFK-DK 77 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEEE-CC
Confidence 46899999999999999999998743 5678788778999999999888776655 788999999995 78
Q ss_pred ceeccc-cccCC
Q 003115 215 KPLMGG-TYFPP 225 (846)
Q Consensus 215 ~~~~~~-tY~p~ 225 (846)
+++... ++.+.
T Consensus 78 ~~v~~~~g~~~~ 89 (97)
T cd02949 78 ELVKEISGVKMK 89 (97)
T ss_pred eEEEEEeCCccH
Confidence 887643 34443
No 31
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.82 E-value=7.3e-09 Score=101.31 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++++.. +++|||+|+|+++||+.|+.|.. +| +++++.+.+....+|||+++.|++.+.| ++.+.|++
T Consensus 15 d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe~~dla~~y--------~I~~~~t~ 81 (142)
T PLN00410 15 DQAILA--EEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITEVPDFNTMY--------ELYDPCTV 81 (142)
T ss_pred HHHHHh--cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHc--------CccCCCcE
Confidence 444443 37999999999999999999986 44 5577777544455899999999999888 67788888
Q ss_pred EEECCCCc-eecccc
Q 003115 208 VFLSPDLK-PLMGGT 221 (846)
Q Consensus 208 v~l~pdg~-~~~~~t 221 (846)
+|+=.+|+ .+..++
T Consensus 82 ~~ffk~g~~~vd~~t 96 (142)
T PLN00410 82 MFFFRNKHIMIDLGT 96 (142)
T ss_pred EEEEECCeEEEEEec
Confidence 86767777 555443
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.81 E-value=1.1e-08 Score=92.47 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=59.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
..+|||+|.|+++||+.|+.|... + .++++.++..+..++||.++.+++.+.| ++.++|+++|++ +|+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~ 77 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPL-L--ERLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQ 77 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCE
Confidence 448999999999999999999874 3 5677777667888999999888776665 788999999997 888
Q ss_pred eec
Q 003115 216 PLM 218 (846)
Q Consensus 216 ~~~ 218 (846)
++.
T Consensus 78 ~~~ 80 (96)
T cd02956 78 PVD 80 (96)
T ss_pred Eee
Confidence 764
No 33
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.76 E-value=2.6e-08 Score=91.75 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.++.+.++++||+|+|+++||+.|+.|.. .| .++++.++. ....+++|.+ .+++.+.| ++.+.|+
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~--------~v~~~Pt 74 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEAD-TIDTLKRY--------RGKCEPT 74 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc--------CCCcCcE
Confidence 5677778888999999999999999999987 45 446666653 3567788888 56655544 7889998
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+. +|+++..
T Consensus 75 ~~~~~-~g~~~~~ 86 (102)
T cd02948 75 FLFYK-NGELVAV 86 (102)
T ss_pred EEEEE-CCEEEEE
Confidence 88774 8887754
No 34
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.72 E-value=2.5e-08 Score=91.92 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=59.0
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
+++++++++++ +++++|.|+++||+.|+.|.. .|+ ++++.++. ++...++|.++.+++.+.| ++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~ 71 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVR 71 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCc
Confidence 35788888765 789999999999999999997 554 56666642 4777789998888776655 788
Q ss_pred CCCcEEEEC
Q 003115 203 GWPLSVFLS 211 (846)
Q Consensus 203 G~P~~v~l~ 211 (846)
++|+++|+.
T Consensus 72 ~~Pt~~l~~ 80 (104)
T cd03000 72 GYPTIKLLK 80 (104)
T ss_pred cccEEEEEc
Confidence 999999995
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.72 E-value=3.7e-08 Score=88.94 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+|+|+|.|+++||++|+.|.. +| .++++.++.++..+++|.++.+++.+.| +..+.|+++|+. +|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~-~g~~~ 81 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTFVFFR-NGTIV 81 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEEEEEE-CCEEE
Confidence 599999999999999999986 45 3455555668999999999888776665 788999999995 88887
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 82 ~~ 83 (97)
T cd02984 82 DR 83 (97)
T ss_pred EE
Confidence 54
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.70 E-value=2.1e-08 Score=94.20 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++++..+ ++|+|+|+|+++||+.|+.|.. .| .++++.+.+..+.++||++|.|++.+.| +....|++
T Consensus 6 d~~i~~~--~~klVVVdF~a~WC~pCk~mdp-~l--~ela~~~~~~~~f~kVDVDev~dva~~y--------~I~amPtf 72 (114)
T cd02986 6 DQAIKST--AEKVLVLRFGRDEDAVCLQLDD-IL--SKTSHDLSKMASIYLVDVDKVPVYTQYF--------DISYIPST 72 (114)
T ss_pred HHHHHhc--CCCEEEEEEeCCCChhHHHHHH-HH--HHHHHHccCceEEEEEeccccHHHHHhc--------CceeCcEE
Confidence 5666665 7999999999999999999985 33 3455555333778899999999999887 67789999
Q ss_pred EEECCCCcee
Q 003115 208 VFLSPDLKPL 217 (846)
Q Consensus 208 v~l~pdg~~~ 217 (846)
+|+- +|+-+
T Consensus 73 vffk-ngkh~ 81 (114)
T cd02986 73 IFFF-NGQHM 81 (114)
T ss_pred EEEE-CCcEE
Confidence 9654 44443
No 37
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.69 E-value=1.2e-06 Score=97.47 Aligned_cols=152 Identities=20% Similarity=0.303 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC--CcchHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 623 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~~~~~~--~leDyA 623 (846)
.|.+..|+.++..+|| ++|++.|.+-+....++++|+++|.++|.+. +|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 3567899999999998 7999999999999999999999999998864 33332222 344899
Q ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
+++.|++++|+.+.+ +.+++.++++++.+. .+.+ +.|.|+....+. . . ......|+.++++..|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~-~-~------~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDDP-D-P------GNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTT-T-T------TS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCC-C-C------CCcccHHHHHHHHHHHH
Confidence 999999999999855 677788888887754 4555 456555443221 1 0 11234588899999998
Q ss_pred H-HHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003115 699 R-LASIVAGSKSDYYRQNAEHSLAVFETR 726 (846)
Q Consensus 699 r-L~~lt~~~~~~~y~~~A~~~l~~~~~~ 726 (846)
+ +..-.. +.+.|.+.|++.++.+...
T Consensus 261 ~gi~~g~~--d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLL--DPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSS--THHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCC--ccHHHHHHHHHHHHHHHhC
Confidence 7 322222 1478999999998888766
No 38
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.5e-06 Score=96.66 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=111.7
Q ss_pred CchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe--EEEEecCCCCCC
Q 003115 538 DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR--LQHSFRNGPSKA 615 (846)
Q Consensus 538 DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~--l~~~~~dg~~~~ 615 (846)
|..-=..-.++++-|++.++.+.+ ++..++-..+.+.+.+++++++++. +-. .+++..
T Consensus 110 Dat~d~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~-~~~~~~-- 169 (388)
T COG2942 110 DATKDLYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEE-DNPGSA-- 169 (388)
T ss_pred cccHhHHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccc-cCCCCC--
Confidence 333334456888888888877654 4566666777777788888876532 222 223322
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc---ccccCCCCCcccccccCCCCCCCCChHHH
Q 003115 616 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (846)
Q Consensus 616 ~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv 692 (846)
+--.+.++++.+|+|..|++|++..|++.|.+|++.+..+|.|.++|. +|+... ......+. -+.+|.+...
T Consensus 170 pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW---~p~~~frg--~~~ePGH~fE 244 (388)
T COG2942 170 PLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDW---NPAHGFRG--RGIEPGHQFE 244 (388)
T ss_pred ccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccC---CcCCCccc--CCCCCchHHH
Confidence 235667899999999999999999999999999999999999999885 555433 22222222 2568999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003115 693 SVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (846)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~ 722 (846)
+++.|++++++.++ ......|+.++..
T Consensus 245 W~~Lll~~a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 245 WAWLLLDIARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHHHHHHHHHhch---hHHHHHHHHHHHH
Confidence 99999999999875 4455566555444
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.68 E-value=7e-08 Score=87.35 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
++.++++.+++++++|.|+++||+.|+.|+. .| .++++.+.. ++..+++|.++.+++.+.| +..++|
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P 71 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFP 71 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCC
Confidence 3556666668999999999999999999975 44 457777765 6889999999887776655 788999
Q ss_pred cEEEECCCCce
Q 003115 206 LSVFLSPDLKP 216 (846)
Q Consensus 206 ~~v~l~pdg~~ 216 (846)
+.+|+++++.+
T Consensus 72 ~~~~~~~~~~~ 82 (102)
T TIGR01126 72 TIKFFPKGKKP 82 (102)
T ss_pred EEEEecCCCcc
Confidence 99999998863
No 40
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.67 E-value=7.1e-08 Score=89.11 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=52.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
.+|+|+|+|+++||+.|+.|.. .|+ ++++.. .+.+.++||.++.++.... ++. .++.|+|+++|+ .+|+.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~l----~~~-~~V~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTMEL----CRR-EKIIEVPHFLFY-KDGEK 83 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHHH----HHH-cCCCcCCEEEEE-eCCeE
Confidence 3999999999999999999874 333 234444 4678899999876532211 111 278899998888 78988
Q ss_pred ecc
Q 003115 217 LMG 219 (846)
Q Consensus 217 ~~~ 219 (846)
+..
T Consensus 84 v~~ 86 (103)
T cd02985 84 IHE 86 (103)
T ss_pred EEE
Confidence 754
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.63 E-value=1.1e-07 Score=86.68 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~G 203 (846)
+..++.+.+++++++|.|+++||+.|+.|.... .++++.+. ..++.+++|.++ .+.+.+.| ++.+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~ 75 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY--------NVKG 75 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC--------CCcc
Confidence 446777778899999999999999999998754 35566665 468888999886 55544333 7889
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|+++++. +|+++.
T Consensus 76 ~Pt~~~~~-~g~~~~ 89 (104)
T cd02997 76 FPTFKYFE-NGKFVE 89 (104)
T ss_pred ccEEEEEe-CCCeeE
Confidence 99987765 677654
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.63 E-value=1.1e-07 Score=88.63 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~-p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+++..+++.+||+||.|+++||+.|+.|... | .++++.++. +++..+||.+.. .++.+ ...++.++|+
T Consensus 12 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~~~~~~-------~~~~v~~~Pt 81 (109)
T cd02993 12 EALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQREFAK-------EELQLKSFPT 81 (109)
T ss_pred HHHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccchhhHH-------hhcCCCcCCE
Confidence 4666777889999999999999999999875 5 357777775 599999998862 33221 1137889999
Q ss_pred EEEECCCCcee
Q 003115 207 SVFLSPDLKPL 217 (846)
Q Consensus 207 ~v~l~pdg~~~ 217 (846)
++|+++++...
T Consensus 82 i~~f~~~~~~~ 92 (109)
T cd02993 82 ILFFPKNSRQP 92 (109)
T ss_pred EEEEcCCCCCc
Confidence 99999877543
No 43
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.61 E-value=9.5e-08 Score=87.41 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+-+++..+++|+++|.|+++||+.|+.|.. .|. ++++.++..+..++||.++.+++.+.| ++.++|+.
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 76 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSL 76 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEE
Confidence 3455666677899999999999999999986 444 467777777888899999888776655 78899999
Q ss_pred EEECCCCceec
Q 003115 208 VFLSPDLKPLM 218 (846)
Q Consensus 208 v~l~pdg~~~~ 218 (846)
+++ ++|+++.
T Consensus 77 ~~~-~~g~~~~ 86 (101)
T cd03003 77 YVF-PSGMNPE 86 (101)
T ss_pred EEE-cCCCCcc
Confidence 999 6787643
No 44
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8.8e-08 Score=93.57 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHH
Q 003115 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTY 194 (846)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~~~~~y~~~ 194 (846)
+.-++|++. ++=-++=++.++||+|+|+|.||..|+.|.. .+.++.. ..|-..|||.++.+++...|
T Consensus 42 ~~~~~~~s~-~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P------~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y--- 111 (150)
T KOG0910|consen 42 ATLFNVQSD-SEFDDKVINSDVPVLVDFHAEWCGPCKMLGP------ILEELVSEYAGKFKLYKVDTDEHPELAEDY--- 111 (150)
T ss_pred cccccccCH-HHHHHHHHccCCCEEEEEecCcCccHhHhhH------HHHHHHHhhcCeEEEEEEccccccchHhhc---
Confidence 355888886 6777778899999999999999999999974 4443333 36999999999999999888
Q ss_pred HHHhcCCCCCCcEEEECCCCcee-ccccccCCC
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPL-MGGTYFPPE 226 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~-~~~tY~p~~ 226 (846)
++...|+++++.. |+.. ...|+.|++
T Consensus 112 -----~I~avPtvlvfkn-Ge~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 112 -----EISAVPTVLVFKN-GEKVDRFVGAVPKE 138 (150)
T ss_pred -----ceeeeeEEEEEEC-CEEeeeecccCCHH
Confidence 7889999998865 4554 334566653
No 45
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.59 E-value=6.9e-08 Score=90.49 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=58.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
..+||++|.|+++||+.|+.|.. +|. ++++.+.. ++..++||.++.+++.+.+ ++.++|+++|+. +|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~--------~V~~~Pt~~i~~-~g 89 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARKL--------GAHSVPAIVGII-NG 89 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHHc--------CCccCCEEEEEE-CC
Confidence 47899999999999999999987 454 67777754 5778899998877766555 889999999995 88
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+.+..
T Consensus 90 ~~~~~ 94 (111)
T cd02963 90 QVTFY 94 (111)
T ss_pred EEEEE
Confidence 87653
No 46
>PHA02278 thioredoxin-like protein
Probab=98.56 E-value=1.4e-07 Score=87.70 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC----ccHHHHHHHHHHHhcCCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~----p~~~~~y~~~~~~~~g~~G~ 204 (846)
+-+++..++++||+|+|+|+||+.|+.|.. +|+ ++++..+.....++||+++. +++.+.| ++.|+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--------~I~~i 73 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF--------DIMST 73 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHHC--------CCccc
Confidence 345555578999999999999999999996 332 23333333333567777654 4555555 78899
Q ss_pred CcEEEECCCCceeccc-cccC
Q 003115 205 PLSVFLSPDLKPLMGG-TYFP 224 (846)
Q Consensus 205 P~~v~l~pdg~~~~~~-tY~p 224 (846)
|+++|+. +|+.+... +..+
T Consensus 74 PT~i~fk-~G~~v~~~~G~~~ 93 (103)
T PHA02278 74 PVLIGYK-DGQLVKKYEDQVT 93 (103)
T ss_pred cEEEEEE-CCEEEEEEeCCCC
Confidence 9998887 47777543 3344
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.55 E-value=2.6e-07 Score=82.40 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
++.+..+.+++++++|.|+++||++|+.+.. .| .++++.+ +.++..++||.++.+.+.+.| ++.++|
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~P 73 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAP-EY--EKLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYP 73 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhH-HH--HHHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCC
Confidence 5678888899999999999999999999987 44 3567777 578999999998877776655 788999
Q ss_pred cEEEECCCCcee
Q 003115 206 LSVFLSPDLKPL 217 (846)
Q Consensus 206 ~~v~l~pdg~~~ 217 (846)
+++++.++|+..
T Consensus 74 t~~~~~~~~~~~ 85 (101)
T cd02961 74 TIKLFPNGSKEP 85 (101)
T ss_pred EEEEEcCCCccc
Confidence 999999987443
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.55 E-value=3.6e-07 Score=82.25 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=61.4
Q ss_pred HHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 130 AFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 130 Al~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
.+... ++++|+|+|.|+++||+.|+.|.. .| .++++.++.+...++||.++.+.+.+.| +..++|+++
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~~ 73 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPWCGPCKMIAP-IL--EELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTLL 73 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCCCHHHHHhCH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEEE
Confidence 44443 344779999999999999999986 44 4677777777999999999887665544 788999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ ++|+++..
T Consensus 74 ~~-~~g~~~~~ 83 (101)
T TIGR01068 74 LF-KNGKEVDR 83 (101)
T ss_pred EE-eCCcEeee
Confidence 99 68887643
No 49
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.55 E-value=2.8e-07 Score=85.46 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGG 201 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkvD~ee~p~~~~~y~~~~~~~~g~ 201 (846)
.+.++++.+++++++|.|+++||+.|+.|.. +|+ ++++.+++ .+..++||.++.+++.+.| ++
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 76 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHP-IFE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY--------RI 76 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHH-HHH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC--------CC
Confidence 5677778888999999999999999999987 354 34555532 3778899999887776655 88
Q ss_pred CCCCcEEEECCCCce
Q 003115 202 GGWPLSVFLSPDLKP 216 (846)
Q Consensus 202 ~G~P~~v~l~pdg~~ 216 (846)
.++|+++|+ ++|+.
T Consensus 77 ~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 77 NKYPTLKLF-RNGMM 90 (108)
T ss_pred CcCCEEEEE-eCCcC
Confidence 899999998 67774
No 50
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.54 E-value=2.4e-07 Score=85.04 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=60.4
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
+.++.. +..++|++|.|+++||+.|+.|.. .| .++++.+...+..++||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 77 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTI 77 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEE
Confidence 344444 456889999999999999999975 34 3455556556778899999888776555 88999999
Q ss_pred EEECCCCceec
Q 003115 208 VFLSPDLKPLM 218 (846)
Q Consensus 208 v~l~pdg~~~~ 218 (846)
+++.++|+...
T Consensus 78 ~~~~~g~~~~~ 88 (104)
T cd03004 78 RLYPGNASKYH 88 (104)
T ss_pred EEEcCCCCCce
Confidence 99988756554
No 51
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.53 E-value=2e-07 Score=92.51 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHHHH--hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
++.+++.. ..+++++|+|+++||+.|+.|.. +|+ ++++.++ .++..++||.++.|++.+.|. .+.-.++.++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~ 109 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQL 109 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCC
Confidence 34455543 34689999999999999999986 444 4555565 358899999999998877661 0000123459
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHc
Q 003115 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKK 248 (846)
Q Consensus 205 P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~ 248 (846)
||++++. +|+++....+ +..++.+..++---++.|.+.++-+
T Consensus 110 PT~ilf~-~Gk~v~r~~G-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (152)
T cd02962 110 PTIILFQ-GGKEVARRPY-YNDSKGRAVPFTFSKENVIRHFDLD 151 (152)
T ss_pred CEEEEEE-CCEEEEEEec-cccCccccccccccHHHHHHhcccC
Confidence 9998885 8999875333 2222333333333346665555433
No 52
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.48 E-value=2.6e-07 Score=87.25 Aligned_cols=77 Identities=13% Similarity=-0.047 Sum_probs=61.3
Q ss_pred HHHHHHH---HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHH-HHHHHHHHHhcCCCC
Q 003115 128 EEAFAEA---RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~A---k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~-~~y~~~~~~~~g~~G 203 (846)
++-|.++ .+++++++|.|+++||+.|+.|.. .| +++++.++.....++||.++.+++. +.| ++.|
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~~l~~~~~--------~I~~ 84 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQGKCRKQK--------HFFY 84 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCChHHHHHhc--------CCcc
Confidence 4455655 689999999999999999999986 44 3677777767778999999888775 355 7789
Q ss_pred CCcEEEECCCCce
Q 003115 204 WPLSVFLSPDLKP 216 (846)
Q Consensus 204 ~P~~v~l~pdg~~ 216 (846)
+|+++++ .+|+.
T Consensus 85 ~PTl~lf-~~g~~ 96 (113)
T cd03006 85 FPVIHLY-YRSRG 96 (113)
T ss_pred cCEEEEE-ECCcc
Confidence 9999998 56653
No 53
>PTZ00051 thioredoxin; Provisional
Probab=98.46 E-value=4.4e-07 Score=82.13 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++.+.++.+++++++|.|+++||..|+.|.. .|+ ++++... ++..++||.++.+++.+.| +..++|++
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEKE--------NITSMPTF 75 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHHC--------CCceeeEE
Confidence 5677788889999999999999999999985 342 3444332 5777888988766655544 78899998
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+++ .+|+++..
T Consensus 76 ~~~-~~g~~~~~ 86 (98)
T PTZ00051 76 KVF-KNGSVVDT 86 (98)
T ss_pred EEE-eCCeEEEE
Confidence 777 78988754
No 54
>PRK09381 trxA thioredoxin; Provisional
Probab=98.45 E-value=5.7e-07 Score=83.31 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=58.9
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+.++|++|.|+++||+.|+.|.. .|+ ++++.++..+..+++|.+..+.+.+.| +..++|+++|+ ++|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 85 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 85 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCC
Confidence 456999999999999999999986 443 566667667778899999888776555 78899999999 688
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 86 ~~~~~ 90 (109)
T PRK09381 86 EVAAT 90 (109)
T ss_pred eEEEE
Confidence 88754
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.44 E-value=3.3e-07 Score=80.05 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=56.9
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
++.+-++++|++|.|+++||++|+.+.. .+ .++++. +.++..+++|.++.+++.+.| +..++|+++++
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~--~~~~~~-~~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~ 70 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAP-VL--EELAEE-YPKVKFVKVDVDENPELAEEY--------GVRSIPTFLFF 70 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhH-HH--HHHHHH-CCCceEEEEECCCChhHHHhc--------CcccccEEEEE
Confidence 4566666799999999999999999886 33 333333 567888899998877766555 77899999988
Q ss_pred CCCCceec
Q 003115 211 SPDLKPLM 218 (846)
Q Consensus 211 ~pdg~~~~ 218 (846)
. +|+++.
T Consensus 71 ~-~g~~~~ 77 (93)
T cd02947 71 K-NGKEVD 77 (93)
T ss_pred E-CCEEEE
Confidence 5 556554
No 56
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.7e-07 Score=85.25 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
+.....+.+.+|+|.|+|+++||+.|+.|+.. | .+++...+ +-+.+|||.+|.+++.+.+ ++.+.||+
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~-~--~~La~~y~-~v~Flkvdvde~~~~~~~~--------~V~~~PTf 78 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAPK-F--EKLAEKYP-DVVFLKVDVDELEEVAKEF--------NVKAMPTF 78 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhhH-H--HHHHHHCC-CCEEEEEecccCHhHHHhc--------CceEeeEE
Confidence 56667777778999999999999999999851 1 23333333 4788999999855555554 78899999
Q ss_pred EEECCCCcee
Q 003115 208 VFLSPDLKPL 217 (846)
Q Consensus 208 v~l~pdg~~~ 217 (846)
+|+ .+|+.+
T Consensus 79 ~f~-k~g~~~ 87 (106)
T KOG0907|consen 79 VFY-KGGEEV 87 (106)
T ss_pred EEE-ECCEEE
Confidence 999 555544
No 57
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.42 E-value=6.5e-07 Score=82.55 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=55.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
++.+||++|.|+++||+.|+.|.. .|. ++++.++..+..++||.++ .+++.+.| ++.++|+.+|+.+
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~~-~~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~ 83 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLKP-EYA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRP 83 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeC
Confidence 466899999999999999999986 343 4677777666677777776 55555444 7889999999998
Q ss_pred CCc
Q 003115 213 DLK 215 (846)
Q Consensus 213 dg~ 215 (846)
+++
T Consensus 84 ~~~ 86 (109)
T cd03002 84 PKK 86 (109)
T ss_pred CCc
Confidence 873
No 58
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.41 E-value=4.9e-07 Score=83.30 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=54.2
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
+...||+|+|.|+++||+.|+.|.. .|+ ++++.+. .+..++||.+ +.|++.+.| ++.++||++|+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~--------~V~~~PT~~lf~~ 81 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSRY--------GVVGFPTILLFNS 81 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHhc--------CCeecCEEEEEcC
Confidence 3467999999999999999999986 443 4556564 5777889988 677776665 7889999999986
Q ss_pred C
Q 003115 213 D 213 (846)
Q Consensus 213 d 213 (846)
.
T Consensus 82 g 82 (100)
T cd02999 82 T 82 (100)
T ss_pred C
Confidence 5
No 59
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.39 E-value=6.9e-07 Score=80.80 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=59.2
Q ss_pred HHHHHh-cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 131 FAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 131 l~~Ak~-e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
+++.-. .+++++|.|+++||+.|+.|.. .| .++++.+..++..++||.++.+++.+.| ++.++|+.++
T Consensus 9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~-~~--~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (103)
T PF00085_consen 9 FEKFINESDKPVVVYFYAPWCPPCKAFKP-IL--EKLAKEYKDNVKFAKVDCDENKELCKKY--------GVKSVPTIIF 77 (103)
T ss_dssp HHHHHTTTSSEEEEEEESTTSHHHHHHHH-HH--HHHHHHTTTTSEEEEEETTTSHHHHHHT--------TCSSSSEEEE
T ss_pred HHHHHHccCCCEEEEEeCCCCCccccccc-ee--cccccccccccccchhhhhccchhhhcc--------CCCCCCEEEE
Confidence 444444 4899999999999999999985 33 4556667668999999999888777666 8899999998
Q ss_pred ECCCCce
Q 003115 210 LSPDLKP 216 (846)
Q Consensus 210 l~pdg~~ 216 (846)
+......
T Consensus 78 ~~~g~~~ 84 (103)
T PF00085_consen 78 FKNGKEV 84 (103)
T ss_dssp EETTEEE
T ss_pred EECCcEE
Confidence 8655433
No 60
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.37 E-value=1.1e-06 Score=79.91 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=55.4
Q ss_pred HHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 130 AFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 130 Al~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.++. .++++|+++|.|+++||.+|+.|..+. .++++.+++ ++..+++|.++. ++...+ +..++|+
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~--------~~~~~Pt 76 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN-DVPSEF--------VVDGFPT 76 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch-hhhhhc--------cCCCCCE
Confidence 3444 356679999999999999999998743 566777765 699999999865 333332 5579999
Q ss_pred EEEECCCC
Q 003115 207 SVFLSPDL 214 (846)
Q Consensus 207 ~v~l~pdg 214 (846)
++++.+++
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99997765
No 61
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.35 E-value=1.2e-06 Score=79.48 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.+.++.+-.++ +++|.|+++||+.|+.|.. .|+ ++++.+.. .+..++||.++.+++.+.| ++.++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 74 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGY 74 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcC
Confidence 45667776655 5999999999999999976 454 35555544 6889999999887766555 78899
Q ss_pred CcEEEECCCCcee
Q 003115 205 PLSVFLSPDLKPL 217 (846)
Q Consensus 205 P~~v~l~pdg~~~ 217 (846)
|+++|+ ++|+++
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 677755
No 62
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.35 E-value=1e-06 Score=80.06 Aligned_cols=72 Identities=25% Similarity=0.419 Sum_probs=56.3
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee-~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
.++.+|+++|.|+++||+.|+.|... | .++++.+. .+++.+++|.++ .+++.+.| ++.++|+++|+
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~ 82 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFF 82 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEE
Confidence 34567899999999999999999752 2 34455554 469999999988 77776655 78899999999
Q ss_pred CCCCce
Q 003115 211 SPDLKP 216 (846)
Q Consensus 211 ~pdg~~ 216 (846)
.++|+.
T Consensus 83 ~~~~~~ 88 (105)
T cd02998 83 PKGSTE 88 (105)
T ss_pred eCCCCC
Confidence 988654
No 63
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.32 E-value=2.4e-06 Score=86.30 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=55.3
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~~~~ 199 (846)
...+|+|+|+|+++||+.|+.+. |.+.++.++++..|.|+.++.++-...|.+. .....
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999999875 4566666667888888865432211122110 11123
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003115 200 GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~~~ 219 (846)
+..|+|++++++++|++++.
T Consensus 134 ~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 134 GVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred CCeeCCeEEEEcCCceEEEE
Confidence 66789999999999999875
No 64
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.30 E-value=8.9e-06 Score=85.81 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=58.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
.++|++|.|+++||+.|+.|+.. | .++++.++..+...+||.++.+++.+.| ++.|+|++++++ +|++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~ 118 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKM 118 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEE
Confidence 47999999999999999999974 4 5677777766777889999888777666 889999999998 6776
Q ss_pred ec
Q 003115 217 LM 218 (846)
Q Consensus 217 ~~ 218 (846)
+.
T Consensus 119 v~ 120 (224)
T PTZ00443 119 YQ 120 (224)
T ss_pred EE
Confidence 53
No 65
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.29 E-value=1.9e-06 Score=78.66 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
+.+++.. +++ ++|.|+++||+.|+.|.. .|+ ++++.++. .+...+||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 75 (101)
T cd02994 9 SNWTLVL-EGE-WMIEFYAPWCPACQQLQP-EWE--EFADWSDDLGINVAKVDVTQEPGLSGRF--------FVTALPTI 75 (101)
T ss_pred hhHHHHh-CCC-EEEEEECCCCHHHHHHhH-HHH--HHHHhhccCCeEEEEEEccCCHhHHHHc--------CCcccCEE
Confidence 3444443 344 789999999999999987 455 44444543 5888899999888776655 78899999
Q ss_pred EEECCCCce
Q 003115 208 VFLSPDLKP 216 (846)
Q Consensus 208 v~l~pdg~~ 216 (846)
+++ ++|++
T Consensus 76 ~~~-~~g~~ 83 (101)
T cd02994 76 YHA-KDGVF 83 (101)
T ss_pred EEe-CCCCE
Confidence 987 77874
No 66
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.29 E-value=5.9e-05 Score=82.95 Aligned_cols=133 Identities=18% Similarity=0.070 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
+=++.+|++++++++| ++|++.|+++.+++.+++++.++ +++++ .++.....++....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDG-GLLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCC-CceEc-CCCCccCcccCCCcHHHH
Confidence 5678889999999998 79999999999999999876544 44443 233334557888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
.+++.++++|+|++|++.|+++.+.+...++.. - ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~--~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYAN--P----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccC--c----------------------cccCCcHhHHHHHHhhcccccC
Confidence 999999999999999999999998887554210 0 1122334456667778888875
Q ss_pred CCchHHHHHHHHHHHHHH
Q 003115 707 SKSDYYRQNAEHSLAVFE 724 (846)
Q Consensus 707 ~~~~~y~~~A~~~l~~~~ 724 (846)
++|++.+.++.+.+.
T Consensus 260 ---~~~~~~~~~~~~~~~ 274 (321)
T cd04791 260 ---ALYKAAAERLALYLI 274 (321)
T ss_pred ---hHHHHHHHHHHHHhc
Confidence 789998887766554
No 67
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.29 E-value=2.6e-06 Score=77.46 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=59.0
Q ss_pred HHHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.++.. .+.+++++|.|+++||+.|+.|... | .++++.+...+..+++|.++.+++.+.| ++.++|+
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~i~~~P~ 75 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQY--------GVRGFPT 75 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHHC--------CCCccCE
Confidence 4556554 4557779999999999999999863 4 4456666667788899999887765554 7889999
Q ss_pred EEEECCCCc
Q 003115 207 SVFLSPDLK 215 (846)
Q Consensus 207 ~v~l~pdg~ 215 (846)
.+++.++.+
T Consensus 76 ~~~~~~~~~ 84 (103)
T cd03001 76 IKVFGAGKN 84 (103)
T ss_pred EEEECCCCc
Confidence 999986633
No 68
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.29 E-value=2.2e-06 Score=80.80 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.+.++.+.+++|+|.|+++||++|+.|.. .+++ +++.. +..-.++||.++.|++...| ++.+.|+++
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~~--la~~~-~~i~~~~vd~d~~~~l~~~~--------~v~~vPt~~ 80 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLEE--LSELS-DKLKLEIYDFDEDKEKAEKY--------GVERVPTTI 80 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHH-HHHH--HHHhc-CceEEEEEeCCcCHHHHHHc--------CCCcCCEEE
Confidence 445566677889999999999999999986 3332 34333 45567889999888877766 888999999
Q ss_pred EECCCC---ceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 209 FLSPDL---KPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 209 ~l~pdg---~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
|+..++ +..+.| .|+. ..|.++++.|..
T Consensus 81 i~~~g~~~~~~~~~G--~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 81 FLQDGGKDGGIRYYG--LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred EEeCCeecceEEEEe--cCch-----HHHHHHHHHHHh
Confidence 998643 322221 3433 367777777653
No 69
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.29 E-value=1.8e-06 Score=81.38 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.+.++.+++++|+|.|+++||..|+.|.. ++ +++++... +...++||.++.+++.+.| ++.++|+.
T Consensus 12 ~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l--~~la~~~~-~i~f~~Vd~~~~~~l~~~~--------~v~~vPt~ 79 (113)
T cd02989 12 EKEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HL--EILAKKHL-ETKFIKVNAEKAPFLVEKL--------NIKVLPTV 79 (113)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCccHHHHHH-HH--HHHHHHcC-CCEEEEEEcccCHHHHHHC--------CCccCCEE
Confidence 4677777788999999999999999999985 22 23333332 4678999999999887776 78899999
Q ss_pred EEECCCCceec
Q 003115 208 VFLSPDLKPLM 218 (846)
Q Consensus 208 v~l~pdg~~~~ 218 (846)
+++. +|+.+.
T Consensus 80 l~fk-~G~~v~ 89 (113)
T cd02989 80 ILFK-NGKTVD 89 (113)
T ss_pred EEEE-CCEEEE
Confidence 9887 667664
No 70
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.24 E-value=2.9e-06 Score=80.90 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=49.0
Q ss_pred cCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc---cHHHHHHHHHHHhcCCC-CCC
Q 003115 137 RDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGG-GWP 205 (846)
Q Consensus 137 e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p---~~~~~y~~~~~~~~g~~-G~P 205 (846)
++|||+|.|+| +||+.|++|+. +++ ++++....+...++||+++.| +....+. ...++. +.|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l~--~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~----~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEP-VVR--EALKAAPEDCVFIYCDVGDRPYWRDPNNPFR----TDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhch-hHH--HHHHHCCCCCEEEEEEcCCcccccCcchhhH----hccCcccCCC
Confidence 48999999999 99999999986 332 345555446778899988754 1111221 112566 999
Q ss_pred cEEEECCCCc
Q 003115 206 LSVFLSPDLK 215 (846)
Q Consensus 206 ~~v~l~pdg~ 215 (846)
|++++...++
T Consensus 93 T~~~~~~~~~ 102 (119)
T cd02952 93 TLLRWKTPQR 102 (119)
T ss_pred EEEEEcCCce
Confidence 9999965433
No 71
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.23 E-value=2.3e-06 Score=81.74 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=66.3
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChh--hh--hhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 129 EAFAEA-RKRDVPIFLSIGYSTCHW--CH--VMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~w--C~--~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
+-|++. ++..+||+++|.+.||+. |+ .|+. ++. ..-+++| ......+|||.++.+++.+.| |+.
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p-~~~-~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I~ 86 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEE-LVL-ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GLD 86 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchh-hHH-HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CCc
Confidence 344443 455679999999999988 99 6653 222 1223444 446999999999999999888 899
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i 241 (846)
|+||.+++. +|+++.-.+..+++ .+.+.|+++
T Consensus 87 ~iPTl~lfk-~G~~v~~~G~~~~~------~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFK-DDEVIEYDGEFAAD------TLVEFLLDL 118 (120)
T ss_pred cccEEEEEE-CCEEEEeeCCCCHH------HHHHHHHHH
Confidence 999999885 88877533445543 455555543
No 72
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.22 E-value=1.8e-06 Score=82.70 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=50.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---C--eEEEEEcCCCCccHHHHH---------------HHH
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVY---------------MTY 194 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~--FV~vkvD~ee~p~~~~~y---------------~~~ 194 (846)
.-.||+|+|.|+++||+.|+.+... +. ++.+.+.+ + +|.|.+|.++ .++.+.+ ...
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~-l~--~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKESGKNFEIVFISWDRDE-ESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHH-HH--HHHHHHHhcCCCEEEEEEECCCCH-HHHHHHHHcCCeeEcccCCHHHHHH
Confidence 3468999999999999999997642 11 12222322 3 5555555442 2221111 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.....++.++|+++|++++|+++..
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEcc
Confidence 2223588899999999999998864
No 73
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.22 E-value=4.6e-06 Score=85.29 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=54.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhcC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~~~~g 200 (846)
..||+|+|.|+++||+.|+.+.. .+.++-++++..|-|+.++.++-.+.|.+. .....|
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 36999999999999999998764 344444456666677665444422223221 111247
Q ss_pred CCCCCcEEEECCCCceeccc
Q 003115 201 GGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~~ 220 (846)
+.|+|+++|+|++|++.+..
T Consensus 140 v~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCcCCeEEEECCCceEEEEE
Confidence 78999999999999988753
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.5e-06 Score=90.60 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=69.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
..+||+|+|+++||+.|+.+.. .=..++.-.+-.|+.+|||.++.|+|...| |+.++|+.|. =.||+|
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p---~Lekla~~~~G~f~LakvN~D~~p~vAaqf--------giqsIPtV~a-f~dGqp 109 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTP---TLEKLAAEYKGKFKLAKVNCDAEPMVAAQF--------GVQSIPTVYA-FKDGQP 109 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHH---HHHHHHHHhCCceEEEEecCCcchhHHHHh--------CcCcCCeEEE-eeCCcC
Confidence 3579999999999999999985 224556666678999999999999999877 8899998764 578999
Q ss_pred ecccc-ccCCCCCCCcccHHHHHHHHHHH
Q 003115 217 LMGGT-YFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 217 ~~~~t-Y~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
+-+.. -.|.+ ...+.|+++...
T Consensus 110 VdgF~G~qPes------qlr~~ld~~~~~ 132 (304)
T COG3118 110 VDGFQGAQPES------QLRQFLDKVLPA 132 (304)
T ss_pred ccccCCCCcHH------HHHHHHHHhcCh
Confidence 98743 34432 466677776644
No 75
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.14 E-value=8.3e-06 Score=80.54 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=53.7
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--------CeEEEEEcCCCCccHHHHHH-------------
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYM------------- 192 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--------~FV~vkvD~ee~p~~~~~y~------------- 192 (846)
+.=.||+|+|.|+|+||+.|+..-. .+. ++.+.+++ .|..|-|+.++.+...+.|.
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P-~L~--~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAP-KLK--DFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 3446899999999999999998653 111 22222322 47777777665433111121
Q ss_pred ----HHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 193 ----TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 193 ----~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
..+....+..|+|+++++|++|+++..
T Consensus 98 ~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 98 DEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 112223578899999999999999864
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.11 E-value=6.4e-06 Score=78.34 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHH---------------
Q 003115 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTY--------------- 194 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~--------------- 194 (846)
+..+.-+|||++|.|+++||+.|+.+.. .+.++-++. +..|-|+.+..++-.+.|.+.
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 4444445999999999999999999764 333333332 555555543322221212110
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~~-tY~p~ 225 (846)
+....++.++|+++|++++|+++... ++++.
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 11123778999999999999988753 44543
No 77
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.11 E-value=0.00042 Score=82.02 Aligned_cols=272 Identities=17% Similarity=0.199 Sum_probs=155.9
Q ss_pred hccccCCCCCC-CCCCC--C---hhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEE-EEc-
Q 003115 295 SYDSRFGGFGS-APKFP--R---PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSV- 366 (846)
Q Consensus 295 ~~D~~~GGfg~-apKFP--~---~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~R-Ysv- 366 (846)
.+.+.+||+.+ .|.++ - ...|.-+.+.+..++ |++.++.+...++.+.. -.+ ..||.. |..
