Query 003115
Match_columns 846
No_of_seqs 393 out of 1810
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ira_A Conserved protein; meth 100.0 3E-45 1E-49 367.5 17.7 168 101-268 2-169 (173)
2 2gz6_A N-acetyl-D-glucosamine 100.0 6.1E-34 2.1E-38 317.8 21.7 249 347-725 22-272 (388)
3 1fp3_A N-acyl-D-glucosamine 2- 100.0 4E-33 1.4E-37 313.2 23.1 335 285-698 19-391 (402)
4 2zbl_A Putative isomerase; N-a 100.0 5.8E-31 2E-35 298.3 23.4 304 287-730 19-355 (421)
5 3gt5_A N-acetylglucosamine 2-e 99.9 5.5E-26 1.9E-30 256.1 20.2 337 340-698 14-387 (402)
6 1fp3_A N-acyl-D-glucosamine 2- 99.9 5E-24 1.7E-28 239.3 24.7 305 341-727 19-350 (402)
7 2dlx_A UBX domain-containing p 99.9 5.2E-23 1.8E-27 202.3 13.3 124 100-242 10-135 (153)
8 2zbl_A Putative isomerase; N-a 99.9 4.5E-22 1.5E-26 225.4 21.9 246 353-727 27-289 (421)
9 2gz6_A N-acetyl-D-glucosamine 99.9 1.3E-20 4.5E-25 210.0 24.0 293 334-698 72-381 (388)
10 2zzr_A Unsaturated glucuronyl 99.8 2.1E-20 7.2E-25 209.4 20.8 244 334-727 86-346 (397)
11 2ahf_A Unsaturated glucuronyl 99.8 6E-19 2.1E-23 196.7 18.9 245 334-727 60-321 (377)
12 3gt5_A N-acetylglucosamine 2-e 99.8 5E-19 1.7E-23 199.3 17.0 156 545-729 53-211 (402)
13 3ph9_A Anterior gradient prote 99.8 2.1E-19 7.1E-24 176.2 11.0 121 118-247 24-146 (151)
14 3k7x_A LIN0763 protein; Q92DQ0 99.7 4.3E-16 1.5E-20 172.4 26.9 242 314-723 51-298 (349)
15 3f9u_A Putative exported cytoc 99.7 3.4E-17 1.2E-21 161.6 12.1 125 118-248 27-171 (172)
16 2ju5_A Thioredoxin disulfide i 99.7 4E-17 1.4E-21 159.2 10.1 123 99-223 9-136 (154)
17 3fk8_A Disulphide isomerase; A 99.5 2.7E-14 9.2E-19 134.4 9.2 112 121-241 12-131 (133)
18 3h7l_A Endoglucanase; dehydrog 99.5 3.7E-13 1.3E-17 156.6 15.9 148 544-725 250-397 (586)
19 2lst_A Thioredoxin; structural 99.2 9.6E-15 3.3E-19 136.8 0.0 98 120-226 2-105 (130)
20 3k7x_A LIN0763 protein; Q92DQ0 99.4 6.8E-12 2.3E-16 138.8 20.7 152 547-727 95-249 (349)
21 2kuc_A Putative disulphide-iso 99.4 5.7E-13 1.9E-17 124.5 9.8 92 120-219 8-102 (130)
22 2ahf_A Unsaturated glucuronyl 99.3 7.3E-11 2.5E-15 131.6 21.8 250 334-704 106-368 (377)
23 2fwh_A Thiol:disulfide interch 99.3 1.6E-12 5.4E-17 123.2 6.8 108 121-241 16-126 (134)
24 2zzr_A Unsaturated glucuronyl 99.3 5E-11 1.7E-15 133.6 19.1 211 334-658 132-348 (397)
25 3pmm_A Putative cytoplasmic pr 99.3 3.9E-11 1.3E-15 134.3 15.9 177 507-728 20-207 (382)
26 2ec4_A FAS-associated factor 1 99.2 6.6E-11 2.2E-15 118.9 11.4 120 120-246 32-171 (178)
27 3k11_A Putative glycosyl hydro 99.2 6.6E-11 2.3E-15 134.3 11.7 201 493-728 12-241 (445)
28 1sen_A Thioredoxin-like protei 99.2 6.9E-11 2.4E-15 116.4 9.6 91 118-219 27-119 (164)
29 3dml_A Putative uncharacterize 99.1 2.5E-11 8.6E-16 113.6 4.6 91 138-244 18-111 (116)
30 1ep7_A Thioredoxin CH1, H-type 99.1 1.1E-10 3.7E-15 105.6 8.7 87 121-219 7-93 (112)
31 1nc5_A Hypothetical protein YT 99.1 4.7E-10 1.6E-14 125.0 13.6 142 542-728 36-180 (373)
32 3pmm_A Putative cytoplasmic pr 99.1 7.9E-09 2.7E-13 115.6 23.4 149 547-727 173-333 (382)
33 1ti3_A Thioredoxin H, PTTRXH1; 99.1 2.9E-10 9.8E-15 102.9 9.2 103 121-242 9-111 (113)
34 1nc5_A Hypothetical protein YT 99.1 6.2E-09 2.1E-13 116.0 21.5 257 310-725 42-313 (373)
35 2l57_A Uncharacterized protein 99.1 1.3E-10 4.3E-15 108.1 6.3 76 133-219 21-98 (126)
36 3hxs_A Thioredoxin, TRXP; elec 99.1 2.8E-10 9.5E-15 107.7 8.7 77 137-224 50-126 (141)
37 3gnj_A Thioredoxin domain prot 99.1 5.9E-10 2E-14 100.5 10.2 83 125-219 8-91 (111)
38 3f3q_A Thioredoxin-1; His TAG, 99.0 3.5E-10 1.2E-14 103.0 8.6 80 127-219 13-92 (109)
39 3zzx_A Thioredoxin; oxidoreduc 99.0 2.9E-10 1E-14 104.0 8.0 77 128-219 12-88 (105)
40 2l5l_A Thioredoxin; structural 99.0 3E-10 1E-14 107.5 8.2 72 136-218 36-107 (136)
41 1nsw_A Thioredoxin, TRX; therm 99.0 1.2E-10 4.3E-15 104.0 5.2 79 129-219 8-86 (105)
42 1xfl_A Thioredoxin H1; AT3G510 99.0 3.9E-10 1.3E-14 105.5 8.1 86 121-219 21-106 (124)
43 3tco_A Thioredoxin (TRXA-1); d 99.0 3E-10 1E-14 101.7 7.0 79 129-219 12-90 (109)
44 3qfa_C Thioredoxin; protein-pr 99.0 4.8E-10 1.6E-14 103.3 8.5 79 128-219 19-99 (116)
45 1dby_A Chloroplast thioredoxin 99.0 7.8E-10 2.7E-14 99.1 9.6 79 129-219 9-88 (107)
46 2vm1_A Thioredoxin, thioredoxi 99.0 4.9E-10 1.7E-14 102.1 7.9 86 121-219 11-96 (118)
47 1syr_A Thioredoxin; SGPP, stru 99.0 4.7E-10 1.6E-14 102.2 7.2 92 115-219 3-94 (112)
48 2trx_A Thioredoxin; electron t 99.0 6.6E-10 2.3E-14 99.8 8.0 74 134-219 16-89 (108)
49 3d22_A TRXH4, thioredoxin H-ty 99.0 5.4E-10 1.9E-14 105.6 7.7 86 121-219 29-114 (139)
50 2voc_A Thioredoxin; electron t 99.0 5.1E-10 1.7E-14 102.1 7.0 77 130-219 10-86 (112)
51 1w4v_A Thioredoxin, mitochondr 99.0 9.2E-10 3.1E-14 101.6 8.8 80 128-219 20-100 (119)
52 2dml_A Protein disulfide-isome 99.0 1.4E-09 4.6E-14 101.4 9.8 72 134-216 31-102 (130)
53 2vlu_A Thioredoxin, thioredoxi 99.0 1.1E-09 3.8E-14 100.8 8.8 80 127-219 23-102 (122)
54 3k11_A Putative glycosyl hydro 99.0 1.7E-08 5.9E-13 114.5 19.7 268 309-727 82-365 (445)
55 3ul3_B Thioredoxin, thioredoxi 99.0 1.6E-10 5.6E-15 108.1 2.5 80 128-219 32-111 (128)
56 1wmj_A Thioredoxin H-type; str 99.0 5.7E-10 2E-14 103.6 6.0 86 121-219 19-104 (130)
57 2yzu_A Thioredoxin; redox prot 98.9 9.1E-10 3.1E-14 98.3 7.0 79 129-219 9-87 (109)
58 2i4a_A Thioredoxin; acidophIle 98.9 1.1E-09 3.8E-14 97.8 7.6 73 135-219 17-89 (107)
59 2av4_A Thioredoxin-like protei 98.9 8.9E-10 3E-14 108.0 7.1 70 136-217 39-108 (160)
60 1oaz_A Thioredoxin 1; immune s 98.9 2.2E-10 7.5E-15 107.2 2.7 78 133-219 16-104 (123)
61 3d6i_A Monothiol glutaredoxin- 98.9 1.8E-09 6.1E-14 97.9 8.6 72 136-219 19-91 (112)
62 3aps_A DNAJ homolog subfamily 98.9 1.3E-09 4.5E-14 100.3 7.6 78 128-216 10-88 (122)
63 3hz4_A Thioredoxin; NYSGXRC, P 98.9 3.3E-09 1.1E-13 101.0 10.6 80 128-219 13-93 (140)
64 2f51_A Thioredoxin; electron t 98.9 1.4E-09 4.7E-14 100.6 7.7 80 128-219 12-95 (118)
65 1fb6_A Thioredoxin M; electron 98.9 1.6E-09 5.4E-14 96.5 7.7 74 134-219 14-87 (105)
66 1t00_A Thioredoxin, TRX; redox 98.9 1.5E-09 5E-14 98.3 7.5 76 132-219 17-92 (112)
67 1gh2_A Thioredoxin-like protei 98.9 2.3E-09 7.8E-14 96.5 8.7 78 127-219 12-89 (107)
68 2dj1_A Protein disulfide-isome 98.9 1.3E-09 4.4E-14 102.8 7.4 78 128-217 24-104 (140)
69 3m9j_A Thioredoxin; oxidoreduc 98.9 2.3E-09 8E-14 95.5 8.5 70 137-219 19-88 (105)
70 4euy_A Uncharacterized protein 98.9 3E-10 1E-14 102.3 2.5 77 130-219 10-86 (105)
71 3die_A Thioredoxin, TRX; elect 98.9 1.2E-09 4.2E-14 97.3 6.4 78 129-219 11-88 (106)
72 3gix_A Thioredoxin-like protei 98.9 1.8E-09 6.1E-14 104.7 7.8 78 128-217 11-90 (149)
73 1x5d_A Protein disulfide-isome 98.9 3.5E-09 1.2E-13 98.6 9.6 73 134-218 21-97 (133)
74 2j23_A Thioredoxin; immune pro 98.9 1.8E-09 6.1E-14 100.1 7.3 80 128-219 23-103 (121)
75 2oe3_A Thioredoxin-3; electron 98.9 1.5E-09 5.1E-14 99.9 6.7 79 127-218 19-97 (114)
76 2o8v_B Thioredoxin 1; disulfid 98.9 1.5E-09 5.2E-14 102.1 6.6 73 135-219 37-109 (128)
77 2ppt_A Thioredoxin-2; thiredox 98.9 3.4E-09 1.2E-13 103.3 9.2 80 128-219 54-133 (155)
78 1xwb_A Thioredoxin; dimerizati 98.9 3.1E-09 1.1E-13 94.6 8.3 71 137-219 19-89 (106)
79 3p2a_A Thioredoxin 2, putative 98.9 3.1E-09 1.1E-13 101.7 8.8 80 128-219 45-124 (148)
80 1r26_A Thioredoxin; redox-acti 98.9 3.7E-09 1.3E-13 99.2 9.0 78 129-219 28-105 (125)
81 2e0q_A Thioredoxin; electron t 98.9 2E-09 7E-14 95.0 6.7 78 129-219 7-84 (104)
82 2wz9_A Glutaredoxin-3; protein 98.9 3.4E-09 1.2E-13 102.5 8.6 79 128-219 20-100 (153)
83 1thx_A Thioredoxin, thioredoxi 98.9 3.3E-09 1.1E-13 95.9 7.8 73 135-219 22-94 (115)
84 2i1u_A Thioredoxin, TRX, MPT46 98.8 1.7E-09 6E-14 99.0 5.2 77 131-219 23-99 (121)
85 2vim_A Thioredoxin, TRX; thior 98.8 6.7E-09 2.3E-13 92.1 8.9 78 129-219 8-87 (104)
86 2xc2_A Thioredoxinn; oxidoredu 98.8 5.9E-09 2E-13 95.4 8.4 75 128-219 25-100 (117)
87 1qgv_A Spliceosomal protein U5 98.8 9.6E-09 3.3E-13 98.7 9.3 79 128-218 11-91 (142)
88 1mek_A Protein disulfide isome 98.8 2.1E-09 7E-14 97.7 4.4 77 129-217 15-94 (120)
89 2dj3_A Protein disulfide-isome 98.8 5.8E-09 2E-13 97.4 7.2 69 136-215 23-93 (133)
90 3cxg_A Putative thioredoxin; m 98.8 3.5E-09 1.2E-13 100.2 5.4 75 128-218 32-110 (133)
91 2pu9_C TRX-F, thioredoxin F-ty 98.8 1.2E-08 4.2E-13 92.3 8.8 70 137-219 23-93 (111)
92 3apq_A DNAJ homolog subfamily 98.8 1.3E-08 4.3E-13 103.7 9.8 81 127-219 103-183 (210)
93 3qou_A Protein YBBN; thioredox 98.8 1.1E-08 3.9E-13 108.5 9.1 72 136-219 24-95 (287)
94 2l6c_A Thioredoxin; oxidoreduc 98.8 4.6E-09 1.6E-13 95.6 4.7 80 133-225 14-94 (110)
95 3dxb_A Thioredoxin N-terminall 98.7 1.2E-08 4E-13 105.0 7.3 80 128-219 19-99 (222)
96 1zma_A Bacterocin transport ac 98.7 4.4E-09 1.5E-13 96.6 3.6 87 125-219 16-102 (118)
97 1faa_A Thioredoxin F; electron 98.7 2.6E-08 8.8E-13 92.0 8.7 71 136-219 35-106 (124)
98 3uvt_A Thioredoxin domain-cont 98.7 3.5E-08 1.2E-12 88.5 8.7 67 138-219 21-93 (111)
99 3hcz_A Possible thiol-disulfid 98.7 2E-08 7E-13 94.5 7.3 99 136-245 29-145 (148)
100 2yj7_A LPBCA thioredoxin; oxid 98.1 2E-09 6.8E-14 95.4 0.0 75 133-219 14-88 (106)
101 2qsi_A Putative hydrogenase ex 98.7 1.5E-08 5.3E-13 97.3 5.9 95 119-225 13-111 (137)
102 3h79_A Thioredoxin-like protei 98.7 3.4E-08 1.1E-12 92.0 8.1 70 136-216 31-105 (127)
103 1v98_A Thioredoxin; oxidoreduc 98.6 3.4E-08 1.2E-12 93.5 7.4 80 128-219 40-119 (140)
104 2qgv_A Hydrogenase-1 operon pr 98.6 1.2E-08 4.2E-13 98.4 4.3 101 110-224 8-112 (140)
105 2dj0_A Thioredoxin-related tra 98.6 4.3E-08 1.5E-12 92.6 8.0 81 134-226 22-110 (137)
106 2djj_A PDI, protein disulfide- 98.6 3.1E-08 1.1E-12 90.7 6.8 67 135-215 22-93 (121)
107 1x5e_A Thioredoxin domain cont 98.6 4.2E-08 1.4E-12 90.9 7.3 66 140-217 24-90 (126)
108 1z6n_A Hypothetical protein PA 98.6 5.1E-08 1.8E-12 96.7 7.4 95 136-246 52-146 (167)
109 2b1k_A Thiol:disulfide interch 98.6 5.3E-08 1.8E-12 94.6 7.3 78 136-219 49-141 (168)
110 2b5x_A YKUV protein, TRXY; thi 98.6 1E-07 3.5E-12 89.5 9.0 85 132-219 23-126 (148)
111 3ewl_A Uncharacterized conserv 98.6 4.5E-08 1.5E-12 92.1 6.0 84 136-219 25-125 (142)
112 4evm_A Thioredoxin family prot 98.6 5.1E-08 1.7E-12 89.8 6.1 81 136-219 20-120 (138)
113 3idv_A Protein disulfide-isome 98.6 6E-08 2E-12 99.5 7.2 79 128-218 22-103 (241)
114 1fo5_A Thioredoxin; disulfide 98.6 5.1E-08 1.8E-12 83.4 5.6 64 139-216 3-66 (85)
115 3or5_A Thiol:disulfide interch 98.6 1.6E-07 5.6E-12 90.2 9.7 81 136-219 32-132 (165)
116 1lu4_A Soluble secreted antige 98.6 8.6E-08 2.9E-12 88.8 7.4 81 133-217 19-113 (136)
117 1wou_A Thioredoxin -related pr 98.6 9.8E-08 3.4E-12 88.7 7.8 79 129-219 13-107 (123)
118 1nho_A Probable thioredoxin; b 98.5 7.5E-08 2.6E-12 82.4 5.9 63 140-216 3-65 (85)
119 3raz_A Thioredoxin-related pro 98.5 1.3E-07 4.4E-12 90.3 8.0 82 134-219 20-121 (151)
120 2lja_A Putative thiol-disulfid 98.5 2.1E-07 7.2E-12 88.3 9.2 81 136-219 28-124 (152)
121 3emx_A Thioredoxin; structural 98.5 6.7E-08 2.3E-12 91.4 5.6 88 128-225 23-114 (135)
122 1zzo_A RV1677; thioredoxin fol 98.5 1.9E-07 6.6E-12 86.1 8.6 81 133-217 20-115 (136)
123 3gl3_A Putative thiol:disulfid 98.5 3.1E-07 1E-11 87.2 10.1 89 134-225 24-128 (152)
124 1a8l_A Protein disulfide oxido 98.5 1.7E-07 5.8E-12 95.6 8.0 80 127-218 122-206 (226)
125 2lrn_A Thiol:disulfide interch 98.5 5.7E-07 2E-11 85.9 11.1 80 137-219 28-125 (152)
126 3erw_A Sporulation thiol-disul 98.5 1E-07 3.6E-12 89.1 5.8 80 137-219 33-130 (145)
127 2f9s_A Thiol-disulfide oxidore 98.5 3.3E-07 1.1E-11 87.1 9.1 83 134-219 22-119 (151)
128 3hdc_A Thioredoxin family prot 98.5 3.9E-07 1.3E-11 87.8 9.1 82 134-226 37-139 (158)
129 3kcm_A Thioredoxin family prot 98.5 4.2E-07 1.4E-11 86.4 9.1 102 134-242 24-142 (154)
130 3kh7_A Thiol:disulfide interch 98.4 3.2E-07 1.1E-11 90.7 8.3 82 132-219 52-148 (176)
131 3fkf_A Thiol-disulfide oxidore 98.4 2.8E-07 9.6E-12 86.6 7.6 81 137-220 32-131 (148)
132 2h30_A Thioredoxin, peptide me 98.4 7E-08 2.4E-12 92.9 2.8 74 132-219 32-137 (164)
133 1i5g_A Tryparedoxin II; electr 98.4 2.4E-07 8.3E-12 87.5 6.2 83 133-219 23-125 (144)
134 1kng_A Thiol:disulfide interch 98.4 9.2E-07 3.1E-11 84.1 10.0 81 133-219 37-133 (156)
135 3kp8_A Vkorc1/thioredoxin doma 98.4 9.2E-08 3.1E-12 87.5 2.5 73 128-218 2-78 (106)
136 3eur_A Uncharacterized protein 98.4 2.5E-07 8.6E-12 87.3 5.6 85 136-220 29-130 (142)
137 3s9f_A Tryparedoxin; thioredox 98.4 5.3E-07 1.8E-11 88.2 8.0 83 134-219 44-145 (165)
138 3ha9_A Uncharacterized thiored 98.4 7.5E-07 2.6E-11 86.1 8.8 82 135-223 34-149 (165)
139 3idv_A Protein disulfide-isome 98.4 5.9E-07 2E-11 92.1 8.3 79 128-218 137-218 (241)
140 1o8x_A Tryparedoxin, TRYX, TXN 98.4 5.5E-07 1.9E-11 85.4 7.3 83 133-219 23-125 (146)
141 2ls5_A Uncharacterized protein 97.7 5.2E-08 1.8E-12 93.8 0.0 107 129-243 24-148 (159)
142 3q6o_A Sulfhydryl oxidase 1; p 98.3 8E-07 2.7E-11 92.3 8.8 70 135-215 27-101 (244)
143 3lor_A Thiol-disulfide isomera 98.3 5.8E-07 2E-11 86.0 7.2 84 133-219 25-136 (160)
144 1o73_A Tryparedoxin; electron 98.3 8.1E-07 2.8E-11 83.6 7.9 82 134-219 24-125 (144)
145 3eyt_A Uncharacterized protein 98.3 1.1E-06 3.7E-11 84.1 8.5 84 133-219 23-133 (158)
146 3ed3_A Protein disulfide-isome 98.3 1.3E-06 4.4E-11 94.3 9.8 85 119-214 15-102 (298)
147 2es7_A Q8ZP25_salty, putative 98.3 1.1E-07 3.6E-12 91.8 1.1 78 129-219 25-106 (142)
148 1ilo_A Conserved hypothetical 98.3 8E-07 2.7E-11 74.8 6.4 65 141-223 2-66 (77)
149 2l5o_A Putative thioredoxin; s 98.3 2E-06 6.8E-11 81.6 9.9 81 136-219 26-122 (153)
150 3h7l_A Endoglucanase; dehydrog 98.3 1.4E-05 4.8E-10 93.3 18.9 184 335-654 190-397 (586)
151 2lrt_A Uncharacterized protein 98.3 1.9E-06 6.5E-11 82.7 9.7 80 137-219 34-129 (152)
152 3lwa_A Secreted thiol-disulfid 98.3 1.3E-06 4.5E-11 86.1 8.6 85 132-219 53-162 (183)
153 2dbc_A PDCL2, unnamed protein 98.3 1.8E-06 6.1E-11 81.8 9.1 67 137-219 29-95 (135)
154 1sji_A Calsequestrin 2, calseq 98.3 8.8E-07 3E-11 97.2 7.3 79 127-217 17-102 (350)
155 2ywm_A Glutaredoxin-like prote 98.3 1.2E-06 4.2E-11 89.6 7.8 75 127-216 124-199 (229)
156 2r2j_A Thioredoxin domain-cont 98.3 1.1E-06 3.9E-11 97.5 8.1 76 130-217 14-95 (382)
157 2lus_A Thioredoxion; CR-Trp16, 97.6 1.4E-07 4.8E-12 88.5 0.0 83 136-221 23-126 (143)
158 3ia1_A THIO-disulfide isomeras 98.2 8.9E-07 3E-11 84.3 5.4 78 139-219 31-125 (154)
159 3iv4_A Putative oxidoreductase 98.2 2.2E-06 7.5E-11 79.5 7.1 78 128-219 14-96 (112)
160 3f8u_A Protein disulfide-isome 98.2 1.2E-06 4.1E-11 99.9 6.4 70 134-215 366-437 (481)
161 2b5e_A Protein disulfide-isome 98.2 2.7E-06 9.1E-11 97.8 9.0 74 130-215 23-97 (504)
162 3fw2_A Thiol-disulfide oxidore 98.2 7.5E-06 2.6E-10 77.8 10.2 81 137-220 32-133 (150)
163 4fo5_A Thioredoxin-like protei 98.2 5.6E-06 1.9E-10 78.0 9.2 77 137-219 31-129 (143)
164 2e7p_A Glutaredoxin; thioredox 98.1 4.1E-06 1.4E-10 76.4 7.5 76 129-219 11-86 (116)
165 2cvb_A Probable thiol-disulfid 98.1 5.9E-06 2E-10 81.7 8.8 81 136-219 31-132 (188)
166 1jfu_A Thiol:disulfide interch 98.1 1.2E-05 4E-10 79.3 10.5 81 136-219 58-159 (186)
167 3ga4_A Dolichyl-diphosphooligo 98.1 4.6E-06 1.6E-10 83.6 7.0 71 136-217 35-117 (178)
168 3t58_A Sulfhydryl oxidase 1; o 98.0 8.5E-06 2.9E-10 94.6 9.5 72 135-217 27-106 (519)
169 1a0r_P Phosducin, MEKA, PP33; 98.0 2.7E-06 9.3E-11 89.5 4.7 69 137-219 132-200 (245)
170 2ywi_A Hypothetical conserved 98.0 1.8E-05 6.2E-10 78.5 10.2 81 137-220 44-147 (196)
171 1ttz_A Conserved hypothetical 98.0 7.3E-06 2.5E-10 72.5 6.5 58 142-218 3-60 (87)
172 3qcp_A QSOX from trypanosoma b 98.0 3.7E-06 1.3E-10 96.1 5.7 69 136-215 40-116 (470)
173 3f8u_A Protein disulfide-isome 98.0 6.1E-06 2.1E-10 94.0 6.9 75 131-217 11-88 (481)
174 2b5e_A Protein disulfide-isome 98.0 8.7E-06 3E-10 93.5 8.1 68 135-216 373-443 (504)
175 3us3_A Calsequestrin-1; calciu 97.9 1E-05 3.5E-10 89.5 7.8 78 131-217 23-104 (367)
176 2hyx_A Protein DIPZ; thioredox 97.9 1.4E-05 5E-10 88.2 8.7 84 133-219 77-180 (352)
177 3drn_A Peroxiredoxin, bacterio 97.9 3.3E-05 1.1E-09 74.6 10.2 79 137-219 27-126 (161)
178 2hls_A Protein disulfide oxido 97.9 1.7E-05 5.9E-10 82.8 8.8 77 128-218 127-208 (243)
179 2rli_A SCO2 protein homolog, m 97.9 2.3E-05 7.9E-10 75.7 8.8 79 137-219 25-145 (171)
180 3u5r_E Uncharacterized protein 97.9 3.4E-05 1.2E-09 78.9 9.9 82 137-221 57-161 (218)
181 3e6u_A LANC-like protein 1; al 97.9 0.00028 9.5E-09 79.5 18.1 274 379-723 73-367 (411)
182 3apo_A DNAJ homolog subfamily 97.9 1.6E-05 5.6E-10 96.2 8.5 79 128-218 664-743 (780)
183 2ggt_A SCO1 protein homolog, m 97.9 1.2E-05 3.9E-10 77.2 5.3 80 137-219 22-142 (164)
184 2vup_A Glutathione peroxidase- 97.8 5.4E-05 1.8E-09 75.4 9.9 80 137-219 47-166 (190)
185 3uem_A Protein disulfide-isome 97.8 1.2E-05 4.1E-10 88.0 5.6 69 134-215 263-334 (361)
186 2p5q_A Glutathione peroxidase 97.8 6.2E-05 2.1E-09 72.5 10.0 43 137-182 31-74 (170)
187 3apo_A DNAJ homolog subfamily 97.8 2E-05 6.9E-10 95.4 7.9 80 126-217 121-200 (780)
188 2trc_P Phosducin, MEKA, PP33; 97.8 5.3E-06 1.8E-10 85.6 2.2 68 138-219 120-187 (217)
189 2djk_A PDI, protein disulfide- 97.8 4E-05 1.4E-09 72.2 7.9 77 129-217 14-93 (133)
190 3cmi_A Peroxiredoxin HYR1; thi 97.8 4E-05 1.4E-09 74.7 7.3 79 137-219 31-149 (171)
191 3kij_A Probable glutathione pe 97.7 9.2E-05 3.1E-09 72.9 9.5 80 137-219 37-151 (180)
192 3gzk_A Cellulase; fold from GH 97.7 0.00022 7.4E-09 83.1 13.7 90 543-650 242-334 (537)
193 2bmx_A Alkyl hydroperoxidase C 97.7 7.7E-05 2.6E-09 74.6 8.0 79 137-219 44-147 (195)
194 1xvw_A Hypothetical protein RV 97.7 0.00012 4E-09 70.1 8.9 97 137-242 34-156 (160)
195 2v1m_A Glutathione peroxidase; 97.7 0.00018 6.2E-09 69.1 10.2 43 137-182 30-73 (169)
196 3evi_A Phosducin-like protein 97.6 2.1E-05 7E-10 73.4 3.1 66 138-219 23-88 (118)
197 2k8s_A Thioredoxin; dimer, str 97.6 2.4E-05 8.3E-10 66.9 3.2 61 142-219 4-68 (80)
198 1we0_A Alkyl hydroperoxide red 97.6 0.00011 3.7E-09 72.7 8.0 79 137-219 30-134 (187)
199 1ks8_A Endo-B-1,4-glucanase; c 97.6 0.00039 1.3E-08 78.8 13.3 143 544-733 150-294 (433)
200 3dwv_A Glutathione peroxidase- 97.6 7.2E-05 2.5E-09 74.3 6.2 42 137-181 45-87 (187)
201 2fgx_A Putative thioredoxin; N 97.6 6.6E-05 2.2E-09 69.0 5.2 65 139-218 29-93 (107)
202 2c0g_A ERP29 homolog, windbeut 97.5 0.00015 5.1E-09 76.3 8.2 68 131-215 26-105 (248)
203 2ywm_A Glutaredoxin-like prote 97.5 0.00037 1.3E-08 71.0 10.8 69 136-212 18-90 (229)
204 2jsy_A Probable thiol peroxida 97.5 0.0002 6.8E-09 69.2 8.4 99 137-243 43-164 (167)
205 1a8l_A Protein disulfide oxido 97.5 0.00016 5.6E-09 73.3 7.8 66 137-215 21-89 (226)
206 1zof_A Alkyl hydroperoxide-red 97.5 0.00013 4.5E-09 73.0 6.6 80 137-220 32-139 (198)
207 2p31_A CL683, glutathione pero 97.5 0.00011 3.7E-09 72.6 5.9 43 137-182 48-91 (181)
208 1wjk_A C330018D20RIK protein; 97.5 0.00015 5E-09 65.3 6.2 62 137-217 14-77 (100)
209 1xzo_A BSSCO, hypothetical pro 97.5 0.00013 4.5E-09 70.6 6.3 80 137-219 32-151 (174)
210 2f8a_A Glutathione peroxidase 97.4 0.00048 1.6E-08 70.1 10.5 43 137-182 46-89 (208)
211 1ia6_A Cellulase CEL9M; cellul 97.4 0.0015 5E-08 74.3 15.2 86 543-649 152-237 (441)
212 1xvq_A Thiol peroxidase; thior 97.4 0.00049 1.7E-08 67.5 9.8 93 137-242 43-164 (175)
213 1uul_A Tryparedoxin peroxidase 97.4 0.00031 1.1E-08 70.6 8.4 80 137-220 35-143 (202)
214 1qmv_A Human thioredoxin perox 97.4 0.00039 1.3E-08 69.5 8.6 96 137-242 33-159 (197)
215 3kp9_A Vkorc1/thioredoxin doma 97.4 4.4E-05 1.5E-09 82.1 1.7 73 128-218 187-263 (291)
216 1clc_A Endoglucanase CELD; EC: 97.4 0.0018 6E-08 76.9 15.5 90 543-650 286-378 (639)
217 2k6v_A Putative cytochrome C o 97.4 0.0003 1E-08 67.7 7.4 79 137-219 34-152 (172)
218 1zye_A Thioredoxin-dependent p 97.3 0.00038 1.3E-08 71.3 8.1 79 137-220 55-163 (220)
219 2gs3_A PHGPX, GPX-4, phospholi 97.3 0.00049 1.7E-08 68.0 8.6 43 137-182 48-91 (185)
220 2h01_A 2-Cys peroxiredoxin; th 97.3 0.00035 1.2E-08 69.4 7.4 80 137-220 30-137 (192)
221 2obi_A PHGPX, GPX-4, phospholi 97.3 0.00056 1.9E-08 67.3 8.5 43 137-182 46-89 (183)
222 3ztl_A Thioredoxin peroxidase; 97.3 0.00039 1.3E-08 71.3 7.5 80 137-220 68-176 (222)
223 2qc7_A ERP31, ERP28, endoplasm 97.3 0.00062 2.1E-08 71.2 9.2 70 130-215 14-94 (240)
224 1hyu_A AHPF, alkyl hydroperoxi 97.3 0.00043 1.5E-08 80.0 8.6 77 128-219 106-183 (521)
225 3gkn_A Bacterioferritin comigr 97.2 0.00075 2.6E-08 64.7 8.7 80 137-220 34-141 (163)
226 4gqc_A Thiol peroxidase, perox 97.2 0.00047 1.6E-08 67.4 6.6 106 132-244 27-158 (164)
227 2ht9_A Glutaredoxin-2; thiored 97.2 0.00065 2.2E-08 65.6 7.4 76 128-219 39-115 (146)
228 2i81_A 2-Cys peroxiredoxin; st 97.2 0.00069 2.4E-08 69.1 7.8 79 137-220 51-158 (213)
229 4hde_A SCO1/SENC family lipopr 97.1 0.0015 5E-08 64.1 9.6 43 136-181 30-78 (170)
230 2v8i_A Pectate lyase; periplas 97.1 0.33 1.1E-05 54.5 28.6 307 381-725 59-460 (543)
231 1eej_A Thiol:disulfide interch 97.0 0.0019 6.6E-08 65.8 9.9 24 136-159 84-107 (216)
232 2cq9_A GLRX2 protein, glutared 97.0 0.002 6.9E-08 60.6 8.7 76 128-219 17-93 (130)
233 4g2e_A Peroxiredoxin; redox pr 96.9 0.00056 1.9E-08 66.1 4.4 99 136-242 28-154 (157)
234 2b7k_A SCO1 protein; metalloch 96.9 0.0027 9.3E-08 63.7 9.6 22 137-158 40-62 (200)
235 3hd5_A Thiol:disulfide interch 96.9 0.0037 1.3E-07 62.1 10.4 44 136-182 23-66 (195)
236 2hls_A Protein disulfide oxido 96.8 0.0031 1E-07 65.6 8.9 72 128-210 14-93 (243)
237 1kte_A Thioltransferase; redox 96.7 0.0051 1.8E-07 54.7 8.9 75 129-219 3-81 (105)
238 3ixr_A Bacterioferritin comigr 96.7 0.0062 2.1E-07 59.9 9.8 79 137-219 50-156 (179)
239 3gyk_A 27KDA outer membrane pr 96.7 0.0054 1.9E-07 59.6 9.3 23 136-158 20-42 (175)
240 3c1r_A Glutaredoxin-1; oxidize 96.7 0.0046 1.6E-07 57.2 8.2 80 128-219 15-95 (118)
241 1t3b_A Thiol:disulfide interch 96.6 0.0017 5.7E-08 66.2 5.5 24 136-159 84-107 (211)
242 3h93_A Thiol:disulfide interch 96.6 0.0041 1.4E-07 61.7 8.2 38 137-177 24-61 (192)
243 1psq_A Probable thiol peroxida 96.6 0.0039 1.3E-07 60.1 7.9 36 205-243 127-162 (163)
244 3p7x_A Probable thiol peroxida 96.6 0.0043 1.5E-07 60.0 8.0 96 137-242 45-164 (166)
245 2yik_A Endoglucanase; hydrolas 96.6 0.016 5.5E-07 68.4 14.3 86 546-649 219-306 (611)
246 3a2v_A Probable peroxiredoxin; 96.6 0.0038 1.3E-07 65.6 7.9 97 137-242 32-158 (249)
247 3rhb_A ATGRXC5, glutaredoxin-C 96.6 0.0086 2.9E-07 54.4 9.3 78 128-219 9-86 (113)
248 1ego_A Glutaredoxin; electron 96.5 0.0019 6.7E-08 54.9 4.5 66 142-218 3-70 (85)
249 2c0d_A Thioredoxin peroxidase 96.5 0.0026 8.8E-08 65.4 6.2 80 137-220 55-162 (221)
250 1v58_A Thiol:disulfide interch 96.5 0.0012 4.2E-08 68.6 3.3 24 136-159 95-118 (241)
251 1tf4_A T. fusca endo/EXO-cellu 96.4 0.013 4.4E-07 69.1 12.1 85 545-649 152-240 (605)
252 2hze_A Glutaredoxin-1; thiored 96.4 0.0026 8.8E-08 58.2 4.8 80 128-219 9-88 (114)
253 2xfg_A Endoglucanase 1; hydrol 96.4 0.031 1.1E-06 63.9 14.8 84 545-648 173-259 (466)
254 2g0d_A Nisin biosynthesis prot 96.4 0.057 1.9E-06 60.1 16.7 131 546-718 209-352 (409)
255 1h75_A Glutaredoxin-like prote 96.4 0.0046 1.6E-07 52.2 6.0 60 142-218 3-62 (81)
256 3me7_A Putative uncharacterize 96.3 0.014 4.8E-07 56.8 9.9 79 137-219 27-142 (170)
257 2lqo_A Putative glutaredoxin R 96.3 0.01 3.5E-07 52.8 7.9 63 142-219 6-69 (92)
258 1g87_A Endocellulase 9G; endog 96.3 0.078 2.7E-06 62.6 17.5 86 544-649 151-238 (614)
259 3msz_A Glutaredoxin 1; alpha-b 96.2 0.0064 2.2E-07 52.0 5.9 65 140-218 4-73 (89)
260 3nzn_A Glutaredoxin; structura 96.2 0.015 5.3E-07 51.9 8.6 68 141-218 23-90 (103)
261 3h8q_A Thioredoxin reductase 3 96.2 0.017 5.9E-07 52.8 8.9 77 128-219 7-83 (114)
262 2yzh_A Probable thiol peroxida 96.0 0.0069 2.3E-07 58.7 5.9 20 137-156 46-66 (171)
263 1x9d_A Endoplasmic reticulum m 96.0 0.26 9E-06 57.0 19.7 288 370-733 163-475 (538)
264 2yan_A Glutaredoxin-3; oxidore 96.0 0.027 9.1E-07 50.5 9.3 74 128-219 7-85 (105)
265 2i3y_A Epididymal secretory gl 96.0 0.025 8.6E-07 57.8 10.2 21 137-157 55-75 (215)
266 2ri9_A Mannosyl-oligosaccharid 96.0 0.72 2.5E-05 52.7 23.0 120 579-706 313-448 (475)
267 1r7h_A NRDH-redoxin; thioredox 96.0 0.011 3.6E-07 48.9 5.9 60 142-218 3-62 (75)
268 1nxc_A Mannosyl-oligosaccharid 96.0 0.2 6.8E-06 57.3 18.2 286 371-736 100-412 (478)
269 3qpm_A Peroxiredoxin; oxidored 95.9 0.012 4.3E-07 61.0 7.5 79 137-220 76-184 (240)
270 2pn8_A Peroxiredoxin-4; thiore 95.9 0.012 4E-07 59.8 6.9 21 137-157 47-68 (211)
271 3keb_A Probable thiol peroxida 95.8 0.042 1.4E-06 56.8 11.0 38 204-244 137-174 (224)
272 1fov_A Glutaredoxin 3, GRX3; a 95.8 0.018 6E-07 48.5 6.7 61 142-218 3-63 (82)
273 2a4v_A Peroxiredoxin DOT5; yea 95.8 0.011 3.7E-07 56.5 5.8 76 137-219 34-132 (159)
274 3uem_A Protein disulfide-isome 95.8 0.011 3.7E-07 64.4 6.5 70 135-215 132-205 (361)
275 2r37_A Glutathione peroxidase 95.7 0.047 1.6E-06 55.4 10.4 20 137-156 37-56 (207)
276 3ctg_A Glutaredoxin-2; reduced 95.6 0.03 1E-06 52.6 8.1 79 128-218 27-106 (129)
277 1hcu_A Alpha-1,2-mannosidase; 95.6 0.27 9.3E-06 56.5 17.6 261 373-706 169-467 (503)
278 3hz8_A Thiol:disulfide interch 95.6 0.046 1.6E-06 54.5 9.7 42 137-181 23-64 (193)
279 1n8j_A AHPC, alkyl hydroperoxi 95.5 0.028 9.7E-07 55.5 8.1 79 137-219 29-133 (186)
280 3e6u_A LANC-like protein 1; al 95.5 0.11 3.7E-06 58.3 13.4 78 548-655 293-370 (411)
281 1nxc_A Mannosyl-oligosaccharid 95.5 0.14 4.8E-06 58.5 14.4 158 544-728 105-274 (478)
282 2rem_A Disulfide oxidoreductas 95.3 0.062 2.1E-06 52.8 9.8 24 137-160 24-47 (193)
283 1ia6_A Cellulase CEL9M; cellul 95.3 0.16 5.4E-06 57.6 14.1 113 299-415 50-194 (441)
284 3tjj_A Peroxiredoxin-4; thiore 95.3 0.027 9.2E-07 59.1 7.2 20 137-156 90-110 (254)
285 2klx_A Glutaredoxin; thioredox 95.2 0.035 1.2E-06 47.8 6.7 59 142-218 8-67 (89)
286 3ic4_A Glutaredoxin (GRX-1); s 95.2 0.042 1.4E-06 47.5 7.0 66 142-218 14-79 (92)
287 1dl2_A Class I alpha-1,2-manno 95.1 0.66 2.3E-05 53.4 18.7 283 371-733 94-434 (511)
288 3zrd_A Thiol peroxidase; oxido 95.1 0.017 5.9E-07 58.0 5.0 93 137-241 77-199 (200)
289 1wik_A Thioredoxin-like protei 95.1 0.048 1.6E-06 49.3 7.5 71 131-218 8-82 (109)
290 3qmx_A Glutaredoxin A, glutare 95.0 0.061 2.1E-06 48.0 7.9 65 139-219 15-80 (99)
291 4eo3_A Bacterioferritin comigr 94.9 0.055 1.9E-06 58.8 8.7 133 137-292 23-174 (322)
292 2znm_A Thiol:disulfide interch 94.9 0.05 1.7E-06 53.7 7.5 23 137-159 21-43 (195)
293 1dl2_A Class I alpha-1,2-manno 94.8 0.23 8E-06 57.2 13.9 187 513-729 71-277 (511)
294 3l4n_A Monothiol glutaredoxin- 94.7 0.093 3.2E-06 49.3 8.4 78 128-217 4-81 (127)
295 1hcu_A Alpha-1,2-mannosidase; 94.7 0.21 7.3E-06 57.4 13.0 174 545-731 101-284 (503)
296 2khp_A Glutaredoxin; thioredox 94.6 0.062 2.1E-06 46.4 6.6 61 142-218 8-68 (92)
297 2ri9_A Mannosyl-oligosaccharid 94.5 1.8 6.2E-05 49.4 20.0 291 370-735 81-413 (475)
298 1x9d_A Endoplasmic reticulum m 94.1 0.066 2.2E-06 61.9 7.3 101 619-725 168-269 (538)
299 1nm3_A Protein HI0572; hybrid, 94.1 0.17 5.8E-06 51.8 9.7 18 137-154 32-50 (241)
300 2v2g_A Peroxiredoxin 6; oxidor 93.8 0.16 5.4E-06 52.6 8.7 37 203-243 126-162 (233)
301 2wfc_A Peroxiredoxin 5, PRDX5; 93.5 0.064 2.2E-06 52.3 4.9 19 137-155 30-49 (167)
302 1un2_A DSBA, thiol-disulfide i 93.4 0.037 1.3E-06 55.8 3.1 47 138-184 113-159 (197)
303 2v8i_A Pectate lyase; periplas 93.3 0.19 6.5E-06 56.3 8.7 92 549-667 378-470 (543)
304 1tp9_A Peroxiredoxin, PRX D (t 92.9 0.097 3.3E-06 50.3 5.1 18 137-154 34-52 (162)
305 1ks8_A Endo-B-1,4-glucanase; c 92.7 5.3 0.00018 44.9 19.8 113 299-415 48-191 (433)
306 1w6k_A Lanosterol synthase; cy 92.2 4.4 0.00015 48.7 19.3 60 359-425 440-502 (732)
307 1prx_A HORF6; peroxiredoxin, h 92.2 0.72 2.4E-05 47.1 10.8 37 203-243 130-166 (224)
308 2wci_A Glutaredoxin-4; redox-a 92.2 0.25 8.7E-06 46.8 6.8 74 128-218 25-102 (135)
309 3uma_A Hypothetical peroxiredo 92.1 0.15 5E-06 50.7 5.4 19 137-155 55-74 (184)
310 3gv1_A Disulfide interchange p 92.0 0.26 8.8E-06 47.3 6.7 27 134-160 10-36 (147)
311 3zyw_A Glutaredoxin-3; metal b 91.8 0.59 2E-05 42.5 8.6 74 128-218 6-83 (111)
312 1q98_A Thiol peroxidase, TPX; 91.6 0.11 3.9E-06 49.8 3.8 20 137-156 42-62 (165)
313 1xcc_A 1-Cys peroxiredoxin; un 91.6 0.26 8.8E-06 50.3 6.6 36 204-243 128-163 (220)
314 1z6m_A Conserved hypothetical 91.6 0.45 1.5E-05 45.9 8.1 25 136-160 25-49 (175)
315 3ipz_A Monothiol glutaredoxin- 91.4 0.66 2.3E-05 41.8 8.5 74 128-218 8-85 (109)
316 3mng_A Peroxiredoxin-5, mitoch 91.0 0.24 8.3E-06 48.6 5.5 19 137-155 42-61 (173)
317 3gx8_A Monothiol glutaredoxin- 90.7 0.6 2.1E-05 43.1 7.6 74 128-218 6-86 (121)
318 1wzz_A Probable endoglucanase; 90.3 3.4 0.00012 44.9 14.4 182 511-725 16-202 (334)
319 2g0d_A Nisin biosynthesis prot 89.9 4.1 0.00014 44.9 15.0 69 549-647 284-352 (409)
320 3sbc_A Peroxiredoxin TSA1; alp 89.9 0.51 1.7E-05 48.4 6.9 102 137-244 51-179 (216)
321 2wem_A Glutaredoxin-related pr 89.9 0.58 2E-05 43.2 6.7 74 128-218 10-88 (118)
322 1aba_A Glutaredoxin; electron 89.7 0.72 2.5E-05 39.4 6.8 64 143-219 3-78 (87)
323 1ut9_A Cellulose 1,4-beta-cell 89.4 0.74 2.5E-05 54.2 8.8 85 547-649 291-381 (609)
324 1nm3_A Protein HI0572; hybrid, 88.0 1.1 3.9E-05 45.5 8.1 76 127-219 155-232 (241)
325 1t1v_A SH3BGRL3, SH3 domain-bi 87.8 0.69 2.4E-05 40.2 5.4 61 144-217 6-71 (93)
326 3l9v_A Putative thiol-disulfid 86.8 0.22 7.5E-06 49.4 1.8 44 138-181 14-59 (189)
327 2pwj_A Mitochondrial peroxired 86.8 0.82 2.8E-05 44.4 5.9 19 137-155 42-61 (171)
328 3tue_A Tryparedoxin peroxidase 86.6 1.1 3.6E-05 46.1 6.8 102 137-244 55-183 (219)
329 3gzk_A Cellulase; fold from GH 86.6 8.6 0.0003 44.5 15.2 160 544-721 152-334 (537)
330 1clc_A Endoglucanase CELD; EC: 85.1 21 0.0007 42.2 17.8 163 542-721 195-378 (639)
331 2ct6_A SH3 domain-binding glut 84.8 1.2 4E-05 40.3 5.5 45 143-191 11-56 (111)
332 1ut9_A Cellulose 1,4-beta-cell 83.4 10 0.00035 44.5 14.1 118 335-467 227-380 (609)
333 2sqc_A Squalene-hopene cyclase 83.1 27 0.00092 41.1 17.7 79 338-425 397-487 (631)
334 3feu_A Putative lipoprotein; a 82.5 0.85 2.9E-05 45.0 3.8 40 138-182 22-61 (185)
335 2xfg_A Endoglucanase 1; hydrol 82.3 26 0.00088 39.8 16.4 119 578-719 111-259 (466)
336 1g87_A Endocellulase 9G; endog 79.0 38 0.0013 39.7 16.8 117 579-719 91-237 (614)
337 2jad_A Yellow fluorescent prot 77.5 1.7 5.9E-05 47.8 4.5 76 128-218 251-330 (362)
338 4f9z_D Endoplasmic reticulum r 76.8 7.9 0.00027 38.9 9.0 77 128-215 120-201 (227)
339 1gxm_A Pectate lyase; mechanis 76.3 1.9 6.4E-05 46.9 4.3 42 382-424 76-117 (332)
340 2wul_A Glutaredoxin related pr 75.9 5.1 0.00017 37.0 6.6 52 128-191 10-68 (118)
341 2yik_A Endoglucanase; hydrolas 74.8 34 0.0012 40.1 14.8 125 578-719 151-305 (611)
342 2okx_A Rhamnosidase B; alpha b 74.1 18 0.00061 44.7 12.8 113 541-667 625-751 (956)
343 2x8g_A Thioredoxin glutathione 72.6 6.1 0.00021 45.8 7.8 76 128-218 8-83 (598)
344 1w6k_A Lanosterol synthase; cy 72.4 24 0.00083 42.3 13.1 156 547-725 390-569 (732)
345 4f82_A Thioredoxin reductase; 71.5 7.1 0.00024 38.5 6.8 18 138-155 47-65 (176)
346 1wzz_A Probable endoglucanase; 71.2 9 0.00031 41.6 8.2 97 547-662 109-209 (334)
347 1r76_A Pectate lyase; A-helica 71.0 3.6 0.00012 45.9 5.0 42 382-424 151-195 (408)
348 3cih_A Putative alpha-rhamnosi 70.6 15 0.00052 44.0 10.8 111 542-666 382-508 (739)
349 2z07_A Putative uncharacterize 69.6 20 0.00067 39.6 10.8 51 542-607 237-287 (420)
350 1v7w_A Chitobiose phosphorylas 69.2 26 0.0009 42.1 12.6 112 547-662 429-552 (807)
351 1v5d_A Chitosanase; chitosan d 67.3 25 0.00085 38.9 10.9 129 586-727 98-232 (386)
352 1r76_A Pectate lyase; A-helica 66.8 1.6E+02 0.0056 32.7 17.9 100 547-665 152-266 (408)
353 2jg0_A Periplasmic trehalase; 66.1 25 0.00087 40.5 11.0 94 543-658 305-402 (535)
354 3c7m_A Thiol:disulfide interch 64.8 6.8 0.00023 37.8 5.1 43 137-181 16-60 (195)
355 3qde_A Cellobiose phosphorylas 64.7 47 0.0016 40.3 13.5 113 535-659 412-559 (811)
356 3tdg_A DSBG, putative uncharac 62.1 5.8 0.0002 42.0 4.2 31 136-172 145-175 (273)
357 3q6o_A Sulfhydryl oxidase 1; p 61.4 15 0.0005 37.1 7.1 68 135-219 154-221 (244)
358 3l9s_A Thiol:disulfide interch 60.7 4.6 0.00016 39.9 3.0 44 138-181 21-66 (191)
359 1ulv_A Glucodextranase; GH fam 60.5 1.2E+02 0.004 37.9 16.1 70 583-655 348-420 (1020)
360 1u6t_A SH3 domain-binding glut 60.2 11 0.00037 35.0 5.2 44 142-189 2-46 (121)
361 1kwf_A Endoglucanase A; hydrol 57.7 1.1E+02 0.0039 33.3 13.8 124 586-725 82-214 (363)
362 3rrs_A Cellobiose phosphorylas 57.1 58 0.002 39.5 12.4 116 535-659 419-566 (822)
363 2axo_A Hypothetical protein AT 56.7 20 0.0007 37.7 7.3 22 137-158 39-62 (270)
364 2z07_A Putative uncharacterize 56.5 36 0.0012 37.4 9.7 46 622-668 238-288 (420)
365 1v5d_A Chitosanase; chitosan d 56.1 16 0.00053 40.5 6.6 94 547-655 138-231 (386)
366 4dvc_A Thiol:disulfide interch 55.5 9.4 0.00032 36.3 4.2 22 137-158 20-41 (184)
367 2h6f_B Protein farnesyltransfe 54.6 20 0.00068 40.4 7.2 118 286-427 76-195 (437)
368 3ren_A Glycosyl hydrolase, fam 54.1 16 0.00055 39.9 6.2 120 586-725 82-202 (350)
369 1wu4_A Xylanase Y; (alpla/alph 49.7 1.4E+02 0.0046 33.1 12.9 130 504-658 18-171 (396)
370 1ulv_A Glucodextranase; GH fam 48.9 1.3E+02 0.0043 37.6 13.7 34 579-612 464-502 (1020)
371 3a0o_A Oligo alginate lyase; a 45.3 3.1E+02 0.011 32.6 16.2 238 382-721 208-453 (776)
372 2okx_A Rhamnosidase B; alpha b 44.4 5.2E+02 0.018 31.6 18.3 135 583-727 595-740 (956)
373 1tf4_A T. fusca endo/EXO-cellu 41.7 3E+02 0.01 32.1 14.7 124 578-720 90-240 (605)
374 1hzf_A Complement factor C4A; 40.9 1.2E+02 0.004 32.9 10.5 115 284-416 92-227 (367)
375 1qqf_A Protein (complement C3D 40.2 2.7E+02 0.0093 28.4 12.9 121 284-417 39-172 (277)
376 1z3e_A Regulatory protein SPX; 39.0 21 0.00073 33.0 3.6 16 142-157 3-18 (132)
377 3qxf_A Endoglucanase; cellulas 39.0 36 0.0012 37.2 6.0 75 586-660 53-135 (355)
378 1sji_A Calsequestrin 2, calseq 37.9 41 0.0014 35.9 6.2 66 141-213 248-316 (350)
379 1h12_A Endo-1,4-beta-xylanase; 37.0 88 0.003 34.7 8.8 123 586-724 97-237 (405)
380 1n4q_B Geranyltransferase type 36.9 93 0.0032 34.2 8.9 21 404-425 192-212 (377)
381 3ren_A Glycosyl hydrolase, fam 36.3 81 0.0028 34.4 8.2 87 547-655 117-203 (350)
382 2p0v_A Hypothetical protein BT 36.2 2E+02 0.0068 32.7 11.5 153 547-722 183-378 (489)
383 3rrs_A Cellobiose phosphorylas 35.9 2.5E+02 0.0085 34.0 13.3 59 583-643 382-445 (822)
384 2p0v_A Hypothetical protein BT 35.8 2.7E+02 0.0092 31.7 12.5 112 618-730 178-319 (489)
385 3l78_A Regulatory protein SPX; 35.7 24 0.00081 32.2 3.3 60 143-216 3-63 (120)
386 1s3c_A Arsenate reductase; ARS 35.1 15 0.00051 34.7 1.9 61 144-218 6-67 (141)
387 2wy7_A Complement C3D fragment 34.7 3.6E+02 0.012 28.0 13.0 120 284-416 55-187 (310)
388 4fnv_A Heparinase III protein, 34.6 6.4E+02 0.022 29.8 17.8 92 545-660 261-360 (702)
389 3fz4_A Putative arsenate reduc 34.0 33 0.0011 31.3 4.0 60 142-215 5-65 (120)
390 4acq_A Alpha-2-macroglobulin; 33.9 2.1E+02 0.007 37.1 12.7 239 335-705 979-1246(1451)
391 3qde_A Cellobiose phosphorylas 33.6 3.1E+02 0.011 33.1 13.6 59 583-643 375-438 (811)
392 2a6h_F RNA polymerase sigma fa 32.7 70 0.0024 35.6 7.2 64 452-537 353-422 (423)
393 1kwf_A Endoglucanase A; hydrol 32.6 69 0.0024 35.0 7.0 93 547-656 123-216 (363)
394 2jg0_A Periplasmic trehalase; 32.6 46 0.0016 38.3 5.8 50 619-668 305-361 (535)
395 2fba_A Glucoamylase Glu1; (alp 32.3 1.1E+02 0.0037 34.9 8.8 72 579-655 244-330 (492)
396 1qqf_A Protein (complement C3D 32.0 49 0.0017 34.2 5.4 79 334-425 33-111 (277)
397 2sqc_A Squalene-hopene cyclase 31.4 85 0.0029 36.8 8.0 95 546-664 314-417 (631)
398 3t72_q RNA polymerase sigma fa 31.1 1.3E+02 0.0043 26.6 7.2 29 499-527 41-69 (99)
399 1h12_A Endo-1,4-beta-xylanase; 31.0 64 0.0022 35.9 6.4 89 547-656 147-240 (405)
400 3gkx_A Putative ARSC family re 30.6 22 0.00076 32.5 2.2 59 143-215 7-66 (120)
401 1v7w_A Chitobiose phosphorylas 30.0 3E+02 0.01 32.8 12.7 50 546-607 505-557 (807)
402 2fba_A Glucoamylase Glu1; (alp 29.1 1.6E+02 0.0054 33.5 9.4 117 534-664 141-272 (492)
403 3f4s_A Alpha-DSBA1, putative u 28.7 31 0.0011 34.9 3.2 39 200-244 168-212 (226)
404 2vn4_A Glucoamylase; hydrolase 28.6 7.4E+02 0.025 28.7 17.5 95 543-653 186-290 (599)
405 3cih_A Putative alpha-rhamnosi 28.4 76 0.0026 37.8 6.9 54 546-611 457-513 (739)
406 2wy7_A Complement C3D fragment 28.1 61 0.0021 34.2 5.4 78 335-425 50-127 (310)
407 4gl3_A Putative glucoamylase; 26.9 1.7E+02 0.0059 32.6 9.0 92 547-653 58-163 (424)
408 3rdw_A Putative arsenate reduc 26.7 37 0.0013 31.0 3.0 61 143-217 8-70 (121)
409 3p2c_A Putative glycosyl hydro 26.0 4.7E+02 0.016 29.5 12.2 112 619-730 162-301 (463)
410 1wu4_A Xylanase Y; (alpla/alph 25.7 1E+02 0.0034 34.1 6.8 98 547-656 131-234 (396)
411 3us3_A Calsequestrin-1; calciu 25.6 1.8E+02 0.0062 31.1 8.8 71 138-215 247-320 (367)
412 1tty_A Sigma-A, RNA polymerase 25.3 1.6E+02 0.0055 24.7 6.7 29 499-527 40-68 (87)
413 3c68_A Uncharacterized protein 25.0 75 0.0026 38.2 6.0 43 625-667 561-607 (761)
414 1xiy_A Peroxiredoxin, pfaop; a 24.7 84 0.0029 30.7 5.4 43 137-180 42-89 (182)
415 1hzf_A Complement factor C4A; 24.3 1.2E+02 0.004 32.9 7.0 77 335-425 87-163 (367)
416 1g9g_A Cellulase CEL48F; proce 24.1 2.3E+02 0.008 32.5 9.2 110 535-660 401-536 (629)
417 3q7a_B Farnesyltransferase bet 24.0 3.7E+02 0.013 30.7 11.2 22 403-425 215-236 (520)
418 2l4c_A Endoplasmic reticulum r 23.7 1.9E+02 0.0063 26.3 7.2 66 128-212 29-94 (124)
419 3qxf_A Endoglucanase; cellulas 23.6 1E+02 0.0034 33.7 6.1 89 547-654 98-190 (355)
420 1l9z_H Sigma factor SIGA; heli 23.3 77 0.0026 35.6 5.3 53 452-526 368-424 (438)
421 3qt9_A Putative uncharacterize 23.2 3.6E+02 0.012 30.1 10.5 112 619-730 134-273 (427)
422 2wam_A RV2714, conserved hypot 22.6 2.6E+02 0.0089 30.4 9.2 161 108-299 140-309 (351)
423 3cu7_A Complement C5; Mg domai 22.4 1.4E+03 0.048 29.7 20.5 76 336-424 1044-1119(1676)
424 3bci_A Disulfide bond protein 22.3 42 0.0014 32.1 2.6 24 136-159 9-32 (186)
425 3e35_A Uncharacterized protein 21.8 2.1E+02 0.0073 30.7 8.2 168 108-303 103-279 (325)
426 3qry_B Putative uncharacterize 21.1 5.4E+02 0.018 28.7 11.4 111 619-730 133-273 (426)
427 2p7v_B Sigma-70, RNA polymeras 21.0 69 0.0023 25.5 3.3 29 499-527 27-55 (68)
428 2o8x_A Probable RNA polymerase 20.9 83 0.0028 24.7 3.7 29 499-527 33-61 (70)
429 3gha_A Disulfide bond formatio 20.8 92 0.0032 30.6 4.8 31 137-169 28-58 (202)
430 1hjs_A Beta-1,4-galactanase; 4 20.6 2.4E+02 0.0081 30.1 8.4 37 127-163 62-100 (332)
431 3ir4_A Glutaredoxin 2; glutath 20.5 2.2E+02 0.0074 27.4 7.5 57 145-218 7-63 (218)
No 1
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=100.00 E-value=3e-45 Score=367.53 Aligned_cols=168 Identities=52% Similarity=1.035 Sum_probs=163.4
Q ss_pred cccccccCCChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc
Q 003115 101 HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (846)
Q Consensus 101 ~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD 180 (846)
++|||++|+||||||||+|||+|++|+++++++|+++||||||+|+|+||+|||+|+.++|++++|++.+|++||.||||
T Consensus 2 ~~n~l~~~~spyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD 81 (173)
T 3ira_A 2 EPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVD 81 (173)
T ss_dssp CCCGGGGCCCHHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEE
T ss_pred CCcccccCCCHHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHH
Q 003115 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (846)
Q Consensus 181 ~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~ 260 (846)
++++|++++.||.++|.++|++|||++||++|+|++++++||+|+++.+++++|.++|+++.+.|+++|++|++.|.+|.