T Consensus 40 ~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~-------D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~~ 108 (520)
T PF07944_consen 40 NFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTG-------DPELKAKADEIVDELAA--AQQ--PDGYLGTYPEE 108 (520)
T ss_pred CccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH--hcc--CCceecccccc
Confidence 44456787762 22222 1 234444444444332 56777777777777765 222 445443 222
Q ss_pred -----CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCcccccccccc
Q 003115 367 -----DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKK 441 (846)
Q Consensus 367 -----D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~ 441 (846)
+..|.. ---.+|...-|+.+...+|+.+|++..+++|.+.++|+.+.+..- | .+.
T Consensus 109 ~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~-~-------~~~---------- 168 (520)
T PF07944_consen 109 RNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRL-G-------PEP---------- 168 (520)
T ss_pred cccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC-C-------HHH----------
Confidence 234544 123489999999999999999999999999999999995433110 0 000
Q ss_pred CCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHH
Q 003115 442 EGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGEC 521 (846)
Q Consensus 442 EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~ 521 (846)
++...
T Consensus 169 ------------------------------------------------~~~~~--------------------------- 173 (520)
T PF07944_consen 169 ------------------------------------------------GQKMG--------------------------- 173 (520)
T ss_pred ------------------------------------------------hhccc---------------------------
Confidence 00000
Q ss_pred HHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC
Q 003115 522 RRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT 601 (846)
Q Consensus 522 r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~ 601 (846)
.+. .+-|..+|+++|+++|| ++||+.|+...+ ...+++.
T Consensus 174 --------------------~~~-~~~i~~~l~~LY~~Tgd----------------~~yL~lA~~f~~---~~~~~~~- 212 (520)
T PF07944_consen 174 --------------------YPE-HGGINEALVRLYEITGD----------------ERYLDLAEYFVD---QRGFDPY- 212 (520)
T ss_pred --------------------ccc-cchHHHHHHHHHHHhCC----------------HHHHHHHHHHHH---HhCCCCC-
Confidence 000 13445789999999998 799999977664 3343330
Q ss_pred CeEEEEecCCCC-----CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccc
Q 003115 602 HRLQHSFRNGPS-----KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 676 (846)
Q Consensus 602 G~l~~~~~dg~~-----~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~ 676 (846)
+..+. .+..+ ...+..--.+++..|..++|++|||++|++.++.+++.+.++-.= -+||.-.... .|....
T Consensus 213 ~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y-~tGg~g~~~~-~E~f~~ 288 (520)
T PF07944_consen 213 DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMY-ATGGIGSDHE-GEHFGP 288 (520)
T ss_pred chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCee-ccCCCcCCCC-CccCCC
Confidence 00110 01111 111222234678899999999999999999999999988764221 2344433310 011100
Q ss_pred c--ccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003115 677 R--VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 720 (846)
Q Consensus 677 R--~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l 720 (846)
. ........+-....-+.....+|.++||+ ..|.+..|+++
T Consensus 289 ~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~l 331 (520)
T PF07944_consen 289 PYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERAL 331 (520)
T ss_pred CCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 0 00001112222222355556688889886 78999988764
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.10 E-value=8.6e-06 Score=77.97 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHH--HHHHHHHHHh---cCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD--KVYMTYVQAL---YGGG 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~--~~y~~~~~~~---~g~~ 202 (846)
.+.+.+.-+.++.++|.||++||+||+.|.. .+ .++++..+..|+.|.+|.+..+++. ..+..+.+.. .+..
T Consensus 13 ~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P-~l--~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 13 VVRALEALDKKETATFFIGRKTCPYCRKFSG-TL--SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHHcCCcEEEEEECCCChhHHHHhH-HH--HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 3556666678999999999999999999985 22 3444443334666666654332322 1233333322 3567
Q ss_pred CCCcEEEECCCCceecc
Q 003115 203 GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~ 219 (846)
|.|+.|++ .+|+.+..
T Consensus 90 ~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 90 GTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CCCEEEEE-eCCeEEEE
Confidence 89999965 45666653
No 79
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.09 E-value=6.7e-06 Score=77.56 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=54.0
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCC--CccHHHHHHHHHHHhcCCC
Q 003115 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~ 202 (846)
+.+++. +..+|||+|.|+++||+.|+.|.. +|+ ++++.+.+ .+...+||.+. .+++.+.| ++.
T Consensus 9 ~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--------~i~ 77 (114)
T cd02992 9 ASFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF--------GVT 77 (114)
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC--------CCC
Confidence 344444 455689999999999999999986 565 46666643 25567788543 34444433 788
Q ss_pred CCCcEEEECCCCce
Q 003115 203 GWPLSVFLSPDLKP 216 (846)
Q Consensus 203 G~P~~v~l~pdg~~ 216 (846)
++|+++|+.+..+.
T Consensus 78 ~~Pt~~lf~~~~~~ 91 (114)
T cd02992 78 GYPTLRYFPPFSKE 91 (114)
T ss_pred CCCEEEEECCCCcc
Confidence 99999999776633
No 80
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.04 E-value=6.1e-06 Score=96.50 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cC--eEEEEEcC---CCCc-cHHHHH---------------HHH
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDR---EERP-DVDKVY---------------MTY 194 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~--FV~vkvD~---ee~p-~~~~~y---------------~~~ 194 (846)
+||||+|+|+++||++|+.+..+. .++.+..+ +. ||.|.++. ++.+ ++.+.+ ...
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L---~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGET---EKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 699999999999999999976422 12333332 22 34444321 1111 111100 111
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc-ccccCC
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 225 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~-~tY~p~ 225 (846)
. ...++.++|+++|++++|+++.. .++.+.
T Consensus 132 a-k~fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 132 A-QSLNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred H-HHcCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 1 22378899999999999999875 345553
No 81
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.04 E-value=1.5e-05 Score=71.80 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCC-ccHHHHH----------------HHHHHHh
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREER-PDVDKVY----------------MTYVQAL 198 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~-p~~~~~y----------------~~~~~~~ 198 (846)
||+++|+|+++||+.|+..-... .++.+.++ +.+..|-|..++. .+..+.+ ...+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 79999999999999999865422 23555565 4444444443332 1111111 1122334
Q ss_pred cCCCCCCcEEEECCCCce
Q 003115 199 YGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~ 216 (846)
.+..++|++++++++|++
T Consensus 78 ~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TSSSEEEEEETTSBE
T ss_pred CCCCcCCEEEEECCCCCC
Confidence 588899999999999974
No 82
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.03 E-value=5.6e-06 Score=77.99 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHH--------------HHH
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY--------------MTY 194 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y--------------~~~ 194 (846)
.+..+...+|+++|.|+++||+.|+.+.. .+.++.++ .++.|.+|.+..+.+.+.. .+.
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~------~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSP------TVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVI 85 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhCh------HHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHH
Confidence 34445556799999999999999999853 22222222 3444554433111111100 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~~-tY~p~ 225 (846)
. ...+..++|+++|++++| +.... ++.++
T Consensus 86 ~-~~~~i~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 86 S-ARWGVSVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred H-HhCCCCcccEEEEEcCCC-eEEEEeccCCH
Confidence 1 123778999999999999 65543 45554
No 83
>PTZ00102 disulphide isomerase; Provisional
Probab=98.03 E-value=6.4e-06 Score=95.65 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=58.5
Q ss_pred HHHHHH-HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 129 eAl~~A-k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
+.+++. .+++|+|||.|+++||++|+.|+. +|+ ++++.+. .+++.+++|.+..+...+.| +..|+|
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~--------~v~~~P 433 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF--------SWSAFP 433 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC--------CCcccC
Confidence 444444 788999999999999999999986 565 3344443 36888999998776554444 678999
Q ss_pred cEEEECCCCce
Q 003115 206 LSVFLSPDLKP 216 (846)
Q Consensus 206 ~~v~l~pdg~~ 216 (846)
+++|+.++++.
T Consensus 434 t~~~~~~~~~~ 444 (477)
T PTZ00102 434 TILFVKAGERT 444 (477)
T ss_pred eEEEEECCCcc
Confidence 99999988764
No 84
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.03 E-value=1.8e-05 Score=73.56 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=50.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH-------------HHHHHhcCCCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-------------TYVQALYGGGG 203 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~-------------~~~~~~~g~~G 203 (846)
++||++|.|+++||+.|+.+... ++ ++.+.....+..|.+- +..++-.+.+. .......+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 58999999999999999997643 32 3444444444444441 22222111111 11222347788
Q ss_pred CCcEEEECCCCceeccc
Q 003115 204 WPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~~ 220 (846)
+|+++++|++|++++.+
T Consensus 96 ~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 96 LPYAVLLDEAGVIAAKG 112 (114)
T ss_pred cCeEEEECCCCeEEecc
Confidence 99999999999988753
No 85
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.02 E-value=8.2e-06 Score=74.01 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCC-ccHHHHHHHH-------------
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTY------------- 194 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~-p~~~~~y~~~------------- 194 (846)
.+..++..+|+++|.|+++||+.|+.+.. .+. ++.+.+. .++..+.|+.+.. ++..+.+.+.
T Consensus 11 ~~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~--~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 11 PVSLSDLKGKVVLVNFWASWCPPCRAEMP-ELE--ALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred EeehHHcCCCEEEEEeecccChhHHHHhH-HHH--HHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 44455556999999999999999998643 222 2333332 2455566666543 3322222111
Q ss_pred -HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 -~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.....+..++|.++++||+|+++..
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEEEE
Confidence 1222366799999999999998764
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.00 E-value=1.8e-05 Score=76.20 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=52.3
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHH----------------
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYM---------------- 192 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~---------------- 192 (846)
..+.-.||+|+|.|+++||+.|+.+..+ ++ ++.+.+.+ .+..|-|+.++.++--+.|+
T Consensus 11 ~l~~~~Gk~vll~F~atwC~~C~~~~p~-l~--~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 11 PVSALEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred cHHHhCCCEEEEEEECCCCchHHHHHHH-HH--HHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 3444468999999999999999986531 11 22333333 34444455444332111111
Q ss_pred -HHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 193 -TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 193 -~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.......++.|+|+++|++++|+++..
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEch
Confidence 112223578899999999999998864
No 87
>PTZ00102 disulphide isomerase; Provisional
Probab=97.98 E-value=1.2e-05 Score=93.54 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
++.+..+.++++++||.|+++||+.|+.|+.+.. ++++.++ .+++.++||.++.+++.+.| ++.|+
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~--------~i~~~ 107 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQEF--------GVRGY 107 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHhc--------CCCcc
Confidence 4567777788999999999999999999987532 3444554 35899999999888877666 78899
Q ss_pred CcEEEECCCCce
Q 003115 205 PLSVFLSPDLKP 216 (846)
Q Consensus 205 P~~v~l~pdg~~ 216 (846)
|+++++..++..
T Consensus 108 Pt~~~~~~g~~~ 119 (477)
T PTZ00102 108 PTIKFFNKGNPV 119 (477)
T ss_pred cEEEEEECCceE
Confidence 999999876543
No 88
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.98 E-value=2e-05 Score=73.93 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=51.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
++||+|.|+++||+.|+.|.. ++ .++++.+. +...++||.++. ++.+.| ++.++|+.+++. +|+++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~-~l--~~la~~~~-~v~f~~vd~~~~-~l~~~~--------~i~~~Pt~~~f~-~G~~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS-HL--EELAAKYP-ETKFVKINAEKA-FLVNYL--------DIKVLPTLLVYK-NGELI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH-HH--HHHHHHCC-CcEEEEEEchhh-HHHHhc--------CCCcCCEEEEEE-CCEEE
Confidence 499999999999999999986 44 24555443 455678998876 655554 788999988775 57877
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 90 ~~ 91 (113)
T cd02957 90 DN 91 (113)
T ss_pred EE
Confidence 54
No 89
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.98 E-value=0.00084 Score=73.65 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCC----CC---CCCc
Q 003115 548 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPS----KA---PGFL 619 (846)
Q Consensus 548 lmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~~----~~---~~~l 619 (846)
|..--+++.++++++ ++|++.+..-..-..+++.||++|.+||.|. +|+- .. +.++
T Consensus 139 Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fW 202 (357)
T COG4225 139 MAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFW 202 (357)
T ss_pred hhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceee
Confidence 445678899999997 8999999988888899999999999999974 3311 11 1222
Q ss_pred c-hHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHH
Q 003115 620 D-DYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 693 (846)
Q Consensus 620 e-DyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~ 693 (846)
- ..++++.++.++.+.-.+. .+.+.-..+.+.+.+ .-| ++|-|+-.- +++ |+ .-..+-|+.+..
T Consensus 203 aRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiL-Dd~----~~---~sy~EsSaSa~f 272 (357)
T COG4225 203 ARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTIL-DDG----RP---GSYLESSASAGF 272 (357)
T ss_pred ecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhh-ccC----CC---CCchhhhHHHHH
Confidence 2 5677788888888765443 233444445544443 345 566666432 221 11 123456888888
Q ss_pred HHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003115 694 VINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 694 a~~L~r---L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
|-+|++ ++-+. ++|...+++.++.+...+...
T Consensus 273 aYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 273 AYALLKGINLGILD-----PEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred HHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhcccc
Confidence 888887 55553 567788888888876666443
No 90
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.98 E-value=1.3e-05 Score=75.52 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=66.1
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHh
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~ 198 (846)
.+|..-.+.-|+.--+.|.+++|+|+++| |+.|+.|+. .| +++++.+......++||.++.|.+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P-~l--eela~e~~~~v~f~kVdid~~~~la~~f------- 79 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAV-VL--PELLKAFPGRFRAAVVGRADEQALAARF------- 79 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHh-HH--HHHHHHCCCcEEEEEEECCCCHHHHHHc-------
Confidence 44554444444444478899999999997 999999986 22 4566666555678899999999988877
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.|+||.+|+- +|+++..
T Consensus 80 -~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 80 -GVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred -CCCcCCEEEEEE-CCEEEEE
Confidence 889999998886 6787764
No 91
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.96 E-value=1.6e-05 Score=91.51 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
++.+..+.+++|++||.|+++||+.|+.|..+. .++++.++. ++..++||.++.+++.+.| ++.|+
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~ 76 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY--------GVSGY 76 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC--------CCccc
Confidence 456777778899999999999999999998743 345665653 3889999999887776655 88899
Q ss_pred CcEEEECCCC
Q 003115 205 PLSVFLSPDL 214 (846)
Q Consensus 205 P~~v~l~pdg 214 (846)
|+.+++...+
T Consensus 77 Pt~~~~~~g~ 86 (462)
T TIGR01130 77 PTLKIFRNGE 86 (462)
T ss_pred cEEEEEeCCc
Confidence 9988886443
No 92
>PHA02125 thioredoxin-like protein
Probab=97.95 E-value=2.1e-05 Score=68.49 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=46.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecccc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 221 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~t 221 (846)
++.|+++||++|+.|+.. |+ + + .|..++||.++.+++.+.| ++.++|+++ +|+.+....
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l~--~----~--~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~~~~~ 60 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-LA--N----V--EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTLDRFT 60 (75)
T ss_pred EEEEECCCCHhHHHHHHH-HH--H----H--hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEEEEEe
Confidence 678999999999999863 32 1 1 3677899998888877766 788999987 576654332
Q ss_pred ccCC
Q 003115 222 YFPP 225 (846)
Q Consensus 222 Y~p~ 225 (846)
.+|+
T Consensus 61 G~~~ 64 (75)
T PHA02125 61 GVPR 64 (75)
T ss_pred CCCC
Confidence 2354
No 93
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.89 E-value=2.5e-05 Score=68.13 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=45.2
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
+.-|+++||++|+.|.. .+ .++++.++..+-.++||.++.+++.+.| |..+.|+.++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR-VV--EEVAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDV 63 (82)
T ss_pred EEEEECCCCcchHHHHH-HH--HHHHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEE
Confidence 34589999999999986 22 3344445556777899999888776655 7889999987 6664
No 94
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.84 E-value=4.5e-05 Score=76.00 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHH---HHHHHHhc---CCCC
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY---MTYVQALY---GGGG 203 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y---~~~~~~~~---g~~G 203 (846)
+....+++.+|.|+++||++|+.+. |.+.++-++ .++.|.+|....+.....+ ........ +..+
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~ 118 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV 118 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC
Confidence 3344567789999999999999974 444443332 3556655543211111011 11111222 5679
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
.|+++++|++|+.+.
T Consensus 119 iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 119 TPATFLVNVNTRKAY 133 (153)
T ss_pred CCeEEEEeCCCCEEE
Confidence 999999999988654
No 95
>PLN02309 5'-adenylylsulfate reductase
Probab=97.84 E-value=2.7e-05 Score=89.93 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=55.0
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
+.+.++|++||.|+++||+.|+.|+. .|. ++++.++. ++..++||.+ +..++.+. ..++.++||++|+
T Consensus 360 ~~~~~~k~vlV~FyApWC~~Cq~m~p-~~e--~LA~~~~~~~V~f~kVD~d~~~~~la~~-------~~~I~~~PTil~f 429 (457)
T PLN02309 360 KLENRKEPWLVVLYAPWCPFCQAMEA-SYE--ELAEKLAGSGVKVAKFRADGDQKEFAKQ-------ELQLGSFPTILLF 429 (457)
T ss_pred HhhcCCCeEEEEEECCCChHHHHHHH-HHH--HHHHHhccCCeEEEEEECCCcchHHHHh-------hCCCceeeEEEEE
Confidence 34578999999999999999999987 354 67777754 5999999998 44443321 1278899999999
Q ss_pred CCCC
Q 003115 211 SPDL 214 (846)
Q Consensus 211 ~pdg 214 (846)
.+..
T Consensus 430 ~~g~ 433 (457)
T PLN02309 430 PKNS 433 (457)
T ss_pred eCCC
Confidence 7654
No 96
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.82 E-value=4.8e-05 Score=88.01 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=52.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCc--cHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP--DVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p--~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
++.+|||||.|+++||+.|+.|+.. | +++++.+... +..++||.+..+ ...+.| ++.++|+++|+.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~--------~I~~~PTii~Fk 436 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILFFP 436 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHc--------CCCccceEEEEE
Confidence 5689999999999999999999974 5 6677777543 666777776543 222333 788999999997
Q ss_pred CCC
Q 003115 212 PDL 214 (846)
Q Consensus 212 pdg 214 (846)
.+.
T Consensus 437 ~g~ 439 (463)
T TIGR00424 437 KHS 439 (463)
T ss_pred CCC
Confidence 764
No 97
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=0.0001 Score=73.60 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHH
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQA 197 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~--------------~~~~ 197 (846)
.+.-++|+++|.|+++||+.|+.... .|. ++++.+++ .+..|-|+.++.++..+.|.+ ....
T Consensus 56 l~~~~~k~~~l~f~a~~C~~C~~~~~-~l~--~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 56 LKDLKGKGVFLNFWGTWCKPCEKEMP-YMN--ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred HHHcCCCEEEEEEECCcCHHHHHHHH-HHH--HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 33346899999999999999987543 222 33333332 344445554433221111111 1112
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
..|..++|++++++++|+++..
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEE
Confidence 2478899999999999999854
No 98
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.74 E-value=5.8e-05 Score=68.80 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC--CCCcEEEECCC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD 213 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~--G~P~~v~l~pd 213 (846)
++|+++.|+++||..|+.|.. .| .+|++.++..+..++||.++.+++.+.| |.. ++|+.+++...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~--~~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RF--KEVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLS 78 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecc
Confidence 799999999999999999986 33 4788888778999999999887776655 666 99999999984
No 99
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.73 E-value=0.0011 Score=68.09 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCC
Q 003115 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 617 (846)
Q Consensus 546 NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~d-g-----~~--~~~~ 617 (846)
+|.+|+.|++||.+++| ++|+++|.++.+.+.-.. +.|++...+.+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 47779999999999998 899999999998876443 23555554433 2 11 2235
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHH
Q 003115 618 FLDDYAFLISGLLDLYEFGSGTKWLV---WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~~yL~---~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a 694 (846)
.|+++.+.+.||-+++..+++.+..+ ...+-++.++..| |...+-+|+-..- . .. ..-.-+-+.=..+.+
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~--~--~~--~~~~~a~~~YH~lHi 165 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHF--T--LG--NAPNIARWDYHRLHI 165 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcccc--c--cc--cCcCcCcchHHHHHH
Confidence 78999999999999999999987654 4444455555544 6544556663210 0 00 000111122335677
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHH
Q 003115 695 INLVRLASIVAGSKSDYYRQNAEH 718 (846)
Q Consensus 695 ~~L~rL~~lt~~~~~~~y~~~A~~ 718 (846)
..|..|+.+|++ +.+++.|++
T Consensus 166 ~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 166 QQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHhcCC---HHHHHHHHH
Confidence 888999999986 778777753
No 100
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.71 E-value=0.0021 Score=71.65 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=96.7
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH-HHHHHHHH
Q 003115 554 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDL 632 (846)
Q Consensus 554 a~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~-~i~aLl~L 632 (846)
...++.++| ++|++.+.++++++......+..|++.+ ......-.+-|-.+ .+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~----~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWH----NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBEC----TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCcccc----CCCCCCceeeccccccHHHHHHH
Confidence 447788887 7999999999998888777655677876 11222233456554 77788889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 003115 633 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 712 (846)
Q Consensus 633 Ye~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y 712 (846)
++.|||++|++.|.+-+....++.+|+++|-|+-.-...+. .+..+..=--||+=++..|.++.+.+.++ ...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~-----~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~--~~~ 209 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGY-----ADWSDSFWSRGNGWAIYGLAEVLEYLPED--HPE 209 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSS-----STTST--BHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCC-----cCcccccCcchhhHHHHHHHHHHHHhcch--hhh
Confidence 99999999999999999999999999998877643211100 00000000125666777788888887541 333
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003115 713 RQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 713 ~~~A~~~l~~~~~~i~~~ 730 (846)
++...++++.+...+.+.
T Consensus 210 ~~~~~~~~~~~~~~l~~~ 227 (336)
T PF07470_consen 210 RDELLEIAKKLADALARY 227 (336)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444445555555545443
No 101
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.70 E-value=0.00011 Score=74.76 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=50.2
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+++|+|+|+++||+.|+.|.. ++ .++++.. .+...+|||.++. ++...| ++.++|+++|+- +|+++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~-~l--~~LA~~~-~~vkF~kVd~d~~-~l~~~f--------~v~~vPTlllyk-~G~~v 148 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNS-SL--LCLAAEY-PAVKFCKIRASAT-GASDEF--------DTDALPALLVYK-GGELI 148 (175)
T ss_pred CcEEEEEEECCCCchHHHHHH-HH--HHHHHHC-CCeEEEEEeccch-hhHHhC--------CCCCCCEEEEEE-CCEEE
Confidence 359999999999999999986 33 2344433 2577889998865 555544 788999998876 57877
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 149 ~~ 150 (175)
T cd02987 149 GN 150 (175)
T ss_pred EE
Confidence 53
No 102
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.9e-05 Score=80.40 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
.++.-+|.|+|+|+++||+.|+.... .|+ .+-|+ .+|.+|||+++-......+ |+...||+||+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP-~Fs-----~lankYp~aVFlkVdVd~c~~taa~~--------gV~amPTFiff 81 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAP-IFS-----DLANKYPGAVFLKVDVDECRGTAATN--------GVNAMPTFIFF 81 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhh-HHH-----HhhhhCcccEEEEEeHHHhhchhhhc--------CcccCceEEEE
Confidence 45567899999999999999999874 444 44444 6999999999866665544 88999999998
Q ss_pred CCC
Q 003115 211 SPD 213 (846)
Q Consensus 211 ~pd 213 (846)
-..
T Consensus 82 ~ng 84 (288)
T KOG0908|consen 82 RNG 84 (288)
T ss_pred ecC
Confidence 654
No 103
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.68 E-value=0.00012 Score=79.43 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=47.7
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCc---cHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p---~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
.-.+|+++|.|+++||+.|+.|.. ++ .++++..+-.++.|.+|.+..+ .++. -....+ ..|+.++|+++|++
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P-~L--~~la~~yg~~Vi~VsvD~~~~~~fp~~~~-d~~la~-~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAP-IL--QAFEDRYGIEVLPVSVDGGPLPGFPNARP-DAGQAQ-QLKIRTVPAVFLAD 237 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhH-HH--HHHHHHcCcEEEEEeCCCCccccCCcccC-CHHHHH-HcCCCcCCeEEEEE
Confidence 345899999999999999999764 22 2333333223556666654322 1110 011112 23889999999999
Q ss_pred CCCcee
Q 003115 212 PDLKPL 217 (846)
Q Consensus 212 pdg~~~ 217 (846)
++|+.+
T Consensus 238 ~~~~~v 243 (271)
T TIGR02740 238 PDPNQF 243 (271)
T ss_pred CCCCEE
Confidence 965444
No 104
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.62 E-value=7.6e-05 Score=65.33 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=44.3
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTY 222 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY 222 (846)
|.|+++||++|+.|.. . =.++++.++..+..++|| .++....| |..+.|++++ ||+.+..| .
T Consensus 3 i~~~a~~C~~C~~~~~-~--~~~~~~e~~~~~~~~~v~---~~~~a~~~--------~v~~vPti~i---~G~~~~~G-~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEK-N--VKKAVEELGIDAEFEKVT---DMNEILEA--------GVTATPGVAV---DGELVIMG-K 64 (76)
T ss_pred EEEECCCCcCHHHHHH-H--HHHHHHHcCCCeEEEEeC---CHHHHHHc--------CCCcCCEEEE---CCEEEEEe-c
Confidence 7789999999999985 2 235555565567777787 12222222 8889999998 88888433 3
Q ss_pred cCC
Q 003115 223 FPP 225 (846)
Q Consensus 223 ~p~ 225 (846)
.|.
T Consensus 65 ~~~ 67 (76)
T TIGR00412 65 IPS 67 (76)
T ss_pred cCC
Confidence 453
No 105
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.62 E-value=0.00021 Score=73.29 Aligned_cols=97 Identities=7% Similarity=0.012 Sum_probs=67.4
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEE------EEEcCCCCccHHHHH
Q 003115 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVY 191 (846)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~------vkvD~ee~p~~~~~y 191 (846)
.+.++.++|..+.+. ||..+|.|.|+||..|+. +.|-+.++=.++|.. +-||.++.+.....|
T Consensus 44 ~~~~~y~~~~~~~l~-----GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~f 112 (184)
T TIGR01626 44 GKDTVYQPWGSAELA-----GKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMF 112 (184)
T ss_pred CCcccceeccHHHcC-----CCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHH
Confidence 377888899655553 999999999999999987 446666665567777 777776654332223
Q ss_pred HH---------------------HHHHhcCCCCCCcE-EEECCCCceecc-ccccCC
Q 003115 192 MT---------------------YVQALYGGGGWPLS-VFLSPDLKPLMG-GTYFPP 225 (846)
Q Consensus 192 ~~---------------------~~~~~~g~~G~P~~-v~l~pdg~~~~~-~tY~p~ 225 (846)
.+ ......|..|.|.+ +|+|++|++.+. .|++++
T Consensus 113 Vk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 113 VKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred HHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 11 11223467788888 799999998875 345544
No 106
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.56 E-value=0.00017 Score=60.90 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=44.2
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+..|+++||++|+.++. .+ .++++ .+.++...++|.++.+++.+.| |+.+.|+++| +|+.++.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~~l~~~~--------~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFPDLADEY--------GVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCHhHHHHc--------CCcccCEEEE---CCEEEEe
Confidence 34589999999999975 33 23333 2345777888988887766555 7889999876 4566654
No 107
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.55 E-value=0.012 Score=66.83 Aligned_cols=142 Identities=8% Similarity=-0.064 Sum_probs=96.5
Q ss_pred HHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----------cCCCCCCCC
Q 003115 550 ISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAPG 617 (846)
Q Consensus 550 I~ALa~A~~v~-~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-----------~dg~~~~~~ 617 (846)
+++|+.+++.. ++ +.+++.++++.+|+..++.+...+.+.... ..+.....+
T Consensus 178 ~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 178 LALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred HHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC
Confidence 67888888866 44 679999999999998877553332222110 011112346
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHH
Q 003115 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (846)
+..+-+=.+.+++.++++++|+.+.+.|.++.+.+...... .+ ...+...--|.+=.+..|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-----------------~~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS-----------------KLISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc-----------------cCCCCCcCccHHHHHHHH
Confidence 66677778889999999999999999999988776533210 00 001112334556667889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003115 698 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (846)
Q Consensus 698 ~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 729 (846)
++++..|++ +++.+.++.+++.+.....+
T Consensus 303 ~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 303 YLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 999999986 78999999888887766544
No 108
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.55 E-value=0.00022 Score=74.75 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCEEEE-EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~-~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++..+..++.++||.|. |+++||++|+.|.. .+ .+++.. +.+...+++|.++.|++.+.| ++.+.|+
T Consensus 122 ~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~~--------~V~~vPt 189 (215)
T TIGR02187 122 EKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEKY--------GVMSVPK 189 (215)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHHh--------CCccCCE
Confidence 44466666678897777 89999999999883 22 223322 345666789999999888776 8889999
Q ss_pred EEEECCCCcee
Q 003115 207 SVFLSPDLKPL 217 (846)
Q Consensus 207 ~v~l~pdg~~~ 217 (846)
++|.. +|+.+
T Consensus 190 l~i~~-~~~~~ 199 (215)
T TIGR02187 190 IVINK-GVEEF 199 (215)
T ss_pred EEEec-CCEEE
Confidence 99864 55543
No 109
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.54 E-value=0.00015 Score=74.41 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=49.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH-------------HHHHhcCCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT-------------YVQALYGGG 202 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~-------------~~~~~~g~~ 202 (846)
..|||++|.|+++||+.|+.+... + .++.+..+.+++.|..| ...+. +.|.+ ......++.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~-l--~~~~~~~~~~vv~Is~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPI-I--KSIARAEETDVVMISDG--TPAEH-RRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHH-H--HHHHHhcCCcEEEEeCC--CHHHH-HHHHHhcCCCcceeechhHHHHhccCC
Confidence 468999999999999999987542 2 12333334456666533 11121 11211 111234778
Q ss_pred CCCcEEEECCCCceecc
Q 003115 203 GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~ 219 (846)
+.|+++++|++|++.+.
T Consensus 146 ~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 146 KIPYGVLLDQDGKIRAK 162 (189)
T ss_pred ccceEEEECCCCeEEEc
Confidence 89999999999999875
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.00019 Score=91.37 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=59.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEc-----CCCCcc-HHHHHHH-------------HHH
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVD-----REERPD-VDKVYMT-------------YVQ 196 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD-----~ee~p~-~~~~y~~-------------~~~ 196 (846)
.||+|+|+|+++||+.|+.+.. .+ .++.+..++ .|+.|-|. .++.++ +.+...+ ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P-~L--~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLP-DL--EFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhH-HH--HHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 5999999999999999997543 22 233333332 36666653 222111 1111100 011
Q ss_pred HhcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHHHHHHH
Q 003115 197 ALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWDK 247 (846)
Q Consensus 197 ~~~g~~G~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (846)
...++.|+|+++|++++|+++... +... .+.+.++++.+...|.+
T Consensus 496 ~~~~V~~iPt~ilid~~G~iv~~~~G~~~------~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 496 RELGVSSWPTFAVVSPNGKLIAQLSGEGH------RKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HhcCCCccceEEEECCCCeEEEEEecccC------HHHHHHHHHHHHHhhcc
Confidence 124788999999999999988642 1122 12456666666655553
No 111
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.49 E-value=0.0062 Score=76.09 Aligned_cols=252 Identities=20% Similarity=0.284 Sum_probs=150.1
Q ss_pred EcCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCCccccccc
Q 003115 365 SVDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGAT 438 (846)
Q Consensus 365 svD~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~-----~Ggfysa~DADs~~~~~~~ 438 (846)
..+..|.+-.-.=.||+ -|-++.+|+..|++++++.|.+.|+++++.+...+... +-|+|+
T Consensus 475 ~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~------------- 541 (825)
T cd04792 475 SDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS------------- 541 (825)
T ss_pred cCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe-------------
Confidence 44556766556678888 89999999999999999999999999999988766432 122332
Q ss_pred cccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHH
Q 003115 439 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 518 (846)
Q Consensus 439 ~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l 518 (846)
|..|-.|+ ...+...+++ +++.+.+
T Consensus 542 -G~aGi~~~--L~~l~~~~~~----------------------------------------------------~~~~~~a 566 (825)
T cd04792 542 -GLGGILYA--LTHLGKLLKD----------------------------------------------------DRLLNLA 566 (825)
T ss_pred -chhHHHHH--HHHHHHHcCC----------------------------------------------------HHHHHHH
Confidence 22222211 1111111110 1111222
Q ss_pred HHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003115 519 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 598 (846)
Q Consensus 519 ~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d 598 (846)
....+.+.+.-. .....| ++.++-| .+.+|...++.+++ +.+++.|.++++++.+....
T Consensus 567 ~~~~~~l~~~~~--~~~~~D--~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 567 KEILDLIDELIE--KDEKLD--FISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHhhc--cccCCC--EeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhh
Confidence 222222221111 111122 3344444 35677788888876 78999999999999876543
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccc
Q 003115 599 EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 678 (846)
Q Consensus 599 ~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~ 678 (846)
.+.+ .. ..+.....++..+.+=.+.+|+.+|++|+|++|++.|.++.+.....| +++.+.|.. .....
T Consensus 626 ~~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~~--~~~~~----- 693 (825)
T cd04792 626 EDGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWPR--KDGNS----- 693 (825)
T ss_pred ccCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCCC--cCcCC-----
Confidence 2222 22 122234458888899999999999999999999999999998776655 333333431 10000
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 003115 679 KEDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 723 (846)
Q Consensus 679 k~~~D~a~PS~Nsv~a~~L~rL~~l--t~~~~~~~y~~~A~~~l~~~ 723 (846)
....--.|.+=.+..+++++.+ .++ +.+.+.+++++...
T Consensus 694 ---~~~~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 694 ---FSAAWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred ---CCCcccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 0011122444455677778887 342 66777776666554
No 112
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.49 E-value=0.00026 Score=64.10 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=55.7
Q ss_pred HHHHhcCCCEEEE-EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 132 AEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 132 ~~Ak~e~KpI~l~-~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
+++++-++||=|. |+++||+||..+..-. .++++. +.++-..++|+++.|++.+.| |+.+.|++++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~~-~~~i~~~~vd~~~~~e~a~~~--------~V~~vPt~vi- 71 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAVL-NPNIEHEMIDGALFQDEVEER--------GIMSVPAIFL- 71 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHHH-CCCceEEEEEhHhCHHHHHHc--------CCccCCEEEE-
Confidence 4455778886555 6889999999987633 566643 446778888988888888777 8889999986
Q ss_pred CCCCceeccc
Q 003115 211 SPDLKPLMGG 220 (846)
Q Consensus 211 ~pdg~~~~~~ 220 (846)
||+.++.|
T Consensus 72 --dG~~~~~G 79 (89)
T cd03026 72 --NGELFGFG 79 (89)
T ss_pred --CCEEEEeC
Confidence 78877653
No 113
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.018 Score=63.20 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=101.7
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCcc
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFLD 620 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~le 620 (846)
++.+-| ++.+|...++.+++ +.+.+.+.++++++.+......++ ..+. .........++..
T Consensus 98 ~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~~H 159 (343)
T cd04434 98 LSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGK-IRWPMYFPEGRVNLGLAH 159 (343)
T ss_pred eechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCC-CceeeeccCCccccchhh
Confidence 344444 35667777877765 678999999999998876543332 2221 1111223457888
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHH
Q 003115 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (846)
Q Consensus 621 DyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (846)
+.+=.+.+|+.+++.+.++.+.+.++.+.......+ +.+++.+....... .......---|.+=++..++++
T Consensus 160 G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~ 231 (343)
T cd04434 160 GLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLA 231 (343)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHH
Confidence 888899999999999988888888888887766555 44444443211100 0111122334556677788899
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003115 701 ASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 701 ~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 728 (846)
+..+++ +.+.+.+++++........
T Consensus 232 ~~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 232 YKALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 999885 6788888888777655543
No 114
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.47 E-value=0.00026 Score=67.50 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC-----CCccHHHHHHHH---------
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-----ERPDVDKVYMTY--------- 194 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e-----e~p~~~~~y~~~--------- 194 (846)
.+..+.-.||+++|.|+++||+.|+..... + .++.+.+. +.+..|-|..+ ..++..+.|.+.
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~-l--~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTLPY-L--TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 344444578999999999999999976431 1 12333333 24555555432 223222222111
Q ss_pred -----HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 -----VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 -----~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....+..++|+++|+|++|++++.
T Consensus 92 D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 92 DNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 1112367789999999999998864
No 115
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.41 E-value=0.0018 Score=76.82 Aligned_cols=134 Identities=19% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC----
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF---- 618 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~----~~~~~~---- 618 (846)
+-.++|++.++..++| +++.+.+.++.+.|.+...+ +| ++..+.... ....+-
T Consensus 63 g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~he 123 (520)
T PF07944_consen 63 GKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMHE 123 (520)
T ss_pred HHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCccc
Confidence 7889999999999998 78999999999999887643 34 555543332 122333
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHH
Q 003115 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE---LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 695 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~---~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~ 695 (846)
++....++.||++.|++||+++.|+.|.++++.+.+ .|-+ +.+. ..-.| +...+..
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~~-------------------~~~~~-~~~~i~~ 182 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPGQ-------------------KMGYP-EHGGINE 182 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHhh-------------------ccccc-ccchHHH
Confidence 566788999999999999999999999999999833 3311 1000 00112 2234558
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003115 696 NLVRLASIVAGSKSDYYRQNAEHSLAVF 723 (846)
Q Consensus 696 ~L~rL~~lt~~~~~~~y~~~A~~~l~~~ 723 (846)
.|.+||++||+ ++|++.|+..++..
T Consensus 183 ~l~~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 183 ALVRLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHh
Confidence 99999999996 89999998777654
No 116
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.39 E-value=0.00026 Score=74.12 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred hcCCCEEEEEe--ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 136 KRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 136 ~e~KpI~l~~g--~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
+.++.|++.+. ++||++|+.|.. ++ .++++...+ .++.|++|.++.|++.+.| ++.+.|+.+|+..
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p-~l--~~la~~~~~~~i~~v~vd~~~~~~l~~~~--------~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQ-LL--EELSEVSPKLKLEIYDFDTPEDKEEAEKY--------GVERVPTTIILEE 86 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHH-HH--HHHHhhCCCceEEEEecCCcccHHHHHHc--------CCCccCEEEEEeC
Confidence 34566555444 499999999986 33 345554443 3677888888899988877 8889999999874
Q ss_pred CCcee
Q 003115 213 DLKPL 217 (846)
Q Consensus 213 dg~~~ 217 (846)
|+.+
T Consensus 87 -g~~~ 90 (215)
T TIGR02187 87 -GKDG 90 (215)
T ss_pred -Ceee
Confidence 5543
No 117
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.30 E-value=0.00065 Score=66.06 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=51.8
Q ss_pred HHHhcCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHH-------------HHH
Q 003115 133 EARKRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTY-------------VQA 197 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~~-------------~~~ 197 (846)
.+.-.||+++|.|+++ ||+.|+.... .=.++.+.. ++.+..|-|..+..+.+.+...+. +..