T Consensus 82 ~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~~~~~~~~~~~~~~ 161 (173)
T 3ira_A 82 REERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKIT 161 (173)
T ss_dssp TTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTC
T ss_pred CcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 003115 261 EQLSEALS 268 (846)
Q Consensus 261 ~~l~~~~~ 268 (846)
++|++...
T Consensus 162 ~~~~~~~~ 169 (173)
T 3ira_A 162 STIQEMIK 169 (173)
T ss_dssp SHHHHHHH
T ss_pred HHHHHhhc
Confidence 99987543
No 2
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=100.00 E-value=6.1e-34 Score=317.81 Aligned_cols=249 Identities=12% Similarity=0.033 Sum_probs=199.9
Q ss_pred HHHhCCCcccCCCcE-EEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 347 CMAKGGIHDHVGGGF-HRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL-TKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 347 ~m~~GGi~D~vgGGF-~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~-t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
..-...++|| +||| +||++|.. .+|| ||||||||+++++|++||++ ++++.|+++|+++++||+++|++++||||
T Consensus 22 ~fw~~~~~D~-~GGf~~~~~~d~~-~~~~-eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~ 98 (388)
T 2gz6_A 22 PFWENHSLDS-EGGYFTCLDRQGK-VYDT-DKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDEGNWY 98 (388)
T ss_dssp HHHHHHCBCT-TSSBCCEEBTTSC-EEEC-CEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred HHHHhcCCCC-CCCEEeEECCCCC-cCCc-chhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 3444568999 9995 79999988 8898 99999999999999999999 89999999999999999999999999999
Q ss_pred eeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHH
Q 003115 425 SAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASA 504 (846)
Q Consensus 425 sa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a 504 (846)
+++|+|+.+.
T Consensus 99 ~~~d~dg~~~---------------------------------------------------------------------- 108 (388)
T 2gz6_A 99 FALTRGGEPL---------------------------------------------------------------------- 108 (388)
T ss_dssp SEECTTSCBC----------------------------------------------------------------------
T ss_pred EEEcCCCCcc----------------------------------------------------------------------
Confidence 9999887321
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHH
Q 003115 505 SKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEV 584 (846)
Q Consensus 505 ~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~ 584 (846)
|++..+.+||++|.||+++++++++ ++|++.
T Consensus 109 ---------------------------------~~~~~~~~~af~i~al~~~y~~tg~----------------~~~l~~ 139 (388)
T 2gz6_A 109 ---------------------------------VQPYNIFSDCFAAMAFSQYALASGE----------------EWAKDV 139 (388)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHHHHHHHHCC----------------HHHHHH
T ss_pred ---------------------------------cCCcchHHHHHHHHHHHHHHHHhCC----------------HHHHHH
Confidence 1112334799999999999999998 799999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcc
Q 003115 585 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 664 (846)
Q Consensus 585 A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (846)
|+++++++.++++++ +|.+.+.+.++.+ ..+ ++++++++.++++||++|+|++|++.|+++++.+.++|+|+++|++
T Consensus 140 A~~~~~~i~~~~~d~-~g~~~~~~~~~~~-~~~-~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~ 216 (388)
T 2gz6_A 140 AMQAYNNVLRRKDNP-KGKYTKTYPGTRP-MKA-LAVPMILANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLM 216 (388)
T ss_dssp HHHHHHHHHTC---------------CCC-CEE-THHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEE
T ss_pred HHHHHHHHHHHhcCC-CcccCcccCCCCC-CCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 999999999999875 3544444444432 333 8999999999999999999999999999999999999999988876
Q ss_pred cccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
......+...+ .++..|...|++|+.++++|++++++|++ +.|++.|+++++.+..
T Consensus 217 ~e~~~~~w~~~--~~~~~~~~~pgh~~e~a~lL~~~~~~tgd---~~~~~~A~~~~~~~~~ 272 (388)
T 2gz6_A 217 YENVAPDGSHI--DCFEGRLINPGHGIEAMWFIMDIARRKND---SKTINQAVDVVLNILN 272 (388)
T ss_dssp CSEECTTSCCC--CSTTTTEECHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 32222222222 34456789999999999999999999986 8999999999988743
No 3
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=100.00 E-value=4e-33 Score=313.24 Aligned_cols=335 Identities=10% Similarity=-0.025 Sum_probs=248.2
Q ss_pred HHHHHHHHH-hhccccCCCCCC------CCCCCChhHHHH----HHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 003115 285 LRLCAEQLS-KSYDSRFGGFGS------APKFPRPVEIQM----MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (846)
Q Consensus 285 ~~~~~~~l~-~~~D~~~GGfg~------apKFP~~~~l~~----ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi 353 (846)
++.++..+. ..+|+++|||++ .|| |.+..+.+ +..+..-.... ...+++..+++|.+|++.|.+++
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~-~~~k~l~~nar~l~~~a~a~~~~-~~~~~~~~l~~A~~~~~fl~~~~- 95 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY-DDLKYVWLQGRQVWMYCRLYRKL-ERFHRPELLDAAKAGGEFLLRHA- 95 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS-CCCEEHHHHHHHHHHHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC-CCccchhhhHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhc-
Confidence 356677887 799999999966 788 76643333 33332111000 00125789999999999999977
Q ss_pred cccCCC-cEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCC
Q 003115 354 HDHVGG-GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADS 431 (846)
Q Consensus 354 ~D~vgG-GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs 431 (846)
+|+.|| ||| |++|.+|.+||++|||||||.++++|+++|++|+++.|++.|++++++++++|. +++| +|++.|++.
T Consensus 96 ~d~~gg~g~~-~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G-~f~~~~~~~ 173 (402)
T 1fp3_A 96 RVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSG-LGRPQLPGA 173 (402)
T ss_dssp BSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGG-GCCCCCTTS
T ss_pred cCcCCCCceE-EEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCc-ccCccccCc
Confidence 999988 999 899999999999999999999999999999999999999999999999999998 5555 556666543
Q ss_pred ccccccccccCCceEEecHHHHHHHhhhhHHHHHH---HhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcC
Q 003115 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKE---HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 508 (846)
Q Consensus 432 ~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~---~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g 508 (846)
.+ .++. + ..-...+.+.+ ++.++++ +
T Consensus 174 ~~-------~~~~----~------~~m~~~~~~l~l~~l~~~~~~----------------------------------~ 202 (402)
T 1fp3_A 174 VA-------SESM----A------VPMMLLCLVEQLGEEDEELAG----------------------------------R 202 (402)
T ss_dssp CC-------EEET----H------HHHHHHHHHHHHHTTCHHHHH----------------------------------H
T ss_pred cC-------CCCc----c------hHHHHHHHHHHHHHHHHhcCc----------------------------------H
Confidence 11 1100 0 00001111222 2222211 0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhch----HH--------H---HHHHHHHHHHHhhhhhhhhcccCCC
Q 003115 509 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW----NG--------L---VISSFARASKILKSEAESAMFNFPV 573 (846)
Q Consensus 509 ~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~W----Ng--------l---mI~ALa~A~~v~~d~~~~~~~~~~~ 573 (846)
..+.+.+.++.++++ ++.|..|..+++|.. | |. . ..++|+++++++++
T Consensus 203 -~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~d----w~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~----------- 265 (402)
T 1fp3_A 203 -YAQLGHWCARRILQH-VQRDGQAVLENVSED----GEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------- 265 (402)
T ss_dssp -THHHHHHHHHHHHTT-EETTTTEECSEEETT----SCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred -HHHHHHHHHHHHHHH-hCcCCCeEEEEECCC----CCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCC-----------
Confidence 134566777888888 888999999998853 6 22 1 34589999999998
Q ss_pred CCCChHHHHHHHHHHHHHH-HHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 003115 574 VGSDRKEYMEVAESAASFI-RRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 646 (846)
Q Consensus 574 ~~~~~~~yLe~A~~~a~~l-~~~l~d~~~G~l~~~-~~dg~~~-----~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~ 646 (846)
++|++.|+++++++ .+++||++.|+++++ ..+|++. ....++.++.+|.|++.||++|||++|++.|.
T Consensus 266 -----~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~ 340 (402)
T 1fp3_A 266 -----AKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFY 340 (402)
T ss_dssp -----HHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 79999999999999 999999775667665 6777653 23445566789999999999999999999999
Q ss_pred HHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 647 ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 647 ~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
++++.+.++|+|+++|+||++...++.+....|. .-..+|-+|..++..++
T Consensus 341 ~~~~~~~~~f~D~~~G~w~~~~~~~g~~~~~~k~-~~~k~~yH~~r~~~~~~ 391 (402)
T 1fp3_A 341 QVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKG-GPFKGCFHVPRCLAMCE 391 (402)
T ss_dssp HHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSS-CSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCceEeeECCCcCCCCCCCC-CCCCCCCccHHHHHHHH
Confidence 9999999999999999999988776665544332 24567888887765544
No 4
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.97 E-value=5.8e-31 Score=298.30 Aligned_cols=304 Identities=13% Similarity=0.034 Sum_probs=242.5
Q ss_pred HHHHHHHhhccccCCCCCC-------CCCCCChhHHH-HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 003115 287 LCAEQLSKSYDSRFGGFGS-------APKFPRPVEIQ-MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (846)
Q Consensus 287 ~~~~~l~~~~D~~~GGfg~-------apKFP~~~~l~-~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vg 358 (846)
.++..+...+|++ ||+. -|.++.-..++ .++..+..... .+++..+++|.+|++.|.++ ++|+++
T Consensus 19 ~ll~f~~~~~d~~--GF~~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~----~g~~~~l~~A~~~~~fl~~~-~~D~~~ 91 (421)
T 2zbl_A 19 RIFNFGKNAVVPT--GFGWLGNKGQIKEEMGTHLWITARMLHVYSVAAS----MGRPGAYDLVDHGIKAMNGA-LRDKKY 91 (421)
T ss_dssp HHHHHHGGGEETT--EECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHTTT-TBCTTT
T ss_pred HHHHHHHhCcCCC--CcceECCCCCCCCCchhhHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHh-ccCcCC
Confidence 3344456788988 6842 24444433333 22222221111 12468999999999999997 999999
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceeeeccCCCcccccc
Q 003115 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFSAEDADSAETEGA 437 (846)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~-~Ggfysa~DADs~~~~~~ 437 (846)
|||| ||+|++|.+|| ||||||||.++.+|++ |++|+++.|++.|+++++++.++|+++ +||||++.|+|+.+
T Consensus 92 GG~~-~s~d~dg~~~~-~k~lyd~Af~i~al~~-~~~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~---- 164 (421)
T 2zbl_A 92 GGWY-ACVNDQGVVDA-SKQGYQHFFALLGAAS-AVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQ---- 164 (421)
T ss_dssp SSBC-SEEETTEEEEC-CEEHHHHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCS----
T ss_pred CeEE-EEeCCCCCcCC-chhHHHHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCc----
Confidence 9999 89999999999 9999999999999999 999999999999999999999999998 69999999998731
Q ss_pred ccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHH
Q 003115 438 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 517 (846)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~ 517 (846)
.+ +
T Consensus 165 ---~~-----------------------------------------------~--------------------------- 167 (421)
T 2zbl_A 165 ---TE-----------------------------------------------D--------------------------- 167 (421)
T ss_dssp ---BC-----------------------------------------------S---------------------------
T ss_pred ---cc-----------------------------------------------c---------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHhhhcCCCCCCCCchhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003115 518 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (846)
Q Consensus 518 l~~~r~~L~~~R~~R~~P~~DdKilt~WNglm--I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~ 595 (846)
...||+.| +.+|+++++++++ ++|++.|.++++++.+.
T Consensus 168 ------------------------~~~~n~~m~~~~al~~l~~~tgd----------------~~~~~~A~~~~~~~~~~ 207 (421)
T 2zbl_A 168 ------------------------YRGGNANMHAVEAFLIVYDVTHD----------------KKWLDRALRIASVIIHD 207 (421)
T ss_dssp ------------------------CEEHHHHHHHHHHHHHHHHTTCC----------------THHHHHHHHHHHHHCCC
T ss_pred ------------------------cCCCcHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHHHHH
Confidence 01478866 9999999999998 78999999999999999
Q ss_pred ccccCCCeEEEEecCCCCCCCCC-cch-----------HHHH---HHHHHHHHHHc---CC--H-HHHHHHHHHHHHHHH
Q 003115 596 LYDEQTHRLQHSFRNGPSKAPGF-LDD-----------YAFL---ISGLLDLYEFG---SG--T-KWLVWAIELQNTQDE 654 (846)
Q Consensus 596 l~d~~~G~l~~~~~dg~~~~~~~-leD-----------yA~~---i~aLl~LYe~T---gd--~-~yL~~A~~L~~~~~~ 654 (846)
+.++.+|++.+.++++.....++ ++| |++. +..|+++|+++ |+ + .|++.|+++++.+.+
T Consensus 208 ~~~~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~ 287 (421)
T 2zbl_A 208 VARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIR 287 (421)
T ss_dssp CCGGGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred hccCCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHH
Confidence 98866678877776654433333 454 8887 77899999999 56 5 899999999999999
Q ss_pred HccccC-CCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003115 655 LFLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 655 ~F~D~~-~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
++||++ .||+|.+...++.++.|.|.. ..|+.++.+|++|+++||+ +.|.+.++++++.+...+...
T Consensus 288 ~g~d~~~~GG~~~~~~~~g~~~~~~k~~------w~~aea~~all~l~~~tgd---~~yl~~a~~~~~~~~~~~~d~ 355 (421)
T 2zbl_A 288 DAWAPDGADGFVYSVDWDGKPIVRERVR------WPIVEAMGTAYALYTLTDD---SQYEEWYQKWWDYCIKYLMDY 355 (421)
T ss_dssp HHBSCSSSSSBCSCBCTTSCBSCCCEEH------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTBCT
T ss_pred HhcCCCCCCcEEEeecCCCCccCCCccc------HHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCC
Confidence 999988 577777666566666665554 5599999999999999996 889999999999998877654
No 5
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.94 E-value=5.5e-26 Score=256.05 Aligned_cols=337 Identities=14% Similarity=0.085 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC
Q 003115 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP 419 (846)
Q Consensus 340 ~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~ 419 (846)
.+...|.=-... ..| .+||||.+-.+....+||+||||++||++|++|+.||++++++.|+++|+++++||.++|+++
T Consensus 14 ~~~~~l~fw~~~-~~D-~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~ 91 (402)
T 3gt5_A 14 HISDTMAFYHPR-CID-SAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP 91 (402)
T ss_dssp HHHHHHHHHTTT-TBC-TTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHhc-CCC-CCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC
Confidence 334445432233 357 589999654444445799999999999999999999999999999999999999999999999
Q ss_pred C-CceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh--HHHH-------HHHhcccC-CCCcCCCCCCCCC-CC
Q 003115 420 G-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILF-------KEHYYLKP-TGNCDLSRMSDPH-NE 487 (846)
Q Consensus 420 ~-Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~--~~~~-------~~~f~i~~-~Gn~e~~~~~d~~-g~ 487 (846)
+ ||||+++ .|+.+.+..+..+.-+|+++...|++ +.++. .+.+ .+.|--.. +|.++.. ..++. ..
T Consensus 92 ~~Gg~~~~~-~dG~~~~~~~~lyd~Af~i~al~~~~-~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~-~~~~~~~~ 168 (402)
T 3gt5_A 92 ATGGYAWTL-CDDRVEDDTNHCYGLAFVMLAYSCGL-KVGIKQAREWMDETWCLLERHFWDAEYGLYKDEA-DAQWNFTR 168 (402)
T ss_dssp TTSCBCSEE-ETTEEEECCEEHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEE-CTTCCBCS
T ss_pred CCCcEEEEe-eCCCCCcCCcchHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhh-CCCCCCCC
Confidence 8 9999999 88876666667778899999999954 56632 2333 33332122 2222111 11111 00
Q ss_pred CCC-cceeeccCCchHHHHHcCCC--HHHHHHHHHHHHHHHHhhhcCCCCCCCCch--hh------------------hc
Q 003115 488 FKG-KNVLIELNDSSASASKLGMP--LEKYLNILGECRRKLFDVRSKRPRPHLDDK--VI------------------VS 544 (846)
Q Consensus 488 feg-~nvL~~~~~~~~~a~~~g~~--~~~l~~~l~~~r~~L~~~R~~R~~P~~DdK--il------------------t~ 544 (846)
..+ +.+.|+.+..-.+.+..|-+ .+.+.++++.+.+++.+....+..-++|.. .+ -+
T Consensus 169 ~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pG 248 (402)
T 3gt5_A 169 YRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPG 248 (402)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCCC
Confidence 111 11233333222233333321 144555666666777766555544444321 11 12
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcchH
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDY 622 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~-~~~~~leDy 622 (846)
-+.-..+.|.++++++++ ++|++.|++++++..++.||+++|+++... .+|.+ ...+.++++
T Consensus 249 H~iE~awlLl~~~~~~~~----------------~~~~~~A~~l~~~~~~~gwd~~~Gg~~~~~d~~g~~~~~~k~~W~q 312 (402)
T 3gt5_A 249 HQTEWAKLLLILDRYIEV----------------EWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWVQ 312 (402)
T ss_dssp HHHHHHHHHHHHHHHCCC----------------TTHHHHHHHHHHHHHHHHBCTTTCSBCSEECTTSCEEECCEEHHHH
T ss_pred hHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCCeeeCCcceeHH
Confidence 233356679999999987 689999999999999999998878877653 45554 456889999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
+.+|.|++.||++|||++|+++|.++++.+.++|.|++.|+||..-..++.+....|. --+..|-++..|+..++
T Consensus 313 aEal~a~l~ly~~tgd~~yl~~a~~~~~~~~~~~~D~~~G~W~~~l~~dg~~~~~~k~-~~~K~~YH~~~a~~e~~ 387 (402)
T 3gt5_A 313 AESLAAAALLATRSGDERYWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKS-PAGKTDYHTMGACHEVL 387 (402)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTCSBCSEECTTSCBCCSCCB-CTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEECCCCCCCCCCCC-CCCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876666555433322 12356777777766655
No 6
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=99.92 E-value=5e-24 Score=239.29 Aligned_cols=305 Identities=13% Similarity=0.009 Sum_probs=217.7
Q ss_pred HHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhcc
Q 003115 341 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMI 417 (846)
Q Consensus 341 ~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~~~~y~~~A~~t~~fl~r~m~ 417 (846)
....|.-. .++++|+++|||++|..+...++| +||||++||++|++|+.||+++ +++.|+++|+++++||.+.|+
T Consensus 19 ~~~~l~~w-~~~~~D~~~GGf~~~~~~dg~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~ 96 (402)
T 1fp3_A 19 LDRVMAFW-LEHSHDREHGGFFTCLGRDGRVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHAR 96 (402)
T ss_dssp HHHHHHHH-HHHSBCTTTSSBCCCBCTTSCBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHh-hccCCCCCCCCEeeEECCCCCCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcc
Confidence 44455544 346999999999764444444666 7999999999999999999997 999999999999999999999
Q ss_pred CCC-C-ceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh--HHHHHHHhc-------ccCCCCcCCCCCCCCCC
Q 003115 418 GPG-G-EIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYY-------LKPTGNCDLSRMSDPHN 486 (846)
Q Consensus 418 ~~~-G-gfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~--~~~~~~~f~-------i~~~Gn~e~~~~~d~~g 486 (846)
+++ | |||+++|+|+.+.+..+..+.++|++|...|+.+++++. .+.+.+.+. -.++|.+.
T Consensus 97 d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~--------- 167 (402)
T 1fp3_A 97 VAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGR--------- 167 (402)
T ss_dssp SSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCC---------
T ss_pred CcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccC---------
Confidence 987 4 899999999987776777888999999999999999843 233333332 12334321
Q ss_pred CCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH--HHHHHH---HHHHhh
Q 003115 487 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFAR---ASKILK 561 (846)
Q Consensus 487 ~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglm--I~ALa~---A~~v~~ 561 (846)
.. . + |...+.++|+.| +.++.. ++.+++
T Consensus 168 ---~~-------~-----------------------------------~--~~~~~~~~~~~m~~~~~~l~l~~l~~~~~ 200 (402)
T 1fp3_A 168 ---PQ-------L-----------------------------------P--GAVASESMAVPMMLLCLVEQLGEEDEELA 200 (402)
T ss_dssp ---CC-------C-----------------------------------T--TSCCEEETHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---cc-------c-----------------------------------c--CccCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0 001223446644 456666 556664
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC--CCcchHHHHHH---HHHHHHHH
Q 003115 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP--GFLDDYAFLIS---GLLDLYEF 635 (846)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~--~~leDyA~~i~---aLl~LYe~ 635 (846)
+ .|++.|.++++.+.++ .++++|++...+ .++++... +..-.+++.|+ .|++++++
T Consensus 201 ~-----------------~~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~ 262 (402)
T 1fp3_A 201 G-----------------RYAQLGHWCARRILQH-VQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSR 262 (402)
T ss_dssp H-----------------HTHHHHHHHHHHHHTT-EETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHHH
T ss_pred c-----------------HHHHHHHHHHHHHHHH-hCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3 4899999999999988 888777765554 33332111 12234555444 79999999
Q ss_pred cCCHHHHHHHHHHHHHH-HHHccccCCCcccccCCCCCcccccccCCCC-CCCCChHHHHHHHHHHHHHHhCCCCchHHH
Q 003115 636 GSGTKWLVWAIELQNTQ-DELFLDREGGGYFNTTGEDPSVLLRVKEDHD-GAEPSGNSVSVINLVRLASIVAGSKSDYYR 713 (846)
Q Consensus 636 Tgd~~yL~~A~~L~~~~-~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D-~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~ 713 (846)
++++.|++.|+++++.+ .++.||++.|+++.+...++.++. ...| ...-.+++.++.+++.|+++|++ +.|.
T Consensus 263 ~~~~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~---~l~d~~~~~W~qaea~~a~l~ly~~tgd---~~yl 336 (402)
T 1fp3_A 263 SGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPT---QLEWAMKLWWPHSEAMIAFLMGYSESGD---PALL 336 (402)
T ss_dssp TTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCS---STTTTCEEHHHHHHHHHHHHHHHHHHCC---HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccc---cCcCCCcCcHHHHHHHHHHHHHHHHhCC---HHHH
Confidence 99999999999999999 999999875665544222222211 1112 22236788899999999999996 8899
Q ss_pred HHHHHHHHHHHHHH
Q 003115 714 QNAEHSLAVFETRL 727 (846)
Q Consensus 714 ~~A~~~l~~~~~~i 727 (846)
+.|+++.+.+...+
T Consensus 337 ~~a~~~~~~~~~~f 350 (402)
T 1fp3_A 337 RLFYQVAEYTFRQF 350 (402)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999888876655
No 7
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.89 E-value=5.2e-23 Score=202.28 Aligned_cols=124 Identities=18% Similarity=0.280 Sum_probs=100.5
Q ss_pred ccccccccC-CChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEE
Q 003115 100 KHTNRLAAE-HSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK 178 (846)
Q Consensus 100 ~~~NrL~~e-~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vk 178 (846)
..+|||+.. ++||.++|. ..+++|+++||++||||||+|+++||+||++|+++||+||+|+++||++||.|+
T Consensus 10 ~~~~~l~~lf~~p~~~~~~-------~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~ 82 (153)
T 2dlx_A 10 KKLTTLADLFRPPIDLMHK-------GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQ 82 (153)
T ss_dssp CCCCCCCCTTSCCTTTSCC-------SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred chhhHHHHhhCCchhhhcc-------cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEE
Confidence 467999999 999988754 345999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC-CceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 179 VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 179 vD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd-g~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
+|+++ ++ ...+++. .+..|+|+++|+||+ |+++...++.+++ .|++.|+++.
T Consensus 83 ~d~~~-~~-~~~l~~~----y~v~~~P~~~fld~~~G~~l~~~~g~~~~------~fl~~L~~~l 135 (153)
T 2dlx_A 83 VYHDS-EE-GQRYIQF----YKLGDFPYVSILDPRTGQKLVEWHQLDVS------SFLDQVTGFL 135 (153)
T ss_dssp EESSS-HH-HHHHHHH----HTCCSSSEEEEECTTTCCCCEEESSCCHH------HHHHHHHHHH
T ss_pred EecCC-Hh-HHHHHHH----cCCCCCCEEEEEeCCCCcEeeecCCCCHH------HHHHHHHHHH
Confidence 99964 33 2333322 278899999999998 8777653344433 5766665554
No 8
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.89 E-value=4.5e-22 Score=225.42 Aligned_cols=246 Identities=10% Similarity=0.050 Sum_probs=189.8
Q ss_pred CcccCCCcEEEEEcCCCCC-CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCC
Q 003115 353 IHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 430 (846)
Q Consensus 353 i~D~vgGGF~RYsvD~~W~-vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~-Ggfysa~DAD 430 (846)
..|+. ||+ ++|.+|. +|++|||+++||+||++|++||+ ++++.|+++|+++++||.+.|++++ ||||+++|+|
T Consensus 27 ~~d~~--GF~--~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d 101 (421)
T 2zbl_A 27 AVVPT--GFG--WLGNKGQIKEEMGTHLWITARMLHVYSVAAS-MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ 101 (421)
T ss_dssp GEETT--EEC--CBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT
T ss_pred CcCCC--Ccc--eECCCCCCCCCchhhHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC
Confidence 57987 785 9999996 79999999999999999999998 9999999999999999999999987 9999999987
Q ss_pred CccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCC
Q 003115 431 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 510 (846)
Q Consensus 431 s~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~ 510 (846)
+.+.+
T Consensus 102 g~~~~--------------------------------------------------------------------------- 106 (421)
T 2zbl_A 102 GVVDA--------------------------------------------------------------------------- 106 (421)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred CCcCC---------------------------------------------------------------------------
Confidence 63210
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 003115 511 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (846)
Q Consensus 511 ~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~ 590 (846)
+| ...-|+++|.|++. ++++++ ++|++.|+++.+
T Consensus 107 ----------------------------~k-~lyd~Af~i~al~~-~~~tg~----------------~~~l~~a~~~~~ 140 (421)
T 2zbl_A 107 ----------------------------SK-QGYQHFFALLGAAS-AVTTGH----------------PEARKLLDYTIE 140 (421)
T ss_dssp ----------------------------CE-EHHHHHHHHHHHHH-HHTTTC----------------TTHHHHHHHHHH
T ss_pred ----------------------------ch-hHHHHHHHHHHHHH-HHHhCC----------------ccHHHHHHHHHH
Confidence 01 01135999999999 899988 689999999999
Q ss_pred HHHHhccccCCCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc---cc
Q 003115 591 FIRRHLYDEQTHRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YF 665 (846)
Q Consensus 591 ~l~~~l~d~~~G~l~~~~~-dg~~-~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf 665 (846)
++.++++|++.|+++.+.. +++. .....++.+++++.+++++|++|++++|+++|.++++.+.+++.+..+|. +|
T Consensus 141 ~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~~~~~~~~~l~~~f 220 (421)
T 2zbl_A 141 VIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHF 220 (421)
T ss_dssp HHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEE
T ss_pred HHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhccCCCCchhhhc
Confidence 9999999987788877643 3322 12345667788999999999999999999999999999999998865554 44
Q ss_pred ccCCCCCcccccc-cC-CCCC-----CCCChHHHHHHHHHHHHHHhCCCCc--h-HHHHHHHHHHHHHHHHH
Q 003115 666 NTTGEDPSVLLRV-KE-DHDG-----AEPSGNSVSVINLVRLASIVAGSKS--D-YYRQNAEHSLAVFETRL 727 (846)
Q Consensus 666 ~t~~~~~~l~~R~-k~-~~D~-----a~PS~Nsv~a~~L~rL~~lt~~~~~--~-~y~~~A~~~l~~~~~~i 727 (846)
... ...+... .+ ..+- ..|.+.-.+++.|++++.++++..+ + .|.+.|.++.+......
T Consensus 221 ~~~---~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g 289 (421)
T 2zbl_A 221 DSQ---WNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDA 289 (421)
T ss_dssp CTT---SCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHH
T ss_pred CCc---cccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHh
Confidence 322 1111110 11 0111 2477777789999999999942112 3 79999998887764433
No 9
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=99.86 E-value=1.3e-20 Score=209.99 Aligned_cols=293 Identities=11% Similarity=0.006 Sum_probs=195.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~ 413 (846)
++..+++|.++++-+.+- ++|. .||||. ++|.+..+..-.|.+|+||.++.+++++|++|+++.|++.|++++++++
T Consensus 72 ~~~~~~~A~~~~~~l~~~-~~~~-~Gg~~~-~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~ 148 (388)
T 2gz6_A 72 RENWLKIARNGAKFLAQH-GRDD-EGNWYF-ALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVL 148 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH-SBCT-TSCBCS-EECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-cCCC-CCCEEE-EEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578999999999988773 4565 589995 8888877666689999999999999999999999999999999999999
Q ss_pred HhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcce
Q 003115 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 493 (846)
Q Consensus 414 r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nv 493 (846)
+.+.+++ |++.....+..+ ..| .+- ..+ -...+.+.|.++.+.
T Consensus 149 ~~~~d~~-g~~~~~~~~~~~-------~~~------~~~-~~~---~~~all~l~~~t~d~------------------- 191 (388)
T 2gz6_A 149 RRKDNPK-GKYTKTYPGTRP-------MKA------LAV-PMI---LANLTLEMEWLLPQE------------------- 191 (388)
T ss_dssp TC---------------CCC-------CEE------THH-HHH---HHHHHHHTGGGSCHH-------------------
T ss_pred HHhcCCC-cccCcccCCCCC-------CCC------CCH-HHH---HHHHHHHHHHHcCCH-------------------
Confidence 9998764 555432222110 000 000 000 011112222222100
Q ss_pred eeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCC-----------chhhhchHHHHHHHHHHHHHHhhh
Q 003115 494 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLD-----------DKVIVSWNGLVISSFARASKILKS 562 (846)
Q Consensus 494 L~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~D-----------dKilt~WNglmI~ALa~A~~v~~d 562 (846)
.+ .+...+.++.+.+++.+....+..+++| +-+.-+-|.-+++.|.++++++||
T Consensus 192 --------~~-------~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd 256 (388)
T 2gz6_A 192 --------TL-------ENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKND 256 (388)
T ss_dssp --------HH-------HHHHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HH-------HHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCC
Confidence 00 1222333444444444333333333222 223334456678899999999998
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHc
Q 003115 563 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFG 636 (846)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~-----~~~~leDyA~~i~aLl~LYe~T 636 (846)
++|++.|+++++++.++.||++.|++++. ..+|.+. ..+.++.+|.++.|++.+|++|
T Consensus 257 ----------------~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~t 320 (388)
T 2gz6_A 257 ----------------SKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLT 320 (388)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999886777665 3456653 3466777999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 637 SGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 637 gd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
||++|++.|.++++.+.++|.|+++|+||+.-..++.+....|. .-...|-++..++..++
T Consensus 321 gd~~yl~~a~~~~~~~~~~~~D~~~G~w~~~l~~~g~~~~~~~~-~~~K~~YH~~~~~~~~~ 381 (388)
T 2gz6_A 321 GRDACWAWYQKMHDYSWQHFADPEYGEWFGYLNRRGEVLLNLKG-GKWKGCFHVPRAMYLCW 381 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBCTTTSSBCCEECTTSCBSSCBSC-CSSCSSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCCCceEEeeCCCcCCCCcCCC-CCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999877666555442222 22346888877665444
No 10
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.85 E-value=2.1e-20 Score=209.42 Aligned_cols=244 Identities=13% Similarity=0.065 Sum_probs=186.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHH-HHHHHHHccCChHHHHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLAN-VYLDAFSLTKDVFYSYICRDILDYL 412 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~-~ya~Ay~~t~~~~y~~~A~~t~~fl 412 (846)
++..++.+..-.+.+..+- -.++. .+--|-+.+.. +|..+|++|+|+.|++++.+++++|
T Consensus 86 d~~~~~~a~~~~~~l~~~~-~~~~~------------------~~~HD~GF~~~~s~~~~y~ltg~~~~~~~~~~aA~~L 146 (397)
T 2zzr_A 86 DKKLKNIAHKNVLSFLNRI-NNRIA------------------LDHHDLGFLYTPSCTAEYRINGDVKALEATIKAADKL 146 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HTTCS------------------CCSSTHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh-hhccc------------------CCCCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677787777667765521 12110 01012444444 4899999999999999999999999
Q ss_pred HHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcc
Q 003115 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 492 (846)
Q Consensus 413 ~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~n 492 (846)
...+ +|.|||..+-+.... ++ ++
T Consensus 147 ~~r~-~~~~g~iqsw~~~~~-----------------------------------------~~-------------~~-- 169 (397)
T 2zzr_A 147 MERY-QEKGGFIQAWGELGY-----------------------------------------KE-------------HY-- 169 (397)
T ss_dssp HTTE-ETTTTEECCSSSTTC-----------------------------------------GG-------------GC--
T ss_pred HHHh-CcCCCEEEecccCCC-----------------------------------------CC-------------CC--
Confidence 9988 778888765442110 00 00
Q ss_pred eeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 003115 493 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 572 (846)
Q Consensus 493 vL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~ 572 (846)
+.++ .|.|.|.+|+.|++++||
T Consensus 170 ------------------------------------------~~iI------D~~mni~~L~~A~~~~gd---------- 191 (397)
T 2zzr_A 170 ------------------------------------------RLII------DCLLNIQLLFFAYEQTGD---------- 191 (397)
T ss_dssp ------------------------------------------EEET------THHHHTHHHHHHHHHHCC----------
T ss_pred ------------------------------------------ceee------chHhHHHHHHHHHHHhCC----------
Confidence 1112 247789999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCCC----CCCCcchH------HHHHHHHHHHHHHcCC
Q 003115 573 VVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSK----APGFLDDY------AFLISGLLDLYEFGSG 638 (846)
Q Consensus 573 ~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~----dg~~~----~~~~leDy------A~~i~aLl~LYe~Tgd 638 (846)
++|++.|++.++++.++++++ +|+++|+++ +|++. ..|+++|| |++|.|++++|++|+|
T Consensus 192 ------~~y~~~A~~ha~~~l~~~~r~-dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d 264 (397)
T 2zzr_A 192 ------EKYRQVAVNHFYASANNVVRD-DSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKD 264 (397)
T ss_dssp ------HHHHHHHHHHHHHHHHHTBCT-TSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 899999999999999999875 578999977 78763 68999996 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchH--HHHHH
Q 003115 639 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY--YRQNA 716 (846)
Q Consensus 639 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~--y~~~A 716 (846)
++||+.|+++++.++++|- .+++.||++..++ ++.++++ ||+||++|.+|++|++++++....+ |++.|
T Consensus 265 ~~yL~~A~~la~~~l~~~~-~d~~pywdt~~~~--~~~~~~D------~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A 335 (397)
T 2zzr_A 265 YQQIILFKGMTNYFLNRLP-EDKVSYWDLIFTD--GSGQPRD------TSATATAVCGIHEMLKYLPEVDPDKETYKYAM 335 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCC-TTSCCBSBTTCCT--TSCCCBC------HHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH-HhCCccccCCCCC--CCCCcCC------CCHHHHHHHHHHHHHHhcCccchhhHHHHHHH
Confidence 9999999999999999993 2344488886543 3444444 9999999999999999997522356 99999
Q ss_pred HHHHHHHHHHH
Q 003115 717 EHSLAVFETRL 727 (846)
Q Consensus 717 ~~~l~~~~~~i 727 (846)
+++|+.+++..
T Consensus 336 ~~~l~~l~~~y 346 (397)
T 2zzr_A 336 HTMLRSLIEQY 346 (397)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 11
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.80 E-value=6e-19 Score=196.74 Aligned_cols=245 Identities=18% Similarity=0.157 Sum_probs=184.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHH-HHHHHHHHccCChHHHHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLA-NVYLDAFSLTKDVFYSYICRDILDYL 412 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll-~~ya~Ay~~t~~~~y~~~A~~t~~fl 412 (846)
++..++.++.-.+.+..+ +-.+++-.- .|-+.+. ..|..+|++|+|+.|++++.++.++|
T Consensus 60 d~~~~~~a~~~~~~l~~~-~~~~~~~~~------------------HD~Gf~~~~s~~~~y~ltg~~~~~~~~~~aA~~L 120 (377)
T 2ahf_A 60 DEQYREGAVRTVASFRER-LDRFENLDH------------------HNIGFLYSLSAKAQWIVEKDESARKLALDAADVL 120 (377)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTTTTTCCB------------------STHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-hhcccCCCC------------------CCchHhhHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467788777776666543 222222100 1255555 47899999999999999999999999
Q ss_pred HHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcc
Q 003115 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 492 (846)
Q Consensus 413 ~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~n 492 (846)
...+. |.+|+..+-+.-. ..+| .|
T Consensus 121 ~~r~~-~~~g~i~sw~~~~----------------------------------------~~~~-------------~~-- 144 (377)
T 2ahf_A 121 MRRWR-ADAGIIQAWGPKG----------------------------------------DPEN-------------GG-- 144 (377)
T ss_dssp HTTEE-TTTTEECCBSSTT----------------------------------------CTTT-------------TT--
T ss_pred HHhCC-CCCCeEEeccCCC----------------------------------------CCCC-------------Cc--
Confidence 99875 6766655322100 0000 01
Q ss_pred eeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 003115 493 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 572 (846)
Q Consensus 493 vL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~ 572 (846)
+.++| |.|||.+|++|++++||
T Consensus 145 ------------------------------------------~~iID------~mmni~~L~~A~~~~gd---------- 166 (377)
T 2ahf_A 145 ------------------------------------------RIIID------CLLNLPLLLWAGEQTGD---------- 166 (377)
T ss_dssp ------------------------------------------EEEGG------GGGGHHHHHHHHHHHCC----------
T ss_pred ------------------------------------------eEEec------hHHHHHHHHHHHHHhCC----------
Confidence 11222 36889999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCC----CCCCCcchH------HHHHHHHHHHHHHcCC
Q 003115 573 VVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPS----KAPGFLDDY------AFLISGLLDLYEFGSG 638 (846)
Q Consensus 573 ~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~----dg~~----~~~~~leDy------A~~i~aLl~LYe~Tgd 638 (846)
++|++.|++.++++.++++++ +|+++|+++ +|++ ...|+++|| |++|.|++++|++|+|
T Consensus 167 ------~~y~~~A~~~a~~~l~~~~r~-dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d 239 (377)
T 2ahf_A 167 ------PEYRRVAEAHALKSRRFLVRG-DDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGN 239 (377)
T ss_dssp ------THHHHHHHHHHHHHHHHTBBT-TSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCC
Confidence 799999999999999999875 578999987 8877 678999996 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCC--CchHHHHHH
Q 003115 639 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS--KSDYYRQNA 716 (846)
Q Consensus 639 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~--~~~~y~~~A 716 (846)
++||+.|+++++.++++| ..+++.||++.. +.++.+.+ .||+||++|.+|++|+++++.. ++++|++.|
T Consensus 240 ~~yL~~A~~la~~~l~~~-~~d~~pywd~~~--~~~~~~~~------d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A 310 (377)
T 2ahf_A 240 ADLLETAKRMARHFLARV-PEDGVVYWDFEV--PQEPSSYR------DSSASAITACGLLEIASQLDESDPERQRFIDAA 310 (377)
T ss_dssp HHHHHHHHHHHHHHHTTC-CTTSSCBSBTTS--CCCTTSCB------CHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh-HHhCCcccccCC--CccCCCcc------CCCHHHHHHHHHHHHHHhcCccccchHHHHHHH
Confidence 999999999999999999 333344888754 33444444 4899999999999999999611 137799999
Q ss_pred HHHHHHHHHHH
Q 003115 717 EHSLAVFETRL 727 (846)
Q Consensus 717 ~~~l~~~~~~i 727 (846)
+++++.+.+..
T Consensus 311 ~~~l~~l~~~y 321 (377)
T 2ahf_A 311 KTTVTALRDGY 321 (377)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999986643
No 12
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.80 E-value=5e-19 Score=199.31 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHH
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYA 623 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~-~~~~~leDyA 623 (846)
-||+||+++++||+++++ +.|++.|+++++||.++++|+++|+++++.++|++ ...+.++|||
T Consensus 53 ~n~r~i~~~a~a~~~~g~----------------~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~A 116 (402)
T 3gt5_A 53 SSTRFVFNYAMAYLQFGT----------------AEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLA 116 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC----------------hHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHH
Confidence 489999999999999987 89999999999999999999876889999989987 4679999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChH--HHHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLA 701 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~N--sv~a~~L~rL~ 701 (846)
|+|.|+++ |.+||+++|++.|+++++.++++|+|+++|+||++...+.. + + ..|+.| ++++.++++|+
T Consensus 117 f~i~al~~-~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~-~-~-------~~~~~n~~m~l~eall~L~ 186 (402)
T 3gt5_A 117 FVMLAYSC-GLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWN-F-T-------RYRGQNANMHMCEAMLAAY 186 (402)
T ss_dssp HHHHHHHH-HHHTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCC-B-C-------SCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCC-C-C-------CCCCCCHHHHHHHHHHHHH
Confidence 99999999 77899999999999999999999999998998865433322 1 1 234555 46888999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003115 702 SIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (846)
Q Consensus 702 ~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 729 (846)
++|++ +.|+++|+++++.+...+..
T Consensus 187 ~~tgd---~~~~~~a~~l~~~~~~~f~~ 211 (402)
T 3gt5_A 187 EASGE---QRYLERALVLADRITRRQAA 211 (402)
T ss_dssp HHHCC---HHHHHHHHHHHHHHHTHHHH
T ss_pred HhhCC---HHHHHHHHHHHHHHHHHhhC
Confidence 99996 89999999999999877643
No 13
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.79 E-value=2.1e-19 Score=176.21 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=99.6
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003115 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (846)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~ 197 (846)
...|+|..++++|+++|++++|||||+|+++||++|++|+..+++++++.++++.+||.|+||.+ .+++...|
T Consensus 24 ~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~~~~~~~------ 96 (151)
T 3ph9_A 24 GDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLSP------ 96 (151)
T ss_dssp CTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CSCGGGCT------
T ss_pred cCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-chhhHhhc------
Confidence 45799999999999999999999999999999999999999999999999999889999999954 44443323
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccC-CCCCCCcccHHHHHHHHHHHHHH
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFP-PEDKYGRPGFKTILRKVKDAWDK 247 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~~-tY~p-~~~~~~~~~f~~~L~~i~~~~~~ 247 (846)
++.|+|+++|++|+|+++... |+.+ +.-.+...+|.++|+.+.++++.
T Consensus 97 --~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~ 146 (151)
T 3ph9_A 97 --DGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRL 146 (151)
T ss_dssp --TCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSC
T ss_pred --CCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHH
Confidence 678999999999999998753 3322 11123445799999999988764
No 14
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.73 E-value=4.3e-16 Score=172.44 Aligned_cols=242 Identities=15% Similarity=0.085 Sum_probs=180.4
Q ss_pred HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 003115 314 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF 393 (846)
Q Consensus 314 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay 393 (846)
.+..|..++..++ ++..++++.++++.+.. ..+|.+ ++ ..+-|+|.++.++.+||
T Consensus 51 ~~~~l~d~~~~tg-------d~~y~~~a~~~~~~~~~-----~~~~~~----------~~---~~~DD~a~~~la~~~ay 105 (349)
T 3k7x_A 51 LVEVRLDAYLRTK-------KQADLEVAEKTYLHNKN-----RNGGTL----------IH---DFYDDMLWNALAAYRLY 105 (349)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-----HTTSSS----------CC---SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHh-----cCCCCC----------Cc---cCccHHHHHHHHHHHHH
Confidence 4566667776654 47889999998887754 112222 11 22557999999999999
Q ss_pred HccCChHHHHHHHHHHHHHHHhccCC--CCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhccc
Q 003115 394 SLTKDVFYSYICRDILDYLRRDMIGP--GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLK 471 (846)
Q Consensus 394 ~~t~~~~y~~~A~~t~~fl~r~m~~~--~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~ 471 (846)
++++++.|++.|++..+++....+++ +|||+|..+.+.
T Consensus 106 e~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~~~---------------------------------------- 145 (349)
T 3k7x_A 106 KATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQMY---------------------------------------- 145 (349)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTEEE----------------------------------------
T ss_pred HHHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCCCcc----------------------------------------
Confidence 99999999999999999994334454 488988532100
Q ss_pred CCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHH
Q 003115 472 PTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVIS 551 (846)
Q Consensus 472 ~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ 551 (846)
.+| +| -|++++.
T Consensus 146 ------------------~kn------------------------------------------------ai--sN~~~~~ 157 (349)
T 3k7x_A 146 ------------------YKN------------------------------------------------TP--VNAPFII 157 (349)
T ss_dssp ------------------EEE------------------------------------------------HH--HHHHHHH
T ss_pred ------------------ccc------------------------------------------------hh--hHHHHHH
Confidence 011 11 3899999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCC-CCCcchHHHHHH
Q 003115 552 SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKA-PGFLDDYAFLIS 627 (846)
Q Consensus 552 ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~---dg~~~~-~~~leDyA~~i~ 627 (846)
++++++++++| ++|++.|+++++|+.++++|++ |.++.... +|.... ..+.++++++|.
T Consensus 158 ~la~l~~~tgd----------------~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~ 220 (349)
T 3k7x_A 158 LSCWLYNELNE----------------TKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIG 220 (349)
T ss_dssp HHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCC----------------HHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHH
Confidence 99999999998 7999999999999999999976 66654432 222222 478889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003115 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (846)
Q Consensus 628 aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 707 (846)
|++.||++|+|++||+.|++|++.++++|+. +|-.++. ..++..+|.++++++.|..|+++++.
T Consensus 221 g~~~LY~~T~d~~yl~~a~~l~~~~~~~f~~--~gi~~~~-------------~~~~D~~sFkgi~~r~L~~l~~~~p~- 284 (349)
T 3k7x_A 221 ANLELYRITKEAIYLDTANKTAAISLKELTE--DGIFKDE-------------GNGGDEGLFKGIFYRYFTDLIEETAN- 284 (349)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--TTEECCC-------------CSSSGGGGHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHhcc--CCcccCC-------------CCCccHHHHHHHHHHHHHHHHHHCCh-
Confidence 9999999999999999999999999999973 4544321 12466799999999999999999974
Q ss_pred CchHHHHHHHHHHHHH
Q 003115 708 KSDYYRQNAEHSLAVF 723 (846)
Q Consensus 708 ~~~~y~~~A~~~l~~~ 723 (846)
+.|+...+...++.
T Consensus 285 --~~~~~~l~~sa~aa 298 (349)
T 3k7x_A 285 --KTYRDFVLNSCQIL 298 (349)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 45555554444433
No 15
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.71 E-value=3.4e-17 Score=161.58 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=98.9
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccH----------
Q 003115 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV---------- 187 (846)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~---------- 187 (846)
.....|...++++++.|+++||||+|+|+++||++|+.|+.++|+++++.+.++++|+.|+||.++.+++
T Consensus 27 ~~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~ 106 (172)
T 3f9u_A 27 NEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENG 106 (172)
T ss_dssp -CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETT
T ss_pred cccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcc
Confidence 3456677777999999999999999999999999999999999999999999998999999999877644
Q ss_pred --------HHHHHHHHHHhcCCCCCCcEEEECCCCceecc-ccccC-CCCCCCcccHHHHHHHHHHHHHHc
Q 003115 188 --------DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG-GTYFP-PEDKYGRPGFKTILRKVKDAWDKK 248 (846)
Q Consensus 188 --------~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~-~tY~p-~~~~~~~~~f~~~L~~i~~~~~~~ 248 (846)
............++.|+|+++|+|++|+++.. .+|.+ + +.|.+.|+++.+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~------~~l~~~l~~~l~~~~~~ 171 (172)
T 3f9u_A 107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDI------SKYINFLQTGLENYRKE 171 (172)
T ss_dssp EEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCH------HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCH------HHHHHHHHHHHHHhhcc
Confidence 11111111122388899999999999999875 35555 3 36888888887777653
No 16
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.69 E-value=4e-17 Score=159.19 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=102.1
Q ss_pred cccccccccCCChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEE
Q 003115 99 NKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSI 177 (846)
Q Consensus 99 ~~~~NrL~~e~SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~v 177 (846)
+..+||+..+.|++|++.+...++| ....++++.|+.+||||+|.|+ ++||++|+.|....++++++++..+.+|+.|
T Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v 87 (154)
T 2ju5_A 9 SAARRRASGENLQQTRPIAAANLQW-ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV 87 (154)
T ss_dssp --CHHHHCCCCSSCCCSSCCCCCCE-ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEE
T ss_pred HHHHhhhhhhcchhhhhcccCCCCC-CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEE
Confidence 3467999999999999999999999 7779999999999999999998 9999999999999999999999988899999
Q ss_pred EEcCCCCccHHHH----HHHHHHHhcCCCCCCcEEEECCCCceecccccc
Q 003115 178 KVDREERPDVDKV----YMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 223 (846)
Q Consensus 178 kvD~ee~p~~~~~----y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~ 223 (846)
+||.++.+++... -....+ ..++.|+|+++|+|++|+++...+|.
T Consensus 88 ~vd~~~~~~~~~~~~~~~~~l~~-~~~v~~~Pt~~~~d~~G~~~~~~G~~ 136 (154)
T 2ju5_A 88 EVDFPQKNHQPEEQRQKNQELKA-QYKVTGFPELVFIDAEGKQLARMGFE 136 (154)
T ss_dssp EEECCSSCCCCHHHHHHHHHHHH-HTTCCSSSEEEEECTTCCEEEEECCC
T ss_pred EecCccccCCChhhHhhHHHHHH-HcCCCCCCEEEEEcCCCCEEEEecCC
Confidence 9999876622100 011122 23888999999999999998754555
No 17
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.51 E-value=2.7e-14 Score=134.44 Aligned_cols=112 Identities=21% Similarity=0.406 Sum_probs=88.3
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC---CCCccHHHHHHHHHHH
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR---EERPDVDKVYMTYVQA 197 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~---ee~p~~~~~y~~~~~~ 197 (846)
++.....+++++.|++++|||+|.|+++||++|+.|.. .|+++++++.++++++.++||. ++.+++.+.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~------ 84 (133)
T 3fk8_A 12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAY------ 84 (133)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHT------
T ss_pred cChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHh------
Confidence 33334459999999999999999999999999999998 6999999999988999999999 7777766665
Q ss_pred hcCC---CCCCcEEEECCCCceecc--ccccCCCCCCCcccHHHHHHHH
Q 003115 198 LYGG---GGWPLSVFLSPDLKPLMG--GTYFPPEDKYGRPGFKTILRKV 241 (846)
Q Consensus 198 ~~g~---~G~P~~v~l~pdg~~~~~--~tY~p~~~~~~~~~f~~~L~~i 241 (846)
++ .|+|+++|++++|+++.. ++.++.....+...+.++|+++
T Consensus 85 --~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 85 --GDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp --TCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred --CCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 77 899999999999999864 2233332223344556666554
No 18
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=99.46 E-value=3.7e-13 Score=156.63 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH
Q 003115 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA 623 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA 623 (846)
.-|++||.|||.|++++.+. .+..++||+.|+++.+|+.++.. ++ +++|. .+++|||
T Consensus 250 ~~agl~aAALA~Asrvf~d~-----------~~~a~~~L~aA~~a~~fa~~~~~-----~y---~~~g~---~~~~De~- 306 (586)
T 3h7l_A 250 QGGGVAIAALAAASRLGVHG-----------EYDQQKYRNAAENGYWHLKEHNT-----QY---LNDGE---ENIIDEY- 306 (586)
T ss_dssp GTHHHHHHHHHHHTTSSSCS-----------SSCHHHHHHHHHHHHHHHHHHHH-----HH---STTSC---CCHHHHH-
T ss_pred CcHHHHHHHHHHHhcccCCC-----------CcChHHHHHHHHHHHHHHHhcCc-----cc---cCCCC---ccchhHH-
Confidence 34899999999999996441 11137899999999999998742 12 23443 5889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (846)
++++|+++||++|||+.||+.|.++.+.+.++|++.+.|+||++..++ |.|+.+|++ .+++.+.+|++|..+
T Consensus 307 ~~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~-----~~r~~~d~a---~~gl~~iaLl~l~~~ 378 (586)
T 3h7l_A 307 CALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD-----GSRPYFHAA---EAGLPTIALCEYLAI 378 (586)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS-----SSSBCCCTT---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc-----CCccccccc---ccHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988788899887654 688999986 689999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHH
Q 003115 704 VAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~~~ 725 (846)
+++ ..++++++++|.....
T Consensus 379 ~~d---~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 379 EDD---SVQTESVKCIVNRACE 397 (586)
T ss_dssp CCS---TTTTHHHHHHHHHHHH
T ss_pred cCC---hHHHHHHHHHHHHHhh
Confidence 985 4466777777776655
No 19
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.16 E-value=9.6e-15 Score=136.78 Aligned_cols=98 Identities=26% Similarity=0.414 Sum_probs=82.4
Q ss_pred CccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHH
Q 003115 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQA 197 (846)
Q Consensus 120 ~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~p~~~~~y~~~~~~ 197 (846)
.|+|..+ +++++.|+.++|||+|.|+++||++|+.|....+.++++++.++.+++.++||.+ +.+++.+.|
T Consensus 2 ~i~w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~------ 74 (130)
T 2lst_A 2 SLRWYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRY------ 74 (130)
Confidence 4789999 9999999999999999999999999999999999999999999888999999984 455665555
Q ss_pred hcCCCCCCcEEEECCC-Cce--ecc-ccccCCC
Q 003115 198 LYGGGGWPLSVFLSPD-LKP--LMG-GTYFPPE 226 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pd-g~~--~~~-~tY~p~~ 226 (846)
++.|+|+++|++|+ |++ +.. .++.+++
T Consensus 75 --~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~ 105 (130)
T 2lst_A 75 --RVPGTPTFVFLVPKAGAWEEVGRLFGSRPRA 105 (130)
Confidence 77899999999985 887 543 2344443
No 20
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.41 E-value=6.8e-12 Score=138.79 Aligned_cols=152 Identities=16% Similarity=0.018 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCCCCCCCcchHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPSKAPGFLDDYAFL 625 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~-~G~l~~~~~dg~~~~~~~leDyA~~ 625 (846)
+.++.|+.+||+++++ ++||+.|+++++++....|++. +|+++++... ...+..-+++.+
T Consensus 95 a~~~la~~~aye~t~~----------------~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~---~~~knaisN~~~ 155 (349)
T 3k7x_A 95 LWNALAAYRLYKATGK----------------SIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQ---MYYKNTPVNAPF 155 (349)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTE---EEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC----------------chHHHHHHHHHHHHHHhCCCCCCCCceEecCCC---ccccchhhHHHH
Confidence 7888999999999998 8999999999999955556653 6888876321 011222378999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCC--CCCChHHHHHHHHHHHHHH
Q 003115 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVINLVRLASI 703 (846)
Q Consensus 626 i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~--a~PS~Nsv~a~~L~rL~~l 703 (846)
+.+++.||++|||++|++.|+++++.+.++++|++ |.+|+..... .....++ .---.+++++..+..|++.
T Consensus 156 ~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~------~~g~~~~~~~~tYnqg~~l~g~~~LY~~ 228 (349)
T 3k7x_A 156 IILSCWLYNELNETKYLEWAMKTYEWQTKVLVRED-GFVEDGINRL------EDGTIDYEWKFTYNQGVYIGANLELYRI 228 (349)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTT------SSSCBCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-CeEecCCccC------CCCccCCcCeeeHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 7787653210 0000111 2223667899999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHH
Q 003115 704 VAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 704 t~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
|++ +.|+++|+++++.+...+
T Consensus 229 T~d---~~yl~~a~~l~~~~~~~f 249 (349)
T 3k7x_A 229 TKE---AIYLDTANKTAAISLKEL 249 (349)
T ss_dssp HCC---HHHHHHHHHHHHHHHHHH
T ss_pred hCc---HHHHHHHHHHHHHHHHHh
Confidence 986 889999999999876544
No 21
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=5.7e-13 Score=124.46 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=78.0
Q ss_pred CccCcc-chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHH
Q 003115 120 PVDWFA-WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQ 196 (846)
Q Consensus 120 ~v~W~~-~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~p~~~~~y~~~~~ 196 (846)
.++|.. .++++++.|+.++|||+|.|+++||++|+.|....++++++++.++.+|+.++||.++ .+++.+.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~----- 82 (130)
T 2kuc_A 8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKY----- 82 (130)
T ss_dssp CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHT-----
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHc-----
Confidence 456632 3588999999999999999999999999999998889999999999899999999984 34444443
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003115 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.++|+++|++++|+++..
T Consensus 83 ---~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 83 ---GVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp ---TCCSSCEEEEECTTSCEEEE
T ss_pred ---CCCCCCEEEEECCCCcEEEE
Confidence 88899999999999998864
No 22
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.32 E-value=7.3e-11 Score=131.65 Aligned_cols=250 Identities=15% Similarity=0.107 Sum_probs=178.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCC---C-CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHV---P-HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDIL 409 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~v---P-HFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~ 409 (846)
+++.++.+...-+.++. -++. .|||.+ .|.. | .--.+.+||=++|.+++.|+++++|+.|+++|.+.+
T Consensus 106 ~~~~~~~~~~aA~~L~~--r~~~-~~g~i~-----sw~~~~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a 177 (377)
T 2ahf_A 106 DESARKLALDAADVLMR--RWRA-DAGIIQ-----AWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHA 177 (377)
T ss_dssp CHHHHHHHHHHHHHHHT--TEET-TTTEEC-----CBSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--hCCC-CCCeEE-----eccCCCCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57889999999888877 4664 578887 3431 2 122688899999999999999999999999999999
Q ss_pred HHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCC
Q 003115 410 DYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFK 489 (846)
Q Consensus 410 ~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~fe 489 (846)
+++++.+..++|.+|+...-|.. +
T Consensus 178 ~~~l~~~~r~dgs~~h~~~~D~~--------------------------------------------------------t 201 (377)
T 2ahf_A 178 LKSRRFLVRGDDSSYHTFYFDPE--------------------------------------------------------N 201 (377)
T ss_dssp HHHHHHTBBTTSCBCSEEEECTT--------------------------------------------------------T
T ss_pred HHHHHhCcCCCCCeEEEEEeeCC--------------------------------------------------------C
Confidence 99999999888988875433221 1
Q ss_pred CcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcc
Q 003115 490 GKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMF 569 (846)
Q Consensus 490 g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~ 569 (846)
|. ++|.. ....+.||..=+--+|.+|.||+.+|++++|
T Consensus 202 G~-~~~~~----------------------------------t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d------- 239 (377)
T 2ahf_A 202 GN-AIRGG----------------------------------THQGNTDGSTWTRGQAWGIYGFALNSRYLGN------- 239 (377)
T ss_dssp CC-EEEEE----------------------------------CSSSSSTTSCBHHHHHHHHHHHHHHHHHHTC-------
T ss_pred CC-eeeCC----------------------------------CcCCcCCcchhHHHHHHHHHHHHHHHHHHCC-------
Confidence 11 00100 0223556654444589999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC-----CHHHHH
Q 003115 570 NFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS-----GTKWLV 643 (846)
Q Consensus 570 ~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~-l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tg-----d~~yL~ 643 (846)
++||+.|+++++++.+++ +++|. ++.+..+..+....-++..|.++.||++|++.++ +++|++
T Consensus 240 ---------~~yL~~A~~la~~~l~~~--~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~ 308 (377)
T 2ahf_A 240 ---------ADLLETAKRMARHFLARV--PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFID 308 (377)
T ss_dssp ---------HHHHHHHHHHHHHHHTTC--CTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHhh--HHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 799999999999999998 34554 5544222222223446678899999999999996 788999
Q ss_pred HHHHHHHHHHHHccccC---CCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHh
Q 003115 644 WAIELQNTQDELFLDRE---GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 704 (846)
Q Consensus 644 ~A~~L~~~~~~~F~D~~---~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt 704 (846)
.|+++++.+.+.+.... .+|......-+ .......|..+|.|..-.+++|.||...+
T Consensus 309 ~A~~~l~~l~~~y~~~~~~~~~g~L~h~~~~----~~~~~~~d~~~~ygDy~~~Eal~r~~~~~ 368 (377)
T 2ahf_A 309 AAKTTVTALRDGYAERDDGEAEGFIRRGSYH----VRGGISPDDYTIWGDYYYLEALLRLERGV 368 (377)
T ss_dssp HHHHHHHHHHHHTBCCCCSSCCCSBSCBCSB----TTTTBSSSBCBHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeccccc----CCCCCCCCcCccHHHHHHHHHHHHHHcCC
Confidence 99999999988876542 12222221100 00011246778888888999999987743
No 23
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.31 E-value=1.6e-12 Score=123.17 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=78.1
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
+.+....++.++.++ +|||+|.|+++||++|+.|+...|+++++++.++ +++.++||.++..+-.... ++. .+
T Consensus 16 ~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l---~~~-~~ 88 (134)
T 2fwh_A 16 IKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVAL---LKH-LN 88 (134)
T ss_dssp CCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHH---HHH-TT
T ss_pred ecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHH---HHH-cC
Confidence 333333455555543 8999999999999999999999999999999886 5999999997544322222 222 38
Q ss_pred CCCCCcEEEECCCCcee--c-cccccCCCCCCCcccHHHHHHHH
Q 003115 201 GGGWPLSVFLSPDLKPL--M-GGTYFPPEDKYGRPGFKTILRKV 241 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~--~-~~tY~p~~~~~~~~~f~~~L~~i 241 (846)
+.|+|+++|+|++|+++ . ..++.+++ .|.+.|+++
T Consensus 89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~------~l~~~l~~~ 126 (134)
T 2fwh_A 89 VLGLPTILFFDGQGQEHPQARVTGFMDAE------TFSAHLRDR 126 (134)
T ss_dssp CCSSSEEEEECTTSCBCGGGCBCSCCCHH------HHHHHHHHC
T ss_pred CCCCCEEEEECCCCCEeeeeeeeeccCHH------HHHHHHHhc
Confidence 88999999999999997 3 23455533 455555543
No 24
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.30 E-value=5e-11 Score=133.61 Aligned_cols=211 Identities=11% Similarity=0.079 Sum_probs=159.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~ 413 (846)
+++.++.+...-+.++. -++ ..|||.+ +.+..- .|.-..+.+||-+-|.+++.|+++++|+.|+++|.+.+++++
T Consensus 132 ~~~~~~~~~~aA~~L~~--r~~-~~~g~iq-sw~~~~-~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l 206 (397)
T 2zzr_A 132 DVKALEATIKAADKLME--RYQ-EKGGFIQ-AWGELG-YKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASA 206 (397)
T ss_dssp CHHHHHHHHHHHHHHHT--TEE-TTTTEEC-CSSSTT-CGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HhC-cCCCEEE-ecccCC-CCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 57899999999998876 564 4688887 443211 122237888999999999999999999999999999999999
Q ss_pred HhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcce
Q 003115 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 493 (846)
Q Consensus 414 r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nv 493 (846)
+++..++|+.|+...-|.. +|..