T Consensus 23 l~~~~gk~~vv~f~~~~~Cp~C~~~~p---~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 23 LSDFKGKPVVVNFWASAWCPPCRKELP---YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHH---HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred HHHhCCCeEEEEEEccCCCCcchhhhh---hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 3446799999999999 9999998654 222333332 333444444444333333222111 111
Q ss_pred hcCCC---------CCCcEEEECCCCceeccc
Q 003115 198 LYGGG---------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 198 ~~g~~---------G~P~~v~l~pdg~~~~~~ 220 (846)
..+.. ++|+++|+|++|++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 100 ALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 12544 899999999999999864
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.26 E-value=0.00054 Score=78.87 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=53.4
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
...+|+|+|.|+++||+.|+.|... | .++++.++. .+..+++|.+... +.. | +..++|+.+|+.
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~--------~i~~~Pt~~~~~ 427 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATAND-VPP-F--------EVEGFPTIKFVP 427 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc-cCC-C--------CccccCEEEEEe
Confidence 4578999999999999999999874 3 557777776 6889999988653 222 3 567999999997
Q ss_pred CCCc
Q 003115 212 PDLK 215 (846)
Q Consensus 212 pdg~ 215 (846)
++++
T Consensus 428 ~~~~ 431 (462)
T TIGR01130 428 AGKK 431 (462)
T ss_pred CCCC
Confidence 6654
No 119
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.039 Score=63.47 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCC--CcEEEE-EcCCCCC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRY-SVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 407 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vg--GGF~RY-svD~~W~---vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~ 407 (846)
++...+-+..+.+.+++ +.|..| ||+++- --..+|. .-|| ||-=+-|+.....+|++||+...++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 57777888888888877 778765 676652 2355675 3455 99999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCC
Q 003115 408 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 487 (846)
Q Consensus 408 t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~ 487 (846)
-.+|+.+-+ .|+- .. ..|.+
T Consensus 159 lADhi~tvf-gp~~--------------~q----------------------------------~~g~~----------- 178 (589)
T COG3533 159 LADHIATVF-GPEE--------------DQ----------------------------------VPGYC----------- 178 (589)
T ss_pred HHHhhhhhc-Cccc--------------cc----------------------------------ccccc-----------
Confidence 999988755 2110 00 01111
Q ss_pred CCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhh
Q 003115 488 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESA 567 (846)
Q Consensus 488 feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~ 567 (846)
..+=+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------------gH~eielAl~~Ly~~Tg~----- 196 (589)
T COG3533 179 ---------------------------------------------------------GHPEIELALAELYRLTGD----- 196 (589)
T ss_pred ---------------------------------------------------------CCCchhHHHHHHHHHhcC-----
Confidence 112334588999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003115 568 MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 568 ~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~ 647 (846)
++||+.|+...+. ...+| +. .+|.-...+..--..+++.|+.+||+.+||+.+...+..
T Consensus 197 -----------~rYL~LA~~Fi~~---rg~~P-----~~--~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 197 -----------QRYLDLARRFIHQ---RGVEP-----LA--QRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred -----------hHHHHHHHHHHHH---hccCh-----hh--cCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 8999999876543 22222 11 112112245556678999999999999999999999999
Q ss_pred HHHHHHHH
Q 003115 648 LQNTQDEL 655 (846)
Q Consensus 648 L~~~~~~~ 655 (846)
+++.+.++
T Consensus 256 lW~~~t~k 263 (589)
T COG3533 256 LWQNVTTR 263 (589)
T ss_pred HHHHhhhh
Confidence 99887654
No 120
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.11 E-value=0.011 Score=60.78 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 380 YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 380 yDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
..|++.+.++++||++|+|+.|+++|+++++.+.-. ..+||+-+
T Consensus 30 maQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~ 73 (189)
T PF06662_consen 30 MAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeE
Confidence 469999999999999999999999999999987753 23588765
No 121
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.00 E-value=0.017 Score=63.75 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (846)
++|++.|+++++++..+. ..+.|+|.|... -+ ....+|.--....-++.+.+.+++++|.+.+..-+....++..|
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~--~p-~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~D 173 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVK--YP-HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRD 173 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccC--ch-hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccC
Confidence 899999999999999888 445688998643 11 12223333334455678899999999999999999999999999
Q ss_pred cCCCcccccCCCCCcccccccCCCCCCCC----ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhH
Q 003115 659 REGGGYFNTTGEDPSVLLRVKEDHDGAEP----SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAV 734 (846)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~~D~a~P----S~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~ 734 (846)
+++|-||-.=..+.. .++....-+- | -+|+=.+.+|..+=.+...+ ++ -+....++++.....|.++-...
T Consensus 174 p~TGL~YH~wd~~~~--~~w~~~~sG~-~~fWaRg~gW~~mal~d~le~lp~~-~~-~r~~l~~~l~d~v~al~r~Qde~ 248 (357)
T COG4225 174 PETGLYYHGWDEDGT--MPWANNESGE-PAFWARGNGWYAMALADLLELLPED-HP-DRRELLNVLRDLVDALIRYQDES 248 (357)
T ss_pred CCcCceEEeeccCCC--CccccccCCC-ceeeecccchHHHHHHHHHHhCCCC-Cc-hHHHHHHHHHHHHHHHHHhhccc
Confidence 999988832222211 1121211221 2 25666677777776676643 23 34445555555555555554444
Q ss_pred HHHHH
Q 003115 735 PLMCC 739 (846)
Q Consensus 735 ~~~~~ 739 (846)
..|..
T Consensus 249 GlW~t 253 (357)
T COG4225 249 GLWHT 253 (357)
T ss_pred cchhh
Confidence 33333
No 122
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.98 E-value=0.0071 Score=60.71 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=50.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cC--eEEEEEcCC-----CCccHHHHHHHH--------------
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDRE-----ERPDVDKVYMTY-------------- 194 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~--FV~vkvD~e-----e~p~~~~~y~~~-------------- 194 (846)
.+|+++|.|+++||+.|..+..+ + .++.+.+. ++ ||.|.+|.. +.++..+.|.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~-l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDR-L--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHH-H--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 58999999999999999865432 2 23444443 33 555555542 123322333211
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
.....+..++|.++++|++|++++.+
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEee
Confidence 11224677899999999999998764
No 123
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.97 E-value=0.0046 Score=60.42 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=68.6
Q ss_pred hHHHHHHH----HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH---------H
Q 003115 127 GEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM---------T 193 (846)
Q Consensus 127 ~~eAl~~A----k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~---------~ 193 (846)
+++|++.| |+|.|+++|+.+.+-=.-|...=++++.+++|.+++|+|||.-=-|++.. +..+.+. .
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~-~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKE-SNKARFLSSCTRHFGSV 84 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccch-hhhhHHHHhhhhhhhHH
Confidence 58999999 99999999999999988888888889999999999999999999998743 2211111 1
Q ss_pred HHHHhc--CCCCCCcEEEECCCCc
Q 003115 194 YVQALY--GGGGWPLSVFLSPDLK 215 (846)
Q Consensus 194 ~~~~~~--g~~G~P~~v~l~pdg~ 215 (846)
+.|.+. ...-+|...++.+..+
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~ 108 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRS 108 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCC
Confidence 222222 3568999999987654
No 124
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.96 E-value=0.0015 Score=62.13 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCEEEEEec--cCCh---hhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-----CCccHHHHHHHHHHH
Q 003115 128 EEAFAEARKRDVPIFLSIGY--STCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMTYVQA 197 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~--~wC~---wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-----e~p~~~~~y~~~~~~ 197 (846)
+.-|...-++++.+||.|++ +||. -|+.+..+..+.. ...+..+||.+ +..++.+.|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~~~~~~~L~~~y------ 74 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYGEKLNMELGERY------ 74 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEecccccchhhHHHHHHh------
Confidence 45677788899999999999 7777 7777764333211 13778899994 345566665
Q ss_pred hcCCC--CCCcEEEECCC
Q 003115 198 LYGGG--GWPLSVFLSPD 213 (846)
Q Consensus 198 ~~g~~--G~P~~v~l~pd 213 (846)
++. |+||+.|+...
T Consensus 75 --~I~~~gyPTl~lF~~g 90 (116)
T cd03007 75 --KLDKESYPVIYLFHGG 90 (116)
T ss_pred --CCCcCCCCEEEEEeCC
Confidence 888 99999888754
No 125
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.92 E-value=0.0028 Score=62.96 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCC-ccHHHHHHH-----------
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMT----------- 193 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~-p~~~~~y~~----------- 193 (846)
+......=+||-|.++|.+.||+.|+.+- -.=.++-+.+.++ |-.|-|++|.. .+.+ .||.
T Consensus 24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~FT---P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~-~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 24 EVLASEALQGKVVGLYFSAHWCPPCRDFT---PILKDFYEELKDNAAPFEVVFVSSDRDEESLD-EYMLEHHGDWLAIPF 99 (157)
T ss_pred cchHhHhhCCcEEEEEEEEEECCchhhCC---chHHHHHHHHHhcCCceEEEEEecCCCHHHHH-HHHHhcCCCeEEecC
Confidence 44455455689999999999999999864 2445566666667 88888877643 2333 2322
Q ss_pred ------HHHHhcCCCCCCcEEEECCCCceecc
Q 003115 194 ------YVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 194 ------~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
-++...++.+.|..+++.|||..+..
T Consensus 100 ~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred CCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 12334688999999999999998863
No 126
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.88 E-value=0.0014 Score=51.76 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=46.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
++.|+.+||++|+.+.. .+.+- +..+.++..+.+|.++.++.... ....+..+.|++++.+++
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 46789999999999976 33322 46677899999999877665432 112367789999999887
No 127
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.87 E-value=0.0074 Score=64.38 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=19.8
Q ss_pred HHHHhcCCCEEEEEeccCChhhhh
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHV 155 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~ 155 (846)
..+.-.||+|+|.|+++||++|..
T Consensus 93 sLsd~kGK~vvl~FwAswCp~c~~ 116 (236)
T PLN02399 93 ALSKFKGKVLLIVNVASKCGLTSS 116 (236)
T ss_pred eHHHhCCCeEEEEEEcCCCcchHH
Confidence 334446899999999999999976
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=96.76 E-value=0.0028 Score=66.07 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=52.0
Q ss_pred HHHHHHHHhcC-CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~-KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+-+++..+.+ ..+++.|+++||+.|+.|.. ++ +++++-. .++..++||++ | ++.+.|+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl--~~l~~~~-~~~~F~~V~~d--------~--------~V~~vPt 65 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VC--NALVEDF-PSLEFYVVNLA--------D--------ANNEYGV 65 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HH--HHHHHHC-CCcEEEEEccc--------c--------CcccceE
Confidence 45556665544 77899999999999999985 33 2333322 36888888887 3 7789999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+. +|+.+-.
T Consensus 66 fv~~~-~g~~i~r 77 (204)
T PTZ00062 66 FEFYQ-NSQLINS 77 (204)
T ss_pred EEEEE-CCEEEee
Confidence 99996 7777754
No 129
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.75 E-value=0.0028 Score=64.80 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=41.8
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCc-----cH-HHHHHHHHHHhcCC--CCCCcEEEECC
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP-----DV-DKVYMTYVQALYGG--GGWPLSVFLSP 212 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p-----~~-~~~y~~~~~~~~g~--~G~P~~v~l~p 212 (846)
+|.|+++||++|+... |.+.++-++ .|..+-|..++.+ .+ +.. ........|. .++|+++|+|+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeC
Confidence 6669999999999965 455555444 3544444444332 11 100 0111112242 69999999999
Q ss_pred CCceec
Q 003115 213 DLKPLM 218 (846)
Q Consensus 213 dg~~~~ 218 (846)
+|+.++
T Consensus 146 ~G~i~~ 151 (181)
T PRK13728 146 NTLEAL 151 (181)
T ss_pred CCcEEE
Confidence 998753
No 130
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.72 E-value=0.11 Score=58.37 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHHH
Q 003115 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLISG 628 (846)
Q Consensus 550 I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~~~~~leDyA~~i~a 628 (846)
+.+|..++..+++ +++.+.+.++.+++.+.. .+ .|.+.....+. ......+..+-+=.+..
T Consensus 171 ~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~~ 232 (343)
T cd04794 171 LYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-FP-SGNFPSSLGNRKRDRLVQWCHGAPGIVYL 232 (343)
T ss_pred HHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-cc-CCCCCCccCCCCCCccccccCCCchHHHH
Confidence 6678888888766 689999999999998763 32 34332211111 11112334444456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 003115 629 LLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 629 Ll~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~ 708 (846)
++.++++++|+++.+.|+...+.+.+. | +... +..+ ..+ -+|| +..|++++.+|++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~---~~~l-------CHG--~~G~---~~~lL~~~~~~~~-- 288 (343)
T cd04794 233 LAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLKK---GPGL-------CHG--IAGN---AYAFLLLYRLTGD-- 288 (343)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh------C-CccC---CCcc-------ccC--ccch---HHHHHHHHHHhCc--
Confidence 999999999999999998887765421 1 0000 0000 001 1343 5788899999986
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 003115 709 SDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 709 ~~~y~~~A~~~l~~~~~~i~ 728 (846)
++|.++|....+.+.....
T Consensus 289 -~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 -LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred -HHHHHHHHHHHHHHhcchh
Confidence 7899999988887766544
No 131
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.71 E-value=0.0062 Score=58.51 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=48.0
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~--------------~~~~~g 200 (846)
.||+++|.|+ +.||++|..+-. .++ ++.+.+. +++..|-|..+. ++..+.|.+. .....|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~-~l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEAC-DFR--DLYEEFKALGAVVIGVSPDS-VESHAKFAEKYGLPFPLLSDPDGKLAKAYG 97 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 4899999998 689999998654 222 2333333 334444444332 2222222211 111124
Q ss_pred CCCC---------CcEEEECCCCceeccc-cccCC
Q 003115 201 GGGW---------PLSVFLSPDLKPLMGG-TYFPP 225 (846)
Q Consensus 201 ~~G~---------P~~v~l~pdg~~~~~~-tY~p~ 225 (846)
...+ |+++++|++|++.+.- ++.+.
T Consensus 98 v~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~ 132 (140)
T cd03017 98 VWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPK 132 (140)
T ss_pred CccccccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence 4444 8999999999988753 34443
No 132
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.072 Score=61.37 Aligned_cols=125 Identities=20% Similarity=0.219 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
+-+|.|+..+++++|. ...|+.+.+++++|..-|- +..+.. ....+ +-.+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvfg-p~~~q~--------~g~~g----H~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVFG-PEEDQV--------PGYCG----HPEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhcC-cccccc--------ccccC----CCchh
Confidence 6678999999999997 6899999999999988773 332211 11112 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHH----HHHHHHHHHH
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 702 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv----~a~~L~rL~~ 702 (846)
.||.+||++||+++||+.|+.....-- .++ +. -|-.+. + .+.++ ....+.+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~rg---~~P-----~~---------~rg~e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQRG---VEP-----LA---------QRGDEL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhc---cCh-----hh---------cCchhh-h----hhhHHHHHHHhhhHHHHHH
Confidence 799999999999999999975543211 111 10 011111 1 23333 3444668999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHH
Q 003115 703 IVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 703 lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
++|+ +.++..++.+.+.+..
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t~ 262 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVTT 262 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhhh
Confidence 9986 7788888877776543
No 133
>PLN03009 cellulase
Probab=96.66 E-value=0.046 Score=64.33 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC-Ccc---hH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG-FLD---DY 622 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~-~le---Dy 622 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+ ....+......+ +.+ ..
T Consensus 176 ~~~AAalA~as~vfk~~--D~~Y--------A~~ll~~Ak~ly~~a~~~~-----g~y-~~~~~~~~g~~~~Y~~~s~~~ 239 (495)
T PLN03009 176 GETAAALAASSMAFRSS--DPGY--------SETLLRNAIKTFQFADMYR-----GAY-SDNDDIKDGVCPFYCDFDGYQ 239 (495)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CCc-cCCccccCccccCcCCccccc
Confidence 77889999999999862 1222 1467999999999987641 222 111000001111 111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L 648 (846)
=.+++|.+.||.+|||..|++.+...
T Consensus 240 DE~~WAAawLy~aTgd~~Yl~~~~~~ 265 (495)
T PLN03009 240 DELLWGAAWLRRASGDDSYLNYIENN 265 (495)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 45688999999999999999988654
No 134
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=96.64 E-value=0.011 Score=68.53 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC---CCcch
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP---GFLDD 621 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~---~~leD 621 (846)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++-. .+. ........ .-...
T Consensus 155 ~~~~~AAalA~As~v~k~~--d~~~--------A~~~L~~A~~~~~~a~~~~~-----~~~---~~~~~~~~~~Y~~~~~ 216 (444)
T PF00759_consen 155 ATAEFAAALAAASRVFKDF--DPAY--------AAQCLKAAKEAYAFAKKNPG-----VYS---DNPQPNGGGFYNSSGY 216 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTT--THHH--------HHHHHHHHHHHHHHHHHSTT-----HGG---GTSTCTTTTTSHCS-S
T ss_pred HHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCCC-----ccc---CCcccccCCcccCCCc
Confidence 3578899999999999862 1122 25789999999999887541 110 11101111 11223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 652 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~ 652 (846)
.-.++.|.++||++||+.+|++.|.+....+
T Consensus 217 ~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 217 EDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 3457889999999999999999998776443
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.63 E-value=0.0093 Score=58.69 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=46.3
Q ss_pred cCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003115 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (846)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~--------------~~~~~g 200 (846)
.+|+++|.|++. ||.+|...-. .+ .++++.++ +++..|-|..+....+ +.|.+. +....|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~-~l--~~~~~~~~~~~v~vi~Is~d~~~~~-~~~~~~~~~~~~~l~D~~~~~~~~~g 104 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC-GL--RDNMDELKKAGVVVLGISTDKPEKL-SRFAEKELLNFTLLSDEDHQVAEQFG 104 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHhCCCCeEEECCCchHHHHhC
Confidence 479999999875 7889987543 22 22333343 3455555544432222 222211 001113
Q ss_pred CCC------------CCcEEEECCCCceeccc-cccCCC
Q 003115 201 GGG------------WPLSVFLSPDLKPLMGG-TYFPPE 226 (846)
Q Consensus 201 ~~G------------~P~~v~l~pdg~~~~~~-tY~p~~ 226 (846)
..+ .|+++++|++|++...- +|.|++
T Consensus 105 v~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 105 VWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSN 143 (154)
T ss_pred CCcccccccccccCcceEEEEECCCCEEEEEEcCCCcch
Confidence 221 37889999999988753 355543
No 136
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.62 E-value=0.13 Score=60.83 Aligned_cols=291 Identities=17% Similarity=0.182 Sum_probs=160.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecH
Q 003115 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (846)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~ 450 (846)
.|+-||-.. ++|..+.-||.+++++.|++.|.+..+-|+.-+-.|.|==|..++-... .. ...-|.
T Consensus 150 ~vsvFEttI----R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--------~~-~~~~~~- 215 (522)
T PTZ00470 150 GVSVFETTI----RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--------RK-SYPGWA- 215 (522)
T ss_pred eeeeeeeeh----hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--------CC-CCcccC-
Confidence 467788554 5888889999999999999999999999998886666644443332110 00 000110
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc-hHHHHHcCCC-HHHHHHHHHHHHHHHHhh
Q 003115 451 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLFDV 528 (846)
Q Consensus 451 ~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~-~~~a~~~g~~-~~~l~~~l~~~r~~L~~~ 528 (846)
.+...+.-..+. -|+..+..++ .++..+..+.+.+.|.+.
T Consensus 216 --------------------------------------~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 216 --------------------------------------GGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSM 257 (522)
T ss_pred --------------------------------------CCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 000011111110 0222222332 244556667777777765
Q ss_pred hcCCC--CC-CCCch------hhhchHHHHH---HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003115 529 RSKRP--RP-HLDDK------VIVSWNGLVI---SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 596 (846)
Q Consensus 529 R~~R~--~P-~~DdK------ilt~WNglmI---~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l 596 (846)
|...+ -| ++|.. -..+|-|+.- .=|.+.+..++.. .+.|.++-.++++-+.+++
T Consensus 258 ~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i~~~l 323 (522)
T PTZ00470 258 KPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGIIEHL 323 (522)
T ss_pred CCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHHHHHh
Confidence 43210 01 11111 0011222221 2466777777531 2678888888888888876
Q ss_pred ccc-CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHccccCCCc----c
Q 003115 597 YDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG----Y 664 (846)
Q Consensus 597 ~d~-~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----y 664 (846)
... .++-.+....+|.. .....+--+.++-|++.|.-. ..+.+|++.|++|.+.+...+....+|- |
T Consensus 324 ~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~~ 402 (522)
T PTZ00470 324 YKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIF 402 (522)
T ss_pred cccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCceE
Confidence 432 12333332222221 222233445666777777642 2356899999999999988775444442 2
Q ss_pred cccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 003115 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 737 (846)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~ 737 (846)
...... .... ....|...+= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.|++.+
T Consensus 403 ~~~~~~-~~~~---~~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 403 HFDPNS-GDIS---PNVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred EeccCc-cccc---cccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 221110 0000 0011111110 12688899999999996 899999999999987655 456676653
No 137
>PLN02340 endoglucanase
Probab=96.49 E-value=0.04 Score=66.27 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 624 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA~ 624 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+..+...+.. ...++- =.
T Consensus 179 ~e~AAAlAaas~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~s~~~a~~~Y~ss~~~---DE 240 (614)
T PLN02340 179 GETAAALAAASKAFKPY--NSSY--------SDLLLVHAKQLFSFADKFR-----GLYDDSIQNAKKFYTSSGYS---DE 240 (614)
T ss_pred HHHHHHHHHHHHhccCC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCccCCCCccccCCCCCCcc---hH
Confidence 78889999999999862 1222 2568999999999987642 211100011111 011222 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003115 625 LISGLLDLYEFGSGTKWLVWAIELQN 650 (846)
Q Consensus 625 ~i~aLl~LYe~Tgd~~yL~~A~~L~~ 650 (846)
+++|...||.+|||..|++.+.....
T Consensus 241 l~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 241 LLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 68899999999999999999887644
No 138
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.48 E-value=0.91 Score=56.99 Aligned_cols=138 Identities=13% Similarity=0.078 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
+=++++|+++++++++ ++|++.|.++.++....+.. +.+... ..++.....++..+.+=.+
T Consensus 646 sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~-~~~~w~--~~~~~~~~~~WChG~~GI~ 706 (825)
T cd04792 646 SGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSE-EGWNWP--RKDGNSFSAAWCHGAPGIL 706 (825)
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCH-hhcCCC--CcCcCCCCCcccCCcHHHH
Confidence 3347899999999987 78999999999987665533 211111 1111222346666777788
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHh
Q 003115 627 SGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 704 (846)
Q Consensus 627 ~aLl~LYe~--Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt 704 (846)
.+++.++++ ..++.+.+.+..+.+.+..... .. + ...--|++=.+..|+.+++.+
T Consensus 707 lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~--------~~---~------------~slCHG~~Gil~~ll~~~~~~ 763 (825)
T cd04792 707 LARLELLKFNDLDDEELKEEIEIALKTTLKEGF--------GN---N------------HSLCHGDLGNLEILLYAAKAF 763 (825)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC--------CC---C------------CeecCCCcchHHHHHHHHHhc
Confidence 899999999 6788888888877776654321 00 0 011123333456788889998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Q 003115 705 AGSKSDYYRQNAEHSLAVFETRLKD 729 (846)
Q Consensus 705 ~~~~~~~y~~~A~~~l~~~~~~i~~ 729 (846)
++ ++|.+.++.+...+.....+
T Consensus 764 ~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 764 GD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred CC---HHHHHHHHHHHHHHHHHHHh
Confidence 85 78899888877766555543
No 139
>PLN02345 endoglucanase
Probab=96.47 E-value=0.051 Score=63.48 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 624 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA~ 624 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+..+..++.. ...++-| .
T Consensus 145 ~~~AAAlA~as~vfk~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D---E 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSS--DSTY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD---E 206 (469)
T ss_pred HHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---H
Confidence 77889999999999862 1122 1568999999999988752 111111000000 0112223 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003115 625 LISGLLDLYEFGSGTKWLVWAI 646 (846)
Q Consensus 625 ~i~aLl~LYe~Tgd~~yL~~A~ 646 (846)
+++|.+.||.+|||..|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6889999999999999999875
No 140
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.46 E-value=0.14 Score=56.99 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 380 YDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 380 yDNA~Ll~~ya~Ay~~t~--~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
.+.|..+.++..+....+ ++.+.+.++++++||++ .+.++|||..
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 378999999998888763 57789999999999997 4778999864
No 141
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.44 E-value=0.009 Score=62.07 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=17.7
Q ss_pred cCCCEEEEEeccCChhhhh
Q 003115 137 RDVPIFLSIGYSTCHWCHV 155 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~ 155 (846)
.||+|+|.|.++||++|..
T Consensus 38 kGkvvlv~fwAswC~~C~~ 56 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKK 56 (199)
T ss_pred CCCEEEEEEECCCCCChHH
Confidence 5899999999999999985
No 142
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0051 Score=70.10 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=60.6
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
......+++.+|.|+++||..|+.+.. +|. +++..+...-....||.++.+++-+.| ++.|+|+.+++.
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~~~~~~~~vd~~~~~~~~~~y--------~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALKGKVKIGAVDCDEHKDLCEKY--------GIQGFPTLKVFR 109 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhcCceEEEEeCchhhHHHHHhc--------CCccCcEEEEEc
Confidence 345577899999999999999999997 444 777888764555678999888887777 899999999999
Q ss_pred CCCcee
Q 003115 212 PDLKPL 217 (846)
Q Consensus 212 pdg~~~ 217 (846)
|+.+++
T Consensus 110 ~~~~~~ 115 (383)
T KOG0191|consen 110 PGKKPI 115 (383)
T ss_pred CCCcee
Confidence 993333
No 143
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.39 E-value=0.26 Score=60.35 Aligned_cols=224 Identities=20% Similarity=0.199 Sum_probs=141.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEE----EEcC-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHR----YSVD-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRD 407 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~R----YsvD-~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~~~~y~~~A~~ 407 (846)
++....+|..--+.|+..+|.-...+-..+ +..+ ..|.+------||| -|-++-.|+-...+||+..|+++|.+
T Consensus 595 ~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~ 674 (963)
T COG4403 595 NEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIK 674 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHH
Confidence 345556666666666666665544333333 2223 67877555667888 88899999999999999999999999
Q ss_pred HHHHHHHhccCCC-----CceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCC
Q 003115 408 ILDYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMS 482 (846)
Q Consensus 408 t~~fl~r~m~~~~-----Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~ 482 (846)
++.=+.+.+.... |||. |--|-|| ..--|.+.+++
T Consensus 675 ~L~~~~~sv~~~~~~~~iga~~---------------G~~g~~y--al~~I~~~~~~----------------------- 714 (963)
T COG4403 675 ALQDSRKSVNNNLNPINIGAFT---------------GLSGYFY--ALWKIYSVTRD----------------------- 714 (963)
T ss_pred HHHHHHHhhhhccCCccccccc---------------ccchhhh--hhHHHHHhccc-----------------------
Confidence 9998888765422 3332 1223333 22222222221
Q ss_pred CCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH--HHHHHHHHHHh
Q 003115 483 DPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKIL 560 (846)
Q Consensus 483 d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglm--I~ALa~A~~v~ 560 (846)
+.|. ..+.+.+. ..+.+.+. ... | | --||++ |..|...|+.+
T Consensus 715 ---------~~l~----------------~~~~~~i~-~le~~v~~--~~~-~--d-----~i~Gl~g~i~~L~~iYk~~ 758 (963)
T COG4403 715 ---------NYLI----------------QSAENSIR-HLEILVQK--SKD-P--D-----FINGLAGVICVLVSIYKLT 758 (963)
T ss_pred ---------HHHH----------------HHHHHHHH-HHHHHHhh--ccC-c--c-----hhhccHHHHHHHHHHHhhc
Confidence 1110 00111111 11222211 111 1 1 124554 77888899987
Q ss_pred hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHH
Q 003115 561 KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTK 640 (846)
Q Consensus 561 ~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~ 640 (846)
.+ |+.++.|..+.+.+.+.....+. .+....++..+.+-.|.+|+.+|++||++.
T Consensus 759 ~e----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~ 813 (963)
T COG4403 759 DE----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEES 813 (963)
T ss_pred cc----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHH
Confidence 66 89999999999999876543221 112345777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccc
Q 003115 641 WLVWAIELQNTQDELFLD 658 (846)
Q Consensus 641 yL~~A~~L~~~~~~~F~D 658 (846)
++..+.++...-..+|-+
T Consensus 814 l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 814 LLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888777765
No 144
>PLN02171 endoglucanase
Probab=96.39 E-value=0.095 Score=63.28 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--cc---cCCCeEEEEecCCCCCCCCCcch
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YD---EQTHRLQHSFRNGPSKAPGFLDD 621 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l--~d---~~~G~l~~~~~dg~~~~~~~leD 621 (846)
+-+..|||.|++++++- +..| ..++|+.|+++.+|..++- ++ +...++|.+ ..++-
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s-------~s~y~-- 239 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRS-------VSGYG-- 239 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCC-------CCCcc--
Confidence 77889999999999862 1222 1567999999999997752 11 000112110 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~ 650 (846)
=.+++|...||.+|||..|++.+....+
T Consensus 240 -DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 240 -DELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568899999999999999998876554
No 145
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.38 E-value=0.014 Score=63.59 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 003115 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (846)
Q Consensus 549 mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~a 628 (846)
+|..|++||+|+++ ++|++.|.++++-+++.-.-+.+-++-| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G--N-----aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G--N-----AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C--c-----hhh
Confidence 57789999999997 7999999999999976432222223332 211 1 1 346
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 629 LLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 629 Ll~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
+|.||++|+|.+||.+|.+.++++.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999998764
No 146
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=96.37 E-value=1.5 Score=50.97 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCCHHH
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 641 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~-----------------~~~leDyA~~i~aLl~LYe~Tgd~~y 641 (846)
++.++.++.....-.+..||++++.|.-.+.+|+... .++.-+ ......+++.|.+++|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~-~~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPAD-PDYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE---HHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCc-hhHhHHHHHHHHcCCCHHH
Confidence 6788888888877788889999998887788875411 122222 2346699999999999998
Q ss_pred HHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 642 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 642 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
.+.+..++. +|= =|.+-......+.+ +....+....++.+++.|++.|++ +.|++.|+++-+
T Consensus 406 w~~~~~m~~----~~g---LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAH----HFG---LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHH----HTT----EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHh----hcC---cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 888877764 331 12122111111111 222334445788899999999986 899999987776
Q ss_pred HHHHHH
Q 003115 722 VFETRL 727 (846)
Q Consensus 722 ~~~~~i 727 (846)
.+..+-
T Consensus 468 ~l~~~~ 473 (557)
T PF06917_consen 468 NLFEQH 473 (557)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 147
>PLN02266 endoglucanase
Probab=96.36 E-value=0.2 Score=59.08 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-----CC---CCC
Q 003115 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-----SK---APG 617 (846)
Q Consensus 546 NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~-----~~---~~~ 617 (846)
-+-++.|||.|++++++- +..| ..++|+.|+++.+|..++= |.+ .++. +. ..+
T Consensus 192 a~e~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~fa~~~~-----g~y----~~~~~~~~~~~y~s~s~ 252 (510)
T PLN02266 192 AAETAAALAAASLVFRKS--DPTY--------SKLLVRRAIRVFQFADKYR-----GAY----SNGLKPDVCPFYCSYSG 252 (510)
T ss_pred HHHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCc----cCCCCcccCCCcccCCc
Confidence 377899999999999862 1122 2578999999999987642 111 1110 10 112
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
+.| .+++|.++||.+|||+.|++.++...
T Consensus 253 ~~D---El~WAAawLy~ATGd~~Yl~~~~~~~ 281 (510)
T PLN02266 253 YQD---ELLWGAAWLHKATKNPTYLNYIQVNG 281 (510)
T ss_pred chH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333 45678899999999999999887654
No 148
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.35 E-value=0.0027 Score=68.15 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=58.2
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE---cCCCCccHHHHHHHHHHHhcCCC
Q 003115 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv---D~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
+.++.+..-|.++ .-||+||++||..|++++. ++ .+|--.|..-=.|||| |.+.-|.+...+ |+.
T Consensus 32 DLddkFkdnkddd-iW~VdFYAPWC~HCKkLeP-iW--deVG~elkdig~PikVGKlDaT~f~aiAnef--------giq 99 (468)
T KOG4277|consen 32 DLDDKFKDNKDDD-IWFVDFYAPWCAHCKKLEP-IW--DEVGHELKDIGLPIKVGKLDATRFPAIANEF--------GIQ 99 (468)
T ss_pred hhhHHhhhcccCC-eEEEEeechhhhhcccccc-hh--HHhCcchhhcCCceeecccccccchhhHhhh--------ccC
Confidence 4455665555444 4789999999999999986 44 3555566665667765 778888888777 889
Q ss_pred CCCcEEEECCCCc
Q 003115 203 GWPLSVFLSPDLK 215 (846)
Q Consensus 203 G~P~~v~l~pdg~ 215 (846)
|+||+.|+-.+.-
T Consensus 100 GYPTIk~~kgd~a 112 (468)
T KOG4277|consen 100 GYPTIKFFKGDHA 112 (468)
T ss_pred CCceEEEecCCee
Confidence 9999999987743
No 149
>PLN02308 endoglucanase
Probab=96.33 E-value=0.16 Score=59.76 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC---CCCCCcchH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 622 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~---~~~~~leDy 622 (846)
+.++.|||.|++++++- +..| ..++|+.|+++.+|..++- |.+....... .+ ...++.
T Consensus 175 ~~~AAAlA~as~vf~~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~--- 236 (492)
T PLN02308 175 GETAAALAAASIVFRKR--DPAY--------SRLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQ--- 236 (492)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCccc---
Confidence 78899999999999851 1222 2578999999999988742 2111000000 00 001222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L 648 (846)
=.+++|...||.+|||..|++.+...
T Consensus 237 DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 237 DELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35688999999999999999977654
No 150
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.31 E-value=0.0063 Score=62.94 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=45.7
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+++|+|+|+++||+.|+.|.. .| .++++... ....||||++.- ...| +..+.|+.+|+- +|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l--~~LA~k~~-~vkFvkI~ad~~---~~~~--------~i~~lPTlliyk-~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HL--SELARKFP-DTKFVKIISTQC---IPNY--------PDKNLPTILVYR-NGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CCEEEEEEhHHh---HhhC--------CCCCCCEEEEEE-CCEEE
Confidence 469999999999999999986 33 33444432 355667777631 1222 788999988874 77776
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 166 ~~ 167 (192)
T cd02988 166 KQ 167 (192)
T ss_pred EE
Confidence 53
No 151
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0055 Score=71.19 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=70.0
Q ss_pred cccccCCChhhhhccCCCccCcc------chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--Ce
Q 003115 103 NRLAAEHSPYLLQHAHNPVDWFA------WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WF 174 (846)
Q Consensus 103 NrL~~e~SpYL~~ha~~~v~W~~------~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~F 174 (846)
..|...-+|||.- ..-|=+|.. -++---..+..++|-|||.|||+||+.|+.++. .=.++++.++. +-
T Consensus 344 ~~l~Gk~~p~~kS-qpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP---~~eeLAe~~~~~~~v 419 (493)
T KOG0190|consen 344 DFLDGKVKPHLKS-QPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAP---IYEELAEKYKDDENV 419 (493)
T ss_pred HHhcCcccccccc-CCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhh---HHHHHHHHhcCCCCc
Confidence 4577777888875 233335641 123344567899999999999999999999996 22456666654 68
Q ss_pred EEEEEcCCCC--ccHHHHHHHHHHHhcCCCCCCcEEEECCCC--cee
Q 003115 175 VSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDL--KPL 217 (846)
Q Consensus 175 V~vkvD~ee~--p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg--~~~ 217 (846)
|..|+|.+.+ |.+ ...|+||+.|.-..+ +|+
T Consensus 420 viAKmDaTaNd~~~~------------~~~~fPTI~~~pag~k~~pv 454 (493)
T KOG0190|consen 420 VIAKMDATANDVPSL------------KVDGFPTILFFPAGHKSNPV 454 (493)
T ss_pred EEEEeccccccCccc------------cccccceEEEecCCCCCCCc
Confidence 9999999754 332 345799999998776 454
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0043 Score=72.05 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.+-++..-..|.-|||.|||+||..|+.+..+- .+-|..|.+ .--..|||.++..++...| ++.|+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gy 100 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGY 100 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCC
Confidence 345677778899999999999999999998632 333455554 4567799999887777777 88999
Q ss_pred CcEEEECCC
Q 003115 205 PLSVFLSPD 213 (846)
Q Consensus 205 P~~v~l~pd 213 (846)
||.-|.-..
T Consensus 101 PTlkiFrnG 109 (493)
T KOG0190|consen 101 PTLKIFRNG 109 (493)
T ss_pred CeEEEEecC
Confidence 998765443
No 153
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.20 E-value=0.0073 Score=52.74 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+.|+++||++|+.+.+ .++.-. ++..|..+.||.++.+.. ..+++...+|..++|+.++ +|+.+.+
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~---~~~~l~~~~g~~~vP~v~i---~g~~igg 67 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSE---IQDYLEEITGQRTVPNIFI---NGKFIGG 67 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHH---HHHHHHHHhCCCCCCeEEE---CCEEEcC
Confidence 5689999999999875 332222 222377788887644322 1222334457889999753 4566543
No 154
>PLN02613 endoglucanase
Probab=96.16 E-value=0.18 Score=59.37 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcch
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDD 621 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~---~~~~~leD 621 (846)
.-+-+..|||.|++++++.+ ..| ..++|+.|+++.+|..++- |.+. +..+ ...++.|+
T Consensus 173 ~a~~~AAALAaas~vfk~~D--~~y--------A~~~L~~Ak~ly~~a~~~~-----g~y~----~~~~~y~s~s~~~DE 233 (498)
T PLN02613 173 AAGEAAAALAAASLVFKDVD--SSY--------SSKLLNHARSLFEFADKYR-----GSYQ----ASCPFYCSYSGYQDE 233 (498)
T ss_pred HHHHHHHHHHHHHHhcccCC--HHH--------HHHHHHHHHHHHHHHHhCC-----CCcC----CCCCcccccCccchH
Confidence 34788999999999998621 122 2568999999999987641 1111 1111 01233344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~ 647 (846)
+++|.+.||.+|||+.|++.+..