T Consensus 207 ~~~~r~dgs~~h~~~~d~~--------------------------------------------------------~G~~- 229 (397)
T 2zzr_A 207 NNVVRDDSSAFHTFYFDPE--------------------------------------------------------TGEP- 229 (397)
T ss_dssp HHTBCTTSCBCSEEEECTT--------------------------------------------------------TCCE-
T ss_pred HhCcCCCCCeEEEEEeeCC--------------------------------------------------------CCCc-
Confidence 9999888999887554421 0110
Q ss_pred eeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 003115 494 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPV 573 (846)
Q Consensus 494 L~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~ 573 (846)
.+. .....+.||..=+--+|.+|.||+.+|++++|
T Consensus 230 ~~~----------------------------------~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d----------- 264 (397)
T 2zzr_A 230 LKG----------------------------------VTRQGYSDESSWARGQAWGIYGIPLSYRKMKD----------- 264 (397)
T ss_dssp EEE----------------------------------ECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccC----------------------------------CcccccCcchhhHHHHHHHHHHHHHHHHHHCC-----------
Confidence 000 00123556663333489999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCC---HH--HHHHHHH
Q 003115 574 VGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG---TK--WLVWAIE 647 (846)
Q Consensus 574 ~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~-l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd---~~--yL~~A~~ 647 (846)
++||+.|+++++++.+++ +++|. ++.+..++.+....=++..|.++.||++|++.|++ .+ |++.|++
T Consensus 265 -----~~yL~~A~~la~~~l~~~--~~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~ 337 (397)
T 2zzr_A 265 -----YQQIILFKGMTNYFLNRL--PEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHT 337 (397)
T ss_dssp -----HHHHHHHHHHHHHHHHTC--CTTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhh--HHhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Confidence 799999999999999998 34454 65553333332233367789999999999999987 78 9999999
Q ss_pred HHHHHHHHccc
Q 003115 648 LQNTQDELFLD 658 (846)
Q Consensus 648 L~~~~~~~F~D 658 (846)
+++.+...+..
T Consensus 338 ~l~~l~~~y~~ 348 (397)
T 2zzr_A 338 MLRSLIEQYSN 348 (397)
T ss_dssp HHHHHHHHTBC
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 25
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.27 E-value=3.9e-11 Score=134.30 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=137.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcC------CCC--CCCCchhhhchH---HHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 003115 507 LGMPLEKYLNILGECRRKLFDVRSK------RPR--PHLDDKVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVG 575 (846)
Q Consensus 507 ~g~~~~~l~~~l~~~r~~L~~~R~~------R~~--P~~DdKilt~WN---glmI~ALa~A~~v~~d~~~~~~~~~~~~~ 575 (846)
.+++.+++++.|+.+.++|...|+. |.+ |.+|+|++++|| |+++.+|.++|+++||
T Consensus 20 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd------------- 86 (382)
T 3pmm_A 20 RFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD------------- 86 (382)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hcCCHHHHHHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC-------------
Confidence 4678899999999999999999876 655 789999999999 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 576 SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 576 ~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
++|++.|++..+.+.+. +|.+ ...+|++++ .+++++|+.|||++|++.|.++++.+.+.
T Consensus 87 ---~~y~~~a~~~~~~~~~~-----~~~~------------~n~D~~~~~-~~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~ 145 (382)
T 3pmm_A 87 ---IEMRDIIDRWFADRFAE-----GATT------------KNVNTMAPF-LTLAYRFEETGRMAYLPWLESWAEWAMHE 145 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----CCCC------------CCTTTTTTH-HHHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcC-----CCCc------------CcccchHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 79999999987755332 2221 235566665 48899999999999999999999999888
Q ss_pred ccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003115 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 728 (846)
+.+.+.|+|+....+.+ ....-..| +..+.+..|.+++++||+ ++|.+.|.+.+..+...+.
T Consensus 146 ~~r~~~Ggf~~~~~~~~---~~~~~WiD-----gl~M~~p~La~~~~~tgd---~~y~d~A~~q~~~~~~~l~ 207 (382)
T 3pmm_A 146 MPRTEQGGMQHMTLAEE---NHQQMWDD-----TLMMTVLPLAKIGKLLNR---PQYVEEATYQFLLHVQNLM 207 (382)
T ss_dssp SCBCGGGCBCCCCSSCC---CTTEEETT-----HHHHTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHB
T ss_pred CCCCcCCCeeeecCCCC---CCCcEEec-----chhhhHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHcc
Confidence 88777888876421110 00001112 345666788999999996 8899999888877777664
No 26
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=6.6e-11 Score=118.89 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=90.7
Q ss_pred CccCcc-chHHHHHHH----HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHH-
Q 003115 120 PVDWFA-WGEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT- 193 (846)
Q Consensus 120 ~v~W~~-~~~eAl~~A----k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~- 193 (846)
-..|+. -+++|+++| |+++|++||+++.+||.+|++|.+++|.|++|.++||+|||....|++.. +..+.+..
T Consensus 32 ~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~-e~~~~~~~~ 110 (178)
T 2ec4_A 32 HPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKD-SNRARFLTM 110 (178)
T ss_dssp CCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSH-HHHHHHHHH
T ss_pred CCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCc-hhhhhhhhh
Confidence 345555 369999999 99999999999999999999999999999999999999999999999853 32222211
Q ss_pred --------HHHHh--cCCCCCCcEEEECCCCc---eecc-ccccCCCCCCCcccHHHHHHHHHHHHH
Q 003115 194 --------YVQAL--YGGGGWPLSVFLSPDLK---PLMG-GTYFPPEDKYGRPGFKTILRKVKDAWD 246 (846)
Q Consensus 194 --------~~~~~--~g~~G~P~~v~l~pdg~---~~~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (846)
....+ .+..++|+.+|+++.+. ++.. .|+.+++ .|++.|..+.+.|+
T Consensus 111 ~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~------~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 111 CNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVD------ELMMRLMAAMEIFT 171 (178)
T ss_dssp HHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHH------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHH------HHHHHHHHHHHHhh
Confidence 11111 36789999999998853 3332 2455544 67777777777665
No 27
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.17 E-value=6.6e-11 Score=134.28 Aligned_cols=201 Identities=13% Similarity=0.082 Sum_probs=142.4
Q ss_pred eeeccCCchHHHHHcCC-CHHHHHHHHHHHHHHHHhhhc-----C-CCCCCCC--------------chhhhchHHHHHH
Q 003115 493 VLIELNDSSASASKLGM-PLEKYLNILGECRRKLFDVRS-----K-RPRPHLD--------------DKVIVSWNGLVIS 551 (846)
Q Consensus 493 vL~~~~~~~~~a~~~g~-~~~~l~~~l~~~r~~L~~~R~-----~-R~~P~~D--------------dKilt~WNglmI~ 551 (846)
-||+..+ ++---+|. +.+++++.|+.+.+.|-+.-- . -....+| -......+|+|+.
T Consensus 12 ~~~~~~~--~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv~l~ 89 (445)
T 3k11_A 12 PLHLLQP--AYQGTYGDLTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGVTYS 89 (445)
T ss_dssp CGGGSCC--CCSSCCSCCCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHHHHH
T ss_pred chhhcCC--CCCCCCCcCCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHHHHH
Confidence 3555443 12223444 568899999988888876211 1 0111111 1111234799999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc------cccCCCeEEEEecCCCCCCCCCcchHHHH
Q 003115 552 SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL------YDEQTHRLQHSFRNGPSKAPGFLDDYAFL 625 (846)
Q Consensus 552 ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l------~d~~~G~l~~~~~dg~~~~~~~leDyA~~ 625 (846)
||+++++++|| ++|++.|++..+||.+++ ++. +|++.+.++++ . ..+++|||+++
T Consensus 90 gl~~ay~~Tgd----------------~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~~-~-~~~~LDD~g~~ 150 (445)
T 3k11_A 90 ALIAAAETTGD----------------KRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQI-L-TPHALDDAGAV 150 (445)
T ss_dssp HHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHH-H-SCCSGGGTHHH
T ss_pred HHHHHHHHHCC----------------HHHHHHHHHHHHHHHhccchhhhhhhc-cCCeecccccc-c-CCCcchhHHHH
Confidence 99999999998 899999999999998753 343 57777767665 2 37899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhC
Q 003115 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 705 (846)
Q Consensus 626 i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~ 705 (846)
+.+++++|++|++++|++.|.++++.+.++|.+.++|+|+........+. .| +..+..-.|.+++.+|+
T Consensus 151 ~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~W------iD-----~lyM~~pfla~~~~~tg 219 (445)
T 3k11_A 151 CTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTLW------LD-----DMFMGIPAVAQMSRYDK 219 (445)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEE------TH-----HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCceE------ec-----chhhHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999888888886422111111 12 22345566788999998
Q ss_pred CCCchH--HHHHHHHHHHHHHHHHH
Q 003115 706 GSKSDY--YRQNAEHSLAVFETRLK 728 (846)
Q Consensus 706 ~~~~~~--y~~~A~~~l~~~~~~i~ 728 (846)
+ ++ |.+.|.+-+..+...+.
T Consensus 220 d---~~~~y~d~A~~q~~~~~~~l~ 241 (445)
T 3k11_A 220 E---AKNKYLAEAVKQFLQFADRMF 241 (445)
T ss_dssp G---GHHHHHHHHHHHHHHHHHHHE
T ss_pred C---cchHHHHHHHHHHHHHHHhcc
Confidence 6 67 88888776666665553
No 28
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.16 E-value=6.9e-11 Score=116.40 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=67.7
Q ss_pred CCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHH
Q 003115 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (846)
Q Consensus 118 ~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~ 197 (846)
...++|..+ +++++.+..++|||+|+|+++||++|+.|.. .|++-......+-.||.|.+|.++.+ +...|
T Consensus 27 ~~~i~w~~~-~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~------ 97 (164)
T 1sen_A 27 GDHIHWRTL-EDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP-KDEDF------ 97 (164)
T ss_dssp CTTSCBCCH-HHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC-SCGGG------
T ss_pred cccccccCH-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH-HHHHh------
Confidence 356999555 7999999999999999999999999999997 55543222223457888887765332 33333
Q ss_pred hcCC--CCCCcEEEECCCCceecc
Q 003115 198 LYGG--GGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 198 ~~g~--~G~P~~v~l~pdg~~~~~ 219 (846)
+. .++|+++|+|++|+++..
T Consensus 98 --~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 98 --SPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp --CTTCSCSSEEEEECTTSCBCTT
T ss_pred --cccCCcCCeEEEECCCCCEEEE
Confidence 44 569999999999998864
No 29
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.13 E-value=2.5e-11 Score=113.60 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=71.2
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC--ccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~--p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
.++++|+|+++||++|+.|+++++++.++.+.+. .+..++||+++. +++...| ++.|.||+||++ +|+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~--------~V~g~PT~i~f~-~G~ 87 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELAR--------PVTFTPTFVLMA-GDV 87 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSS--------CCCSSSEEEEEE-TTE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHC--------CCCCCCEEEEEE-CCE
Confidence 3689999999999999999999999988766664 466667777654 4555444 778999999999 999
Q ss_pred eecc-ccccCCCCCCCcccHHHHHHHHHHH
Q 003115 216 PLMG-GTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 216 ~~~~-~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
++.. .+|.+++ .|.+.|+++...
T Consensus 88 ev~Ri~G~~~~~------~f~~~L~~~l~~ 111 (116)
T 3dml_A 88 ESGRLEGYPGED------FFWPMLARLIGQ 111 (116)
T ss_dssp EEEEEECCCCHH------HHHHHHHHHHHH
T ss_pred EEeeecCCCCHH------HHHHHHHHHHhh
Confidence 9875 4677765 688888877543
No 30
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.13 E-value=1.1e-10 Score=105.64 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=70.5
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.+...++++++.+++++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| +
T Consensus 7 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~ 75 (112)
T 1ep7_A 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPL-F--ETLSNDYAGKVIFLKVDVDAVAAVAEAA--------G 75 (112)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTTHHHHHHH--------T
T ss_pred ecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHcCCCeEEEEEECCchHHHHHHc--------C
Confidence 344444578888888889999999999999999999874 3 4567667668999999999888877766 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
+.++|+++|+ ++|+++..
T Consensus 76 v~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 76 ITAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp CCBSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCeEEEE
Confidence 8899998777 79998754
No 31
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.09 E-value=4.7e-10 Score=124.99 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=112.2
Q ss_pred hhch---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC
Q 003115 542 IVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 618 (846)
Q Consensus 542 lt~W---NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~ 618 (846)
-++| ||+++.+|+++++++|| ++|++.|++.++++. ++ +|++. ++.+.
T Consensus 36 ~~~W~w~~G~~~~gl~~~y~~tgd----------------~~y~~~a~~~~~~~~----~~-~g~l~--~~~~~------ 86 (373)
T 1nc5_A 36 ANRWHYHQGVFLCGVLRLWEATGE----------------KRYFEYAKAYADLLI----DD-NGNLL--FRRDE------ 86 (373)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHB----CT-TCCBC--CCTTC------
T ss_pred CCCcchhHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHh----CC-CCccc--CCCCC------
Confidence 5789 99999999999999998 799999999999874 32 35443 44332
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHH
Q 003115 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (846)
++||+ ++.+++++|++|||++|++.|+++.+.+.++| +.+.|+|+.+...+. +...|+ ..+++..|.
T Consensus 87 lDd~~-~g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~-r~~~G~fw~~~~~~~------~~w~D~-----l~m~~p~L~ 153 (373)
T 1nc5_A 87 LDAIQ-AGLILFPLYEQTKDERYVKAAKRLRSLYGTLN-RTSEGGFWHKDGYPY------QMWLDG-----LYMGGPFAL 153 (373)
T ss_dssp GGGTG-GGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSC-BCTTSCBCSCTTSTT------EEETHH-----HHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-CCCCCCeeccCCCCC------eEEeCc-----HHHHHHHHH
Confidence 88888 67899999999999999999999999998777 666788876532211 112232 225677899
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003115 699 RLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 699 rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 728 (846)
+++++||+ ++|.+.|.+.+..+...+.
T Consensus 154 ~l~~~tgd---~~y~d~A~~~~~~~~~~l~ 180 (373)
T 1nc5_A 154 KYANLKQE---TELFDQVVLQESLMRKHTK 180 (373)
T ss_dssp HHHHHHTC---THHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCC---HHHHHHHHHHHHHHHHHhc
Confidence 99999996 7899999999999988874
No 32
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.09 E-value=7.9e-09 Score=115.61 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCC--CCCCcchHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSK--APGFLDDYA 623 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~~~--~~~~leDyA 623 (846)
.|.+-.|+++++++|| ++|++.|.+-+....++++|+++|.++|.+. .|... .....-.++
T Consensus 173 ~M~~p~La~~~~~tgd----------------~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~g 236 (382)
T 3pmm_A 173 MMTVLPLAKIGKLLNR----------------PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNS 236 (382)
T ss_dssp HHTHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHH
T ss_pred hhhHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceeccccc
Confidence 3556789999999998 8999999999999999999999999999863 33221 223333789
Q ss_pred HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHH
Q 003115 624 FLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 696 (846)
Q Consensus 624 ~~i~aLl~LYe~-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~ 696 (846)
+++.|+.+.++. ++.+++++.++++++.+.++- + ++|.|+... +++. ...+-|+.++++-.
T Consensus 237 W~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q-~-~~G~W~~~~-d~~~---------~y~EsSatA~~ay~ 304 (382)
T 3pmm_A 237 WLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQ-D-DSGLWHTLL-DDPH---------SYLEASATAGFAYG 304 (382)
T ss_dssp HHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHC-C-TTSCEESBT-TCTT---------SCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcC-C-CCCChhhcc-CCCC---------CCccccHHHHHHHH
Confidence 999999999998 567789999999999998865 5 456444332 2221 11245888999999
Q ss_pred HHHHHH--HhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 697 LVRLAS--IVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 697 L~rL~~--lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
|++..+ +.+ +.|++.|+++++.+...+
T Consensus 305 ll~~~~~g~l~----~~Y~~~a~ka~~~l~~~i 333 (382)
T 3pmm_A 305 ILKAVRKRYVG----QHYAGVAEKAIRGIVQNI 333 (382)
T ss_dssp HHHHHHTTSSC----GGGHHHHHHHHHHHHHTB
T ss_pred HHHHHHcCCCc----HHHHHHHHHHHHHHHhhC
Confidence 999888 332 679999999999987654
No 33
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.08 E-value=2.9e-10 Score=102.86 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=76.8
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.+...+++.++.|+..+|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +
T Consensus 9 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 76 (113)
T 1ti3_A 9 CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI-F--AELAKKFP-NVTFLKVDVDELKAVAEEW--------N 76 (113)
T ss_dssp ECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTCHHHHHHH--------H
T ss_pred eccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHhCC-CcEEEEEEccccHHHHHhC--------C
Confidence 444445688888888899999999999999999999863 2 34444443 7999999999888877766 6
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..++|+++|+ .+|+++.......+ +.+.+.|+++.
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g~~~------~~l~~~l~~~~ 111 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDKTVGADK------DGLPTLVAKHA 111 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEEEECCCT------THHHHHHHHHH
T ss_pred CCcccEEEEE-eCCEEEEEEecCCH------HHHHHHHHHhh
Confidence 7899999988 79998764222233 25666666553
No 34
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.07 E-value=6.2e-09 Score=115.95 Aligned_cols=257 Identities=12% Similarity=0.098 Sum_probs=174.0
Q ss_pred CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHH
Q 003115 310 PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVY 389 (846)
Q Consensus 310 P~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~y 389 (846)
++...+.-|+..+..++ +++.++.+....+.+. +. +|... |..+ + .|+-.+..++
T Consensus 42 ~~G~~~~gl~~~y~~tg-------d~~y~~~a~~~~~~~~-----~~-~g~l~-~~~~------~-----lDd~~~g~~l 96 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEATG-------EKRYFEYAKAYADLLI-----DD-NGNLL-FRRD------E-----LDAIQAGLIL 96 (373)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHB-----CT-TCCBC-CCTT------C-----GGGTGGGGGH
T ss_pred hHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHh-----CC-CCccc-CCCC------C-----cchHHHHHHH
Confidence 34444556666666554 5789999999988764 21 23221 2211 1 3333367789
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhc
Q 003115 390 LDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYY 469 (846)
Q Consensus 390 a~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~ 469 (846)
.++|++|+++.|++.|.+..++|......++|||+...+
T Consensus 97 l~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~~~----------------------------------------- 135 (373)
T 1nc5_A 97 FPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDG----------------------------------------- 135 (373)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTT-----------------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeeccCC-----------------------------------------
Confidence 999999999999999999999997766455677764200
Q ss_pred ccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH
Q 003115 470 LKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV 549 (846)
Q Consensus 470 i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglm 549 (846)
+ ..+ + ..|. ..+.
T Consensus 136 -----~-------------~~~--~-----------------------------------------w~D~------l~m~ 148 (373)
T 1nc5_A 136 -----Y-------------PYQ--M-----------------------------------------WLDG------LYMG 148 (373)
T ss_dssp -----S-------------TTE--E-----------------------------------------ETHH------HHHH
T ss_pred -----C-------------CCe--E-----------------------------------------EeCc------HHHH
Confidence 0 000 0 0111 1245
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCC-------CC--CCCc
Q 003115 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS-------KA--PGFL 619 (846)
Q Consensus 550 I~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~-------~~--~~~l 619 (846)
+..|+++++++|| ++|++.|.+.+....++++|+++|.++|.+.. ++. .. ....
T Consensus 149 ~p~L~~l~~~tgd----------------~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~Wa 212 (373)
T 1nc5_A 149 GPFALKYANLKQE----------------TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWA 212 (373)
T ss_dssp HHHHHHHHHHHTC----------------THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBH
T ss_pred HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCccc
Confidence 7789999999998 78999999999999999999999988887642 211 00 1112
Q ss_pred chHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHH
Q 003115 620 DDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a 694 (846)
-.+++++.|+.++++. +++++|++.++++++.+.++. ++++|.|.... +++.... .-.+-|+.++++
T Consensus 213 Rg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q-~~~dG~W~~~l-d~~~~~~------~~~EsSatA~~a 284 (373)
T 1nc5_A 213 RSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQ-DKETGLWYQIV-DKGDRSD------NWLESSGSCLYM 284 (373)
T ss_dssp HHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTS-CTTTSCCBSBT-TCTTSTT------CCBCHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhc-CCCCCceeeec-CCCCCCC------CCccccHHHHHH
Confidence 2789999999999998 688899999999999998765 65566444211 1111000 012348888899
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 695 INLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 695 ~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
-.|+++.+.--- +++|+..|+++++.+..
T Consensus 285 y~l~~g~~~g~l--~~~Y~~~a~k~~~~l~~ 313 (373)
T 1nc5_A 285 YAIAKGINKGYL--DRAYETTLLKAYQGLIQ 313 (373)
T ss_dssp HHHHHHHHHTSS--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC--cHHHHHHHHHHHHHHHH
Confidence 999988755211 26799999999888755
No 35
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.06 E-value=1.3e-10 Score=108.13 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=63.3
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEc--CCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD--REERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD--~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
.+..++|+++|.|+++||++|+.|.... .++++.++.++..++|| .++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~--------~v~~~Pt~~~~ 89 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKY--------DANIVPTTVFL 89 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHc--------CCcceeEEEEE
Confidence 4567899999999999999999998744 56777776789999999 77666665554 88899999999
Q ss_pred CCCCceecc
Q 003115 211 SPDLKPLMG 219 (846)
Q Consensus 211 ~pdg~~~~~ 219 (846)
+++|+++..
T Consensus 90 ~~~G~~~~~ 98 (126)
T 2l57_A 90 DKEGNKFYV 98 (126)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 999998764
No 36
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.06 E-value=2.8e-10 Score=107.75 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=65.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
.+|||+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|+++|++++|++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~~g~~ 118 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKEPELARDF--------GIQSIPTIWFVPMKGEP 118 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSSCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCCHHHHHHc--------CCCCcCEEEEEeCCCCE
Confidence 589999999999999999998744 6777778778999999999988877766 88999999999999998
Q ss_pred eccccccC
Q 003115 217 LMGGTYFP 224 (846)
Q Consensus 217 ~~~~tY~p 224 (846)
+...++.+
T Consensus 119 ~~~~G~~~ 126 (141)
T 3hxs_A 119 QVNMGALS 126 (141)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 75444444
No 37
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.05 E-value=5.9e-10 Score=100.45 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=68.9
Q ss_pred cchHHHHHHHH-hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 125 AWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 125 ~~~~eAl~~Ak-~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
....+.++.+. +.+|+++|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.+
T Consensus 8 ~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~ 76 (111)
T 3gnj_A 8 KLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEKTLFQRF--------SLKG 76 (111)
T ss_dssp ECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCS
T ss_pred ecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcChhHHHhc--------CCCc
Confidence 34567777776 8899999999999999999998743 6677777767999999999988877666 8899
Q ss_pred CCcEEEECCCCceecc
Q 003115 204 WPLSVFLSPDLKPLMG 219 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~ 219 (846)
+|+++|+ .+|+++..
T Consensus 77 ~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 77 VPQILYF-KDGEYKGK 91 (111)
T ss_dssp SCEEEEE-ETTEEEEE
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 78888753
No 38
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.05 E-value=3.5e-10 Score=102.97 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=65.7
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
..+-|+++.+++|+|+|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 13 ~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~-~~~~~~vd~~~~~~l~~~~--------~v~~~Pt 80 (109)
T 3f3q_A 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQYP-QADFYKLDVDELGDVAQKN--------EVSAMPT 80 (109)
T ss_dssp SHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred CHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCCccCE
Confidence 3677888889999999999999999999998633 44555443 5888899999888877666 8899999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|++ +|+++..
T Consensus 81 ~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 81 LLLFK-NGKEVAK 92 (109)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCEEEEE
Confidence 99998 8988764
No 39
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.05 E-value=2.9e-10 Score=103.97 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++.++. ..+|||+|+|+++||+.|+.|.... .++++.. .+.+.++||.++.|++.+.| ++.|+||+
T Consensus 12 ~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~d~~~~l~~~~--------~V~~~PT~ 77 (105)
T 3zzx_A 12 TKQLNE--AGNKLVVIDFYATWCGPCKMIAPKL---EELSQSM-SDVVFLKVDVDECEDIAQDN--------QIACMPTF 77 (105)
T ss_dssp HHHHHH--TTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTEEEEEEETTTCHHHHHHT--------TCCBSSEE
T ss_pred HHHHHh--cCCCEEEEEEECCCCCCccCCCcch---hhhhhcc-CCeEEEEEecccCHHHHHHc--------CCCeecEE
Confidence 444444 3489999999999999999998633 3455554 47899999999999988777 89999998
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+|+ .+|+++..
T Consensus 78 ~~~-~~G~~v~~ 88 (105)
T 3zzx_A 78 LFM-KNGQKLDS 88 (105)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCEEEEE
Confidence 888 68998864
No 40
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.04 E-value=3e-10 Score=107.54 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=61.9
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
+.+||++|.|+++||++|+.|... | .++++.++.++..++||.++.+++.+.| ++.++|+++|++++|+
T Consensus 36 ~~~k~~lv~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~G~ 104 (136)
T 2l5l_A 36 EGDKPAIVDFYADWCGPCKMVAPI-L--DELAKEYDGQIVIYKVDTEKEQELAGAF--------GIRSIPSILFIPMEGK 104 (136)
T ss_dssp CCSSCEEEEEECTTSHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSCEEEEECSSSC
T ss_pred cCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhcCCEEEEEEeCCCCHHHHHHc--------CCCCCCEEEEECCCCc
Confidence 368999999999999999999874 3 5677777777999999999888777665 8889999999999999
Q ss_pred eec
Q 003115 216 PLM 218 (846)
Q Consensus 216 ~~~ 218 (846)
++.
T Consensus 105 ~~~ 107 (136)
T 2l5l_A 105 PEM 107 (136)
T ss_dssp CEE
T ss_pred EEE
Confidence 874
No 41
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.04 E-value=1.2e-10 Score=104.02 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++.+.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| +..++|+++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 76 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDENPETTSQF--------GIMSIPTLI 76 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCCHHHHHHc--------CCccccEEE
Confidence 45667778899999999999999999998743 5677777667999999999888776665 888999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
++ ++|+++..
T Consensus 77 ~~-~~G~~~~~ 86 (105)
T 1nsw_A 77 LF-KGGRPVKQ 86 (105)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 99 89998764
No 42
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.03 E-value=3.9e-10 Score=105.45 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=69.0
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.....++++++.|+.++|+++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 21 l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~ 88 (124)
T 1xfl_A 21 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF-F--ADLAKKLP-NVLFLKVDTDELKSVASDW--------A 88 (124)
T ss_dssp ESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECccCHHHHHHc--------C
Confidence 334444588899999899999999999999999999863 3 34555443 7999999999888777666 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
+.++|+++|+ ++|+++..
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 8899998887 89998764
No 43
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.02 E-value=3e-10 Score=101.70 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++.+.+++||++|.|+++||++|+.|... + .++++.+..++..+.||.++.+++.+.| ++.++|+++
T Consensus 12 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~ 80 (109)
T 3tco_A 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPI-Y--KKVAEKYKGKAVFGRLNVDENQKIADKY--------SVLNIPTTL 80 (109)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHhhhHH-H--HHHHHHhCCCceEEEEccccCHHHHHhc--------CcccCCEEE
Confidence 4556666779999999999999999999863 2 4566666667999999999998877666 889999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ ++|+++..
T Consensus 81 ~~-~~g~~~~~ 90 (109)
T 3tco_A 81 IF-VNGQLVDS 90 (109)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-cCCcEEEe
Confidence 99 99998764
No 44
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.02 E-value=4.8e-10 Score=103.32 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.+-++++.+ ++|+|+|.|+++||+.|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|
T Consensus 19 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~P 86 (116)
T 3qfa_C 19 KTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASEC--------EVKSMP 86 (116)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHH---HHHHTTCT-TSEEEEEETTTTHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCcccc
Confidence 444555444 799999999999999999998632 23444443 4899999999988877766 889999
Q ss_pred cEEEECCCCceecc
Q 003115 206 LSVFLSPDLKPLMG 219 (846)
Q Consensus 206 ~~v~l~pdg~~~~~ 219 (846)
+++|+ .+|+++..
T Consensus 87 t~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 87 TFQFF-KKGQKVGE 99 (116)
T ss_dssp EEEEE-SSSSEEEE
T ss_pred EEEEE-eCCeEEEE
Confidence 99999 78988754
No 45
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.02 E-value=7.8e-10 Score=99.13 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=64.6
Q ss_pred HHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 129 EAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 129 eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
+.+.. ..+.+||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| +..++|++
T Consensus 9 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~ 77 (107)
T 1dby_A 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDESPNVASEY--------GIRSIPTI 77 (107)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHH--------TCCSSCEE
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCCcCCEE
Confidence 44444 567799999999999999999998743 5677777667999999999888877766 88899998
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+++ ++|+++..
T Consensus 78 ~~~-~~G~~~~~ 88 (107)
T 1dby_A 78 MVF-KGGKKCET 88 (107)
T ss_dssp EEE-SSSSEEEE
T ss_pred EEE-eCCEEEEE
Confidence 887 79998764
No 46
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.01 E-value=4.9e-10 Score=102.13 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=68.5
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.+...++++++.|+.++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +
T Consensus 11 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~ 78 (118)
T 2vm1_A 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPV-F--AEYAKKFP-GAIFLKVDVDELKDVAEAY--------N 78 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTSHHHHHHT--------T
T ss_pred ecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHH-H--HHHHHHCC-CcEEEEEEcccCHHHHHHc--------C
Confidence 445555688999999999999999999999999999863 2 34444443 7899999999888776665 7
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
..++|+++|+ ++|+++..
T Consensus 79 v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-eCCeEEEE
Confidence 8899999888 78988753
No 47
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.00 E-value=4.7e-10 Score=102.17 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=69.2
Q ss_pred hccCCCccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH
Q 003115 115 QHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY 194 (846)
Q Consensus 115 ~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~ 194 (846)
++.++|..+..-..+-++++.+++|+++|.|+++||++|+.|.... .++++... ++..++||.++.+++.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~~~~~~~~~--- 75 (112)
T 1syr_A 3 HHHHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT-KMVFIKVDVDEVSEVTEKE--- 75 (112)
T ss_dssp ------CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTTHHHHHHT---
T ss_pred ccccceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCEEEEEECCCCHHHHHHc---
Confidence 3455666666666788888888999999999999999999998743 44555543 6999999999888776655
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.++|+++|+ .+|+++..
T Consensus 76 -----~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 76 -----NITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp -----TCCSSSEEEEE-ETTEEEEE
T ss_pred -----CCCcccEEEEE-ECCcEEEE
Confidence 88899998777 58988753
No 48
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.99 E-value=6.6e-10 Score=99.77 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=63.1
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
..+++||++|.|+++||++|+.|... + .++++.++.++..++||.++.+++.+.| +..|+|+++|+ ++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 83 (108)
T 2trx_A 16 VLKADGAILVDFWAEWCGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KN 83 (108)
T ss_dssp TTTCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCTTHHHHT--------TCCSSSEEEEE-ET
T ss_pred HHhcCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCcccCEEEEE-eC
Confidence 35789999999999999999999874 3 5677777767999999999988887666 88899999999 89
Q ss_pred Cceecc
Q 003115 214 LKPLMG 219 (846)
Q Consensus 214 g~~~~~ 219 (846)
|+++..
T Consensus 84 G~~~~~ 89 (108)
T 2trx_A 84 GEVAAT 89 (108)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 998754
No 49
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.99 E-value=5.4e-10 Score=105.60 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=69.4
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.+...+++++..|+.++|+|+|.|+++||++|+.|... + .++++.+ .++..++||.++.+++.+.| +
T Consensus 29 i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~-~~v~~~~v~~~~~~~~~~~~--------~ 96 (139)
T 3d22_A 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY-Y--IELSENY-PSLMFLVIDVDELSDFSASW--------E 96 (139)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHC-CCCEEEEEeCcccHHHHHHc--------C
Confidence 444445688899998899999999999999999999863 2 3444444 36899999999888877666 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
+.|+|+++|+ ++|+++..
T Consensus 97 v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp CCEESEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCeEEEE
Confidence 8899999988 89998754
No 50
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.99 E-value=5.1e-10 Score=102.13 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.++++. .+|+++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (112)
T 2voc_A 10 SFSAET-SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDENQETAGKY--------GVMSIPTLLV 77 (112)
T ss_dssp THHHHH-SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTCCSHHHHT--------TCCSBSEEEE
T ss_pred HHHHHh-CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCCcccEEEE
Confidence 344444 899999999999999999998754 6778878778999999999999887766 8889999999
Q ss_pred ECCCCceecc
Q 003115 210 LSPDLKPLMG 219 (846)
Q Consensus 210 l~pdg~~~~~ 219 (846)
+ ++|+++..
T Consensus 78 ~-~~G~~~~~ 86 (112)
T 2voc_A 78 L-KDGEVVET 86 (112)
T ss_dssp E-ETTEEEEE
T ss_pred E-eCCEEEEE
Confidence 9 99998764
No 51
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.99 E-value=9.2e-10 Score=101.63 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=64.4
Q ss_pred HHHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++-+.+ ..+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 20 ~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 88 (119)
T 1w4v_A 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPR-L--EKMVAKQHGKVVMAKVDIDDHTDLAIEY--------EVSAVPT 88 (119)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTSSEEEEEETTTTHHHHHHT--------TCCSSSE
T ss_pred hhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCCHHHHHHc--------CCCcccE
Confidence 344444 46789999999999999999999864 3 4566666667999999999888776655 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ ++|+++..
T Consensus 89 ~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 89 VLAM-KNGDVVDK 100 (119)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9999 89998753
No 52
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=1.4e-09 Score=101.36 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
..+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|++++
T Consensus 31 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~ 99 (130)
T 2dml_A 31 VIQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKHQSLGGQY--------GVQGFPTIKIFGAN 99 (130)
T ss_dssp TTTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHH--------TCCSSSEEEEESSC
T ss_pred HhcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCCHHHHHHc--------CCCccCEEEEEeCC
Confidence 446799999999999999999998754 6777777777999999999888877766 78899999999999
Q ss_pred Cce
Q 003115 214 LKP 216 (846)
Q Consensus 214 g~~ 216 (846)
|+.
T Consensus 100 ~~~ 102 (130)
T 2dml_A 100 KNK 102 (130)
T ss_dssp TTS
T ss_pred CCe
Confidence 883
No 53
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.97 E-value=1.1e-09 Score=100.78 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=65.4
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+++.+..|++++||++|.|+++||++|+.|.. .|+ ++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l~--~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 90 (122)
T 2vlu_A 23 WTMQIEEANTAKKLVVIDFTASWCGPCRIMAP-VFA--DLAKKFP-NAVFLKVDVDELKPIAEQF--------SVEAMPT 90 (122)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHhhccCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHCC-CcEEEEEECCCCHHHHHHc--------CCCcccE
Confidence 47788888889999999999999999999986 342 4555554 4899999999888877666 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ ++|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 91 FLFM-KEGDVKDR 102 (122)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCEEEEE
Confidence 8877 89998753
No 54
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.96 E-value=1.7e-08 Score=114.51 Aligned_cols=268 Identities=12% Similarity=0.109 Sum_probs=186.6
Q ss_pred CCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCC-----CcccCCCcE-EEEEcCCCCCCCCCchhHHHH
Q 003115 309 FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG-----IHDHVGGGF-HRYSVDERWHVPHFEKMLYDQ 382 (846)
Q Consensus 309 FP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GG-----i~D~vgGGF-~RYsvD~~W~vPHFEKMLyDN 382 (846)
+|+...+.-|++.+..++ +++.++.+.+..+-+..+- +.|. +|+. +||.- +..|+ .|-|.
T Consensus 82 y~~Gv~l~gl~~ay~~Tg-------d~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~---~~~~~---~LDD~ 147 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTG-------DKRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQ---ILTPH---ALDDA 147 (445)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHH---HHSCC---SGGGT
T ss_pred cCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHhccchhhhhhhc-cCCeeccccc---ccCCC---cchhH
Confidence 566666777777777654 4788888887777655310 1233 2333 22221 12244 47789
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhH
Q 003115 383 GQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA 461 (846)
Q Consensus 383 A~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~ 461 (846)
|.+++++.++|+.++++.|++.|.+.++||.+.+. .++|||+.. +. .+ .-+|-
T Consensus 148 g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~---~~---------~~--~q~Wi------------ 201 (445)
T 3k11_A 148 GAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARN---RP---------QR--NTLWL------------ 201 (445)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBC---SS---------ST--TEEET------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeec---CC---------CC--CceEe------------
Confidence 99999999999999999999999999999999885 456888762 10 00 00111
Q ss_pred HHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 003115 462 ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKV 541 (846)
Q Consensus 462 ~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKi 541 (846)
|.
T Consensus 202 ----------------------------------------------------------------------------D~-- 203 (445)
T 3k11_A 202 ----------------------------------------------------------------------------DD-- 203 (445)
T ss_dssp ----------------------------------------------------------------------------HH--
T ss_pred ----------------------------------------------------------------------------cc--
Confidence 11
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH--HHHHHHHHHHHHHHhccccCCCeEEEEecCCC-CCCC-C
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE--YMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-SKAP-G 617 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~--yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~-~~~~-~ 617 (846)
..|.+--|+++++++|| ++ |++.|.+-+....++++|+++|.++|.+.... .... .
T Consensus 204 ----lyM~~pfla~~~~~tgd----------------~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~ 263 (445)
T 3k11_A 204 ----MFMGIPAVAQMSRYDKE----------------AKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFC 263 (445)
T ss_dssp ----HHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCC
T ss_pred ----hhhHHHHHHHHHHHHCC----------------cchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcce
Confidence 13557789999999998 67 99999999999999999999999999875432 1111 2
Q ss_pred CcchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHH
Q 003115 618 FLDDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv 692 (846)
..-.+++++.|++++++. ++...+++..+++++.+.++- ++ +|.|+...+ ++. ...+-|+.++
T Consensus 264 WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q-~~-~G~W~~vld-~~~---------~y~EsSaTAm 331 (445)
T 3k11_A 264 WARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQ-SG-EGFWHQLLD-CND---------SYLETSATAI 331 (445)
T ss_dssp BHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTC-CT-TSCEESBTT-CTT---------SCEEHHHHHH
T ss_pred ecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhC-CC-CCchhhccC-CCC---------CCCCccHHHH
Confidence 333789999999999997 667789999999999998754 54 565443322 111 1134588889
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 693 SVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
++-.|++..+.--- ....|+..|+++++.+...+
T Consensus 332 faygllkgvr~G~L-d~~~Y~~~A~ka~~~L~~~i 365 (445)
T 3k11_A 332 YVYCLAHAINKGWI-DAIAYGPVAQLGWHAVAGKI 365 (445)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhC
Confidence 99999888775221 12479999999999886544
No 55
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.96 E-value=1.6e-10 Score=108.11 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.+..+..++|+|+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~ 100 (128)
T 3ul3_B 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNESLARKF--------SVKSLPTI 100 (128)
T ss_dssp CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCHHHHHHT--------TCCSSSEE
T ss_pred ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCCcCEE
Confidence 334566678899999999999999999998754 6778888778999999999888877666 88999999
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+|+ .+|+++..
T Consensus 101 ~~~-~~G~~~~~ 111 (128)
T 3ul3_B 101 ILL-KNKTMLAR 111 (128)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCEEEEE
Confidence 999 78988764
No 56
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.95 E-value=5.7e-10 Score=103.59 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=68.8
Q ss_pred ccCccchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 121 v~W~~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
|.....+++++..|++++||++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 86 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPV-F--AEYAKKFP-GAVFLKVDVDELKEVAEKY--------N 86 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHH-H--HHHHHHCT-TBCCEECCTTTSGGGHHHH--------T
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHH-H--HHHHHHCC-CCEEEEEeccchHHHHHHc--------C
Confidence 445455688999999999999999999999999999863 2 23444443 6888899999888887777 7
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
+.++|+++|+ ++|+++..
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 8899998887 89988754
No 57
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.95 E-value=9.1e-10 Score=98.35 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.+.++.+++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| +..++|+++
T Consensus 9 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 77 (109)
T 2yzu_A 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPI-L--EEIAKEYEGKLLVAKLDVDENPKTAMRY--------RVMSIPTVI 77 (109)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHhhCceEEEEEECCCCHhHHHhC--------CCCcCCEEE
Confidence 3445566789999999999999999999874 3 5677777767999999999888776665 888999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ ++|+++..
T Consensus 78 ~~-~~g~~~~~ 87 (109)
T 2yzu_A 78 LF-KDGQPVEV 87 (109)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCcEeee
Confidence 99 89998753
No 58
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.95 E-value=1.1e-09 Score=97.79 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=63.2
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|
T Consensus 17 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 84 (107)
T 2i4a_A 17 LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNPETPNAY--------QVRSIPTLMLV-RDG 84 (107)
T ss_dssp TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCCHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCHHHHHhc--------CCCccCEEEEE-eCC
Confidence 57899999999999999999998753 5777777778999999999888877666 88899999999 899
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 85 ~~~~~ 89 (107)
T 2i4a_A 85 KVIDK 89 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 59
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.94 E-value=8.9e-10 Score=108.04 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=59.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
+++|||+|+|+|+||+.|+.|.. +| .++++.+....+.+|||+|+.|++.+.| ++.+.||++|+- +|+
T Consensus 39 ~~~k~VVVdF~A~WCgPCk~m~P-vl--eelA~e~~~~v~f~kVDVDe~~e~a~~y--------~V~siPT~~fFk-~G~ 106 (160)
T 2av4_A 39 EDERLVCIRFGHDYDPDCMKMDE-LL--YKVADDIKNFCVIYLVDITEVPDFNTMY--------ELYDPVSVMFFY-RNK 106 (160)
T ss_dssp CSSSEEEEEEECTTSHHHHHHHH-HH--HHHHHHHTTTEEEEEEETTTCCTTTTTT--------TCCSSEEEEEEE-TTE
T ss_pred cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc--------CCCCCCEEEEEE-CCE
Confidence 57899999999999999999986 44 4577777556889999999999998877 888999998774 666
Q ss_pred ee
Q 003115 216 PL 217 (846)
Q Consensus 216 ~~ 217 (846)
.+
T Consensus 107 ~v 108 (160)
T 2av4_A 107 HM 108 (160)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 60
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.94 E-value=2.2e-10 Score=107.20 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccC---C--------HHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFE---D--------EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~---d--------~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~ 201 (846)
...+++|||+|.|+++||++|..|+.++|. . .++++.+..++..++||.++.+++.+.| ++
T Consensus 16 ~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 87 (123)
T 1oaz_A 16 DVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY--------GI 87 (123)
T ss_dssp HTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGG--------TC
T ss_pred HHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHc--------CC
Confidence 346789999999999999955555444443 1 2345555557999999999998887766 88
Q ss_pred CCCCcEEEECCCCceecc
Q 003115 202 GGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 202 ~G~P~~v~l~pdg~~~~~ 219 (846)
.|+|+++|+ ++|+++..
T Consensus 88 ~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 88 RGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp CBSSEEEEE-ESSSEEEE
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 899999999 99998753
No 61
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.8e-09 Score=97.90 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=56.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
..+||++|.|+++||++|+.|... + .++++.+ +.++..++||.++.+++.+.| ++.++|+++|+ .+|
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 86 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQV-F--EAISNEPSNSNVSFLSIDADENSEISELF--------EISAVPYFIII-HKG 86 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHH-H--HHHHHCGGGTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHhcCCCCEEEEEEecccCHHHHHHc--------CCCcccEEEEE-ECC
Confidence 559999999999999999999863 2 3455443 346999999999888777665 88899999988 699
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 87 ~~~~~ 91 (112)
T 3d6i_A 87 TILKE 91 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 62
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.93 E-value=1.3e-09 Score=100.29 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHH-HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAF-AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl-~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.+ +...+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 78 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPE-F--ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 78 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCcCCHHHHHHc--------CCCccce
Confidence 3445 5567889999999999999999999974 3 5677777778999999999888776655 8889999
Q ss_pred EEEECCCCce
Q 003115 207 SVFLSPDLKP 216 (846)
Q Consensus 207 ~v~l~pdg~~ 216 (846)
++|++++|+.
T Consensus 79 ~~~~~~~~~~ 88 (122)
T 3aps_A 79 VKLYQYERAK 88 (122)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEeCCCcc
Confidence 9999988774
No 63
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.93 E-value=3.3e-09 Score=100.96 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=67.6
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.+. ...+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 13 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 81 (140)
T 3hz4_A 13 DMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATNPWTAEKY--------GVQGTPT 81 (140)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTCHHHHHHH--------TCCEESE
T ss_pred hHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcCHhHHHHC--------CCCcCCE
Confidence 44555 6778899999999999999999999744 7788888778999999999998887766 8899999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ .+|+++..
T Consensus 82 ~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 82 FKFF-CHGRPVWE 93 (140)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 8888 78988753
No 64
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.93 E-value=1.4e-09 Score=100.64 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.+. ..++++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+
T Consensus 12 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt 79 (118)
T 2f51_A 12 HEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKNGNAADAY--------GVSSIPA 79 (118)
T ss_dssp HHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCCHHHHHhc--------CCCCCCE
Confidence 44554 5667899999999999999999998743 5666666 68999999999888877666 8889999
Q ss_pred EEEECC---CCceecc
Q 003115 207 SVFLSP---DLKPLMG 219 (846)
Q Consensus 207 ~v~l~p---dg~~~~~ 219 (846)
++|++. +|+++..
T Consensus 80 ~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 80 LFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 999977 4777754
No 65
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.93 E-value=1.6e-09 Score=96.47 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=61.5
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
..+.+||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| +..++|+++++ ++
T Consensus 14 ~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 81 (105)
T 1fb6_A 14 VLESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEAPGIATQY--------NIRSIPTVLFF-KN 81 (105)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred HhcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcchHHHHHhC--------CCCcccEEEEE-eC
Confidence 345699999999999999999998743 5677777767999999999888776665 78899998877 79
Q ss_pred Cceecc
Q 003115 214 LKPLMG 219 (846)
Q Consensus 214 g~~~~~ 219 (846)
|+++..
T Consensus 82 g~~~~~ 87 (105)
T 1fb6_A 82 GERKES 87 (105)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 998764
No 66
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.92 E-value=1.5e-09 Score=98.32 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=62.0
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
+...+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.|+|+++|+
T Consensus 17 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~- 84 (112)
T 1t00_A 17 QDVLKNDKPVLVDFWAAWCGPCRQIAPS-L--EAIAAEYGDKIEIVKLNIDENPGTAAKY--------GVMSIPTLNVY- 84 (112)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred HHHhhCCCeEEEEEECCCCHhHHhcCHH-H--HHHHHHhcCCeEEEEEEcCCCHHHHHhC--------CCCcccEEEEE-
Confidence 3445679999999999999999999864 3 4577777667999999999888777665 88899998887
Q ss_pred CCCceecc
Q 003115 212 PDLKPLMG 219 (846)
Q Consensus 212 pdg~~~~~ 219 (846)
++|+++..
T Consensus 85 ~~G~~~~~ 92 (112)
T 1t00_A 85 QGGEVAKT 92 (112)
T ss_dssp ETTEEEEE
T ss_pred eCCEEEEE
Confidence 79998754
No 67
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.92 E-value=2.3e-09 Score=96.53 Aligned_cols=78 Identities=9% Similarity=0.035 Sum_probs=61.1
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+++.+.. +++||++|.|+++||++|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+
T Consensus 12 ~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 77 (107)
T 1gh2_A 12 FQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQCQGTAATN--------NISATPT 77 (107)
T ss_dssp HHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSE
T ss_pred HHHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECccCHHHHHhc--------CCCcccE
Confidence 3444433 5799999999999999999998633 3455555 47999999999888877665 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ .+|+.+..
T Consensus 78 ~~~~-~~G~~~~~ 89 (107)
T 1gh2_A 78 FQFF-RNKVRIDQ 89 (107)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCeEEEE
Confidence 9988 78988753
No 68
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=1.3e-09 Score=102.81 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.+.++++.+++|+|+|.|+++||++|+.|.... .++++.+... ++.++||.++.+++.+.| ++.++
T Consensus 24 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~ 92 (140)
T 2dj1_A 24 DGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSASMLASKF--------DVSGY 92 (140)
T ss_dssp TTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTCHHHHHHT--------TCCSS
T ss_pred hHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcccHHHHHHC--------CCCcc
Confidence 345556667799999999999999999998743 3566666654 999999999887776655 78899
Q ss_pred CcEEEECCCCcee
Q 003115 205 PLSVFLSPDLKPL 217 (846)
Q Consensus 205 P~~v~l~pdg~~~ 217 (846)
|+++|+ .+|++.
T Consensus 93 Pt~~~~-~~G~~~ 104 (140)
T 2dj1_A 93 PTIKIL-KKGQAV 104 (140)
T ss_dssp SEEEEE-ETTEEE
T ss_pred CeEEEE-ECCcEE
Confidence 999999 788843
No 69
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.92 E-value=2.3e-09 Score=95.48 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=57.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
++||++|.|+++||+.|+.|.... .++++.+. ++..++||.++.+++.+.| +..++|+++++ .+|+.
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~ 85 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASES--------EVKSMPTFQFF-KKGQK 85 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEE
T ss_pred CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhhHHHHHHc--------CCCcCcEEEEE-ECCeE
Confidence 699999999999999999998633 34555553 5899999999988877666 88999999999 78888
Q ss_pred ecc
Q 003115 217 LMG 219 (846)
Q Consensus 217 ~~~ 219 (846)
+..
T Consensus 86 ~~~ 88 (105)
T 3m9j_A 86 VGE 88 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 70
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.91 E-value=3e-10 Score=102.32 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.++++.+++|||+|.|+++||+.|+.|.... .++++.+ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (105)
T 4euy_A 10 ELATYIEEQQLVLLFIKTENCGVCDVMLRKV---NYVLENY-NYVEKIEILLQDMQEIAGRY--------AVFTGPTVLL 77 (105)
T ss_dssp CCSSSTTCSSEEEEEEEESSCHHHHHHHHHH---HHHHHTC-TTEEEEEEEECCC-----------------CCCCEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCcchHHHHHHH---HHHHHHc-CCceEEEEECCCCHHHHHhc--------CCCCCCEEEE
Confidence 3444557899999999999999999998532 3444444 36899999999999887776 7889999999
Q ss_pred ECCCCceecc
Q 003115 210 LSPDLKPLMG 219 (846)
Q Consensus 210 l~pdg~~~~~ 219 (846)
+. +|+++..
T Consensus 78 ~~-~G~~~~~ 86 (105)
T 4euy_A 78 FY-NGKEILR 86 (105)
T ss_dssp EE-TTEEEEE
T ss_pred Ee-CCeEEEE
Confidence 95 8988764
No 71
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.91 E-value=1.2e-09 Score=97.35 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++.+. ++||++|.|+++||++|+.|.... .++++.++..+..++||.++.+++.+.| ++.++|+++
T Consensus 11 ~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 78 (106)
T 3die_A 11 ADFDSKV-ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDENPSTAAKY--------EVMSIPTLI 78 (106)
T ss_dssp TTHHHHS-CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSBSEEE
T ss_pred HHHHHHh-cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcCHHHHHhC--------CCcccCEEE
Confidence 3444444 899999999999999999998744 6777777767999999999988877666 889999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+. +|+++..
T Consensus 79 ~~~-~G~~~~~ 88 (106)
T 3die_A 79 VFK-DGQPVDK 88 (106)
T ss_dssp EEE-TTEEEEE
T ss_pred EEe-CCeEEEE
Confidence 995 8988764
No 72
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.90 E-value=1.8e-09 Score=104.65 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=62.5
Q ss_pred HHHHHHHH--hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak--~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.+.++.+. +++|||+|+|+++||+.|+.|.... .++++.+++.+..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~P 79 (149)
T 3gix_A 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQTAVYTQYF--------DISYIP 79 (149)
T ss_dssp HHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTTCCHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCcCHHHHHHc--------CCCccC
Confidence 34555554 5699999999999999999998633 2455556556999999999999988776 788999
Q ss_pred cEEEECCCCcee
Q 003115 206 LSVFLSPDLKPL 217 (846)
Q Consensus 206 ~~v~l~pdg~~~ 217 (846)
+++ +..+|+++
T Consensus 80 t~~-~~~~G~~v 90 (149)
T 3gix_A 80 STV-FFFNGQHM 90 (149)
T ss_dssp EEE-EEETTEEE
T ss_pred eEE-EEECCeEE
Confidence 999 66789888
No 73
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3.5e-09 Score=98.61 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh----cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln----~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
..+.+|+++|.|+++||++|+.|.... .++++.++ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 21 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 89 (133)
T 1x5d_A 21 VLDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVNQVLASRY--------GIRGFPTIKI 89 (133)
T ss_dssp TTTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTCCHHHHHH--------TCCSSSEEEE
T ss_pred HhcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCCHHHHHhC--------CCCeeCeEEE
Confidence 356789999999999999999999744 46777776 67999999999988887776 7889999999
Q ss_pred ECCCCceec
Q 003115 210 LSPDLKPLM 218 (846)
Q Consensus 210 l~pdg~~~~ 218 (846)
+++ |+.+.
T Consensus 90 ~~~-g~~~~ 97 (133)
T 1x5d_A 90 FQK-GESPV 97 (133)
T ss_dssp EET-TEEEE
T ss_pred EeC-CCceE
Confidence 998 77554
No 74
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.90 E-value=1.8e-09 Score=100.13 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.++++.+++|+++|.|+++||++|+.|.... .++++.+... +..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~~~~~~~~--------~v~~~Pt 91 (121)
T 2j23_A 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQSQIAQEV--------GIRAMPT 91 (121)
T ss_dssp HHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTCHHHHHHH--------TCCSSSE
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCCHHHHHHc--------CCCcccE
Confidence 566777778999999999999999999998643 3455555433 999999999888877766 7889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ ++|+++..
T Consensus 92 ~~~~-~~G~~~~~ 103 (121)
T 2j23_A 92 FVFF-KNGQKIDT 103 (121)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCeEEee
Confidence 9988 58988754
No 75
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.90 E-value=1.5e-09 Score=99.93 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=64.2
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
..+.++.+.+++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 19 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~-~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 86 (114)
T 2oe3_A 19 NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPH-L--TKLIQAYP-DVRFVKCDVDESPDIAKEC--------EVTAMPT 86 (114)
T ss_dssp SHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSBSE
T ss_pred CHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CCEEEEEECCCCHHHHHHC--------CCCcccE
Confidence 367788888899999999999999999999864 3 34555554 3889999999888777665 8889999
Q ss_pred EEEECCCCceec
Q 003115 207 SVFLSPDLKPLM 218 (846)
Q Consensus 207 ~v~l~pdg~~~~ 218 (846)
++|+ ++|+++.
T Consensus 87 ~~~~-~~G~~~~ 97 (114)
T 2oe3_A 87 FVLG-KDGQLIG 97 (114)
T ss_dssp EEEE-ETTEEEE
T ss_pred EEEE-eCCeEEE
Confidence 8887 8999875
No 76
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.89 E-value=1.5e-09 Score=102.07 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+.+|+++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 37 ~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G 104 (128)
T 2o8v_B 37 LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 104 (128)
T ss_dssp TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCCTTSGGG--------TCCSSSEEEEE-ETT
T ss_pred HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-eCC
Confidence 57799999999999999999998743 5677777667999999999888877666 78899999999 899
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 105 ~~~~~ 109 (128)
T 2o8v_B 105 EVAAT 109 (128)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98753
No 77
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.89 E-value=3.4e-09 Score=103.28 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++.+..+.+.+||++|+|+++||+.|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 54 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~ 122 (155)
T 2ppt_A 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQ-F--QAAAATLAGQVRLAKIDTQAHPAVAGRH--------RIQGIPAF 122 (155)
T ss_dssp HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTSTHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHccCCEEEEEEeCCccHHHHHHc--------CCCcCCEE
Confidence 56677776889999999999999999999874 4 4778888767999999999998887766 88999999
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+|+ .+|+++..
T Consensus 123 ~~~-~~G~~~~~ 133 (155)
T 2ppt_A 123 ILF-HKGRELAR 133 (155)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 999 79998753
No 78
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.89 E-value=3.1e-09 Score=94.65 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=59.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
++||++|.|+++||++|+.|... | .++++.++.++..++||.++.+++.+.| +..++|+++++ ++|++
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 86 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPK-L--VELSTQFADNVVVLKVDVDECEDIAMEY--------NISSMPTFVFL-KNGVK 86 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred CCCEEEEEEECCcCHHHHHhhHH-H--HHHHHHhCCCeEEEEEeccchHHHHHHc--------CCCcccEEEEE-cCCcE
Confidence 79999999999999999999874 3 4567777668999999999888776665 88899998777 78988
Q ss_pred ecc
Q 003115 217 LMG 219 (846)
Q Consensus 217 ~~~ 219 (846)
+..
T Consensus 87 ~~~ 89 (106)
T 1xwb_A 87 VEE 89 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 79
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.89 E-value=3.1e-09 Score=101.70 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.++.+.+++|||+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|++
T Consensus 45 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 113 (148)
T 3p2a_A 45 AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEPALSTRF--------RIRSIPTI 113 (148)
T ss_dssp TTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCHHHHHHC--------CCCccCEE
Confidence 456666668999999999999999999998643 5667777678999999999998887766 88999999
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+|+ .+|+.+..
T Consensus 114 ~~~-~~G~~~~~ 124 (148)
T 3p2a_A 114 MLY-RNGKMIDM 124 (148)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCeEEEE
Confidence 998 58988753
No 80
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.88 E-value=3.7e-09 Score=99.16 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++++.+++||++|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+++
T Consensus 28 ~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~ 95 (125)
T 1r26_A 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERP-M--EKIAYEF-PTVKFAKVDADNNSEIVSKC--------RVLQLPTFI 95 (125)
T ss_dssp HHHHHHHHSSSCEEEEEECTTCHHHHHTHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCcccEEE
Confidence 4455555789999999999999999999874 3 3455555 46999999999988877666 888999988
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ ++|+++..
T Consensus 96 i~-~~G~~~~~ 105 (125)
T 1r26_A 96 IA-RSGKMLGH 105 (125)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 77 89988753
No 81
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.88 E-value=2e-09 Score=95.01 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++++.+++|+++|.|+++||++|+.|... + .++++.+.. +..++||.++.+++.+.| +..++|+++
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 74 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPI-I--EELAEDYPQ-VGFGKLNSDENPDIAARY--------GVMSLPTVI 74 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHCTT-SEEEEEETTTCHHHHHHT--------TCCSSCEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhHH-H--HHHHHHcCC-ceEEEEECCCCHHHHHhC--------CccccCEEE
Confidence 3455555779999999999999999999863 3 346666654 899999999888776655 788999999
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ ++|+++..
T Consensus 75 ~~-~~g~~~~~ 84 (104)
T 2e0q_A 75 FF-KDGEPVDE 84 (104)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-ECCeEhhh
Confidence 99 89998753
No 82
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.87 E-value=3.4e-09 Score=102.50 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHHhc--CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak~e--~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.+.++.+.++ +|+++|.|+++||++|+.|.... .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 20 ~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 87 (153)
T 2wz9_A 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVM---AELAKEL-PQVSFVKLEAEGVPEVSEKY--------EISSVP 87 (153)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHc-CCeEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 4455555555 99999999999999999998632 3444443 47999999999988877665 889999
Q ss_pred cEEEECCCCceecc
Q 003115 206 LSVFLSPDLKPLMG 219 (846)
Q Consensus 206 ~~v~l~pdg~~~~~ 219 (846)
+++|++ +|+++..
T Consensus 88 t~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 88 TFLFFK-NSQKIDR 100 (153)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEEE
Confidence 999999 9998753
No 83
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.87 E-value=3.3e-09 Score=95.93 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=62.3
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 22 ~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 89 (115)
T 1thx_A 22 LKAEQPVLVYFWASWCGPCQLMSPL-I--NLAANTYSDRLKVVKLEIDPNPTTVKKY--------KVEGVPALRLV-KGE 89 (115)
T ss_dssp TTCSSCEEEEEECTTCTTHHHHHHH-H--HHHHHHTTTTCEEEEEESTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred hcCCceEEEEEECCCCHHHHHhHHH-H--HHHHHHhCCcEEEEEEEcCCCHHHHHHc--------CCCceeEEEEE-cCC
Confidence 5789999999999999999999874 3 5677777767999999999888776665 88899999999 899
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 90 ~~~~~ 94 (115)
T 1thx_A 90 QILDS 94 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 84
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.85 E-value=1.7e-09 Score=99.03 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
.+.+.+++||++|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+++|+
T Consensus 23 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~ 91 (121)
T 2i1u_A 23 ATDVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTNPETARNF--------QVVSIPTLILF 91 (121)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEEE
Confidence 345567899999999999999999999753 5677777667999999999888776655 88899999888
Q ss_pred CCCCceecc
Q 003115 211 SPDLKPLMG 219 (846)
Q Consensus 211 ~pdg~~~~~ 219 (846)
++|+++..
T Consensus 92 -~~g~~~~~ 99 (121)
T 2i1u_A 92 -KDGQPVKR 99 (121)
T ss_dssp -ETTEEEEE
T ss_pred -ECCEEEEE
Confidence 58988754
No 85
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.85 E-value=6.7e-09 Score=92.14 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=60.5
Q ss_pred HHHHHHHh--cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+.++++.+ ++||++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +..++|+
T Consensus 8 ~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 75 (104)
T 2vim_A 8 ADLEKLINENKGRLIVVDFFAQWCGPCRNIAPK-V--EALAKEIP-EVEFAKVDVDQNEEAAAKY--------SVTAMPT 75 (104)
T ss_dssp HHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHCC-CCEEEEEeccCCHHHHHHc--------CCccccE
Confidence 44555444 79999999999999999999863 3 34555543 7899999999888776665 7889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
.+++. +|+++..
T Consensus 76 ~~~~~-~g~~~~~ 87 (104)
T 2vim_A 76 FVFIK-DGKEVDR 87 (104)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEe-CCcEEEE
Confidence 88875 8988754
No 86
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.84 E-value=5.9e-09 Score=95.45 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.++. ..+||++|.|+++||++|+.|.. .+.++.++ ++..++||.++.+++.+.| ++.++|+
T Consensus 25 ~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 88 (117)
T 2xc2_A 25 ESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDKLEETARKY--------NISAMPT 88 (117)
T ss_dssp HHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTTSHHHHHHT--------TCCSSSE
T ss_pred HHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCccHHHHHHc--------CCCccce
Confidence 444432 37999999999999999999985 33333333 6889999999888777665 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ ++|+++..
T Consensus 89 ~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 89 FIAI-KNGEKVGD 100 (117)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 8877 78988753
No 87
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.81 E-value=9.6e-09 Score=98.67 Aligned_cols=79 Identities=22% Similarity=0.181 Sum_probs=62.6
Q ss_pred HHHHHHHH-h-cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 128 EEAFAEAR-K-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 128 ~eAl~~Ak-~-e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.+.++.+- + ++|||+|+|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~P 79 (142)
T 1qgv_A 11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVPDFNKMY--------ELYDPC 79 (142)
T ss_dssp HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCCTTTTSS--------CSCSSC
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCHHHHHHc--------CCCCCC
Confidence 34454432 2 699999999999999999998743 4677777667999999999999877665 888999
Q ss_pred cEEEECCCCceec
Q 003115 206 LSVFLSPDLKPLM 218 (846)
Q Consensus 206 ~~v~l~pdg~~~~ 218 (846)
+++|+ .+|+++.
T Consensus 80 t~~~~-~~G~~v~ 91 (142)
T 1qgv_A 80 TVMFF-FRNKHIM 91 (142)
T ss_dssp EEEEE-ETTEEEE
T ss_pred EEEEE-ECCcEEE
Confidence 99998 4788774
No 88
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.81 E-value=2.1e-09 Score=97.71 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
+.++++.+++|+++|.|+++||++|+.|.... .++++.+. .+++.++||.++.+++.+.| ++.++|
T Consensus 15 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P 83 (120)
T 1mek_A 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEESDLAQQY--------GVRGYP 83 (120)
T ss_dssp TTHHHHHHHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCCSSHHHH--------TCCSSS
T ss_pred hhHHHHHccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCHHHHHHC--------CCCccc
Confidence 44555666799999999999999999998643 24555554 36889999999888887777 888999
Q ss_pred cEEEECCCCcee
Q 003115 206 LSVFLSPDLKPL 217 (846)
Q Consensus 206 ~~v~l~pdg~~~ 217 (846)
+++|+ .+|+.+
T Consensus 84 t~~~~-~~g~~~ 94 (120)
T 1mek_A 84 TIKFF-RNGDTA 94 (120)
T ss_dssp EEEEE-ESSCSS
T ss_pred EEEEE-eCCCcC
Confidence 99999 678765
No 89
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.80 E-value=5.8e-09 Score=97.44 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=57.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
+++|||+|.|+++||++|+.|... | .++++.+. .+++.++||.++.+.+.+.| ++.++|+++|++++
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g 91 (133)
T 2dj3_A 23 DPKKDVLIEFYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATANDITNDQY--------KVEGFPTIYFAPSG 91 (133)
T ss_dssp CTTSEEEEEECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSCCCCSSC--------CCSSSSEEEEECTT
T ss_pred cCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCHHHHhhc--------CCCcCCEEEEEeCC
Confidence 358999999999999999999974 4 45777776 46999999999887765544 78899999999887
Q ss_pred Cc
Q 003115 214 LK 215 (846)
Q Consensus 214 g~ 215 (846)
++
T Consensus 92 ~~ 93 (133)
T 2dj3_A 92 DK 93 (133)
T ss_dssp CT
T ss_pred Cc
Confidence 65
No 90
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.79 E-value=3.5e-09 Score=100.19 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.++ ...+|||+|.|+++||++|+.|.. .+.++.++ +++.++||.++.+++.+.| ++.|+|+
T Consensus 32 ~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 95 (133)
T 3cxg_A 32 NQVFS--STQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDIHPKLNDQH--------NIKALPT 95 (133)
T ss_dssp HHHHT--C-CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccchHHHHHhc--------CCCCCCE
Confidence 45543 334899999999999999999864 23333322 4788999999888877666 8889999
Q ss_pred EEEE-CCCCc--eec
Q 003115 207 SVFL-SPDLK--PLM 218 (846)
Q Consensus 207 ~v~l-~pdg~--~~~ 218 (846)
++|+ +++|+ ++.
T Consensus 96 ~~~~~~~~g~g~~~~ 110 (133)
T 3cxg_A 96 FEFYFNLNNEWVLVH 110 (133)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEecCCCeEEEE
Confidence 9999 56666 554
No 91
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.79 E-value=1.2e-08 Score=92.27 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=55.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
.+||++|.|+++||++|+.|... + .++++.+. ++..++||.+ +.+++.+.| ++.|+|+ +++.++|+
T Consensus 23 ~~~~vlv~f~a~wC~~C~~~~~~-l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~~--------~v~~~Pt-~~~~~~G~ 89 (111)
T 2pu9_C 23 GDKPVVLDMFTQWCGPSKAMAPK-Y--EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPT-FKILKENS 89 (111)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSBSSE-EEEESSSS
T ss_pred CCCEEEEEEECCcCHhHHHHCHH-H--HHHHHHCC-CeEEEEEecCcchHHHHHHc--------CCCeeeE-EEEEeCCc
Confidence 58999999999999999999864 3 34555553 5889999997 677776666 8899999 55569999
Q ss_pred eecc
Q 003115 216 PLMG 219 (846)
Q Consensus 216 ~~~~ 219 (846)
++..
T Consensus 90 ~~~~ 93 (111)
T 2pu9_C 90 VVGE 93 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 92
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.79 E-value=1.3e-08 Score=103.69 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=68.1
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
..+.+..+...+|+++|.|+++||++|+.|.... .++++.++.+++.++||.++.+++.+.| ++.|+|+
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 171 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPS 171 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCccHHHHHHc--------CCCcCCe
Confidence 3567777778899999999999999999998743 5677778777999999999888776655 8899999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+ ++|+++..
T Consensus 172 ~~~~-~~G~~~~~ 183 (210)
T 3apq_A 172 LFIF-RSGMAAVK 183 (210)
T ss_dssp EEEE-CTTSCCEE
T ss_pred EEEE-ECCCceeE
Confidence 9999 89987543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.1e-08 Score=108.47 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=61.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
..+|||+|+|+++||++|+.|... | .++++.++.+++.++||.++.|++.+.| ++.|+|+++|+ .+|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 91 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPI-L--ESLAAQYNGQFILAKLDCDAEQMIAAQF--------GLRAIPTVYLF-QNGQ 91 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHH-H--HHHHHHHTSSSEEEEEETTTCHHHHHTT--------TCCSSSEEEEE-ETTE
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEEeCccCHHHHHHc--------CCCCCCeEEEE-ECCE
Confidence 459999999999999999999864 3 5677777777999999999998877666 88999999999 7898
Q ss_pred eecc
Q 003115 216 PLMG 219 (846)
Q Consensus 216 ~~~~ 219 (846)
++..
T Consensus 92 ~~~~ 95 (287)
T 3qou_A 92 PVDG 95 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 94
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.75 E-value=4.6e-09 Score=95.62 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=59.7
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
.+..++|+++|.|+++||++|+.|... + .++++.. .++..++||.++.+++.+.| ++.++|+++|+ .
T Consensus 14 ~~~~~~~~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~ 80 (110)
T 2l6c_A 14 AHFEGLSDAIVFFHKNLCPHCKNMEKV-L--DKFGARA-PQVAISSVDSEARPELMKEL--------GFERVPTLVFI-R 80 (110)
T ss_dssp HHHTTCSEEEEEEECSSCSTHHHHHHH-H--HHHHTTC-TTSCEEEEEGGGCHHHHHHT--------TCCSSCEEEEE-E
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHH-H--HHHHHHC-CCcEEEEEcCcCCHHHHHHc--------CCcccCEEEEE-E
Confidence 455678999999999999999999752 2 2222222 25778889988888776665 88899999999 8
Q ss_pred CCceeccc-cccCC
Q 003115 213 DLKPLMGG-TYFPP 225 (846)
Q Consensus 213 dg~~~~~~-tY~p~ 225 (846)
+|+++... ++.++
T Consensus 81 ~G~~v~~~~G~~~~ 94 (110)
T 2l6c_A 81 DGKVAKVFSGIMNP 94 (110)
T ss_dssp SSSEEEEEESCCCH
T ss_pred CCEEEEEEcCCCCH
Confidence 99988642 45553
No 95
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=1.2e-08 Score=105.03 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=65.5
Q ss_pred HHHHHH-HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.|.. ..+++|||+|.|+++||+.|+.|.... .++++.++.++..++||.++.+++.+.| ++.++|+
T Consensus 19 ~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 87 (222)
T 3dxb_A 19 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPT 87 (222)
T ss_dssp TTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCTTTGGGG--------TCCSBSE
T ss_pred HHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCHHHHHHc--------CCCcCCE
Confidence 444544 367899999999999999999998743 6677777777999999999999887666 8899999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
++|+. +|+++..
T Consensus 88 ~~~~~-~G~~~~~ 99 (222)
T 3dxb_A 88 LLLFK-NGEVAAT 99 (222)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCeEEEE
Confidence 99985 8887753
No 96
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.73 E-value=4.4e-09 Score=96.63 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=57.6
Q ss_pred cchHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 125 AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 125 ~~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.-..+.++.+.+++||++|.|+++||++|+.|.... .++++..+..++.| |.+...+.+. .....+. .++.|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~--~~~~~~~~~~-~~~~~~~-~~i~~~ 88 (118)
T 1zma_A 16 VTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTL---SGVVAETKAHIYFI--NSEEPSQLND-LQAFRSR-YGIPTV 88 (118)
T ss_dssp ECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCCEEE--ETTCGGGHHH-HHHHHHH-HTCCSS
T ss_pred cCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHH---HHHHHhcCCeEEEE--ECCCcCcHHH-HHHHHHH-cCCCCC
Confidence 334567777788899999999999999999998632 24455444345554 4444333332 1122222 388999
Q ss_pred CcEEEECCCCceecc
Q 003115 205 PLSVFLSPDLKPLMG 219 (846)
Q Consensus 205 P~~v~l~pdg~~~~~ 219 (846)
|+++|+. +|+++..
T Consensus 89 Pt~~~~~-~G~~~~~ 102 (118)
T 1zma_A 89 PGFVHIT-DGQINVR 102 (118)
T ss_dssp CEEEEEE-TTEEEEE
T ss_pred CeEEEEE-CCEEEEE
Confidence 9999994 8887643
No 97
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.72 E-value=2.6e-08 Score=91.97 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=55.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.++||++|.|+++||++|+.|.... .++++... ++..++||.+ +.+++.+.| ++.|+|+++|+ ++|
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 101 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKY---EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTFKIL-KEN 101 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHCC-CCEEEEEecCcchHHHHHHc--------CCCeeeEEEEE-eCC
Confidence 4789999999999999999998642 34555443 5888999987 567776666 88999996554 889
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
+++..
T Consensus 102 ~~~~~ 106 (124)
T 1faa_A 102 SVVGE 106 (124)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88753
No 98
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.70 E-value=3.5e-08 Score=88.55 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=54.2
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
+|+++|.|+++||+.|+.|.. .+.++..+ ++..++||.++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~- 85 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAP------TWEELSKKEFPGLAGVKIAEVDCTAERNICSKY--------SVRGYPTLLLF- 85 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHH------HHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred CCcEEEEEECCCChhHHHhhH------HHHHHHHHhhccCCceEEEEEeccccHhHHHhc--------CCCcccEEEEE-
Confidence 899999999999999999984 44444432 5888999999888877666 88899998888
Q ss_pred CCCceecc
Q 003115 212 PDLKPLMG 219 (846)
Q Consensus 212 pdg~~~~~ 219 (846)
.+|+.+..
T Consensus 86 ~~g~~~~~ 93 (111)
T 3uvt_A 86 RGGKKVSE 93 (111)
T ss_dssp ETTEEEEE
T ss_pred eCCcEEEe
Confidence 78887653
No 99
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.69 E-value=2e-08 Score=94.51 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=67.1
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH-----------------HHH
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY-----------------VQA 197 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~-----------------~~~ 197 (846)
-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+. +..
T Consensus 29 ~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (148)
T 3hcz_A 29 VQAKYTILFFWDSQCGHCQQETPKL---YDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKI 105 (148)
T ss_dssp CCCSEEEEEEECGGGCTTCSHHHHH---HHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHH
T ss_pred cCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHH
Confidence 4689999999999999999987522 224455544 4888888887666533333221 112
Q ss_pred hcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHH
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAW 245 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~ 245 (846)
..+..++|+++|+|++|+++.... |...+.++++.+.+.-
T Consensus 106 ~~~i~~~P~~~lid~~G~i~~~~~--------g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 106 TYDIYATPVLYVLDKNKVIIAKRI--------GYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHCCCSSCEEEEECTTCBEEEESC--------CGGGHHHHHHHHHHHH
T ss_pred hcCcCCCCEEEEECCCCcEEEecC--------CHHHHHHHHHHHHHHh
Confidence 237889999999999999987531 1235777777776554
No 100
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.14 E-value=2e-09 Score=95.44 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=60.8
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~p 212 (846)
.+.+.+||++|.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| +..++|+++++ +
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~ 81 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPI-I--EELAKEYEGKVKVVKVNVDENPNTAAQY--------GIRSIPTLLLF-K 81 (106)
Confidence 445779999999999999999999863 3 4566666667888899998888776666 77899999999 8
Q ss_pred CCceecc
Q 003115 213 DLKPLMG 219 (846)
Q Consensus 213 dg~~~~~ 219 (846)
+|+++..
T Consensus 82 ~g~~~~~ 88 (106)
T 2yj7_A 82 NGQVVDR 88 (106)
Confidence 9988754
No 101
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.68 E-value=1.5e-08 Score=97.31 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=69.6
Q ss_pred CCccCccchHHHHHHH-HhcCCCEEEEEeccCC--hhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHH
Q 003115 119 NPVDWFAWGEEAFAEA-RKRDVPIFLSIGYSTC--HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV 195 (846)
Q Consensus 119 ~~v~W~~~~~eAl~~A-k~e~KpI~l~~g~~wC--~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~ 195 (846)
+.-.|..-.++-|+.- .+.++||+|+|+++|| +.|+.|.- ++ +++++.+...+..+|||.++.|++...|
T Consensus 13 ~~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaP-vl--eela~e~~~~v~~~KVdvDe~~~la~~y---- 85 (137)
T 2qsi_A 13 RPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAV-VL--PELINAFPGRLVAAEVAAEAERGLMARF---- 85 (137)
T ss_dssp ----CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHH-HH--HHHHHTSTTTEEEEEECGGGHHHHHHHH----
T ss_pred HhcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHh-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc----
Confidence 3344544333444433 2444599999999999 99999996 33 5677767667899999999999999888
Q ss_pred HHhcCCCCCCcEEEECCCCceecc-ccccCC
Q 003115 196 QALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 225 (846)
Q Consensus 196 ~~~~g~~G~P~~v~l~pdg~~~~~-~tY~p~ 225 (846)
|+.++||.+|+ .||+++.. .+..|+
T Consensus 86 ----gV~siPTlilF-kdG~~v~~~vG~~~k 111 (137)
T 2qsi_A 86 ----GVAVCPSLAVV-QPERTLGVIAKIQDW 111 (137)
T ss_dssp ----TCCSSSEEEEE-ECCEEEEEEESCCCH
T ss_pred ----CCccCCEEEEE-ECCEEEEEEeCCCCH
Confidence 89999999999 68898875 345553
No 102
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.68 E-value=3.4e-08 Score=91.99 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-----hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-----NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-----n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l 210 (846)
+.+|+|+|.|+++||+.|+.|.. .|+ ++++.+ +.+++.++||.++.+++.+.| ++.|+|+++|+
T Consensus 31 ~~~~~vlv~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~ 99 (127)
T 3h79_A 31 DPEKDVFVLYYVPWSRHSVAAMR-LWD--DLSMSQSQKRNHLTFVAARIDGEKYPDVIERM--------RVSGFPTMRYY 99 (127)
T ss_dssp CTTCEEEEEEECTTCHHHHHHHH-HHH--HHHHHHHTSTTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred CCCCCEEEEEECCccHHHHHHhH-HHH--HHHHHHHhcccCCCeEEEEEEccccHhHHHhc--------CCccCCEEEEE
Confidence 46999999999999999999986 332 333333 246999999999988887766 88999999999
Q ss_pred CCCCce
Q 003115 211 SPDLKP 216 (846)
Q Consensus 211 ~pdg~~ 216 (846)
.++++.
T Consensus 100 ~~g~~~ 105 (127)
T 3h79_A 100 TRIDKQ 105 (127)
T ss_dssp CSSCSS
T ss_pred eCCCCC
Confidence 887653
No 103
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.65 E-value=3.4e-08 Score=93.51 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.+..+..+++.++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 108 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPI-L--EELARDHAGRLKVVKVNVDEHPGLAARY--------GVRSVPTL 108 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHH-H--HHHHHHccCceEEEEEECCCCHHHHHHC--------CCCccCEE
Confidence 45555554344449999999999999999874 3 4677777667999999999888776666 78899999
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+|+ .+|+++..
T Consensus 109 ~~~-~~G~~~~~ 119 (140)
T 1v98_A 109 VLF-RRGAPVAT 119 (140)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCcEEEE
Confidence 998 79998753
No 104
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.65 E-value=1.2e-08 Score=98.37 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=75.0
Q ss_pred ChhhhhccCCCccCccchHHHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCcc
Q 003115 110 SPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPD 186 (846)
Q Consensus 110 SpYL~~ha~~~v~W~~~~~eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~ 186 (846)
||-+++-... .|..-.++-|++--+.++||+|+|+++| |+.|+.|.- ++ +++++.+... +..+|||+++.|+
T Consensus 8 ~pl~~rl~~~--g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaP-vl--eela~e~~g~~v~~~KVdvDe~~~ 82 (140)
T 2qgv_A 8 DALWQRMLAR--GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPV-MI--GELLHEFPDYTWQVAIADLEQSEA 82 (140)
T ss_dssp HHHHHHHHHT--TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHH-HH--HHHHTTCTTSCCEEEECCHHHHHH
T ss_pred ChHHHHHHhc--CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHh-HH--HHHHHHcCCCeEEEEEEECCCCHH
Confidence 4444433333 4544445666665568899999999999 999999986 33 4556555556 8999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccC
Q 003115 187 VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (846)
Q Consensus 187 ~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~-tY~p 224 (846)
+...| |+.++||.+|+ .+|+++... +..|
T Consensus 83 lA~~y--------gV~sIPTlilF-k~G~~v~~~~G~~~ 112 (140)
T 2qgv_A 83 IGDRF--------GAFRFPATLVF-TGGNYRGVLNGIHP 112 (140)
T ss_dssp HHHHH--------TCCSSSEEEEE-ETTEEEEEEESCCC
T ss_pred HHHHc--------CCccCCEEEEE-ECCEEEEEEecCCC
Confidence 99888 89999999988 688888653 4454
No 105
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.3e-08 Score=92.61 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=62.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCC------CCCc
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG------GWPL 206 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~------G~P~ 206 (846)
++.++|||+|.|+++||+.|+.|... | .++++.++. ++..++||.++.+++.+.| ++. ++|+
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~~~~~~~Pt 90 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDCQSFAPI-Y--ADLSLKYNCTGLNFGKVDVGRYTDVSTRY--------KVSTSPLTKQLPT 90 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTTTTTHHH-H--HHHHHHHCSSSCEEEECCTTTCHHHHHHT--------TCCCCSSSSCSSE
T ss_pred hcCCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCCeEEEEEeCccCHHHHHHc--------cCcccCCcCCCCE
Confidence 34556799999999999999999873 3 467777764 7999999999988877665 666 9999
Q ss_pred EEEECCCCceecc-ccccCCC
Q 003115 207 SVFLSPDLKPLMG-GTYFPPE 226 (846)
Q Consensus 207 ~v~l~pdg~~~~~-~tY~p~~ 226 (846)
++|+ .+|+++.. .++.+.+
T Consensus 91 ~~~~-~~G~~~~~~~G~~~~~ 110 (137)
T 2dj0_A 91 LILF-QGGKEAMRRPQIDKKG 110 (137)
T ss_dssp EEEE-SSSSEEEEESCBCSSS
T ss_pred EEEE-ECCEEEEEecCcCchH
Confidence 9999 78988753 3445543
No 106
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.64 E-value=3.1e-08 Score=90.71 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=55.6
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-----CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
..++|+++|.|+++||++|+.|... | .++++.+.. ++..++||.++.+ +. + ++.++|+++|
T Consensus 22 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~-------~---~v~~~Pt~~~ 87 (121)
T 2djj_A 22 LDDTKDVLIEFYAPWCGHCKALAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND-VP-------D---EIQGFPTIKL 87 (121)
T ss_dssp SCTTSCEEEEEECSSCTTHHHHHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC-CS-------S---CCSSSSEEEE
T ss_pred hcCCCCEEEEEECCCCHhHHHhhHH-H--HHHHHHHhhcccCCceEEEEEECcccc-cc-------c---ccCcCCeEEE
Confidence 3578999999999999999999974 4 477777765 7999999998765 21 1 6789999999
Q ss_pred ECCCCc
Q 003115 210 LSPDLK 215 (846)
Q Consensus 210 l~pdg~ 215 (846)
++++|+
T Consensus 88 ~~~~~~ 93 (121)
T 2djj_A 88 YPAGAK 93 (121)
T ss_dssp ECSSCT
T ss_pred EeCcCC
Confidence 999887
No 107
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=4.2e-08 Score=90.92 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=54.5
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+++|.|+++||+.|+.|.... .++++.+.. ++..++||.++.+++.+.| ++.++|+++|+ ++|++.
T Consensus 24 ~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 24 DWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQPGLSGRF--------IINALPTIYHC-KDGEFR 90 (126)
T ss_dssp EEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEE
T ss_pred CEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCHHHHHHc--------CCcccCEEEEE-eCCeEE
Confidence 499999999999999998743 346666654 7999999999888776665 78899999999 889853
No 108
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.60 E-value=5.1e-08 Score=96.69 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=64.8
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
..+|+++|+|+++||+.|+.+.. .+ .++++.. .++..++||+++.|++...|. ..++.++|+++|++++|+
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~~~P-~l--~~l~~~~-~~v~~~~v~~d~~~~~~~~~~-----~~~v~~iPt~i~~~~~G~ 122 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQINLA-AL--DFAQRLQ-PNIELAIISKGRAEDDLRQRL-----ALERIAIPLVLVLDEEFN 122 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHHHHH-HH--HHHHHHC-TTEEEEEECHHHHHHHTTTTT-----TCSSCCSSEEEEECTTCC
T ss_pred hCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHC-CCcEEEEEECCCCHHHHHHHH-----HcCCCCcCeEEEECCCCC
Confidence 35899999999999999999875 22 2344332 367888899887776655442 124789999999999999
Q ss_pred eeccccccCCCCCCCcccHHHHHHHHHHHHH
Q 003115 216 PLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (846)
Q Consensus 216 ~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (846)
++...+..|. ...+.++.....|.
T Consensus 123 ~~~~~g~~p~-------~~~~~i~~~~~~~~ 146 (167)
T 1z6n_A 123 LLGRFVERPQ-------AVLDGGPQALAAYK 146 (167)
T ss_dssp EEEEEESSCH-------HHHHHCHHHHHHHH
T ss_pred EEEEEcCCCH-------HHHHhHHHHHHHHH
Confidence 8754334443 34455555555553
No 109
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.60 E-value=5.3e-08 Score=94.58 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=53.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhcC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~~~~g 200 (846)
..||+|+|.|+++||++|+.+.. .+.++.++++..|.|+.++.++..+.|.+. +....+
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~------~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHH------HHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 46999999999999999999863 455555556666666654333322222110 011137
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
+.++|++++++++|+++..
T Consensus 123 v~~~P~~~lid~~G~i~~~ 141 (168)
T 2b1k_A 123 VYGAPETFLIDGNGIIRYR 141 (168)
T ss_dssp CCSSSEEEEECTTSBEEEE
T ss_pred ccccCEEEEECCCCeEEEE
Confidence 8899999999999999864
No 110
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.60 E-value=1e-07 Score=89.46 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=55.1
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-----ccHHHHHHH-------------
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-----PDVDKVYMT------------- 193 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-----p~~~~~y~~------------- 193 (846)
..+...||+++|.|+++||+.|+.+.... .++.+.+.+.+..|.|+.+.. ++..+.|.+
T Consensus 23 ~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 99 (148)
T 2b5x_A 23 REQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD 99 (148)
T ss_dssp HHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred chhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCc
Confidence 34445789999999999999999987632 345555554466666765431 111111100
Q ss_pred -HHHHhcCCCCCCcEEEECCCCceecc
Q 003115 194 -YVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 194 -~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.+....++.++|+++|+|++|+++..
T Consensus 100 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 100 HALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 01112378899999999999998874
No 111
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.58 E-value=4.5e-08 Score=92.07 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=63.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH--------------HH--Hh
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQ--AL 198 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~--------------~~--~~ 198 (846)
-.||+|+|.|+++||+.|+.+....-+.+++.+.+.+ ++..|.|+.++.++.-+.|.+. .. ..
T Consensus 25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (142)
T 3ewl_A 25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL 104 (142)
T ss_dssp CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence 3689999999999999999998766667888887754 5788888777655543333211 01 13
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.++.++|+++++|++|+++.+
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 105 YDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SCCCSSSEEEEECTTCBEEEC
T ss_pred cCCCCCCeEEEECCCCCEEec
Confidence 478899999999999999874
No 112
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.58 E-value=5.1e-08 Score=89.77 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=54.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC-----CCccHHHHHHH---------------HH
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMT---------------YV 195 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e-----e~p~~~~~y~~---------------~~ 195 (846)
-.||+++|.|+++||+.|+.+.... .++.+..++++..|.|+.+ ..++..+.|.+ .+
T Consensus 20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (138)
T 4evm_A 20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL 96 (138)
T ss_dssp GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence 4689999999999999999987643 4555555567888888421 11111111110 01
Q ss_pred HHhcCCCCCCcEEEECCCCceecc
Q 003115 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 196 ~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
....+..++|+++|+|++|+++..
T Consensus 97 ~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp HHHTTCCSSSEEEEECTTCCEEEE
T ss_pred HHHcCcccCCeEEEECCCCcEEEe
Confidence 112378899999999999998865
No 113
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.57 E-value=6e-08 Score=99.54 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
++.++.+.+++|+|+|.|+++||+.|+.|.... .++++.+... ++.++||.++.+++.+.| ++.|+
T Consensus 22 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~ 90 (241)
T 3idv_A 22 DANFDNFVADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSASVLASRF--------DVSGY 90 (241)
T ss_dssp TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSS
T ss_pred ccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCCHHHHHhc--------CCCcC
Confidence 456777778899999999999999999998733 4556656544 999999999888877666 88999
Q ss_pred CcEEEECCCCceec
Q 003115 205 PLSVFLSPDLKPLM 218 (846)
Q Consensus 205 P~~v~l~pdg~~~~ 218 (846)
|+++|+. +|+++.
T Consensus 91 Pt~~~~~-~g~~~~ 103 (241)
T 3idv_A 91 PTIKILK-KGQAVD 103 (241)
T ss_dssp SEEEEEE-TTEEEE
T ss_pred CEEEEEc-CCCccc
Confidence 9999995 677663
No 114
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.57 E-value=5.1e-08 Score=83.39 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
+++++.|+++||++|+.+... + .++++.+..++..++||.++.+++.+.| |..|+|+++| +|++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRV-V--EEVANEMPDAVEVEYINVMENPQKAMEY--------GIMAVPTIVI---NGDV 66 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHH-H--HHHHHHCSSSEEEEEEESSSSCCTTTST--------TTCCSSEEEE---TTEE
T ss_pred ceEEEEEeCCCCCchHHHHHH-H--HHHHHHcCCceEEEEEECCCCHHHHHHC--------CCcccCEEEE---CCEE
Confidence 578999999999999999863 3 4555666557999999999888877665 7889999998 8887
No 115
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.57 E-value=1.6e-07 Score=90.19 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=58.7
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHH--------------HHhc-
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYV--------------QALY- 199 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~--------------~~~~- 199 (846)
-.||||+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+.. +.+.
T Consensus 32 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3or5_A 32 LKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG 108 (165)
T ss_dssp GTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence 4689999999999999999987643 344555544 48888888877666555553221 1111
Q ss_pred ----CCCCCCcEEEECCCCceecc
Q 003115 200 ----GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 200 ----g~~G~P~~v~l~pdg~~~~~ 219 (846)
+..++|+++|+|++|+++..
T Consensus 109 ~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 109 YIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp TSTTCSCSSSEEEEECTTSBEEEE
T ss_pred hhccCCCCCCeEEEECCCCcEEEE
Confidence 67899999999999999864
No 116
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.56 E-value=8.6e-08 Score=88.84 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH--------------HHHh
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQAL 198 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~--------------~~~~ 198 (846)
.+...|||++|.|+++||+.|+.+... + .++++.+. ++..|.|+.++.++..+.|.+. ....
T Consensus 19 l~~~~~k~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 94 (136)
T 1lu4_A 19 GASLQGKPAVLWFWTPWCPFCNAEAPS-L--SQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWAR 94 (136)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHH
T ss_pred HHHhCCCEEEEEEECCcChhHHHHHHH-H--HHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHh
Confidence 344568999999999999999998753 2 24444444 6777777776643332222211 1112
Q ss_pred cCCCCCCcEEEECCCCcee
Q 003115 199 YGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~ 217 (846)
.+..++|+++|++++|+++
T Consensus 95 ~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 95 YNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp TTCCSSSEEEEECTTSCEE
T ss_pred cCCCCCCEEEEECCCCcEE
Confidence 3788999999999999987
No 117
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.56 E-value=9.8e-08 Score=88.75 Aligned_cols=79 Identities=20% Similarity=0.129 Sum_probs=57.8
Q ss_pred HHHHHHHh--cCCCEEEEEecc-------CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC-------CCCccHHHHHH
Q 003115 129 EAFAEARK--RDVPIFLSIGYS-------TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR-------EERPDVDKVYM 192 (846)
Q Consensus 129 eAl~~Ak~--e~KpI~l~~g~~-------wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~-------ee~p~~~~~y~ 192 (846)
+.+..+.+ .+|||+|.|+++ ||+.|+.|.... .++++.+.++++.++||. ++.+++.+.|
T Consensus 13 ~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~- 88 (123)
T 1wou_A 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVV---REGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL- 88 (123)
T ss_dssp HHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHH---HHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH-
T ss_pred HHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHH---HHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHC-
Confidence 34444433 399999999999 999999998633 334444444799999999 5666666555
Q ss_pred HHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 193 TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 193 ~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.++|+++|+++ |..+.+
T Consensus 89 -------~i~~~Pt~~~~~~-~~~~~g 107 (123)
T 1wou_A 89 -------KVTAVPTLLKYGT-PQKLVE 107 (123)
T ss_dssp -------CCCSSSEEEETTS-SCEEEG
T ss_pred -------CCCeeCEEEEEcC-CceEec
Confidence 8899999999988 444443
No 118
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.54 E-value=7.5e-08 Score=82.36 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=52.3
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
..++.|+++||++|+.+... + .++++.++.++..++||.++.+++.+.| |..|+|+++| +|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEV-V--DEAKKEFGDKIDVEKIDIMVDREKAIEY--------GLMAVPAIAI---NGVV 65 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHH-H--HHHHHHHCSSCCEEEECTTTCGGGGGGT--------CSSCSSEEEE---TTTE
T ss_pred EEEEEEECCCCcchHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHhC--------CceeeCEEEE---CCEE
Confidence 46889999999999999873 3 4566666668999999999988877665 8889999998 8887
No 119
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=1.3e-07 Score=90.28 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=55.0
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHH-----------------HH
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT-----------------YV 195 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~-----------------~~ 195 (846)
+.-.||||+|.|+++||+.|+.+..+ + .++.+.+ ++++..|.|+.+..+++. .|.+ .+
T Consensus 20 ~~~~gk~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 95 (151)
T 3raz_A 20 QSLKAPVRIVNLWATWCGPCRKEMPA-M--SKWYKAQKKGSVDMVGIALDTSDNIG-NFLKQTPVSYPIWRYTGANSRNF 95 (151)
T ss_dssp GGCCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHTSCTTTEEEEEEESSCHHHHH-HHHHHSCCSSCEEEECCSCHHHH
T ss_pred HHhCCCEEEEEEEcCcCHHHHHHHHH-H--HHHHHHhccCCeEEEEEECCChHHHH-HHHHHcCCCCceEecCccchHHH
Confidence 34479999999999999999998752 2 2233333 346788888876433332 2211 01
Q ss_pred HHhcC--CCCCCcEEEECCCCceecc
Q 003115 196 QALYG--GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 196 ~~~~g--~~G~P~~v~l~pdg~~~~~ 219 (846)
....| ..++|+++|+|++|+++..
T Consensus 96 ~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 96 MKTYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp HHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred HHHhCCccCCCCEEEEECCCCcEEEE
Confidence 11235 7899999999999998765
No 120
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.53 E-value=2.1e-07 Score=88.34 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=55.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH---------------HHHHhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~---------------~~~~~~ 199 (846)
-.|||++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.+..++..+.|.+ .+....
T Consensus 28 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 28 LKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 4589999999999999999877532 234444443 577777777655432222211 111224
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003115 200 GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~~~ 219 (846)
++.++|+++|++++|+++..
T Consensus 105 ~v~~~P~~~lid~~G~i~~~ 124 (152)
T 2lja_A 105 LINGIPRFILLDRDGKIISA 124 (152)
T ss_dssp TCCSSCCEEEECTTSCEEES
T ss_pred CcCCCCEEEEECCCCeEEEc
Confidence 78899999999999999875
No 121
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.53 E-value=6.7e-08 Score=91.38 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHH--HHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVD--KVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~--~~y~~~~~~~~g~~G~ 204 (846)
.+.++...++ ||+|.|+++||+.|+.|.. .+.++.++ .+..++||.++.++.. ......++. .++.|+
T Consensus 23 ~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~-~~v~~~ 93 (135)
T 3emx_A 23 PEEFRQLLQG--DAILAVYSKTCPHCHRDWP------QLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNK-AGVEGT 93 (135)
T ss_dssp HHHHHHHHTS--SEEEEEEETTCHHHHHHHH------HHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHH-HTCCSS
T ss_pred HHHHHHHhCC--cEEEEEECCcCHhhhHhCh------hHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHH-cCCcee
Confidence 4556655554 9999999999999999974 44554443 2677777774332211 111122222 388999
Q ss_pred CcEEEECCCCceeccc-cccCC
Q 003115 205 PLSVFLSPDLKPLMGG-TYFPP 225 (846)
Q Consensus 205 P~~v~l~pdg~~~~~~-tY~p~ 225 (846)
|+++|+. +|+++... ++.++
T Consensus 94 Pt~~~~~-~G~~v~~~~G~~~~ 114 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLVGATPW 114 (135)
T ss_dssp SEEEEEE-TTEEEEEEESCCCH
T ss_pred CeEEEEc-CCEEEEEEeCCCCH
Confidence 9888888 99987643 45543
No 122
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.53 E-value=1.9e-07 Score=86.09 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHH
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQA 197 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~~ 197 (846)
.+...||+++|.|+++||+.|+.+.... .++.+.+. ++..|.|+.++.++..+.|.+. ...
T Consensus 20 l~~~~~k~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 95 (136)
T 1zzo_A 20 GESLLGKPAVLWFWAPWCPTCQGEAPVV---GQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWA 95 (136)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHH
T ss_pred HHHhCCCeEEEEEEcCCChhHHHHHHHH---HHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHH
Confidence 3445689999999999999999987532 24444444 6777777765433222222110 111
Q ss_pred hcCCCCCCcEEEECCCCcee
Q 003115 198 LYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~ 217 (846)
..+..++|++++++++|+++
T Consensus 96 ~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 96 NFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp HTTCCSSSEEEEECTTCCEE
T ss_pred HcCCCCCceEEEECCCCCEE
Confidence 23788999999999999987
No 123
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.52 E-value=3.1e-07 Score=87.20 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHHh
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~--------------~~~~~ 198 (846)
+...||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+..++..+.|.+ .+...
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 100 (152)
T 3gl3_A 24 SDKTGSVVYLDFWASWCGPCRQSFPW-M--NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL 100 (152)
T ss_dssp GGGTTSEEEEEEECTTCTHHHHHHHH-H--HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence 44568999999999999999998763 2 344455544 377777777655433222221 11122
Q ss_pred cCCCCCCcEEEECCCCceeccc-cccCC
Q 003115 199 YGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~~-tY~p~ 225 (846)
.+..++|+++++|++|+++... ++.+.
T Consensus 101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~ 128 (152)
T 3gl3_A 101 YGVKGMPTSFLIDRNGKVLLQHVGFRPA 128 (152)
T ss_dssp TTCCSSSEEEEECTTSBEEEEEESCCTT
T ss_pred cCCCCCCeEEEECCCCCEEEEEccCCCc
Confidence 4788999999999999998753 44443
No 124
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.49 E-value=1.7e-07 Score=95.61 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHh----cCeEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003115 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln----~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~ 201 (846)
.++.++..++.++++ +|.|+++||++|+.|... + .++++.+. .++..++||.++.+++.+.| ++
T Consensus 122 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v 190 (226)
T 1a8l_A 122 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM-A--HKFAIENTKAGKGKILGDMVEAIEYPEWADQY--------NV 190 (226)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHT--------TC
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHH-H--HHHHHhcccccCCcEEEEEEEcccCHHHHHhC--------CC
Confidence 467888888888999 999999999999999863 3 45666665 47999999999888877666 88
Q ss_pred CCCCcEEEECCCCceec
Q 003115 202 GGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 202 ~G~P~~v~l~pdg~~~~ 218 (846)
.|+|+++|+ ++|+.+.
T Consensus 191 ~~~Pt~~~~-~~G~~~~ 206 (226)
T 1a8l_A 191 MAVPKIVIQ-VNGEDRV 206 (226)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred cccCeEEEE-eCCceeE
Confidence 999998777 5887764
No 125
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.49 E-value=5.7e-07 Score=85.86 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=55.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHH-----------------HHHHHh
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM-----------------TYVQAL 198 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~-----------------~~~~~~ 198 (846)
.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|. ..+...
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 589999999999999999977532 334554543 47777777765433222221 111223
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.|+.++|+++|+|++|+++..
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 105 YCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred hCCCcCCeEEEECCCCeEEEe
Confidence 478899999999999999875
No 126
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.49 E-value=1e-07 Score=89.09 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=52.4
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC---CccHHHHHHH--------------HHHHh
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE---RPDVDKVYMT--------------YVQAL 198 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee---~p~~~~~y~~--------------~~~~~ 198 (846)
.+|||+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+. .++..+.|.+ .+...
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 789999999999999999987532 33444444 355555555532 2222222211 01122
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.++.++|+++|+|++|+++..
T Consensus 110 ~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 110 YHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp TTCCEESEEEEECTTCCEEEE
T ss_pred cCcCccCeEEEEcCCCcEEEE
Confidence 378899999999999999864
No 127
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.48 E-value=3.3e-07 Score=87.15 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH--------------HHHHh
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~--------------~~~~~ 198 (846)
+.-.||+++|.|+++||++|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+ .+...
T Consensus 22 ~~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (151)
T 2f9s_A 22 SDLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDA 98 (151)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHh
Confidence 334689999999999999999987633 234444543 566677766554432222221 11122
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.++.++|+++|+|++|+++..
T Consensus 99 ~~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 99 YDVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred cCCCCCCeEEEECCCCcEEEE
Confidence 478899999999999999874
No 128
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.46 E-value=3.9e-07 Score=87.76 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC-------------------CccHHHHHHH
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------RPDVDKVYMT 193 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee-------------------~p~~~~~y~~ 193 (846)
+.-+||+|+|.|+++||+.|+.+.... .++.+.+. .+++.|.|+.++ ..++.+.|
T Consensus 37 ~~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 111 (158)
T 3hdc_A 37 AQYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY-- 111 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHT--
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHh--
Confidence 334689999999999999999877532 34555554 467777777765 23333333
Q ss_pred HHHHhcCCCCCCcEEEECCCCceecc-ccccCCC
Q 003115 194 YVQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPE 226 (846)
Q Consensus 194 ~~~~~~g~~G~P~~v~l~pdg~~~~~-~tY~p~~ 226 (846)
++.++|+++|+|++|+++.. .++.+.+
T Consensus 112 ------~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 112 ------GANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp ------TCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred ------CCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 78899999999999999875 3455543
No 129
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.45 E-value=4.2e-07 Score=86.42 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=63.6
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCC-ccHHHHHHHH--------------HHH
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTY--------------VQA 197 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~-p~~~~~y~~~--------------~~~ 197 (846)
+.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+.. ++..+.|.+. +..
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 100 (154)
T 3kcm_A 24 SDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGK 100 (154)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHH
T ss_pred hhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHH
Confidence 334689999999999999999987633 345555544 566666666654 3222222111 112
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..+..++|++++++++|+++... ++.+.. .+.+.+.|+++.
T Consensus 101 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~----~~~l~~~l~~l~ 142 (154)
T 3kcm_A 101 LYGTTGVPETFVIDRHGVILKKVVGAMEWD----HPEVIAFLNNEL 142 (154)
T ss_dssp HHTCCSBCEEEEECTTSBEEEEEESCCCTT----SHHHHHHHHTC-
T ss_pred HhCCCCCCeEEEECCCCcEEEEEcCCCccc----cHHHHHHHHHHH
Confidence 23788999999999999998752 333322 234555555543
No 130
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.45 E-value=3.2e-07 Score=90.68 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=57.7
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HH
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQ 196 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~ 196 (846)
..+.-.||+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++.++..+.|.+. +.
T Consensus 52 ~l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (176)
T 3kh7_A 52 TEADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLG 125 (176)
T ss_dssp EGGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHH
T ss_pred cHHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHH
Confidence 33445699999999999999999975 5667777666777777754444433333211 11
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003115 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
...++.++|+++|+|++|++++.
T Consensus 126 ~~~~v~~~P~~~lid~~G~i~~~ 148 (176)
T 3kh7_A 126 LDLGVYGAPETYLIDKQGIIRHK 148 (176)
T ss_dssp HHHTCCSSCEEEEECTTCBEEEE
T ss_pred HHcCCCCCCeEEEECCCCeEEEE
Confidence 11377899999999999999875
No 131
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.45 E-value=2.8e-07 Score=86.60 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH-hc-CeEEEEEcCCCCccHHHHHHH-----------------HHHH
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYMT-----------------YVQA 197 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~-~FV~vkvD~ee~p~~~~~y~~-----------------~~~~ 197 (846)
.||||+|.|+++||++|+.+.... .++++.+ .+ ++..|.|+.+..++..+.|.+ .+..
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 689999999999999999987632 3455555 33 377777777654422222210 1112
Q ss_pred hcCCCCCCcEEEECCCCceeccc
Q 003115 198 LYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 198 ~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
..+..++|+++|+|++|+++...
T Consensus 109 ~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 109 QYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HTTCCSSSEEEEECTTSBEEEES
T ss_pred hcCCCCcCEEEEECCCCeEEEec
Confidence 24788999999999999998763
No 132
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.42 E-value=7e-08 Score=92.88 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=48.5
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc------CeEEEEEc-------------------------
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVD------------------------- 180 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~------~FV~vkvD------------------------- 180 (846)
..+...||+|+|.|+++||+.|+.+.. .+.++.++ .||.|-+|
T Consensus 32 ~~~~~~gk~vlv~F~a~~C~~C~~~~~------~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (164)
T 2h30_A 32 SVYLKKDKPTLIKFWASWCPLCLSELG------QAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPV 105 (164)
T ss_dssp GGGCCTTSCEEEEECCTTCHHHHHHHH------HHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCE
T ss_pred eHHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceE
Confidence 344567999999999999999998763 22222221 23333332
Q ss_pred -CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 181 -REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 181 -~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.++..++.+.| ++.++|+++|+|++|+++..
T Consensus 106 ~~d~~~~~~~~~--------~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 106 VTDNGGTIAQNL--------NISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp EECTTCHHHHHT--------TCCSSSEEEEECTTSCEEEE
T ss_pred EEcCchHHHHHc--------CCCccceEEEECCCCcEEEE
Confidence 22223333322 78899999999999998864
No 133
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.41 E-value=2.4e-07 Score=87.50 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=56.4
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HH
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MT 193 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y-----------------~~ 193 (846)
.+.-.||+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.++.++..+.| ..
T Consensus 23 l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 99 (144)
T 1i5g_A 23 LPSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEF 99 (144)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred HHHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHH
Confidence 3445689999999999999999987533 34556665 36666666666433211111 11
Q ss_pred HHHHhcCCCCCCcEEEEC-CCCceecc
Q 003115 194 YVQALYGGGGWPLSVFLS-PDLKPLMG 219 (846)
Q Consensus 194 ~~~~~~g~~G~P~~v~l~-pdg~~~~~ 219 (846)
..+ ..++.++|+++|++ ++|+++..
T Consensus 100 ~~~-~~~v~~~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 100 LTT-GFDVKSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp HHH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HHH-HcCCCCCCEEEEEECCCCcEEec
Confidence 222 23788999999999 89999874
No 134
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.40 E-value=9.2e-07 Score=84.10 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=53.9
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH---------------HH
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY---------------VQ 196 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~---------------~~ 196 (846)
.+...|||++|.|+++||++|+.+.. .+.++.++ ++..|.|+.++.++..+.|.+. +.
T Consensus 37 l~~~~gk~~ll~f~~~~C~~C~~~~~------~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (156)
T 1kng_A 37 PAAFKGKVSLVNVWASWCVPCHDEAP------LLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS 110 (156)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHH------HHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred hHHhCCCEEEEEEEcccCHhHHHHHH------HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence 33445999999999999999998763 44444443 3666666655444322222111 11
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003115 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
...+..++|++++++++|+++..
T Consensus 111 ~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 111 IEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HHTTCCSSCEEEEECTTSBEEEE
T ss_pred HhcCcCccCeEEEEcCCCCEEEE
Confidence 12378899999999999999864
No 135
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.38 E-value=9.2e-08 Score=87.50 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC----CCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE----ERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e----e~p~~~~~y~~~~~~~~g~~G 203 (846)
+++++.|+..+|+++|.|+++||+.|+.|.. +|+.- + +.|-.|.+|.+ +.+++.+.| ++.|
T Consensus 2 ~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~~~~--a----~~~~~v~~~~~~~~~~~~~l~~~~--------~V~~ 66 (106)
T 3kp8_A 2 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGAA--F----DQVPYVECSPNGPGTPQAQECTEA--------GITS 66 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HHGGG--G----GGSCEEESCTTCTTSCCCHHHHHT--------TCCS
T ss_pred hHhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HHHHH--H----HhCCEEEEecccccchhHHHHHHc--------CCeE
Confidence 4678888888999999999999999999974 33321 2 22323444432 567776655 8999
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|+++| +|+++.
T Consensus 67 ~PT~~i---~G~~~~ 78 (106)
T 3kp8_A 67 YPTWII---NGRTYT 78 (106)
T ss_dssp SSEEEE---TTEEEE
T ss_pred eCEEEE---CCEEec
Confidence 999777 887643
No 136
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.38 E-value=2.5e-07 Score=87.34 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=61.9
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH----------------HHHh
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY----------------VQAL 198 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~----------------~~~~ 198 (846)
-.||+|+|.|+++||+.|+.+....-++|.+.+.+. +++..|-|+.++.++.-+.|.+. ....
T Consensus 29 ~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (142)
T 3eur_A 29 FPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL 108 (142)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence 347999999999999999999876666677877774 46777788777554432222110 1123
Q ss_pred cCCCCCCcEEEECCCCceeccc
Q 003115 199 YGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 199 ~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
.++.++|+++++|++|+++...
T Consensus 109 ~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 109 YDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp SCCTTCSEEEEECTTCBEEEEE
T ss_pred cCCCcCCeEEEECCCCcEEecC
Confidence 4678999999999999998753
No 137
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.38 E-value=5.3e-07 Score=88.22 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHH----------------HHH
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYM----------------TYV 195 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~----------------~~~ 195 (846)
+.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++.-+.|. ..+
T Consensus 44 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (165)
T 3s9f_A 44 DSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL 120 (165)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHH
Confidence 334689999999999999999987533 345555553 55566665554432111110 112
Q ss_pred HHhcCCCCCCcEEEECCC-Cceecc
Q 003115 196 QALYGGGGWPLSVFLSPD-LKPLMG 219 (846)
Q Consensus 196 ~~~~g~~G~P~~v~l~pd-g~~~~~ 219 (846)
....++.++|+++|++++ |+++..
T Consensus 121 ~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 121 TKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHcCCCCCCEEEEEeCCCCEEEec
Confidence 223478899999999998 999874
No 138
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.37 E-value=7.5e-07 Score=86.11 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=55.3
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCC------------------CCccHHHHHHHH
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDRE------------------ERPDVDKVYMTY 194 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~e------------------e~p~~~~~y~~~ 194 (846)
.-.||+++|.|+++||+.|+.+.. .+.++..+ ++..|.|+.+ +.++..+.|.+.
T Consensus 34 ~~~gk~~lv~F~~~~C~~C~~~~~------~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3ha9_A 34 NVGGDVVILWFMAAWCPSCVYMAD------LLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIAN 107 (165)
T ss_dssp GCCSSEEEEEEECTTCTTHHHHHH------HHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHH
T ss_pred HhCCCEEEEEEECCCCcchhhhHH------HHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHH
Confidence 346899999999999999999874 44443332 5666666655 343332333221
Q ss_pred --------------HHHhcCCCCCCcEEEECCCCceecccccc
Q 003115 195 --------------VQALYGGGGWPLSVFLSPDLKPLMGGTYF 223 (846)
Q Consensus 195 --------------~~~~~g~~G~P~~v~l~pdg~~~~~~tY~ 223 (846)
+....++.++|+++|+|++|+++. .++.
T Consensus 108 ~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~ 149 (165)
T 3ha9_A 108 YGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTT 149 (165)
T ss_dssp HSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEES
T ss_pred cCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCC
Confidence 112247789999999999999998 5555
No 139
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.36 E-value=5.9e-07 Score=92.06 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.+.++...+++|+++|.|+++||+.|+.|.... .++++.+... +..++||.++.+++.+.| ++.++
T Consensus 137 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~ 205 (241)
T 3idv_A 137 KENFDEVVNDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAETDLAKRF--------DVSGY 205 (241)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSS
T ss_pred HHHHHHhhccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCHHHHHHc--------CCccc
Confidence 345556667789999999999999999997632 3455555433 899999999988877766 88899
Q ss_pred CcEEEECCCCceec
Q 003115 205 PLSVFLSPDLKPLM 218 (846)
Q Consensus 205 P~~v~l~pdg~~~~ 218 (846)
|+++|+. +|+++.
T Consensus 206 Pt~~~~~-~g~~~~ 218 (241)
T 3idv_A 206 PTLKIFR-KGRPYD 218 (241)
T ss_dssp SEEEEEE-TTEEEE
T ss_pred CEEEEEE-CCeEEE
Confidence 9999987 577664
No 140
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.36 E-value=5.5e-07 Score=85.39 Aligned_cols=83 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HH
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MT 193 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y-----------------~~ 193 (846)
.+.-.||+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.++.++..+.| ..
T Consensus 23 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 99 (146)
T 1o8x_A 23 VKSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQK 99 (146)
T ss_dssp GGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHH
T ss_pred HHHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHH
Confidence 3445689999999999999999987532 34556665 36666666665433211111 12
Q ss_pred HHHHhcCCCCCCcEEEEC-CCCceecc
Q 003115 194 YVQALYGGGGWPLSVFLS-PDLKPLMG 219 (846)
Q Consensus 194 ~~~~~~g~~G~P~~v~l~-pdg~~~~~ 219 (846)
..+ ..++.++|+++|++ ++|+++..
T Consensus 100 ~~~-~~~v~~~Pt~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 100 LSK-HFNVESIPTLIGVDADSGDVVTT 125 (146)
T ss_dssp HHH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HHH-HhCCCCCCEEEEEECCCCeEEEe
Confidence 222 24788999999999 89999874
No 141
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=5.2e-08 Score=93.77 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHHH----------
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQ---------- 196 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~p~~~~~y~~~~~---------- 196 (846)
+.+..+.-+||+|+|.|+++||+.|+.+.. .++. ++.+.+ ++++..|.|+.++.++..+.|.+...
T Consensus 24 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~-~l~~-~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~ 101 (159)
T 2ls5_A 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEK-DIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG 101 (159)
Confidence 345555557999999999999999998765 3443 122222 35677777777665554333432110
Q ss_pred ----HhcC--CCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 197 ----ALYG--GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 197 ----~~~g--~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
...+ ..|+|+++|+|++|+++.......+ +.+.++|+++.+
T Consensus 102 ~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~------~~l~~~l~~l~~ 148 (159)
T 2ls5_A 102 ADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNE------EEFASLVQQINE 148 (159)
Confidence 0112 4579999999999999875321222 245566655543
No 142
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.34 E-value=8e-07 Score=92.30 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=55.9
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcC--CCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~--ee~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.+.+|+++|.|+++||+.|+.|.... .++++.+.. .+..++||. ++.+++.+.| ++.++|+++|
T Consensus 27 ~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~--------~v~~~Pt~~~ 95 (244)
T 3q6o_A 27 LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDF--------NIPGFPTVRF 95 (244)
T ss_dssp SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHT--------TCCSSSEEEE
T ss_pred hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHc--------CCCccCEEEE
Confidence 45679999999999999999998633 556666765 688889988 5667766655 8899999999
Q ss_pred ECCCCc
Q 003115 210 LSPDLK 215 (846)
Q Consensus 210 l~pdg~ 215 (846)
+++.++
T Consensus 96 ~~~g~~ 101 (244)
T 3q6o_A 96 FXAFTX 101 (244)
T ss_dssp ECTTCC
T ss_pred EeCCCc
Confidence 997433
No 143
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.34 E-value=5.8e-07 Score=86.01 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=51.7
Q ss_pred HHHhcCCCEEEEEeccCChhhhh-hhhcccCCHHHHHHHh-cCeEEEEEcCC------CCccHHHHHHHH----------
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHV-MEVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY---------- 194 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~-me~etf~d~eVa~~ln-~~FV~vkvD~e------e~p~~~~~y~~~---------- 194 (846)
.+.-.||||+|.|+++||+.|+. |.. .+ .++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 25 l~~~~gk~vlv~F~a~~C~~C~~e~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 101 (160)
T 3lor_A 25 NEDLRGKVVVVEVFQMLCPGCVNHGVP-QA--QKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVD 101 (160)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhCCCEEEEEEEcCCCcchhhhhhH-HH--HHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEEC
Confidence 34445999999999999999998 443 11 22333333 23666666542 122222222111
Q ss_pred ----------HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 ----------VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ----------~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....|+.++|+++|+|++|+++..
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 102 MPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 1122378899999999999999875
No 144
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.34 E-value=8.1e-07 Score=83.59 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=54.7
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHH
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y-----------------~~~ 194 (846)
+.-+||+|+|.|+++||+.|+.+.... .++++.+. +++..|.|+.+..++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
T 1o73_A 24 GSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL 100 (144)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence 344689999999999999999987532 34555554 35666666665433211111 112
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003115 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~-pdg~~~~~ 219 (846)
.+ ..++.++|+++|++ ++|+++..
T Consensus 101 ~~-~~~v~~~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 101 GK-TFGVESIPTLITINADTGAIIGT 125 (144)
T ss_dssp HH-HHTCCSSSEEEEEETTTCCEEES
T ss_pred HH-HcCCCCCCEEEEEECCCCeEEec
Confidence 22 23788999999999 89999874
No 145
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.32 E-value=1.1e-06 Score=84.09 Aligned_cols=84 Identities=15% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHh-cCeEEEEEcCC------CCccHHHHHHHH----------
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY---------- 194 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln-~~FV~vkvD~e------e~p~~~~~y~~~---------- 194 (846)
.+.-.||+|+|.|+++||+.|+.+ .. .+ .++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 23 l~~~~gk~vlv~f~a~wC~~C~~~~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 99 (158)
T 3eyt_A 23 LADLRGKVIVIEAFQMLCPGCVMHGIP-LA--QKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVD 99 (158)
T ss_dssp TGGGTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhCCCEEEEEEECCcCcchhhhhhH-HH--HHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEc
Confidence 344459999999999999999984 42 12 23344443 34666666542 122222222111
Q ss_pred ---------HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 ---------VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ---------~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....++.++|+++|+|++|+++..