T Consensus 234 ---l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 234 ---LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 57789999999999999987764
No 155
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.12 E-value=0.012 Score=55.07 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.4
Q ss_pred cCCCEEEEEecc-CChhhhhhh
Q 003115 137 RDVPIFLSIGYS-TCHWCHVME 157 (846)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me 157 (846)
.|||++|.|+.. ||+.|..--
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l 45 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL 45 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccch
Confidence 689999999999 999998644
No 156
>PLN02909 Endoglucanase
Probab=96.03 E-value=0.27 Score=57.78 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---CCCCcchHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLDDYA 623 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~---~~~~leDyA 623 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++= |. +. +..+. ..++.|
T Consensus 183 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~---~~~~~y~s~s~y~D--- 240 (486)
T PLN02909 183 AETAAAMAASSMVFRHV--DHKY--------SRRLLNKAKLLFKFAKAHK-----GT-YD---GECPFYCSYSGYND--- 240 (486)
T ss_pred HHHHHHHHHHHHhhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CC-cC---CCCCccccCCCcch---
Confidence 78899999999999862 1222 1568999999999998752 11 11 11111 123333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~ 647 (846)
.+++|...||.+|||..|++.+..
T Consensus 241 El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 241 ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568888999999999999997764
No 157
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.03 E-value=1.1 Score=49.07 Aligned_cols=133 Identities=12% Similarity=-0.010 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchHHHHH
Q 003115 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 549 mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~~~~leDyA~~i 626 (846)
.+.+|+.+++.+++ +.+.+.++.+..++.+...+ . ++.++. ..++.....++..+-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 37788899988854 56777777777766555433 2 333221 1112223345556667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
.+++.++++++++.+.+.+++..+.+.+..... ..+...=.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------------------LKNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------------------CCCCCcCcCccchHHHHHHHHHHhCC
Confidence 899999999999999999999888776554210 00112233455566788889999986
Q ss_pred CCchHHHHHHHHHHHHH
Q 003115 707 SKSDYYRQNAEHSLAVF 723 (846)
Q Consensus 707 ~~~~~y~~~A~~~l~~~ 723 (846)
+.+++.++.+....
T Consensus 285 ---~~~~~~a~~~~~~~ 298 (343)
T cd04434 285 ---LKFLARALALALLL 298 (343)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 77888887666543
No 158
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=95.97 E-value=0.028 Score=55.52 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHhcCCCEEEEEeccCChhhhh
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHV 155 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~ 155 (846)
..+.-.||+|+|.|.++||+.|..
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~ 39 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQ 39 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhh
Confidence 334446999999999999999965
No 159
>PLN02412 probable glutathione peroxidase
Probab=95.97 E-value=0.018 Score=57.99 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=17.6
Q ss_pred cCCCEEEEEeccCChhhhh
Q 003115 137 RDVPIFLSIGYSTCHWCHV 155 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~ 155 (846)
.||+|+|.|+++||+.|+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDS 46 (167)
T ss_pred CCCEEEEEEeCCCCCChHH
Confidence 5799999999999999995
No 160
>PLN02420 endoglucanase
Probab=95.92 E-value=0.38 Score=57.02 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+-.....+.+........+-.++
T Consensus 190 a~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~ 254 (525)
T PLN02420 190 GETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFEFGDKYR-----GKYDESLKVVKSYYASVSGYMDELL 254 (525)
T ss_pred HHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhcC-----CccCCCCcccCCCCCCcCcccHHHH
Confidence 77899999999999862 1122 2568999999999887531 2110000000000011111235778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
+|.+.||.+|||..|++.+.+..
T Consensus 255 WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 255 WGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999887544
No 161
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.89 E-value=0.044 Score=64.77 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCC-CCCcccccccCCCCCCCCChHHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (846)
..=.+-|||.+|.+|+|+.||++|++|.+.+..-| |..+|--+..-. .......... ....+..+.-+.+..-+.+|
T Consensus 157 tIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~~L 234 (522)
T PTZ00470 157 TIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFNYL 234 (522)
T ss_pred ehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHHHH
Confidence 34568899999999999999999999999999888 555553221111 0000000000 01223344445566678899
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 701 ASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 701 ~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
+++||+ +.|.+.++++.+.+..
T Consensus 235 S~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 235 SEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHhhCC---HHHHHHHHHHHHHHHh
Confidence 999996 8999999999988864
No 162
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.88 E-value=0.022 Score=54.78 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=19.0
Q ss_pred cCCCEEEEEeccCChh-hhhhhh
Q 003115 137 RDVPIFLSIGYSTCHW-CHVMEV 158 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~ 158 (846)
.+|+++|.|+++||.. |...-.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~ 43 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLA 43 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHH
Confidence 6899999999999998 986544
No 163
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.88 E-value=0.03 Score=46.95 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.-|+++||++|+.+.. .++. .+.-..++|.++.+...+.+ ....|..+.|+.++- |+.+.|
T Consensus 3 ~lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~----~~~~~~~~vP~~~~~---~~~~~g 63 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEV----LKVLGQRGVPVIVIG---HKIIVG 63 (74)
T ss_pred EEEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHH----HHHhCCCcccEEEEC---CEEEee
Confidence 4589999999999764 2322 23444566776555433322 122488899999873 666433
No 164
>PLN00119 endoglucanase
Probab=95.79 E-value=0.34 Score=56.93 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~~~leDyA~~ 625 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- | .+... .++...-. -...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g-~y~~~~~~~~g~Y~-ss~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----G-LYQNSIPNAGGFYA-SSGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----C-cccCCCCCCCCCCC-CCchhhHH
Confidence 77889999999999862 1122 2568999999999988741 1 12110 01111000 01223468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 003115 626 ISGLLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 626 i~aLl~LYe~Tgd~~yL~~A~~ 647 (846)
++|...||.+|||..|++.+..
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 8999999999999999987653
No 165
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.77 E-value=0.38 Score=56.26 Aligned_cols=300 Identities=15% Similarity=0.058 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEE-EEcCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~R-YsvD~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~f 411 (846)
+..++.|..--+++.. .+|--.|=.+. +.....-. .+.-+-.|-+-+-+.--|....++|||+.|.+.|+++.+.
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~ 175 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA 175 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHH
Confidence 4555555555565554 55654454442 33322111 1222346778888888899999999999999999999999
Q ss_pred HHHh--ccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCC
Q 003115 412 LRRD--MIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEF 488 (846)
Q Consensus 412 l~r~--m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~-~~~~~~~f~i~~~Gn~e~~~~~d~~g~f 488 (846)
|.+. -....|-+-..+|+++.. -.+..+.|. +.++. .+.+.+.|-+....
T Consensus 176 l~~~~~~~~~~gL~p~~id~~~g~-------~~~~~~~~G------a~~DS~YEYLlK~~lL~g~~-------------- 228 (452)
T PF01532_consen 176 LWRSQNRSKIPGLFPNFIDPSTGK-------WTSSSISLG------AGGDSFYEYLLKMYLLLGGT-------------- 228 (452)
T ss_dssp HHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SS------TTTHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHhhhccCCcccCcceecCCcCc-------ccccccccC------CCcchHHHhhhhhhhhcCcc--------------
Confidence 9982 222344444477776531 112333333 11111 12222222222100
Q ss_pred CCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCC---CCCCCchh----------hhchHHHHHHHHHH
Q 003115 489 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRP---RPHLDDKV----------IVSWNGLVISSFAR 555 (846)
Q Consensus 489 eg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~---~P~~DdKi----------lt~WNglmI~ALa~ 555 (846)
.+.+ .+...+.++.+++.|+.....+. ..++.+.. +..--++.-.-|+-
T Consensus 229 -----------d~~~-------~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~L 290 (452)
T PF01532_consen 229 -----------DEQY-------RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLAL 290 (452)
T ss_dssp -----------THHH-------HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHH
T ss_pred -----------chHH-------HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHH
Confidence 0001 12223444444555433211111 11111110 00111222223333
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCC-----------CC-CCCCcchH
Q 003115 556 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGP-----------SK-APGFLDDY 622 (846)
Q Consensus 556 A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~-----------~~-~~~~leDy 622 (846)
+++.+++ +.+++.|.++.+..........+|..-..+. +.. .. .......|
T Consensus 291 g~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 354 (452)
T PF01532_consen 291 GAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRY 354 (452)
T ss_dssp HHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B
T ss_pred hhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccc
Confidence 4444433 7899999999988765443322354333311 110 00 00011122
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHH
Q 003115 623 ---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (846)
Q Consensus 623 ---A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~r 699 (846)
-.+|+.+.-+|++|||+.|+++|.++++.+.++..- ..||-...+-... ....++.+|| ..+++-|--
T Consensus 355 ~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~~~-----~~~~~D~meS--f~laETlKY 425 (452)
T PF01532_consen 355 LLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVTSD-----PPQKDDRMES--FFLAETLKY 425 (452)
T ss_dssp -S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETTSS-----SSCBBS-B-C--HHHHTHHHH
T ss_pred cchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccCcC-----CcccCCCccc--eehHhhhHH
Confidence 378999999999999999999999999999998853 3455543221100 1112333444 567888888
Q ss_pred HHHHhCC
Q 003115 700 LASIVAG 706 (846)
Q Consensus 700 L~~lt~~ 706 (846)
||-+..+
T Consensus 426 lYLlFsd 432 (452)
T PF01532_consen 426 LYLLFSD 432 (452)
T ss_dssp HHHHTSS
T ss_pred HHhhcCC
Confidence 8888765
No 166
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.69 E-value=0.008 Score=58.26 Aligned_cols=82 Identities=26% Similarity=0.349 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEE-cCCCCccHHHHHHHHHHHhcCCCC
Q 003115 127 GEEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKV-DREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 127 ~~eAl~~Ak~e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkv-D~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.++..++.+.-.|+ -++-|+.+||+.|...= |-+.++...+ -+.|++ .|++++++-..|.. .|...
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~ 97 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRS 97 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCee
Confidence 35556665555565 56668999999999844 6666666554 455553 45555555443421 36678
Q ss_pred CCcEEEECCCCceecc
Q 003115 204 WPLSVFLSPDLKPLMG 219 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~ 219 (846)
+|+.||+|.+|+++..
T Consensus 98 IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 98 IPTFIFLDKDGKELGR 113 (129)
T ss_dssp SSEEEEE-TT--EEEE
T ss_pred cCEEEEEcCCCCEeEE
Confidence 9999999999999854
No 167
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.65 E-value=0.077 Score=54.74 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=53.1
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH------------------HHHHH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM------------------TYVQA 197 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~------------------~~~~~ 197 (846)
.||+|+|.|+ ++||+.|..- -..|.+ ...++-+.++..|-|..+. +...+.|. .....
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~e-l~~l~~-~~~~f~~~g~~vigIS~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTE-LGDVAD-HYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHH-HHHHHH-HHHHHHhCCCEEEEEeCCC-HHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 5899999999 9999999983 323431 1222222344444443331 11111111 00111
Q ss_pred hcCC----CCC--CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 198 LYGG----GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 198 ~~g~----~G~--P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..|. .|+ |.++++||+|++.+..-+-.+. + ++..++|+.+.
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l~ 153 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKIK 153 (187)
T ss_pred HcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 1243 366 9999999999998763332222 1 25666665553
No 168
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.59 E-value=0.075 Score=54.55 Aligned_cols=94 Identities=13% Similarity=-0.016 Sum_probs=51.8
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHH-hcC--eEEEEEcCCCCccHHHHH-------------------HH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDW--FVSIKVDREERPDVDKVY-------------------MT 193 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~l-n~~--FV~vkvD~ee~p~~~~~y-------------------~~ 193 (846)
.||+++|.|+ ++||+.|..--. .|+ +..+.+ +++ +|.|-+|.. ...+.| ..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~-~l~--~~~~~~~~~gv~vi~VS~D~~---~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELE-DLA--DKYAELKKLGVEVYSVSTDTH---FVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHH-HHH--HHHHHHHhcCCcEEEEeCCCH---HHHHHHHhhhhhccCcceeEEECCccH
Confidence 5899999999 999999997332 232 122222 234 444444421 111111 01
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003115 194 YVQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 194 ~~~~~~g~~------G~P~~v~l~pdg~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (846)
.... .|.. +.|.++|+|++|++.+.... .++. ....++|+.|.
T Consensus 104 ~a~~-~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l~ 153 (187)
T TIGR03137 104 LTRN-FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKIK 153 (187)
T ss_pred HHHH-hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 1111 2332 35999999999999876422 2222 25667776664
No 169
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.57 E-value=0.075 Score=62.11 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe--cC-CCCCCC--
Q 003115 544 SWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RN-GPSKAP-- 616 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~--~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~--~d-g~~~~~-- 616 (846)
.-+...+.+|.-||... +| +.+|+.|+++++.|...| +..+|.-+... +. +.....
T Consensus 77 Et~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~~~ 139 (452)
T PF01532_consen 77 ETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWPGG 139 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTCCG
T ss_pred HhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCCCC
Confidence 45688899999999999 77 789999999999999998 43355433322 22 111111
Q ss_pred -CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCC--CCCcccccccCCCCCCCCChHH-H
Q 003115 617 -GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG--EDPSVLLRVKEDHDGAEPSGNS-V 692 (846)
Q Consensus 617 -~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~--~~~~l~~R~k~~~D~a~PS~Ns-v 692 (846)
..+.+.+-++.=+..|.++|||++|.+.|..+.+.+.+.-......|.+-..- ..+... .......+++ .
T Consensus 140 ~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~------~~~~~~Ga~~DS 213 (452)
T PF01532_consen 140 ESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWT------SSSISLGAGGDS 213 (452)
T ss_dssp EEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BS------STEE-SSTTTHH
T ss_pred cccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCccc------ccccccCCCcch
Confidence 23456666788889999999999999999999988876210000112221110 001111 0111223333 4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003115 693 SVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (846)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 732 (846)
.-+-|++.+.+++.. ++.|++.-++.++.+...+...|.
T Consensus 214 ~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 214 FYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp HHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred HHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 778899999999853 488999988888888877655533
No 170
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.54 E-value=0.0084 Score=66.52 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=141.2
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCCccccccccccCCceEEecHHHHH
Q 003115 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 454 (846)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~---~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~ 454 (846)
||+ -|-++.+|.++++.++++.|.+.+.+.++.+.+.+... ..|+|. |..|-. |...
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi~--~~l~--- 67 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGIA--YALS--- 67 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHHH--HHHH---
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHHH--HHHH---
Confidence 455 67789999999999999999999999999998876432 222322 111111 1100
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003115 455 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 534 (846)
Q Consensus 455 ~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~ 534 (846)
-+...+ -....+.+.++.+.+.+.+.......
T Consensus 68 --------------~~~~~~----------------------------------~~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 68 --------------YLSKRL----------------------------------GDEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp --------------HHCCCT----------------------------------CHHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred --------------HHHHhc----------------------------------cchHHHHHHHHHHHHHHHHhhhhccc
Confidence 010000 00122234445554444433322211
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 003115 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 612 (846)
Q Consensus 535 P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~--~G~l~~~~~dg~ 612 (846)
.-.| ++..- +=++..|...++.+++ +++++.+.+..+.|.+....-. ...+...+. ..
T Consensus 100 ~~~D--~l~G~-aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 NDYD--LLSGL-AGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GGCS--TTTSH-HHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred ccch--hhccc-HHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 1122 22222 2235566666777655 6788888888888876654310 000100011 11
Q ss_pred CCCCCCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHH
Q 003115 613 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (846)
Q Consensus 613 ~~~~~~leDyA~~i~aLl~LY-e~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (846)
....++..+.+=.+.+|+.+| +.++++++++.++++.+...+++...+ ++|.......+. .. -..--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDD-GGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGC-CT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCccc-CCCCCCCCcccc-----cc--ccccccCcH
Confidence 223588889999999999999 699999999999999999988875433 445543221100 00 112345666
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 692 v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
=++.++.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 788888899999864 7889988888777655
No 171
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.49 E-value=0.12 Score=58.25 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=81.3
Q ss_pred cCcc-chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 122 DWFA-WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 122 ~W~~-~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
.|.. ..++|++.||+.++..+|+|.. --.--.+|++-+|.|..|.+.+-..||.|||+..+.- +.++.+ ++-
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~g-ddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-----a~qFs~-IYp 74 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISG-DDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-----ATQFSA-IYP 74 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEec-CchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-----hhhhhh-hcc
Confidence 3554 3589999999876655555544 4566788999999999999999999999999986431 222222 235
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHH
Q 003115 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (846)
..-+|...|+.-.|.|+...+.+-. --++..+|.+.|.-
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~--------adeL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVT--------ADELASSIEKVWLG 113 (506)
T ss_pred cccccceeeecCCCceeEEeecccc--------HHHHHHHHHHHHHH
Confidence 6789999999999999987654432 23677788888874
No 172
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.48 E-value=0.023 Score=56.02 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.3
Q ss_pred HHhcCCCEEEEEeccCChhhhhh
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVM 156 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~m 156 (846)
+.-.||+|+|.|+++||+ |...
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~e 39 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTPQ 39 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chHH
Confidence 333599999999999999 9763
No 173
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.22 E-value=0.062 Score=44.99 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=36.5
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.|+.+||++|+.+.. .+.. .+-.|.. +|.+..++..+.+ +.+++.+++|+.++ +|+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~-~l~~------~~i~~~~--~~i~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKR-FLDE------RGIPFEE--VDVDEDPEALEEL----KKLNGYRSVPVVVI---GDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHH-HHHH------CCCCeEE--EeCCCCHHHHHHH----HHHcCCcccCEEEE---CCEEEec
Confidence 45689999999998753 2221 2223444 4554444443333 33457789998876 3455544
No 174
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.21 E-value=0.041 Score=53.29 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=49.0
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC-------------CccHHHHH-HHHHHHhcC
Q 003115 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------RPDVDKVY-MTYVQALYG 200 (846)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee-------------~p~~~~~y-~~~~~~~~g 200 (846)
.||+++|.|++.| |..|..-.. .|+ +..+... =.+|.|-+|..+ -|-+...- ...... .|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~-~l~--~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~-~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTK-RFN--KEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA-YG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHH-HHH--HHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH-hC
Confidence 4899999999998 699997532 222 1122221 135555444210 01000000 111111 13
Q ss_pred CC----C--CCcEEEECCCCceeccc-cccCCCCCCCcccHHHHH
Q 003115 201 GG----G--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL 238 (846)
Q Consensus 201 ~~----G--~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L 238 (846)
.. | .|+++++|++|++++.. ++.+.. .|.+.++|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~----~~~~~~~~ 141 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELVPEITD----EPDYEAAL 141 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEECCCccc----CCCHHHHh
Confidence 32 2 68999999999998764 233322 35666655
No 175
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.16 E-value=0.067 Score=53.84 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=51.9
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH----------------HHHHhc
Q 003115 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (846)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~----------------~~~~~~ 199 (846)
.||+|+|.|+++| |+.|...-. .|++ ..+.+ +++..|-|..+. |...+.|.+ ......
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~-~l~~--~~~~~-~~~~vv~vs~D~-~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~ 117 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVR-KFNQ--EAAEL-DNTVVLCISADL-PFAQKRFCGAEGLENVITLSDFRDHSFGKAY 117 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHH-HHHH--HHHHc-CCcEEEEEeCCC-HHHHHHHHHhCCCCCceEeecCCccHHHHHh
Confidence 4899999999999 999998432 2221 12222 133333333331 111111111 011112
Q ss_pred CCCCCC---------cEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 200 GGGGWP---------LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 200 g~~G~P---------~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
|..+.| +++++|++|++.+...+.... ..+.+.++|+.++
T Consensus 118 gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~---~~~~~~~~l~~l~ 166 (167)
T PRK00522 118 GVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT---NEPDYDAALAALK 166 (167)
T ss_pred CCeecccccCCceeeEEEEECCCCeEEEEEECCCcC---CCCCHHHHHHHhh
Confidence 444445 999999999998764221111 2356777776653
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.11 E-value=0.1 Score=45.39 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=39.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
+.|+.+||++|+.+.+ .+ +.++-.|..+.+|.++.. ..+....+..+|..++|.. |++ |+.+.
T Consensus 3 ~~y~~~~Cp~C~~~~~-~l------~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~~~P~v-~~~--g~~ig 65 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-LL------KELGVKPAVVELDQHEDG---SEIQDYLQELTGQRTVPNV-FIG--GKFIG 65 (82)
T ss_pred EEEEcCCCHHHHHHHH-HH------HHcCCCcEEEEEeCCCCh---HHHHHHHHHHhCCCCCCeE-EEC--CEEEc
Confidence 5688999999999874 22 223335777777776442 1122233445688899996 444 45554
No 177
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.09 E-value=0.36 Score=54.07 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 003115 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 629 (846)
Q Consensus 550 I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aL 629 (846)
+.+|.++++++++ +++.+.|.++.+.+++.-.-..+.++-| | .+=.+.+|
T Consensus 230 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G----------~~G~~~~l 279 (343)
T cd04794 230 VYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----G----------IAGNAYAF 279 (343)
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----C----------ccchHHHH
Confidence 3467788888887 6899999998887654211101112322 2 23347899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 630 LDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 630 l~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
+.+|+.|++++|+++|..+.+.+.+...
T Consensus 280 L~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 280 LLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999887653
No 178
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.08 E-value=0.068 Score=54.64 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=15.6
Q ss_pred HhcCCCEE-EEEeccCChhhhh
Q 003115 135 RKRDVPIF-LSIGYSTCHWCHV 155 (846)
Q Consensus 135 k~e~KpI~-l~~g~~wC~wC~~ 155 (846)
.-.||+|+ +.+.++||+.|..
T Consensus 37 ~~~Gk~vvlv~n~atwCp~C~~ 58 (183)
T PTZ00256 37 KFKGKKAIIVVNVACKCGLTSD 58 (183)
T ss_pred HhCCCcEEEEEEECCCCCchHH
Confidence 33589864 3448999999996
No 179
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.94 E-value=0.066 Score=47.43 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
++++++.|+++||+.|+.+ .|.+.++..+ ....+.+|.. ..+++...|.. ....+|..++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~~ 95 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLLL 95 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEEE
Confidence 8999999999999999998 4444444433 3566667775 55666655532 1345687763
No 180
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.79 E-value=6 Score=48.38 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCcEEEEEc-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 358 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 358 gGGF~RYsv-D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~--~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
.||+- |+. +..|.+.. |-|..+.++..+....+ ++.+.++++++++||++ +++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~d------~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDSD------DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCcC------chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56664 553 44454442 67888899888776653 56788999999999996 7899999854
No 181
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.73 E-value=0.09 Score=44.88 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=37.6
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceecc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~-g~~G~P~~v~l~pdg~~~~~ 219 (846)
+..|+++||+.|+.+.. . .+.+.-.|. .+|.++.++....+ ..++ +..++|+.+ -.+|+++..
T Consensus 2 v~ly~~~~C~~C~~~~~-~------L~~~~~~~~--~idi~~~~~~~~~~----~~~~~~~~~vP~i~--~~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMR-T------LDKLGAAYE--WVDIEEDEGAADRV----VSVNNGNMTVPTVK--FADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHH-H------HHHcCCceE--EEeCcCCHhHHHHH----HHHhCCCceeCEEE--ECCCeEecC
Confidence 34589999999999865 1 122222343 46666555544333 2333 778999853 346666653
No 182
>PLN02175 endoglucanase
Probab=94.67 E-value=0.82 Score=53.76 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFL 625 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~~~~~leDyA~~ 625 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+..+...+ .+.........=.+
T Consensus 172 ae~AAALAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~DEl 236 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKDEL 236 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccHHH
Confidence 78899999999999862 1222 1467999999999988742 2221110000 01111111112456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 003115 626 ISGLLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 626 i~aLl~LYe~Tgd~~yL~~A~~ 647 (846)
++|.+.||.+|||..|++.+..
T Consensus 237 ~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 237 MWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 8899999999999999986644
No 183
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.073 Score=49.78 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
...+-++++-|+ |.-+||.+||.+. +.|.+ ++-++..|.+|..++.. .++.++..++|+...|..+|
T Consensus 7 v~~~i~~~~VVi--fSKs~C~~c~~~k-~ll~~------~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISENPVVI--FSKSSCPYCHRAK-ELLSD------LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcCCEEE--EECCcCchHHHHH-HHHHh------CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEE
Confidence 445555555444 6779999999954 57766 66688999999876543 33444455678888887654
No 184
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.64 E-value=1.4 Score=50.07 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHH
Q 003115 548 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLIS 627 (846)
Q Consensus 548 lmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~ 627 (846)
=++.+|..++++++| +.+.+.|.++.+.+...... .+ ......+..+.+=.+.
T Consensus 248 Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~~ 300 (382)
T cd04793 248 GIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLLF 300 (382)
T ss_pred HHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHHH
Confidence 345677788888887 78999999998776643211 00 1123456667788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 628 aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
.|+.+|+.|++++|++.|..+.+.+++.+-
T Consensus 301 ~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 301 IFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998764
No 185
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.33 E-value=0.097 Score=50.09 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=19.0
Q ss_pred cCCCEEEEEe-ccCChhhhhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEV 158 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~ 158 (846)
.||+++|.|+ +.||++|.....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~ 43 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELC 43 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHH
Confidence 5899999998 789999998654
No 186
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.041 Score=62.75 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
.+..+++.||.|+++||+.|++|+.+..+-+. .+. ......++|.+..+.+.+.+ ++.++|+.+|+-
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~---~~~~~~~v~~~~~d~~~~~~~~~~~--------~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAK---LLKSKENVELGKIDATVHKSLASRL--------EVRGYPTLKLFP 226 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHH---HhccCcceEEEeeccchHHHHhhhh--------cccCCceEEEec
Confidence 55678899999999999999999765544333 343 45666778877444444333 788999997776
Q ss_pred CCCc
Q 003115 212 PDLK 215 (846)
Q Consensus 212 pdg~ 215 (846)
++.+
T Consensus 227 ~~~~ 230 (383)
T KOG0191|consen 227 PGEE 230 (383)
T ss_pred CCCc
Confidence 6655
No 187
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.23 E-value=4.5 Score=49.28 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=39.7
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR 609 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~ 609 (846)
+.=+++...||..|+++...-.+. .....|.+.|.++.+.+.+++|+++.|.|.+.+.
T Consensus 413 ~~t~a~~~aAL~~aa~lA~~lGd~---------~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~ 470 (616)
T TIGR01577 413 TYTASAVYGGLDAAAAVADKLGEK---------RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIK 470 (616)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeec
Confidence 334678888888877664321000 0125789999999999999999987677776554
No 188
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.97 E-value=0.14 Score=49.61 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.7
Q ss_pred cC-CCEEEEEe-ccCChhhhh
Q 003115 137 RD-VPIFLSIG-YSTCHWCHV 155 (846)
Q Consensus 137 e~-KpI~l~~g-~~wC~wC~~ 155 (846)
.+ |+++|.|+ ++||+.|..
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~ 46 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTK 46 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHH
Confidence 35 88888876 999999985
No 189
>PRK15000 peroxidase; Provisional
Probab=93.91 E-value=0.16 Score=52.84 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH----------------------H
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM----------------------T 193 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~----------------------~ 193 (846)
.||+|+|.|+. +||..|..- -..|.+ -..++-++++..|-|..+. +...+.+. +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~E-l~~l~~-~~~~f~~~g~~vigvS~D~-~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ 109 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSE-LIAFDK-RYEEFQKRGVEVVGVSFDS-EFVHNAWRNTPVDKGGIGPVKYAMVADVKRE 109 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHH-HHHHHH-HHHHHHHCCCEEEEEECCC-HHHHHHHHhhHHHhCCccccCceEEECCCcH
Confidence 58999999999 599999983 333432 1122222345444444331 11111110 1
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcccHHHHHHHHH
Q 003115 194 YVQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 194 ~~~~~~g~~------G~P~~v~l~pdg~~~~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (846)
... ..|.. +.|.++|+||+|++.+...+ .|.. .++.++|+.+.
T Consensus 110 ia~-~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g-----r~~~eilr~l~ 159 (200)
T PRK15000 110 IQK-AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG-----RNIDEMLRMVD 159 (200)
T ss_pred HHH-HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 111 12332 58999999999999886443 3332 26777776664
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.82 E-value=0.19 Score=46.33 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=39.9
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
-++++-+ -|+.+||+||+.+.+ +.+-++-.|..| |+++.|+.. .+++.+..++|...+|.. |++ |
T Consensus 5 i~~~~Vv--vysk~~Cp~C~~ak~-------~L~~~~i~~~~v--did~~~~~~-~~~~~l~~~tg~~tvP~V-fi~--g 69 (99)
T TIGR02189 5 VSEKAVV--IFSRSSCCMCHVVKR-------LLLTLGVNPAVH--EIDKEPAGK-DIENALSRLGCSPAVPAV-FVG--G 69 (99)
T ss_pred hccCCEE--EEECCCCHHHHHHHH-------HHHHcCCCCEEE--EcCCCccHH-HHHHHHHHhcCCCCcCeE-EEC--C
Confidence 3445533 378899999999875 222233345544 444555543 233444455677888986 444 4
Q ss_pred ceec
Q 003115 215 KPLM 218 (846)
Q Consensus 215 ~~~~ 218 (846)
+.|.
T Consensus 70 ~~iG 73 (99)
T TIGR02189 70 KLVG 73 (99)
T ss_pred EEEc
Confidence 5553
No 191
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=93.79 E-value=0.18 Score=50.80 Aligned_cols=80 Identities=9% Similarity=-0.008 Sum_probs=45.1
Q ss_pred hcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHH--------------------
Q 003115 136 KRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT-------------------- 193 (846)
Q Consensus 136 ~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~-------------------- 193 (846)
-.||+++|.|+ ++||+.|..--. .|+ ++++.+ ++++..|-|..+.... .+.+.+
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~-~l~--~~~~~~~~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEII-AFS--DRYEEFKKLNAEVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHH-HHH--HHHHHHHHCCCEEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEECCc
Confidence 35899999998 899999998432 232 233333 2344444444432111 111111
Q ss_pred --HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003115 194 --YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 194 --~~~~~~g~~------G~P~~v~l~pdg~~~~~~ 220 (846)
..+. .|.. ++|+++++|++|++.+..
T Consensus 103 ~~~~~~-~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 103 KKISRD-YGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hhHHHH-hCCccccCCceeeEEEEECCCCeEEEEE
Confidence 1111 2322 578999999999888753
No 192
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.51 E-value=0.1 Score=49.94 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccH---HHHHHHH
Q 003115 128 EEAFAEARKRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDV---DKVYMTY 194 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~~---~~~y~~~ 194 (846)
.++++...+.+++|||.|.+ +||+.|..-+. -|.+.++ ++.+.|.|.+..+|.- +..|.+-
T Consensus 9 ~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep------~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 9 EKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEP------VVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHH------HHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHH------HHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 45555556788999999854 59999998764 3333333 3555555554433321 2233221
Q ss_pred HHHhcCCCCCCcEEEECCCCc
Q 003115 195 VQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~ 215 (846)
-.....++||.+-+...++
T Consensus 83 --p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 --PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp ---CC---SSSEEEECTSS-E
T ss_pred --ceeeeeecceEEEECCCCc
Confidence 0125679999998876644
No 193
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.41 E-value=0.17 Score=52.62 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=24.6
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
+.|.++|+||+|++.+...|-.+.+ .++-++|+.+.
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~g----r~~~ellr~l~ 151 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETG----RNIDEIIRITK 151 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 4799999999999887654443322 25666665554
No 194
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.21 E-value=0.22 Score=43.71 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
|+++++-+ -++.+||++|+...+ .++ ..+=.|..| |.++.++... + ...+|...+|..++ +
T Consensus 4 ~~~~~~V~--ly~~~~Cp~C~~ak~-~L~------~~gi~y~~i--di~~~~~~~~-~----~~~~g~~~vP~i~i---~ 64 (79)
T TIGR02190 4 ARKPESVV--VFTKPGCPFCAKAKA-TLK------EKGYDFEEI--PLGNDARGRS-L----RAVTGATTVPQVFI---G 64 (79)
T ss_pred cCCCCCEE--EEECCCCHhHHHHHH-HHH------HcCCCcEEE--ECCCChHHHH-H----HHHHCCCCcCeEEE---C
Confidence 44555533 489999999999764 332 233346554 4444433221 1 22357888999864 5
Q ss_pred Cceecc
Q 003115 214 LKPLMG 219 (846)
Q Consensus 214 g~~~~~ 219 (846)
|+.+.|
T Consensus 65 g~~igG 70 (79)
T TIGR02190 65 GKLIGG 70 (79)
T ss_pred CEEEcC
Confidence 665543
No 195
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=92.99 E-value=0.34 Score=52.31 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.1
Q ss_pred cCCCCCCcEEEECCCCceeccccccCCC
Q 003115 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPE 226 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~~tY~p~~ 226 (846)
.|..|+|++|+.|.+|++....+|.|++
T Consensus 215 lGv~GTPaiv~~d~~G~~~~v~G~~~~~ 242 (251)
T PRK11657 215 LGANATPAIYYMDKDGTLQQVVGLPDPA 242 (251)
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 4889999999999999876666687764
No 196
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=92.94 E-value=0.38 Score=39.81 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+-++++||++|+.... .++. . +.-...+|.+..++..+.+ +..+|...+|+.++ +|+.+.+
T Consensus 3 ~ly~~~~Cp~C~~~~~-~L~~------~--~i~~~~~di~~~~~~~~~l----~~~~~~~~~P~~~~---~~~~igg 63 (72)
T cd02066 3 VVFSKSTCPYCKRAKR-LLES------L--GIEFEEIDILEDGELREEL----KELSGWPTVPQIFI---NGEFIGG 63 (72)
T ss_pred EEEECCCCHHHHHHHH-HHHH------c--CCcEEEEECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEec
Confidence 3578999999999874 2221 1 2223356766655533333 33457778997754 5666654
No 197
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.90 E-value=0.6 Score=41.37 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=35.8
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~--~G~P~~v~l~pdg~~~~ 218 (846)
+..|+.+||++|+...+ .++.=.. .. ..+-...+|.++.+...+.. ..+.+. ..+|+.++ +|+.+.
T Consensus 3 v~iy~~~~C~~C~~a~~-~L~~l~~--~~-~~i~~~~idi~~~~~~~~el----~~~~~~~~~~vP~ifi---~g~~ig 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKE-LAEKLSE--ER-DDFDYRYVDIHAEGISKADL----EKTVGKPVETVPQIFV---DQKHIG 70 (85)
T ss_pred EEEEeCCCChhHHHHHH-HHHhhcc--cc-cCCcEEEEECCCChHHHHHH----HHHHCCCCCcCCEEEE---CCEEEc
Confidence 56689999999999764 2222110 01 24555566766544222222 122243 57899753 566653
No 198
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=92.83 E-value=0.18 Score=49.16 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc-ccccC
Q 003115 165 GVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG-GTYFP 224 (846)
Q Consensus 165 eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~-~tY~p 224 (846)
++++.+.. .+..+|||+++.|++...| |+.++|+.+|+. +|+.+.. .++.|
T Consensus 60 ELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siPTLl~Fk-dGk~v~~i~G~~~ 112 (132)
T PRK11509 60 ELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFPATLVFT-GGNYRGVLNGIHP 112 (132)
T ss_pred HHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCCEEEEEE-CCEEEEEEeCcCC
Confidence 44454542 3789999999999999888 899999888775 5666654 24455
No 199
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.68 E-value=0.22 Score=51.53 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=51.7
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-c--CeEEEEEcCCCC-ccH--HHH-------H---------HH
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-D--WFVSIKVDREER-PDV--DKV-------Y---------MT 193 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~--~FV~vkvD~ee~-p~~--~~~-------y---------~~ 193 (846)
.||+++|.|+. +||.+|..-.. .| .+.++.+. + .+|.|-+|-.+. +.. ... + ++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~-~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEII-QF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHH-HH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 58999999984 88999987443 23 23333333 2 466666653221 000 000 0 11
Q ss_pred HHHHhcCC----C--CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 194 YVQALYGG----G--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 194 ~~~~~~g~----~--G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..+. .|. . .+|.++|+||+|++.+...+-.+.+ ....++|+.|.
T Consensus 112 ia~~-ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~----r~~~e~l~~l~ 161 (199)
T PTZ00253 112 IARS-YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG----RNVEEVLRLLE 161 (199)
T ss_pred HHHH-cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC----CCHHHHHHHHH
Confidence 1222 233 2 3689999999999887543322221 24555555443
No 200
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=92.68 E-value=9.4 Score=43.58 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=69.3
Q ss_pred HHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC---cccCCCcEEEEEc---CCCCCC---------CCCchhHH
Q 003115 316 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHV---------PHFEKMLY 380 (846)
Q Consensus 316 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi---~D~vgGGF~RYsv---D~~W~v---------PHFEKMLy 380 (846)
.++-.|...++| ..--++....+...|+.+..|.- +-+..+||..... -..|.. |.--|-.-
T Consensus 91 ~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vE 167 (370)
T PF06202_consen 91 IALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVE 167 (370)
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchH
Confidence 344455555543 11123555567778898888644 1122467876432 356653 22224444
Q ss_pred HHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceee-eccCCC
Q 003115 381 DQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADS 431 (846)
Q Consensus 381 DNA~Ll~~ya~Ay~~t---~~---~~y~~~A~~t~~fl~r~m~~~~Ggfys-a~DADs 431 (846)
-||+...++..+..+. ++ ..|++.|++.-+=+.+.||++++|+|. ++|.+.
T Consensus 168 Iqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~ 225 (370)
T PF06202_consen 168 IQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDK 225 (370)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence 4888877765544433 23 478899999999889999999877776 766643
No 201
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.51 E-value=0.44 Score=56.60 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=66.8
Q ss_pred cccCCChhhhh---ccCCCccCccchHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003115 105 LAAEHSPYLLQ---HAHNPVDWFAWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (846)
Q Consensus 105 L~~e~SpYL~~---ha~~~v~W~~~~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (846)
.-+|=+++++. -+.++..- .++..++.++-+||+ +.-|...+|++|...-. .+ .+ .+..|.+...-.+|
T Consensus 82 ~g~Ef~s~i~~i~~~~~~~~~l---~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~-~~--~~-~a~~~~~i~~~~id 154 (517)
T PRK15317 82 MGHEFTSLVLALLQVGGHPPKL---DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ-AL--NL-MAVLNPNITHTMID 154 (517)
T ss_pred ccHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH-HH--HH-HHHhCCCceEEEEE
Confidence 34455555443 23333332 577888889989998 55589999999986543 22 23 34467777777789
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 181 ~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
..+.|++...| +..++|.+++ +|+.++.