T Consensus 100 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 100 QPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp CCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred CccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 1122378899999999999999875
No 146
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.3e-06 Score=94.25 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=63.6
Q ss_pred CCccCccchHHHHHHHH-hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHH
Q 003115 119 NPVDWFAWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYV 195 (846)
Q Consensus 119 ~~v~W~~~~~eAl~~Ak-~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~p~~~~~y~~~~ 195 (846)
.+-++.....+-++.+- +.+|||+|.|+++||+.|+.|..+. .++++.++..+..++||.+ +.+++.+.|
T Consensus 15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~---- 87 (298)
T 3ed3_A 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKY---- 87 (298)
T ss_dssp SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHT----
T ss_pred CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhC----
Confidence 33445555566777665 5799999999999999999998743 5677777766666666655 566666555
Q ss_pred HHhcCCCCCCcEEEECCCC
Q 003115 196 QALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 196 ~~~~g~~G~P~~v~l~pdg 214 (846)
++.|+|+++|+.+.+
T Consensus 88 ----~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 88 ----DVNGFPTLMVFRPPK 102 (298)
T ss_dssp ----TCCBSSEEEEEECCC
T ss_pred ----CCCccceEEEEECCc
Confidence 889999999998754
No 147
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.31 E-value=1.1e-07 Score=91.78 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhcCeE--EEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFV--SIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~~FV--~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
+-|+...+++++++|.|+++| |+.|+.|.. .| .++++.+ .++. .++||.++.+++.+.| ++.|+
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P-~l--~~la~~~-~~v~~~~~~Vd~d~~~~la~~~--------~V~~i 92 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPV-MI--AELLREF-PQFDWQVAVADLEQSEAIGDRF--------NVRRF 92 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHH-HH--HHHHHTC-TTSCCEEEEECHHHHHHHHHTT--------TCCSS
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHH-HH--HHHHHHh-cccceeEEEEECCCCHHHHHhc--------CCCcC
Confidence 444555556778999999888 999999985 23 2344444 4567 8899998877776655 88999
Q ss_pred CcEEEECCCCceecc
Q 003115 205 PLSVFLSPDLKPLMG 219 (846)
Q Consensus 205 P~~v~l~pdg~~~~~ 219 (846)
|+++|+ .+|+++..
T Consensus 93 PT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 93 PATLVF-TDGKLRGA 106 (142)
T ss_dssp SEEEEE-SCC----C
T ss_pred CeEEEE-eCCEEEEE
Confidence 999999 89998754
No 148
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.31 E-value=8e-07 Score=74.77 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=50.8
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003115 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
+.|.|+++||+.|+.|.... .++++.++.++..++|| .+++.+.| |+.|+|+++| +|+++..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~---~~~~~~~~--------~v~~~Pt~~~---~G~~~~~- 63 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK---EMDQILEA--------GLTALPGLAV---DGELKIM- 63 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC---SHHHHHHH--------TCSSSSCEEE---TTEEEEC-
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec---CHHHHHHC--------CCCcCCEEEE---CCEEEEc-
Confidence 46889999999999998744 56777777688889998 45555554 8899999998 8988765
Q ss_pred ccc
Q 003115 221 TYF 223 (846)
Q Consensus 221 tY~ 223 (846)
++.
T Consensus 64 G~~ 66 (77)
T 1ilo_A 64 GRV 66 (77)
T ss_dssp SSC
T ss_pred CCC
Confidence 444
No 149
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.31 E-value=2e-06 Score=81.64 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=50.1
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-CccHHHHHHH--------------HHHHhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-RPDVDKVYMT--------------YVQALY 199 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-~p~~~~~y~~--------------~~~~~~ 199 (846)
-.||+++|.|+++||+.|+.+... + .++.+.+.+ ++..|-|+.+. .++..+.|.+ .+....
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPK-I--IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF 102 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHH-H--HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc
Confidence 368999999999999999998763 2 234555543 35555544321 1111111100 001112
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003115 200 GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~~~ 219 (846)
+..++|+++|+|++|+++..
T Consensus 103 ~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 103 GTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp TCCSSSEEEEECSSSCCCEE
T ss_pred CCCccCeEEEECCCCcEEEE
Confidence 78899999999999998754
No 150
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=98.31 E-value=1.4e-05 Score=93.33 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchh-------------------HHHHHHHHHHHHHHHHc
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKM-------------------LYDQGQLANVYLDAFSL 395 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKM-------------------LyDNA~Ll~~ya~Ay~~ 395 (846)
+++++-+.--+|=|.+ .++. .|+||. .|...|.-+.-+.. ---|++++.+++.|+++
T Consensus 190 ~~lldE~rWg~D~llk--m~~~-~g~~y~-qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asrv 265 (586)
T 3h7l_A 190 TRLIEEALFGADFLVR--MQNE-KGFFYM-TVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASRL 265 (586)
T ss_dssp HHHHHHHHHHHHHHHH--TBCT-TSCBBC-EEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHh--cccC-CCeEEE-EecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhcc
Confidence 5788888888887777 5664 577774 45444753210110 01389999999999999
Q ss_pred -----cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcc
Q 003115 396 -----TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYL 470 (846)
Q Consensus 396 -----t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i 470 (846)
++.+.|++.|+++++|+.+++. . |+ .|.++
T Consensus 266 f~d~~~~a~~~L~aA~~a~~fa~~~~~----~-y~-~~g~~--------------------------------------- 300 (586)
T 3h7l_A 266 GVHGEYDQQKYRNAAENGYWHLKEHNT----Q-YL-NDGEE--------------------------------------- 300 (586)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHHHHH----H-HS-TTSCC---------------------------------------
T ss_pred cCCCCcChHHHHHHHHHHHHHHHhcCc----c-cc-CCCCc---------------------------------------
Confidence 5556789999999999998742 1 21 00000
Q ss_pred cCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHH
Q 003115 471 KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVI 550 (846)
Q Consensus 471 ~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNglmI 550 (846)
| +.||. .++
T Consensus 301 ---~-------------------------------------------------------------~~De~-------~~~ 309 (586)
T 3h7l_A 301 ---N-------------------------------------------------------------IIDEY-------CAL 309 (586)
T ss_dssp ---C-------------------------------------------------------------HHHHH-------HHH
T ss_pred ---c-------------------------------------------------------------chhHH-------HHH
Confidence 0 12333 579
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 003115 551 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLL 630 (846)
Q Consensus 551 ~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl 630 (846)
||.++.|++++| +.||+.|+..++.+.+++++.+.++++++..++.+...-.....+..+.+|+
T Consensus 310 WAA~eLy~ATgd----------------~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaLl 373 (586)
T 3h7l_A 310 LASVELFKATKE----------------TRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALC 373 (586)
T ss_dssp HHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHHH
T ss_pred HHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHHH
Confidence 999999999998 7999999999999999998766778888754432211111114567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 003115 631 DLYEFGSGTKWLVWAIELQNTQDE 654 (846)
Q Consensus 631 ~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (846)
.+..++++..+.+.|++++....+
T Consensus 374 ~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 374 EYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HhhhhcCChHHHHHHHHHHHHHhh
Confidence 999999998888888877776655
No 151
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.30 E-value=1.9e-06 Score=82.75 Aligned_cols=80 Identities=6% Similarity=0.033 Sum_probs=54.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHH---------------HHHHhcC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALYG 200 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~---------------~~~~~~g 200 (846)
.||||+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.++.++..+.|.. .+....+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLA-L--RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHH-H--HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 58999999999999999986542 2 234444443 478888877765443222210 0112237
Q ss_pred CCCCCcEEEECCCCceecc
Q 003115 201 GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~~ 219 (846)
..++|+++|+|++|+++..
T Consensus 111 v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 111 VTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp CCSCSEEEEEETTTEEEEE
T ss_pred cccCceEEEECCCCeEEEe
Confidence 8899999999999999875
No 152
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.29 E-value=1.3e-06 Score=86.11 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=57.6
Q ss_pred HHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC-e------EEEEEcCCC-CccHHHHHHHHHH-------
Q 003115 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-F------VSIKVDREE-RPDVDKVYMTYVQ------- 196 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-F------V~vkvD~ee-~p~~~~~y~~~~~------- 196 (846)
..+.-.||+|+|.|+++||+.|+.+... + .++.+.+.+. + ..|.|+.+. .++..+.|.+...
T Consensus 53 ~l~~~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~ 129 (183)
T 3lwa_A 53 NLSDFENQVVILNAWGQWCAPCRSESDD-L--QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIY 129 (183)
T ss_dssp EGGGGTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEE
T ss_pred cHHHhCCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEE
Confidence 3344568999999999999999988753 2 3345555443 6 777777766 5655555533211
Q ss_pred --------Hh--cCCCCCCcEEEECCCCceecc
Q 003115 197 --------AL--YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 --------~~--~g~~G~P~~v~l~pdg~~~~~ 219 (846)
.+ .+..++|++++++++|+++..
T Consensus 130 d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 130 DPPFMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp CTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred CCcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 01 135789999999999999864
No 153
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.29 E-value=1.8e-06 Score=81.76 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=51.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
.+|||+|+|+++||+.|+.|.. .|+ ++++.. .++..++||.++.++ . .++.++|+++|+. +|++
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~~~~~~---~--------~~i~~~Pt~~~~~-~G~~ 92 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQ-HLS--VLARKF-PETKFVKAIVNSCIE---H--------YHDNCLPTIFVYK-NGQI 92 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHH-HHH--HHHHHC-SSEEEEEECCSSSCS---S--------CCSSCCSEEEEES-SSSC
T ss_pred CCCEEEEEEECCCChHHHHHHH-HHH--HHHHHC-CCcEEEEEEhhcCcc---c--------CCCCCCCEEEEEE-CCEE
Confidence 3589999999999999999986 232 344433 357888999987652 2 3788999999997 8988
Q ss_pred ecc
Q 003115 217 LMG 219 (846)
Q Consensus 217 ~~~ 219 (846)
+..
T Consensus 93 v~~ 95 (135)
T 2dbc_A 93 EGK 95 (135)
T ss_dssp SEE
T ss_pred EEE
Confidence 754
No 154
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.27 E-value=8.8e-07 Score=97.16 Aligned_cols=79 Identities=19% Similarity=0.112 Sum_probs=63.9
Q ss_pred hHHHHHHHHhcCCCEEEEEeccCChhhhhhhhc------ccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhc
Q 003115 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVE------SFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALY 199 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~e------tf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~ 199 (846)
.++-+..+.+++++++|.|+++||+ |+.|..+ +|+ ++++.++. .+..++||.++.+++.+.|
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~~~l~~~~-------- 85 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKEAKLAKKL-------- 85 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTTHHHHHHH--------
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCCHHHHHhc--------
Confidence 3566777878899999999999999 9776543 143 67778876 5999999999988887776
Q ss_pred CCCCCCcEEEECCCCcee
Q 003115 200 GGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~ 217 (846)
++.|+|+++|+ .+|++.
T Consensus 86 ~v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 86 GFDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp TCCSTTEEEEE-ETTEEE
T ss_pred CCCccceEEEE-ECCcEE
Confidence 88999999999 677754
No 155
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.26 E-value=1.2e-06 Score=89.56 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=58.3
Q ss_pred hHHHHHHHHhcCCCE-EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI-~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
.++.++...+.++|+ ++.|+++||+.|+.|... + .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 124 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~-~--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 191 (229)
T 2ywm_A 124 SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVM-A--WDFALAN-DYITSKVIDASENQDLAEQF--------QVVGVP 191 (229)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHH-H--HHHHHHC-TTEEEEEEEGGGCHHHHHHT--------TCCSSS
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHH-H--HHHHHHC-CCeEEEEEECCCCHHHHHHc--------CCcccC
Confidence 367777777788888 788999999999999842 2 2334333 36888999999888877766 888999
Q ss_pred cEEEECCCCce
Q 003115 206 LSVFLSPDLKP 216 (846)
Q Consensus 206 ~~v~l~pdg~~ 216 (846)
+++| +|++
T Consensus 192 t~~~---~G~~ 199 (229)
T 2ywm_A 192 KIVI---NKGV 199 (229)
T ss_dssp EEEE---GGGT
T ss_pred EEEE---CCEE
Confidence 9998 7874
No 156
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=97.54 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHH------hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL------NDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l------n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.+..+.+++|+|+|.|+++||+.|+.|..+ | .++++.+ +..++.++||.++.+++.+.| ++.|
T Consensus 14 ~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~ 82 (382)
T 2r2j_A 14 NIDEILNNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQHSDIAQRY--------RISK 82 (382)
T ss_dssp THHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTCHHHHHHT--------TCCE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCccHHHHHhc--------CCCc
Confidence 344455678999999999999999999974 3 4667777 335899999999888877666 8899
Q ss_pred CCcEEEECCCCcee
Q 003115 204 WPLSVFLSPDLKPL 217 (846)
Q Consensus 204 ~P~~v~l~pdg~~~ 217 (846)
+|+++|+ .+|+++
T Consensus 83 ~Pt~~~f-~~G~~~ 95 (382)
T 2r2j_A 83 YPTLKLF-RNGMMM 95 (382)
T ss_dssp ESEEEEE-ETTEEE
T ss_pred CCEEEEE-eCCcEe
Confidence 9999987 477765
No 157
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=97.55 E-value=1.4e-07 Score=88.47 Aligned_cols=83 Identities=23% Similarity=0.170 Sum_probs=52.0
Q ss_pred hcCC-CEEEEEeccCChhhhhhhhcccCCHHHHHHH---hcCeEEEEEcCCCCccHHHHHHH-----------------H
Q 003115 136 KRDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYMT-----------------Y 194 (846)
Q Consensus 136 ~e~K-pI~l~~g~~wC~wC~~me~etf~d~eVa~~l---n~~FV~vkvD~ee~p~~~~~y~~-----------------~ 194 (846)
-.|| +|+|.|+++||+.|+.+... + .++.+.+ ++++..|.|+.++.++..+.|.+ .
T Consensus 23 ~~gk~~vll~F~a~wC~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 23 LKDKDIIGFYFSAHWCPPCRGFTPI-L--ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 4578 99999999999999988753 2 2334444 13455555555443321111110 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceecccc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMGGT 221 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~~t 221 (846)
+....++.++|+++|++++|+++...+
T Consensus 100 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKKDGTLISMNG 126 (143)
Confidence 111236778999999999999987643
No 158
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.22 E-value=8.9e-07 Score=84.30 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=50.1
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHH-----------------HHHHHhcCC
Q 003115 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-----------------TYVQALYGG 201 (846)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~-----------------~~~~~~~g~ 201 (846)
|||+|.|+++||+.|+.+.... .++.+.++=.||.|.+|.++.++..+.|. ..+....++
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l---~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL---HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV 107 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred CeEEEEEEcccChhHHHHHHHH---HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence 9999999999999999987533 33444443245555554233332222221 111223477
Q ss_pred CCCCcEEEECCCCceecc
Q 003115 202 GGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 202 ~G~P~~v~l~pdg~~~~~ 219 (846)
.++|+++++|++|+++..
T Consensus 108 ~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 108 LGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp CSSCEEEEECTTSEEEEE
T ss_pred CcccEEEEECCCCCEEEE
Confidence 899999999999998865
No 159
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.20 E-value=2.2e-06 Score=79.48 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCcc----HHHHHHHHHHHhcCCC-
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD----VDKVYMTYVQALYGGG- 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~----~~~~y~~~~~~~~g~~- 202 (846)
.+-|+++.+++|||+|+|++.||+.|+.|.. .|+. +++ ..+.-.++||+++.++ +...| |+.
T Consensus 14 ~e~f~~ii~~~~~vvi~khatwCgpc~~~~~-~~e~--~~~--~~~v~~~~vdVde~r~~Sn~IA~~~--------~V~h 80 (112)
T 3iv4_A 14 IDQFEQVIEENKYVFVLKHSETCPISANAYD-QFNK--FLY--ERDMDGYYLIVQQERDLSDYIAKKT--------NVKH 80 (112)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHHHH-HHHH--HHH--HHTCCEEEEEGGGGHHHHHHHHHHH--------TCCC
T ss_pred HHHHHHHHhcCCCEEEEEECCcCHhHHHHHH-HHHH--Hhc--cCCceEEEEEeecCchhhHHHHHHh--------CCcc
Confidence 5567777777999999999999999999985 3322 222 1356666777777666 44444 777
Q ss_pred CCCcEEEECCCCceecc
Q 003115 203 GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~ 219 (846)
..|+.+++ .+|++++.
T Consensus 81 ~sPq~il~-k~G~~v~~ 96 (112)
T 3iv4_A 81 ESPQAFYF-VNGEMVWN 96 (112)
T ss_dssp CSSEEEEE-ETTEEEEE
T ss_pred CCCeEEEE-ECCEEEEE
Confidence 49999988 78888875
No 160
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.19 E-value=1.2e-06 Score=99.93 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=57.1
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
..+.+|+|+|.|+++||+.|+.|.... .++++.+.. +++.++||.++. ++.+.| ++.|+|+++|+.
T Consensus 366 ~~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~-~~~~~~--------~v~~~Pt~~~~~ 433 (481)
T 3f8u_A 366 VNNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN-DVPSPY--------EVRGFPTIYFSP 433 (481)
T ss_dssp HTCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS-CCCTTC--------CCCSSSEEEEEC
T ss_pred hhcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch-hhHhhC--------CCcccCEEEEEe
Confidence 345699999999999999999998743 567777765 699999999876 554444 788999999999
Q ss_pred CCCc
Q 003115 212 PDLK 215 (846)
Q Consensus 212 pdg~ 215 (846)
++|+
T Consensus 434 ~~~~ 437 (481)
T 3f8u_A 434 ANKK 437 (481)
T ss_dssp TTCT
T ss_pred CCCe
Confidence 8887
No 161
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.17 E-value=2.7e-06 Score=97.78 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=61.2
Q ss_pred HHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
-+..+.+++++++|.|+++||+.|+.|..+ | .++++.++. ++..++||.++.+++.+.| |+.|+|+++
T Consensus 23 ~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~ 91 (504)
T 2b5e_A 23 SFNEYIQSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTENQDLCMEH--------NIPGFPSLK 91 (504)
T ss_dssp THHHHHTTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCCHHHHHhc--------CCCcCCEEE
Confidence 345555779999999999999999999974 3 567778876 4999999999988877766 889999999
Q ss_pred EECCCCc
Q 003115 209 FLSPDLK 215 (846)
Q Consensus 209 ~l~pdg~ 215 (846)
|+.. |+
T Consensus 92 ~~~~-g~ 97 (504)
T 2b5e_A 92 IFKN-SD 97 (504)
T ss_dssp EEET-TC
T ss_pred EEeC-Cc
Confidence 9965 55
No 162
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=7.5e-06 Score=77.82 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=55.4
Q ss_pred cCCCEEEEEeccCChh--hhhhhhcccCCHHHHHHH-h-cCeEEEEEcCCCCccHHHHHHH-----------------HH
Q 003115 137 RDVPIFLSIGYSTCHW--CHVMEVESFEDEGVAKLL-N-DWFVSIKVDREERPDVDKVYMT-----------------YV 195 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w--C~~me~etf~d~eVa~~l-n-~~FV~vkvD~ee~p~~~~~y~~-----------------~~ 195 (846)
.||+|+|.|+++||+. |+.+... + .++.+.+ . +++..|.|+.+..++.-+.|.+ .+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~-l--~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSE-L--REIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHH-H--HHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHH-H--HHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 5899999999999999 9987642 2 2344444 3 3477777777655433233321 11
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc
Q 003115 196 QALYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 196 ~~~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
....+..++|+++|+|++|+++...
T Consensus 109 ~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHcCCCccCeEEEECCCCEEEEcc
Confidence 2224788999999999999998753
No 163
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.15 E-value=5.6e-06 Score=78.03 Aligned_cols=77 Identities=8% Similarity=-0.049 Sum_probs=52.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh----cCeEEEEEcCCCCccHHHHHHHH------------------
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTY------------------ 194 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln----~~FV~vkvD~ee~p~~~~~y~~~------------------ 194 (846)
.||+|+|+|+++||+.|+.+. |.+.++.+ +++..|-|+.++.++.-+.+.+.
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 589999999999999999876 44444444 24777777766544322222111
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....++.++|+++++|++|+++..
T Consensus 105 ~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred HHHHcCCCCCCcEEEECCCCEEEEc
Confidence 1122367789999999999999875
No 164
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.13 E-value=4.1e-06 Score=76.36 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v 208 (846)
+.++...+ +++|++ |+++||++|+.|.. +.+.+...|..|.||.++... ... ..+....|+.++|++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~--~~~-~~l~~~~~v~~~Pt~- 77 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGS--QLQ-SALAHWTGRGTVPNV- 77 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHH--HHH-HHHHHHHSCCSSCEE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChH--HHH-HHHHHHhCCCCcCEE-
Confidence 34444444 568887 99999999999874 223345678888888765411 111 111122388899998
Q ss_pred EECCCCceecc
Q 003115 209 FLSPDLKPLMG 219 (846)
Q Consensus 209 ~l~pdg~~~~~ 219 (846)
|+ +|+.+.+
T Consensus 78 ~~--~g~~v~~ 86 (116)
T 2e7p_A 78 FI--GGKQIGG 86 (116)
T ss_dssp EE--TTEEEEC
T ss_pred EE--CCEEECC
Confidence 55 6777754
No 165
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.11 E-value=5.9e-06 Score=81.71 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=51.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC-------CccHHHHHHHH--------------
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-------RPDVDKVYMTY-------------- 194 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee-------~p~~~~~y~~~-------------- 194 (846)
-.||+|+|.|+++||+.|+.+... + .++.+.+.+.+..|.|+.+. .++..+.|.+.
T Consensus 31 ~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~ 107 (188)
T 2cvb_A 31 FHEPLLAVVFMCNHCPYVKGSIGE-L--VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE 107 (188)
T ss_dssp CCSSEEEEEEECSSCHHHHTTHHH-H--HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcch
Confidence 358999999999999999976542 2 22344443336666666531 22221222110
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 ~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....+..++|+++|+|++|++++.
T Consensus 108 ~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 108 VAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHcCCCCCCeEEEECCCCcEEEE
Confidence 1112377889999999999999876
No 166
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.09 E-value=1.2e-05 Score=79.33 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=52.2
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCC-ccHHHHHHHHHH----------------H
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTYVQ----------------A 197 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~-p~~~~~y~~~~~----------------~ 197 (846)
-.||+|+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+.. ++..+.|.+... .
T Consensus 58 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 58 FRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred cCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 3689999999999999999977632 34555554 4566666665532 232233322110 0
Q ss_pred h---cCCCCCCcEEEECCCCceecc
Q 003115 198 L---YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 198 ~---~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+ .+..++|+++|+|++|+++..
T Consensus 135 ~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hccccccCCCCEEEEECCCCCEEEE
Confidence 0 011389999999999999864
No 167
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=98.07 E-value=4.6e-06 Score=83.59 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=59.2
Q ss_pred hcCCCEEEEEec-------cCChhhhhhhhcccCCHHHHHHHh-----cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 136 KRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 136 ~e~KpI~l~~g~-------~wC~wC~~me~etf~d~eVa~~ln-----~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
..+.||+|+|++ .||+.|+.|.. +| .+|++.+. ...+.+|||.++.|++.+.| |+.+
T Consensus 35 ~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P-~~--e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~--------~I~s 103 (178)
T 3ga4_A 35 VPGYFNILYITMRGTNSNGMSCQLCHDFEK-TY--HAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL--------KLQN 103 (178)
T ss_dssp CTTCEEEEEEECCSBCTTSCBCHHHHHHHH-HH--HHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHT--------TCCS
T ss_pred cCCCcEEEEEeCCCCCCCCCCChhHHHHHH-HH--HHHHHHhhhccCCCCEEEEEEECccCHHHHHHc--------CCCC
Confidence 357899999999 49999999986 33 45666665 56889999999999988877 8999
Q ss_pred CCcEEEECCCCcee
Q 003115 204 WPLSVFLSPDLKPL 217 (846)
Q Consensus 204 ~P~~v~l~pdg~~~ 217 (846)
+|+.+++-+.+.+-
T Consensus 104 iPtl~~F~~g~~~~ 117 (178)
T 3ga4_A 104 VPHLVVYPPAESNK 117 (178)
T ss_dssp SCEEEEECCCCGGG
T ss_pred CCEEEEEcCCCCCC
Confidence 99999999987665
No 168
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.03 E-value=8.5e-06 Score=94.55 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=58.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEE
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVF 209 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~G~P~~v~ 209 (846)
.+.+|+|+|+|+++||+.|+.|.... .++++.+.. .+..++||.++ .+++.+.| ++.|+|+++|
T Consensus 27 ~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~--------~V~~~PTl~~ 95 (519)
T 3t58_A 27 LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREF--------NIAGFPTVRF 95 (519)
T ss_dssp SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT--------TCCSBSEEEE
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHc--------CCcccCEEEE
Confidence 45679999999999999999998743 567777765 69999999853 56666555 8899999999
Q ss_pred ECC---CCcee
Q 003115 210 LSP---DLKPL 217 (846)
Q Consensus 210 l~p---dg~~~ 217 (846)
+++ +|+++
T Consensus 96 f~~g~~~G~~~ 106 (519)
T 3t58_A 96 FQAFTKNGSGA 106 (519)
T ss_dssp ECTTCCSCCCE
T ss_pred EcCcccCCCce
Confidence 998 66643
No 169
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.02 E-value=2.7e-06 Score=89.48 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=52.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
.+|+|+|.|+++||+.|+.|... | .++++... ++..++||.++ +++...| ++.++|+++|+. +|++
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~-l--~~La~~~~-~v~f~kVd~d~-~~l~~~~--------~I~~~PTll~~~-~G~~ 197 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSS-L--ICLAAEYP-MVKFCKIKASN-TGAGDRF--------SSDVLPTLLVYK-GGEL 197 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHH-H--HHHHHHCT-TSEEEEEEHHH-HCCTTSS--------CTTTCSEEEEEE-TTEE
T ss_pred CCCEEEEEEECCCChHHHHHHHH-H--HHHHHHCC-CCEEEEEeCCc-HHHHHHC--------CCCCCCEEEEEE-CCEE
Confidence 48999999999999999999863 3 33554443 47888888875 5544433 788999999886 8988
Q ss_pred ecc
Q 003115 217 LMG 219 (846)
Q Consensus 217 ~~~ 219 (846)
+..
T Consensus 198 v~~ 200 (245)
T 1a0r_P 198 LSN 200 (245)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 170
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.01 E-value=1.8e-05 Score=78.50 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=50.5
Q ss_pred cCC-CEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCC-------CccHHHHHHHH-------------
Q 003115 137 RDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------RPDVDKVYMTY------------- 194 (846)
Q Consensus 137 e~K-pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee-------~p~~~~~y~~~------------- 194 (846)
.|| ||+|.|+++||+.|+.+... + .++.+.+. +++..|.|+.+. .++..+.|.+.
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~ 120 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHE-L--VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ 120 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHH-H--HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence 577 59999999999999977642 2 22334343 346666666531 22221222110
Q ss_pred -HHHhcCCCCCCcEEEECCCCceeccc
Q 003115 195 -VQALYGGGGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 195 -~~~~~g~~G~P~~v~l~pdg~~~~~~ 220 (846)
+....++.++|+++|+|++|++++.+
T Consensus 121 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp HHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred HHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence 11123778899999999999998753
No 171
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.01 E-value=7.3e-06 Score=72.47 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=43.8
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.|+. +.+.+...+ .++||+++.|++.+.| |.. +|+.++ .+|+++.
T Consensus 3 vv~f~a~~C~~C~~~~~-------~L~~~~~~~-~~~vdid~~~~l~~~~--------g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVE-------ALAQARAGA-FFSVFIDDDAALESAY--------GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHTTCCC-EEEEECTTCHHHHHHH--------TTT-CSEEEC--TTCCEEE
T ss_pred EEEEECCCCchHHHHHH-------HHHHHHHhh-eEEEECCCCHHHHHHh--------CCC-cCeEEE--ECCEEEe
Confidence 57799999999999885 223333333 3789999999877766 665 999887 7899885
No 172
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.01 E-value=3.7e-06 Score=96.08 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=56.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--------CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--------~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
..+|||+|+|+++||+.|+.|.... .++++.+.. .++.++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y--------~V~~~PTl 108 (470)
T 3qcp_A 40 APLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY--------DINFVPRL 108 (470)
T ss_dssp GGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT--------TCCSSCEE
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc--------CCCccCeE
Confidence 4579999999999999999998633 455655541 4899999999988877766 88999999
Q ss_pred EEECCCCc
Q 003115 208 VFLSPDLK 215 (846)
Q Consensus 208 v~l~pdg~ 215 (846)
+|++++|.
T Consensus 109 ilf~~gg~ 116 (470)
T 3qcp_A 109 FFFYPRDS 116 (470)
T ss_dssp EEEEESSC
T ss_pred EEEECCCc
Confidence 99987764
No 173
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.98 E-value=6.1e-06 Score=94.01 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=61.1
Q ss_pred HHHHHhcC---CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 131 FAEARKRD---VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 131 l~~Ak~e~---KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
+..+-+++ ++++|.|+++||+.|+.|..+. .++++.+...+..++||.++.+++.+.| |+.|+|+.
T Consensus 11 f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl 79 (481)
T 3f8u_A 11 FESRISDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTANTNTCNKY--------GVSGYPTL 79 (481)
T ss_dssp HHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTTCHHHHHHT--------TCCEESEE
T ss_pred HHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCCCHHHHHhc--------CCCCCCEE
Confidence 44444555 9999999999999999999743 6778888777888999999988887766 88999999
Q ss_pred EEECCCCcee
Q 003115 208 VFLSPDLKPL 217 (846)
Q Consensus 208 v~l~pdg~~~ 217 (846)
+|+ .+|+.+
T Consensus 80 ~~~-~~g~~~ 88 (481)
T 3f8u_A 80 KIF-RDGEEA 88 (481)
T ss_dssp EEE-ETTEEE
T ss_pred EEE-eCCcee
Confidence 888 567654
No 174
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.98 E-value=8.7e-06 Score=93.50 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=54.0
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
...+|||+|.|+++||+.|+.|.... .++++.+. .+++.+++|.+..+.. + | ++.|+|+++|+
T Consensus 373 ~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~--------~v~~~Pt~~~~- 438 (504)
T 2b5e_A 373 NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTENDVR-G-V--------VIEGYPTIVLY- 438 (504)
T ss_dssp HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCCCS-S-C--------CCSSSSEEEEE-
T ss_pred ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccccc-c-C--------CceecCeEEEE-
Confidence 56799999999999999999998743 35565554 3799999999876543 2 4 78899999999
Q ss_pred CCCce
Q 003115 212 PDLKP 216 (846)
Q Consensus 212 pdg~~ 216 (846)
++|+.
T Consensus 439 ~~G~~ 443 (504)
T 2b5e_A 439 PGGKK 443 (504)
T ss_dssp CCTTS
T ss_pred eCCce
Confidence 78865
No 175
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.95 E-value=1e-05 Score=89.51 Aligned_cols=78 Identities=15% Similarity=-0.061 Sum_probs=57.9
Q ss_pred HHHHHhcCCCEEEEEeccCChhhhhhhhccc---CCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~~wC~wC~~me~etf---~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
+..+-+++++|+|.|+++||+.|..+.+-.+ .=.++++.+.. ++..++||.++.+++.+.| |+.|+|+
T Consensus 23 f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~V~~~PT 94 (367)
T 3us3_A 23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL--------GLTEEDS 94 (367)
T ss_dssp HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHH--------TCCSTTE
T ss_pred HHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHc--------CCCcCce
Confidence 4444466899999999999998744332111 11345666654 5899999999999888777 8999999
Q ss_pred EEEECCCCcee
Q 003115 207 SVFLSPDLKPL 217 (846)
Q Consensus 207 ~v~l~pdg~~~ 217 (846)
++|+. +|+++
T Consensus 95 l~~f~-~G~~~ 104 (367)
T 3us3_A 95 IYVFK-EDEVI 104 (367)
T ss_dssp EEEEE-TTEEE
T ss_pred EEEEE-CCcEE
Confidence 99997 57775
No 176
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.94 E-value=1.4e-05 Score=88.24 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-----CccHHHHHHHH------------
Q 003115 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-----RPDVDKVYMTY------------ 194 (846)
Q Consensus 133 ~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-----~p~~~~~y~~~------------ 194 (846)
.+.-.||+|+|+|+++||+.|+.+.... .++++.+.+ ++..|.|+.++ .++..+.|.+.
T Consensus 77 Lsdl~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~ 153 (352)
T 2hyx_A 77 LKSLRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNN 153 (352)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTT
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCc
Confidence 3444699999999999999999886532 234555543 58888887643 22222222111
Q ss_pred --HHHhcCCCCCCcEEEECCCCceecc
Q 003115 195 --VQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 195 --~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
+....++.++|+++|+|++|+++..
T Consensus 154 ~~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 154 YATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp SHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred HHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 1112377899999999999999875
No 177
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.94 E-value=3.3e-05 Score=74.61 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=51.3
Q ss_pred cCCC-EEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003115 137 RDVP-IFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (846)
Q Consensus 137 e~Kp-I~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~--------------~~~~~ 199 (846)
.||+ |+|.|+ ++||+.|+.+.... .++.+.+.+ ++..|-|+.+. ++..+.|.+. +....
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDD-INSHKRFKEKYKLPFILVSDPDKKIRELY 102 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCC-HHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCCceEEECCcHHHHHHc
Confidence 4787 999999 99999999976532 233444433 46666666652 3322222211 11123
Q ss_pred CCCC----CCcEEEECCCCceecc
Q 003115 200 GGGG----WPLSVFLSPDLKPLMG 219 (846)
Q Consensus 200 g~~G----~P~~v~l~pdg~~~~~ 219 (846)
|..| .|+++++|++|+++..
T Consensus 103 ~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 103 GAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp TCCCSSSCCCEEEEECTTSBEEEE
T ss_pred CCCCcCcccceEEEECCCCEEEEE
Confidence 6677 9999999999999865
No 178
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=97.93 E-value=1.7e-05 Score=82.80 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=56.4
Q ss_pred HHHHHHHHhc-CCCEEEEEeccCChhhhhhhhcccCCHHHHHHH---h-cCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---N-DWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 128 ~eAl~~Ak~e-~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~l---n-~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
++.++..++. ++++++.|+++||++|+.+... + .+++... + .++..++||.++.+++.+.| ++.
T Consensus 127 ~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~V~ 195 (243)
T 2hls_A 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLL-A--HMFAYEAWKQGNPVILSEAVEAYENPDIADKY--------GVM 195 (243)
T ss_dssp HHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEETTTCHHHHHHT--------TCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHH-H--HHHHHHcccccCCcEEEEEEECccCHHHHHHc--------CCe
Confidence 4455555544 5666889999999999998763 3 2344444 1 46888899999988876665 788
Q ss_pred CCCcEEEECCCCceec
Q 003115 203 GWPLSVFLSPDLKPLM 218 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~ 218 (846)
|+|+++| +|++++
T Consensus 196 ~vPt~~i---~G~~~~ 208 (243)
T 2hls_A 196 SVPSIAI---NGYLVF 208 (243)
T ss_dssp SSSEEEE---TTEEEE
T ss_pred eeCeEEE---CCEEEE
Confidence 9999988 788763
No 179
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.92 E-value=2.3e-05 Score=75.71 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=50.2
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHh-----cCeEEEEEcCCC---CccHHHHHHH--------------
Q 003115 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN-----DWFVSIKVDREE---RPDVDKVYMT-------------- 193 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln-----~~FV~vkvD~ee---~p~~~~~y~~-------------- 193 (846)
.||+|+|.|+++||+. |+.+... + .++.+.+. +++..|-|..+. .|+..+.|.+
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEK-L--VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHH-H--HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHH-H--HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4899999999999998 9987642 2 24455553 355555554432 3332222221
Q ss_pred ----HHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003115 194 ----YVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (846)
Q Consensus 194 ----~~~~~~g~~G~P---------------~~v~l~pdg~~~~~ 219 (846)
..+ ..|+.+.| +++++|++|+++..
T Consensus 102 ~~~~~~~-~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 102 QVAQASH-SYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HHHHHHH-HSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHHHHHH-HhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 122 23666677 89999999999875
No 180
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=97.89 E-value=3.4e-05 Score=78.92 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=51.8
Q ss_pred cCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-------CCccHHHHHHHH-------------
Q 003115 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYMTY------------- 194 (846)
Q Consensus 137 e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-------e~p~~~~~y~~~------------- 194 (846)
.||+ |+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+ +.++..+.|.+.
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~ 133 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIREA-L--AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ 133 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHHH-H--HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC
T ss_pred CCCCeEEEEEECCCCccHHHHHHH-H--HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc
Confidence 4786 9999999999999876642 2 334444443 3666666653 122222222111
Q ss_pred -HHHhcCCCCCCcEEEECCCCceecccc
Q 003115 195 -VQALYGGGGWPLSVFLSPDLKPLMGGT 221 (846)
Q Consensus 195 -~~~~~g~~G~P~~v~l~pdg~~~~~~t 221 (846)
+....++.++|+++|+|++|++++.+.
T Consensus 134 ~~~~~~~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 134 SVAKAYGAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp HHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred HHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence 111237788999999999999987643
No 181
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=97.88 E-value=0.00028 Score=79.49 Aligned_cols=274 Identities=12% Similarity=0.116 Sum_probs=152.9
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHh
Q 003115 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDIL 457 (846)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L 457 (846)
||+ .+-++.+|+..|++++++.|++.|.++++.+.+.+.+..-+|+. |..|..| ....+...+
T Consensus 73 lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~--------------G~aG~l~--~l~~ly~~~ 136 (411)
T 3e6u_A 73 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC--------------GDAGPLA--VAAVLYHKM 136 (411)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTT--------------STHHHHH--HHHHHHHHT
T ss_pred eeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCcccc--------------CcHHHHH--HHHHHHHHh
Confidence 455 77889999999999999999999999999999877543333443 3345444 344566666
Q ss_pred hhh--H-HHHHHHhcc---cCCCCcCCCCCCCCCCCCCCcc-eeeccCCchHHHHHcCC---CHHHHHHHHHHHHH---H
Q 003115 458 GEH--A-ILFKEHYYL---KPTGNCDLSRMSDPHNEFKGKN-VLIELNDSSASASKLGM---PLEKYLNILGECRR---K 524 (846)
Q Consensus 458 ~~~--~-~~~~~~f~i---~~~Gn~e~~~~~d~~g~feg~n-vL~~~~~~~~~a~~~g~---~~~~l~~~l~~~r~---~ 524 (846)
++. + +.+.+.-.+ ..+...| -.-|.. ++... -.+.+..+- ....+.+..+.+.+ .
T Consensus 137 g~~~~a~~~~~~l~~~~~~~~~~~~d---------ll~G~AG~l~aL---l~L~~~~~~~~~~~~~i~~i~~~ii~~g~~ 204 (411)
T 3e6u_A 137 NNEKQAEDCITRLIHLNKIDPHAPNE---------MLYGRIGYIYAL---LFVNKNFGVEKIPQSHIQQICETILTSGEN 204 (411)
T ss_dssp TCHHHHHHHHHHHHGGGGGCTTCCSS---------TTTSHHHHHHHH---HHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCChh---------hhcCcHHHHHHH---HHHHHHcCCccchHHHHHHHHHHHHHHHHH
Confidence 632 1 222222222 2211111 012331 11000 001111221 11112222222221 1
Q ss_pred HHhhhcC-CCCCC-C--Cchhhhch-HHH--HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003115 525 LFDVRSK-RPRPH-L--DDKVIVSW-NGL--VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 597 (846)
Q Consensus 525 L~~~R~~-R~~P~-~--DdKilt~W-Ngl--mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~ 597 (846)
+...+.. -..|. . .++..++| +|. .+.+|+++++.+++ +++++.++++.+++.+...
T Consensus 205 ~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~----------------~~~~~~i~~~l~~l~~~~~ 268 (411)
T 3e6u_A 205 LARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQ----------------GKLHSLVKPSVDYVCQLKF 268 (411)
T ss_dssp HHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCH----------------HHHHHTHHHHHHHHHHTCC
T ss_pred HHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHhhc
Confidence 1111110 01221 0 11222221 122 25578788777776 7899999999999998764
Q ss_pred ccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCccccc
Q 003115 598 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 677 (846)
Q Consensus 598 d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R 677 (846)
. +|.+.....++......+..+-+=.+.+++.++++++|++|++.|++..+.+.+. | +. . .
T Consensus 269 ~--~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------g-~~-~--~------- 329 (411)
T 3e6u_A 269 P--SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQY------G-LL-K--K------- 329 (411)
T ss_dssp T--TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------C-SB-T--T-------
T ss_pred c--CCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------C-cc-C--C-------
Confidence 3 2433211112222234566677778889999999999999999999888766542 1 00 0 0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003115 678 VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVF 723 (846)
Q Consensus 678 ~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~ 723 (846)
+...=-|.+=.+..|+++++.|++ ++|+++|.+++..+
T Consensus 330 -----~~~lChG~aG~~~~ll~~~~~t~~---~~~~~~A~~~~~~~ 367 (411)
T 3e6u_A 330 -----GYGLCHGSAGNAYAFLTLYNLTQD---MKYLYRACKFAEWC 367 (411)
T ss_dssp -----CSCSTTSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred -----CCceecChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 112334556667789999999986 88999998776653
No 182
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.88 E-value=1.6e-05 Score=96.16 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=64.8
Q ss_pred HHHHH-HHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~-~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.+. ...+.+|||+|.|+++||+.|+.|.... .++++.+..+++.++||.++.+++.+.| ++.|+|+
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 732 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 732 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCCHHHHHhc--------CCCcCCE
Confidence 45553 4667899999999999999999988643 5677777668999999999988876665 8889999
Q ss_pred EEEECCCCceec
Q 003115 207 SVFLSPDLKPLM 218 (846)
Q Consensus 207 ~v~l~pdg~~~~ 218 (846)
++|+ ++|+.+.
T Consensus 733 ~~~~-~~g~~~~ 743 (780)
T 3apo_A 733 VKLY-QYERAKK 743 (780)
T ss_dssp EEEE-EEETTTT
T ss_pred EEEE-cCCCccc
Confidence 9999 8888764
No 183
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.85 E-value=1.2e-05 Score=77.20 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=50.5
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHhc-----CeEEEEEcCCC---CccHHHHHHH--------------
Q 003115 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND-----WFVSIKVDREE---RPDVDKVYMT-------------- 193 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln~-----~FV~vkvD~ee---~p~~~~~y~~-------------- 193 (846)
.||+|+|.|+++||+. |+.+... + .++.+.+.+ ++..|-|..+. .|+..+.|.+
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEK-M--IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHH-H--HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHH-H--HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4899999999999998 9987642 2 344555543 55544444432 2332222221
Q ss_pred ---HHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003115 194 ---YVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (846)
Q Consensus 194 ---~~~~~~g~~G~P---------------~~v~l~pdg~~~~~ 219 (846)
.+....|+.+.| +++++|++|+++..
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 011223667788 89999999999875
No 184
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.83 E-value=5.4e-05 Score=75.37 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=50.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHH-HHH------------
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYM-TYV------------ 195 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~p~~~~~y~-~~~------------ 195 (846)
.||+|+|.|+++||+.|..+... + .++.+.+.+ ++..|-|+.++ .++..+.|. +..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHH-H--HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 58999999999999999775532 2 234444443 46666666542 222222332 110
Q ss_pred -------------HHhcCCCCCC------cEEEECCCCceecc
Q 003115 196 -------------QALYGGGGWP------LSVFLSPDLKPLMG 219 (846)
Q Consensus 196 -------------~~~~g~~G~P------~~v~l~pdg~~~~~ 219 (846)
....+..|.| +++++|++|+++..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 0112566788 99999999999875
No 185
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.83 E-value=1.2e-05 Score=88.04 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=54.0
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
....+|+++|.|+++||+.|+.|.... .++++.+.. +++.++||.+..+. +.| ++.|+|+++|+.
T Consensus 263 ~~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~Pt~~~~~ 329 (361)
T 3uem_A 263 AFDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANEV--EAV--------KVHSFPTLKFFP 329 (361)
T ss_dssp HTCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCBC--SSC--------CCCSSSEEEEEC
T ss_pred cccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccch--hhc--------CCcccCeEEEEE
Confidence 346799999999999999999998633 456666654 49999999987761 222 788999999997
Q ss_pred CC-Cc
Q 003115 212 PD-LK 215 (846)
Q Consensus 212 pd-g~ 215 (846)
++ |+
T Consensus 330 ~~~~~ 334 (361)
T 3uem_A 330 ASADR 334 (361)
T ss_dssp SSSSC
T ss_pred CCCCc
Confidence 65 44
No 186
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.83 E-value=6.2e-05 Score=72.46 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=30.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~vs~d 74 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAE-M--NQLYEKYKDQGLEILAFPCN 74 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEEeccCCccHHHHHH-H--HHHHHHhccCCEEEEEEECC
Confidence 58999999999999999986542 2 234444443 4666666654
No 187
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.82 E-value=2e-05 Score=95.36 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=60.6
Q ss_pred chHHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003115 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (846)
Q Consensus 126 ~~~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P 205 (846)
-..+.+..+.+++++++|.|+++||+.|+.|..+. .++++.+...+..++||.++.+++.+.| ++.|+|
T Consensus 121 l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 189 (780)
T 3apo_A 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYP 189 (780)
T ss_dssp CCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCSSCC----------------C
T ss_pred echHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCcHHHHHHc--------CCceee
Confidence 34677888889999999999999999999999743 5678888777999999999999888776 788999
Q ss_pred cEEEECCCCcee
Q 003115 206 LSVFLSPDLKPL 217 (846)
Q Consensus 206 ~~v~l~pdg~~~ 217 (846)
+++|+ .+|+.+
T Consensus 190 t~~~~-~~g~~~ 200 (780)
T 3apo_A 190 SLFIF-RSGMAA 200 (780)
T ss_dssp EEEEE-CTTSCC
T ss_pred eEEEE-eCCcEe
Confidence 98888 566653
No 188
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.81 E-value=5.3e-06 Score=85.55 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
+|+|+|.|+++||+.|+.|... | .++++.+ .++..++||.+ .|++...| ++.++|+++|+. +|+++
T Consensus 120 ~k~vvV~F~a~wC~~C~~l~p~-l--~~la~~~-~~v~f~~vd~~-~~~l~~~~--------~i~~~PTl~~~~-~G~~v 185 (217)
T 2trc_P 120 VTTIVVNIYEDGVRGCDALNSS-L--ECLAAEY-PMVKFCKIRAS-NTGAGDRF--------SSDVLPTLLVYK-GGELI 185 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHHH-H--HHHHTTC-TTSEEEEEEHH-HHTCSTTS--------CGGGCSEEEEEE-TTEEE
T ss_pred CcEEEEEEECCCCccHHHHHHH-H--HHHHHHC-CCeEEEEEECC-cHHHHHHC--------CCCCCCEEEEEE-CCEEE
Confidence 5999999999999999999852 2 2333333 25788888887 55555444 778999999995 89887
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 186 ~~ 187 (217)
T 2trc_P 186 SN 187 (217)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 189
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=97.80 E-value=4e-05 Score=72.17 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC--CCc
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG--WPL 206 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G--~P~ 206 (846)
+-+++.-+.++||+|+|+++ |..|+.|.. +| .++++.+...+..++||.++.|++.+.| |..+ +|+
T Consensus 14 ~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p-~l--~~~A~~~~gk~~f~~vd~d~~~~~a~~~--------gi~~~~iPt 81 (133)
T 2djk_A 14 ETYSDYMSAGIPLAYIFAET-AEERKELSD-KL--KPIAEAQRGVINFGTIDAKAFGAHAGNL--------NLKTDKFPA 81 (133)
T ss_dssp HHHHHHHHTTSCEEEEECSC-SSSHHHHHH-HH--HHHHHSSTTTSEEEEECTTTTGGGTTTT--------TCCSSSSSE
T ss_pred HHHHHHhcCCCCEEEEEecC-hhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHHhHHHHHHc--------CCCcccCCE
Confidence 44444456789999999999 899998775 44 4566666667899999999999887666 7778 999
Q ss_pred EEEECC-CCcee
Q 003115 207 SVFLSP-DLKPL 217 (846)
Q Consensus 207 ~v~l~p-dg~~~ 217 (846)
.+++.. +|+..
T Consensus 82 l~i~~~~~g~~~ 93 (133)
T 2djk_A 82 FAIQEVAKNQKF 93 (133)
T ss_dssp EEEECTTTCCBC
T ss_pred EEEEecCcCccc
Confidence 999985 66663
No 190
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.75 E-value=4e-05 Score=74.74 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=46.9
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC-------CCccHHHHHH----------------
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYM---------------- 192 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e-------e~p~~~~~y~---------------- 192 (846)
.||+|+|.|+++||+.|+ +.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~-~l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYK-EL--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHH-HH--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHH-HH--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 589999999999999999 432 22 234444433 4666666542 1121112222
Q ss_pred ----------HHHHHhcCCCCCC------cEEEECCCCceecc
Q 003115 193 ----------TYVQALYGGGGWP------LSVFLSPDLKPLMG 219 (846)
Q Consensus 193 ----------~~~~~~~g~~G~P------~~v~l~pdg~~~~~ 219 (846)
.......+..|+| +++++|++|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 1111123677899 99999999999875
No 191
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.72 E-value=9.2e-05 Score=72.92 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=49.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCC-------CccHHHHHHHH-HHH---------h
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY-VQA---------L 198 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee-------~p~~~~~y~~~-~~~---------~ 198 (846)
.||+|+|.|+++||+.|+.+... + .++.+.+.+ .+..|-|..+. .++..+.|.+. ... .
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLG-L--KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI 113 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEEecCCCCcHHHHHH-H--HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence 58999999999999999986542 2 234444443 47776665432 22222223221 000 0
Q ss_pred c-------------CCCCCCc----EEEECCCCceecc
Q 003115 199 Y-------------GGGGWPL----SVFLSPDLKPLMG 219 (846)
Q Consensus 199 ~-------------g~~G~P~----~v~l~pdg~~~~~ 219 (846)
. ..++.|+ ++++|++|+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp SSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred cCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence 0 1235788 9999999999865
No 192
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=97.70 E-value=0.00022 Score=83.07 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=63.7
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCCCCCc
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKAPGFL 619 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~---dg~~~~~~~l 619 (846)
|++++.++.|||.|++++++- +..| ..++|+.|+++.+|+.++... ++.... .|.-...++.
T Consensus 242 t~~~~~~AAalA~as~vf~~~--D~~y--------A~~~L~~A~~~~~fa~~~~~~-----~~~~~~~~~~~~Y~~~~~~ 306 (537)
T 3gzk_A 242 YAATATFCAAMAHAALVYRPF--DPAL--------SSCCADAARRAYAWLGAHEMQ-----PFHNPDGILTGEYGDAELR 306 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHTSCCC-----CCCCCTTCCSCCCCCSCCH
T ss_pred CcHHHHHHHHHHHHHHhhccc--CHHH--------HHHHHHHHHHHHHHHHhcccc-----cccCCcccccCCcCCCccc
Confidence 568999999999999999862 1122 167999999999999876421 111000 0000113455
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~ 650 (846)
|+ +++|.++||++|||+.||+.|++...
T Consensus 307 De---l~wAA~~Ly~aTgd~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 307 DE---LLWASCALLRMTGDSAWARVCEPLLD 334 (537)
T ss_dssp HH---HHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Confidence 55 78899999999999999999998764
No 193
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.66 E-value=7.7e-05 Score=74.56 Aligned_cols=79 Identities=8% Similarity=-0.058 Sum_probs=49.7
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH------------------HH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~------------------~~ 196 (846)
.||+|+|.|+ ++||+.|+.+... +. ++.+.+.+ ++..|-|+.+. ++..+.|.+. +.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAA-FS--KLNDEFEDRDAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELS 119 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHH-HH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHH-HH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHH
Confidence 4899999999 9999999986642 21 23333433 46566665543 2222222111 11
Q ss_pred HhcCCC-----CCCcEEEECCCCceecc
Q 003115 197 ALYGGG-----GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~-----G~P~~v~l~pdg~~~~~ 219 (846)
...+.. ++|+++|+|++|++++.
T Consensus 120 ~~~~v~~~~g~~~P~~~lid~~G~i~~~ 147 (195)
T 2bmx_A 120 QAAGVLNADGVADRVTFIVDPNNEIQFV 147 (195)
T ss_dssp HHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred HHhCCcccCCCccceEEEEcCCCeEEEE
Confidence 112566 89999999999999875
No 194
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.65 E-value=0.00012 Score=70.09 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=54.8
Q ss_pred cCC-CEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH----------------HHHH
Q 003115 137 RDV-PIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQA 197 (846)
Q Consensus 137 e~K-pI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~----------------~~~~ 197 (846)
.|| +|+|.|+ ++||+.|+.+... ++ ++.+.+. +++..|-|+.+. ++..+.|.+ .+..
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~~~-l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 109 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGELDQ-LR--DHLPEFENDDSAALAISVGP-PPTHKIWATQSGFTFPLLSDFWPHGAVSQ 109 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHHHH-HH--HTGGGTSSSSEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTTTTHHHH
T ss_pred cCCCCEEEEEECCCCCCchHHHHHH-HH--HHHHHHHHCCcEEEEEeCCC-HHHHHHHHHhcCCCceEEecCCcChHHHH
Confidence 466 9999997 9999999976532 11 1222222 245555555542 221111210 0111
Q ss_pred hcCCC----CCC--cEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003115 198 LYGGG----GWP--LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 198 ~~g~~----G~P--~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
..|.. |+| +++++|++|++++.. +..+.+ +.+.++++.+.
T Consensus 110 ~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~-----~~~~~l~~~l~ 156 (160)
T 1xvw_A 110 AYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEV-----RDQRLWTDALA 156 (160)
T ss_dssp HTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCC-----CCHHHHHHHHH
T ss_pred HcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 12555 889 999999999998753 333322 34666666554
No 195
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.65 E-value=0.00018 Score=69.11 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.4
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|+.+.. .+ .++.+.+.+ ++..|.|+.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~-~l--~~l~~~~~~~~~~vv~v~~d 73 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYR-QL--QEMHTRLVGKGLRILAFPCN 73 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeeccCCchHHHHH-HH--HHHHHHhhcCCeEEEEEECC
Confidence 5899999999999999987553 22 234444433 4666666654
No 196
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=97.64 E-value=2.1e-05 Score=73.42 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=48.9
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
++||+|+|+++||+.|+.|.. .| .++++... +...+|||.++.+ +.| ++.+.|+.+++- +|+++
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p-~l--~~la~~~~-~v~f~kvd~d~~~---~~~--------~v~~~PT~~~fk-~G~~v 86 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQ-HL--SLLARKFP-ETKFVKAIVNSCI---QHY--------HDNCLPTIFVYK-NGQIE 86 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHH-HH--HHHHHHCT-TSEEEEEEGGGTS---TTC--------CGGGCSEEEEEE-TTEEE
T ss_pred CCeEEEEEeCCCChHHHHHHH-HH--HHHHHHCC-CCEEEEEEhHHhH---HHC--------CCCCCCEEEEEE-CCEEE
Confidence 459999999999999999995 33 24454443 4677789988642 222 778999999885 78887
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
..
T Consensus 87 ~~ 88 (118)
T 3evi_A 87 AK 88 (118)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 197
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.62 E-value=2.4e-05 Score=66.90 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=42.1
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e-e~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~ 217 (846)
++.|+++||++|+.|... +.+++++ .|..++||.+ +.+++.+.| |+.+.|++++ +|+.+
T Consensus 4 ~~~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------gv~~vPt~~i---~g~~~ 66 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQA------VANAIDPSKYTVEIVHLGTDKARIAEAEKA--------GVKSVPALVI---DGAAF 66 (80)
T ss_dssp EEEEEECSCHHHHHHHHH------HHHHSCTTTEEEEEEETTTCSSTHHHHHHH--------TCCEEEEEEE---TTEEE
T ss_pred eEEEeCCCCCchHHHHHH------HHHHHHhcCCeEEEEEecCChhhHHHHHHc--------CCCcCCEEEE---CCEEE
Confidence 445889999999999852 3344443 4777777765 455544444 7889999877 88876
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
+.
T Consensus 67 ~~ 68 (80)
T 2k8s_A 67 HI 68 (80)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 198
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.60 E-value=0.00011 Score=72.75 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=49.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHH------------------HH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~------------------~~ 196 (846)
.||+++|.|+ ++||+.|+.+.. .++ ++.+.+.+ ++..|-|+.+. ++..+.|.+. +.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 105 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELE-DVQ--KEYAELKKLGVEVYSVSTDT-HFVHKAWHENSPAVGSIEYIMIGDPSQTIS 105 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHH-HHH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHHhccccCCCceEEECCchHHH
Confidence 5899999999 999999997654 222 23444432 46666666553 2211222110 11
Q ss_pred HhcCCC------CCCcEEEECCCCceecc
Q 003115 197 ALYGGG------GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~------G~P~~v~l~pdg~~~~~ 219 (846)
...|.. ++|+++++|++|+++..
T Consensus 106 ~~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 106 RQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 112555 89999999999999875
No 199
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=97.58 E-value=0.00039 Score=78.83 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 003115 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leD 621 (846)
+-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |.+.....++.. ...++.+
T Consensus 150 ~~a~~~AAalA~as~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~Y~ss~~~D- 213 (433)
T 1ks8_A 150 DLAGETAAALAAASIVFRNV--DGTY--------SNNLLTHARQLFDFANNYR-----GKYSDSITDARNFYASADYRD- 213 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CCHHHHSGGGGGTSCCCCTHH-
T ss_pred HHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHCC-----CcccCCCCcCCCCCCCCCccc-
Confidence 34588899999999999762 1223 2678999999999998752 111100000000 0123333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 701 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~ 701 (846)
.+++|.+.||.+|||+.|++.|++....+.. ....++|.+ |+. . +...+.|+
T Consensus 214 --E~~WAAa~Ly~aTgd~~Yl~~~~~~~~~~~~---~~~~~~~~W----------------d~~-----~--~g~~~lla 265 (433)
T 1ks8_A 214 --ELVWAAAWLYRATNDNTYLNTAESLYDEFGL---QNWGGGLNW----------------DSK-----V--SGVQVLLA 265 (433)
T ss_dssp --HHHHHHHHHHHHHCCHHHHHHHHHHHHHTTG---GGSCCCCCS----------------SCC-----H--HHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc---CcCcCCcCc----------------cch-----h--hHHHHHHh
Confidence 4588999999999999999999986543210 000111111 111 0 11223356
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 003115 702 SIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 733 (846)
Q Consensus 702 ~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~ 733 (846)
.+++. ..|++.++..+..+...+...|.+
T Consensus 266 ~~~~~---~~~~~~~~~~~~~~~~~~~~tp~G 294 (433)
T 1ks8_A 266 KLTNK---QAYKDTVQSYVNYLINNQQKTPKG 294 (433)
T ss_dssp HHHCC---HHHHHHHHHHHHHHHHTSCBCTTS
T ss_pred hccCh---HHHHHHHHHHHHHHHhcCCcCCCC
Confidence 66654 778888888877776655555554
No 200
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.57 E-value=7.2e-05 Score=74.35 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=28.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ 181 (846)
.||+|+|+|+++||+.|..+... + .++.+.+.+ ++..|-|..
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~~~vi~is~ 87 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYET-A--TTLYNKYKSQGFTVLAFPS 87 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHH-H--HHHHHHHGGGTCEEEEEEB
T ss_pred CCCEEEEEEecCCCCCcHHHHHH-H--HHHHHHhhhCCeEEEEEEC
Confidence 58999999999999999986531 1 233444433 466665543
No 201
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.55 E-value=6.6e-05 Score=69.04 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=46.0
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
.++++.|+++||++|+.++. .+ .++++.. .+-..+||+++.|++...| |.. +|+.+++. +|+++.
T Consensus 29 m~~vv~y~~~~C~~C~~a~~-~L--~~l~~e~--~i~~~~vDId~d~~l~~~y--------gv~-VP~l~~~~-dG~~v~ 93 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIA-SL--RVLQKKS--WFELEVINIDGNEHLTRLY--------NDR-VPVLFAVN-EDKELC 93 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHH-HH--HHHHHHS--CCCCEEEETTTCHHHHHHS--------TTS-CSEEEETT-TTEEEE
T ss_pred ccEEEEEeCCCChhHHHHHH-HH--HHHHHhc--CCeEEEEECCCCHHHHHHh--------CCC-CceEEEEE-CCEEEE
Confidence 36789999999999999885 22 2222222 3666788988888876655 554 99987654 678774
No 202
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=97.53 E-value=0.00015 Score=76.35 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHHHHhcCCCEEEEEe--ccCChhhhhhhhcccCCHHHHHHHh---cCeEEEEEcCCC-----CccHHHHHHHHHHHhcC
Q 003115 131 FAEARKRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g--~~wC~wC~~me~etf~d~eVa~~ln---~~FV~vkvD~ee-----~p~~~~~y~~~~~~~~g 200 (846)
|......+++|||+|+ ++||+ |.. +| .++++.+. .+++.++||.++ .+++.+.| +
T Consensus 26 F~~vi~~~~~vlV~Fy~~ApWCg----l~P-~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~--------~ 90 (248)
T 2c0g_A 26 FEKTVERFPYSVVKFDIASPYGE----KHE-AF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY--------K 90 (248)
T ss_dssp HHHHHTTSSEEEEEEEESSCCSH----HHH-HH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT--------T
T ss_pred HHHHHhcCCCEEEEEECCCCCCc----cHH-HH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh--------C
Confidence 3333467899999999 99998 543 34 35666663 478999999887 77777666 8
Q ss_pred CC--CCCcEEEECCCCc
Q 003115 201 GG--GWPLSVFLSPDLK 215 (846)
Q Consensus 201 ~~--G~P~~v~l~pdg~ 215 (846)
+. |+||++|+. |+
T Consensus 91 V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 91 VDDKNFPSIFLFK--GN 105 (248)
T ss_dssp CCTTSCCEEEEES--SS
T ss_pred CCcCCCCeEEEEe--CC
Confidence 88 999999997 66
No 203
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.51 E-value=0.00037 Score=71.01 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=49.7
Q ss_pred hcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHH--hcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003115 136 KRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (846)
Q Consensus 136 ~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~l--n~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~ 211 (846)
+..+||+|.+++++ |+||..+..-.=.=.++++.+ ......++||.++.+++.+.| |+.|+|+.+|+.
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~~ 89 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKY--------GVDRVPTIVIEG 89 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHT--------TCCBSSEEEEES
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHc--------CCCcCcEEEEEC
Confidence 56789988887554 777776664221113343334 557888999999999988777 889999999996
Q ss_pred C
Q 003115 212 P 212 (846)
Q Consensus 212 p 212 (846)
.
T Consensus 90 ~ 90 (229)
T 2ywm_A 90 D 90 (229)
T ss_dssp S
T ss_pred C
Confidence 3
No 204
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=97.51 E-value=0.0002 Score=69.23 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=53.5
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccH---------------HH-HHHHHHHHhc
Q 003115 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV---------------DK-VYMTYVQALY 199 (846)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~---------------~~-~y~~~~~~~~ 199 (846)
.||+++|.|+++| |+.|+.+.. .+ .++.+.+ +++..|-|+.+....+ .. .-....+. .
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~-~l--~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 117 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTR-RF--NEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA-F 117 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHH-HH--HHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH-T
T ss_pred CCCeEEEEEecCCCCCchHHHHH-HH--HHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH-h
Confidence 4899999999999 999998654 22 1233333 4454444444321000 00 00011111 2
Q ss_pred CCCC------CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 200 GGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 200 g~~G------~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
+..+ .|+++++|++|++++.....++. ..+.+.++++.|.+
T Consensus 118 ~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~---~~~~~~~l~~~l~~ 164 (167)
T 2jsy_A 118 GVYIKELRLLARSVFVLDENGKVVYAEYVSEAT---NHPNYEKPIEAAKA 164 (167)
T ss_dssp TCBBTTTCSBCCEEEEECTTSCEEEEEECSBTT---SCCCSHHHHHHHHH
T ss_pred CCccccCCceeeEEEEEcCCCcEEEEEecCCcC---CCCCHHHHHHHHHH
Confidence 4433 49999999999998753211111 12345566666554
No 205
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.49 E-value=0.00016 Score=73.28 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=49.2
Q ss_pred cCCCEEEEEecc-CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003115 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (846)
Q Consensus 137 e~KpI~l~~g~~-wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~G~P~~v~l~pd 213 (846)
+++.+++.|+++ ||++|+.|... ++ ++++. ..++..++||.++ .+++.+.| |+.++|+.+|+. +
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~~-~~--~la~~-~~~v~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~~-~ 87 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQL-VQ--ELSEL-TDKLSYEIVDFDTPEGKELAKRY--------RIDRAPATTITQ-D 87 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHH-HH--HHHTT-CTTEEEEEEETTSHHHHHHHHHT--------TCCSSSEEEEEE-T
T ss_pred CCCeEEEEEecCCCCchhHHHHHH-HH--HHHhh-CCceEEEEEeCCCcccHHHHHHc--------CCCcCceEEEEc-C
Confidence 344557899999 99999999863 32 35543 4578888999987 67766655 888999999984 4
Q ss_pred Cc
Q 003115 214 LK 215 (846)
Q Consensus 214 g~ 215 (846)
|+
T Consensus 88 g~ 89 (226)
T 1a8l_A 88 GK 89 (226)
T ss_dssp TB
T ss_pred Cc
Confidence 54
No 206
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.47 E-value=0.00013 Score=72.96 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=49.7
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~-------------------- 194 (846)
.||+|+|.|+ ++||+.|+.+... ++ ++.+.+. +++..|.|+.+. ++..+.|.+.
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIA-FD--KRVKDFHEKGFNVIGVSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITK 107 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTS
T ss_pred CCCcEEEEEECCCCCCchHHHHHH-HH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHhhhhcccccCceeEEEECCch
Confidence 5899999999 9999999976542 21 2223332 346666666553 2211212110
Q ss_pred -HHHhcCCC-----CCCcEEEECCCCceeccc
Q 003115 195 -VQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 195 -~~~~~g~~-----G~P~~v~l~pdg~~~~~~ 220 (846)
+....|.. ++|+++++|++|+++...
T Consensus 108 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 108 SISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp HHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 11123665 899999999999998753
No 207
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00011 Score=72.55 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=30.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|+.+... + .++.+.+. +.+..|.|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~-l--~~l~~~~~~~~v~vv~vs~d 91 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRA-L--QQLQRDLGPHHFNVLAFPCN 91 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeccCCCCcHHHHHH-H--HHHHHHhhcCCEEEEEEECc
Confidence 58999999999999999976542 2 23444443 34777777654
No 208
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.47 E-value=0.00015 Score=65.28 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=41.2
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
.++|+++.|+++||++|+.+.. .++. +.+++-..+||++ +.+++.+.| | .+.|+. |. +|
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~-~L~~------l~~~i~~~~vdi~~~~~~el~~~~--------g-~~vP~l-~~--~g 74 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKE-VLQP------YKDRFILQEVDITLPENSTWYERY--------K-FDIPVF-HL--NG 74 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHH-HTST------TSSSSEEEEEETTSSTTHHHHHHS--------S-SSCSEE-EE--SS
T ss_pred CCCCEEEEEeCCCCcchHHHHH-HHHH------hhhCCeEEEEECCCcchHHHHHHH--------C-CCCCEE-EE--CC
Confidence 4678899999999999999986 3441 1123555667776 444444333 7 899965 44 56
Q ss_pred cee
Q 003115 215 KPL 217 (846)
Q Consensus 215 ~~~ 217 (846)
+.+
T Consensus 75 ~~~ 77 (100)
T 1wjk_A 75 QFL 77 (100)
T ss_dssp SEE
T ss_pred EEE
Confidence 664
No 209
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=97.46 E-value=0.00013 Score=70.56 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=47.4
Q ss_pred cCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHhc---CeEEEEEcCC---CCccHHHHHHH----------------
Q 003115 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND---WFVSIKVDRE---ERPDVDKVYMT---------------- 193 (846)
Q Consensus 137 e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln~---~FV~vkvD~e---e~p~~~~~y~~---------------- 193 (846)
.||+|+|.|+++||+ .|..+..+. .++.+.+.+ ++..|-|+.+ +.++..+.|.+
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~ 108 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS 108 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 589999999999999 998755421 234444433 2555555443 12222222211
Q ss_pred -----HHH--Hh----------cCCCCCCcEEEECCCCceecc
Q 003115 194 -----YVQ--AL----------YGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 194 -----~~~--~~----------~g~~G~P~~v~l~pdg~~~~~ 219 (846)
... .+ .+..+.|+++|+|++|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 000 00 123568999999999999864
No 210
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=97.44 E-value=0.00048 Score=70.05 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=29.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|+.+.. .+ .++.+.+. +.+..|-|+.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p-~l--~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYT-QM--NELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEECCCCccHHHHHH-HH--HHHHHHccCCCeEEEEEECC
Confidence 5899999999999999998443 22 23444443 34777777654
No 211
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=97.42 E-value=0.0015 Score=74.31 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=60.1
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy 622 (846)
|+..+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--....+++| ...++.|
T Consensus 152 sd~a~~~AAalAaas~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~~g~~~~~~~Y--------~ss~~~D-- 211 (441)
T 1ia6_A 152 SDILSETSAALTLMYLNYKNI--DSAY--------ATKCLNAAKELYAMGKANQGVGNGQSFY--------QATSFGD-- 211 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSCSCCCCTTTS--------CCCCSHH--
T ss_pred cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCCCCCCCCCC--------CCCCchh--
Confidence 445689999999999999762 1223 2678999999999998763111111111 1123333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
.+++|.+.||.+|||..|++.|++..
T Consensus 212 -E~~WAAa~Ly~aTgd~~Yl~~a~~~~ 237 (441)
T 1ia6_A 212 -DLAWAATWLYTATNDSTYITDAEQFI 237 (441)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45688999999999999999998754
No 212
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=97.41 E-value=0.00049 Score=67.49 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=52.1
Q ss_pred cCCCEEEEEeccC-ChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHH----------------HHHHHHh
Q 003115 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------MTYVQAL 198 (846)
Q Consensus 137 e~KpI~l~~g~~w-C~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y----------------~~~~~~~ 198 (846)
.||+++|.|+++| |+.|+.+.. .+.++.+ +++..|-|+.+. |+..+.| ....+.
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~------~l~~l~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~- 114 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVR------TFDERAAASGATVLCVSKDL-PFAQKRFCGAEGTENVMPASAFRDSFGED- 114 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHH------HHHHHHHHTTCEEEEEESSC-HHHHTTCC------CEEEEECTTSSHHHH-
T ss_pred CCCEEEEEEEeCCCCchHHHHHH------HHHHHHhhcCCEEEEEECCC-HHHHHHHHHHcCCCCceEeeCCHHHHHHH-
Confidence 4899999999999 999987643 3333332 344444444431 1100000 001111
Q ss_pred cCCCCC---------CcEEEECCCCceecccc--ccCCCCCCCcccHHHHHHHHH
Q 003115 199 YGGGGW---------PLSVFLSPDLKPLMGGT--YFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 199 ~g~~G~---------P~~v~l~pdg~~~~~~t--Y~p~~~~~~~~~f~~~L~~i~ 242 (846)
.+..+. |+++++|++|++++... -... .+.+.++|+.+.
T Consensus 115 ~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~-----~~~~~~~l~~l~ 164 (175)
T 1xvq_A 115 YGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQ-----EPNYEAALAALG 164 (175)
T ss_dssp TTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTC-----CCCHHHHHHHHH
T ss_pred hCCcccccccCCcccceEEEECCCCeEEEEEECCCcCC-----CCCHHHHHHHHH
Confidence 244444 99999999999987531 1111 235666666554
No 213
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=97.40 E-value=0.00031 Score=70.62 Aligned_cols=80 Identities=9% Similarity=0.017 Sum_probs=48.7
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~--------------------- 193 (846)
.||+|+|.|+ ++||+.|..+... | .++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~-l--~~l~~~~~~~~v~vi~Is~D~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 110 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQ-F--SDRVKEFSDIGCEVLACSMDS-EYSHLAWTSIERKRGGLGQMNIPILADKTK 110 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCcCHHHHHH-H--HHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCCceeEEECCch
Confidence 4899999999 9999999986542 2 22333333 345555555542 111111111
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003115 194 YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 194 ~~~~~~g~~------G~P~~v~l~pdg~~~~~~ 220 (846)
.+....|.. ++|+++|+|++|++++..
T Consensus 111 ~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 111 CIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 011112555 899999999999998763
No 214
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=97.37 E-value=0.00039 Score=69.49 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=55.8
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~---------------------- 192 (846)
.||+|+|.|+ ++||+.|..+... + .++.+.+. +++..|-|+.+...+. +.|+
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~~p~l~D~~~ 108 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIA-F--SNRAEDFRKLGCEVLGVSVDSQFTH-LAWINTPRKEGGLGPLNIPLLADVTR 108 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCCCHHHHHH-H--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHhhCCCCCCceEEEECCcH
Confidence 5899999999 9999999987642 2 23333343 3455555555421111 1111
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003115 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 193 ~~~~~~~g~~------G~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
+.... .+.. ++|+++++|++|++++.. +..+.. ....++++.|.
T Consensus 109 ~~~~~-~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~-----~~~~e~l~~l~ 159 (197)
T 1qmv_A 109 RLSED-YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVG-----RSVDEALRLVQ 159 (197)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC-----CCHHHHHHHHH
T ss_pred HHHHH-cCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCC-----CCHHHHHHHHH
Confidence 11111 2444 799999999999998753 223321 24555555554
No 215
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=97.37 E-value=4.4e-05 Score=82.14 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC----CCCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR----EERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~----ee~p~~~~~y~~~~~~~~g~~G 203 (846)
+.+++.|+.-++..+++|+++||+.|+.|+. .|++-. +.+-.|++|. +++|++.+.| ++.|
T Consensus 187 ~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p-~le~lA------~~l~~Vd~d~~d~~~~~~~la~~~--------gI~~ 251 (291)
T 3kp9_A 187 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGAAF------DQVPYVECSPNGPGTPQAQECTEA--------GITS 251 (291)
T ss_dssp STHHHHHHHHHHTTCEEEECTTCHHHHHHHH-HHGGGG------GGSCEEESCSSCSSSCCCHHHHTT--------TCCS
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHH-HHHHHH------HHcCEEEEeecCchhhHHHHHHHc--------CCcc
Confidence 3455555554555578899999999999986 454421 2233455553 3367776555 8899
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|+.++ +|+++.
T Consensus 252 vPT~~i---~G~~~~ 263 (291)
T 3kp9_A 252 YPTWII---NGRTYT 263 (291)
T ss_dssp TTEEEE---TTEEEE
T ss_pred cCeEEE---CCEEec
Confidence 999555 787643
No 216
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=97.36 E-value=0.0018 Score=76.94 Aligned_cols=90 Identities=8% Similarity=0.033 Sum_probs=60.1
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC--CCCCCc
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS--KAPGFL 619 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~--~~~~~l 619 (846)
|+-.+-++.|||.|++++++. +..| ..++|+.|+++.+|..++-- ..+... ..+.. ...++.
T Consensus 286 s~~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~-----~~y~~~~~~~~g~Y~ss~~~ 350 (639)
T 1clc_A 286 SAATADFVAMTAMAARIFRPY--DPQY--------AEKCINAAKVSYEFLKNNPA-----NVFANQSGFSTGEYATVSDA 350 (639)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCCS-----CCCCCCTTCCSCCCCCSCSH
T ss_pred cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCC-----CccCCCccccccccCCCCcc
Confidence 344577899999999999752 1223 26799999999999987531 111100 00000 112333
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~ 650 (846)
-.+++|.+.||.+|||..|++.|++...
T Consensus 351 ---DEl~WAAawLy~ATgd~~Yl~~a~~~~~ 378 (639)
T 1clc_A 351 ---DDRLWAAAEMWETLGDEEYLRDFENRAA 378 (639)
T ss_dssp ---HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3458899999999999999999988764
No 217
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.35 E-value=0.0003 Score=67.74 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=47.4
Q ss_pred cCCCEEEEEeccCChh-hhhhhhcccCCHHHHHHHhc----CeEEEEEcCCC---CccHHHHHHH---------------
Q 003115 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND----WFVSIKVDREE---RPDVDKVYMT--------------- 193 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~etf~d~eVa~~ln~----~FV~vkvD~ee---~p~~~~~y~~--------------- 193 (846)
.||+|+|.|+++||+. |+.+... + .++.+.+.+ ++..|.|+.+. .|+..+.|.+
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~ 110 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLA-L--KRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEA 110 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHH-H--HHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHH-H--HHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHH
Confidence 5899999999999997 9986541 1 122222321 45666665543 2333333321
Q ss_pred ---HHHHhc--------------CCCCCCcEEEECCCCceecc
Q 003115 194 ---YVQALY--------------GGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 194 ---~~~~~~--------------g~~G~P~~v~l~pdg~~~~~ 219 (846)
..+.+. +..++|+++++| +|+++..
T Consensus 111 ~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 111 VREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 112210 134789999999 9998864
No 218
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=97.33 E-value=0.00038 Score=71.32 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=48.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~---------------------- 192 (846)
.||+|+|.|+ ++||+.|..+.. .|+ ++.+.+. +++..|-|..+.. +..+.|.
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~-~l~--~l~~~~~~~~v~vv~Is~D~~-~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEII-AFS--DKASEFHDVNCEVVAVSVDSH-FSHLAWINTPRKNGGLGHMNIALLSDLTK 130 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHH-HHH--HHHHHHHHTTEEEEEEESSCH-HHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCCH-HHHHHHHHHHHHhCCCcCCceEEEECCcH
Confidence 4799999999 999999997654 232 2333332 3555555554421 1111110
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003115 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 193 ~~~~~~~g~~------G~P~~v~l~pdg~~~~~~ 220 (846)
+..+ ..|.. ++|+++|+|++|++++..
T Consensus 131 ~i~~-~ygv~~~~~g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 131 QISR-DYGVLLEGPGLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp HHHH-HTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCeecCCCcccceEEEECCCCEEEEEE
Confidence 1111 23555 899999999999998754
No 219
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.31 E-value=0.00049 Score=68.05 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=28.4
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|..+-.. + .++.+.+. +.+..|-|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~is~d 91 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 91 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecCCCCchHHHHHH-H--HHHHHHhhcCCeEEEEEECc
Confidence 58999999999999999875431 2 23333343 34666666543
No 220
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.30 E-value=0.00035 Score=69.42 Aligned_cols=80 Identities=5% Similarity=-0.077 Sum_probs=48.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~--------------------- 193 (846)
.||+|+|.|+ ++||+.|..+.. .|+ ++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 105 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEII-ALD--KALDSFKERNVELLGCSVDS-KFTHLAWKKTPLSQGGIGNIKHTLISDISK 105 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEEeCC-HHHHHHHHHhHHhhCCccCCCcCeEECCcH
Confidence 5899999999 999999997654 222 1233332 345555555542 221111111
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003115 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 194 ~~~~~~g~~-----G~P~~v~l~pdg~~~~~~ 220 (846)
.+....|.. ++|+++|+|++|++++..
T Consensus 106 ~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~ 137 (192)
T 2h01_A 106 SIARSYDVLFNESVALRAFVLIDKQGVVQHLL 137 (192)
T ss_dssp HHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred HHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence 011123555 799999999999998753
No 221
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.28 E-value=0.00056 Score=67.33 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=29.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~e 182 (846)
.||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~-l--~~l~~~~~~~~v~vv~vs~d 89 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQ-L--VDLHARYAECGLRILAFPCN 89 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeCCCCCCcHHHHHH-H--HHHHHHHhcCCeEEEEEECC
Confidence 58999999999999999876542 2 234444443 4666666543
No 222
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=97.28 E-value=0.00039 Score=71.30 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=48.7
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHH--------------------
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~-------------------- 194 (846)
.||+|+|.|++ +||..|...-.. + .++.+.+. +++..|-|..+. ++-.+.+.+.
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~-l--~~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 143 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIA-F--SDQVEEFNSRNCQVIACSTDS-QYSHLAWDNLDRKSGGLGHMKIPLLADRKQ 143 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHH-H--HHTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTSCCSCSSCEEECSSS
T ss_pred CCCeEEEEEECCCCCCchHHHHHH-H--HHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhhhhccccccceeEEeCCch
Confidence 58999999996 999999986532 1 23333343 345555555542 2111122110
Q ss_pred -HHHhcCCC------CCCcEEEECCCCceeccc
Q 003115 195 -VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 195 -~~~~~g~~------G~P~~v~l~pdg~~~~~~ 220 (846)
+....+.. ++|+++++|++|++++..
T Consensus 144 ~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 144 EISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp HHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred HHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 11123554 789999999999998753
No 223
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=97.28 E-value=0.00062 Score=71.23 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCEEEEEec--cCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCC-----CccHHHHHHHHHHHhcC
Q 003115 130 AFAEARKRDVPIFLSIGY--STCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (846)
Q Consensus 130 Al~~Ak~e~KpI~l~~g~--~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee-----~p~~~~~y~~~~~~~~g 200 (846)
-|...-+.+++|||.|++ +||+ |.. +| .++++.+. .+++.++||.++ .+++.+.| +
T Consensus 14 nF~~~i~~~~~vlV~FyA~~pWCg----l~P-~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~--------~ 78 (240)
T 2qc7_A 14 TFYKVIPKSKFVLVKFDTQYPYGE----KQD-EF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY--------K 78 (240)
T ss_dssp HHHHHGGGCSEEEEEECCSSCCSH----HHH-HH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT--------T
T ss_pred HHHHHHcCCCCEEEEEeCCCCCCc----chH-HH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc--------C
Confidence 445455678999999999 9988 443 33 35666664 368999999654 67777666 8
Q ss_pred CC--CCCcEEEECCCCc
Q 003115 201 GG--GWPLSVFLSPDLK 215 (846)
Q Consensus 201 ~~--G~P~~v~l~pdg~ 215 (846)
+. |+|+++|+. +|+
T Consensus 79 V~~~~~PTl~~f~-~G~ 94 (240)
T 2qc7_A 79 LDKESYPVFYLFR-DGD 94 (240)
T ss_dssp CCGGGCSEEEEEE-TTC
T ss_pred CCCCCCCEEEEEe-CCC
Confidence 88 999999984 455
No 224
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.26 E-value=0.00043 Score=80.05 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=57.2
Q ss_pred HHHHHHHHhc-CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e-~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.+++.++. +++.++.|+++||++|+.|.. .++ +++ ..+.+....++|.++.|++.+.| ++.++|+
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~-~l~--~~a-~~~~~v~~~~vd~~~~~~~~~~~--------~i~svPt 173 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQ-ALN--LMA-VLNPRIKHTAIDGGTFQNEITER--------NVMGVPA 173 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHH-HHH--HHH-HHCTTEEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHH-HHH--HHH-hHcCceEEEEEechhhHHHHHHh--------CCCccCE
Confidence 5566666554 445577889999999999875 332 233 23457788899999999988777 8889999
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
.++ +|+.+..
T Consensus 174 ~~i---~g~~~~~ 183 (521)
T 1hyu_A 174 VFV---NGKEFGQ 183 (521)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEec
Confidence 987 8888754
No 225
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=97.24 E-value=0.00075 Score=64.72 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=48.5
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHH--------------HHhcC
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV--------------QALYG 200 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~--------------~~~~g 200 (846)
.||+++|.|++ +||+.|...-.. + .++.+.+. +++..|-|..+ .++..+.|.+.. ....|
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~-l--~~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLD-F--NALLPEFDKAGAKILGVSRD-SVKSHDNFCAKQGFAFPLVSDGDEALCRAFD 109 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHH-H--HHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHCCSSCEEECTTCHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHH-H--HHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHhCCCceEEECCcHHHHHHhC
Confidence 48999999998 999999986532 2 22333333 34555555544 344333343211 11124
Q ss_pred CCC------------CCcEEEECCCCceeccc
Q 003115 201 GGG------------WPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 201 ~~G------------~P~~v~l~pdg~~~~~~ 220 (846)
..+ .|+++++|++|++++..
T Consensus 110 v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 110 VIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CccccccccccccCcceEEEEECCCCeEEEEE
Confidence 333 89999999999998653
No 226
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.18 E-value=0.00047 Score=67.38 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHhcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHH--------------H
Q 003115 132 AEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV--------------Q 196 (846)
Q Consensus 132 ~~Ak~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~--------------~ 196 (846)
..-..+||+|+|.|+ ++||+.|...- -.|++- ..++-++++..|-|..+ .|+..+.|.+.. .
T Consensus 27 sd~~~~Gk~vvl~f~~~~~cp~C~~e~-~~l~~~-~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~~~fp~l~D~~~~v~ 103 (164)
T 4gqc_A 27 YEVLKRGRPAVLIFFPAAFSPVCTKEL-CTFRDK-MAQLEKANAEVLAISVD-SPWCLKKFKDENRLAFNLLSDYNREVI 103 (164)
T ss_dssp HHHHHTSSCEEEEECSCTTCCEECSSC-EESCCC-GGGGGGSSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHH
T ss_pred HHHhcCCCEEEEEEeCCCCCCCcccch-hhhhhh-HHHhhccCceEEEecCC-CHHHHHHHHHhcCcccceeecCchHHH
Confidence 333457999999998 99999998632 233321 11222334544444443 333333332210 0
Q ss_pred HhcCC----------CCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHHHH
Q 003115 197 ALYGG----------GGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 197 ~~~g~----------~G~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
...|+ ...|+++++|++|++.+.. +..| .+++++-++|+.+.++
T Consensus 104 ~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 104 KLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNP----LNEPDYDEVVREANKI 158 (164)
T ss_dssp HHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCT----TCCCCHHHHHHHHHHH
T ss_pred HHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCC----CCCCCHHHHHHHHHHH
Confidence 11132 1368899999999988752 2222 2345777777776543
No 227
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=97.17 E-value=0.00065 Score=65.61 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.++.+.+.+ +|.| |+++||++|+.+.. +.+.++-.|..|.||.++. +++. ..+...+|..++|+
T Consensus 39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~----~~L~~~~g~~tvP~ 105 (146)
T 2ht9_A 39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQ----DALYKMTGERTVPR 105 (146)
T ss_dssp HHHHHHHHHHC-SEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHH----HHHHHHHSCCCSCE
T ss_pred HHHHHHHhcCC-CEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHH----HHHHHHhCCCCcCe
Confidence 55666666655 4555 99999999999874 2233455787777776522 3322 22223348889998
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
+++ +|+.+.+
T Consensus 106 ifi---~G~~igG 115 (146)
T 2ht9_A 106 IFV---NGTFIGG 115 (146)
T ss_dssp EEE---TTEEEES
T ss_pred EEE---CCEEEeC
Confidence 754 6777654
No 228
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=97.15 E-value=0.00069 Score=69.09 Aligned_cols=79 Identities=5% Similarity=-0.078 Sum_probs=48.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHH----------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~---------------------- 192 (846)
.||+|+|.|+ ++||+.|..+... |+ ++.+.+. +++..|-|..+. ++..+.|.
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 126 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIA-LD--KALDAFHERNVELLGCSVDS-KYTHLAWKKTPLAKGGIGNIKHTLLSDITK 126 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHSSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCccCCCceEEECCch
Confidence 5899999999 9999999987642 22 2233332 345555554442 22111111
Q ss_pred HHHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003115 193 TYVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 193 ~~~~~~~g~~-----G~P~~v~l~pdg~~~~~~ 220 (846)
+..+ ..|.. ++|.++++|++|++++..
T Consensus 127 ~~~~-~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 127 SISK-DYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp HHHH-HTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCccccCCcccEEEEECCCCEEEEEE
Confidence 1111 12555 789999999999998764
No 229
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.12 E-value=0.0015 Score=64.10 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=29.4
Q ss_pred hcCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHhc-----CeEEEEEcC
Q 003115 136 KRDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND-----WFVSIKVDR 181 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln~-----~FV~vkvD~ 181 (846)
=.||+|+|+|++.||+ ||..+-.+- +++.+.+.+ .||.|-||-
T Consensus 30 ~~Gk~vll~F~~t~Cp~~Cp~~~~~l---~~l~~~~~~~~~~v~~v~isvDp 78 (170)
T 4hde_A 30 LKGKVWVADFMFTNCQTVCPPMTANM---AKLQKMAKEEKLDVQFVSFSVDP 78 (170)
T ss_dssp HTTSCEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEESCT
T ss_pred hCCCEEEEEEECCCCCCcccHHHHHH---HHHHHhhhcccccceeEeeecCc
Confidence 3699999999999996 997755422 345555532 356677774
No 230
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=97.10 E-value=0.33 Score=54.47 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee----eccCCCccccc--cc-cccCCceEEecHHHH
Q 003115 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS----AEDADSAETEG--AT-RKKEGAFYVWTSKEV 453 (846)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfys----a~DADs~~~~~--~~-~~~EGayY~wt~~Ei 453 (846)
.|--++++++-.-.+|+||.|++.|.++.+|.+.++.++.|-||| .+|=|....+| +| ...|=++-.=-++=+
T Consensus 59 sQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yf~dh~vd~sGL~~WGGHrFi~L~tl~~eGP~~K~~VHELKhh~PyY~lm 138 (543)
T 2v8i_A 59 AQQNLMRVMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDPSGLLYWGGHRFVDLKTLQPEGPSEKEMVHELKNAYPYYDLM 138 (543)
T ss_dssp GCHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHSBCTTSCBSCSTTCEEETTTCCEECCCTTCCSBCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcccCCCCceeecCceeEeccccCccCccccchhhHhhhcCchHHHH
Confidence 466788999999999999999999999999999999988898997 44444332222 12 222322211112222
Q ss_pred HHHhhhhHH-HHHHHh----------cccCCCCcCCCC----CCCCCC--CC-CCcceeecc--C----CchHHHHHcCC
Q 003115 454 EDILGEHAI-LFKEHY----------YLKPTGNCDLSR----MSDPHN--EF-KGKNVLIEL--N----DSSASASKLGM 509 (846)
Q Consensus 454 ~~~L~~~~~-~~~~~f----------~i~~~Gn~e~~~----~~d~~g--~f-eg~nvL~~~--~----~~~~~a~~~g~ 509 (846)
.++-.+.-. .++..| ++..-|++.-.. .+||.+ .| +++..-.+. . +...+++..|-
T Consensus 139 ~~vdp~aT~rfi~afWnAHV~DW~~Ld~~RHG~Y~k~~~~~~f~dp~~~p~l~etkGLTFvNaG~DLiYaA~~l~~~~gd 218 (543)
T 2v8i_A 139 FSVDSDATARFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFLNAGNDLIYSASLLYKHQQD 218 (543)
T ss_dssp HHHCHHHHHHHHHHHHHHHEEETTTTEECSCBCTTCCCCCGGGSCCCCCCTTEEESSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCchhccCcccCCCccccCCceEeecCcHHHHHHHHHHHhCCc
Confidence 333333322 333333 224444432111 112211 11 222111111 0 01112222221
Q ss_pred CHHHHHHHHHHHHHHHHhhhc--------------CCCCCC--------------------------------C-Cchhh
Q 003115 510 PLEKYLNILGECRRKLFDVRS--------------KRPRPH--------------------------------L-DDKVI 542 (846)
Q Consensus 510 ~~~~l~~~l~~~r~~L~~~R~--------------~R~~P~--------------------------------~-DdKil 542 (846)
+.....=+...++-..+|. +|..|- + |+.-|
T Consensus 219 --~~a~~W~k~L~~QYVlaR~p~TGl~vYQFssp~kr~~P~dd~~t~S~~GDRAqRQFGPEfG~iA~EanvLFk~d~~pl 296 (543)
T 2v8i_A 219 --QGALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTSTL 296 (543)
T ss_dssp --HHHHHHHHHHHHHTTTTSCTTTCCCCSCSEEECCCSCCCCTTCCCGGGCCHHHHHHHHHHCTTCCGGGEECTTHHHHH
T ss_pred --hHHHHHHHHHHHHHhhccCCCCCCceeeecCccccCCCcccccccchhhhHHHhhhCcccchhhhhhcceeccCCcce
Confidence 1111111111222233443 344443 2 44445
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-------
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA------- 615 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~------- 615 (846)
..=|+||.-.|++- .++. .++.++.+++....-.+..+|++++.|.-.+.||+...
T Consensus 297 ~~dn~La~l~l~~~---~~~~--------------d~~~l~W~i~gLka~~~yAYd~~~N~~~Pm~~dG~dltgy~l~Rd 359 (543)
T 2v8i_A 297 YSENALMQLQLGKD---LGPQ--------------GQDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQDLSNYTLPRD 359 (543)
T ss_dssp HTHHHHHHHHHHHH---HGGG--------------GHHHHHHHHHHHHHHHHHHEETTTTEECCEETTSCBCTTEECSSC
T ss_pred eecCHHHHHHHHHH---hcCc--------------hHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccc
Confidence 55566666666554 3221 16788888888777778889999988877778875411
Q ss_pred ----------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCC
Q 003115 616 ----------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA 685 (846)
Q Consensus 616 ----------~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a 685 (846)
.++.-|-. ....+++.|.+++|+.-.+.+..++..+-- |.+=........+ +-.
T Consensus 360 GYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~Lw~~~~~ma~~~~l-------gdi~~~~~~~~~~--------~~~ 423 (543)
T 2v8i_A 360 GYYGKKGTVLKPYKAGNE-FLISYARAYAIDNDPLLWKVARGIANDQGL-------GDIGTAPGKEVKV--------NMD 423 (543)
T ss_dssp BTTBCTTCEECCEECCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHTTC-------EECTTBTTBSCEE--------CTT
T ss_pred cccCCCCCeeccccCCch-hhHHHHHHHHcCCCHHHHHHHHHHHhhCCc-------cccCCCcCccccc--------ccC
Confidence 13333333 466999999999999988888777644311 1111111111111 223
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 686 EPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 686 ~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
.+.....++.+|+.|++.|++ +.|++.|+++=+.+..
T Consensus 424 ~~~~sp~lL~allEL~~atq~---~~~l~lA~~~g~nl~~ 460 (543)
T 2v8i_A 424 TTNSDPYALFALLDLYHASQV---ADYRKLAEKIGDNIIK 460 (543)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence 344556788899999999986 8899999877666544
No 231
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.04 E-value=0.0019 Score=65.82 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (846)
..+|++++.|+..||++|+.++.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHEQ 107 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH
Confidence 458999999999999999999874
No 232
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.002 Score=60.57 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~-p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.+..+.+.++ |.| |+++||++|+.+.. . .+.++-.|..|.||.++. +++. ..+...+|..++|+
T Consensus 17 ~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-~------L~~~~i~~~~vdid~~~~~~~~~----~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 17 VNQIQETISDNC-VVI-FSKTSCSYCTMAKK-L------FHDMNVNYKVVELDLLEYGNQFQ----DALYKMTGERTVPR 83 (130)
T ss_dssp HHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-H------HHHHTCCCEEEETTTSTTHHHHH----HHHHHHHSSCCSSE
T ss_pred HHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-H------HHHcCCCcEEEECcCCcCcHHHH----HHHHHHhCCCCcCE
Confidence 555666666654 555 99999999999875 2 233455687776665422 3322 22233348889998
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
+++ +|+.+.+
T Consensus 84 l~i---~G~~igg 93 (130)
T 2cq9_A 84 IFV---NGTFIGG 93 (130)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEcC
Confidence 754 6776643
No 233
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=96.92 E-value=0.00056 Score=66.08 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=51.4
Q ss_pred hcCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003115 136 KRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (846)
Q Consensus 136 ~e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~---------------~~~~~ 199 (846)
-.||+|+|.|+ ++||+.|...-. .|.+- ..++-+.+++.|-|..+ .|+..+.|.+. .+. .
T Consensus 28 ~~Gk~vvl~f~~~~~c~~C~~e~~-~l~~~-~~~~~~~~~~~v~vs~d-~~~~~~~~~~~~~~~~p~l~D~~~~v~~~-y 103 (157)
T 4g2e_A 28 LKGKVVVLAFYPAAFTQVCTKEMC-TFRDS-MAKFNQVNAVVLGISVD-PPFSNKAFKEHNKLNFTILSDYNREVVKK-Y 103 (157)
T ss_dssp GTTSCEEEEECSCTTCCC-------CCSCG-GGGGGGCSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHHHH-T
T ss_pred HCCCeEEEEecCCCCCCccccchh-hcccc-cccccccCceEeeeccc-chhHHHHHHHHcCCcEEEEEcCCcHHHHH-c
Confidence 35899999998 999999986433 33321 12222345665555554 23333333221 111 1
Q ss_pred CC-----------CCCCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHHH
Q 003115 200 GG-----------GGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 200 g~-----------~G~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
|+ ...|+++++|++|++.+.. +..+. +.+.+-++++.|.
T Consensus 104 gv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~----~~~~~~eil~~l~ 154 (157)
T 4g2e_A 104 NVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPT----KEPPYDEIEKVVK 154 (157)
T ss_dssp TCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTT----CCCCHHHHHHHHH
T ss_pred CCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCC----CCCCHHHHHHHHH
Confidence 22 1257889999999988653 22222 3455666665554
No 234
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=96.92 E-value=0.0027 Score=63.68 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.3
Q ss_pred cCCCEEEEEeccCChh-hhhhhh
Q 003115 137 RDVPIFLSIGYSTCHW-CHVMEV 158 (846)
Q Consensus 137 e~KpI~l~~g~~wC~w-C~~me~ 158 (846)
.||+|+|.|+++||+. |..+-.
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~ 62 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELD 62 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHH
Confidence 4899999999999997 987653
No 235
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=96.90 E-value=0.0037 Score=62.09 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=30.6
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e 182 (846)
..+|++++.|+..||++|+.|+... +++.+.+..+.+.+.++..
T Consensus 23 ~~~~~~vv~f~d~~Cp~C~~~~~~l---~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHCAAIEPMV---EDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp STTCEEEEEEECTTCHHHHHHHHHH---HHHHHTCCTTEEEEEEECC
T ss_pred CCCCeEEEEEECCCCccHHHhhHHH---HHHHHHCCCCeEEEEEecc
Confidence 3478999999999999999998532 4444444334555565553
No 236
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.77 E-value=0.0031 Score=65.63 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=52.8
Q ss_pred HHHHHH-HHhcCCCEEEEEeccC--ChhhhhhhhcccCCHHHHHHHhc---C--eEEEEEcCCCCccHHHHHHHHHHHhc
Q 003115 128 EEAFAE-ARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVYMTYVQALY 199 (846)
Q Consensus 128 ~eAl~~-Ak~e~KpI~l~~g~~w--C~wC~~me~etf~d~eVa~~ln~---~--FV~vkvD~ee~p~~~~~y~~~~~~~~ 199 (846)
.+.|+. -++-++||.|.|+++| |.+|+.|.. .+ +++++..++ . ...+++|.++.+++.+.|
T Consensus 14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~-~l--~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~-------- 82 (243)
T 2hls_A 14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLR-LM--KLFEEESPTRNGGKLLKLNVYYRESDSDKFSEF-------- 82 (243)
T ss_dssp HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHHHSCEETTEESEEEEEEETTTTHHHHHHT--------
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHH-HH--HHHHHhccCCCCCceeEEEEecCCcCHHHHHhc--------
Confidence 344433 3466799999999999 999999974 22 345554321 1 566789999888887776
Q ss_pred CCCCCCcEEEE
Q 003115 200 GGGGWPLSVFL 210 (846)
Q Consensus 200 g~~G~P~~v~l 210 (846)
|+.++|+.+|+
T Consensus 83 gv~~~Pt~~i~ 93 (243)
T 2hls_A 83 KVERVPTVAFL 93 (243)
T ss_dssp TCCSSSEEEET
T ss_pred CCCcCCEEEEE
Confidence 88899999998
No 237
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=96.73 E-value=0.0051 Score=54.69 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCC
Q 003115 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 129 eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~-p~~~~~y~~~~~~~~g~~G~ 204 (846)
+-++.+.+.++ ++.|+++||++|+.+.. .+ +.++.. |..|.||.+.. +++.. .+...+|..++
T Consensus 3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~-~L------~~~~~~~~~~~~vdi~~~~~~~~~~~----~l~~~~g~~~v 69 (105)
T 1kte_A 3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQE-LL------SQLPFKEGLLEFVDITATSDTNEIQD----YLQQLTGARTV 69 (105)
T ss_dssp HHHHHHCCTTC--EEEEECSSCHHHHHHHH-HH------HHSCBCTTSEEEEEGGGSTTHHHHHH----HHHHHHSCCCS
T ss_pred hHHHhhcccCC--EEEEEcCCCHhHHHHHH-HH------HHcCCCCCccEEEEccCCCCHHHHHH----HHHHHhCCCCc
Confidence 34555555554 45589999999999874 22 223334 77766665421 22222 22223488899
Q ss_pred CcEEEECCCCceecc
Q 003115 205 PLSVFLSPDLKPLMG 219 (846)
Q Consensus 205 P~~v~l~pdg~~~~~ 219 (846)
|+.+ + +|+.+.+
T Consensus 70 P~i~-~--~g~~i~g 81 (105)
T 1kte_A 70 PRVF-I--GKECIGG 81 (105)
T ss_dssp CEEE-E--TTEEEES
T ss_pred CeEE-E--CCEEEec
Confidence 9974 4 5676643
No 238
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=96.67 E-value=0.0062 Score=59.92 Aligned_cols=79 Identities=6% Similarity=-0.031 Sum_probs=46.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHH--------------HhcC
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQ--------------ALYG 200 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~~--------------~~~g 200 (846)
.||+|+|.|+ ++||+.|...-. .+ .++.+.+. +++..|-|..+. ++..+.|.+... ...|
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~-~l--~~l~~~~~~~~~~vv~Vs~D~-~~~~~~~~~~~~~~f~~l~D~~~~~~~~~g 125 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGL-EF--NLLLPQFEQINATVLGVSRDS-VKSHDSFCAKQGFTFPLVSDSDAILCKAFD 125 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHH-HH--HHHHHHHHTTTEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTCHHHHHTT
T ss_pred CCCCEEEEEEcCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCceEEEECCchHHHHHcC
Confidence 4899999998 999999986432 22 23333333 346555565543 333333322110 1112
Q ss_pred CC------------CCCcEEEECCCCceecc
Q 003115 201 GG------------GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 201 ~~------------G~P~~v~l~pdg~~~~~ 219 (846)
.. -.|+++++|++|++++.
T Consensus 126 v~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 126 VIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp CEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred CcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 21 15899999999999865
No 239
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=96.67 E-value=0.0054 Score=59.62 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhh
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~ 158 (846)
..+|++++.|...||++|+.++.
T Consensus 20 ~~a~v~i~~f~d~~Cp~C~~~~~ 42 (175)
T 3gyk_A 20 PEGDVTVVEFFDYNCPYCRRAMA 42 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEEECCCCccHHHHHH
Confidence 45788999999999999999985
No 240
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=96.65 E-value=0.0046 Score=57.16 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.++.+.+.++ |. .|+++||++|+.+ .. .+++... -+-.|..|.||.+ |+-.. ..+.+...+|..++|+
T Consensus 15 ~~~~~~~i~~~~-Vv-vf~~~~Cp~C~~alk~-~L~~~~~---~~i~~~~vdid~~--~~~~~-~~~~l~~~~g~~tvP~ 85 (118)
T 3c1r_A 15 IKHVKDLIAENE-IF-VASKTYCPYCHAALNT-LFEKLKV---PRSKVLVLQLNDM--KEGAD-IQAALYEINGQRTVPN 85 (118)
T ss_dssp HHHHHHHHHHSS-EE-EEECSSCHHHHHHHHH-HHTTSCC---CGGGEEEEEGGGS--TTHHH-HHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHccCc-EE-EEEcCCCcCHHHHHHH-HHHHcCC---CCCCeEEEECccC--CChHH-HHHHHHHHhCCCCcCE
Confidence 445555555554 33 4999999999997 53 3333220 0024555555543 33111 1222233348889997
Q ss_pred EEEECCCCceecc
Q 003115 207 SVFLSPDLKPLMG 219 (846)
Q Consensus 207 ~v~l~pdg~~~~~ 219 (846)
. |+ +|+.+.+
T Consensus 86 v-fi--~g~~igG 95 (118)
T 3c1r_A 86 I-YI--NGKHIGG 95 (118)
T ss_dssp E-EE--TTEEEES
T ss_pred E-EE--CCEEEEc
Confidence 6 44 5666643
No 241
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=96.64 E-value=0.0017 Score=66.19 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=21.3
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (846)
+.+|++++.|+..||++|+.++.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQ 107 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHhHHHHHHH
Confidence 357899999999999999999864
No 242
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=96.63 E-value=0.0041 Score=61.65 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=26.8
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEE
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI 177 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~v 177 (846)
.+|++++.|+..||++|+.++. ++ +++.+.+...++.+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~-~l--~~l~~~~~~~v~~~ 61 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEP-TI--VPWSEKLPADVHFV 61 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH-HH--HHHHHTCCTTEEEE
T ss_pred CCCCEEEEEECCCChhHHHhhH-HH--HHHHHhCCCCeEEE
Confidence 5788999999999999999986 33 44544443333333
No 243
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=96.62 E-value=0.0039 Score=60.06 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=23.8
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 205 P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
|+++++|++|++++....-.. ...+.+.++|+.|.+
T Consensus 127 p~~~liD~~G~i~~~~~g~~~---~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 127 RAVFVLDTDNTIRYVEYVDNI---NSEPNFEAAIAAAKA 162 (163)
T ss_dssp CEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCeEEEEEecCCc---CCCCCHHHHHHHHHh
Confidence 999999999999875321111 124567777776653
No 244
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=96.60 E-value=0.0043 Score=59.97 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=53.5
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHHHH----------------h
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQA----------------L 198 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~~~----------------~ 198 (846)
.||+|+|.|+ +.||+.|...- |++.++.. +++..|-|..+ .|+..+.|.+.... .
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 117 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISAD-LPFAQKRWCASAGLDNVITLSDHRDLSFGEN 117 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESS-CHHHHHHHHHHHTCSSCEEEECTTTCHHHHH
T ss_pred CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECC-CHHHHHHHHHHcCCCceEEccCCchhHHHHH
Confidence 4899999998 78999998633 33333333 23444444433 22222222211110 0
Q ss_pred cCCCC------CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 199 YGGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 199 ~g~~G------~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
.|..+ .|+++++|++|++++....... ...+.+.++|+.+.
T Consensus 118 ~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~---~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 118 YGVVMEELRLLARAVFVLDADNKVVYKEIVSEG---TDFPDFDAALAAYK 164 (166)
T ss_dssp HTCEETTTTEECCEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEEcCCc---ccCCCHHHHHHHHh
Confidence 13332 7999999999999875211111 12356777777664
No 245
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=96.59 E-value=0.016 Score=68.37 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 003115 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 623 (846)
Q Consensus 546 NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA 623 (846)
.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++-- .+......+.. ...++.|
T Consensus 219 a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~~-----~y~~~~~~~~~~Y~ss~~~D--- 280 (611)
T 2yik_A 219 ISATAASLAINYMNFKDT--DPQY--------AAKSLDYAKALFDFAEKNPK-----GVVQGEDGPKGYYGSSKWQD--- 280 (611)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSCC-----CCCCGGGTTTTTSCCCCSHH---
T ss_pred HHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCC-----cccCCCcccCcCCCCCCccc---
Confidence 478899999999999762 1223 26789999999999987531 11110111111 1123333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 624 FLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 624 ~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
.+++|.++||.+|||..|++.|++..
T Consensus 281 El~WAAawLy~ATgd~~Yl~~a~~~~ 306 (611)
T 2yik_A 281 DYCWAAAWLYLATQNEHYLDEAFKYY 306 (611)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45789999999999999999998754
No 246
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.58 E-value=0.0038 Score=65.57 Aligned_cols=97 Identities=13% Similarity=-0.098 Sum_probs=53.4
Q ss_pred cCCC-EEEEEeccCChhhhhhhhcccCCHHHHHHH-hcCeEEEEEcCCCCccHHHHHHH---------------------
Q 003115 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT--------------------- 193 (846)
Q Consensus 137 e~Kp-I~l~~g~~wC~wC~~me~etf~d~eVa~~l-n~~FV~vkvD~ee~p~~~~~y~~--------------------- 193 (846)
.||+ ||++|.++||+.|..+-. .|++ +.+.+ ++++..|-|+.+.. .-...+.+
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~-~l~~--l~~ef~~~gv~VI~VS~Ds~-~~~~~w~~~~~~~~~~~i~fPil~D~~~~ 107 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFV-SFAR--RYEDFQRLGVDLIGLSVDSV-FSHIKWKEWIERHIGVRIPFPIIADPQGT 107 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHH-HHHH--THHHHHHTTEEEEEEESSCH-HHHHHHHHHHHHHTCCCCCSCEEECTTSH
T ss_pred CCCEEEEEEEcCCCCcChHHHHH-HHHH--HHHHHHhCCcEEEEEECCCH-HHHHHHHHHHHHhcCCCCceeEEECCchH
Confidence 5786 566889999999997543 2321 22222 23555555555421 11111111
Q ss_pred HHHHhcCCC-------CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHH
Q 003115 194 YVQALYGGG-------GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (846)
Q Consensus 194 ~~~~~~g~~-------G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (846)
.... .|+. ++|.++|+||+|++.....|-.+.+ .++.++|+.|.
T Consensus 108 ia~~-ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~g----r~~~Ellr~I~ 158 (249)
T 3a2v_A 108 VARR-LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG----RLVDEILRIVK 158 (249)
T ss_dssp HHHH-HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred HHHH-hCCccccCCCcccceEEEECCCCeEEEEEecCCccc----chhHHHHHHHH
Confidence 1111 2433 8999999999999987654422211 14566665554
No 247
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=96.57 E-value=0.0086 Score=54.36 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
++.+++..+.++ ++.|+++||++|+.+.. . .+.++-.|..|.||... |+ +......+...+|...+|+.
T Consensus 9 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~-~------L~~~~i~~~~~di~~~~-~~-~~~~~~~l~~~~g~~tvP~i 77 (113)
T 3rhb_A 9 EESIRKTVTENT--VVIYSKTWCSYCTEVKT-L------FKRLGVQPLVVELDQLG-PQ-GPQLQKVLERLTGQHTVPNV 77 (113)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHH-H------HHHTTCCCEEEEGGGST-TH-HHHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHhcCC--EEEEECCCChhHHHHHH-H------HHHcCCCCeEEEeecCC-CC-hHHHHHHHHHHhCCCCcCEE
Confidence 556666666666 34489999999998773 2 23345567777776531 11 11223333444688899998
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
++ +|+.+.|
T Consensus 78 fi---~g~~igG 86 (113)
T 3rhb_A 78 FV---CGKHIGG 86 (113)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEcC
Confidence 54 6666643
No 248
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=96.55 E-value=0.0019 Score=54.90 Aligned_cols=66 Identities=20% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g--~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.+.. .+++ +++.. .++-.+.+|.++.+...+.+ ....| ..++|+.+ + +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~~--l~~~~-~~i~~~~vdi~~~~~~~~~l----~~~~~~~~~~vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-LAEK--LSNER-DDFQYQYVDIRAEGITKEDL----QQKAGKPVETVPQIF-V--DQQHIG 70 (85)
T ss_dssp EEEECCTTSTHHHHHHH-HHHH--HHHHH-SSCEEEEECHHHHTCCSHHH----HHHTCCCSCCSCEEE-E--TTEEEE
T ss_pred EEEEeCCCCCCHHHHHH-HHHH--HHhcC-CCceEEEEecccChHHHHHH----HHHhCCCCceeCeEE-E--CCEEEE
Confidence 56689999999999875 3332 22221 35666677765433211111 11225 68999974 4 677764
No 249
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=96.53 E-value=0.0026 Score=65.38 Aligned_cols=80 Identities=8% Similarity=-0.081 Sum_probs=45.0
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHH-------------------
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV------------------- 195 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~------------------- 195 (846)
.||+|+|.|+ ++||+.|...-.. |+ ++.+.+. +++..|-|..+. ++..+.|.+..
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIE-FN--KHIKDFENKNVELLGISVDS-VYSHLAWKNMPIEKGGIGNVEFTLVSDINK 130 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCchHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHhhhhcCccCCceEEEECCch
Confidence 5899999999 9999999874321 21 1222222 344444444332 22112221111
Q ss_pred --HHhcCC-----CCCCcEEEECCCCceeccc
Q 003115 196 --QALYGG-----GGWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 196 --~~~~g~-----~G~P~~v~l~pdg~~~~~~ 220 (846)
....|. ..+|+++++|++|++++..
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 011243 2579999999999998763
No 250
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=96.46 E-value=0.0012 Score=68.61 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (846)
..+|.+++.|+..||++|+.++.+
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~~ 118 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQQ 118 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 356778999999999999999864
No 251
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=96.44 E-value=0.013 Score=69.10 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC----Ccc
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG----FLD 620 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~----~le 620 (846)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |. +.++.. ..+ ...
T Consensus 152 ~a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~-----g~----y~~~~~-~~~~Y~s~s~ 211 (605)
T 1tf4_A 152 VAAETAAAMAASSIVFADD--DPAY--------AATLVQHAKQLYTFADTYR-----GV----YSDCVP-AGAFYNSWSG 211 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CC----GGGTST-THHHHCCSSC
T ss_pred HHHHHHHHHHHHHhhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CC----cCCCCC-ccccccCCCC
Confidence 4488999999999999852 1222 2678999999999998752 11 111111 100 012
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 621 DyA~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
..-.+++|.+.||.+|||..||+.|++..
T Consensus 212 ~~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 240 (605)
T 1tf4_A 212 YQDELVWGAYWLYKATGDDSYLAKAEYEY 240 (605)
T ss_dssp SHHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 23457889999999999999999998743
No 252
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=96.42 E-value=0.0026 Score=58.20 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.+..+.+.++ ++.|+++||++|+.+.. .++.-.+. +.+|..|.||. .|+-... ...+...+|..++|+.
T Consensus 9 ~~~~~~~i~~~~--vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~~--~~~~~~~-~~~l~~~~g~~~vP~v 79 (114)
T 2hze_A 9 EEFVQQRLANNK--VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIKE--FKPENEL-RDYFEQITGGKTVPRI 79 (114)
T ss_dssp HHHHHTTCCTTC--EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGGG--SSSHHHH-HHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCC--EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEccC--CCChHHH-HHHHHHHhCCCCcCEE
Confidence 455556555444 55589999999998875 44432221 01266655554 3421111 1122233488899976
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
+ + +|+.+.+
T Consensus 80 ~-i--~g~~igg 88 (114)
T 2hze_A 80 F-F--GKTSIGG 88 (114)
T ss_dssp E-E--TTEEEES
T ss_pred E-E--CCEEEeC
Confidence 4 4 6777643
No 253
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=96.42 E-value=0.031 Score=63.86 Aligned_cols=84 Identities=20% Similarity=0.166 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CC-CCCcch
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KA-PGFLDD 621 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~-~~~leD 621 (846)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--. + ....+.. .. .++.
T Consensus 173 ~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~~-----~--~~~~~~~~Y~s~s~~~-- 233 (466)
T 2xfg_A 173 VVAETSAALAIASIIFKKV--DGEY--------SKECLKHAKELFEFADTTKSD-----D--GYTAANGFYNSWSGFY-- 233 (466)
T ss_dssp HHHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHHCCC-----T--TCCTTTTTSCCSSCSH--
T ss_pred HHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhcCCc-----C--CCCccccccCCCCCCc--
Confidence 3488899999999999862 1223 267899999999999887421 1 0001111 01 2333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIEL 648 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L 648 (846)
-.+++|.+.||.+|||..|++.|++.
T Consensus 234 -DEl~WAAawLy~ATgd~~Yl~~a~~~ 259 (466)
T 2xfg_A 234 -DELSWAAVWLYLATNDSSYLDKAESY 259 (466)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35588999999999999999999864
No 254
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=96.41 E-value=0.057 Score=60.09 Aligned_cols=131 Identities=7% Similarity=-0.124 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE-E-Eec----------CCC
Q 003115 546 NGLVISSFARASKILK-SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ-H-SFR----------NGP 612 (846)
Q Consensus 546 NglmI~ALa~A~~v~~-d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~-~-~~~----------dg~ 612 (846)
-|.+ ..|+.+++... + +.+++.++++.+++.+...++.+|.++ . ..+ ...
T Consensus 209 aGi~-~~L~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~ 271 (409)
T 2g0d_A 209 AGVG-CILAYAHIKGYSN----------------EASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREAS 271 (409)
T ss_dssp HHHH-HHHHHHHHHTCCC----------------HHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCS
T ss_pred HHHH-HHHHHHHHhCCCC----------------hhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCC
Confidence 3444 78888776532 3 789999999999997776544445421 1 011 112
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHH
Q 003115 613 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (846)
Q Consensus 613 ~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv 692 (846)
+...+...+-+=.+.+++.+|++++|++|++.|++..+.+.+. ++... +...=-|.+=
T Consensus 272 ~~~~~WChG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~~~~~------~~~~~----------------~~~LCHG~aG 329 (409)
T 2g0d_A 272 FIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQR------KLGID----------------SYMICHGYSG 329 (409)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------CTTCC----------------SCCTTTSHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------ccCCC----------------CCCCCChHHH
Confidence 2344666777778899999999999999999999999888765 10000 0112235555
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHH
Q 003115 693 SVINLVRLASIVAGSKSDYYRQNAEH 718 (846)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~~~A~~ 718 (846)
.+..|+++++.+++ ++|.+++.+
T Consensus 330 ~~~~l~~l~~~~~~---~~~~~~a~~ 352 (409)
T 2g0d_A 330 LIEICSLFKRLLNT---KKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHHHCC---CTTHHHHHH
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHH
Confidence 66778899999986 568888876
No 255
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=96.41 E-value=0.0046 Score=52.19 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=38.0
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.+.. .++ .++-.|. .+|.++.|++.+.+. . .|..++|+.+ . +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~------~~~i~~~--~vdi~~~~~~~~~~~----~-~g~~~vP~~~-~--~g~~~~ 62 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-AME------NRGFDFE--MINVDRVPEAAEALR----A-QGFRQLPVVI-A--GDLSWS 62 (81)
T ss_dssp EEEEECTTCHHHHHHHH-HHH------HTTCCCE--EEETTTCHHHHHHHH----H-TTCCSSCEEE-E--TTEEEE
T ss_pred EEEEcCCCChhHHHHHH-HHH------HCCCCeE--EEECCCCHHHHHHHH----H-hCCCccCEEE-E--CCEEEe
Confidence 45689999999999864 222 2233454 566666676554332 1 4888999884 3 566553
No 256
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=96.34 E-value=0.014 Score=56.83 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=46.3
Q ss_pred cCCCEEEEEeccCCh-hhhhhhhcccCCHHHHHHHh---c--CeEEEEEcCCCCccHHHHHH------------------
Q 003115 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLN---D--WFVSIKVDREERPDVDKVYM------------------ 192 (846)
Q Consensus 137 e~KpI~l~~g~~wC~-wC~~me~etf~d~eVa~~ln---~--~FV~vkvD~ee~p~~~~~y~------------------ 192 (846)
.||+|+|.|+++||+ .|...... + .++.+.+. + .+|.|-+|-.+.|+..+.|.
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~~~-l--~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~ 103 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLITKS-L--LKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTS 103 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHH-H--HTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSH
T ss_pred CCCEEEEEEECCCCCchhHHHHHH-H--HHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCH
Confidence 389999999999997 69875542 2 22334442 2 35556666322333222222
Q ss_pred ----HHHHHhcC---------CCCCCcEEEECCCCceecc
Q 003115 193 ----TYVQALYG---------GGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 193 ----~~~~~~~g---------~~G~P~~v~l~pdg~~~~~ 219 (846)
+.++.+ | ....|+++++||+|+++..
T Consensus 104 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 104 EDLFKLLDAI-DFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp HHHHHHHHHT-TCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred HHHHHHHHHC-CeEEecCCCccccCceEEEECCCCeEEEE
Confidence 112211 1 2245889999999998754
No 257
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=96.30 E-value=0.01 Score=52.76 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=40.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~ 219 (846)
++-++.+||+||++..+ +|+++ .-...+|+++.|+..+.+.+ ..+|...+|..+| +||.++.+
T Consensus 6 I~vYs~~~Cp~C~~aK~----------~L~~~gi~y~~idi~~d~~~~~~~~~---~~~G~~tVP~I~i--~Dg~~l~~ 69 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKT----------ALTANRIAYDEVDIEHNRAAAEFVGS---VNGGNRTVPTVKF--ADGSTLTN 69 (92)
T ss_dssp EEEEECTTCSSHHHHHH----------HHHHTTCCCEEEETTTCHHHHHHHHH---HSSSSSCSCEEEE--TTSCEEES
T ss_pred EEEEcCCCCHhHHHHHH----------HHHhcCCceEEEEcCCCHHHHHHHHH---HcCCCCEeCEEEE--eCCEEEeC
Confidence 34478999999998663 44442 22234677777776554422 2347788998776 67777654
No 258
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=96.28 E-value=0.078 Score=62.59 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 003115 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leD 621 (846)
+-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--. .+ ...+.. ...++.|
T Consensus 151 d~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~~--~~-----~~~~~~~Y~ss~~~D- 212 (614)
T 1g87_A 151 AVCASTAASLASAAVVFKSS--DPTY--------AEKCISHAKNLFDMADKAKSD--AG-----YTAASGYYSSSSFYD- 212 (614)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHHCCC--TT-----CCTTTTTSCCSCSHH-
T ss_pred HHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCCC--CC-----CCcCcCCcCCCCchh-
Confidence 34588899999999999862 1223 267899999999999887421 10 001110 1123333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 622 YAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 622 yA~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
.+++|.+.||.+|||..||+.|++..