T Consensus 155 ~~~~~~~~~~~--------~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 155 GALFQDEVEAR--------NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred chhCHhHHHhc--------CCcccCEEEE---CCcEEEe
Confidence 99999998877 7779999976 4455543
No 202
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=92.47 E-value=0.48 Score=54.85 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=75.0
Q ss_pred HHHHHcCCCHHHHHH----HHHHHHHHHHhhhcCCCCCCC-Cchhhhch--------------------HHHHHHHHHHH
Q 003115 502 ASASKLGMPLEKYLN----ILGECRRKLFDVRSKRPRPHL-DDKVIVSW--------------------NGLVISSFARA 556 (846)
Q Consensus 502 ~~a~~~g~~~~~l~~----~l~~~r~~L~~~R~~R~~P~~-DdKilt~W--------------------NglmI~ALa~A 556 (846)
++++++|..-+++.+ -|+...+.-++..++-.+|.+ |-+-||.. -+-.+.++++|
T Consensus 317 ~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vra 396 (557)
T PF06917_consen 317 ELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVRA 396 (557)
T ss_dssp HHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchhHhHHHHHH
Confidence 467777766555543 334444555555555566632 22222211 12236699999
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHHHHHHHHHHHHHH
Q 003115 557 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYAFLISGLLDLYEF 635 (846)
Q Consensus 557 ~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~-~~~~~leDyA~~i~aLl~LYe~ 635 (846)
+++.+| +..-+.+..++. ++-- |-+- ......+ .....-.+-.+++.|+|+||++
T Consensus 397 ~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig-~~~~~~~~~~~~~~~~sp~~L~allEL~~a 452 (557)
T PF06917_consen 397 YRLSRD----------------PELWDLARTMAH----HFGL---GDIG-NAAGKEPRVNMQTDNASPYLLFALLELYQA 452 (557)
T ss_dssp HHHS------------------HHHHHHHHHHHH----HTT----EE-T-TBTTBS-EE-TT-----HHHHHHHHHHHHH
T ss_pred HHcCCC----------------HHHHHHHHHHHh----hcCc---cccc-CccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 999887 667777777764 2210 1110 0000111 1123344567899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 003115 636 GSGTKWLVWAIELQNTQDELFLDREGGGYFNT 667 (846)
Q Consensus 636 Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (846)
|++++|++.|..+.+.+.+.-+. + |||-.
T Consensus 453 tq~~~~l~lA~~~g~~l~~~~~~--~-GlF~~ 481 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQHFH--R-GLFVA 481 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHHHEE--T-TEE-S
T ss_pred hCCHHHHHHHHHHHHHHHHHHcc--C-ceecC
Confidence 99999999999999988877654 3 45543
No 203
>PHA03050 glutaredoxin; Provisional
Probab=92.42 E-value=0.43 Score=44.87 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=38.7
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
.++++ ++-|..+||+||+...+ .|++-.|. ...|..+.+|..+ .++ .+..+...+|...+|..+| +
T Consensus 10 i~~~~--V~vys~~~CPyC~~ak~-~L~~~~i~---~~~~~~i~i~~~~~~~~----~~~~l~~~tG~~tVP~IfI-~-- 76 (108)
T PHA03050 10 LANNK--VTIFVKFTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENE----LRDYFEQITGGRTVPRIFF-G-- 76 (108)
T ss_pred hccCC--EEEEECCCChHHHHHHH-HHHHcCCC---cCCcEEEECCCCCCCHH----HHHHHHHHcCCCCcCEEEE-C--
Confidence 34444 34489999999998663 33222210 0145566666421 223 2333445568888999854 4
Q ss_pred Ccee
Q 003115 214 LKPL 217 (846)
Q Consensus 214 g~~~ 217 (846)
|+.|
T Consensus 77 g~~i 80 (108)
T PHA03050 77 KTSI 80 (108)
T ss_pred CEEE
Confidence 4555
No 204
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.35 E-value=0.29 Score=58.66 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=60.5
Q ss_pred hHHHHHHHHhcCCCEEEEE-eccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 127 GEEAFAEARKRDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~-g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.++.+++.++-+||+-|.+ ...+|++|....+.. .+++ ..|.+...-.+|.++.|++.+.| ++.+.|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~~-~~~~~i~~~~i~~~~~~~~~~~~--------~v~~vP 531 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRIA-SLNPNVEAEMIDVSHFPDLKDEY--------GIMSVP 531 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHHH-HhCCCceEEEEECcccHHHHHhC--------CceecC
Confidence 5778888889899997776 799999999876533 3333 34556777778999999988777 788999
Q ss_pred cEEEECCCCceeccc
Q 003115 206 LSVFLSPDLKPLMGG 220 (846)
Q Consensus 206 ~~v~l~pdg~~~~~~ 220 (846)
.+|+ ||++++.|
T Consensus 532 ~~~i---~~~~~~~G 543 (555)
T TIGR03143 532 AIVV---DDQQVYFG 543 (555)
T ss_pred EEEE---CCEEEEee
Confidence 9987 56666543
No 205
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.32 E-value=0.5 Score=43.43 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCEEEEE-e---ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 129 EAFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~-g---~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
+.+++.-+++| |+|.. | ++||+||+...+ .|.+ ++-.|.. +|.+++|++.+ .+..++|...+
T Consensus 3 ~~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~-lL~~------~~i~~~~--~di~~~~~~~~----~l~~~tg~~tv 68 (97)
T TIGR00365 3 ERIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQ-ILKA------CGVPFAY--VNVLEDPEIRQ----GIKEYSNWPTI 68 (97)
T ss_pred HHHHHHhccCC-EEEEEccCCCCCCCchHHHHHH-HHHH------cCCCEEE--EECCCCHHHHH----HHHHHhCCCCC
Confidence 34555556655 55554 3 389999998763 3322 2224553 56655555433 23334576777
Q ss_pred CcEEEECCCCcee
Q 003115 205 PLSVFLSPDLKPL 217 (846)
Q Consensus 205 P~~v~l~pdg~~~ 217 (846)
|.. |++ |+.|
T Consensus 69 P~v-fi~--g~~i 78 (97)
T TIGR00365 69 PQL-YVK--GEFV 78 (97)
T ss_pred CEE-EEC--CEEE
Confidence 876 444 4544
No 206
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.24 E-value=0.57 Score=38.55 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=33.5
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
+-|+.+||++|+...+ +|++ ++=..-+|.++.++..+.+ ...+|..+.|+.++
T Consensus 2 ~vy~~~~C~~C~~~~~----------~L~~~~i~y~~~dv~~~~~~~~~l----~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKE----------FLDEKGIPYEEVDVDEDEEAREEL----KELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHH----------HHHHTTBEEEEEEGGGSHHHHHHH----HHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHHHH----------HHHHcCCeeeEcccccchhHHHHH----HHHcCCCccCEEEE
Confidence 4588999999999764 3333 3333345555555443333 33448889999886
No 207
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=92.21 E-value=0.91 Score=49.35 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=51.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHH----------------------HH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY----------------------MT 193 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y----------------------~~ 193 (846)
.+|+|+|.|+ ++||+.|.. |--.|++ ...++-++++..|=|..+. +...+.+ .+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~-El~~l~~-~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPS-ELLGFSE-RLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHHHH-HHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 4788888887 899999998 3333432 1122222233333333221 1100100 11
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 194 ~~~~~~g~~-----G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..+. .|.. ..|.++|+||+|++.+...|-.+.+ .+.-++|+.|.
T Consensus 174 iaka-yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g----r~v~eiLr~l~ 222 (261)
T PTZ00137 174 VSKS-FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG----RSVDETLRLFD 222 (261)
T ss_pred HHHH-cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 1222 2332 4799999999999998754422221 25666665554
No 208
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=92.11 E-value=24 Score=43.26 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC
Q 003115 280 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (846)
Q Consensus 280 ~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgG 359 (846)
+.+.+++++++.|... |...||+|.. |.+..+..|--+.. |. ...+... +.++.+.. =+..+.+|
T Consensus 233 lr~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~~~----~~l~~l~~-~~~~~~~g 297 (634)
T cd02892 233 LRRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPAFK----RHLERIDD-FLWLGPEG 297 (634)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHHHH----HHHHHHHh-cEEEecCC
Confidence 3456677777777655 7779999884 33433333222221 10 1122332 33443322 12223356
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCC
Q 003115 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGG 421 (846)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~-~~~G 421 (846)
+++. ..+ .--++|-|+.+.++.++... +.+....+++++||.+.-. ++.|
T Consensus 298 ~~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~g 348 (634)
T cd02892 298 MKMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPG 348 (634)
T ss_pred cEEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCC
Confidence 6643 111 11278999999999987532 3677889999999987432 4445
No 209
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=92.09 E-value=1.5 Score=47.17 Aligned_cols=155 Identities=18% Similarity=0.268 Sum_probs=98.6
Q ss_pred hhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhcc
Q 003115 528 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHLY 597 (846)
Q Consensus 528 ~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~----------~~~~yLe~A~~~a~~l~~~l~ 597 (846)
.|..|..|-+.+.|.+.||-.|--++.-=. ++ .-||.|.-|- ...++|+.|-+.++|+.+.+.
T Consensus 111 vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~---q~----~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 111 VRRRRALPKLTNQFVEGWVDEDGGGIPWRK---QD----QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred eeccccchhHHHhhhhccccccCCcccccc---cc----eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhcc
Confidence 556777788899999999987755543221 11 2345555431 123599999999999999999
Q ss_pred ccCCCeEEEE---ecCCCCCC-CCCcchHHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHccccCCCcccccC-C
Q 003115 598 DEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT-G 669 (846)
Q Consensus 598 d~~~G~l~~~---~~dg~~~~-~~~leDyA~~--i~aLl~LYe-~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~-~ 669 (846)
|++ |..+.- -.+|.... ..+.+-+... +++-|+||+ .+.+.+|+..+..+.....++.-. -|-+-+.. .
T Consensus 184 d~D-GlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~gg 260 (377)
T COG4833 184 DPD-GLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAGG 260 (377)
T ss_pred CCC-cchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCCC
Confidence 964 533221 12343322 2344444444 448899999 788889999999999999988742 24333322 2
Q ss_pred CCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 670 EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 670 ~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
.|+.++ -++.+.-|..++.-+.+
T Consensus 261 GDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 261 GDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred Cccchh--------------hhHHHHHHHHHHHhcCC
Confidence 233332 14677777777777755
No 210
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.39 E-value=0.58 Score=40.16 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=32.5
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
+-++.+||++|++..+ .++. .+=.|.. +|.++.|+..+.+ +.++|....|..+|
T Consensus 4 ~ly~~~~C~~C~ka~~-~L~~------~gi~~~~--~di~~~~~~~~el----~~~~g~~~vP~v~i 57 (73)
T cd03027 4 TIYSRLGCEDCTAVRL-FLRE------KGLPYVE--INIDIFPERKAEL----EERTGSSVVPQIFF 57 (73)
T ss_pred EEEecCCChhHHHHHH-HHHH------CCCceEE--EECCCCHHHHHHH----HHHhCCCCcCEEEE
Confidence 4588999999999763 2222 2223444 4666666544433 33457778888744
No 211
>PRK13599 putative peroxiredoxin; Provisional
Probab=90.88 E-value=0.64 Score=49.04 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
+.|.++|+||+|++.+...| |.. .| ..+.++|+.+..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~~-p~~--~g-r~~~eilr~l~~ 154 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMYY-PQE--VG-RNVDEILRALKA 154 (215)
T ss_pred eeeEEEEECCCCEEEEEEEc-CCC--CC-CCHHHHHHHHHH
Confidence 57999999999999876433 322 12 367777776654
No 212
>PRK10638 glutaredoxin 3; Provisional
Probab=90.28 E-value=0.87 Score=40.20 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.-|+.+||++|+.... .++. .+-.|..+ |.++.++..+.+ ...+|...+|..++ +|+.+.+
T Consensus 5 ~ly~~~~Cp~C~~a~~-~L~~------~gi~y~~~--dv~~~~~~~~~l----~~~~g~~~vP~i~~---~g~~igG 65 (83)
T PRK10638 5 EIYTKATCPFCHRAKA-LLNS------KGVSFQEI--PIDGDAAKREEM----IKRSGRTTVPQIFI---DAQHIGG 65 (83)
T ss_pred EEEECCCChhHHHHHH-HHHH------cCCCcEEE--ECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEeC
Confidence 3578899999998653 2222 12245554 444455443333 33458888997644 4666643
No 213
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=90.25 E-value=0.8 Score=44.06 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=40.0
Q ss_pred cCCCEEEEE-eccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 137 RDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 137 e~KpI~l~~-g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+|+++|.| .++||+.|+.--. .++ ++.+.+. +++..|-|..+..... ..| . ...++|.-++.||++
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~-~l~--~~~~~~~~~~v~vv~V~~~~~~~~-~~~---~----~~~~~~~p~~~D~~~ 90 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLR-ALS--KLLPELDALGVELVAVGPESPEKL-EAF---D----KGKFLPFPVYADPDR 90 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHH-HHH--HHHHHHHhcCeEEEEEeCCCHHHH-HHH---H----HhcCCCCeEEECCch
Confidence 345655555 6999999997543 222 2333332 3566666665533222 222 2 234677788999997
Q ss_pred cee
Q 003115 215 KPL 217 (846)
Q Consensus 215 ~~~ 217 (846)
+..
T Consensus 91 ~~~ 93 (149)
T cd02970 91 KLY 93 (149)
T ss_pred hHH
Confidence 754
No 214
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=90.22 E-value=1 Score=48.09 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=21.7
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhc
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~e 159 (846)
..++|..++.|+-..|++||+++++
T Consensus 104 ~~~~k~~I~vFtDp~CpyCkkl~~~ 128 (232)
T PRK10877 104 APQEKHVITVFTDITCGYCHKLHEQ 128 (232)
T ss_pred CCCCCEEEEEEECCCChHHHHHHHH
Confidence 4568889999999999999999854
No 215
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=90.16 E-value=6 Score=48.23 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcch
Q 003115 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDD 621 (846)
Q Consensus 546 NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~--~-~~~leD 621 (846)
.++++.||..++ +.+.|++..+|+.+.... +|.+++. +-+|.+. . ...+|.
T Consensus 300 ~~~~a~Al~~~G-----------------------~~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~ 354 (616)
T TIGR01577 300 ASYIATALDRAG-----------------------YHDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDE 354 (616)
T ss_pred HHHHHHHHHHCC-----------------------CHHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccc
Confidence 467788887774 336788889999887643 4666665 4567654 2 466777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---cccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF---LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F---~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
++..+.++..++..|+|..+++.--...+.+.+.. +++ + ... ++..+ ++...+..+..+++...+|.
T Consensus 355 ~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~-l~~---~~~~l----WEer~G~~~~t~a~~~aAL~ 424 (616)
T TIGR01577 355 TGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP--E-TPL---PCRDL----WEEREGVFTYTASAVYGGLD 424 (616)
T ss_pred hhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC--C-CCC---CCCcc----ceecCCccCccHHHHHHHHH
Confidence 99999999999999999887655444444443332 222 1 111 11111 11122445667776666665
Q ss_pred H---HHHHhCCCC-chHHHHHHHHHHHHHHH
Q 003115 699 R---LASIVAGSK-SDYYRQNAEHSLAVFET 725 (846)
Q Consensus 699 r---L~~lt~~~~-~~~y~~~A~~~l~~~~~ 725 (846)
+ |+...|+.. ...|++.|+++-+.+..
T Consensus 425 ~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~ 455 (616)
T TIGR01577 425 AAAAVADKLGEKRLAQNWKKAAEFIKRAVEE 455 (616)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 4 455555421 13566666665555443
No 216
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.02 E-value=1.2 Score=47.01 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC--ccHHHHH--HHHHHHhcCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGG 203 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~--p~~~~~y--~~~~~~~~g~~G 203 (846)
++++... ++-=|+.|+.+.|+.||.+.. -|..+-++ +|-.+-|+.|.. |.+.... ....+. .|+.-
T Consensus 113 ~~l~~la--~~~gL~~F~~~~C~~C~~~~p------il~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~-l~v~~ 183 (215)
T PF13728_consen 113 KALKQLA--QKYGLFFFYRSDCPYCQQQAP------ILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKR-LGVKV 183 (215)
T ss_pred HHHHHHh--hCeEEEEEEcCCCchhHHHHH------HHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHH-cCCCc
Confidence 3444433 556678899999999999873 44555444 354444554432 1110000 011112 27788
Q ss_pred CCcEEEECCCCcee
Q 003115 204 WPLSVFLSPDLKPL 217 (846)
Q Consensus 204 ~P~~v~l~pdg~~~ 217 (846)
+|++++++|+++.+
T Consensus 184 ~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 184 TPALFLVNPNTKKW 197 (215)
T ss_pred CCEEEEEECCCCeE
Confidence 99999999988443
No 217
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.90 E-value=1.5 Score=39.54 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCCEEEEEe----ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 138 DVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 138 ~KpI~l~~g----~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
++||+|... .+||+||+...+ .|++ .+-.|..+ |.++.+++ ++.+...+|...+|.. |++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~-~L~~------~~i~y~~i--dv~~~~~~----~~~l~~~~g~~tvP~v-fi~-- 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQ-ILNQ------LGVDFGTF--DILEDEEV----RQGLKEYSNWPTFPQL-YVN-- 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHH-HHHH------cCCCeEEE--EcCCCHHH----HHHHHHHhCCCCCCEE-EEC--
Confidence 356666543 379999998653 2222 22234444 44444543 3344455677889986 554
Q ss_pred Ccee
Q 003115 214 LKPL 217 (846)
Q Consensus 214 g~~~ 217 (846)
|+.|
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 5554
No 218
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.79 E-value=0.61 Score=51.01 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=47.7
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHH--HHH-HHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEG--VAK-LLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~e--Va~-~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.+..|||.|+|+||+..+++.. +|+... +.+ +=+..-|.-+||.+..-+|...| .+.-+||.=+
T Consensus 12 s~elvfv~FyAdWCrFSq~L~p-iF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky--------~I~KyPTlKv 78 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKP-IFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKY--------HINKYPTLKV 78 (375)
T ss_pred cceEEeeeeehhhchHHHHHhH-HHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhh--------ccccCceeee
Confidence 3778999999999999999886 665432 222 12235788999999888888888 5668898743
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.78 E-value=1.2 Score=52.81 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=57.4
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.++.+++.++-+||+ +.-|....|++|...-. .+ .-.+..|.+...-.+|..+.|++...| +..++|
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~~id~~~~~~~~~~~--------~v~~VP 172 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHTMIDGALFQDEVEAL--------GIQGVP 172 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEEEEEchhCHHHHHhc--------CCcccC
Confidence 578888889889998 55589999999986443 22 223455666666668888899988877 777999
Q ss_pred cEEEECCCCceecc
Q 003115 206 LSVFLSPDLKPLMG 219 (846)
Q Consensus 206 ~~v~l~pdg~~~~~ 219 (846)
.+++ +|+.++.
T Consensus 173 ~~~i---~~~~~~~ 183 (515)
T TIGR03140 173 AVFL---NGEEFHN 183 (515)
T ss_pred EEEE---CCcEEEe
Confidence 9987 4455543
No 220
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.58 E-value=0.9 Score=43.68 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=57.0
Q ss_pred hhhhccCCCccCccchHHHHHHH--HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEE-EEcCCCCccHH
Q 003115 112 YLLQHAHNPVDWFAWGEEAFAEA--RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVD 188 (846)
Q Consensus 112 YL~~ha~~~v~W~~~~~eAl~~A--k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~v-kvD~ee~p~~~ 188 (846)
||+-|-++. | +..+| -.+.|.|.|-||-+|=+-|-.|+. .+ ..+++.+. +|+.| -||+++-|+..
T Consensus 3 ~lLp~L~s~--~------~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~-~L--~~i~~~vs-nfa~IylvdideV~~~~ 70 (142)
T KOG3414|consen 3 YLLPTLHSG--W------EVDQAILSTEERLVVIRFGRDWDPTCMKMDE-LL--SSIAEDVS-NFAVIYLVDIDEVPDFV 70 (142)
T ss_pred eeccccccH--H------HHHHHHhcccceEEEEEecCCCCchHhhHHH-HH--HHHHHHHh-hceEEEEEecchhhhhh
Confidence 566665552 2 33333 367799999999999999999985 43 34566665 56655 57999999988
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEC
Q 003115 189 KVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 189 ~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
+.| +....|+++|+=
T Consensus 71 ~~~--------~l~~p~tvmfFf 85 (142)
T KOG3414|consen 71 KMY--------ELYDPPTVMFFF 85 (142)
T ss_pred hhh--------cccCCceEEEEE
Confidence 776 556778887764
No 221
>PRK13191 putative peroxiredoxin; Provisional
Probab=89.37 E-value=2.3 Score=44.78 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=25.6
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
..|.++|+||+|++.+...|-.+- |+ ++.++|+.|..
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~~~~~---gr-~~~eilr~l~a 159 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYYPMEI---GR-NIDEILRAIRA 159 (215)
T ss_pred eeEEEEEECCCCEEEEEEecCCCC---CC-CHHHHHHHHHH
Confidence 369999999999998764442222 22 67787776653
No 222
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.36 E-value=8.8 Score=47.73 Aligned_cols=140 Identities=20% Similarity=0.295 Sum_probs=94.9
Q ss_pred hhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 003115 540 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 617 (846)
Q Consensus 540 Kilt~WNglm--I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~ 617 (846)
+-+-+.+|+. +.||.+-+.+++| ....+.|.+...-|...-.. ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 4455566665 6789999988887 45566666666543322211 12245
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHH
Q 003115 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (846)
+..+-|=++..|+.+|..|.++++++.|..+.+.+.+.....++ .+.+.+- ---|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~g--------fshg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLG--------FSHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceecc--------cccchHHHHHHH
Confidence 55567888999999999999999999999999998876543221 1111111 113566678889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003115 698 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (846)
Q Consensus 698 ~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 729 (846)
+.|+..|++ +.+.+.+.+++..=......
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHH
Confidence 999999996 78888888877665444444
No 223
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.36 E-value=0.99 Score=38.70 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
-++.++|++|+...+ .++ -.+-.|.. +|.++.|+....+ .. .|..+.|..++
T Consensus 3 ly~~~~Cp~C~~ak~-~L~------~~~i~~~~--~di~~~~~~~~~~----~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMTKK-ALE------EHGIAFEE--INIDEQPEAIDYV----KA-QGFRQVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHHHH-HHH------HCCCceEE--EECCCCHHHHHHH----HH-cCCcccCEEEE
Confidence 478899999999764 222 12223444 4555556544433 22 27778999755
No 224
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.29 E-value=1.2 Score=37.92 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=32.4
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC-CCCcEEEECCCCceec
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPLM 218 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~-G~P~~v~l~pdg~~~~ 218 (846)
.-|+.++|++|+...+ .++. .+-.|..+.| ++.++..+.+ ....|.. ++|.. |++ |+.+.
T Consensus 3 ~ly~~~~Cp~C~~ak~-~L~~------~~i~~~~i~i--~~~~~~~~~~----~~~~~~~~~vP~v-~i~--g~~ig 63 (75)
T cd03418 3 EIYTKPNCPYCVRAKA-LLDK------KGVDYEEIDV--DGDPALREEM----INRSGGRRTVPQI-FIG--DVHIG 63 (75)
T ss_pred EEEeCCCChHHHHHHH-HHHH------CCCcEEEEEC--CCCHHHHHHH----HHHhCCCCccCEE-EEC--CEEEe
Confidence 4588999999999664 2222 2334555444 4444433222 1223544 88965 444 45553
No 225
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=88.95 E-value=67 Score=39.55 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
+-|.|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 380 ~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 380 VDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred chhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 34788899888776 334566788999999999998 8899999843
No 226
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.90 E-value=1.1 Score=40.03 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=33.8
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~--~G~P~~v~l~pdg~~~~ 218 (846)
++-++.+||++|+.+.+ .+++-.+. ...+....+|.++.....+. +...+|. ..+|..+ + +|+.+.
T Consensus 2 V~vys~~~Cp~C~~ak~-~L~~~~~~---~~~i~~~~idi~~~~~~~~~----l~~~~g~~~~tVP~if-i--~g~~ig 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQ-LAEKLAIE---RADFEFRYIDIHAEGISKAD----LEKTVGKPVETVPQIF-V--DEKHVG 69 (86)
T ss_pred EEEEeCCCCccHHHHHH-HHHHhCcc---cCCCcEEEEECCCCHHHHHH----HHHHhCCCCCCcCeEE-E--CCEEec
Confidence 34579999999999774 33221110 01244455666533211121 2223354 5789885 3 455543
No 227
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.76 E-value=16 Score=43.24 Aligned_cols=285 Identities=16% Similarity=0.121 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh
Q 003115 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (846)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~ 460 (846)
.|=+.+..|.-||..+|++.|+.-|.++.+=|+--+.-|.|-=++.++..|. -+.=|.|...-.. +|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG---------~~~n~~wasgg~S-IL--- 329 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSG---------DADNYGWASGGSS-IL--- 329 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccC---------ccCCcccccCcch-Hh---
Confidence 3667888888899999999999999999999998888888877777776552 1333445421000 11
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCH-HHHHHHHHHHHHHHHhhhcCCCCC-CCC
Q 003115 461 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL-EKYLNILGECRRKLFDVRSKRPRP-HLD 538 (846)
Q Consensus 461 ~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~-~~l~~~l~~~r~~L~~~R~~R~~P-~~D 538 (846)
.+.|. ||+.. .-+++..|.+. .+....|....+++..+- -..| ++-
T Consensus 330 ----------aE~gt------------------lhlef--~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~--GLypnYin 377 (625)
T KOG2204|consen 330 ----------AEFGT------------------LHLEF--SYLSKLTGNPTFAEKVVKIRKVLNKSEKPH--GLYPNYIN 377 (625)
T ss_pred ----------hhcCc------------------eeeeh--HHhhhccCCchHHHHHHHHHHHHHhhcCCC--CCCccccc
Confidence 11222 11111 11333344433 333334444444443211 0111 111
Q ss_pred chhhhchHHHHHH----------HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE
Q 003115 539 DKVIVSWNGLVIS----------SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH 606 (846)
Q Consensus 539 dKilt~WNglmI~----------ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~--G~l~~ 606 (846)
..-. -|--.+.+ =|.++.-..+. ++.++..+=.++...+.+++..... |..|-
T Consensus 378 P~sg-~wgq~~tslg~lgDSfyeyllK~wl~s~k--------------Td~eak~my~~am~Ai~~~li~~S~~s~ltyi 442 (625)
T KOG2204|consen 378 PSSG-EWGQHHTSLGALGDSFYEYLLKAWLQSDK--------------TDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYI 442 (625)
T ss_pred CCCC-chhhHHhHHhhhhhhHHHHHHHHHhhcCC--------------cchHHHHhHHHHHHHHHhhheeccCCCCeEEE
Confidence 1111 23222221 34444444332 2345555556666666666654333 33444
Q ss_pred E-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCC----CcccccCCCCCcccc
Q 003115 607 S-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG----GGYFNTTGEDPSVLL 676 (846)
Q Consensus 607 ~-~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~----Ggyf~t~~~~~~l~~ 676 (846)
+ +..|.. .--..-.|.+.-|++.|..+.++. .|++.+.++...+.+-|....+ +.|+++.. ++...+
T Consensus 443 ~e~~~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~~~ 519 (625)
T KOG2204|consen 443 SEWNGGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAFAV 519 (625)
T ss_pred EecCCCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchhhh
Confidence 3 444432 111233477778888888888774 5999999999999887754322 23444432 333333
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 003115 677 RVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 736 (846)
Q Consensus 677 R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 736 (846)
|..+.+ -+-- ...++.+.-|.++|++ +.||+-+-+.++++-. ..+...|+..
T Consensus 520 r~~Esy--yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek-~cr~~~G~~g 571 (625)
T KOG2204|consen 520 RKVESY--YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEK-YCRVAKGYSG 571 (625)
T ss_pred hcccce--eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHH-hcccccchhh
Confidence 332221 1111 2467888899999997 7899999888766433 2234444444
No 228
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.59 E-value=1 Score=46.93 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
.|.++|+||+|++.+...|-... |+ .+.++|+.|.
T Consensus 117 ~r~~fiID~~G~I~~~~~~~~~~---gr-~~~ell~~l~ 151 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYYPATT---GR-NFDEILRVVD 151 (203)
T ss_pred eeEEEEECCCCeEEEEEecCCCC---CC-CHHHHHHHHH
Confidence 35689999999988765442111 22 4666665554
No 229
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.44 E-value=1.2 Score=45.83 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=44.5
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC----CccHHHHHHHHHHHhcCCCCCCc
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE----RPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee----~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
..+.=.||+|+|.|.|+||+.|..|.. + .++.+... +.|+.|=+..++ .|+-.....++++. ..|++.
T Consensus 19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~~--L--~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~---~~g~~F 91 (183)
T PRK10606 19 TLEKYAGNVLLIVNVASKCGLTPQYEQ--L--ENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRT---TWGVTF 91 (183)
T ss_pred eHHHhCCCEEEEEEEeCCCCCcHHHHH--H--HHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHH---ccCCCc
Confidence 344456899999999999999976552 2 23444443 468888776532 22222233334431 124444
Q ss_pred EEE--ECCCCc
Q 003115 207 SVF--LSPDLK 215 (846)
Q Consensus 207 ~v~--l~pdg~ 215 (846)
-++ ++-+|.
T Consensus 92 pv~~k~dvnG~ 102 (183)
T PRK10606 92 PMFSKIEVNGE 102 (183)
T ss_pred eeEEEEccCCC
Confidence 455 777665
No 230
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=88.39 E-value=0.95 Score=39.26 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
-++.+||++|+...+ .|+. .+=.|..+ |.++.|...+.+ +..+|..++|+.++ + |+.+
T Consensus 3 ly~~~~Cp~C~~a~~-~L~~------~~i~~~~~--di~~~~~~~~~~----~~~~g~~~vP~i~i-~--g~~i 60 (79)
T TIGR02181 3 IYTKPYCPYCTRAKA-LLSS------KGVTFTEI--RVDGDPALRDEM----MQRSGRRTVPQIFI-G--DVHV 60 (79)
T ss_pred EEecCCChhHHHHHH-HHHH------cCCCcEEE--EecCCHHHHHHH----HHHhCCCCcCEEEE-C--CEEE
Confidence 478899999999764 3322 22235544 444455443333 33457889999744 3 4544
No 231
>PLN02993 lupeol synthase
Probab=87.64 E-value=4.5 Score=50.23 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---Ch
Q 003115 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 399 (846)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~--~W~--vP---HFEKMLyD------NA~Ll~~ya~Ay~~t~---~~ 399 (846)
+.+.-+...|-.|.. -+|||.-|-.++ .|. +| ||+..+.| -+..|.++..-..... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 444445555555654 479999999766 775 55 45566655 4555555554322111 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 003115 400 FYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 400 ~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
.....++++++||.+ .+.++|++|.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 346788999999997 5788998873
No 232
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=87.60 E-value=49 Score=36.44 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r 414 (846)
+++.+++....+++.. |-+-+|||- .|. +-+=-....|..+.++.+|.+.. +.-..+.+++++||++
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~------~w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYA------AWK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCcc------CCC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4677888888887765 566789994 242 11344567899999999997654 2335789999999998
Q ss_pred hccCCCCcee
Q 003115 415 DMIGPGGEIF 424 (846)
Q Consensus 415 ~m~~~~Ggfy 424 (846)
. +.++|+|-
T Consensus 115 ~-Q~~dG~f~ 123 (297)
T cd02896 115 N-QKPDGSFQ 123 (297)
T ss_pred c-CCCCCeeC
Confidence 6 88889884
No 233
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=87.48 E-value=52 Score=38.00 Aligned_cols=302 Identities=16% Similarity=0.216 Sum_probs=165.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCcccc-----ccccccCCce
Q 003115 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETE-----GATRKKEGAF 445 (846)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~-----~~~~~~EGay 445 (846)
.|--||-.+- ++.-+.-||-++|+..|++.|.+--+=|+.-+..|.+==||.+.-++...+ ++.-.-|=.-
T Consensus 170 ~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvtt 245 (546)
T KOG2431|consen 170 DVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTT 245 (546)
T ss_pred ceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhhee
Confidence 4777887765 777788899999999999999999999998888888777775543221111 1101111111
Q ss_pred EEecHHHHHHHhhhh-----H-HHHHHHhcccC---CCCcCCCCCCCCC-CCCCCcceeeccCCchHHHH-------HcC
Q 003115 446 YVWTSKEVEDILGEH-----A-ILFKEHYYLKP---TGNCDLSRMSDPH-NEFKGKNVLIELNDSSASAS-------KLG 508 (846)
Q Consensus 446 Y~wt~~Ei~~~L~~~-----~-~~~~~~f~i~~---~Gn~e~~~~~d~~-g~feg~nvL~~~~~~~~~a~-------~~g 508 (846)
---...++..+.|+. + ......+++.. +|-|.. ..+|+ |.|.|.+|-.....+ .+-+ +.|
T Consensus 246 iQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi--~in~~tG~F~~~tI~lGaRgD-SyYEYLlKQwlQtg 322 (546)
T KOG2431|consen 246 IQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI--FINPNTGLFVGSTITLGARGD-SYYEYLLKQWLQTG 322 (546)
T ss_pred eeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE--EEcCCCCccccceEEeccccc-hHHHHHHHHHHHcc
Confidence 112233444555532 1 23334455532 343322 24554 788887664433322 2222 123
Q ss_pred CCH----HHHHHHHHHHHHHHHhhhc-------------CCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccC
Q 003115 509 MPL----EKYLNILGECRRKLFDVRS-------------KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNF 571 (846)
Q Consensus 509 ~~~----~~l~~~l~~~r~~L~~~R~-------------~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~ 571 (846)
-+. +...+.++..++.|+..-. .+..|-.|-- + +++--.|+-.+ .-|=
T Consensus 323 ~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHL-V----CFlpGtL~lG~-~~Gl--------- 387 (546)
T KOG2431|consen 323 KSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHL-V----CFLPGTLALGS-TNGL--------- 387 (546)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceE-E----Eeecchhhhcc-ccCC---------
Confidence 232 3444566777777776332 2344555533 1 12211222211 1110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccCCCe---EEEE-ecCC--CCCC-CCCcchH----HHHHHHHHHHHHHcCCHH
Q 003115 572 PVVGSDRKEYMEVAESAASFIRRHLYDEQTHR---LQHS-FRNG--PSKA-PGFLDDY----AFLISGLLDLYEFGSGTK 640 (846)
Q Consensus 572 ~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~---l~~~-~~dg--~~~~-~~~leDy----A~~i~aLl~LYe~Tgd~~ 640 (846)
|. ..+-++.|+++.+...+......+|. +.+. ..+. +.++ .+-+|-+ -..++++.-||++|+|.+
T Consensus 388 ~~----~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~k 463 (546)
T KOG2431|consen 388 PA----SEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRK 463 (546)
T ss_pred Cc----chHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCch
Confidence 00 13588999999999877653333453 2222 1111 1111 1223333 368999999999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 641 WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 641 yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
|.++.-++++.+.+.- .-.+|||-+-.+-. ....+.++- -...-+++-|--|+-+.++
T Consensus 464 YqewGW~if~sfekyt-rv~~ggytSi~nV~-~~~~~~RDk------MESF~laETLKYLYLLf~D 521 (546)
T KOG2431|consen 464 YQEWGWEIFQSFEKYT-RVPSGGYTSIDNVK-DQKPKRRDK------MESFWLAETLKYLYLLFSD 521 (546)
T ss_pred HHHHhHHHHHHHHHhc-ccCCCCccchhhhh-hcCCchhhh------HHHHHHHHHHHHHHHhhcC
Confidence 9999999999987654 33457776654311 111222111 1123577778888888875
No 234
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.13 E-value=1.7 Score=38.58 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=32.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.-++.+||++|+...+ .|+. .+=.|. .+|.++.|+....+ +. .|....|+.++
T Consensus 4 ~lYt~~~Cp~C~~ak~-~L~~------~gI~~~--~idi~~~~~~~~~~----~~-~g~~~vPvv~i 56 (81)
T PRK10329 4 TIYTRNDCVQCHATKR-AMES------RGFDFE--MINVDRVPEAAETL----RA-QGFRQLPVVIA 56 (81)
T ss_pred EEEeCCCCHhHHHHHH-HHHH------CCCceE--EEECCCCHHHHHHH----HH-cCCCCcCEEEE
Confidence 3478899999998764 3321 111344 45665566543332 22 37788999976
No 235
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=87.04 E-value=2.4 Score=46.97 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcchHH
Q 003115 547 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDDYA 623 (846)
Q Consensus 547 glmI~ALa~A~-~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~leDyA 623 (846)
+=++.+|++++ +.+++ +++.+.+.++.+++.++....+++ +... +..... ..+..++-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPDN-RNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---SE-CTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCCC-CCccccccccccccCcH
Confidence 44577888888 57776 789999999999999888543333 3221 111100 345666667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (846)
=.+.+++.+++..+++.+.+.++++.+.+.+.-. +.. +...==|++=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7888999999999999999999988888765310 000 112233566677788899999
Q ss_pred hCCCCchHHHHHHHHHHHHH
Q 003115 704 VAGSKSDYYRQNAEHSLAVF 723 (846)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~ 723 (846)
+++ +.|.+.++++++.+
T Consensus 290 ~~~---~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKL 306 (355)
T ss_dssp H-----HCCHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHH
Confidence 986 66888888775554
No 236
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=86.81 E-value=0.79 Score=39.93 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=34.2
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE-cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003115 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV-DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv-D~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
+.+++|+.|..+.+.. .++++.++ +.+.+ |.++.+++ ..| |..+.|+.++ ||+.++.|
T Consensus 5 v~~~~C~~C~~~~~~~---~~~~~~~~---i~~ei~~~~~~~~~-~~y--------gv~~vPalvI---ng~~~~~G 63 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLL---KEAAEELG---IEVEIIDIEDFEEI-EKY--------GVMSVPALVI---NGKVVFVG 63 (76)
T ss_dssp EECSSCTTHHHHHHHH---HHHHHHTT---EEEEEEETTTHHHH-HHT--------T-SSSSEEEE---TTEEEEES
T ss_pred EeCCCCCCcHHHHHHH---HHHHHhcC---CeEEEEEccCHHHH-HHc--------CCCCCCEEEE---CCEEEEEe
Confidence 3566799999887622 34444443 43333 44433444 444 8889999966 57777654
No 237
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=86.49 E-value=6.4 Score=38.39 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=52.3
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+++|.|.|-||.+|=+.|..|++-. ..+++.+.+-.+..-||+++-|+..+.| ... -|.+|++==.+
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL---~~~a~~v~~~a~IY~vDi~~Vpdfn~~y--------el~-dP~tvmFF~rn 84 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEIL---YKIAEKVKNFAVIYLVDIDEVPDFNQMY--------ELY-DPCTVMFFFRN 84 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTTHCCHHHT--------TS--SSEEEEEEETT
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHH---HHHHHHhhcceEEEEEEcccchhhhccc--------ccC-CCeEEEEEecC
Confidence 47899999999999999999999633 3456777655666679999999988877 333 78888775445
Q ss_pred cee
Q 003115 215 KPL 217 (846)
Q Consensus 215 ~~~ 217 (846)
+.+
T Consensus 85 khm 87 (133)
T PF02966_consen 85 KHM 87 (133)
T ss_dssp EEE
T ss_pred eEE
Confidence 544
No 238
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=86.44 E-value=30 Score=42.56 Aligned_cols=116 Identities=15% Similarity=0.207 Sum_probs=62.4
Q ss_pred cccCCCCCCC--CC-CCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCC--
Q 003115 297 DSRFGGFGSA--PK-FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH-- 371 (846)
Q Consensus 297 D~~~GGfg~a--pK-FP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~-- 371 (846)
+...||+|-. +. +|....-...|........ ........+.+-+..-|-.|.. -+|||--|..+....