T Consensus 213 --El~WAAawLy~ATgd~~Yl~~a~~~~ 238 (614)
T 1g87_A 213 --DLSWAAVWLYLATNDSTYLDKAESYV 238 (614)
T ss_dssp --HHHHHHHHHHHHHCCHHHHHHHHHTG
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45889999999999999999998743
No 259
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=96.21 E-value=0.0064 Score=52.00 Aligned_cols=65 Identities=12% Similarity=-0.036 Sum_probs=41.4
Q ss_pred CEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCC-----CCCCcEEEECCCC
Q 003115 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG-----GGWPLSVFLSPDL 214 (846)
Q Consensus 140 pI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~-----~G~P~~v~l~pdg 214 (846)
+.++.|+++||++|+.+.. +.+.++-.|-.+.||..+.+...+. +...+|. .++|+.++ +|
T Consensus 4 m~v~ly~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~~e----l~~~~g~~~~~~~~vP~i~i---~g 69 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKFYD----EMNQSGKVIFPISTVPQIFI---DD 69 (89)
T ss_dssp CCEEEEECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHHHH----HHHTTTCCSSCCCSSCEEEE---TT
T ss_pred eEEEEEEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHHHH----HHHHhCCCCCCCCccCEEEE---CC
Confidence 3456689999999999764 2334445677777776543322111 2334577 89999865 67
Q ss_pred ceec
Q 003115 215 KPLM 218 (846)
Q Consensus 215 ~~~~ 218 (846)
+.+.
T Consensus 70 ~~i~ 73 (89)
T 3msz_A 70 EHIG 73 (89)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 260
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=96.19 E-value=0.015 Score=51.92 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=42.4
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
-++.|+++||++|+.+.. +.+.++-.|..+.||..+..+. ..+...+..++|..++|+.++ + +|+.+.
T Consensus 23 ~v~ly~~~~Cp~C~~ak~-------~L~~~~i~y~~vdI~~~~~~~~-~~~~~~l~~~~g~~~vP~l~i-~-~~~~ig 90 (103)
T 3nzn_A 23 KVIMYGLSTCVWCKKTKK-------LLTDLGVDFDYVYVDRLEGKEE-EEAVEEVRRFNPSVSFPTTII-N-DEKAIV 90 (103)
T ss_dssp CEEEEECSSCHHHHHHHH-------HHHHHTBCEEEEEGGGCCHHHH-HHHHHHHHHHCTTCCSCEEEE-T-TTEEEE
T ss_pred eEEEEcCCCCchHHHHHH-------HHHHcCCCcEEEEeeccCcccH-HHHHHHHHHhCCCCccCEEEE-C-CCEEEE
Confidence 344589999999999874 2334556788777776432222 223333344568899999876 2 235553
No 261
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=96.16 E-value=0.017 Score=52.79 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.++++.++++.++ |+.+||++|+.+.. .+ +.++-.|..+.||..+.+. ...+.+...+|...+|..
T Consensus 7 ~~~~~~~i~~~~v~v--y~~~~Cp~C~~ak~-~L------~~~~i~~~~~dvd~~~~~~---~~~~~l~~~~g~~tvP~v 74 (114)
T 3h8q_A 7 RRHLVGLIERSRVVI--FSKSYCPHSTRVKE-LF------SSLGVECNVLELDQVDDGA---RVQEVLSEITNQKTVPNI 74 (114)
T ss_dssp HHHHHHHHHHCSEEE--EECTTCHHHHHHHH-HH------HHTTCCCEEEETTTSTTHH---HHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCCEEE--EEcCCCCcHHHHHH-HH------HHcCCCcEEEEecCCCChH---HHHHHHHHHhCCCccCEE
Confidence 456667777666444 89999999998763 22 2334467766666543211 122223334588889998
Q ss_pred EEECCCCceecc
Q 003115 208 VFLSPDLKPLMG 219 (846)
Q Consensus 208 v~l~pdg~~~~~ 219 (846)
++ +|+.+.|
T Consensus 75 fi---~g~~igG 83 (114)
T 3h8q_A 75 FV---NKVHVGG 83 (114)
T ss_dssp EE---TTEEEES
T ss_pred EE---CCEEEeC
Confidence 76 6776643
No 262
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=96.04 E-value=0.0069 Score=58.74 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.5
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHVM 156 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (846)
.||+++|.|+ ++||+.|...
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~ 66 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETE 66 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 4899999997 8999999864
No 263
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=96.02 E-value=0.26 Score=56.98 Aligned_cols=288 Identities=16% Similarity=0.141 Sum_probs=160.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEec
Q 003115 370 WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWT 449 (846)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt 449 (846)
-.|+-||- |-++|.-+.-||.+++++.|++.|.+..+-|+--+-.|.|-=|..++-...... ..+..+. + .
T Consensus 163 ~~VsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~--~~~~~~~--s-~ 233 (538)
T 1x9d_A 163 VDVNLFES----TIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAH--PPRWTSD--S-T 233 (538)
T ss_dssp CEEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEE--CCTTCSE--E-E
T ss_pred ceeehhhe----ehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccC--CCCcCCC--c-e
Confidence 35666775 556888888999999999999999999999998887777755544442210000 0000000 0 0
Q ss_pred HHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 003115 450 SKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVR 529 (846)
Q Consensus 450 ~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~R 529 (846)
.+|+-.+. .+ |.. +++..| .....+..+.+.+.|.+.|
T Consensus 234 lAe~GSl~---LE-F~~------------------------------------LS~LTG--d~~Y~~~a~r~~~~l~~~~ 271 (538)
T 1x9d_A 234 VAEVTSIQ---LE-FRE------------------------------------LSRLTG--DKKFQEAVEKVTQHIHGLS 271 (538)
T ss_dssp HHHHHSSH---HH-HHH------------------------------------HHHHHC--CTHHHHHHHHHHHHHHTCS
T ss_pred ecccccee---ee-HHH------------------------------------HHHHhC--CcHHHHHHHHHHHHHHhcc
Confidence 11110000 00 111 122222 1234455566777777655
Q ss_pred cCCCCC----CCCch-------hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003115 530 SKRPRP----HLDDK-------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (846)
Q Consensus 530 ~~R~~P----~~DdK-------ilt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~ 595 (846)
. +... ++|.. -..+|.|..-| =|.+.+..+|.. .+.|+++=.++++-+.+|
T Consensus 272 ~-~~~GL~p~~i~~~tG~~~~~~~~~lGa~~DS~YEYLlK~~il~g~~--------------d~~y~~my~~a~~~i~~~ 336 (538)
T 1x9d_A 272 G-KKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQ--------------ETQLLEDYVEAIEGVRTH 336 (538)
T ss_dssp C-CBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTSC--------------CHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCcceEEeCCCCCccCCcceeecCCccHHHHHHHHHHHHcCCc--------------hHHHHHHHHHHHHHHHHH
Confidence 2 1111 11111 03345555544 577888777731 268999999999999998
Q ss_pred ccccC--CCeEE-EEecCCCCCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHccccCCCc----cccc
Q 003115 596 LYDEQ--THRLQ-HSFRNGPSKAPGFLDDYAFLISGLLDLYEF-GSGTKWLVWAIELQNTQDELFLDREGGG----YFNT 667 (846)
Q Consensus 596 l~d~~--~G~l~-~~~~dg~~~~~~~leDyA~~i~aLl~LYe~-Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----yf~t 667 (846)
+.... ++..| ....+|.. ....+--+.++-|++.|.-. ..+.++++.|++|.+.+...+....+|- |.+.
T Consensus 337 L~~~~~~~~~~~v~~~~~g~~--~~~~~hL~cF~gG~~aLgg~~~~~~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~~~ 414 (538)
T 1x9d_A 337 LLRHSEPSKLTFVGELAHGRF--SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFN 414 (538)
T ss_dssp TEEECTTTCCEEECEEETTEE--ECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEECC
T ss_pred hccCCCCCCceEEEeccCCcc--CcccchHhhhhhhHHHhcCcccCcHHHHHHHHHHHHHHHHHHHhcccCCCceEEEec
Confidence 75321 22232 22333321 12233345566777777664 4567899999999998877764433441 2222
Q ss_pred CCC---CCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 003115 668 TGE---DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 733 (846)
Q Consensus 668 ~~~---~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~ 733 (846)
..+ .+...++. .|...+= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.|
T Consensus 415 ~~~~~~~~~~~~~~---~d~~y~L-RPE~IES~fylyR~TgD---~~yre~gw~~f~ai~k~~-rt~~G 475 (538)
T 1x9d_A 415 LYPQPGRRDVEVKP---ADRHNLL-RPETVESLFYLYRVTGD---RKYQDWGWEILQSFSRFT-RVPSG 475 (538)
T ss_dssp SSCCTTCCSCBCCG---GGCCBCC-CCHHHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHT-BCTTS
T ss_pred cCCCccccceeeec---cCcccCC-ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhc-ccccC
Confidence 110 11111111 0111100 01688999999999996 899999999999986654 44554
No 264
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=96.01 E-value=0.027 Score=50.54 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCEEEEEec-----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGY-----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~-----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
.+-++...+.+ +|.| |+. +||++|+.+.. .| +.++-.|..| |+++.|++.+.+ ...+|..
T Consensus 7 ~~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~-~L------~~~~i~~~~v--di~~~~~~~~~l----~~~~g~~ 71 (105)
T 2yan_A 7 EERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILE-IL------NSTGVEYETF--DILEDEEVRQGL----KAYSNWP 71 (105)
T ss_dssp HHHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHH-HH------HHHTCCCEEE--EGGGCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHH-HH------HHCCCCeEEE--ECCCCHHHHHHH----HHHHCCC
Confidence 34455555555 5666 444 99999998764 22 2233356555 444456543333 2334788
Q ss_pred CCCcEEEECCCCceecc
Q 003115 203 GWPLSVFLSPDLKPLMG 219 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~ 219 (846)
++|+.+ + +|+.+.+
T Consensus 72 ~vP~v~-i--~g~~igg 85 (105)
T 2yan_A 72 TYPQLY-V--KGELVGG 85 (105)
T ss_dssp SSCEEE-E--TTEEEEC
T ss_pred CCCeEE-E--CCEEEeC
Confidence 999874 3 5776643
No 265
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=96.00 E-value=0.025 Score=57.84 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=18.5
Q ss_pred cCCCEEEEEeccCChhhhhhh
Q 003115 137 RDVPIFLSIGYSTCHWCHVME 157 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me 157 (846)
.||+|+|.|+++||+.|+.|.
T Consensus 55 ~GKvvll~FwAt~C~~c~e~p 75 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTAQYP 75 (215)
T ss_dssp TTSEEEEEEECSSSGGGGGHH
T ss_pred CCCEEEEEEeCCCCCChHhHH
Confidence 589999999999999997543
No 266
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=95.99 E-value=0.72 Score=52.67 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCC--------CCC---cchH---HHHHHHHHHHHHHcCCHHHH
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKA--------PGF---LDDY---AFLISGLLDLYEFGSGTKWL 642 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~--------~~~---leDy---A~~i~aLl~LYe~Tgd~~yL 642 (846)
+++++.|+++++-..........|..-.. +..+.... .++ ...| -.+|+.+.-||++|||+.|+
T Consensus 313 ~~~~~~a~~l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yr 392 (475)
T 2ri9_A 313 QDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYR 392 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcEEEeecCcccccccccccCCCceecccccCCChHHHHHHHHHHHHhCCHHHH
Confidence 78999999998876554432223422111 11111100 000 0112 26899999999999999999
Q ss_pred HHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 643 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 643 ~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
+++.++++.+.++..-+ .||-.-.+ +........++.++| ..+++-|--||-+..+
T Consensus 393 ~~gw~~f~ai~k~~rt~--~G~a~i~d----V~~~~~~~~~D~meS--F~laETLKYlYLLFsd 448 (475)
T 2ri9_A 393 DWVWNAFVAINSTCRTD--SGFAAVSD----VNKANGGSKYDNQES--FLFAEVMKYSYLAHSE 448 (475)
T ss_dssp HHHHHHHHHHHHHTBCS--SSBCCBSC----TTSGGGSSBBSCCCT--HHHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHccc--cCCccccc----ccCCCCCCcCCccch--HHHHHHHHHHHhcccC
Confidence 99999999999988543 34433221 100000222344555 3678888888888765
No 267
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=95.96 E-value=0.011 Score=48.87 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=37.5
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.+.. .+ +.++-.|. .+|.++.|++.+.+ + ..|..+.|+.++ +|+.+.
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~--~~di~~~~~~~~~~----~-~~~~~~vP~l~~---~g~~~~ 62 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKK-AL------DRAGLAYN--TVDISLDDEARDYV----M-ALGYVQAPVVEV---DGEHWS 62 (75)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCE--EEETTTCHHHHHHH----H-HTTCBCCCEEEE---TTEEEE
T ss_pred EEEEeCCCChHHHHHHH-HH------HHcCCCcE--EEECCCCHHHHHHH----H-HcCCCccCEEEE---CCeEEc
Confidence 45689999999998764 22 22233454 45666566544332 2 248889999874 677643
No 268
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.95 E-value=0.2 Score=57.29 Aligned_cols=286 Identities=15% Similarity=0.110 Sum_probs=157.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecH
Q 003115 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (846)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~ 450 (846)
.|+-||- |-++|.-+.-||.+++++.|++.|.+..+.|+--+-.|.|-=|..++-..... +.+ -|..
T Consensus 100 ~vsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g~~-----~~~----~~~~ 166 (478)
T 1nxc_A 100 EVSVFEV----NIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG-----RNW----PWAS 166 (478)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCE-----ECC----TTSG
T ss_pred ccchhhe----ehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccC-----CCC----cccC
Confidence 4666775 66789999999999999999999999999999888777765454444221100 000 0000
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc----hHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003115 451 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNILGECRRKLF 526 (846)
Q Consensus 451 ~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~----~~~a~~~g~~~~~l~~~l~~~r~~L~ 526 (846)
.|.+++....+. ..+++..|- ++..+..+.+++.|.
T Consensus 167 --------------------------------------~~~s~lAe~gsl~LEF~~LS~lTGd--~~Y~~~a~~~~~~l~ 206 (478)
T 1nxc_A 167 --------------------------------------GGSSILAEFGTLHLEFMHLSHLSGD--PVFAEKVMKIRTVLN 206 (478)
T ss_dssp --------------------------------------GGCEEHHHHTTCHHHHHHHHHHHCC--THHHHHHHHHHHHHH
T ss_pred --------------------------------------CCCcccccccchhhhHHHHHHHHCC--hHHHHHHHHHHHHHH
Confidence 001111111110 112222222 223344555666665
Q ss_pred hhhcC----------CCCCCCCchhhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH
Q 003115 527 DVRSK----------RPRPHLDDKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR 593 (846)
Q Consensus 527 ~~R~~----------R~~P~~DdKilt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~ 593 (846)
+.+.. +.--+.+. ..+|.|..-+ =|.+.+..+|+. .+.|+++-.++++-+.
T Consensus 207 ~~~~~~GL~p~~i~~~tg~~~~~--~~~~Ga~~DS~YEYLlK~~il~g~~--------------d~~~~~m~~~a~~~i~ 270 (478)
T 1nxc_A 207 KLDKPEGLYPNYLNPSSGQWGQH--HVSVGGLGDSFYEYLLKAWLMSDKT--------------DLEAKKMYFDAVQAIE 270 (478)
T ss_dssp HSCCGGGCCCSEECTTTCCBCSC--EECSSTTTHHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccccccCCCCCCccCc--eeeecCCCchHHHHHHHHHHHcCCc--------------hHHHHHHHHHHHHHHH
Confidence 53321 00001111 2355555544 567777777641 2789999999999999
Q ss_pred HhccccCC-CeEEE-EecCCCCCCCCCcchHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHccccCCCc----
Q 003115 594 RHLYDEQT-HRLQH-SFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG----TKWLVWAIELQNTQDELFLDREGGG---- 663 (846)
Q Consensus 594 ~~l~d~~~-G~l~~-~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd----~~yL~~A~~L~~~~~~~F~D~~~Gg---- 663 (846)
+|+..... |..+- .+..|.. ....+--+.++-|++.|.-...+ ++|++.|++|.+.+...+....+|-
T Consensus 271 ~~l~~~~~~~~~~v~~~~~~~~--~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~l~~a~~l~~tC~~~y~~~~tgl~PE~ 348 (478)
T 1nxc_A 271 THLIRKSSGGLTYIAEWKGGLL--EHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEA 348 (478)
T ss_dssp HHTEEECTTSCEEECEEETTEE--ECEEETGGGGHHHHHHHTSTTSCTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCCSE
T ss_pred HHhcccCCCCcEEEEeccCCcc--cccccchhhhhHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHhcccCCCCeE
Confidence 99854222 32222 2333321 11122334455677777544332 6899999999999987665544441
Q ss_pred ccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 003115 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 736 (846)
Q Consensus 664 yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 736 (846)
|..... .+...++.. |...| ---..++.+.-|+++||+ +.|++.+.++++++...- +.+.|++.
T Consensus 349 ~~~~~~-~~~~~~~~~---~~~y~-LRPE~iES~fylyR~TgD---~~yre~gw~~f~ai~k~~-r~~~G~a~ 412 (478)
T 1nxc_A 349 FRFDGG-VEAIATRQN---EKYYI-LRPEVIETYMYMWRLTHD---PKYRTWAWEAVEALESHC-RVNGGYSG 412 (478)
T ss_dssp EESSTT-CSSBCCSGG---GCCBC-SCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHT-EETTEECC
T ss_pred EEeccC-ccccccccc---ccccC-CChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-hccccccc
Confidence 222111 111111100 10000 001578899999999996 899999999999986643 44555443
No 269
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=95.92 E-value=0.012 Score=61.02 Aligned_cols=79 Identities=6% Similarity=-0.071 Sum_probs=45.6
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHH---------------------
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~--------------------- 193 (846)
.||+|+|.|++ +||+.|...-. .| .++.+.+. +++..|-|..+. ++..+.|.+
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~-~l--~~l~~~~~~~gv~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 151 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEII-AF--SDRVHEFRAINTEVVACSVDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTH 151 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HH--HHHHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCEEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchH
Confidence 48999999999 99999987432 22 12333332 244444444332 221122211
Q ss_pred -HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003115 194 -YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (846)
Q Consensus 194 -~~~~~~g~~------G~P~~v~l~pdg~~~~~~ 220 (846)
..+. .|.. ..|+++++|++|++++..
T Consensus 152 ~v~~~-ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 152 QISKD-YGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHH-hCCccccCCCccceEEEEcCCCeEEEEE
Confidence 1111 2332 479999999999998764
No 270
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=95.86 E-value=0.012 Score=59.83 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.4
Q ss_pred cCCCEEEEEe-ccCChhhhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHVME 157 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me 157 (846)
.||+|+|.|+ ++||+.|...-
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~ 68 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEI 68 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHH
Confidence 4899999999 99999998643
No 271
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=95.84 E-value=0.042 Score=56.77 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=26.7
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003115 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
.|.++|+|++|++.+....-. ..+.+.+-++|+.+..+
T Consensus 137 ~p~tfvID~dG~I~~~~~~~~---~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 137 SPAIILADAANVVHYSERLAN---TRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CCEEEEECTTCBEEEEEECSB---TTCCCCHHHHHHHHHHH
T ss_pred cCEEEEEcCCCEEEEEEecCC---CCCCCCHHHHHHHHHHh
Confidence 699999999999987632211 22346788888777655
No 272
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=95.80 E-value=0.018 Score=48.46 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=37.7
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.+.. .+ +..+-.|..|.|| +.++....+. ..+|..++|+.++ +|+.+.
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~~~~i~--~~~~~~~~~~----~~~~~~~vP~l~~---~g~~i~ 63 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKA-LL------SSKGVSFQELPID--GNAAKREEMI----KRSGRTTVPQIFI---DAQHIG 63 (82)
T ss_dssp EEEEECSSCHHHHHHHH-HH------HHHTCCCEEEECT--TCSHHHHHHH----HHHSSCCSCEEEE---TTEEEE
T ss_pred EEEEECCCChhHHHHHH-HH------HHCCCCcEEEECC--CCHHHHHHHH----HHhCCCCcCEEEE---CCEEEe
Confidence 44589999999998764 22 2233356655554 4455443332 2348889999854 677664
No 273
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=95.76 E-value=0.011 Score=56.55 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=41.6
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~--------------~~~~~ 199 (846)
.+|+|+|.|+ ++||+.|...-. .|+ ++.+.+.+ .+|.|-+| .++..+.|.+. +....
T Consensus 34 k~~~vvl~f~~~~~c~~C~~~~~-~l~--~~~~~~~~~~~vv~is~d---~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 107 (159)
T 2a4v_A 34 NNRVVVFFVYPRASTPGSTRQAS-GFR--DNYQELKEYAAVFGLSAD---SVTSQKKFQSKQNLPYHLLSDPKREFIGLL 107 (159)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHH-HHH--HHHHHHTTTCEEEEEESC---CHHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred CCCeEEEEEcCCCCCCCHHHHHH-HHH--HHHHHHHhCCcEEEEeCC---CHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 3458999985 999999986432 221 22333322 45555554 23322223211 01112
Q ss_pred CCCCCC------cEEEECCCCceecc
Q 003115 200 GGGGWP------LSVFLSPDLKPLMG 219 (846)
Q Consensus 200 g~~G~P------~~v~l~pdg~~~~~ 219 (846)
|..+.| +++++ ++|++.+.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred CCcccccCCccceEEEE-cCCEEEEE
Confidence 555566 77888 99988765
No 274
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=95.75 E-value=0.011 Score=64.41 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=50.8
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC--CCccHHHHHHHHHHHhcCCCC--CCcEEEE
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGG--WPLSVFL 210 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e--e~p~~~~~y~~~~~~~~g~~G--~P~~v~l 210 (846)
.+..++++|.|+++||..|+.+.. .| .++++.++..+..+.||.+ +.+.+.+.| |..+ +|+.+++
T Consensus 132 ~~~~~~~~v~F~~~~~~~~~~~~~-~~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~f--------gi~~~~~P~~~~~ 200 (361)
T 3uem_A 132 GGEIKTHILLFLPKSVSDYDGKLS-NF--KTAAESFKGKILFIFIDSDHTDNQRILEFF--------GLKKEECPAVRLI 200 (361)
T ss_dssp SCSCCEEEEEECCSSSSSHHHHHH-HH--HHHHGGGTTTCEEEEECTTSGGGHHHHHHT--------TCCTTTCSEEEEE
T ss_pred cCCCCcEEEEEEeCCchhHHHHHH-HH--HHHHHHccCceEEEEecCChHHHHHHHHHc--------CCCccCCccEEEE
Confidence 344567899999999999999875 22 4567777667888889987 455554444 6655 9999999
Q ss_pred CCCCc
Q 003115 211 SPDLK 215 (846)
Q Consensus 211 ~pdg~ 215 (846)
+.++.
T Consensus 201 ~~~~~ 205 (361)
T 3uem_A 201 TLEEE 205 (361)
T ss_dssp ECC--
T ss_pred EcCCc
Confidence 98543
No 275
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=95.66 E-value=0.047 Score=55.39 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=17.8
Q ss_pred cCCCEEEEEeccCChhhhhh
Q 003115 137 RDVPIFLSIGYSTCHWCHVM 156 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~m 156 (846)
.||+|+|.|+++||+.|..|
T Consensus 37 kGKvvll~F~At~C~~c~e~ 56 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLTGQY 56 (207)
T ss_dssp TTSEEEEEEECSSSTTTTHH
T ss_pred CCCEEEEEEeCCCCCChHHH
Confidence 58999999999999999544
No 276
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=95.62 E-value=0.03 Score=52.63 Aligned_cols=79 Identities=10% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
.+.++.+.++++ | +.|+.+||++|+.. .. .+...... +-.|..|.||.++ +- ....+.+...+|..++|.
T Consensus 27 ~~~v~~~i~~~~-V-vvy~~~~Cp~C~~a~k~-~L~~~~~~---~i~~~~vdvd~~~--~~-~~~~~~L~~~~g~~tVP~ 97 (129)
T 3ctg_A 27 VAHVKDLIGQKE-V-FVAAKTYCPYCKATLST-LFQELNVP---KSKALVLELDEMS--NG-SEIQDALEEISGQKTVPN 97 (129)
T ss_dssp HHHHHHHHHHSS-E-EEEECTTCHHHHHHHHH-HHTTSCCC---GGGEEEEEGGGST--TH-HHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHcCCC-E-EEEECCCCCchHHHHHH-HHHhcCcc---CCCcEEEEccccC--CH-HHHHHHHHHHhCCCCCCE
Confidence 455556666665 3 45789999999987 43 33322100 1347777776653 21 112222333458889998
Q ss_pred EEEECCCCceec
Q 003115 207 SVFLSPDLKPLM 218 (846)
Q Consensus 207 ~v~l~pdg~~~~ 218 (846)
. |+ +|+.+.
T Consensus 98 v-fi--~g~~ig 106 (129)
T 3ctg_A 98 V-YI--NGKHIG 106 (129)
T ss_dssp E-EE--TTEEEE
T ss_pred E-EE--CCEEEc
Confidence 5 44 456554
No 277
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=95.61 E-value=0.27 Score=56.53 Aligned_cols=261 Identities=15% Similarity=0.087 Sum_probs=132.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc---CCCCceeeeccCCCccccccccccCCceEEec
Q 003115 373 PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI---GPGGEIFSAEDADSAETEGATRKKEGAFYVWT 449 (846)
Q Consensus 373 PHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~---~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt 449 (846)
++-+-.+-.-+=|.--|....++|||+.|.++|+++.+.|.+.-. ...|-+-..+|+++.. .-+..+.|.
T Consensus 169 ~~~~~~~Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~-------~~~~~~~~G 241 (503)
T 1hcu_A 169 GASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGT-------FQDSSGSWS 241 (503)
T ss_dssp CCSEEEHHHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCC-------BCCCEECSS
T ss_pred CCCccccccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCc-------ccCCeeeec
Confidence 333445666566666788889999999999999999999886321 1345444467766521 112222222
Q ss_pred HHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003115 450 SKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 528 (846)
Q Consensus 450 ~~Ei~~~L~~~-~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~~~ 528 (846)
+.++. .+.+.+.|=+..+. ...+ .+...+.++.+++.|+..
T Consensus 242 ------a~~DS~YEYLlK~~il~g~~-------------------------~~~y-------~~m~~~a~~~i~~~l~~~ 283 (503)
T 1hcu_A 242 ------GLMDSFYEYLIKMYLYDPVA-------------------------FAHY-------KDRWVLGADSTIGHLGSH 283 (503)
T ss_dssp ------TTTHHHHHHHHHHHHHCTTT-------------------------THHH-------HHHHHHHHHHHHHHTEEC
T ss_pred ------CCCccHHHHHHHHHHHcCCc-------------------------hHHH-------HHHHHHHHHHHHHHhccC
Confidence 11111 12222222221100 0001 122334555566666532
Q ss_pred hcCCC-CCCCCc-----------hhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003115 529 RSKRP-RPHLDD-----------KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 596 (846)
Q Consensus 529 R~~R~-~P~~Dd-----------Kilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l 596 (846)
...+. -.++.+ -..+-|-|+. +-++.+.+. +++++.|+++++-.....
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~G~~----aLgg~~~~~----------------~~~~~~a~~L~~tC~~~y 343 (503)
T 1hcu_A 284 PSTRKDLTFLSSYNGQSTSPNSGHLASFGGGNF----ILGGILLNE----------------QKYIDFGIKLASSYFGTY 343 (503)
T ss_dssp BTTCTTCCEECEEETTEEESEEEGGGGGHHHHH----HHHHHHHTC----------------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEeccCCccccccchhhhhhhHHH----HhcCccccc----------------HHHHHHHHHHHHHHHHHH
Confidence 11110 012111 1223333333 333455543 789999999988765543
Q ss_pred cccCCCeEEEE--ecCCC--C--CCC----------CC---cchHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003115 597 YDEQTHRLQHS--FRNGP--S--KAP----------GF---LDDYA---FLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (846)
Q Consensus 597 ~d~~~G~l~~~--~~dg~--~--~~~----------~~---leDyA---~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (846)
.....|..-.. +.... . ... ++ ...|- .+|+.+.-||++|||+.|++++.++++.+.+
T Consensus 344 ~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k 423 (503)
T 1hcu_A 344 TQTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIED 423 (503)
T ss_dssp HTSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSCEEEECCBCCCCHHHHHHHHHHHHHCBHHHHHHHHHHHHHHHH
T ss_pred HhCccCCCceEEEeecCccccccCCcccccccccCCCceeccccccCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 32223321111 11111 0 000 00 00121 6899999999999999999999999999998
Q ss_pred HccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCC
Q 003115 655 LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (846)
Q Consensus 655 ~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (846)
+..-+ .||-.-.+ +........++.++| ..+++-|--||-+..+
T Consensus 424 ~~r~~--~Gya~i~d----V~~~~~~~~~D~meS--F~laETLKYlYLLFsd 467 (503)
T 1hcu_A 424 ACRAG--SAYSSIND----VTQANGGGASDDMES--FWFAEALKYAYLIFAE 467 (503)
T ss_dssp HHEET--TEECCBSC----TTSTTCSCBCSCBCH--HHHHTHHHHHHHHHSC
T ss_pred HHhhc--cCCccccc----ccCCCCCCcCCccch--HHHHHHHHHHheeccC
Confidence 88543 34433221 100000122333333 3566666666666654
No 278
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=95.55 E-value=0.046 Score=54.53 Aligned_cols=42 Identities=17% Similarity=0.000 Sum_probs=29.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ 181 (846)
.+|++++.|+..||++|+.|+... +++.+.+.++++.++++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l---~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVL---SKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHTTCCTTEEEEEEEC
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHCCCCeEEEEecC
Confidence 368899999999999999998522 344433333455655554
No 279
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=95.53 E-value=0.028 Score=55.54 Aligned_cols=79 Identities=6% Similarity=-0.167 Sum_probs=45.1
Q ss_pred cCCCEEEEEec-cCChhhhhhhhcccCCHHHHHHHh-cCeEEEEEcCCCCccHHHHHHHHH----H--------------
Q 003115 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV----Q-------------- 196 (846)
Q Consensus 137 e~KpI~l~~g~-~wC~wC~~me~etf~d~eVa~~ln-~~FV~vkvD~ee~p~~~~~y~~~~----~-------------- 196 (846)
.||+|+|.|++ +||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.. .
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 104 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELG-DVA--DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALT 104 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSEEEECTTSHHH
T ss_pred CCCeEEEEEECCCCCCccHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHcCcccCCceeEEECCchHHH
Confidence 48999999985 99999986432 121 2222222 345555454432 33223332221 0
Q ss_pred HhcCCC----C--CCcEEEECCCCceecc
Q 003115 197 ALYGGG----G--WPLSVFLSPDLKPLMG 219 (846)
Q Consensus 197 ~~~g~~----G--~P~~v~l~pdg~~~~~ 219 (846)
...|.. | .|+++++|++|++++.
T Consensus 105 ~~ygv~~~~~g~~~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 105 RNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence 011322 2 6999999999998875
No 280
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=95.46 E-value=0.11 Score=58.34 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHH
Q 003115 548 LVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLIS 627 (846)
Q Consensus 548 lmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~ 627 (846)
=++.+|..++++++| ++|++.|.++++.+++. |.+ ....+...+.|=.+.
T Consensus 293 Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~------g~~--------~~~~~lChG~aG~~~ 342 (411)
T 3e6u_A 293 GVIYMLIQAYKVFRE----------------EKYLCDAYQCADVIWQY------GLL--------KKGYGLCHGSAGNAY 342 (411)
T ss_dssp HHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHH------CSB--------TTCSCSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHhc------Ccc--------CCCCceecChHHHHH
Confidence 345568888999987 78999999988777553 111 112466677888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 628 GLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 628 aLl~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
.++.+|+.|++++|+++|.++++.+.+.
T Consensus 343 ~ll~~~~~t~~~~~~~~A~~~~~~~~~~ 370 (411)
T 3e6u_A 343 AFLTLYNLTQDMKYLYRACKFAEWCLEY 370 (411)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
No 281
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.45 E-value=0.14 Score=58.52 Aligned_cols=158 Identities=10% Similarity=0.045 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC-----
Q 003115 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP----- 616 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~--~~~dg~~~~~----- 616 (846)
.=|..++-+|.-||.+.+| +.+|+.|+++++.|.-.|-.| +|-=+. ..+.|.+...
T Consensus 105 ETtIR~LGGLLSAy~Lsgd----------------~~lL~kA~dLad~LlpAFdTp-tgiP~~~vnl~~g~~~~~~~~~~ 167 (478)
T 1nxc_A 105 EVNIRFVGGLLSAYYLSGE----------------EIFRKKAVELGVKLLPAFHTP-SGIPWALLNMKSGIGRNWPWASG 167 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHGGGGCSS-SSCCCSEEETTTCCEECCTTSGG
T ss_pred heehhhhhhhhhhhhccCC----------------HHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccccCCCCcccCC
Confidence 3468889999999999998 789999999999999888543 442111 1234422111
Q ss_pred --CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCc---ccccCCCCCcccccccCCCCCCCCChHH
Q 003115 617 --GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (846)
Q Consensus 617 --~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (846)
..+-..+.++.=+..|.++|||++|.+.|.++.+.+.+.- . ..|- +.+... +... ..+...=++.-
T Consensus 168 ~~s~lAe~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~-~~GL~p~~i~~~t--g~~~-----~~~~~~Ga~~D 238 (478)
T 1nxc_A 168 GSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLD-K-PEGLYPNYLNPSS--GQWG-----QHHVSVGGLGD 238 (478)
T ss_dssp GCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSC-C-GGGCCCSEECTTT--CCBC-----SCEECSSTTTH
T ss_pred CCcccccccchhhhHHHHHHHHCChHHHHHHHHHHHHHHhcC-C-CCCccccccCCCC--CCcc-----CceeeecCCCc
Confidence 1233344456667899999999999999999888776431 1 1221 111111 0000 00111112223
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003115 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (846)
Q Consensus 692 v~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~ 728 (846)
..-+-|++.+.++|+. ++.|++.-++.++.+...+.
T Consensus 239 S~YEYLlK~~il~g~~-d~~~~~m~~~a~~~i~~~l~ 274 (478)
T 1nxc_A 239 SFYEYLLKAWLMSDKT-DLEAKKMYFDAVQAIETHLI 274 (478)
T ss_dssp HHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHTE
T ss_pred hHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhc
Confidence 5778899999999853 47899888888888776664
No 282
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=95.34 E-value=0.062 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.0
Q ss_pred cCCCEEEEEeccCChhhhhhhhcc
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~et 160 (846)
.+|.+++.|+..||+||+.++...
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l 47 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKL 47 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCeEEEEEECCCChhHhhhhHHH
Confidence 356788999999999999998643
No 283
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=95.28 E-value=0.16 Score=57.61 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=66.6
Q ss_pred cCCCC---CCCCCCCChhHH--HHHHHhhhhccccC-CCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEc-----C
Q 003115 299 RFGGF---GSAPKFPRPVEI--QMMLYHSKKLEDTG-KSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 367 (846)
Q Consensus 299 ~~GGf---g~apKFP~~~~l--~~ll~~~~~~~~~~-~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsv-----D 367 (846)
..||+ |.--||-.|+.. ..|+..+...++.- ....-+++++.+.--+|=|.+- +.-.|+||. .| |
T Consensus 50 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~D~llk~---~~~~~~~y~-qVgd~~~D 125 (441)
T 1ia6_A 50 LTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKS---HPNSTTFYY-QVGEGNAD 125 (441)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHT---CCSTTCEEE-EESCHHHH
T ss_pred CCCCeeeCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHHHHHHHh---ccCCCcEEE-EeCCCCcc
Confidence 47888 666888776543 22322111111000 0112468888888888887772 223345553 33 2
Q ss_pred -CCCCCCCCchh---H----------HH-HHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 003115 368 -ERWHVPHFEKM---L----------YD-QGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 415 (846)
Q Consensus 368 -~~W~vPHFEKM---L----------yD-NA~Ll~~ya~Ay~~t~~--~----~y~~~A~~t~~fl~r~ 415 (846)
.-|..|.-.++ . .| .+..+.+++.|++++++ + .+++.|++..+|..++
T Consensus 126 h~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 194 (441)
T 1ia6_A 126 HTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKAN 194 (441)
T ss_dssp TTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 24555533211 1 24 67899999999999974 4 4577889999998874
No 284
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=95.25 E-value=0.027 Score=59.12 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=17.8
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHVM 156 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (846)
.||+|+|.|+ ++||..|...
T Consensus 90 kGK~vvL~F~~a~~cp~C~~e 110 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTE 110 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 5899999998 9999999874
No 285
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=95.22 E-value=0.035 Score=47.82 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=35.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~-g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+.+.. .+ +.++-.|..| |.+ ++....+ ...+ |..++|+.++ +|+.+.
T Consensus 8 v~~y~~~~C~~C~~~~~-~L------~~~~i~~~~v--dv~--~~~~~~l----~~~~~~~~~vP~l~~---~g~~i~ 67 (89)
T 2klx_A 8 IILYTRPNCPYCKRARD-LL------DKKGVKYTDI--DAS--TSLRQEM----VQRANGRNTFPQIFI---GDYHVG 67 (89)
T ss_dssp EEEESCSCCTTTHHHHH-HH------HHHTCCEEEE--CSC--HHHHHHH----HHHHHSSCCSCEEEE---TTEECC
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEEE--ECC--HHHHHHH----HHHhCCCCCcCEEEE---CCEEEe
Confidence 55689999999998764 22 2233356544 444 3322222 2234 7889999754 677654
No 286
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=95.16 E-value=0.042 Score=47.49 Aligned_cols=66 Identities=26% Similarity=0.271 Sum_probs=40.0
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+++.. +.+.++-.|..+.||..+..+ +......+...+|..+.|+.++ +|+.+.
T Consensus 14 v~ly~~~~Cp~C~~~~~-------~L~~~gi~~~~~~v~~~~~~~-~~~~~~~l~~~~g~~~vP~l~~---~g~~i~ 79 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLE-------FLKREGVDFEVIWIDKLEGEE-RKKVIEKVHSISGSYSVPVVVK---GDKHVL 79 (92)
T ss_dssp SEEEECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCCHHH-HHHHHHHHHHHHSSSCSCEEEE---TTEEEE
T ss_pred EEEEECCCChHHHHHHH-------HHHHcCCCcEEEEeeeCCccc-hHHHHHHHHHhcCCCCcCEEEE---CCEEEe
Confidence 34489999999999763 233455578877777532111 1111122223358889999887 677654
No 287
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=95.12 E-value=0.66 Score=53.42 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=156.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHcc------CChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccccccccCC
Q 003115 371 HVPHFEKMLYDQGQLANVYLDAFSLT------KDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEG 443 (846)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t------~~~~y~~~A~~t~~fl~r~m~-~~~Ggfysa~DADs~~~~~~~~~~EG 443 (846)
.|+-||- |-++|.-+.-||.++ +++.|++.|.+..+-|+--+- .|.|-=|..++-..... ..+
T Consensus 94 ~VsvFET----tIR~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~~-----~~~- 163 (511)
T 1dl2_A 94 EVNVFET----TIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQA-----VKN- 163 (511)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCE-----ECC-
T ss_pred eechhhe----ehhhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCCC-----CCC-
Confidence 4676875 445888888888888 899999999999999998887 67775555444221000 000
Q ss_pred ceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc-hH---HHHHcCCCHHHHHHHHH
Q 003115 444 AFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SA---SASKLGMPLEKYLNILG 519 (846)
Q Consensus 444 ayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~-~~---~a~~~g~~~~~l~~~l~ 519 (846)
-|. .|.+++....+. -| +++..| .++..+..+
T Consensus 164 ---~~~---------------------------------------~~~s~~Ae~gSl~LEF~~LS~LTG--d~~Y~~~a~ 199 (511)
T 1dl2_A 164 ---HAD---------------------------------------GGASSTAEFTTLQMEFKYLAYLTG--NRTYWELVE 199 (511)
T ss_dssp ---SSG---------------------------------------GGCEEHHHHSSCHHHHHHHHHHHT--CHHHHHHHH
T ss_pred ---CCC---------------------------------------CcccccccccceeeeHHHHHHHHC--ChHHHHHHH
Confidence 000 001111111110 01 122222 133444555
Q ss_pred HHHHHHHhhhcC--CC------------CCCCCchhhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHH
Q 003115 520 ECRRKLFDVRSK--RP------------RPHLDDKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYM 582 (846)
Q Consensus 520 ~~r~~L~~~R~~--R~------------~P~~DdKilt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yL 582 (846)
.+.+.|.+.|.. +. --+.+. ..+|.|..-| =|.+.+..++| +.|+
T Consensus 200 r~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~~--~~~lGa~~DS~YEYLlK~~il~~d----------------~~y~ 261 (511)
T 1dl2_A 200 RVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGAS--TIRFGSRGDSFYEYLLKQYLLTHE----------------TLYY 261 (511)
T ss_dssp TTHHHHHHHHTHHHHHTTCCBSEECTTTCCBCSC--CBCSSTTTHHHHHHHHHHHHHHCC----------------HHHH
T ss_pred HHHHHHHhcccccCCCCCCcceEEcCCCCCccCC--eeeecCCCCcHHHHHHHHHHhcCC----------------HHHH
Confidence 556666655411 00 011211 2345555544 57777777765 6899
Q ss_pred HHHHHHHHHHHHhccccC--CCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcC------------CHHHHHHHH
Q 003115 583 EVAESAASFIRRHLYDEQ--THRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGS------------GTKWLVWAI 646 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~--~G~l~~~-~~dg~~-~~~~~leDyA~~i~aLl~LYe~Tg------------d~~yL~~A~ 646 (846)
++=.++++-+.+|+.... .+.++.. ...+.. ......+--+.++-|++.|.-..+ ++++++.|+
T Consensus 262 ~m~~~a~~~i~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~hL~cF~gG~~aLg~~~~~~~~~a~~~~~~~~~~~~~a~ 341 (511)
T 1dl2_A 262 DLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAK 341 (511)
T ss_dssp HHHHHHHHHHHHHTEEECTTTCCEEECBBTTCTTSCCBCEEEGGGGGHHHHHHHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCcEEEEEeecCCCCccccccchhhhchhHHHHhccccCCChhhhhhcccccHHHHHHHH
Confidence 999999999999986421 2323322 221111 111223333555678887775322 347999999
Q ss_pred HHHHHHHHHccccCCCc----ccccCCCC----------CcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 003115 647 ELQNTQDELFLDREGGG----YFNTTGED----------PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 712 (846)
Q Consensus 647 ~L~~~~~~~F~D~~~Gg----yf~t~~~~----------~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y 712 (846)
+|.+.+..-+....+|- |....... .+..++. .|...| ---..++.+.-|+++||+ +.|
T Consensus 342 ~l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~d~~~~~---~d~~y~-LRPE~iES~fylyR~TgD---~~y 414 (511)
T 1dl2_A 342 GITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKP---LDRHNL-QRPETVESIMFMYHLSHD---HKY 414 (511)
T ss_dssp HHHHHHHHHHHTSTTSCCCSEEEECCSCCC-CCCEECSSSSEEECG---GGCCBC-CCCHHHHHHHHHHHHHCC---THH
T ss_pred HHHHHHHHHHhcCccCCCceEEEeecCCccccccccccccceeecc---CCcccC-cCHHHHHHHHHHHHHcCC---HHH
Confidence 99999887765444442 22221110 0000100 011110 001578999999999996 899
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 003115 713 RQNAEHSLAVFETRLKDMAMA 733 (846)
Q Consensus 713 ~~~A~~~l~~~~~~i~~~p~~ 733 (846)
++.+.++++++.... +.+.|
T Consensus 415 re~gw~~f~ai~k~~-rt~~G 434 (511)
T 1dl2_A 415 REWGAEIATSFFENT-CVDCN 434 (511)
T ss_dssp HHHHHHHHHHHHHHH-EESTT
T ss_pred HHHHHHHHHHHHHHh-ccccC
Confidence 999999999986654 34444
No 288
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=95.12 E-value=0.017 Score=58.02 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=50.8
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHh--cCeEEEEEcCCCCccHHHHH-----------------HHHHH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQ 196 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln--~~FV~vkvD~ee~p~~~~~y-----------------~~~~~ 196 (846)
.||+|+|.|+ +.||..|...- +++.++.+ +++..|-|..+. ++..+.| .+..+
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDL-PFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSC-HHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCC-HHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 4899999998 68999998743 33333333 344444443321 1110000 01111
Q ss_pred HhcCC-------CC--CCcEEEECCCCceeccc-cccCCCCCCCcccHHHHHHHH
Q 003115 197 ALYGG-------GG--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (846)
Q Consensus 197 ~~~g~-------~G--~P~~v~l~pdg~~~~~~-tY~p~~~~~~~~~f~~~L~~i 241 (846)
.+ |. .| .|+++++|++|++++.. ++-. ...+.+.++|+.+
T Consensus 150 ~y-gv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~----~~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 AY-GVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEI----TTEPNYDAALAAL 199 (200)
T ss_dssp HT-TCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBT----TSCCCHHHHHHHH
T ss_pred Hh-CceeecccCCCccccEEEEECCCCeEEEEEecCCc----ccCCCHHHHHHhh
Confidence 11 22 23 59999999999998753 2211 1235677777654
No 289
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=95.11 E-value=0.048 Score=49.29 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003115 131 FAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (846)
Q Consensus 131 l~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~ 206 (846)
++.+-+.+| |.|+..+ +||++|+.+.+ .| +.++-.|. .+|+++.|++.+.+ ..++|..++|.
T Consensus 8 ~~~~i~~~~-vvvy~~g~~~~~~Cp~C~~ak~-~L------~~~~i~~~--~vdi~~~~~~~~~l----~~~~g~~~vP~ 73 (109)
T 1wik_A 8 LKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-IL------NSTGVEYE--TFDILEDEEVRQGL----KTFSNWPTYPQ 73 (109)
T ss_dssp HHHHHTTSS-EEEEESSTTTCCCSSTHHHHHH-HH------HHTCSCEE--EEESSSCHHHHHHH----HHHHSCCSSCE
T ss_pred HHHHhccCC-EEEEEecCCCCCCCchHHHHHH-HH------HHcCCCeE--EEECCCCHHHHHHH----HHHhCCCCCCE
Confidence 444445555 6554433 99999998764 22 22233454 45555556544433 23357788997
Q ss_pred EEEECCCCceec
Q 003115 207 SVFLSPDLKPLM 218 (846)
Q Consensus 207 ~v~l~pdg~~~~ 218 (846)
. |+ +|+.+.
T Consensus 74 i-fi--~g~~ig 82 (109)
T 1wik_A 74 L-YV--RGDLVG 82 (109)
T ss_dssp E-EC--SSSEEE
T ss_pred E-EE--CCEEEc
Confidence 4 44 456553
No 290
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=95.05 E-value=0.061 Score=48.00 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCcee
Q 003115 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 139 KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~-g~~G~P~~v~l~pdg~~~ 217 (846)
+.-++-|+++||++|+++.+ .| +.++-.|..| |+++.|+..+.+ ..++ |..++|+.+ + +|+.+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~-~L------~~~~i~y~~i--dI~~~~~~~~~l----~~~~~g~~~vP~if-i--~g~~i 78 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALA-LL------KRKGVEFQEY--CIDGDNEAREAM----AARANGKRSLPQIF-I--DDQHI 78 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHH-HH------HHHTCCCEEE--ECTTCHHHHHHH----HHHTTTCCCSCEEE-E--TTEEE
T ss_pred CCCEEEEEcCCChhHHHHHH-HH------HHCCCCCEEE--EcCCCHHHHHHH----HHHhCCCCCCCEEE-E--CCEEE
Confidence 33344589999999999874 22 3334456554 555556544333 3344 788999764 4 56666
Q ss_pred cc
Q 003115 218 MG 219 (846)
Q Consensus 218 ~~ 219 (846)
.+
T Consensus 79 gG 80 (99)
T 3qmx_A 79 GG 80 (99)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 291
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=94.93 E-value=0.055 Score=58.78 Aligned_cols=133 Identities=8% Similarity=-0.047 Sum_probs=69.9
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHH--------------HHHhcCC
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQALYGG 201 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~--------------~~~~~g~ 201 (846)
.||+|+|.|+ .+||+.|..- -..|+ +.-.+++..|=|..+ .++-.+.|.+. +....|+
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~e-~~~~~-----~~~~~~~~v~gis~D-~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv 95 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTRE-AVEFS-----RENFEKAQVVGISRD-SVEALKRFKEKNDLKVTLLSDPEGILHEFFNV 95 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHHH-HHHHH-----HSCCTTEEEEEEESC-CHHHHHHHHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCeEEEEEECCCCCCCCHHH-HHHHH-----HHhhCCCEEEEEeCC-CHHHHHHHHHhhCCceEEEEcCchHHHHhcCC
Confidence 5899999998 6899999752 11221 111123444444433 22222222211 0011243
Q ss_pred ----CCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 003115 202 ----GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLP 277 (846)
Q Consensus 202 ----~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 277 (846)
...|+++|+|++|++.+.-.-..+. ....++|+.+.+. .+.-..+.+.|+...+... =.+
T Consensus 96 ~~~~~~~r~tfiId~~G~i~~~~~~v~~~-----~h~~~~l~~~~~~--------~~~~~~~~~~I~~RRSiR~---F~~ 159 (322)
T 4eo3_A 96 LENGKTVRSTFLIDRWGFVRKEWRRVKVE-----GHVQEVKEALDRL--------IEEDLSLNKHIEWRRARRA---LKK 159 (322)
T ss_dssp EETTEECCEEEEECTTSBEEEEEESCCST-----THHHHHHHHHHHH--------HHHHTSCCHHHHHCCCCCC---BCC
T ss_pred CCCCcCccEEEEECCCCEEEEEEeCCCcc-----ccHHHHHHHHhhh--------chhhhHHHHHHHhhhccCC---cCc
Confidence 2368999999999887642112222 2577788777744 2222345566665544321 112
Q ss_pred CCCCHHHHHHHHHHH
Q 003115 278 DELPQNALRLCAEQL 292 (846)
Q Consensus 278 ~~~~~~~~~~~~~~l 292 (846)
..++++.++++++.-
T Consensus 160 ~~V~~e~l~~ileaA 174 (322)
T 4eo3_A 160 DRVPREELELLIKAA 174 (322)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 345778888877654
No 292
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=94.86 E-value=0.05 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.1
Q ss_pred cCCCEEEEEeccCChhhhhhhhc
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~e 159 (846)
.+|++++.|+..||+||+.++..
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~ 43 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPL 43 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHH
T ss_pred CCCcEEEEEECCCChhHHHHhHH
Confidence 47889999999999999998753
No 293
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=94.84 E-value=0.23 Score=57.18 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCchh-hhchHHHHHHHHHHHHHHh------hhhhhhhcccCCCCCCChHHHHHHH
Q 003115 513 KYLNILGECRRKLFDVRSKRPRPHLDDKV-IVSWNGLVISSFARASKIL------KSEAESAMFNFPVVGSDRKEYMEVA 585 (846)
Q Consensus 513 ~l~~~l~~~r~~L~~~R~~R~~P~~DdKi-lt~WNglmI~ALa~A~~v~------~d~~~~~~~~~~~~~~~~~~yLe~A 585 (846)
.+.+..+++++.+.+.-+-. .|..| +-.=|..++-+|.-||... +| +.+|+.|
T Consensus 71 gl~~Ef~~A~~~V~~~l~F~----~d~~VsvFETtIR~LGGLLSAy~Ls~~~~~~~d----------------~~lL~kA 130 (511)
T 1dl2_A 71 EFEAEIQRSEHWINDVLDFD----IDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNK----------------TVYLNKA 130 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----CSSEEEHHHHHHHHHHHHHHHHHHHHHHTCSCH----------------HHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCC----CCceechhheehhhhhhhhhHHHhcccccCCCc----------------HHHHHHH
Confidence 45555666666654421110 12111 2223688899999999998 55 7899999
Q ss_pred HHHHHHHHHhccccCCCeEEEE--ecCCCCCCCC------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPG------FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~~~------~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
+++++.|.-.|-+..+|.=+.. .+.|.+.... .+-..+-++.=+..|.++|||++|.+.|+++.+.+.+.--
T Consensus 131 ~dLadrLlpAFd~TptgiP~~~vnl~~g~~~~~~~~~~~s~~Ae~gSl~LEF~~LS~LTGd~~Y~~~a~r~~~~l~~~~~ 210 (511)
T 1dl2_A 131 IDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNND 210 (511)
T ss_dssp HHHHHHHHGGGGSSSSSCCCSEEETTTCCEECCSSGGGCEEHHHHSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCCCCCceeecccCCCCCCCCCCcccccccccceeeeHHHHHHHHCChHHHHHHHHHHHHHHhccc
Confidence 9999999988851334532211 2344321111 1223334566688899999999999999999888776420
Q ss_pred --ccCCCc---ccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 003115 658 --DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (846)
Q Consensus 658 --D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 729 (846)
.+..|- +.+... +... ..+..+=++.-..-+-|++.+.++++ +.|++.-++.++.+...+.+
T Consensus 211 ~~~~~~GL~p~~i~~~t--g~~~-----~~~~~lGa~~DS~YEYLlK~~il~~d---~~y~~m~~~a~~~i~~~L~~ 277 (511)
T 1dl2_A 211 LLNTYDGLVPIYTFPDT--GKFG-----ASTIRFGSRGDSFYEYLLKQYLLTHE---TLYYDLYRKSMEGMKKHLLA 277 (511)
T ss_dssp HHHHHTTCCBSEECTTT--CCBC-----SCCBCSSTTTHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTEE
T ss_pred ccCCCCCCcceEEcCCC--CCcc-----CCeeeecCCCCcHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcc
Confidence 011221 221111 0000 00111112333567889999999853 78988888888887766654
No 294
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.093 Score=49.30 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.++++.+.++ ++-|+.+||++|+...+ .|++. .-++-.|..|.||.++.++. .+.++...+|...+|..
T Consensus 4 ~~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~-lL~~~---~~~~v~~~~idid~~~d~~~---~~~~l~~~~G~~tVP~I 74 (127)
T 3l4n_A 4 QKEYSLILDLSP--IIIFSKSTCSYSKGMKE-LLENE---YQFIPNYYIIELDKHGHGEE---LQEYIKLVTGRGTVPNL 74 (127)
T ss_dssp HHHHHHHHTSCS--EEEEECTTCHHHHHHHH-HHHHH---EEEESCCEEEEGGGSTTHHH---HHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHccCC--EEEEEcCCCccHHHHHH-HHHHh---cccCCCcEEEEecCCCCHHH---HHHHHHHHcCCCCcceE
Confidence 456777777666 33477899999998763 22110 00123577778887644322 22333445688889988
Q ss_pred EEECCCCcee
Q 003115 208 VFLSPDLKPL 217 (846)
Q Consensus 208 v~l~pdg~~~ 217 (846)
+| +|+.|
T Consensus 75 fI---~G~~I 81 (127)
T 3l4n_A 75 LV---NGVSR 81 (127)
T ss_dssp EE---TTEEC
T ss_pred EE---CCEEE
Confidence 65 45555
No 295
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=94.67 E-value=0.21 Score=57.40 Aligned_cols=174 Identities=10% Similarity=-0.002 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC---CCc
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP---GFL 619 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~--~~~dg~~~~~---~~l 619 (846)
=|..++-+|.-||...++......-+ +...+.+|+.|+++++.|.-.|-.| +|-=+. ..+.|.+... ..+
T Consensus 101 TtIR~LGGLLSAy~Ls~~~~~~~~~~----~~~~~~lL~kA~dLadrLlpAFdTp-tgiP~~~vnl~~~~~~~~~~~~~~ 175 (503)
T 1hcu_A 101 TNIRYLGGLLSAYDLLRGPFSSLATN----QTLVNSLLRQAQTLANGLKVAFTTP-SGVPDPTVFFNPTVRRSGASSNNV 175 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGCCC----HHHHHHHHHHHHHHHHHHGGGGCSS-SSCCCSEEECSSSCEECCCSEEEH
T ss_pred eehhhHhHHHHHHHHccCcccccccc----ccchHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCCCCcccc
Confidence 36888999999999998720000000 0001479999999999999888543 442111 1223322111 123
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--ccCCCc---ccccCCCCCcccccccCCCCCCCCChHHHHH
Q 003115 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (846)
Q Consensus 620 eDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~--D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a 694 (846)
-..+-++.=+..|.++|||++|.+.|+++.+.+.+.-. .+..|- +.+... +... ..+..+=++.-..-
T Consensus 176 Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~t--g~~~-----~~~~~~Ga~~DS~Y 248 (503)
T 1hcu_A 176 AEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSN--GTFQ-----DSSGSWSGLMDSFY 248 (503)
T ss_dssp HHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTT--CCBC-----CCEECSSTTTHHHH
T ss_pred ccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCC--Cccc-----CCeeeecCCCccHH
Confidence 33445566788999999999999999999988875321 011221 121111 0100 00111112233577
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 003115 695 INLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 731 (846)
Q Consensus 695 ~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p 731 (846)
+-|++.+.++++. ++.|++.-.+.++.+...+.+.|
T Consensus 249 EYLlK~~il~g~~-~~~y~~m~~~a~~~i~~~l~~~~ 284 (503)
T 1hcu_A 249 EYLIKMYLYDPVA-FAHYKDRWVLGADSTIGHLGSHP 284 (503)
T ss_dssp HHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEECB
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999864 46788888888888877776655
No 296
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=94.61 E-value=0.062 Score=46.38 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=36.0
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.|+++||++|+++.. .+ +..+-.|..+.|| +.|+..+.+. ..++..++|+. |. +|+.+.
T Consensus 8 v~ly~~~~C~~C~~~~~-~L------~~~~i~~~~~di~--~~~~~~~~l~----~~~~~~~vP~l-~~--~g~~i~ 68 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKA-LL------ARKGAEFNEIDAS--ATPELRAEMQ----ERSGRNTFPQI-FI--GSVHVG 68 (92)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCEEEEST--TSHHHHHHHH----HHHTSSCCCEE-EE--TTEEEE
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEEEECC--CCHHHHHHHH----HHhCCCCcCEE-EE--CCEEEc
Confidence 45689999999998764 22 2223346655444 4454433332 23478899964 44 566654
No 297
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=94.46 E-value=1.8 Score=49.38 Aligned_cols=291 Identities=14% Similarity=0.079 Sum_probs=156.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHcc-CC-----------hHHHHHHHHHHHHHHHhccCCCCceeeeccCCCcccccc
Q 003115 370 WHVPHFEKMLYDQGQLANVYLDAFSLT-KD-----------VFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGA 437 (846)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t-~~-----------~~y~~~A~~t~~fl~r~m~~~~Ggfysa~DADs~~~~~~ 437 (846)
-.|+-||- |-++|.-+.-||.++ ++ +.|++.|.+..+-|+--+-.|.|-=|..++-...+
T Consensus 81 ~~vsvFET----tIR~LGGLLSAy~Ls~g~~~~~~~~~~~~~~lL~kA~dLadrLlpAF~TptgiP~~~vnl~~~~---- 152 (475)
T 2ri9_A 81 DTVSLFET----TIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHG---- 152 (475)
T ss_dssp SCEEHHHH----HHHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCC----
T ss_pred Cccchhhe----ehHhHhHHhHHHHhccCccccccccccchHHHHHHHHHHHHHHHHhhcCCCCCCCceeecccCC----
Confidence 34666775 556888888888888 66 79999999999999988877777555544422210
Q ss_pred ccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHH
Q 003115 438 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 517 (846)
Q Consensus 438 ~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~ 517 (846)
....+. + ..+|+-.+ ..+ |. .+++..| .++..+.
T Consensus 153 -~~~~~~--~-~~Ae~gsl---~LE-F~------------------------------------~LS~lTG--d~~Y~~~ 186 (475)
T 2ri9_A 153 -NDGATT--N-GLAVTGTL---VLE-WT------------------------------------RLSDLTG--DEEYAKL 186 (475)
T ss_dssp -BCCCSE--E-EHHHHHSC---HHH-HH------------------------------------HHHHHHS--CTHHHHH
T ss_pred -CcCCCc--c-chhccccc---eee-HH------------------------------------HHHHHhC--CHHHHHH
Confidence 000000 0 01111000 000 00 1122222 1234455
Q ss_pred HHHHHHHHHhhh--cCCCCC-----CCCch------hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 003115 518 LGECRRKLFDVR--SKRPRP-----HLDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEY 581 (846)
Q Consensus 518 l~~~r~~L~~~R--~~R~~P-----~~DdK------ilt~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~y 581 (846)
.+.+.+.|.+.| .....| ++|-. -..+|.|..-+ =|.+.+..+|+. .+.|
T Consensus 187 a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~--------------~~~~ 252 (475)
T 2ri9_A 187 SQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKR--------------FETY 252 (475)
T ss_dssp HHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHHHHHHCTTT--------------THHH
T ss_pred HHHHHHHHHhhccccccCCCCCcceEEeCCCCcccCCceeecCCcchHHHHHHHHHHHcCCc--------------hHHH
Confidence 667777777655 211111 11111 12345555544 578888888762 2578
Q ss_pred HHHHHHHHHHHHHhccccC---CCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHc
Q 003115 582 MEVAESAASFIRRHLYDEQ---THR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYE-FGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 582 Le~A~~~a~~l~~~l~d~~---~G~-l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe-~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
+++=.++.+-+.+|+.... .+. +...+.++.. . ...+--+.++-|++.|.- +...+++++.|.+|.+.+...+
T Consensus 253 ~~m~~~a~~~i~~~l~~~~~~~~~~~~v~~~~~~~~-~-~~~~hL~cF~~G~~aLgg~~~~~~~~~~~a~~l~~tC~~~y 330 (475)
T 2ri9_A 253 KDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNY-D-LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATY 330 (475)
T ss_dssp HHHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEE-E-CEEETGGGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEeccCCcc-c-cccchHHHhHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 8888888888988875421 122 2222322211 1 112222334555555554 4467899999999999988766
Q ss_pred cccCCCc----ccccCCCCCc----cccc-ccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 657 LDREGGG----YFNTTGEDPS----VLLR-VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 657 ~D~~~Gg----yf~t~~~~~~----l~~R-~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
....+|- |.......+. ...+ .....+...| ---..++.+.-|+++||+ +.|++.+.++++++....