T Consensus 362 ~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~-~~~~~~~~~i~ra~~wLl~~Qn------~dGgw~af~~~~~~~~l 434 (635)
T TIGR01507 362 NLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRL-PDERRRRDAMTKAFRWIAGMQS------SNGGWGAFDVDNTSDLL 434 (635)
T ss_pred CCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCC-CccccchHHHHHHHHHHHHhcC------CCCCEecccCCcchhHH
Confidence 4568998875 76 4654322222222211110 0000112344444445555644 579997665544322
Q ss_pred --CCCCc---hhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 372 --VPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 372 --vPHFE---KML-----yDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
+| |. .|+ -+-|+.+.+|.... ...-...++++++||++ ++.++||+|.
T Consensus 435 ~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~g----~~~~~~~i~rav~~L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 435 NHIP-FCDFGAVTDPPTADVTARVLECLGSFG----YDDAWPVIERAVEYLKR-EQEPDGSWFG 492 (635)
T ss_pred hcCC-ccccccccCCCCccHHHHHHHHHHHhC----CCchhHHHHHHHHHHHH-ccCCCCCCcc
Confidence 34 32 221 12677888887642 21126788999999997 6788998864
No 239
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=86.25 E-value=94 Score=38.28 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=41.0
Q ss_pred CCCcEEEEE-cCCCCCCCCCchhHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 357 VGGGFHRYS-VDERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 357 vgGGF~RYs-vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~---~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
-.||+. |+ .+..|.+. -|-|..+.++..+..... ++...+..+++++||++ |++++|||.+
T Consensus 357 ~~GGW~-f~~~~~~~pds------D~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 357 AKGGWC-FSDGDHGWPVS------DCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCccc-cccCCCCCCcc------ccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 457776 45 45666542 357777777766644321 22455788999999996 8999999975
No 240
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=86.24 E-value=4.5 Score=46.18 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc
Q 003115 584 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 663 (846)
Q Consensus 584 ~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg 663 (846)
...++-+|+.+++.-..++ .. .+.|--.=++-|||.+|.++|+.-||++|++|.+.+..-|-.+ ++-
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~V---NlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sp-s~I 217 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------DV---NLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSP-SPI 217 (546)
T ss_pred HHHHHHHHHHhhccccccc---------ce---ehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCC-CCC
Confidence 3455667777766321111 11 2223345567899999999999999999999999999999443 333
Q ss_pred ccccCCCCCcccccccCCCCCCCCChHHHHH---HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003115 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV---INLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (846)
Q Consensus 664 yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a---~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 726 (846)
=|+.-.-+...-..++-.. -|..|... ..+-.|+++||+ +.|.+.|+++.+.+...
T Consensus 218 PysdVnL~~~~A~~p~~~~----~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 218 PYSDVNLGTGTAHPPRWTG----DSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHGL 276 (546)
T ss_pred CcceeecCCCcccCCCCCC----ccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhcc
Confidence 3322211111001111001 12222211 125579999996 78999999888876543
No 241
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.13 E-value=14 Score=43.70 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=76.9
Q ss_pred CCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----
Q 003115 537 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP---- 612 (846)
Q Consensus 537 ~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~---- 612 (846)
.....+.+|....|..+.+.|+.+||... ..++....++..+++..+..+...+...+.+-|..
T Consensus 197 ~~~~~~~~w~l~~i~~~~~~y~~tGD~~~------------l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~ 264 (509)
T PF05592_consen 197 GGGFGIPDWSLAWIIIPWDYYLYTGDREF------------LEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGN 264 (509)
T ss_dssp SSGGGBHHHHHHHHHHHHHHHHHHT-HHH------------HHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccC
Confidence 46777889999999999999999999421 25677888888888887664300111112222222
Q ss_pred ---CCCCCCcch---HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcc
Q 003115 613 ---SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 664 (846)
Q Consensus 613 ---~~~~~~leD---yA~~i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (846)
.......-. |..++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 265 DGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 111222222 455666688888999985 7999999999999999999887744
No 242
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=86.06 E-value=0.91 Score=49.90 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 384 ~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
.-+..++++|+.++++.|++.+.++++||+. |+.|+||+-
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 3466788999999999999999999999997 889999984
No 243
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=85.08 E-value=8.7 Score=42.75 Aligned_cols=142 Identities=11% Similarity=-0.002 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHH
Q 003115 580 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 645 (846)
Q Consensus 580 ~yLe~A~~~a~~l~~~l~d------------~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tg--d~~yL~~A 645 (846)
++-+...++.+||.++... ..+|++-.....+ .....++-++++.+|+.+.+.+. +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999887621 1122221111110 01224588999999999988873 46667777
Q ss_pred HHHHHHHHHHccccCCCcccccCCC-CCccc-----ccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003115 646 IELQNTQDELFLDREGGGYFNTTGE-DPSVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (846)
Q Consensus 646 ~~L~~~~~~~F~D~~~Ggyf~t~~~-~~~l~-----~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 719 (846)
.+..+.+.... .+ +|+|...... ....+ .......|...|+..+..+..|..+.....+. ..++.+.+++.
T Consensus 120 ~~a~~~L~~~Q-~~-dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQ-NS-NGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhc-cC-CCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 77777777664 23 4666432111 00000 00111223445566667777777666543221 12455666677
Q ss_pred HHHHHHHH
Q 003115 720 LAVFETRL 727 (846)
Q Consensus 720 l~~~~~~i 727 (846)
++.+....
T Consensus 197 ~~~L~~~q 204 (348)
T cd02889 197 VKYLEREQ 204 (348)
T ss_pred HHHHHHhC
Confidence 77765543
No 244
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=2.7 Score=37.27 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=32.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
+-|+-++|+||+...+ +|++ .|..|.++.++..+ .+.+.+..+|+...|.+++
T Consensus 4 ~iyt~~~CPyC~~ak~----------~L~~~g~~~~~i~~~~~~~~~----~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 4 TIYTKPGCPYCKRAKR----------LLDRKGVDYEEIDVDDDEPEE----AREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEECCCCchHHHHHH----------HHHHcCCCcEEEEecCCcHHH----HHHHHHHhCCCCCcCEEEE
Confidence 4478899999999664 3433 45555555443212 2223344457888998765
No 245
>PRK13189 peroxiredoxin; Provisional
Probab=84.44 E-value=3.2 Score=44.01 Aligned_cols=37 Identities=22% Similarity=0.086 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
..|.++|+||+|++.+...|-.+. | ..+-++|+.|..
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~~~~~---g-r~~~eilr~l~a 161 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYYPQEV---G-RNMDEILRLVKA 161 (222)
T ss_pred ceeEEEEECCCCeEEEEEecCCCC---C-CCHHHHHHHHHH
Confidence 579999999999987654332221 1 256666666543
No 246
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=84.44 E-value=14 Score=42.21 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 586 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~--G~l~~~~~---dg~~---~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
.++..|-++|+...+. +.+.+.+. +|.. +...-.|.=-+.+.+|+...+..+++.|++.|..|++.|.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4667788888866443 44555542 2321 22333444568999999999999999999999999999998765
Q ss_pred ccCCC-cccccCCCCCcccccccCCCCC--CCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 658 DREGG-GYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 658 D~~~G-gyf~t~~~~~~l~~R~k~~~D~--a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
....| +....+.+.+ . ..+ +. .-|| =.+...+-.++.++++ ..|.+.++...+.+..
T Consensus 154 ~~~~g~g~~LlPG~~g--F--~~~--~~~~~NPS--Y~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG--F--ADD--GSWRLNPS--YLPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc--c--cCC--CCCeECcc--cccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3433332210 0 000 11 1122 2355567778888875 5688888877777654
No 247
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=84.40 E-value=23 Score=42.95 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=70.6
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----EecCC--
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNG-- 611 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~-----l~d~~~G~l~~----~~~dg-- 611 (846)
.+-.-+.|.|+.+.++.++|... ..++...++++.+...+. ..|+ +|.++. +|.|.
T Consensus 347 vDAtLWfi~al~~Y~~~tgD~~~------------l~~l~p~l~~ii~~y~~G~~~~i~~d~-dGLi~~g~~lTWMDa~~ 413 (575)
T TIGR01561 347 VDASLWAIHAIDKTFAYSQDFLF------------IRDVVDKVLDIIDNYCAGNDFAIGMDN-DLIFHKGAPLTWMDAKV 413 (575)
T ss_pred chHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHhcCCCcEEEECC-CccEeCCCCCCCCCCCC
Confidence 34446778999999999988311 134445555555543331 1232 343332 24443
Q ss_pred -----CCCCCCCcchHHHHHHHHHH---HHHHcCC--HHHHHHHHHHHHHHHHHccccCCCcccccC
Q 003115 612 -----PSKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (846)
Q Consensus 612 -----~~~~~~~leDyA~~i~aLl~---LYe~Tgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (846)
.|...+..|-+|..-.||.. +.+..|+ ..|.+.|+++.+.+.+.||+++.|.+|+.-
T Consensus 414 g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v 480 (575)
T TIGR01561 414 DERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDLI 480 (575)
T ss_pred CCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 12223677888877766655 5666666 468899999999999999998766666643
No 248
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=84.17 E-value=3.3 Score=44.98 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC--ccHHHHH--HHHHHHhcCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGG 203 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~--p~~~~~y--~~~~~~~~g~~G 203 (846)
++++...+ +-=|+.|+.+.|+.||.|. |-|..+-++ +|-.+-|+.+.. |.+...- ....+.+ |+.-
T Consensus 143 ~~i~~la~--~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~ 213 (256)
T TIGR02739 143 KAIQQLSQ--SYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKY 213 (256)
T ss_pred HHHHHHHh--ceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCcc
Confidence 34444443 4667779999999999987 455555555 344444444432 3321100 0111222 6677
Q ss_pred CCcEEEECCCCcee
Q 003115 204 WPLSVFLSPDLKPL 217 (846)
Q Consensus 204 ~P~~v~l~pdg~~~ 217 (846)
+|++++++|+.+.+
T Consensus 214 ~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 214 FPALYLVNPKSQKM 227 (256)
T ss_pred CceEEEEECCCCcE
Confidence 99999999995543
No 249
>PLN03012 Camelliol C synthase
Probab=83.04 E-value=72 Score=39.98 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=37.2
Q ss_pred CcEEEEE-cCCCCCCCCCchhHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 359 GGFHRYS-VDERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 359 GGF~RYs-vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay----~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
||+. +| .|..|.+.. |-|..+.+..-.. ...+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~-Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWT-FSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred Cccc-ccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 6655 34 477777653 3444443311111 122355667889999999997 9999999965
No 250
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=82.90 E-value=4.3 Score=43.89 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-C--eEEEEEcCCCCccHHHH--HHHHHHHhcCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-W--FVSIKVDREERPDVDKV--YMTYVQALYGGG 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~--FV~vkvD~ee~p~~~~~--y~~~~~~~~g~~ 202 (846)
+++++...++ -=|+.|+.+.|+.||.|. |-|..+-++ + .++|.+|---.|.+... -....+. .|+.
T Consensus 135 ~~~i~~la~~--~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~ 205 (248)
T PRK13703 135 RQAIAKLAEH--YGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR-LGVK 205 (248)
T ss_pred HHHHHHHHhc--ceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh-cCCc
Confidence 3445555544 556669999999999987 455555555 3 44555554222221100 0001111 2666
Q ss_pred CCCcEEEECCCCcee
Q 003115 203 GWPLSVFLSPDLKPL 217 (846)
Q Consensus 203 G~P~~v~l~pdg~~~ 217 (846)
-+|.+++++|+.+.+
T Consensus 206 ~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 206 YFPALMLVDPKSGSV 220 (248)
T ss_pred ccceEEEEECCCCcE
Confidence 799999999986433
No 251
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.73 E-value=2.3 Score=49.24 Aligned_cols=63 Identities=6% Similarity=0.084 Sum_probs=35.9
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEE-EEcCCCCccHHHHHHHH----HHHhcCCCCCCcEEEECCCCce
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~v-kvD~ee~p~~~~~y~~~----~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
++-++.+||+||+...+ +|+++=|+. .+|.++.+.....+.+. +...+|...+|+++| +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~----------~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKS----------WFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHH----------HHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEE
Confidence 34589999999998763 555432222 34555666544332221 112246678899866 4454
Q ss_pred e
Q 003115 217 L 217 (846)
Q Consensus 217 ~ 217 (846)
+
T Consensus 71 i 71 (410)
T PRK12759 71 I 71 (410)
T ss_pred E
Confidence 4
No 252
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=81.60 E-value=4.8 Score=34.27 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=33.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+-|+.+||++|+...+ .++ ..+-.|..+ |.++.++. + ..+..+|...+|.. |++ |+.+
T Consensus 4 ~lys~~~Cp~C~~ak~-~L~------~~~i~~~~~--~v~~~~~~-~----~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 4 SLFTKPGCPFCARAKA-ALQ------ENGISYEEI--PLGKDITG-R----SLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred EEEECCCCHHHHHHHH-HHH------HcCCCcEEE--ECCCChhH-H----HHHHHhCCCCcCeE-EEC--CEEE
Confidence 4478999999999743 222 223245444 44444432 1 22334577889986 555 4444
No 253
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=81.23 E-value=1e+02 Score=34.71 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~-~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
+..++.-+...+|+.++-.. +|-+.-+- +++.+.- -...+--=++..|..+|++.++++||+.|.+..+.++++=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 45778888889998876533 34343221 1111100 00011122577899999999999999999999998875422
Q ss_pred ccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003115 658 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 718 (846)
Q Consensus 658 D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~ 718 (846)
=+.+ ...-++ -+||+ -.++.|+++|++ .+|..||.+
T Consensus 318 Lkkg-----------------~GichG--vaGNa---YvFLsLyRLT~d---~kYlyRA~k 353 (403)
T KOG2787|consen 318 LKKG-----------------VGICHG--VAGNA---YVFLSLYRLTGD---MKYLYRAKK 353 (403)
T ss_pred hhcC-----------------Cccccc--ccCch---hhhHhHHHHcCc---HHHHHHHHH
Confidence 1111 011111 35665 456778999986 899999973
No 254
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=81.12 E-value=28 Score=41.37 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (846)
.+++...-||++|+|+-||+.-+++.+.++..++-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 58999999999999999999999999999887754
No 255
>PRK10137 alpha-glucosidase; Provisional
Probab=80.49 E-value=1.7e+02 Score=36.93 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 003115 623 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (846)
Q Consensus 623 A~~i---~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (846)
+++. ..|.++++..|++ +|.++|..+.+.+.+.|||++.|.||+-.
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6677788888875 48889999999999999999998888654
No 256
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=80.00 E-value=1e+02 Score=34.30 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=66.6
Q ss_pred HHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE
Q 003115 525 LFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL 604 (846)
Q Consensus 525 L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l 604 (846)
+......+...-+|+.. ..--|.-|+++++.+++ +.|.+++.+..+||+...+. +||+
T Consensus 29 ~~~~~~~~~~~TiDN~a----T~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGW 86 (290)
T TIGR02474 29 VKNGGGGNESGTIDNGA----TVTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGW 86 (290)
T ss_pred hccccCCCCcccccCcc----HHHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCc
Confidence 33333335667788771 12337789999999887 78999999999999988775 5666
Q ss_pred EEEecCCC-CCCCCCcchHH--HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHccc
Q 003115 605 QHSFRNGP-SKAPGFLDDYA--FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 605 ~~~~~dg~-~~~~~~leDyA--~~i~aLl~LYe~Tgd-----~~yL~~A~~L~~~~~~~F~D 658 (846)
-..+.... -...-+.+|.+ .++..|.++++..++ ...++++....+..++.+..
T Consensus 87 PQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 87 PQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred CcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 54432211 11223344544 567777777764432 22334444444444444433
No 257
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=0.8 Score=48.21 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=51.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
.+|++++.|.+.||..|+.|+. +|. .+++.. ++...+|++.++.|++-..+ ...+.|+.++.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~-v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~--------~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQ-VFD--HLAEYF-KNAQFLKLEAEEFPEISNLI--------AVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHH-HHH--HHHHhh-hhheeeeehhhhhhHHHHHH--------HHhcCceeeee
Confidence 6899999999999999999985 553 445555 78899999999999998776 34578998877
No 258
>PLN02993 lupeol synthase
Probab=79.41 E-value=93 Score=39.07 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=38.5
Q ss_pred CcEEEEE-cCCCCCCCCCchhHHHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 359 GGFHRYS-VDERWHVPHFEKMLYDQGQLANVYLDAFSL----TKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 359 GGF~RYs-vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~----t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
||+. +| .|..|.+-. |-|..+.+..-..+. .+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~-Fs~~~~gyp~sD------dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGG~aa 534 (763)
T PLN02993 471 GAWT-LSDRDHGWQVSD------CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLS-LQSENGGVTA 534 (763)
T ss_pred CcCc-CccCCCCCCcCC------chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHh-hccCCCCEEe
Confidence 6665 34 466777653 456555532222222 2356677899999999997 9999999965
No 259
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=79.03 E-value=2.1 Score=47.05 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=34.7
Q ss_pred hhHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 377 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 377 KMLyDNA---~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
+.-+||. .-|..++++|+.++|+.|++.+.+.++||+. .+-|+||+-
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4445643 4577789999999999999999999999996 667899973
No 260
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=78.97 E-value=51 Score=37.63 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 657 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~----- 657 (846)
+.|+.+...+.+... +|.+-+....|....-+..|---+++.++-++++.|+|..+++......+.+++.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455555555544442 577777776665444455677788999999999999999999777665555555442
Q ss_pred ----ccCCCcccccCCCCCcccccccCCC---------CCCCCChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHH
Q 003115 658 ----DREGGGYFNTTGEDPSVLLRVKEDH---------DGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLA 721 (846)
Q Consensus 658 ----D~~~Ggyf~t~~~~~~l~~R~k~~~---------D~a~PS~Nsv~a~~L~rL~~lt~---~~~~~~y~~~A~~~l~ 721 (846)
|+++| +...... ..-.-+++.. +++.-.-|+.+..+|..++.+.. ++...+|++.|+++-+
T Consensus 127 ~~~~d~~~g-l~~~~~~--~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~ 203 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNG--LNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKE 203 (370)
T ss_pred ccccccCCC-eeecCCC--CCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 22222 2221110 0001111111 11222345556666666565544 2123578888888888
Q ss_pred HHHHHH
Q 003115 722 VFETRL 727 (846)
Q Consensus 722 ~~~~~i 727 (846)
.|....
T Consensus 204 ~F~~~F 209 (370)
T PF06202_consen 204 SFEKRF 209 (370)
T ss_pred HHHHHH
Confidence 887755
No 261
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=78.55 E-value=91 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003115 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 416 (846)
Q Consensus 337 ~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m 416 (846)
...++.++++.+.. .. +.+|||--+.... +-..++-+..+.++..+.... +......+++++||.+.
T Consensus 50 ~~~~~~~~~~~l~~--~q-~~dG~~~~~~~~~-------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~- 116 (300)
T cd00688 50 ADENIEKGIQRLLS--YQ-LSDGGFSGWGGND-------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL- 116 (300)
T ss_pred chHHHHHHHHHHHh--cc-CCCCCccCCCCCC-------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc-
Confidence 34555555555544 11 4678886321111 444566777888777655433 45677889999999975
Q ss_pred cCCCCceee
Q 003115 417 IGPGGEIFS 425 (846)
Q Consensus 417 ~~~~Ggfys 425 (846)
+.++|||..
T Consensus 117 q~~dG~~~~ 125 (300)
T cd00688 117 QNEDGGFRE 125 (300)
T ss_pred cCCCCCeee
Confidence 667788754
No 262
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.40 E-value=5.2 Score=38.37 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=34.5
Q ss_pred HHHHHHHHh---cCCCEEEEEec--------cCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCcc
Q 003115 128 EEAFAEARK---RDVPIFLSIGY--------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPD 186 (846)
Q Consensus 128 ~eAl~~Ak~---e~KpI~l~~g~--------~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~ 186 (846)
.+.|++..+ .||-||+.|.+ +||+.|.+-| |-|.+.++ ++-..|.|++-+||-
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AE------Pvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAE------PVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhh------HHHHHHHHhCCCceEEEEEEecCCCc
Confidence 444544432 35669999854 5999999865 45555565 456667777776653
No 263
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=78.10 E-value=56 Score=40.11 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCC--C--CC-CC--CchhH-----H-HHHHHHHHHHHHHHccCChHHH
Q 003115 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDER--W--HV-PH--FEKML-----Y-DQGQLANVYLDAFSLTKDVFYS 402 (846)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~--W--~v-PH--FEKML-----y-DNA~Ll~~ya~Ay~~t~~~~y~ 402 (846)
..++-+..-|..|.. -+|||-.|..++. | .+ |+ |..++ . ..++.|.++..+. .+.+.+.
T Consensus 388 ~~l~~a~~~Ll~~Qn------~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~--~r~~~~~ 459 (621)
T TIGR01787 388 DRLRDAVNWILGMQS------SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG--HRADEIR 459 (621)
T ss_pred HHHHHHHHHHHHHcC------CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc--CccHhHH
Confidence 333334444454533 5699998876544 2 12 51 22221 1 2566666665432 1224577
Q ss_pred HHHHHHHHHHHHhccCCCCceee
Q 003115 403 YICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 403 ~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
+.++++++||++ .+.++|+||.
T Consensus 460 ~~i~rAl~~L~~-~Q~~DGsw~g 481 (621)
T TIGR01787 460 NVLERALEYLRR-EQRADGSWFG 481 (621)
T ss_pred HHHHHHHHHHHH-hcCCCCCCcc
Confidence 899999999997 5678888763
No 264
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=77.52 E-value=44 Score=41.17 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC-CCcchHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-GFLDDYAF 624 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~-~~leDyA~ 624 (846)
++++.||..++ +.+.|++..+||.+...+ +|.+++. +-+|++... -.+|-|++
T Consensus 301 a~~a~AL~~~G-----------------------~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~ 355 (648)
T TIGR01535 301 YQVANAFLAAG-----------------------DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAF 355 (648)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHH
Confidence 67788887775 457888999999887754 4555555 468877654 67788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHh
Q 003115 625 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 704 (846)
Q Consensus 625 ~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt 704 (846)
.|.++..+++... ..+....+.+++++.++ +....-+ .+|.-.+.-|+..|....+|.+.+.+.
T Consensus 356 ~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p~p~~d--------------~WEer~g~~~~T~a~v~aaL~~Aa~iA 419 (648)
T TIGR01535 356 PILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GPKTGQE--------------RWEEIGGYSPSTLAAEIAGLTAAADIA 419 (648)
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CCCCCCC--------------cccccCCcCchhHHHHHHHHHHHHHHH
Confidence 9998888888543 45556667777777653 2111101 122223455666666556666555544
Q ss_pred ---CCCC-chHHHHHHHHHHHH
Q 003115 705 ---AGSK-SDYYRQNAEHSLAV 722 (846)
Q Consensus 705 ---~~~~-~~~y~~~A~~~l~~ 722 (846)
|+.. ...|++.|+++-+.
T Consensus 420 ~~~g~~~~a~~w~~~Ad~i~~~ 441 (648)
T TIGR01535 420 EQNGDAGSAQKYRETADNWQKL 441 (648)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 4311 23455555544333
No 265
>PLN03012 Camelliol C synthase
Probab=77.02 E-value=11 Score=46.74 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~---dg~----~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
+..+++.+||++.... +|+...++. +.. .....+..--|+++.||+...+...|+.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5677889999987654 466655532 111 0123556677899999998876666656677666544
No 266
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=76.99 E-value=36 Score=36.48 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.7
Q ss_pred cccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 354 ~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
|-+-+|||.= | -.+-+=-...-|..+..|++|.+...-+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 4456788873 4 3444667888999999999999885433 56789999999998 78888884
No 267
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=76.29 E-value=1.4 Score=51.93 Aligned_cols=71 Identities=21% Similarity=0.410 Sum_probs=48.4
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEE---EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK---VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vk---vD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
|--+|.|+++||+-|+.... +|+. +++-+.+.-=.|+ ||-- +..-++.|... ++.++|+.-++-|+-+
T Consensus 58 ~~~lVEFy~swCGhCr~FAP-tfk~--~A~dl~~W~~vv~vaaVdCA-----~~~N~~lCRef-~V~~~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAP-TFKK--FAKDLEKWRPVVRVAAVDCA-----DEENVKLCREF-SVSGYPTLRYFPPDSQ 128 (606)
T ss_pred hhHHHHHHHhhhhhhhhcch-HHHH--HHHHHhcccceeEEEEeecc-----chhhhhhHhhc-CCCCCceeeecCCccc
Confidence 56789999999999999987 6654 7777765433333 3431 12223344443 8899999999999855
Q ss_pred eec
Q 003115 216 PLM 218 (846)
Q Consensus 216 ~~~ 218 (846)
...
T Consensus 129 ~~~ 131 (606)
T KOG1731|consen 129 NKT 131 (606)
T ss_pred cCc
Confidence 544
No 268
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=74.50 E-value=5.8 Score=42.96 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHccccCCCcc
Q 003115 611 GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGY 664 (846)
Q Consensus 611 g~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~-~L~~~~~~~F~D~~~Ggy 664 (846)
|......+-+|-++++.|+-++|.++| .+++.|. .+.+.+.+-..|..+||+
T Consensus 84 G~l~shdyYDDmaWlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~ 136 (377)
T COG4833 84 GWLNSHDYYDDMAWLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGI 136 (377)
T ss_pred ccccchhhhhhHHHHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcc
Confidence 444566788899999999999999999 7777666 556666676677777764
No 269
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=71.77 E-value=6 Score=46.69 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHH-----
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN----- 696 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~----- 696 (846)
+.-++-||+.+|..|||+-|++.|.++.+.++..|--+.+--+-.+....+. .+... ++ -.|.|+.++.
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~--~~n~~---wa-sgg~SILaE~gtlhl 337 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGD--ADNYG---WA-SGGSSILAEFGTLHL 337 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCc--cCCcc---cc-cCcchHhhhcCceee
Confidence 3445779999999999999999999999999998855432112111110000 11111 11 0123455544
Q ss_pred -HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 697 -LVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 697 -L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
..-|+.+||+ +.|.++...+-+.+..
T Consensus 338 ef~~LS~ltg~---P~~~ekv~~IRk~l~k 364 (625)
T KOG2204|consen 338 EFSYLSKLTGN---PTFAEKVVKIRKVLNK 364 (625)
T ss_pred ehHHhhhccCC---chHHHHHHHHHHHHHh
Confidence 6689999986 8899999887776543
No 270
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=71.51 E-value=73 Score=39.22 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 617 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~---------~~~~ 617 (846)
++++.||++++.. + +++-..-+++.+||.++-.....|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 7889999886532 1 24556778889999877642222211111111111 2234
Q ss_pred CcchHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHccccCCCccc-ccCCCCCccccc--c-----cCCCC
Q 003115 618 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVLLR--V-----KEDHD 683 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tg------d~~yL~~A~~L~~~~~~~F~D~~~Ggyf-~t~~~~~~l~~R--~-----k~~~D 683 (846)
..||-|.++.||+.+..... ..+.+.+|.+.+..+ .++ +|||. +.....+..+-. . .-..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~----Qn~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSR----QNE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHh----cCC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 56888999999998865322 123445555444333 233 35544 222111111000 0 01236
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003115 684 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (846)
Q Consensus 684 ~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 726 (846)
.+.+..++.++..|..+.........++..+..++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 6677777777777776654332100122334455555555443
No 271
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=70.86 E-value=28 Score=42.67 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 357 vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
-+|+|+. .|.+.+ .|..+..+.+++.+.+...+. ..++++++||++. +.++||+.
T Consensus 475 ~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~~-Q~~DGGWg 529 (621)
T TIGR01787 475 ADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLSR-QMPDGGWG 529 (621)
T ss_pred CCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHhh-cCCCCCCC
Confidence 4678764 677653 466777888888765443332 6789999999985 67789884
No 272
>PLN02266 endoglucanase
Probab=70.41 E-value=1.2e+02 Score=36.24 Aligned_cols=125 Identities=10% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CC-------------------CcchHHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PG-------------------FLDDYAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~-------------------~leDyA~~i~aLl~LYe~Tg 637 (846)
+.+|+.++=..+|+++.... +|.+++...++..+. ++ -.+--+.++.+|...+.+-.
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999976643 578888765442111 01 11122345555655565554
Q ss_pred --CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 003115 638 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 711 (846)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~ 711 (846)
|+ +.|+.|+++++.+.++ .|.|....... ...+....=+-.-.++++-..|+..||+ ..
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~y~s~s~~~DEl~WAAawLy~ATGd---~~ 272 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPFYCSYSGYQDELLWGAAWLHKATKN---PT 272 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCCcccCCcchHHHHHHHHHHHHHhCC---HH
Confidence 44 4588888888887642 22231110000 0000000000123567777889999986 78
Q ss_pred HHHHHHHHH
Q 003115 712 YRQNAEHSL 720 (846)
Q Consensus 712 y~~~A~~~l 720 (846)
|.+.++...
T Consensus 273 Yl~~~~~~~ 281 (510)
T PLN02266 273 YLNYIQVNG 281 (510)
T ss_pred HHHHHHHHH
Confidence 998876543
No 273
>PTZ00062 glutaredoxin; Provisional
Probab=69.78 E-value=16 Score=38.42 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCEEEEE-ec---cCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 130 AFAEARKRDVPIFLSI-GY---STCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~-g~---~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
-+++.-+ .+||+|.. |. ++|++|+.+.. +|++ .|. .+|.++++++.+.. ..++|..
T Consensus 105 ~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~----------~L~~~~i~y~--~~DI~~d~~~~~~l----~~~sg~~ 167 (204)
T PTZ00062 105 KIERLIR-NHKILLFMKGSKTFPFCRFSNAVVN----------MLNSSGVKYE--TYNIFEDPDLREEL----KVYSNWP 167 (204)
T ss_pred HHHHHHh-cCCEEEEEccCCCCCCChhHHHHHH----------HHHHcCCCEE--EEEcCCCHHHHHHH----HHHhCCC
Confidence 3444444 45666665 33 68999998653 4443 344 45666666654433 2333444
Q ss_pred CCCcEEEECCCCcee
Q 003115 203 GWPLSVFLSPDLKPL 217 (846)
Q Consensus 203 G~P~~v~l~pdg~~~ 217 (846)
.+|..+ ++ |+.|
T Consensus 168 TvPqVf-I~--G~~I 179 (204)
T PTZ00062 168 TYPQLY-VN--GELI 179 (204)
T ss_pred CCCeEE-EC--CEEE
Confidence 445443 33 4555
No 274
>PRK10824 glutaredoxin-4; Provisional
Probab=69.29 E-value=24 Score=33.73 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhh
Q 003115 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEV 158 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~ 158 (846)
.+.++++-++++ |+|..-. +||++|+...+
T Consensus 5 ~~~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~ 38 (115)
T PRK10824 5 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQ 38 (115)
T ss_pred HHHHHHHHhcCC-EEEEECCCCCCCCCchHHHHHH
Confidence 345556666554 5555433 59999998764
No 275
>PLN02345 endoglucanase
Probab=68.64 E-value=1.7e+02 Score=34.78 Aligned_cols=118 Identities=10% Similarity=-0.035 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcch-------------------HHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~leD-------------------yA~~i~aLl~LYe~Tg 637 (846)
+++++.++=..+||++..- .+|.+++...++..+ .+..+|+ -+.++.+|...+.+..
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7899999999999987653 357888875544221 1122222 2345556666666655
Q ss_pred C--H----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 003115 638 G--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 709 (846)
Q Consensus 638 d--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Nsv~a~~L~rL~~lt~~~~~ 709 (846)
+ + ++|+.|+++++.+..+ .|.|..... +. .+..+| -+-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~-~~----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIP-EV----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCC-cc----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 3 3 5688899988887753 222322110 00 011111 112578888889999996
Q ss_pred hHHHHHHH
Q 003115 710 DYYRQNAE 717 (846)
Q Consensus 710 ~~y~~~A~ 717 (846)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 78988774
No 276
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=65.80 E-value=22 Score=39.40 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=60.4
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CC
Q 003115 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP 612 (846)
Q Consensus 534 ~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~ 612 (846)
..-+|+..- ..-|.-|+++|+.++| ++|.+++.+..+||++..+. +||+-..|-. +.
T Consensus 33 ~~TiDN~aT----~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDNDAT----TTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGGTT----HHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccChhH----HHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 344566622 3457889999999988 89999999999999998886 6777666522 11
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHc
Q 003115 613 SKAPGFLDDYA--FLISGLLDLYEFGSGT---------KWLVWAIELQNTQDELF 656 (846)
Q Consensus 613 ~~~~~~leDyA--~~i~aLl~LYe~Tgd~---------~yL~~A~~L~~~~~~~F 656 (846)
-...-+.+|.| -++.-|.+.++..++- ++.+...+-.+.++..-
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444554 4677777777777766 44444444444444443
No 277
>PLN02171 endoglucanase
Probab=65.02 E-value=2.6e+02 Score=34.51 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------h-HHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------D-YAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le------------------D-yA~~i~aLl~LYe~Tg 637 (846)
+.+|+.++=..||+++..- +.+.+++...+|..+. +..+| | -+.++.+|...+.+-.
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 6799999999999998763 4567887765542210 11111 1 2345555555555554
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003115 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 708 (846)
|+. .|+.|+++++.++++ .|. |..+.... .+..+| -+-.++++-..|++.||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~-y~~~~~~~----------~~~Y~s~s~y~DEl~WAAawLy~ATgd-- 255 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKY-----RGK-YDSSITVA----------QKYYRSVSGYGDELLWAAAWLYQATNN-- 255 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCccc----------CCccCCCCCccHHHHHHHHHHHHHhCC--
Confidence 444 588888888887653 121 21110000 011111 134788888899999996
Q ss_pred chHHHHHHHHHHH
Q 003115 709 SDYYRQNAEHSLA 721 (846)
Q Consensus 709 ~~~y~~~A~~~l~ 721 (846)
..|.+.+.....
T Consensus 256 -~~Yl~~~~~~~~ 267 (629)
T PLN02171 256 -QYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHH
Confidence 789888765443
No 278
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=64.98 E-value=6.2 Score=37.81 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhh
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~ 158 (846)
.+.|++++.|+-.+|+||+.|+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~ 25 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAP 25 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhH
Confidence 45678888899999999999974
No 279
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=62.04 E-value=23 Score=30.62 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.3
Q ss_pred EEEeccCChhhhhhhhc
Q 003115 143 LSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 143 l~~g~~wC~wC~~me~e 159 (846)
..|....|+||..+++.
T Consensus 2 ~~f~d~~Cp~C~~~~~~ 18 (98)
T cd02972 2 VEFFDPLCPYCYLFEPE 18 (98)
T ss_pred eEEECCCCHhHHhhhHH
Confidence 46788899999999873
No 280
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=61.98 E-value=1.2e+02 Score=31.59 Aligned_cols=127 Identities=14% Similarity=0.015 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCC--CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC
Q 003115 282 QNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (846)
Q Consensus 282 ~~~~~~~~~~l~~~~D~~~GGfg~apKF--P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgG 359 (846)
.+.++++++.|.+.- ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ...+|
T Consensus 51 ~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~dG 121 (300)
T cd00688 51 DENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNEDG 121 (300)
T ss_pred hHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCCC
Confidence 456677777777654 457999887663 33322222222221111000 01122333334433331 23467
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003115 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (846)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggf 423 (846)
||..+.-... ..++-+.-....+..+.+++.+..... ...+.++++||.+.. .++|||
T Consensus 122 ~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 122 GFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 8775432211 012223344457778888877665543 567899999999865 668888
No 281
>PLN02308 endoglucanase
Probab=61.46 E-value=3.2e+02 Score=32.72 Aligned_cols=121 Identities=10% Similarity=-0.042 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCC-------------------cchHHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGF-------------------LDDYAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~-------------------leDyA~~i~aLl~LYe~Tg 637 (846)
+..|+.++=..+||++... .+|.+++...++..+. ++. .+--+.++.+|...+.+..
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 5689999999999987653 3578888765542111 011 1122455566666777665
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003115 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 708 (846)
|+. .|+.|+++++.++++ .|.|...... .......+ -+-.++++-..|+..|++
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~----------~~~~~Y~~~s~~~DEl~WAAawLy~ATgd-- 252 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKY-----RGAYSSSLHA----------AVCPFYCDFNGYQDELLWGAAWLHKASRR-- 252 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCCc----------ccCCCcCCCCcccHHHHHHHHHHHHHhCC--
Confidence 554 577888888777652 2333221100 00011222 134678888889999996
Q ss_pred chHHHHHHHHH
Q 003115 709 SDYYRQNAEHS 719 (846)
Q Consensus 709 ~~~y~~~A~~~ 719 (846)
..|.+.+...
T Consensus 253 -~~Yl~~~~~~ 262 (492)
T PLN02308 253 -REYREYIVKN 262 (492)
T ss_pred -HHHHHHHHHH
Confidence 7898877653
No 282
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=61.03 E-value=1.8e+02 Score=33.65 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC--------CCC------------CC-CcchHHHHHHHHHHHHHHc
Q 003115 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SKA------------PG-FLDDYAFLISGLLDLYEFG 636 (846)
Q Consensus 578 ~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~--------~~~------------~~-~leDyA~~i~aLl~LYe~T 636 (846)
.++.|+.++=.++||++.... .|.|+....+|. +.. .. -.+--+.++.+|...+.+-
T Consensus 93 ~~dllde~kwg~D~llkm~~~--~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQDS--DGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBSC--TTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCC--CCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 489999999999999976643 466777654431 100 01 1122344555666666665
Q ss_pred CC--H----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC--hHHHHHHHHHHHHHHhCCCC
Q 003115 637 SG--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 637 gd--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Nsv~a~~L~rL~~lt~~~~ 708 (846)
.+ + ++|+.|+++++.+.++. |.|++...... .+..++ -...++++-..|++.|++
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~-----~~~~~~~~~~~----------~~~Y~~~~~~De~~wAA~~Ly~aTg~-- 233 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNP-----GVYSDNPQPNG----------GGFYNSSGYEDELAWAAAELYRATGD-- 233 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHST-----THGGGTSTCTT----------TTTSHCS-SHHHHHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC-----CcccCCccccc----------CCcccCCCcccHHHHHHHHHHHhcCc--
Confidence 54 4 66788888888776542 33433321110 111222 223577788899999996
Q ss_pred chHHHHHHHHHHHHH
Q 003115 709 SDYYRQNAEHSLAVF 723 (846)
Q Consensus 709 ~~~y~~~A~~~l~~~ 723 (846)
..|++.+++....+
T Consensus 234 -~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 234 -ESYLDYAKEYYDDL 247 (444)
T ss_dssp -HHHHHHHHHHCCTS
T ss_pred -HHHHHHHHHhHHhh
Confidence 88999988665443
No 283
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=60.88 E-value=30 Score=39.09 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~~~leDyA~~ 625 (846)
-.++.||..|++.-+++ ...|+..|+.+..-++++... .|+..-.. ..|-.......-+-++.
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~llpG~~~f~~~~~~~~npSY~ 179 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVLLPGDWGFNSDDYWTTNPSYF 179 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEECSSSSSCBTTSEEEEEGGGS
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEEeccccccCCCCceEeChhhc
Confidence 57789999999999852 157999999999998887765 34322221 11111111111123444
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 003115 626 I-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (846)
Q Consensus 626 i-~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (846)
+ -++-.+++++++..|.+.+....+.+.+.. .+..|
T Consensus 180 ~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 180 MPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp -HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 4 777789999999999999998888777665 33344
No 284
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=60.17 E-value=52 Score=36.83 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=65.0
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE--E--ecCCCCC
Q 003115 541 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH--S--FRNGPSK 614 (846)
Q Consensus 541 ilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~--G~l~~--~--~~dg~~~ 614 (846)
.-|+--|-||--++...+.+|+ +-|-+.|+++.+||++.-....+ |.... + |......
T Consensus 182 tctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsg 245 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSG 245 (587)
T ss_pred chhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccC
Confidence 3466668888888888998887 67999999999999876543222 22111 1 1111234
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 615 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 615 ~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
+.+-.+.| -+-+|..|-..||+.||++-..-.+.+.+.
T Consensus 246 igagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 246 IGAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred cCcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 44445555 345677888999999999988777776544
No 285
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=58.35 E-value=36 Score=30.97 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhccCCCCcee
Q 003115 402 SYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 402 ~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
...++++++||++ ++.++|||-
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cHHHHHHHHHHHH-hcCCCCCCC
Confidence 6788999999998 778899983
No 286
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=58.22 E-value=14 Score=37.54 Aligned_cols=57 Identities=28% Similarity=0.442 Sum_probs=36.6
Q ss_pred HHhcCCCEEEEEeccCC-hhhhhhhhcccCCHHHHHHHhc-----CeEEEEEcCCC-CccHHHHHHH
Q 003115 134 ARKRDVPIFLSIGYSTC-HWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREE-RPDVDKVYMT 193 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC-~wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~ee-~p~~~~~y~~ 193 (846)
+.=.||+++|+|++..| .-|-.+-.. =.++.+.+.+ +||.|-+|-+. .|+.-+.|.+
T Consensus 48 ~~~~Gk~~lv~F~yT~CpdvCp~~l~~---l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~ 111 (174)
T PF02630_consen 48 DDLKGKWVLVFFGYTRCPDVCPTTLAN---LSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAK 111 (174)
T ss_dssp GGGTTSEEEEEEE-TTSSSHHHHHHHH---HHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHH
T ss_pred HHhCCCeEEEEEEEcCCCccCHHHHHH---HHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 33469999999999999 568766542 2233444432 48888898653 5776666643
No 287
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=57.44 E-value=40 Score=28.34 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=37.1
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+++.||++|++..- +.+..+-.|-.+.||....+ ..|. .++..+..|+.+ +.||..++.
T Consensus 4 y~~~~~p~~~rv~~-------~L~~~gl~~e~~~v~~~~~~---~~~~----~~np~~~vP~L~--~~~g~~l~e 62 (71)
T cd03060 4 YSFRRCPYAMRARM-------ALLLAGITVELREVELKNKP---AEML----AASPKGTVPVLV--LGNGTVIEE 62 (71)
T ss_pred EecCCCcHHHHHHH-------HHHHcCCCcEEEEeCCCCCC---HHHH----HHCCCCCCCEEE--ECCCcEEec
Confidence 68899999998642 22333445777778775433 2232 245778899885 456776653
No 288
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=57.37 E-value=1.4e+02 Score=32.36 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC-CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC
Q 003115 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (846)
Q Consensus 281 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF-P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgG 359 (846)
+....+++++-+.+..+...|||+..|-- |........+.....-++. ........++ ..-|.+. -+-.|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~~~~~-~~~l~~~------q~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRIDREKI-YKFLSSL------QNPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhhHHHH-HHHHHHh------cCCCC
Confidence 34556777888887773447999987533 3222112222211111110 0001111122 2223333 12458
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
||. ++. |...|.-=.- .-+.+..+.+... ....+++++||.+ .+.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~ty--------~al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFVY--------CALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHHH--------HHHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 443 3333332211 1222222333332 4567889999997 5788999854
No 289
>PLN00119 endoglucanase
Probab=56.77 E-value=4.1e+02 Score=31.76 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------hH-HHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------DY-AFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le------------------Dy-A~~i~aLl~LYe~Tg 637 (846)
+.+|+.++-..+||++..- ..+.|++...+|..+. +..++ |- +.++.+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6799999999999998763 3567877655442211 11111 22 344555555555554
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 003115 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 709 (846)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Nsv~a~~L~rL~~lt~~~~~ 709 (846)
|+. .|+.|+++++.++++ .|. |....... .+.++| -.-.++++-..|++.||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~-----~g~-y~~~~~~~----------~g~Y~ss~~~DEl~WAAawLY~aTgd--- 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAH-----PGL-YQNSIPNA----------GGFYASSGYEDELLWAAAWLHRATND--- 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCCCC----------CCCCCCCchhhHHHHHHHHHHHHhCC---
Confidence 444 578888888887753 122 21110000 011111 113577788889999996
Q ss_pred hHHHHHHHH
Q 003115 710 DYYRQNAEH 718 (846)
Q Consensus 710 ~~y~~~A~~ 718 (846)
..|.+.+..
T Consensus 256 ~~Yl~~~~~ 264 (489)
T PLN00119 256 QTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHh
Confidence 788887653
No 290
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=56.55 E-value=19 Score=37.80 Aligned_cols=56 Identities=32% Similarity=0.450 Sum_probs=37.9
Q ss_pred HHHhcCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHh----c--CeEEEEEcCCC-CccHHHHH
Q 003115 133 EARKRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN----D--WFVSIKVDREE-RPDVDKVY 191 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln----~--~FV~vkvD~ee-~p~~~~~y 191 (846)
...-+|||.+|+|++..|+- |..+-. .-..+.+.++ . ++|.|.||-+. .|+..+.|
T Consensus 62 ~~~l~Gk~~lv~FgyT~CpdVCP~~l~---~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 62 LKDLKGKPSLVFFGYTHCPDVCPTTLA---ELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred ccccCCCEEEEEeecCCCCccChHHHH---HHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 33347999999999999985 887654 3344444444 1 37888888653 36666655
No 291
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=56.12 E-value=1.2e+02 Score=38.38 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.7
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~ 607 (846)
+|+|-+++...|++.+..++.++. ..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 689999999999999999986321 135779999999999999999998866654
No 292
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=56.01 E-value=89 Score=35.98 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=68.3
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEEe-cCCCC
Q 003115 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSF-RNGPS 613 (846)
Q Consensus 536 ~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G-~l~~~~-~dg~~ 613 (846)
..|..-=|+---.+.+||.+|++.-++ ++|++.|..+++.|.++...+..| +..-.. ..|-.
T Consensus 108 v~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~ 171 (376)
T PRK11097 108 VLDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFA 171 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeecccccccc
Confidence 345555566667889999999999987 789999999999999887664444 221111 11100
Q ss_pred CCCCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003115 614 KAPGFLDDYAF-LISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 614 ~~~~~leDyA~-~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
......-+=++ +...+-.+++++++..|.+.+....+.+.+.-
T Consensus 172 ~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 172 DDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 00111012233 34445556788999999999988888877643
No 293
>PLN02909 Endoglucanase
Probab=55.76 E-value=4.2e+02 Score=31.69 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCc-------------------chHHHHHHHHHHHHHHc
Q 003115 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFL-------------------DDYAFLISGLLDLYEFG 636 (846)
Q Consensus 578 ~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~l-------------------eDyA~~i~aLl~LYe~T 636 (846)
.+.+|+.++=..+||++... ..|.+++...++..+. ++.+ +--+.++.+|...+.+.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vf 196 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVF 196 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 47899999999999988653 3578888754432111 1111 12244555566656555
Q ss_pred C--CH----HHHHHHHHHHHHHHHHc--cccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 003115 637 S--GT----KWLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 637 g--d~----~yL~~A~~L~~~~~~~F--~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~ 708 (846)
. |+ +.|+.|+++++++.++= ++. ..+||.... +=+-.++++-..|++.||+
T Consensus 197 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~-~~~~y~s~s------------------~y~DEl~WAAawLy~aTgd-- 255 (486)
T PLN02909 197 RHVDHKYSRRLLNKAKLLFKFAKAHKGTYDG-ECPFYCSYS------------------GYNDELLWAATWLYKATKK-- 255 (486)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCccccCC------------------CcchHHHHHHHHHHHHhCC--
Confidence 4 44 45888888888887531 000 011221100 0023677777788999986
Q ss_pred chHHHHHHHH
Q 003115 709 SDYYRQNAEH 718 (846)
Q Consensus 709 ~~~y~~~A~~ 718 (846)
..|.+.+..
T Consensus 256 -~~Yl~~~~~ 264 (486)
T PLN02909 256 -QMYLKYIKH 264 (486)
T ss_pred -HHHHHHHHh
Confidence 778876653
No 294
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=53.92 E-value=2.4e+02 Score=33.77 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=56.1
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 003115 541 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 616 (846)
Q Consensus 541 ilt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~ 616 (846)
|-++-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++.-. ..+....
T Consensus 305 ipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~~- 371 (512)
T PF01204_consen 305 IPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRSP- 371 (512)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEGG-
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCcc-
Confidence 34467888865 78889999997321 2579999999999999999999888766532 2232211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003115 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 617 ~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
.+.+.+++=|+--.-+++ .|..+...++..+
T Consensus 372 ------~~~~a~f~PL~ag~a~~~---qa~~~~~~~l~~~ 402 (512)
T PF01204_consen 372 ------VFSPANFLPLWAGIASPE---QAERLVARALDYL 402 (512)
T ss_dssp --------BGGGGHHHHTT-S-HH---HHHHHHHHHHHHC
T ss_pred ------cccHHHHHHHHHhhcCHh---hhhhHHHHHHHHH
Confidence 223344444543333332 3555666666555
No 295
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=52.90 E-value=50 Score=32.70 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC--CCC
Q 003115 128 EEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~--~G~ 204 (846)
.+-+.+.-..++| +++.|..........+.+.. .++++-....++.+.+|.+..+++.+.+ |. ..+
T Consensus 84 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~~~~~~~~~~--------~i~~~~~ 152 (184)
T PF13848_consen 84 PENFEKLFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDADDFPRLLKYF--------GIDEDDL 152 (184)
T ss_dssp TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETTTTHHHHHHT--------TTTTSSS
T ss_pred hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehHHhHHHHHHc--------CCCCccC
Confidence 4466777777877 66666555566666555422 5667666667888899988655544433 43 489
Q ss_pred CcEEEECCCCce
Q 003115 205 PLSVFLSPDLKP 216 (846)
Q Consensus 205 P~~v~l~pdg~~ 216 (846)
|..+++++....
T Consensus 153 P~~vi~~~~~~~ 164 (184)
T PF13848_consen 153 PALVIFDSNKGK 164 (184)
T ss_dssp SEEEEEETTTSE
T ss_pred CEEEEEECCCCc
Confidence 999999976544
No 296
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=52.33 E-value=52 Score=35.92 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003115 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (846)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~ 415 (846)
++.+++..-..++.. +-+-+|||-- |...+-+--.+..|..+.++.+|.... +....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH-
Confidence 344444444444332 4456799842 321112446677999999999987432 2346789999999997
Q ss_pred ccCCCCcee
Q 003115 416 MIGPGGEIF 424 (846)
Q Consensus 416 m~~~~Ggfy 424 (846)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899995
No 297
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=51.48 E-value=54 Score=37.54 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHccCChHHHH----HHHHHHHHHHH
Q 003115 377 KMLYDQGQLANVYLDAFSLTKDVFYSY----ICRDILDYLRR 414 (846)
Q Consensus 377 KMLyDNA~Ll~~ya~Ay~~t~~~~y~~----~A~~t~~fl~r 414 (846)
.+.-.|...+..-.+.|+.|||..|++ .++++++|+++
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ---------------------------EHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 344348888888888999999987754 78999999998
No 298
>PLN03009 cellulase
Probab=50.86 E-value=5.1e+02 Score=31.05 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc----
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD---- 620 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le---- 620 (846)
+..+..|+-++..+++. -|. + ..++.|+.++=..+||++...+ .|++++...++..+. +..++
T Consensus 90 a~s~~~L~w~~~~f~d~-------~~~-~-~~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~ 158 (495)
T PLN03009 90 AFTTTMLAWSVIEFGDL-------MPS-S-ELRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDT 158 (495)
T ss_pred HHHHHHHHHHHHHhHhh-------CCc-c-ccHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCC
Confidence 44445555555555541 122 2 2478999999999999986533 578988765432110 01111
Q ss_pred --------------h-HHHHHHHHHHHHHHcC--CHHH----HHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003115 621 --------------D-YAFLISGLLDLYEFGS--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (846)
Q Consensus 621 --------------D-yA~~i~aLl~LYe~Tg--d~~y----L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 679 (846)
| -+.++.+|...+.+.. |+.| |+.|+++++.+... .|.|..... ..+ -..
T Consensus 159 ~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~-~~~---g~~ 229 (495)
T PLN03009 159 PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDD-IKD---GVC 229 (495)
T ss_pred CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCcc-ccC---ccc
Confidence 1 2456666666666654 5554 77888888777642 344432210 000 000
Q ss_pred CCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003115 680 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (846)
Q Consensus 680 ~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 719 (846)
. ..+| -+-.++++-..|+..||+ ..|.+.++..
T Consensus 230 ~----~Y~~~s~~~DE~~WAAawLy~aTgd---~~Yl~~~~~~ 265 (495)
T PLN03009 230 P----FYCDFDGYQDELLWGAAWLRRASGD---DSYLNYIENN 265 (495)
T ss_pred c----CcCCcccccHHHHHHHHHHHHHhCC---HHHHHHHHHh
Confidence 0 1233 245788888899999996 7898877643
No 299
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=33 Score=30.42 Aligned_cols=65 Identities=28% Similarity=0.381 Sum_probs=38.5
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc------------CCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD------------REERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD------------~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
-||++ ||+..|+-|-..-.+ -+.+|=+|=.|.+- |+.+|..|+.- ..|.-|+|
T Consensus 2 skp~l--fgsn~Cpdca~a~ey-------l~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk------~~gyiGIP 66 (85)
T COG4545 2 SKPKL--FGSNLCPDCAPAVEY-------LERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK------SNGYIGIP 66 (85)
T ss_pred CCcee--eccccCcchHHHHHH-------HHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh------hcCcccce
Confidence 37866 999999999764321 12333344433332 33444444321 23667899
Q ss_pred cEEEECCCCceecc
Q 003115 206 LSVFLSPDLKPLMG 219 (846)
Q Consensus 206 ~~v~l~pdg~~~~~ 219 (846)
.. +++||+++.+
T Consensus 67 al--l~~d~~vVl~ 78 (85)
T COG4545 67 AL--LTDDGKVVLG 78 (85)
T ss_pred EE--EeCCCcEEEe
Confidence 75 6889988875
No 300
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=50.55 E-value=32 Score=30.28 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=38.6
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
++.++.+.||-|..++. .+.++. +..|....||.++.|++...| + .-.|...+-++
T Consensus 2 l~l~~k~~C~LC~~a~~------~L~~~~~~~~~~l~~vDI~~d~~l~~~Y--------~-~~IPVl~~~~~ 58 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKE------ILEEVAAEFPFELEEVDIDEDPELFEKY--------G-YRIPVLHIDGI 58 (81)
T ss_dssp EEEEE-SSSHHHHHHHH------HHHHCCTTSTCEEEEEETTTTHHHHHHS--------C-TSTSEEEETT-
T ss_pred EEEEcCCCCChHHHHHH------HHHHHHhhcCceEEEEECCCCHHHHHHh--------c-CCCCEEEEcCc
Confidence 35589999999999874 233322 345889999999888877766 3 36898665553
No 301
>PLN02613 endoglucanase
Probab=50.21 E-value=5.2e+02 Score=31.00 Aligned_cols=119 Identities=12% Similarity=-0.036 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--C-------------------CCcchHHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--P-------------------GFLDDYAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~-------------------~~leDyA~~i~aLl~LYe~Tg 637 (846)
+.+|+.++=..+||++.... .+.|+....+|.... + .-.+--+.++.+|...+.+-.
T Consensus 112 ~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk 189 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFK 189 (498)
T ss_pred hHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999887533 456766554442110 0 111223345556666666654
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 003115 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 711 (846)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~ 711 (846)
|+. .|+.|+++++.+.++ .|.|.... +.+.+ .-+-.-.++++-..|+..||+ ..
T Consensus 190 ~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~-----------~~y~s-~s~~~DEl~WAAawLy~aTGd---~~ 249 (498)
T PLN02613 190 DVDSSYSSKLLNHARSLFEFADKY-----RGSYQASC-----------PFYCS-YSGYQDELLWAAAWLYKATGE---KK 249 (498)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-cCccchHHHHHHHHHHHHhCC---HH
Confidence 444 588888888887653 23232210 00000 000112467777889999996 78
Q ss_pred HHHHHHHH
Q 003115 712 YRQNAEHS 719 (846)
Q Consensus 712 y~~~A~~~ 719 (846)
|.+.+...
T Consensus 250 Yl~~~~~~ 257 (498)
T PLN02613 250 YLNYVISN 257 (498)
T ss_pred HHHHHHhc
Confidence 98877653
No 302
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=50.02 E-value=1.1e+02 Score=37.81 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCCCC-------C---CCcchHHHHHHHHHHHHHHcC---
Q 003115 579 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSKA-------P---GFLDDYAFLISGLLDLYEFGS--- 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l---~d~~~G~l~~~-----~~dg~~~~-------~---~~leDyA~~i~aLl~LYe~Tg--- 637 (846)
.+....+..+.+++...+ .+..+.++.+. +.|+...+ . ..-+=+.+++.++..+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 567778888888887766 22333344442 22221110 1 112223447888888888888
Q ss_pred -CHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003115 638 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (846)
Q Consensus 638 -d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 679 (846)
-++|.+.|+++.+.+...||.+ .+||+...+++....|+.
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~ 482 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPN 482 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCcc
Confidence 5678899999999999999976 568887766656555543
No 303
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=49.71 E-value=1.6e+02 Score=33.34 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCC-C---CCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~~-~---~~~leDyA~~i~aLl~LYe~Tg--d~~yL~~A~~L~~~~~~~F~D~ 659 (846)
.++.+|.++++..+++|.+-+.+..+... . ..=.|+=-..+.||+.+.+..| ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 46778888898755667777776443321 1 2334555688999999999999 558999999999998777654
Q ss_pred CCCcccccCCCCC-----cccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 660 EGGGYFNTTGEDP-----SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 660 ~~Ggyf~t~~~~~-----~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
.|.....+.+.. ..++ -||= .+.-.+..++.++++ ..|.+.++..++.+....
T Consensus 154 -~g~~~llpG~~~f~~~~~~~~---------npSY--~~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGFNSDDYWTT---------NPSY--FMPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSCBTTSEEEE---------EGGG--S-HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCCCCceEe---------Chhh--ccHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 343333322110 1111 1222 233456688999986 679998888877665443
No 304
>PRK13271 treA trehalase; Provisional
Probab=49.09 E-value=2.9e+02 Score=33.64 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=64.7
Q ss_pred hhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCC
Q 003115 542 IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPG 617 (846)
Q Consensus 542 lt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~~ 617 (846)
-++-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.||+++.|.++.-. .+++
T Consensus 338 PVDLNALLy~ae~~LA~la~~lGd~~------------~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~----- 400 (569)
T PRK13271 338 PVDLNALMFKMEKILARASKAAGDNA------------MANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK----- 400 (569)
T ss_pred CchHHHHHHHHHHHHHHHHHHhCChh------------hHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC-----
Confidence 3467888866 5666777777631 01468899999999999999998777665432 2222
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccc
Q 003115 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 666 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (846)
.-+ .+.+.+++-|+-=.-+ .+.|..+.+.+.++|..+ ||.=.
T Consensus 401 -~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpT 442 (569)
T PRK13271 401 -VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNT 442 (569)
T ss_pred -Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccC
Confidence 122 3566677777642223 256777887777777653 44443
No 305
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=47.69 E-value=3e+02 Score=32.49 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=89.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhcCCC--CCCCCchhhhchHHHH-HHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 003115 504 ASKLGMPLEKYLNILGECRRKLFDVRSKRP--RPHLDDKVIVSWNGLV-ISSFARASKILKSEAESAMFNFPVVGSDRKE 580 (846)
Q Consensus 504 a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~--~P~~DdKilt~WNglm-I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~ 580 (846)
+..+..+.+.+.+..+.++..++..-..-+ =|.+|++ ..|.|=+ +.+++..+ .+++ .
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~-~~~~----------------~- 168 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYY-SFGD----------------A- 168 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHC-CT------------------H-
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHH-hCCc----------------H-
Confidence 334555667777777777777665433211 2677566 2455544 33333332 3343 2
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003115 581 YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 581 yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA-~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (846)
...++..+.+.+.... +|.+....-... ......-+|+ +.+..+-++|+.|||.++++..-...+..++.+...
T Consensus 169 --~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~ 243 (509)
T PF05592_consen 169 --ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERR 243 (509)
T ss_dssp --HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2344444444444332 455533211100 1122233443 578889999999999998876655555555544322
Q ss_pred CCCc-c--cccCCCCCcccccccCCCCCCCC---ChHHHH---HHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHH
Q 003115 660 EGGG-Y--FNTTGEDPSVLLRVKEDHDGAEP---SGNSVS---VINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 660 ~~Gg-y--f~t~~~~~~l~~R~k~~~D~a~P---S~Nsv~---a~~L~rL~~lt~~~-~~~~y~~~A~~~l~~~~~~i~ 728 (846)
...+ . ....-.|..... ...+...+ ..|+.. +..+.+|+.+.|++ ....|+++|+++-+++...+-
T Consensus 244 ~~~~~~~~~~~~~~DW~~~~---~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~ 319 (509)
T PF05592_consen 244 VDDGLDGLPGWGFGDWLAPG---NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFW 319 (509)
T ss_dssp B-TSSB-CCSB--S-SS-------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCE
T ss_pred CCccccCCCCCceeecCCcc---CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2110 0 000000000000 01111112 144543 34466788888852 134688888888777766543
No 306
>PRK13270 treF trehalase; Provisional
Probab=47.60 E-value=5.2e+02 Score=31.44 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=75.8
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCc
Q 003115 544 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 619 (846)
Q Consensus 544 ~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~l 619 (846)
+-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.|||++.|.++.- .+.++ .
T Consensus 350 DLNaiL~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~------~ 411 (549)
T PRK13270 350 DLNAFLYKLESAIANISALKGEKET------------EALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ------L 411 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc------c
Confidence 56788855 67777777876311 256889999999999999999887766543 12221 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCC--CCChHHHHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVINL 697 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a--~PS~Nsv~a~~L 697 (846)
+ .+.+.+++=|+.=.-++ +.|..+.+.+..+|.. .||.--+.. ...+.-|++ =|-.+-+++..|
T Consensus 412 -~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmiieGL 477 (549)
T PRK13270 412 -A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAIQGF 477 (549)
T ss_pred -c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHHHHH
Confidence 2 25677888887533343 4577777777666653 344333211 112222433 244555677777
Q ss_pred HHHH
Q 003115 698 VRLA 701 (846)
Q Consensus 698 ~rL~ 701 (846)
.+.+
T Consensus 478 ~ryG 481 (549)
T PRK13270 478 KMYG 481 (549)
T ss_pred HHcC
Confidence 6644
No 307
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=46.98 E-value=13 Score=36.83 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcc
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~et 160 (846)
++++.++.|+-..|+||+.|+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHH
Confidence 678899999999999999999644
No 308
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=46.83 E-value=6.6e+02 Score=31.20 Aligned_cols=156 Identities=11% Similarity=0.037 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccc-cCCCCCCCCCCCCh
Q 003115 234 FKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS-RFGGFGSAPKFPRP 312 (846)
Q Consensus 234 f~~~L~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~-~~GGfg~apKFP~~ 312 (846)
..+....+...-+..-+.+.+.-..--+ +-.... ...+.. -.+.....+--|+...|. ..|++=-+|-+|.|
T Consensus 209 ~~~a~~~~~~~l~~g~~~~~~~~~~~W~---~w~~~~---~~~~~~-~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~p 281 (648)
T TIGR01535 209 AYEAAKTAVATLKEGYRRVKDAYIDEWE---KYLNSL---NNFNGK-GNSLYYVSMMILKAHEDKTNPGAYIASLSIPWG 281 (648)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHhcc---ccCCch-HHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCC
Confidence 4455555555555565665554433222 222110 011111 234556666677888888 45999888888765
Q ss_pred hH--------------------HHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc-EEEEEcCCCCC
Q 003115 313 VE--------------------IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG-FHRYSVDERWH 371 (846)
Q Consensus 313 ~~--------------------l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGG-F~RYsvD~~W~ 371 (846)
.. ...|+... ......++.+.+..+.. . .|+ .+.|.+|..-.
T Consensus 282 e~~g~~~n~dYryvW~RD~a~~a~AL~~~G-------~~~~a~~~~~~l~~~~~---------~-~G~~lq~y~vdG~~~ 344 (648)
T TIGR01535 282 DGQADDNTGGYHLVWPRDLYQVANAFLAAG-------DVDSALRSLDYLAKVQQ---------D-NGMFPQNSWVDGKPY 344 (648)
T ss_pred ccCCCCCCCceEEEehhhHHHHHHHHHHCC-------CHHHHHHHHHHHHHHhc---------c-CCCcCceeccCCCCC
Confidence 32 12222221 11112333444333322 1 344 56799987655
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003115 372 VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 416 (846)
Q Consensus 372 vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m 416 (846)
.+ |.=|---|.+|++....++. +...|...++.+++||.+..
T Consensus 345 ~~--~iQlD~~g~~i~~~~~l~~~-~~~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 345 WT--GIQLDETAFPILLAYRLHRY-DHAFYDKMLKPAADFIVKNG 386 (648)
T ss_pred CC--CccccHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHcC
Confidence 44 33333357777766555654 33678888999999999853
No 309
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=46.81 E-value=4.2e+02 Score=28.94 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 003115 585 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (846)
Q Consensus 585 A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leD--yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (846)
..++.+||.+.... +|+|. |.+. ...| |+|.+.|.+.+ + +...|.+ ...+.+++.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf~-----gr~~---k~~D~~ysf~~~a~l~~--l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGLN-----GRPE---KLPDVCYSWWVLSSLKI--I-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCcC-----CCCC---CCCchhHhhHHHHHHHH--h-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888776532 46672 2221 1122 45555555533 3 4445665 788888887764 34567
Q ss_pred cccccC
Q 003115 663 GYFNTT 668 (846)
Q Consensus 663 gyf~t~ 668 (846)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 776543
No 310
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=46.25 E-value=61 Score=26.84 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=35.5
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
-++.++|++|+++.- +.+..+-.|-.+.+|..+.......| ..++..+.+|+.++ ++|..+.
T Consensus 3 Ly~~~~s~~~~~~~~-------~L~~~~l~~~~~~v~~~~~~~~~~~~----~~~~p~~~vP~l~~--~~~~~l~ 64 (74)
T cd03051 3 LYDSPTAPNPRRVRI-------FLAEKGIDVPLVTVDLAAGEQRSPEF----LAKNPAGTVPVLEL--DDGTVIT 64 (74)
T ss_pred EEeCCCCcchHHHHH-------HHHHcCCCceEEEeecccCccCCHHH----HhhCCCCCCCEEEe--CCCCEEe
Confidence 367889999998763 12333335666667654321111223 23456778998864 4566554
No 311
>PLN02175 endoglucanase
Probab=45.64 E-value=5.6e+02 Score=30.67 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCc-------------------chHHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFL-------------------DDYAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~l-------------------eDyA~~i~aLl~LYe~Tg 637 (846)
++.++..+=..+||++... +..|.+++...++..+ .++.+ +--+.++.+|...+.+-.
T Consensus 108 ~~~l~~lkw~~Dyllk~~~-~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk 186 (484)
T PLN02175 108 ENARVNIRWATDYLLKCAR-ATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFR 186 (484)
T ss_pred HHHHHHHHHHHHHHHhCcC-CCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 4566666777888887543 3457888875444221 11112 222345555555555544
Q ss_pred --CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 003115 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 708 (846)
|+. .|+.|+++++.+.++ .|.|.++.... ..+ ..+| -+-..+++-.-|++.||+
T Consensus 187 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~~~~~~------~~~----~Y~s~s~y~DEl~WAAawLY~ATgd-- 249 (484)
T PLN02175 187 KVDSKYSRLLLATAKKVMQFAIQY-----RGAYSDSLSSS------VCP----FYCSYSGYKDELMWGASWLLRATND-- 249 (484)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCCcccCcccc------ccC----ccccCCCccHHHHHHHHHHHHHhCC--
Confidence 444 588888888887752 34454321100 000 1122 235788888899999996
Q ss_pred chHHHHHHHH
Q 003115 709 SDYYRQNAEH 718 (846)
Q Consensus 709 ~~~y~~~A~~ 718 (846)
..|.+.+..
T Consensus 250 -~~Yl~~~~~ 258 (484)
T PLN02175 250 -PYYANFIKS 258 (484)
T ss_pred -HHHHHHHHH
Confidence 788876653
No 312
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=45.20 E-value=19 Score=36.96 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccC
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFE 162 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~ 162 (846)
++...+..+|+.++.|+-..|++|+.++++..+
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 444455668999999999999999999976543
No 313
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=44.32 E-value=46 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=35.0
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC-CCceecc
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG 219 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~p-dg~~~~~ 219 (846)
-+++..|++|++... +....+=.|-.+.+|....+++ ..++.+..|+.++-+. +|++++.
T Consensus 4 Ly~~~~~p~c~kv~~-------~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~e 64 (77)
T cd03040 4 LYQYKTCPFCCKVRA-------FLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLVD 64 (77)
T ss_pred EEEcCCCHHHHHHHH-------HHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEEc
Confidence 478899999999773 2233333466555554322221 1247788998875432 4666664
No 314
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=44.02 E-value=3.3e+02 Score=28.21 Aligned_cols=140 Identities=8% Similarity=0.053 Sum_probs=90.5
Q ss_pred ChhhhhccCC-Ccc---CccchHHHHHHHHhcCCCEEEEEecc--CChhhhhhhhccc---CCHHHHHHHhcCeEEEEEc
Q 003115 110 SPYLLQHAHN-PVD---WFAWGEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVD 180 (846)
Q Consensus 110 SpYL~~ha~~-~v~---W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~wC~~me~etf---~d~eVa~~ln~~FV~vkvD 180 (846)
-+.|....+. |+. |+...++-+..|++-|---+|.+|+- -|+-=+ ..+| +++++.+.++...+.+++.
T Consensus 15 ~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~tr---p~V~~~at~~el~~~l~~~g~~~~~~ 91 (188)
T TIGR00162 15 TDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEE---PYVYGAATSPELVEELKEHGVKFREP 91 (188)
T ss_pred CCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCC---CceEEEeCCHHHHHHHHhcCCeeecC
Confidence 4677777777 676 98888999999999998888888763 222211 1132 5788999998766655544
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHH
Q 003115 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (846)
Q Consensus 181 ~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~ 258 (846)
-.----+.......+ ...|.|...++-.- -.|+|- ...=..+|+.+.+... =+-+.|++.|++
T Consensus 92 ~g~i~G~~glLl~~a----~~~gi~ai~L~~e~------p~y~pD-----P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ 156 (188)
T TIGR00162 92 GGGIIGASGLLLGVS----ELEGIPGACLMGET------PGYMID-----PKAAKAVLEVLCKMLSLEVSVEALEERAKE 156 (188)
T ss_pred CCccccHHHHHHHHH----HHCCCCeEEEEEeC------CCCCCC-----hHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 221112333333333 34589988877542 235442 1256677777777764 478899999988
Q ss_pred HHHHHHHHh
Q 003115 259 AIEQLSEAL 267 (846)
Q Consensus 259 ~~~~l~~~~ 267 (846)
+.+.+++..
T Consensus 157 ie~~~~~~~ 165 (188)
T TIGR00162 157 MEKIIAKIK 165 (188)
T ss_pred HHHHHHHHH
Confidence 888877654
No 315
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=43.86 E-value=90 Score=35.73 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=47.2
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCC-CCC--C
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS-KAP--G 617 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~-~~~--~ 617 (846)
-.+.|...|-.+.+.++.+||.. | .++....++++.++++. +|+++-++...... ++. +.. .
T Consensus 97 ~~D~~~~fVL~vyr~~~~TGD~~----f--------L~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~~ 162 (365)
T PF04685_consen 97 WKDLNPKFVLQVYRDYKWTGDRD----F--------LKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSMY 162 (365)
T ss_dssp --------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EEE
T ss_pred cccccccccccccccccccccch----h--------hhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCee
Confidence 33456888999999999999831 1 13455788999999987 56544445433211 010 111 0
Q ss_pred CcchH-----HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccc
Q 003115 618 FLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (846)
Q Consensus 618 ~leDy-----A~~i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (846)
-.+-| ..++.++.++.++-|++ +|.+.+++..+.+.+.+|+ |.||.
T Consensus 163 G~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 163 GPSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 01122 34566778888888985 5777888888888888996 55776
No 316
>PLN02420 endoglucanase
Probab=42.23 E-value=7e+02 Score=30.17 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA----------- 615 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~----------- 615 (846)
|..++.|+-++..+++. .+-.|. .+.+|+.++=..+|+++..-. .+.++....+|..+.
T Consensus 103 a~t~~~L~w~~~ef~d~-------~~~~g~-~~d~Ldeikw~lD~llk~~~~--~~~~~~qvGdg~~DH~~w~~Pe~~~~ 172 (525)
T PLN02420 103 AFTVTMLSWSVIEYGDQ-------LASTGE-LSHALEAIKWGTDYFIKAHTS--PNVLWAEVGDGDTDHYCWQRPEDMTT 172 (525)
T ss_pred HHHHHHHHHHHHHHHHh-------hhhcCC-cHHHHHHHHHHHHHHHHhCcC--CCceEEeeCCCCcccccccChhhccc
Confidence 45555555555555441 122333 488999999999999887643 456666554432100
Q ss_pred CCC---------cch-HHHHHHHHHHHHHHcC--CHH----HHHHHHHHHHHHHHHccccCCCcccccCCCCCccccccc
Q 003115 616 PGF---------LDD-YAFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 679 (846)
Q Consensus 616 ~~~---------leD-yA~~i~aLl~LYe~Tg--d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k 679 (846)
.+. -.| -+.++.+|...+.+-. |+. .|+.|+++++...+ ..|.| ..+...
T Consensus 173 ~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~-----~~g~y-~~~~~~-------- 238 (525)
T PLN02420 173 SRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDK-----YRGKY-DESLKV-------- 238 (525)
T ss_pred cCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh-----cCCcc-CCCCcc--------
Confidence 000 123 2345555555555554 444 47788888876653 22333 211100
Q ss_pred CCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 680 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 680 ~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
..+...| -.-.++++-..|++.||+ ..|.+.+.+...
T Consensus 239 --~~g~Y~s~s~y~DEl~WAAawLY~ATgd---~~Yl~~a~~~~~ 278 (525)
T PLN02420 239 --VKSYYASVSGYMDELLWGATWLYRATDN---EHYMSYVVDMAH 278 (525)
T ss_pred --cCCCCCCcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 0111222 135788888899999996 789988765433
No 317
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=41.76 E-value=1.4e+02 Score=25.47 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=37.7
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+++.+|+||++..- +.+..+=.|-.+.|+..+.+ ..+ ..+++.+-+|+.+ .||.+++.
T Consensus 2 y~~~~Sp~~~kv~~-------~l~~~~i~~~~~~v~~~~~~---~~~----~~~~p~~~vPvL~---~~g~~l~d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVRL-------ALEEKGIPYELVPVDPEEKR---PEF----LKLNPKGKVPVLV---DDGEVLTD 59 (75)
T ss_dssp EEETTSHHHHHHHH-------HHHHHTEEEEEEEEBTTSTS---HHH----HHHSTTSBSSEEE---ETTEEEES
T ss_pred CCcCCChHHHHHHH-------HHHHcCCeEEEeccCcccch---hHH----HhhcccccceEEE---ECCEEEeC
Confidence 68899999999763 23344336777778866542 222 2335778899986 33777764
No 318
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=41.39 E-value=2.2e+02 Score=31.34 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 003115 283 NALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (846)
Q Consensus 283 ~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~ 362 (846)
..+.++++-|.+..++ .+.|..+.++.+.....++ + ...-+..-|..|+. .|. ++|..
T Consensus 170 ~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~-------~-~~~~a~~~L~~~~~---~d~-~~~~~ 227 (297)
T cd02896 170 QSIRKAISYLENQLPN----------LQRPYALAITAYALALADS-------P-LSHAANRKLLSLAK---RDG-NGWYW 227 (297)
T ss_pred HHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCC-------h-hhHHHHHHHHHHhh---hCC-Cccee
Confidence 3466777777765553 2344444555554433221 1 22334444666653 222 12222
Q ss_pred EEEcCCCCCCCCCc-hhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 003115 363 RYSVDERWHVPHFE-KMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 428 (846)
Q Consensus 363 RYsvD~~W~vPHFE-KMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~D 428 (846)
--+.+..|..+.-. .-+---|..|.++... ++. +.|..+++||.+. +..+|||.|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~vE~TAYALLall~~----~~~---~~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 228 WTIDSPYWPVPGPSAITVETTAYALLALLKL----GDI---EYANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred ccCcCccCCCCCCchhhhHHHHHHHHHHHhc----CCc---hhHHHHHHHHHhc-CCCCCCeehHHH
Confidence 12344555443221 1222233344444433 332 3688999999985 466899999887
No 319
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=40.92 E-value=15 Score=39.81 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=40.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
..|||.++.+|+.||+.|-.. ++ .+...|.+ +| .++-+...-.| .-+..|+.+|..-.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~---sW---~L~~ALsrfGn~-~l~~~~S~~~d-------------~~pn~Ptl~F~~~~ 115 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAE---SW---ALYIALSRFGNF-SLEYHYSDPYD-------------NYPNTPTLIFNNYT 115 (249)
T ss_pred CCCeeEEEEEecccCccchhh---HH---HHHHHHHhcCCe-eeEEeecCccc-------------CCCCCCeEEEecCc
Confidence 679999999999999999762 22 34455554 56 66666543212 23579999998764
Q ss_pred C
Q 003115 214 L 214 (846)
Q Consensus 214 g 214 (846)
.
T Consensus 116 ~ 116 (249)
T PF06053_consen 116 P 116 (249)
T ss_pred C
Confidence 3
No 320
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=40.55 E-value=35 Score=33.14 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=29.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ 181 (846)
...+++++.|+...|++|..|+.... +-+.+++++ .+..+-++.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCCceEEEEEEc
Confidence 34677888899999999999998665 555555443 333333443
No 321
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=40.43 E-value=5.3e+02 Score=31.51 Aligned_cols=138 Identities=10% Similarity=0.070 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 661 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~ 661 (846)
+.|+++.....+.+. +|.+-..+.+ |....-...|---+++.++-++++.|+|..+++.....+..+++.+.+..+
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~ 389 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGND 389 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555544444442 3444333322 221222455666789999999999999998886555555555555544211
Q ss_pred CcccccCCCCCccc-----ccccCCCCC---------CCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHH
Q 003115 662 GGYFNTTGEDPSVL-----LRVKEDHDG---------AEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFE 724 (846)
Q Consensus 662 Ggyf~t~~~~~~l~-----~R~k~~~D~---------a~PS~Nsv~a~~L~r---L~~lt~~~~~~~y~~~A~~~l~~~~ 724 (846)
|-...+.+ .++ +.+++..++ +.---|+.+..+|.. |+...|+. ...|.+.|+++-+.|.
T Consensus 390 --~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 390 --FAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred --cEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 11111111 122 123333222 222346666666665 45545542 2568888877777765
Q ss_pred HHH
Q 003115 725 TRL 727 (846)
Q Consensus 725 ~~i 727 (846)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 443
No 322
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=38.09 E-value=40 Score=35.01 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCEEEEEeccCChhhhhhhhccc-CCHHHHHHHhcCeEEEEEc
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESF-EDEGVAKLLNDWFVSIKVD 180 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf-~d~eVa~~ln~~FV~vkvD 180 (846)
+||-++.|..-.|++|..++. ++ .-+.+.+.+.++-..+++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEec
Confidence 578899999999999999997 44 4477888876653333333
No 323
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=37.92 E-value=37 Score=31.83 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=32.4
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
-++.++|.+|++.. ++|++ +.-...+|..+.|.-.......++ ..|.|..-+++..|+
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~~~~----~~~~~~~~l~~~~~~ 61 (111)
T cd03036 3 FYEYPKCSTCRKAK----------KWLDEHGVDYTAIDIVEEPPSKEELKKWLE----KSGLPLKKFFNTSGK 61 (111)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCceEEecccCCcccHHHHHHHHH----HcCCCHHHHHhcCCc
Confidence 47899999999865 34544 344444555444433233333332 235666666666554
No 324
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.98 E-value=75 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=17.6
Q ss_pred CChhhhhhhhcccCCHHHHHHHhcCeE-EEEEcCCCCccHH
Q 003115 149 TCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDVD 188 (846)
Q Consensus 149 wC~wC~~me~etf~d~eVa~~ln~~FV-~vkvD~ee~p~~~ 188 (846)
+|++|+.+. ++|++.=| ...+|++..++..
T Consensus 15 t~~~C~~ak----------~iL~~~~V~~~e~DVs~~~~~~ 45 (147)
T cd03031 15 TFEDCNNVR----------AILESFRVKFDERDVSMDSGFR 45 (147)
T ss_pred cChhHHHHH----------HHHHHCCCcEEEEECCCCHHHH
Confidence 899998865 35554322 2345666555443
No 325
>PRK10137 alpha-glucosidase; Provisional
Probab=35.83 E-value=4.9e+02 Score=33.03 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=38.3
Q ss_pred chHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 003115 544 SWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 605 (846)
Q Consensus 544 ~WNglm---I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~ 605 (846)
+-|++| -..|++.++++|+... ..+|.+.|.++.+.|.+.+||++.|.++
T Consensus 579 DLNsyLy~a~~~LA~LAe~LG~~e~------------A~~~~~~A~~Lr~aIn~~~WDee~GfY~ 631 (786)
T PRK10137 579 DQASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDETTGFYY 631 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHccCCcCCeEE
Confidence 345555 4689999999987321 2468899999999999999998877665
No 326
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=35.57 E-value=9.5 Score=34.91 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 385 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 385 Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
....++.++...+++.+.+.++++++||++.. .++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 33444455555678889999999999999955 6789874
No 327
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=35.18 E-value=1.1e+02 Score=24.21 Aligned_cols=59 Identities=14% Similarity=-0.046 Sum_probs=35.2
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
-++..+|++|++... +.+..+-.|-.+.++..+.+.. .+ ...++.+..|+.++ + |..+.
T Consensus 3 ly~~~~~~~~~~~~~-------~l~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~P~l~~-~--~~~~~ 61 (71)
T cd00570 3 LYYFPGSPRSLRVRL-------ALEEKGLPYELVPVDLGEGEQE--EF----LALNPLGKVPVLED-G--GLVLT 61 (71)
T ss_pred EEeCCCCccHHHHHH-------HHHHcCCCcEEEEeCCCCCCCH--HH----HhcCCCCCCCEEEE-C--CEEEE
Confidence 367889999998653 2333444677777776543332 12 23457778896653 2 56554
No 328
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=6.6e+02 Score=27.76 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 665 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (846)
..++-||.+.... .|+| +|.| --+.|-.+--+.|..|- +-|...|.++. +|.+++..- .|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcC
Confidence 4456677666543 5667 3444 33556666555555553 44777888765 577777654 477889998
Q ss_pred ccCCC
Q 003115 666 NTTGE 670 (846)
Q Consensus 666 ~t~~~ 670 (846)
+.+.+
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 76643
No 329
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.80 E-value=62 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.6
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|++...+......+.++|.+
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999863
No 330
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=34.54 E-value=6e+02 Score=27.12 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003115 376 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILD 410 (846)
Q Consensus 376 EKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~ 410 (846)
-+-+..-|..+...+.+|.+|||+.|.+.|.++++
T Consensus 52 ~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~ 86 (272)
T PF05426_consen 52 YSRLQRDADAAYALALAYYLTGDEKYADKAAEILN 86 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455577788999999999999999777766654
No 331
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=32.67 E-value=39 Score=31.06 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=30.9
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
-++.++|.+|++.. ++|++ .|.. +|..+.|.-.....+..+ ..|.+..-++++.+.+.
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~--idi~~~~~~~~~l~~~~~----~~~~~~~~li~~~~~~~ 63 (105)
T cd02977 3 IYGNPNCSTSRKAL----------AWLEEHGIEYEF--IDYLKEPPTKEELKELLA----KLGLGVEDLFNTRGTPY 63 (105)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCCcEE--EeeccCCCCHHHHHHHHH----hcCCCHHHHHhcCCchH
Confidence 47999999999865 34443 3444 444444433333333332 22444555556665543
No 332
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=32.53 E-value=1.8e+02 Score=32.51 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=38.0
Q ss_pred cchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003115 125 AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (846)
Q Consensus 125 ~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (846)
...++++++|.+.+.|.||+|.. -|+....-....-+-.++.+..+++-+.++.+
T Consensus 180 ~eL~~ai~~A~~~~GpalIeV~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
T PRK05778 180 KQLVELIKKAISHKGFAFIDVLS-PCVTFNGRNTSTKSPAYMREYYKKRVYKLKLE 234 (301)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcC-CCCCCCCcCCcccCHHHHHHHHHhhcEEcccc
Confidence 34688999999999999999954 56666542221122345777888888888544
No 333
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=31.49 E-value=3.5e+02 Score=31.27 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=73.0
Q ss_pred chHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC------CC
Q 003115 544 SWNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN------GP 612 (846)
Q Consensus 544 ~WNglm-----I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~d------g~ 612 (846)
.|..-| |+-|++||..++| +.||..|.++..--+ +.. .+|+....+-+ .-
T Consensus 417 GW~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEY 477 (594)
T KOG3760|consen 417 GWHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEY 477 (594)
T ss_pred chHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhc
Confidence 377666 9999999999998 789988877763221 222 23444433322 22
Q ss_pred CCC--CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HHHHHccccCCCcccccCC----CCCccccccc
Q 003115 613 SKA--PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN-------TQDELFLDREGGGYFNTTG----EDPSVLLRVK 679 (846)
Q Consensus 613 ~~~--~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~-------~~~~~F~D~~~Ggyf~t~~----~~~~l~~R~k 679 (846)
|.. .=.++++.+-+.||.+|=+. -..+--+.|.+|.. .|+- .+|.-+|.-|+-.. -+|. +.|+
T Consensus 478 PTTP~SfVLNGF~YSLiGLYDL~eT-a~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APN-LARW- 553 (594)
T KOG3760|consen 478 PTTPGSFVLNGFLYSLIGLYDLDET-ARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPN-LARW- 553 (594)
T ss_pred CCCCcceeehhHHHHhhhhhccchh-hhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcc-cccc-
Confidence 222 23455565555555555222 22223344555543 2332 34766676665321 1122 2232
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003115 680 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (846)
Q Consensus 680 ~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~ 719 (846)
| =.++-+..|.-|+.+-. ++-..+.|++-
T Consensus 554 ---D-----YHatHvnqL~llatId~---dpv~~~ta~RW 582 (594)
T KOG3760|consen 554 ---D-----YHATHVNQLKLLATIDK---DPVLSKTADRW 582 (594)
T ss_pred ---h-----hhhHHHHHHHHHhhccc---cHHHHHHHHHH
Confidence 1 12455556666776643 36555555543
No 334
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=30.08 E-value=59 Score=31.54 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=21.1
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCcc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPD 186 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~ 186 (846)
.-++.++|++|++.. ++|+++ .-...+|..+.|.
T Consensus 3 ~iY~~~~C~~C~ka~----------~~L~~~gi~~~~idi~~~~~ 37 (131)
T PRK01655 3 TLFTSPSCTSCRKAK----------AWLEEHDIPFTERNIFSSPL 37 (131)
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCCcEEeeccCChh
Confidence 457999999999844 566653 3333355544444
No 335
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=29.50 E-value=1.1e+02 Score=32.57 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=26.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|++.+.+.+....++.+|..
T Consensus 198 t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 198 TLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999999976
No 336
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=28.86 E-value=1.5e+02 Score=28.65 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=32.8
Q ss_pred HHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCc
Q 003115 164 EGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLK 215 (846)
Q Consensus 164 ~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~--~G~P~~v~l~pdg~ 215 (846)
.+||+.+... +..+-+|.++.+.+.+.| |. .++|+.++++++++
T Consensus 47 ~~vAk~~kgk~i~Fv~vd~~~~~~~~~~f--------gl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 47 KSVAEKFKKKPWGWLWTEAGAQLDLEEAL--------NIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHhcCCcEEEEEEeCcccHHHHHHc--------CCCccCCCEEEEEecccC
Confidence 4778777777 888888988776644443 53 47999999999764
No 337
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=28.83 E-value=41 Score=38.42 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeE---EEEecCCCCC-CCCCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 003115 580 EYMEVAESAASFIRRHLYDEQTHRL---QHSFRNGPSK-APGFLD--DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 653 (846)
Q Consensus 580 ~yLe~A~~~a~~l~~~l~d~~~G~l---~~~~~dg~~~-~~~~le--DyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~ 653 (846)
.-+.+=-.+++|+..+.-+ .+|+- -++..+|-.. .+|.-+ .+.++|..|.++|..++|++||+.|.+-.+-.
T Consensus 377 ~H~aaFyaAadWlV~NQd~-kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~py- 454 (594)
T KOG3760|consen 377 QHSAAFYAAADWLVKNQDD-KGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPY- 454 (594)
T ss_pred HHHHHHHHHHHHHhhCCCC-CCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCe-
Confidence 3444555678888888743 44431 1112233221 122222 34578999999999999999999887665443
Q ss_pred HHccccCCC
Q 003115 654 ELFLDREGG 662 (846)
Q Consensus 654 ~~F~D~~~G 662 (846)
+|...++|
T Consensus 455 -k~~S~dgG 462 (594)
T KOG3760|consen 455 -KINSSDGG 462 (594)
T ss_pred -EeecCCCc
Confidence 35555554
No 338
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=28.04 E-value=92 Score=37.30 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 003115 626 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (846)
Q Consensus 626 i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (846)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-.
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd 363 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYD 363 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EE
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeee
Confidence 34556778888865 68999999999999999999999999754
No 339
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=27.77 E-value=2.5e+02 Score=31.18 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=59.1
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEE---cCCCC--ccHHHHHHHHHHHh-c
Q 003115 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREER--PDVDKVYMTYVQAL-Y 199 (846)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkv---D~ee~--p~~~~~y~~~~~~~-~ 199 (846)
...+++++|.+.+.|.||++.. -|+...++. ..+.++++-+.+.- |...+ +++...+.++.... .
T Consensus 164 eL~~ai~~Al~~~GpslIeV~~-pC~t~n~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 234 (287)
T TIGR02177 164 HLKEIIKEAINHKGYALVDILQ-PCVTYNKIN--------TYEWYRERVYKLDEEGYDPIVREPEEFEEKAAAAIKKAME 234 (287)
T ss_pred HHHHHHHHHHhCCCCEEEEEeC-CCCCCCccc--------HHHHHHHhceeccccccCccccchhhhhhhHHHHHHHHHh
Confidence 3688999999999999999985 455553322 16778888888853 22222 22333443333321 1
Q ss_pred CCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcH
Q 003115 200 GGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKR 249 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~ 249 (846)
..+.+|+=||+..+.+ |.|.+.+.++.+.|.+.+
T Consensus 235 ~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 268 (287)
T TIGR02177 235 WGDRIPIGIFYKNENK----------------ETFEERLEKILPRYMSAP 268 (287)
T ss_pred hcCCceEEEEEECCCC----------------CCHHHHHHHHHHhcccCC
Confidence 2456788777654322 346676777766665433
No 340
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=27.27 E-value=5.7e+02 Score=28.99 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCC---CCCcchH-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKA---PGFLDDY-----AFLISGLLDLYEFGSGTKWLVWAIEL 648 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~---~~~leDy-----A~~i~aLl~LYe~Tgd~~yL~~A~~L 648 (846)
.+.|++|+++...|+-.|.. .+|.-|-. ..-|-.+. .+.--|- .-+|.-+..|-..||++-|-+.|++.
T Consensus 135 dellkmakelg~kllpafnt-tsglp~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arka 213 (587)
T KOG2430|consen 135 DELLKMAKELGNKLLPAFNT-TSGLPFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKA 213 (587)
T ss_pred HHHHHHHHHHhhhhcccccc-CCCCCCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHH
Confidence 57889999999988877754 23422111 11121111 1111222 24677788889999999999999999
Q ss_pred HHHHHHHccccCC--CcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003115 649 QNTQDELFLDREG--GGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (846)
Q Consensus 649 ~~~~~~~F~D~~~--Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 726 (846)
.++++++=....+ |.-......+ .+| -|+.+-.|--...+-|++-|-+.|+ +.|.++-.+-.+++...
T Consensus 214 ldflwekr~rss~l~g~~inihsgd---w~r----kdsgigagidsyyey~lkayillgd---dsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 214 LDFLWEKRHRSSDLMGTTINIHSGD---WTR----KDSGIGAGIDSYYEYLLKAYILLGD---DSFLDRFNKHYDAIKRY 283 (587)
T ss_pred HHHHHHHhcccccccceeEEeccCc---cee----cccCcCcchHHHHHHHHHHhheecc---HHHHHHHHHHHHHHHHH
Confidence 9988776432111 1111111111 112 1333444444567778889999986 78999999888888888
Q ss_pred HHhhhh
Q 003115 727 LKDMAM 732 (846)
Q Consensus 727 i~~~p~ 732 (846)
|.+-|.
T Consensus 284 i~k~pi 289 (587)
T KOG2430|consen 284 INKGPI 289 (587)
T ss_pred hcCCCe
Confidence 877664
No 341
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=27.09 E-value=3.2e+02 Score=34.81 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcC--CH--HHHHHHHHHHHHHHHHccccCCCcccccCCC
Q 003115 623 AFLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGE 670 (846)
Q Consensus 623 A~~i~aLl~LYe~Tg--d~--~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~ 670 (846)
|++...++++....+ |+ +|.+.+..|.+.+.+..||++.|.||+....
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~ 616 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLH 616 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccc
Confidence 444555555555444 33 3559999999999999999999989886543
No 342
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=25.78 E-value=1.2e+02 Score=36.42 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=37.0
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003115 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 528 (846)
Q Consensus 460 ~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~ 528 (846)
+..++..+||+... ++ .+..++++.+|++.+++.++-..+..||+..
T Consensus 452 Er~VI~lRyGL~~~---------------e~-------~TL~EIa~~lGVSrERVRQIe~kAL~KLR~~ 498 (509)
T PRK05901 452 EAGVIRMRFGLTDG---------------QP-------KTLDEIGQVYGVTRERIRQIESKTLRKLRHP 498 (509)
T ss_pred HHHHHHHHhhccCC---------------CC-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46788888999531 11 2457899999999999999999999999863
No 343
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.04 E-value=2.6e+02 Score=23.83 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=32.8
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
-++.++|++|++-.. +.+..+=.|-.+.++.. +.....+ ..+++.+..|+.+ .+.+|..++.
T Consensus 4 Ly~~~~sp~~~kv~~-------~L~~~gi~y~~~~v~~~--~~~~~~~----~~~~p~~~vP~l~-~~~~~~~l~e 65 (77)
T cd03041 4 LYEFEGSPFCRLVRE-------VLTELELDVILYPCPKG--SPKRDKF----LEKGGKVQVPYLV-DPNTGVQMFE 65 (77)
T ss_pred EecCCCCchHHHHHH-------HHHHcCCcEEEEECCCC--hHHHHHH----HHhCCCCcccEEE-eCCCCeEEEc
Confidence 467789999997542 12223324655555422 1111122 2346778899864 2334666654
No 344
>PRK13271 treA trehalase; Provisional
Probab=24.48 E-value=1.2e+02 Score=36.97 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHH---HHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccCC
Q 003115 622 YAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 669 (846)
Q Consensus 622 yA~~i~a---Ll~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~ 669 (846)
+|++..+ |.++++..|+. +|.++|.++.+.+.+.|||++.|.||+-..
T Consensus 342 NALLy~ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 342 NALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 4444433 44556777776 688999999999999999998888887643
No 345
>PRK13272 treA trehalase; Provisional
Probab=24.45 E-value=1.1e+03 Score=28.53 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=58.1
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCc
Q 003115 544 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 619 (846)
Q Consensus 544 ~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~l 619 (846)
+-|++|+. .|++.++.+|+... ..+|.+.|.+..+.|.+.|||+ .|.++.- .+.++.
T Consensus 341 DLNalL~~~e~~LA~~~~~lG~~~~------------a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~------ 401 (542)
T PRK13272 341 DLNSLLYHLERTLAQACASSGLAAC------------SQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL------ 401 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc------
Confidence 46888865 67777777775211 2568899999999999999996 5544432 223322
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (846)
.+ .+.+.+++=|+-=.-++ +.|..+.+.+...|..
T Consensus 402 ~~-~~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~ 436 (542)
T PRK13272 402 SE-QVTAAALYPLFAGLASD---DRAKRTADSVRAQLLR 436 (542)
T ss_pred cc-cccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC
Confidence 22 34467777777433333 4566677766666653
No 346
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.99 E-value=1.2e+02 Score=25.05 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003115 498 NDSSASASKLGMPLEKYLNILGECRRKLF 526 (846)
Q Consensus 498 ~~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 526 (846)
.+..++|+.+|+++..+.+.|..+-.||+
T Consensus 24 ~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 24 ITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999988875
No 347
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=23.84 E-value=6.5e+02 Score=30.51 Aligned_cols=173 Identities=13% Similarity=0.029 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCC---CCCc
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKA---PGFL 619 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~---~~~l 619 (846)
-|-.++-+|.-|..+.++.... -.++-.++ .+.|..|.++|+.|+=.|.-+ +|.=|.+ -..|-... .-..
T Consensus 121 ttIRVlGGLLSAHllA~~~~~~---~~~~~~y~-g~LLrLA~dlA~RLLPAF~T~-TGiPy~~vNLk~GV~~~Et~~tct 195 (622)
T KOG2429|consen 121 TTIRVLGGLLSAHLLAKKDPVG---VFLGPDYD-GELLRLAEDLARRLLPAFETP-TGIPYGRVNLKYGVDKGETTETCT 195 (622)
T ss_pred EehhhhhhHHHHHHhhccCccC---ccccCCCC-chHHHHHHHHHHhhcccccCC-CCCCcceeehhcCCCCCCCcceec
Confidence 3567777888887766221100 01111222 368999999999999888643 5543332 12232110 1111
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC-cccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G-gyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
..-+-++.=+-.|-..|||++|-+.|+...+.++.. .+| |..-..- ++..-.+-..|..+=.|--..-+-|+
T Consensus 196 Ag~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~----RS~igLlGn~i---dV~tG~W~~~~sGIGAgiDSfyEYll 268 (622)
T KOG2429|consen 196 AGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSL----RSGIGLLGNHI---DVQTGEWTAPDSGIGAGIDSFYEYLL 268 (622)
T ss_pred ccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhh----cCCCCccccee---eccccceeccccccccchHHHHHHHH
Confidence 122334444556888999999999999888776543 121 1111100 01111112223333344445777788
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 003115 699 RLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (846)
Q Consensus 699 rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 732 (846)
+-|-+.|+ ++|.+.-.+..+++...+++-++
T Consensus 269 K~yILfgd---~e~lemf~ea~~ai~~y~r~~~w 299 (622)
T KOG2429|consen 269 KGYILFGD---PELLEMFNEAYEAIQKYTRKGPW 299 (622)
T ss_pred HHheecCC---HHHHHHHHHHHHHHHHHhhcCCe
Confidence 88989886 78888887777777777766553
No 348
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=23.63 E-value=6.4e+02 Score=31.30 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~-~--dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~ 659 (846)
+.|+.....+.++. +.|++.|.. . +|.+ .-+..|.-=..|..+.+.+..|+|..+++........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~- 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILK- 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-
Confidence 67777777777663 458888875 2 2322 22344445567888889999999999988777666666655421
Q ss_pred CCCcc-cccCCCC--Cc-ccccccCCCCCC---CC------ChHHH---HHHHHHHHHHHhC--CCCchHHHHHHHHHHH
Q 003115 660 EGGGY-FNTTGED--PS-VLLRVKEDHDGA---EP------SGNSV---SVINLVRLASIVA--GSKSDYYRQNAEHSLA 721 (846)
Q Consensus 660 ~~Ggy-f~t~~~~--~~-l~~R~k~~~D~a---~P------S~Nsv---~a~~L~rL~~lt~--~~~~~~y~~~A~~~l~ 721 (846)
. +.+ |.+..+. +. -...+++..+.. .| --|++ +..++.+++.+.+ ++ .++|.+.|+++.+
T Consensus 378 ~-~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~-~~~~~~~a~~l~~ 455 (641)
T COG3408 378 G-FDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEED-AARLEKIARRLKE 455 (641)
T ss_pred c-CCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHH
Confidence 1 111 2221100 00 011122221111 11 24555 5566778888887 22 3678888888888
Q ss_pred HHHHHHH
Q 003115 722 VFETRLK 728 (846)
Q Consensus 722 ~~~~~i~ 728 (846)
.|.....
T Consensus 456 ~F~~~fw 462 (641)
T COG3408 456 SFEAKFW 462 (641)
T ss_pred HHHHHhh
Confidence 8766553
No 349
>PRK05949 RNA polymerase sigma factor; Validated
Probab=23.39 E-value=2.1e+02 Score=32.18 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=36.6
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 460 ~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++.-.||+.... + .+.+++|+.+|++.+.+...+..++++|.+
T Consensus 271 er~Vi~lr~gl~~~e---------------~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGK---------------E-------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456777788885322 1 245789999999999999999999999987
No 350
>PRK12559 transcriptional regulator Spx; Provisional
Probab=23.39 E-value=78 Score=30.78 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=12.7
Q ss_pred EEEEeccCChhhhhhh
Q 003115 142 FLSIGYSTCHWCHVME 157 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me 157 (846)
+..++.++|..|++..
T Consensus 2 i~iY~~~~C~~crkA~ 17 (131)
T PRK12559 2 VVLYTTASCASCRKAK 17 (131)
T ss_pred EEEEeCCCChHHHHHH
Confidence 3457999999999844
No 351
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=23.30 E-value=1.1e+02 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.4
Q ss_pred chHHHHHcCCCHHHHHHHHHHHHHHH
Q 003115 500 SSASASKLGMPLEKYLNILGECRRKL 525 (846)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~~L 525 (846)
..++|+.+|+++..+...+..++++|
T Consensus 29 ~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 29 YAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 46899999999999999999998876
No 352
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=23.27 E-value=1.5e+03 Score=28.01 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCC
Q 003115 223 FPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGG 302 (846)
Q Consensus 223 ~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GG 302 (846)
++..+..-..++..++++..+.|+.=-+++....+.....+...... +....|..-|+
T Consensus 206 ~~~~~~~~~~~~e~~l~~~~~~Wr~w~~~~~~~~~~~~~~~~rS~l~----------------------l~~~~~~~~G~ 263 (612)
T COG3387 206 FRQAGLVLKRGYELILERTTDYWRSWLSKLNPLGRAYASALYRSALV----------------------LKALNYNPTGA 263 (612)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHH----------------------HHHcccCCCCc
Q ss_pred CCCCCCCCChhHHHHH--------------HHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc----EEEE
Q 003115 303 FGSAPKFPRPVEIQMM--------------LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG----FHRY 364 (846)
Q Consensus 303 fg~apKFP~~~~l~~l--------------l~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGG----F~RY 364 (846)
+..+|-+|.|....-. .......+. .+-+...++=|.. +..+ +++|
T Consensus 264 ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~----------~~~a~~~f~~l~~------~~~~~~~~~~~y 327 (612)
T COG3387 264 IVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGY----------KKEALRFFEFLPD------VQTPNGKLYHKY 327 (612)
T ss_pred EEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCC----------HHHHHHHHHHHHH------hhCCCCceeeEE
Q ss_pred EcCCC-----CCC-----CCCchhHHHHHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHHHH------hccCCCCce
Q 003115 365 SVDER-----WHV-----PHFEKMLYDQGQLANVYLDAFSLTKD-----VFYSYICRDILDYLRR------DMIGPGGEI 423 (846)
Q Consensus 365 svD~~-----W~v-----PHFEKMLyDNA~Ll~~ya~Ay~~t~~-----~~y~~~A~~t~~fl~r------~m~~~~Ggf 423 (846)
++|.. |+. --|..++=..|...++...-+...++ ..+...+....+|+.+ .+..|+.++
T Consensus 328 ~~~g~~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 407 (612)
T COG3387 328 SIDGSDLAESWLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDL 407 (612)
T ss_pred ecCCCccccccccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccce
Q ss_pred eeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHH
Q 003115 424 FSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSAS 503 (846)
Q Consensus 424 ysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~ 503 (846)
.= +.+.++++|
T Consensus 408 WE---------------er~g~~~yt------------------------------------------------------ 418 (612)
T COG3387 408 WE---------------ERGGHFTYT------------------------------------------------------ 418 (612)
T ss_pred ec---------------ccCCcccch------------------------------------------------------
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHH
Q 003115 504 ASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYME 583 (846)
Q Consensus 504 a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe 583 (846)
..|.|.||..++......-..+.+ ..|..
T Consensus 419 -------------------------------------~~~~~agLd~A~~lA~~~gd~~~a--------------~~~~~ 447 (612)
T COG3387 419 -------------------------------------KATVYAGLDAAADLAEEFGDKGSA--------------EHWRK 447 (612)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhCCcHHH--------------HHHHH
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003115 584 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY--AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (846)
Q Consensus 584 ~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy--A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (846)
.|.++.+.+.++++..++|.|.+.+.+ .+++. |.+....+=-+.-..|++.+...+.+.+.+..
T Consensus 448 ~ad~ik~~v~~~~~~~~~~~f~r~~~~-------~~~~~vDasll~l~~fg~i~~~D~~~~~t~~~I~~~L~~ 513 (612)
T COG3387 448 TADELKEAVLRRGYAEDGGYFVRSLGR-------KPDDTVDASLLGLVLFGFIPPDDPRILATVEAIERELLV 513 (612)
T ss_pred HHHHHHHHHHHhcccccCCeeehhcCC-------CccccccHHHhhccccCccCCCCHHHHHHHHHHHHHHhh
No 353
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=22.89 E-value=2.3e+02 Score=31.93 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=26.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++++.+|++.+.+.+.-..+..||..
T Consensus 284 Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~ 312 (324)
T PRK07921 284 TLDQIGKLFGLSRERVRQIEREVMSKLRN 312 (324)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999976
No 354
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=22.75 E-value=2.3e+02 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.7
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+.+++++.+|++.+.+.+....++.+|.+
T Consensus 278 Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 278 TLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999986
No 355
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.29 E-value=2.5e+02 Score=30.03 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcE
Q 003115 282 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGF 361 (846)
Q Consensus 282 ~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF 361 (846)
...++++..-|.+. .++...+..+.++-+.....+ +......+...|+.++. +.+|+.
T Consensus 112 ~~~i~kA~~~L~~~----------~~~~~~~Y~lAl~aYAL~la~-------~~~~~~~~~~~L~~~a~-----~~~~~~ 169 (246)
T PF07678_consen 112 ENAINKALNYLERH----------LDNIQDPYTLALVAYALALAG-------DSPQASKLLNKLNSMAT-----TEGGLR 169 (246)
T ss_dssp HHHHHHHHHHHHHH----------HGCTSSHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHCHCE-----ETTTTC
T ss_pred HHHHHHHHHHHHHh----------ccccCCHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHhhh-----hccccC
Confidence 45567777777654 345566666666655544332 12333444455665543 224443
Q ss_pred EEEEcCCCCCCCC---C-chh--HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 003115 362 HRYSVDERWHVPH---F-EKM--LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 428 (846)
Q Consensus 362 ~RYsvD~~W~vPH---F-EKM--LyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~D 428 (846)
| ...+.....+. + ..- +=-.|..|.++.+. ++ ...+..+++||.+.- ...|||.|++|
T Consensus 170 ~-W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~----~~---~~~~~~iv~WL~~qr-~~~Ggf~STQd 233 (246)
T PF07678_consen 170 Y-WSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR----GD---LEEASPIVRWLISQR-NSGGGFGSTQD 233 (246)
T ss_dssp E-E-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHCT-TTTSSTSSHHH
T ss_pred c-ccCCcccccccccccccchHHHHHHHHHHHHHHhc----cc---HHHHHHHHHHHHHhc-CCCCccCcHHH
Confidence 3 34444433222 1 111 11134444444443 44 456899999999854 56899999876
No 356
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=21.13 E-value=2.1e+02 Score=31.56 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHH
Q 003115 453 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKL 525 (846)
Q Consensus 453 i~~~L~----~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L 525 (846)
+.+++. .+..++...||+... ++ .+.+++|+.+|++.+.+.+.+..++++|
T Consensus 243 L~~~L~~L~~rer~Vi~lr~gl~~~---------------~~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kL 297 (298)
T TIGR02997 243 LESLLAELTPRERQVLRLRFGLDGG---------------EP-------LTLAEIGRRLNLSRERVRQIEAKALRKL 297 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCC---------------CC-------cCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 455543 345677788888422 12 2457899999999999999999999887
No 357
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=21.05 E-value=3.2e+02 Score=24.09 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=36.9
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.-++...|+||++..- +.+..+-.|-.+.+|..+.+ ..+ ...+..+.+|..+. .+|..+..
T Consensus 20 ~Ly~~~~sp~~~kv~~-------~L~~~gl~~~~~~v~~~~~~---~~~----~~~np~~~vPvL~~--~~g~~l~e 80 (89)
T cd03055 20 RLYSMRFCPYAQRARL-------VLAAKNIPHEVININLKDKP---DWF----LEKNPQGKVPALEI--DEGKVVYE 80 (89)
T ss_pred EEEeCCCCchHHHHHH-------HHHHcCCCCeEEEeCCCCCc---HHH----HhhCCCCCcCEEEE--CCCCEEEC
Confidence 3367888999998752 23334445777778775432 112 22356778898873 44666553
No 358
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=21.03 E-value=2.1e+02 Score=33.48 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=27.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFDV 528 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~ 528 (846)
+.+++++.+|++.+.+.+.+..++.+|++.
T Consensus 372 Tl~EIA~~LGvS~erVRqie~rAl~KLR~~ 401 (415)
T PRK07598 372 SLAEIGRALDLSRERVRQIESKALQKLRQP 401 (415)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHhch
Confidence 457899999999999999999999999864
No 359
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.98 E-value=1.5e+02 Score=27.82 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=30.8
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
-++.++|+.|++..+ +|++ +.-...+|..+.|.-...+.+.++.+ |-..--+++..|+.
T Consensus 3 iY~~~~C~~c~ka~~----------~L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~ 62 (117)
T TIGR01617 3 VYGSPNCTTCKKARR----------WLEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQS 62 (117)
T ss_pred EEeCCCCHHHHHHHH----------HHHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcc
Confidence 469999999998663 4443 23333455555554333343333332 32333344555443
No 360
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=20.51 E-value=1.2e+03 Score=28.31 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCcee------eeccCCCc
Q 003115 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIF------SAEDADSA 432 (846)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~-~Ggfy------sa~DADs~ 432 (846)
|.+ |.-.+-|+.|---.=.=-|+--+.-.++.|-+|||+.-+.+.++=+.|++.+..-. +|-|. |+-..|.
T Consensus 388 gM~-Y~~~PVyhDPpSN~WfG~Q~Wsm~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~WSGqPDt- 465 (619)
T PF02011_consen 388 GMA-YDEQPVYHDPPSNRWFGMQAWSMERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFEIPSTLEWSGQPDT- 465 (619)
T ss_dssp TEE-EESSSS-TTTTTTTBTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEEEES-----
T ss_pred cee-ccCCcccCCCCCCCcccccchhHHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEecCCCCcccCCCCC-
Q ss_pred cccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHH
Q 003115 433 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 512 (846)
Q Consensus 433 ~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~ 512 (846)
|.+...|++-||+...
T Consensus 466 ---------------------------------------------------W~~s~t~N~nLHV~V~------------- 481 (619)
T PF02011_consen 466 ---------------------------------------------------WTGSPTGNPNLHVTVT------------- 481 (619)
T ss_dssp ----------------------------------------------------TTS----TTEEEEEE-------------
T ss_pred ---------------------------------------------------ccCCCCCCCceEEEEe-------------
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 003115 513 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 592 (846)
Q Consensus 513 ~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l 592 (846)
|--.=+.--+-++.+|+-.+...++ .+....|+++++.|
T Consensus 482 -------------------------~yg~DvGva~S~AktL~yYAA~sg~----------------~~Ak~~Ak~LLD~i 520 (619)
T PF02011_consen 482 -------------------------DYGQDVGVAGSYAKTLTYYAAKSGD----------------QEAKDTAKQLLDAI 520 (619)
T ss_dssp -------------------------EEE--HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred -------------------------cCCCchhHHHHHHHHHHHHHhhccc----------------HHHHHHHHHHHHHH
Q ss_pred HHhccccCC
Q 003115 593 RRHLYDEQT 601 (846)
Q Consensus 593 ~~~l~d~~~ 601 (846)
.++..|..+
T Consensus 521 W~~~~D~~G 529 (619)
T PF02011_consen 521 WNNYQDDKG 529 (619)
T ss_dssp HHHCECTTC
T ss_pred HHhCCCCCc
No 361
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=1e+03 Score=27.40 Aligned_cols=60 Identities=28% Similarity=0.425 Sum_probs=37.0
Q ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc---cCChHHHHHHHHHH-HHHHHhccCCCCceeeeccCCC
Q 003115 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL---TKDVFYSYICRDIL-DYLRRDMIGPGGEIFSAEDADS 431 (846)
Q Consensus 357 vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~---t~~~~y~~~A~~t~-~fl~r~m~~~~Ggfysa~DADs 431 (846)
-.|||-. .-.+.|| |+.+|+..-.+ -+++.|..+-++++ .||. .|.+|+|||+--.+..+
T Consensus 135 PeGGfgG----GPGQl~H----------LA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~-slK~~dGgFrmh~~GE~ 198 (423)
T KOG0365|consen 135 PEGGFGG----GPGQLPH----------LAPTYAAVNALCLCGSEDAYSSINREKLYQFLF-SLKDPDGGFRMHVEGEV 198 (423)
T ss_pred CCCCCCC----CCccchh----------hhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHH-HhcCCCCCeEeecCCcc
Confidence 3566543 3556787 45555543222 23456666666654 5555 59999999998776554
No 362
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=20.13 E-value=7.9e+02 Score=26.31 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=79.9
Q ss_pred CCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhccc---CCHHHHHHHhcCeEEEEEcCCCCc-cHHHHHHHH
Q 003115 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTY 194 (846)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf---~d~eVa~~ln~~FV~vkvD~ee~p-~~~~~y~~~ 194 (846)
.|-.|+.+.++-++.|++.|---++.+++--=. + ....+| +++++.+.++.. + ..-....+ -+...+...
T Consensus 88 ~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~-~--~~~~v~~~at~~~~~~~l~~~-~--~~~~~g~i~G~~g~ll~~ 161 (238)
T TIGR00161 88 PPAVVYDMTNAIVEWMVRNNSRELISFNGMVVR-E--KSQPVFGAANSQELIERLKDL-I--EIFPFGNLNGISGTLLTR 161 (238)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCC-C--CCCcEEEEECCHHHHHHHHHh-c--CcCCCCEEechhHHHHHH
Confidence 445699999999999999998777777652222 1 223333 478889888765 1 11111121 122333333
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHHHHHHHHHHh
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAFAIEQLSEAL 267 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~~~~~l~~~~ 267 (846)
+ ...|+|..+++..- .+|+| . ...=..+|+.+.+.+. =+-++|++.|+++.+.+++..
T Consensus 162 a----~~~gi~~i~Ll~et------~~~~P-D----P~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el~ 221 (238)
T TIGR00161 162 C----AVNDIPAICLLAET------LGPYP-D----PRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKLA 221 (238)
T ss_pred H----HHcCCCEEEEEEeC------CCCCC-C----HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3 34589999998654 23444 1 1245667777777764 478899999988888777643
No 363
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.08 E-value=4.7e+02 Score=31.55 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=53.5
Q ss_pred hcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 136 KRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 136 ~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
+-.+|| ++.|..+.|.+|..++. .+ .++++ |++..-....|..+.+++.+.| +..-.|+++|++.+|
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~-~l--~e~~~-~s~~i~~~~~~~~~~~~~~~~~--------~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQS-FL--GEFAS-LSEKLNSEAVNRGEEPESETLP--------KITKLPTVALLDDDG 430 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHH-HH--HHHHh-cCCcEEEEEeccccchhhHhhc--------CCCcCCEEEEEeCCC
Confidence 456775 44566678999998875 22 24443 3344333345666555665655 555679999998666
Q ss_pred ce---eccccccCCCCCCCcccHHHHHHHHHHH
Q 003115 215 KP---LMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 215 ~~---~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
+. .|. .+|.. ..|-.++..|...
T Consensus 431 ~~~~i~f~--g~P~G-----~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 431 NYTGLKFH--GVPSG-----HELNSFILALYNA 456 (555)
T ss_pred cccceEEE--ecCcc-----HhHHHHHHHHHHh
Confidence 42 221 14533 3577777766533
Done!