T Consensus 331 ~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~-LRPE~iES~fylyR~TgD---~~yr~~gw~~f~ai~k~~ 406 (475)
T 2ri9_A 331 NSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYV-LRPEVIESFYYAHRVTGK---EIYRDWVWNAFVAINSTC 406 (475)
T ss_dssp HTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBC-SCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHT
T ss_pred HhcccCCCCcEEEeecCcccccccccccCCCceecccccC-CChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHH
Confidence 4433441 2222111100 0000 0000000000 001578999999999996 899999999999986654
Q ss_pred HhhhhhHH
Q 003115 728 KDMAMAVP 735 (846)
Q Consensus 728 ~~~p~~~~ 735 (846)
+.+.|++
T Consensus 407 -rt~~G~a 413 (475)
T 2ri9_A 407 -RTDSGFA 413 (475)
T ss_dssp -BCSSSBC
T ss_pred -ccccCCc
Confidence 4445543
No 298
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=94.14 E-value=0.066 Score=61.94 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=66.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCC-CCCcccccccCCCCCCCCChHHHHHHHH
Q 003115 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (846)
-|-..=.+-|||.+|.++||+.+|++|++|.+.+..-| |..+|--|..-+ .... . .........+.+.-+.+..-+
T Consensus 168 FETtIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAF-dTptgiP~~~vnl~~g~-~-~~~~~~~~s~lAe~GSl~LEF 244 (538)
T 1x9d_A 168 FESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAF-RTPSKIPYSDVNIGTGV-A-HPPRWTSDSTVAEVTSIQLEF 244 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSTTSCCCSEEETTTCC-E-ECCTTCSEEEHHHHHSSHHHH
T ss_pred hheehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeeecccc-c-CCCCcCCCceeccccceeeeH
Confidence 34556678899999999999999999999999999888 555553221100 0000 0 000000011122223344558
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 698 VRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 698 ~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
.+|+++||+ +.|.+.|+++++.+..
T Consensus 245 ~~LS~LTGd---~~Y~~~a~r~~~~l~~ 269 (538)
T 1x9d_A 245 RELSRLTGD---KKFQEAVEKVTQHIHG 269 (538)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHh
Confidence 899999996 8999999999888754
No 299
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=94.11 E-value=0.17 Score=51.82 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=16.8
Q ss_pred cCCCEEEEEe-ccCChhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCH 154 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~ 154 (846)
.||+|+|.|+ ++||+.|.
T Consensus 32 ~gk~vvl~f~~a~~cp~C~ 50 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCS 50 (241)
T ss_dssp TTSEEEEEEESCSSCHHHH
T ss_pred CCCeEEEEEeCCCCCCCCC
Confidence 5899999998 99999999
No 300
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=93.77 E-value=0.16 Score=52.58 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
..|.++|+||+|++.....|-... | ..+.++|+.|..
T Consensus 126 ~~p~~fiID~~G~I~~~~~~~~~~---g-r~~~eilr~l~~ 162 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILYPATT---G-RNFSEILRVIDS 162 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHHHH
Confidence 469999999999988764432111 1 146677666653
No 301
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=93.51 E-value=0.064 Score=52.28 Aligned_cols=19 Identities=5% Similarity=-0.393 Sum_probs=17.0
Q ss_pred cCCCEEEEEe-ccCChhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHV 155 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~ 155 (846)
.||+|+|.|+ ++||+.|..
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~ 49 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSK 49 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCH
Confidence 5889999986 999999997
No 302
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=93.42 E-value=0.037 Score=55.78 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=35.9
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~ 184 (846)
+|+++|.|++.||+.|+.|+...=-.+++++.+..+.+.+++|++..
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 68999999999999999998632133566666656777788888754
No 303
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=93.30 E-value=0.19 Score=56.30 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC-CCCCcchHHHHHH
Q 003115 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-APGFLDDYAFLIS 627 (846)
Q Consensus 549 mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~-~~~~leDyA~~i~ 627 (846)
.+.++++|+++.+| ++..+.+..++.-+--.=+++..| ..+. ......+-.+++.
T Consensus 378 yll~~vra~~~s~D----------------~~Lw~~~~~ma~~~~lgdi~~~~~--------~~~~~~~~~~~~sp~lL~ 433 (543)
T 2v8i_A 378 FLISYARAYAIDND----------------PLLWKVARGIANDQGLGDIGTAPG--------KEVKVNMDTTNSDPYALF 433 (543)
T ss_dssp HHHHHHHHHHHSCC----------------HHHHHHHHHHHHHTTCEECTTBTT--------BSCEECTTCCCCCHHHHH
T ss_pred hhHHHHHHHHcCCC----------------HHHHHHHHHHHhhCCccccCCCcC--------cccccccCCCCcCHHHHH
Confidence 47799999999988 677777777664432111221111 1111 1233345578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccccc
Q 003115 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 667 (846)
Q Consensus 628 aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (846)
|+|+||++|+++.|++.|..+.+.+.+.-++ + |||-.
T Consensus 434 allEL~~atq~~~~l~lA~~~g~nl~~~~~~--~-G~Fv~ 470 (543)
T 2v8i_A 434 ALLDLYHASQVADYRKLAEKIGDNIIKIRYI--D-GFFMA 470 (543)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--T-TEECS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc--C-ceecC
Confidence 9999999999999999999999988865443 3 45543
No 304
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=92.86 E-value=0.097 Score=50.28 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=16.7
Q ss_pred cCCCEEEEEe-ccCChhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCH 154 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~ 154 (846)
.||+|+|.|+ ++||+.|.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TTSEEEEEEESCTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCCCC
Confidence 5899999999 89999999
No 305
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=92.70 E-value=5.3 Score=44.94 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=67.0
Q ss_pred cCCCC---CCCCCCCChhHHH--HHHHhhhhcccc-CCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEc-CC---
Q 003115 299 RFGGF---GSAPKFPRPVEIQ--MMLYHSKKLEDT-GKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-DE--- 368 (846)
Q Consensus 299 ~~GGf---g~apKFP~~~~l~--~ll~~~~~~~~~-~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsv-D~--- 368 (846)
..||+ |.--||-.|+... .|+..+...++. .....-+++++.+.--+|=|.+ .++. .|+||. .| |.
T Consensus 48 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk--~~~~-~g~~y~-qVgd~~~D 123 (433)
T 1ks8_A 48 LTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIK--AHTS-QNEFYG-QVGQGDAD 123 (433)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH--HCCB-TTBEEE-EESCHHHH
T ss_pred CCCceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhcCCchHHHHHHHHHHHHHHHH--hccC-CCcEEE-EeCCCCcC
Confidence 47888 6667887765432 221111110000 0011246778877777776665 3444 366764 44 32
Q ss_pred --CCCCCCCc-------------hhHHHHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 003115 369 --RWHVPHFE-------------KMLYDQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 415 (846)
Q Consensus 369 --~W~vPHFE-------------KMLyDNA~Ll~~ya~Ay~~t~~--~----~y~~~A~~t~~fl~r~ 415 (846)
-|..|.-. ..--..+..+.+++.|++++++ + .+++.|++..+|..++
T Consensus 124 h~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 191 (433)
T 1ks8_A 124 HAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNY 191 (433)
T ss_dssp HTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHC
Confidence 56666422 1123478999999999999974 4 4577889999998874
No 306
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=92.19 E-value=4.4 Score=48.70 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhccCCCCceee
Q 003115 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~~~~y~~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
||| .|+.... .---.-+.|..+.++..+.... +++.+.+.++++++||++ ++.++|||.+
T Consensus 440 GGW-~f~~~~~-----~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls-~Q~~DGgw~a 502 (732)
T 1w6k_A 440 GGF-SFSTLDC-----GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLN-MRNPDGGFAT 502 (732)
T ss_dssp TCC-BSSCTTT-----CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHT-TCCTTSCBCS
T ss_pred Cee-cCCCCCC-----CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH-hcCCCCCEEe
Confidence 777 3555432 2224557899999999988764 456778899999999997 8899999953
No 307
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=92.18 E-value=0.72 Score=47.09 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
..|.++|+||+|++.....|-... |+ .+.++|+.|..
T Consensus 130 ~~p~~fiID~~G~I~~~~~~~~~~---gr-~~~eil~~i~~ 166 (224)
T 1prx_A 130 TARVVFVFGPDKKLKLSILYPATT---GR-NFDEILRVVIS 166 (224)
T ss_dssp TCCEEEEECTTSBEEEEEECCTTB---CC-CHHHHHHHHHH
T ss_pred cceEEEEECCCCEEEEEEecCCCC---CC-CHHHHHHHHHH
Confidence 379999999999998764431111 12 46677766653
No 308
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=92.15 E-value=0.25 Score=46.80 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.+.++.+.+.++ |.|+..+ +||++|+...+ .|.. ++-.|..|.|+ +.|++.+.+ ..++|...
T Consensus 25 ~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~ak~-~L~~------~gv~y~~vdI~--~d~~~~~~L----~~~~G~~t 90 (135)
T 2wci_A 25 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQ-ALAA------CGERFAYVDIL--QNPDIRAEL----PKYANWPT 90 (135)
T ss_dssp HHHHHHHHHHCS-EEEEESBCSSSBSSHHHHHHHH-HHHT------TCSCCEEEEGG--GCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHhccCC-EEEEEEecCCCCCCccHHHHHH-HHHH------cCCceEEEECC--CCHHHHHHH----HHHHCCCC
Confidence 555666666665 6664444 89999998764 3322 22246655444 445544333 33457778
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|..+ + +|+.+.
T Consensus 91 vP~Vf-I--~G~~iG 102 (135)
T 2wci_A 91 FPQLW-V--DGELVG 102 (135)
T ss_dssp SCEEE-E--TTEEEE
T ss_pred cCEEE-E--CCEEEE
Confidence 89754 4 455553
No 309
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=92.15 E-value=0.15 Score=50.74 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=14.7
Q ss_pred cCCCEEEE-EeccCChhhhh
Q 003115 137 RDVPIFLS-IGYSTCHWCHV 155 (846)
Q Consensus 137 e~KpI~l~-~g~~wC~wC~~ 155 (846)
.||+|+|. |.++||+.|..
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~ 74 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSL 74 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCCEEEEEEcCCCCCCcCH
Confidence 47766555 56999999998
No 310
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=91.97 E-value=0.26 Score=47.32 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHhcCCCEEEEEeccCChhhhhhhhcc
Q 003115 134 ARKRDVPIFLSIGYSTCHWCHVMEVES 160 (846)
Q Consensus 134 Ak~e~KpI~l~~g~~wC~wC~~me~et 160 (846)
.+..+|.+++.|+-.+|++|++++.+.
T Consensus 10 ~~~~a~~~vv~f~D~~Cp~C~~~~~~l 36 (147)
T 3gv1_A 10 VRGNGKLKVAVFSDPDCPFCKRLEHEF 36 (147)
T ss_dssp EETTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred ecCCCCEEEEEEECCCChhHHHHHHHH
Confidence 345678899999999999999998753
No 311
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=91.76 E-value=0.59 Score=42.48 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCEEEEE-e---ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~-g---~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.+.++..-++++ |.|+. | ++||++|+...+ .|. ..+-.|..+.|+ +.|++.+.+ ..++|...
T Consensus 6 ~~~v~~~i~~~~-Vvlf~kg~~~~~~Cp~C~~ak~-~L~------~~gi~y~~~di~--~d~~~~~~l----~~~~g~~t 71 (111)
T 3zyw_A 6 NLRLKKLTHAAP-CMLFMKGTPQEPRCGFSKQMVE-ILH------KHNIQFSSFDIF--SDEEVRQGL----KAYSSWPT 71 (111)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCEEEEGG--GCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHHhcCC-EEEEEecCCCCCcchhHHHHHH-HHH------HcCCCeEEEECc--CCHHHHHHH----HHHHCCCC
Confidence 556667666665 44433 2 299999999764 332 223346655444 445543333 33457778
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|..++ +|+.+.
T Consensus 72 vP~ifi---~g~~iG 83 (111)
T 3zyw_A 72 YPQLYV---SGELIG 83 (111)
T ss_dssp SCEEEE---TTEEEE
T ss_pred CCEEEE---CCEEEe
Confidence 898754 556554
No 312
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=91.57 E-value=0.11 Score=49.80 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred cCCCEEEEEe-ccCChhhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHVM 156 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~m 156 (846)
.||+++|.|+ ++||+.|...
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e 62 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATS 62 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHH
T ss_pred CCCeEEEEEECCCCCCccHHH
Confidence 4899999998 8999999763
No 313
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=91.57 E-value=0.26 Score=50.30 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHH
Q 003115 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (846)
+|.++|+||+|++.....|-.+. | ..+.++|+.|..
T Consensus 128 ~p~~flID~~G~I~~~~~~~~~~---g-~~~~ell~~i~~ 163 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLYPATT---G-RNAHEILRVLKS 163 (220)
T ss_dssp CEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHHHH
Confidence 79999999999998764431111 1 256676666653
No 314
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=91.55 E-value=0.45 Score=45.88 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.5
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVES 160 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~et 160 (846)
..+|..++.|...+|+||+.++...
T Consensus 25 ~~a~v~i~~f~D~~Cp~C~~~~~~~ 49 (175)
T 1z6m_A 25 SNAPVKMIEFINVRCPYCRKWFEES 49 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCCcchHHHHHHH
Confidence 3456678889999999999999754
No 315
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=91.38 E-value=0.66 Score=41.82 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.+.++++-++++ |.|+.-. +||++|++..+ .| +..+-.|..+.|+ +.|++.+.+ ..++|...
T Consensus 8 ~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~ak~-~L------~~~gi~~~~~dI~--~~~~~~~~l----~~~~g~~t 73 (109)
T 3ipz_A 8 KDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNTVVQ-IL------KNLNVPFEDVNIL--ENEMLRQGL----KEYSNWPT 73 (109)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-HH------HHTTCCCEEEEGG--GCHHHHHHH----HHHHTCSS
T ss_pred HHHHHHHHccCC-EEEEEecCCCCCCChhHHHHHH-HH------HHcCCCcEEEECC--CCHHHHHHH----HHHHCCCC
Confidence 455666666665 5554433 59999999764 22 2233356665554 445543333 33457888
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|.. |+ +|+.|.
T Consensus 74 vP~i-fi--~g~~iG 85 (109)
T 3ipz_A 74 FPQL-YI--GGEFFG 85 (109)
T ss_dssp SCEE-EE--TTEEEE
T ss_pred CCeE-EE--CCEEEe
Confidence 9965 44 455554
No 316
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=90.99 E-value=0.24 Score=48.65 Aligned_cols=19 Identities=11% Similarity=-0.200 Sum_probs=15.2
Q ss_pred cCCCEEEEEe-ccCChhhhh
Q 003115 137 RDVPIFLSIG-YSTCHWCHV 155 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~ 155 (846)
.||+|+|.|+ ++||+.|..
T Consensus 42 ~gk~vvL~f~pa~wcp~C~~ 61 (173)
T 3mng_A 42 KGKKGVLFGVPGAFTPGCSK 61 (173)
T ss_dssp TTSEEEEEECSCTTCHHHHH
T ss_pred CCCcEEEEEEeCCCCCCCCH
Confidence 4787777665 999999994
No 317
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.6 Score=43.15 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhcC---eEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003115 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYG 200 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~~---FV~vkvD~ee~p~~~~~y~~~~~~~~g 200 (846)
.+.++.+-++++ |.|+.-. +||++|+...+ .|+ .++-. |. .+|+++.+++.+.+ ..++|
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~------~~gv~~~~~~--~~dv~~~~~~~~~l----~~~sg 71 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCGFSRATIG-LLG------NQGVDPAKFA--AYNVLEDPELREGI----KEFSE 71 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHH-HHH------HHTBCGGGEE--EEECTTCHHHHHHH----HHHHT
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCccHHHHHH-HHH------HcCCCcceEE--EEEecCCHHHHHHH----HHHhC
Confidence 345666667666 4444333 59999999763 222 22222 44 45555556554333 34457
Q ss_pred CCCCCcEEEECCCCceec
Q 003115 201 GGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 201 ~~G~P~~v~l~pdg~~~~ 218 (846)
...+|..+| +|+.|.
T Consensus 72 ~~tvP~vfI---~g~~iG 86 (121)
T 3gx8_A 72 WPTIPQLYV---NKEFIG 86 (121)
T ss_dssp CCSSCEEEE---TTEEEE
T ss_pred CCCCCeEEE---CCEEEe
Confidence 778888754 455554
No 318
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=90.31 E-value=3.4 Score=44.94 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHH
Q 003115 511 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL-VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAA 589 (846)
Q Consensus 511 ~~~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNgl-mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a 589 (846)
++++.+.-+..+++.+....+-+.+.-.+-.++.-.|+ |+-|+.. +| + +.=.++.
T Consensus 16 ~~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGqgYGMl~Av~~-----~d----------------~---~~FD~l~ 71 (334)
T 1wzz_A 16 PDAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQGYGMLFAASA-----GD----------------L---ASFQSMW 71 (334)
T ss_dssp TTHHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHHHHHHHHHHHH-----TC----------------H---HHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHHHHHHHHHHHh-----CC----------------H---HHHHHHH
Confidence 35666677777877776533222233222225666664 3333322 23 1 1224677
Q ss_pred HHHHHhccccCCCeEEEEecC-CCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCccc
Q 003115 590 SFIRRHLYDEQTHRLQHSFRN-GPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 665 (846)
Q Consensus 590 ~~l~~~l~d~~~G~l~~~~~d-g~~---~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (846)
.|.++++...++|.+-|.+.. +.. ....=.++=-+.+.||+.+.+..|+..|++.|.+|++.+.++=....+|...
T Consensus 72 ~wt~~~l~~~~~~L~aW~~~~~~~~~v~d~n~AtDgDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~i~~~~v~~~~g~~~ 151 (334)
T 1wzz_A 72 MWARTNLQHTNDKLFSWRFLKGHQPPVPDKNNATDGDLLIALALGRAGKRFQRPDYIQDAMAIYGDVLNLMTMKAGPYVV 151 (334)
T ss_dssp HHHHHHTBCSSSSCBCSEEETTSSSSSCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHEEEETTEEE
T ss_pred HHHHHHhccCCCCceEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 888888865556777776643 221 2233455567899999999999999999999999999888875544334322
Q ss_pred ccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 666 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 666 ~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
..+....- .+...+..-||= .+...+-.++.++++ ..|.+.++..++.+..
T Consensus 152 llPg~~gf----~~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~ll~~ 202 (334)
T 1wzz_A 152 LMPGAVGF----TKKDSVILNLSY--YVMPSLLQAFDLTAD---PRWRQVMEDGIRLVSA 202 (334)
T ss_dssp ECSCSSSC----BCSSEEEECGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred ECCCcccc----cCCCCCeechhh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHH
Confidence 22221100 000001111221 233566677888775 5688888877666543
No 319
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=89.91 E-value=4.1 Score=44.88 Aligned_cols=69 Identities=12% Similarity=-0.009 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 003115 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (846)
Q Consensus 549 mI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~a 628 (846)
++.++..++++++| ++|++.|+++.+.+.+.- + + .....+..+.|=.+..
T Consensus 284 i~~~l~~~~~~~~d----------------~~~~~~a~~~~~~~~~~~-----~-~--------~~~~~LCHG~aG~~~~ 333 (409)
T 2g0d_A 284 ISLLYLYGGLALDN----------------DYFVDKAEKILESAMQRK-----L-G--------IDSYMICHGYSGLIEI 333 (409)
T ss_dssp HHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHC-----T-T--------CCSCCTTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhc-----c-C--------CCCCCCCChHHHHHHH
Confidence 45677889999988 789999999999888651 0 0 1224566678888999
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 003115 629 LLDLYEFGSGTKWLVWAIE 647 (846)
Q Consensus 629 Ll~LYe~Tgd~~yL~~A~~ 647 (846)
++.+|+.|++++|++.|.+
T Consensus 334 l~~l~~~~~~~~~~~~a~~ 352 (409)
T 2g0d_A 334 CSLFKRLLNTKKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999887
No 320
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=89.87 E-value=0.51 Score=48.38 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=56.1
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC---------------------Ccc---HHHHH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE---------------------RPD---VDKVY 191 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee---------------------~p~---~~~~y 191 (846)
.||+|+|.|+ ++||+.|.. |-..|++. ..++-+.+.+.|-|..+. -|- .+...
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~~-~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPT-EIIAFSEA-AKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHH-HHHHHHHH-HHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCch-hhhHHHHh-HHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 4899999999 999999986 44455442 223333345555444321 010 01111
Q ss_pred HHHHHHhcCCC--CCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003115 192 MTYVQALYGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 192 ~~~~~~~~g~~--G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
.+....+.... ..+.++|+||+|++.+...|-.+.+ .++-++|+.|..+
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~g----rn~dEiLr~l~Al 179 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVG----RNVDEALRLVEAF 179 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCC----CCHHHHHHHHHHh
Confidence 11111111112 2478999999998877654433332 2688888777633
No 321
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=89.85 E-value=0.58 Score=43.20 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCCEEEEEec----cCChhhhhhhhcccCCHHHHHHHhc-CeEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~----~wC~wC~~me~etf~d~eVa~~ln~-~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~ 202 (846)
.+.+++.-++++ |.|+.-. +||++|+...+ .|+ .++- .|..+.| ++.|++.+.+ ..++|..
T Consensus 10 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~------~~gv~~~~~vdV--~~d~~~~~~l----~~~tg~~ 75 (118)
T 2wem_A 10 AEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAVVQ-ILR------LHGVRDYAAYNV--LDDPELRQGI----KDYSNWP 75 (118)
T ss_dssp HHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCCEEEES--SSCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEecCCCCCccHHHHHHHH-HHH------HcCCCCCEEEEc--CCCHHHHHHH----HHHhCCC
Confidence 456667777776 5543332 49999998763 222 2222 3555544 4555544333 3445778
Q ss_pred CCCcEEEECCCCceec
Q 003115 203 GWPLSVFLSPDLKPLM 218 (846)
Q Consensus 203 G~P~~v~l~pdg~~~~ 218 (846)
.+|..+| +|+.|.
T Consensus 76 tvP~vfI---~g~~IG 88 (118)
T 2wem_A 76 TIPQVYL---NGEFVG 88 (118)
T ss_dssp SSCEEEE---TTEEEE
T ss_pred CcCeEEE---CCEEEe
Confidence 8898754 455554
No 322
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=89.69 E-value=0.72 Score=39.41 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=36.7
Q ss_pred EEEecc----CChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC---CCccHHHHHHHHHHHhcCCC-----CCCcEEEE
Q 003115 143 LSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE---ERPDVDKVYMTYVQALYGGG-----GWPLSVFL 210 (846)
Q Consensus 143 l~~g~~----wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e---e~p~~~~~y~~~~~~~~g~~-----G~P~~v~l 210 (846)
+-|+.+ ||++|+...+ .| +..+-.|..+.||.. +.|+..+.+ ...+|.. .+|..++
T Consensus 3 ~iY~~~~~~~~Cp~C~~ak~-~L------~~~gi~y~~idI~~~~~~~~~~~~~~l----~~~~g~~~~~~~tvP~v~i- 70 (87)
T 1aba_A 3 KVYGYDSNIHKCGPCDNAKR-LL------TVKKQPFEFINIMPEKGVFDDEKIAEL----LTKLGRDTQIGLTMPQVFA- 70 (87)
T ss_dssp EEEECCTTTSCCHHHHHHHH-HH------HHTTCCEEEEESCSBTTBCCHHHHHHH----HHHHTCSCCTTCCSCEEEC-
T ss_pred EEEEeCCCCCcCccHHHHHH-HH------HHcCCCEEEEEeeccccccCHHHHHHH----HHHhCCCCCCCCccCEEEE-
Confidence 346889 9999998663 22 223334666555532 344443333 3334766 7897654
Q ss_pred CCCCceecc
Q 003115 211 SPDLKPLMG 219 (846)
Q Consensus 211 ~pdg~~~~~ 219 (846)
++|+.+.|
T Consensus 71 -~~g~~igG 78 (87)
T 1aba_A 71 -PDGSHIGG 78 (87)
T ss_dssp -TTSCEEES
T ss_pred -ECCEEEeC
Confidence 67777643
No 323
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=89.43 E-value=0.74 Score=54.24 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC----CC--CCCCCcc
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG----PS--KAPGFLD 620 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg----~~--~~~~~le 620 (846)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+.....+. .. ...++.
T Consensus 291 ~~~AAalAaas~vfk~~--d~~y--------a~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~~~~~Y~ss~~~- 354 (609)
T 1ut9_A 291 LNFAATLAQSARLWKDY--DPTF--------AADCLEKAEIAWQAALKHP-----DIYAEYTPGSGGPGGGPYNDDYVG- 354 (609)
T ss_dssp HHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCT-----TCCBCCCCSSSSCBSCCCCBSCCH-
T ss_pred HHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCc-----ccccccccccCccCCCCCCCCCcc-
Confidence 55678899999999762 1222 2678999999999998753 1110000000 00 112223
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003115 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (846)
Q Consensus 621 DyA~~i~aLl~LYe~Tgd~~yL~~A~~L~ 649 (846)
-.+++|.+.||.+|||..||+.|++..
T Consensus 355 --DEl~WAAawLy~ATgd~~Yl~~a~~~~ 381 (609)
T 1ut9_A 355 --DEFYWAACELYVTTGKDEYKNYLMNSP 381 (609)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHHTST
T ss_pred --cHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence 345889999999999999999998643
No 324
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=87.96 E-value=1.1 Score=45.54 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred hHHHHHHHHhc--CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003115 127 GEEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (846)
Q Consensus 127 ~~eAl~~Ak~e--~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~ 204 (846)
.++.++..+.. ....++-|+++||++|++..+ .+ +..+-.|..+.|+. .+... .+...+|..+.
T Consensus 155 ~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~~-~L------~~~~i~~~~~~i~~--~~~~~-----~l~~~~g~~~v 220 (241)
T 1nm3_A 155 ADTMLKYLAPQHQVQESISIFTKPGCPFCAKAKQ-LL------HDKGLSFEEIILGH--DATIV-----SVRAVSGRTTV 220 (241)
T ss_dssp HHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHHH-HH------HHHTCCCEEEETTT--TCCHH-----HHHHHTCCSSS
T ss_pred HHHHHHHhhhhccccceEEEEECCCChHHHHHHH-HH------HHcCCceEEEECCC--chHHH-----HHHHHhCCCCc
Confidence 46666665543 223344578899999998753 22 22333566655554 34421 12234578899
Q ss_pred CcEEEECCCCceecc
Q 003115 205 PLSVFLSPDLKPLMG 219 (846)
Q Consensus 205 P~~v~l~pdg~~~~~ 219 (846)
|..++ +|+.+.+
T Consensus 221 P~~~~---~g~~i~g 232 (241)
T 1nm3_A 221 PQVFI---GGKHIGG 232 (241)
T ss_dssp CEEEE---TTEEEES
T ss_pred CEEEE---CCEEEEC
Confidence 98754 5666653
No 325
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=87.77 E-value=0.69 Score=40.18 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=32.3
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhc---CeEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCcee
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPL 217 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~---~FV~vkvD~ee~p~~~~~y~~~~~~~~g--~~G~P~~v~l~pdg~~~ 217 (846)
-|+.++|++|+..++ -..+.++|++ .|.. +|.++.|+..+. +...+| ...+|..++ +|+.+
T Consensus 6 ly~~~~C~~c~~~~~----~~~ak~~L~~~~i~~~~--~di~~~~~~~~~----l~~~~g~~~~~vP~ifi---~g~~i 71 (93)
T 1t1v_A 6 VYSTSVTGSREIKSQ----QSEVTRILDGKRIQYQL--VDISQDNALRDE----MRTLAGNPKATPPQIVN---GNHYC 71 (93)
T ss_dssp EEECSSCSCHHHHHH----HHHHHHHHHHTTCCCEE--EETTSCHHHHHH----HHHHTTCTTCCSCEEEE---TTEEE
T ss_pred EEEcCCCCCchhhHH----HHHHHHHHHHCCCceEE--EECCCCHHHHHH----HHHHhCCCCCCCCEEEE---CCEEE
Confidence 368999999953332 1223345544 3544 555555544332 233346 557887643 45544
No 326
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=86.84 E-value=0.22 Score=49.35 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcC--eEEEEEcC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW--FVSIKVDR 181 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~--FV~vkvD~ 181 (846)
++|++|.|+..||+.|+.|+...-..+++.+.+..+ |+.+.++.
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 59 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL 59 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence 479999999999999999997430236676655543 55554444
No 327
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=86.81 E-value=0.82 Score=44.38 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.5
Q ss_pred cCC-CEEEEEeccCChhhhh
Q 003115 137 RDV-PIFLSIGYSTCHWCHV 155 (846)
Q Consensus 137 e~K-pI~l~~g~~wC~wC~~ 155 (846)
.|| .|++.|.++||+.|..
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~ 61 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSS 61 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHH
T ss_pred CCCCEEEEEecCCCCCCCCH
Confidence 355 6677889999999987
No 328
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=86.59 E-value=1.1 Score=46.07 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=54.3
Q ss_pred cCCCEEEEEe-ccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCC---------------------c---cHHHHH
Q 003115 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER---------------------P---DVDKVY 191 (846)
Q Consensus 137 e~KpI~l~~g-~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~---------------------p---~~~~~y 191 (846)
.||+|+|.|+ .+||+.|.. |-..|++-- .++-+.+.+.|=|..+.. | |.+...
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~~~-~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v 132 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPT-EVIAFSDSV-SRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI 132 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCH-HHHHHHTTH-HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCEEEEEEecccCCCCCch-hHhhHHHHH-hhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence 5899999999 999999988 444555432 233333555544443310 1 001111
Q ss_pred HHHHHHhcCCCCC--CcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHH
Q 003115 192 MTYVQALYGGGGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 192 ~~~~~~~~g~~G~--P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
.+....+....|. -.++|+||+|++.+...|-.+.+ ..+-++|+.|..+
T Consensus 133 a~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~g----r~~~EvLr~l~aL 183 (219)
T 3tue_A 133 ARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVG----RSVEEVLRLLEAF 183 (219)
T ss_dssp HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCC----CCHHHHHHHHHHH
T ss_pred HHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCC----CCHHHHHHHHHHh
Confidence 1111111111233 36788888888776544433322 2677777766544
No 329
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=86.56 E-value=8.6 Score=44.48 Aligned_cols=160 Identities=10% Similarity=-0.026 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC--hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-------CCC
Q 003115 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSD--RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-------PSK 614 (846)
Q Consensus 544 ~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~--~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg-------~~~ 614 (846)
--.+..++-|+-++..+++.- ...++-|-.+-. .+..|+.++-.++||++.. +++.|.++|...+. .|.
T Consensus 152 ~p~a~t~~~L~~a~~~~~~~~-~~~~~i~es~~~~~~~d~ldeikwg~D~llk~~-~~~~g~~y~~v~~~~w~g~~~~Pe 229 (537)
T 3gzk_A 152 VPAAKAVADLLLAHEYFPAAL-AHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQ-DPATGGVYHKVTTPSFPPLDTRPE 229 (537)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-HTCCCSGGGSCSSCCCHHHHHHHHHHHHHHHTB-CTTTCCBBSEEECSSCCCTTCCGG
T ss_pred ccHHHHHHHHHHHHHHhhhhh-hhhhccccccCcccHHHHHHHHHHHHHHHHhcc-cCCCCeEEEEecCCCcCCCCcCcc
Confidence 344566666777776654311 001111111112 3689999999999999754 44457788864331 110
Q ss_pred ---CC-----CCcchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccC
Q 003115 615 ---AP-----GFLDDYAFLISGLLDLYEFGSG------TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 680 (846)
Q Consensus 615 ---~~-----~~leDyA~~i~aLl~LYe~Tgd------~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~ 680 (846)
.. .....-+.++.+|...+.+.++ .++|+.|+++++.+.++- +.+|..+.+. ...
T Consensus 230 ~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~yA~~~L~~A~~~~~fa~~~~-----~~~~~~~~~~------~~~ 298 (537)
T 3gzk_A 230 DDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPALSSCCADAARRAYAWLGAHE-----MQPFHNPDGI------LTG 298 (537)
T ss_dssp GCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC-----CCCCCCCTTC------CSC
T ss_pred cCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcc-----cccccCCccc------ccC
Confidence 00 1112346788888888988887 789999999998887542 2233221110 001
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 681 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 681 ~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
.+.. ..-.-.++++.+.|++.|++ ..|++.+++...
T Consensus 299 ~Y~~--~~~~Del~wAA~~Ly~aTgd---~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 299 EYGD--AELRDELLWASCALLRMTGD---SAWARVCEPLLD 334 (537)
T ss_dssp CCCC--SCCHHHHHHHHHHHHHHHCC---GGGHHHHHHHHH
T ss_pred CcCC--CccchHHHHHHHHHHHHhCC---HHHHHHHHHhhh
Confidence 1111 11233588889999999996 789999886543
No 330
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=85.12 E-value=21 Score=42.23 Aligned_cols=163 Identities=11% Similarity=0.031 Sum_probs=91.4
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC-CeEEEEecCCCCCCCCCc-
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT-HRLQHSFRNGPSKAPGFL- 619 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~-G~l~~~~~dg~~~~~~~l- 619 (846)
.+...+..++.|+.++.-+++.-....+|-|-.+-..+..|+.++-.++||++.. +++. |.++|...++.-.....+
T Consensus 195 f~~p~a~t~~~L~w~~~~~~~~~~~~~~~ipes~~~~~d~ldeikwg~Dyllk~q-~~~~~g~~y~~vgd~~~~~~~~Pe 273 (639)
T 1clc_A 195 YVVNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKYEIDWILTMQ-YPDGSGRVAHKVSTRNFGGFIMPE 273 (639)
T ss_dssp EHHHHHHHHHHHHHHHHHSHHHHTTCCCSSGGGGSSSCHHHHHHHHHHHHHHTTB-CTTSSCCBEEEEECSSCCCSCCGG
T ss_pred eCccHHHHHHHHHHHHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCCCCCCCch
Confidence 3344677788888888776652110011222112223789999999999999754 4455 889998644311100111
Q ss_pred -------------chHHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccC
Q 003115 620 -------------DDYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 680 (846)
Q Consensus 620 -------------eDyA~~i~aLl~LYe~Tg--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~ 680 (846)
+--+.++.+|...+.+.. |+ ++|+.|+++++.+.++ .|.+|..+.... ..
T Consensus 274 ~~~~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~-----~~~~y~~~~~~~------~g 342 (639)
T 1clc_A 274 NEHDERFFVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNN-----PANVFANQSGFS------TG 342 (639)
T ss_dssp GCCSCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC-----CSCCCCCCTTCC------SC
T ss_pred hcCCCceEecCCcHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCCcccc------cc
Confidence 122445556666666654 44 5677888888777653 233333211000 00
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 681 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 681 ~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
.|.. -+-.-.++++-..|++.||+ ..|++.++....
T Consensus 343 ~Y~s--s~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~~~ 378 (639)
T 1clc_A 343 EYAT--VSDADDRLWAAAEMWETLGD---EEYLRDFENRAA 378 (639)
T ss_dssp CCCC--SCSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred ccCC--CCcchHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1100 01224577888889999986 889999886543
No 331
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.83 E-value=1.2 Score=40.32 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=25.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHH
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVY 191 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y 191 (846)
+-|+.++|++|+..++ -.++.++|+++ .-...+|+++.|+..+.+
T Consensus 11 ~vy~~~~C~~C~~~~~----~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l 56 (111)
T 2ct6_A 11 RVFIASSSGFVAIKKK----QQDVVRFLEANKIEFEEVDITMSEEQRQWM 56 (111)
T ss_dssp EEEECSSCSCHHHHHH----HHHHHHHHHHTTCCEEEEETTTCHHHHHHH
T ss_pred EEEEcCCCCCcccchh----HHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 3468899999995332 11334455542 223346666666554433
No 332
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=83.37 E-value=10 Score=44.53 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccc------CCCcEEEEEcCCCCC----CCCCch--------hHHHHHHHHHHHHHHHHcc
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDH------VGGGFHRYSVDERWH----VPHFEK--------MLYDQGQLANVYLDAFSLT 396 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~------vgGGF~RYsvD~~W~----vPHFEK--------MLyDNA~Ll~~ya~Ay~~t 396 (846)
+++++.+.--+|=|.+ .++. +.|+.+--.+|..|. .|.-.. .----+.++.+++.|++++
T Consensus 227 ~d~ldeikwg~D~llk--~q~~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~vf 304 (609)
T 1ut9_A 227 PDILDEARWEIEFFKK--MQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARLW 304 (609)
T ss_dssp CHHHHHHHHHHHHHHH--HBCCTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hccCCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHhc
Confidence 5677777666666554 2222 225555456677784 332211 1112456788899999998
Q ss_pred CC--h----HHHHHHHHHHHHHHHhcc--C--------CCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhh
Q 003115 397 KD--V----FYSYICRDILDYLRRDMI--G--------PGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (846)
Q Consensus 397 ~~--~----~y~~~A~~t~~fl~r~m~--~--------~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~ 460 (846)
++ + .+++.|++..+|..++-- . ..+|||.+.+ . +-- ++|...||+.+.|+.
T Consensus 305 k~~d~~ya~~~L~~A~~~~~fa~~~~~~y~~~~~~~~~~~~~~Y~ss~-~-----------~DE-l~WAAawLy~ATgd~ 371 (609)
T 1ut9_A 305 KDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDY-V-----------GDE-FYWAACELYVTTGKD 371 (609)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHCTTCCBCCCCSSSSCBSCCCCBSC-C-----------HHH-HHHHHHHHHHHHCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCcccccccccccCccCCCCCCCCC-c-----------ccH-HHHHHHHHHHHhCCH
Confidence 64 3 567889999999988421 0 0145665311 0 000 379999999999965
Q ss_pred --HHHHHHH
Q 003115 461 --AILFKEH 467 (846)
Q Consensus 461 --~~~~~~~ 467 (846)
.+.+...
T Consensus 372 ~Yl~~a~~~ 380 (609)
T 1ut9_A 372 EYKNYLMNS 380 (609)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHh
Confidence 3444443
No 333
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=83.13 E-value=27 Score=41.07 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCcccCCCcEEEEEcC--CCCC--CCCCch--------hHHHHHHHHHHHHHHHHccCChHHHHHH
Q 003115 338 QKMVLFTLQCMAKGGIHDHVGGGFHRYSVD--ERWH--VPHFEK--------MLYDQGQLANVYLDAFSLTKDVFYSYIC 405 (846)
Q Consensus 338 ~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD--~~W~--vPHFEK--------MLyDNA~Ll~~ya~Ay~~t~~~~y~~~A 405 (846)
.+.+.+.++-+.. .. .-+|||-.|..+ ..|. +| |+. -+.+.|..+.++... +.+.+...+
T Consensus 397 ~~~l~~a~~wLls--~Q-~~dGgf~~~~~~~~~~~~~~~~-F~~~~~~~d~~~vd~Ta~vl~aL~~~----g~~~~~~~i 468 (631)
T 2sqc_A 397 RDAMTKGFRWIVG--MQ-SSNGGWGAYDVDNTSDLPNHIP-FSDFGEVTDPPSEDVTAHVLECFGSF----GYDDAWKVI 468 (631)
T ss_dssp HHHHHHHHHHHHH--TC-CTTSCBCSSCSSCCCSGGGGST-TCSSSCSSCCCBHHHHHHHHHHHHTT----TCCTTSHHH
T ss_pred HHHHHHHHHHHHh--hc-CCCCCCCccCCCCccccccccc-cccCCcccCCCCchHHHHHHHHHHhc----CCCccHHHH
Confidence 4455555555543 11 235888544333 2232 23 221 234678888877753 455667789
Q ss_pred HHHHHHHHHhccCCCCceee
Q 003115 406 RDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 406 ~~t~~fl~r~m~~~~Ggfys 425 (846)
+++++||.+ ++.++||||.
T Consensus 469 ~rai~~L~~-~Q~~DGsw~g 487 (631)
T 2sqc_A 469 RRAVEYLKR-EQKPDGSWFG 487 (631)
T ss_dssp HHHHHHHHH-HCCTTSCCCC
T ss_pred HHHHHHHHH-hcCCCCCCCC
Confidence 999999987 6788999864
No 334
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=82.53 E-value=0.85 Score=44.96 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=28.9
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~e 182 (846)
+||++|.|+..||++|+.++. ++ +++.+.+ +.+.+++...
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~-~~--~~~~~~~--~v~~~~~p~~ 61 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMEN-FL--PVISQEA--GTDIGKMHIT 61 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGG-GH--HHHHHHH--TSCCEEEECC
T ss_pred CCCEEEEEECCCChhHHHhhH-HH--HHHHHHh--CCeEEEEecc
Confidence 799999999999999999985 33 4566655 2344444443
No 335
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=82.33 E-value=26 Score=39.77 Aligned_cols=119 Identities=16% Similarity=0.073 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CCCC-----C--------CCcchHHHHHHHHHHHHHHc
Q 003115 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSKA-----P--------GFLDDYAFLISGLLDLYEFG 636 (846)
Q Consensus 578 ~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg--------~~~~-----~--------~~leDyA~~i~aLl~LYe~T 636 (846)
.+..|+.++-.++||++. ++..|.+++...+| .+.. + .-.+--+.++.+|...+.+.
T Consensus 111 ~~d~ldeikwg~D~llk~--~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vf 188 (466)
T 2xfg_A 111 YNHILNNIKWACDYFIKC--HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIF 188 (466)
T ss_dssp HHHHHHHHHHHHHHHHHT--CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHh--ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 378999999999999987 34568888876553 1100 0 11222356666666677766
Q ss_pred C--C----HHHHHHHHHHHHHHHHHccc---cCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003115 637 S--G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (846)
Q Consensus 637 g--d----~~yL~~A~~L~~~~~~~F~D---~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 707 (846)
. | .++|+.|+++++.+.++--. ...++||.+. -+-.-.++++-..|++.|++
T Consensus 189 k~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~s~------------------s~~~DEl~WAAawLy~ATgd- 249 (466)
T 2xfg_A 189 KKVDGEYSKECLKHAKELFEFADTTKSDDGYTAANGFYNSW------------------SGFYDELSWAAVWLYLATND- 249 (466)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCS------------------SCSHHHHHHHHHHHHHHHCC-
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCCcCCCCccccccCCC------------------CCCchHHHHHHHHHHHHhCC-
Confidence 4 3 45688888888888775311 1112233220 01223577778889999986
Q ss_pred CchHHHHHHHHH
Q 003115 708 KSDYYRQNAEHS 719 (846)
Q Consensus 708 ~~~~y~~~A~~~ 719 (846)
..|++.++..
T Consensus 250 --~~Yl~~a~~~ 259 (466)
T 2xfg_A 250 --SSYLDKAESY 259 (466)
T ss_dssp --HHHHHHHHHT
T ss_pred --HHHHHHHHHH
Confidence 7899988764
No 336
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=78.96 E-value=38 Score=39.75 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CCCC-----C--------CCcchHHHHHHHHHHHHHHcC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSKA-----P--------GFLDDYAFLISGLLDLYEFGS 637 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg--------~~~~-----~--------~~leDyA~~i~aLl~LYe~Tg 637 (846)
+..|+.++-.++||++. ++..|.|+....+| .+.. + .-.+--+.++.+|...+.+..
T Consensus 91 ~d~ldeikwg~Dyllk~--~~~~~~~y~qVGdg~~DH~~w~~pe~~~~~r~~y~v~~~~pgsd~a~e~AAAlAaAS~vfk 168 (614)
T 1g87_A 91 KYIMDGIKWANDYFIKC--NPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFK 168 (614)
T ss_dssp HHHHHHHHHHHHHHHHT--CCSTTCEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh--ccCCCcEEEEecCCCcCccccCCcccCCCCCcceEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987 34567888765553 1100 0 111223456666666666654
Q ss_pred --C----HHHHHHHHHHHHHHHHHccc---cCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 003115 638 --G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (846)
Q Consensus 638 --d----~~yL~~A~~L~~~~~~~F~D---~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~ 708 (846)
| .++|+.|+++++.+.++--. ...++||.+. +-.-.++++-..|++.||+
T Consensus 169 ~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~ss-------------------~~~DEl~WAAawLy~ATgd-- 227 (614)
T 1g87_A 169 SSDPTYAEKCISHAKNLFDMADKAKSDAGYTAASGYYSSS-------------------SFYDDLSWAAVWLYLATND-- 227 (614)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCS-------------------CSHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCC-------------------CchhHHHHHHHHHHHHhCC--
Confidence 3 45688889999888775311 0112233221 1223577788889999996
Q ss_pred chHHHHHHHHH
Q 003115 709 SDYYRQNAEHS 719 (846)
Q Consensus 709 ~~~y~~~A~~~ 719 (846)
..|++.++..
T Consensus 228 -~~Yl~~a~~~ 237 (614)
T 1g87_A 228 -STYLDKAESY 237 (614)
T ss_dssp -HHHHHHHHHT
T ss_pred -HHHHHHHHHH
Confidence 7899988764
No 337
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}
Probab=77.54 E-value=1.7 Score=47.79 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCe--EEE-EEcC-CCCccHHHHHHHHHHHhcCCCC
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF--VSI-KVDR-EERPDVDKVYMTYVQALYGGGG 203 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~F--V~v-kvD~-ee~p~~~~~y~~~~~~~~g~~G 203 (846)
.+.++++.++++ |.| |+.+||++|+...+..++...| .| |.| .+|. ++.++ .++.++..+|...
T Consensus 251 ~~~V~~lI~~~~-VvV-Ysk~~CPyC~~Ak~~LL~~~gV------~y~eidVlEld~~~~~~e----~~~~L~~~tG~~T 318 (362)
T 2jad_A 251 IKHVKDLIAENE-IFV-ASKTYCPYSHAALNTLFEKLKV------PRSKVLVLQLNDMKEGAD----IQAALYEINGQRT 318 (362)
T ss_dssp HHHHHHHHHTCS-EEE-EECTTCHHHHHHHHHHHTTTCC------CTTTEEEEEGGGSTTHHH----HHHHHHHHHCCCS
T ss_pred HHHHHHHhccCC-EEE-EEcCCCcchHHHHHHHHHHcCC------CcceEEEEEeccccCCHH----HHHHHHHHHCCCC
Confidence 445556666655 444 6789999999865433333221 22 222 3332 22233 3333444568888
Q ss_pred CCcEEEECCCCceec
Q 003115 204 WPLSVFLSPDLKPLM 218 (846)
Q Consensus 204 ~P~~v~l~pdg~~~~ 218 (846)
+|..+| +|+.|.
T Consensus 319 VPqVFI---~Gk~IG 330 (362)
T 2jad_A 319 VPNIYI---NGKHIG 330 (362)
T ss_dssp SCEEEE---TTEEEE
T ss_pred cCEEEE---CCEEEE
Confidence 997654 456553
No 338
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=76.78 E-value=7.9 Score=38.92 Aligned_cols=77 Identities=14% Similarity=0.005 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCEE-EEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCC--CccHHHHHHHHHHHhcCCC--
Q 003115 128 EEAFAEARKRDVPIF-LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGG-- 202 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~-l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee--~p~~~~~y~~~~~~~~g~~-- 202 (846)
.+.+.+--..+.|+. |.|...||.-|..+.. .| .+||+.....+..+.+|.++ .+.+.+.| |..
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~-~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~f--------gl~~~ 188 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMH-RY--QKAAKLFQGKILFILVDSGMKENGKVISFF--------KLKES 188 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHH-HH--HHHHHHTTTTCEEEEEETTSGGGHHHHHHT--------TCCGG
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHH-HH--HHHHHHhhCCEEEEEeCCccHhHHHHHHHc--------CCCcc
Confidence 344444445666655 4566779999987664 34 45787777678888889863 22222222 554
Q ss_pred CCCcEEEECCCCc
Q 003115 203 GWPLSVFLSPDLK 215 (846)
Q Consensus 203 G~P~~v~l~pdg~ 215 (846)
++|+.++++..+.
T Consensus 189 ~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 189 QLPALAIYQTLDD 201 (227)
T ss_dssp GCSEEEEEESSSC
T ss_pred cCCEEEEEECCCC
Confidence 8999999997643
No 339
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=76.28 E-value=1.9 Score=46.85 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 382 NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
-|..+.+++++|..++++.|+++++++++||+. |+.++||+-
T Consensus 76 Ta~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 117 (332)
T 1gxm_A 76 TITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN-SQYSTGALP 117 (332)
T ss_dssp THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCTTSCCB
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-ccCCCCCcc
Confidence 578888999999999999999999999999997 999999984
No 340
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=75.85 E-value=5.1 Score=37.01 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEEec---cCChhhhhhhhcccCCHHHHHHHhc----CeEEEEEcCCCCccHHHHH
Q 003115 128 EEAFAEARKRDVPIFLSIGY---STCHWCHVMEVESFEDEGVAKLLND----WFVSIKVDREERPDVDKVY 191 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~---~wC~wC~~me~etf~d~eVa~~ln~----~FV~vkvD~ee~p~~~~~y 191 (846)
.|.++..-++|+-|+.+=|. +.|++|++..+ +|++ .|.. +|..+.|++.+..
T Consensus 10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~----------lL~~~gv~~~~~--~~v~~~~~~r~~l 68 (118)
T 2wul_A 10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQ----------ILRLHGVRDYAA--YNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHH----------HHHHTTCCSCEE--EETTSCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHH----------HHHHhCCcCeEe--ecccCCHHHHHHH
Confidence 56677777777755533343 57999998653 3433 3554 4556667765443
No 341
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=74.78 E-value=34 Score=40.13 Aligned_cols=125 Identities=12% Similarity=-0.040 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHhc---cccCCCeEEEEecCC--------CCC---CCC----------CcchHHHHHHHHHHHH
Q 003115 578 RKEYMEVAESAASFIRRHL---YDEQTHRLQHSFRNG--------PSK---APG----------FLDDYAFLISGLLDLY 633 (846)
Q Consensus 578 ~~~yLe~A~~~a~~l~~~l---~d~~~G~l~~~~~dg--------~~~---~~~----------~leDyA~~i~aLl~LY 633 (846)
.+..|+.++-.++||++.- .++..|.+++...+| .|. ..+ -.+--+.++.+|...+
T Consensus 151 ~~d~ldeikwg~Dyllkmq~~~~~~~~g~~y~qVgdg~~Dh~~w~~Pe~~~~~R~~y~v~~~~pgsd~a~~~AAAlAaAS 230 (611)
T 2yik_A 151 AVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINY 230 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTEEECTTSCEEEEEEEESCHHHHTTCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcccccccCCCCcEEEEeCCCCccccCCCChhhCCCCCcceeecCCCCccHHHHHHHHHHHHHH
Confidence 3789999999999999852 144557888876543 110 001 1111345566666666
Q ss_pred HHcC--C----HHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 003115 634 EFGS--G----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (846)
Q Consensus 634 e~Tg--d----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 707 (846)
.+.. | .++|+.|+++++.+.++- |.|...... ....|.. -+-.-.++++-..|+..||+
T Consensus 231 ~vfk~~D~~yA~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~-------~~~~Y~s--s~~~DEl~WAAawLy~ATgd- 295 (611)
T 2yik_A 231 MNFKDTDPQYAAKSLDYAKALFDFAEKNP-----KGVVQGEDG-------PKGYYGS--SKWQDDYCWAAAWLYLATQN- 295 (611)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHSC-----CCCCCGGGT-------TTTTSCC--CCSHHHHHHHHHHHHHHHCC-
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHHHcC-----CcccCCCcc-------cCcCCCC--CCcccHHHHHHHHHHHHhCC-
Confidence 6654 4 356788888888876542 223211000 0011111 11224577888889999986
Q ss_pred CchHHHHHHHHH
Q 003115 708 KSDYYRQNAEHS 719 (846)
Q Consensus 708 ~~~~y~~~A~~~ 719 (846)
..|++.+++.
T Consensus 296 --~~Yl~~a~~~ 305 (611)
T 2yik_A 296 --EHYLDEAFKY 305 (611)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 7899988764
No 342
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=74.11 E-value=18 Score=44.73 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=72.4
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---EecCCCC----
Q 003115 541 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFRNGPS---- 613 (846)
Q Consensus 541 ilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~---~~~dg~~---- 613 (846)
.+.+|..+.+.++.+.++.+||... .++.....++.++|+.++. ++ +|.+.. .+.+...
T Consensus 625 ~~~~~~~~~i~~~~~yy~~tGD~~~------------L~e~yp~lk~~l~~~~~~~-d~-~GLl~~~~~~~~DW~d~~~~ 690 (956)
T 2okx_A 625 VIPNWTFFWILACREYAAHTGNEAF------------AARIWPAVKHTLTHYLEHI-DD-SGLLNMAGWNLLDWAPIDQP 690 (956)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSSBCCSSCCCCCSSSCCCC
T ss_pred CCcChHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHhcC-CC-CCCEEeCCCCccCccCCCCC
Confidence 4457888899999999999998311 1345567778888887654 43 443321 1111110
Q ss_pred CCCCCcchHHHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCccccc
Q 003115 614 KAPGFLDDYAFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (846)
Q Consensus 614 ~~~~~leDyA~~i---~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (846)
.........+++. ..+.++.++.|++ +|.+.|.++.+.+.++|||++.|.|.+.
T Consensus 691 ~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~wd~~~g~y~d~ 751 (956)
T 2okx_A 691 NEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDC 751 (956)
T ss_dssp SSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHSEETTTTEECSE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEee
Confidence 1111234555544 4445666777763 5899999999999999999876666553
No 343
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=72.59 E-value=6.1 Score=45.82 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.+++..++++-++ |+.+||++|+...+ +.+.++-.|..+.||.++. +..+.+.++..+|...+|..
T Consensus 8 ~~~v~~~i~~~~v~v--y~~~~Cp~C~~~k~-------~L~~~~i~~~~~dv~~~~~---~~~~~~~l~~~~g~~tvP~v 75 (598)
T 2x8g_A 8 SQWLRKTVDSAAVIL--FSKTTCPYCKKVKD-------VLAEAKIKHATIELDQLSN---GSAIQKCLASFSKIETVPQM 75 (598)
T ss_dssp HHHHHHHHHHCSEEE--EECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGSTT---HHHHHHHTHHHHSCCCSCEE
T ss_pred HHHHHHHhccCCEEE--EECCCChhHHHHHH-------HHHHCCCCcEEEEcccCcc---hHHHHHHHHHHhCCceeCEE
Confidence 356666666666333 88999999997663 1222333566666665432 12233333444588889976
Q ss_pred EEECCCCceec
Q 003115 208 VFLSPDLKPLM 218 (846)
Q Consensus 208 v~l~pdg~~~~ 218 (846)
+ + +|+.+.
T Consensus 76 ~-i--~g~~ig 83 (598)
T 2x8g_A 76 F-V--RGKFIG 83 (598)
T ss_dssp E-E--TTEEEE
T ss_pred E-E--CCEEEE
Confidence 4 3 455543
No 344
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=72.35 E-value=24 Score=42.29 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--C----------CeEEEEecCCCCC
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--T----------HRLQHSFRNGPSK 614 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~--~----------G~l~~~~~dg~~~ 614 (846)
++++.||.+++. ..+ +++.+...++.+||++...... + |++-..+.+ .
T Consensus 390 alal~AL~~ag~-~~~----------------~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~---~ 449 (732)
T 1w6k_A 390 AFAIQALLEAGG-HHR----------------PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLD---C 449 (732)
T ss_dssp HHHHHHHHHTTG-GGC----------------GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTT---T
T ss_pred HHHHHHHHHcCC-Ccc----------------hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCC---C
Confidence 888999999863 222 4677889999999987654321 1 333211111 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHccccCCCcc--cccCCCCCcccc--cccC-----CC
Q 003115 615 APGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGGY--FNTTGEDPSVLL--RVKE-----DH 682 (846)
Q Consensus 615 ~~~~leDyA~~i~aLl~LYe~Tg---d~~yL~~A~~L~~~~~~~F~D~~~Ggy--f~t~~~~~~l~~--R~k~-----~~ 682 (846)
.....++-|+++.+|..+....+ +....+...+..+.+...- . .+|+| |+... ....+. ...+ ..
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q-~-~DGgw~a~~~~~-~~~~l~~i~~~e~fg~~~~ 526 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMR-N-PDGGFATYETKR-GGHLLELLNPSEVFGDIMI 526 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTC-C-TTSCBCSSSCCC-SCGGGGGGCCCSSCSSCSS
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc-C-CCCCEEeecCCC-chHHHhhCcchhccccccc
Confidence 23456778999999999987753 3334444455556665542 3 35666 33211 111100 0001 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 683 DGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 683 D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
|...+...+.++.+|..+.....+...+++....++.++.+..
T Consensus 527 d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~ 569 (732)
T 1w6k_A 527 DYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRR 569 (732)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHh
Confidence 3233445556666777666553221112344555666665544
No 345
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=71.49 E-value=7.1 Score=38.49 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=14.3
Q ss_pred CCCE-EEEEeccCChhhhh
Q 003115 138 DVPI-FLSIGYSTCHWCHV 155 (846)
Q Consensus 138 ~KpI-~l~~g~~wC~wC~~ 155 (846)
||+| ++.|-++||+.|..
T Consensus 47 Gk~vVL~fyP~~~tp~Ct~ 65 (176)
T 4f82_A 47 GKRVVIFGLPGAFTPTCSA 65 (176)
T ss_dssp TCEEEEEEESCTTCHHHHH
T ss_pred CCeEEEEEEcCCCCCCCCH
Confidence 6765 55667999999987
No 346
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=71.21 E-value=9 Score=41.58 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC---CCcchH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP---GFLDDY 622 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~---~~leDy 622 (846)
-.++.||.+|++.-++ +.|.+.|+++++.|.++-..+..|.+.-. ...|-.... -.++++
T Consensus 109 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~i~~~~v~~~~g~~~llPg~~gf~~~~~~~~npSY~ 172 (334)
T 1wzz_A 109 LLIALALGRAGKRFQR----------------PDYIQDAMAIYGDVLNLMTMKAGPYVVLMPGAVGFTKKDSVILNLSYY 172 (334)
T ss_dssp HHHHHHHHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHEEEETTEEEECSCSSSCBCSSEEEECGGGC
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhcccCCCCeEEECCCcccccCCCCCeechhhc
Confidence 5788999999999987 78999999999999887665444543321 111111100 012222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCC
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (846)
. ..++-.+++.+++..|.+.+....+.+.+... +..|
T Consensus 173 ~--p~~~~~fa~~~~~~~W~~~~~~~~~ll~~~~~-~~tG 209 (334)
T 1wzz_A 173 V--MPSLLQAFDLTADPRWRQVMEDGIRLVSAGRF-GQWR 209 (334)
T ss_dssp C--HHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCB-TTTT
T ss_pred C--HHHHHHHHHccCCchHHHHHHHHHHHHHHccc-CCCC
Confidence 2 25566677889999999999888888766543 3444
No 347
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=70.95 E-value=3.6 Score=45.91 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHc-c--CChHHHHHHHHHHHHHHHhccCCCCcee
Q 003115 382 QGQLANVYLDAFSL-T--KDVFYSYICRDILDYLRRDMIGPGGEIF 424 (846)
Q Consensus 382 NA~Ll~~ya~Ay~~-t--~~~~y~~~A~~t~~fl~r~m~~~~Ggfy 424 (846)
-|..+.+++++|+. + +++.|+++++++++||+. |+.++||+-
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 195 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-SQFPNGGWP 195 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HSCTTSCCB
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH-ccCCCCCCc
Confidence 56788999999998 7 899999999999999997 999999984
No 348
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.55 E-value=15 Score=43.97 Aligned_cols=111 Identities=6% Similarity=0.034 Sum_probs=70.8
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----cCCCC---
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----RNGPS--- 613 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~-----~dg~~--- 613 (846)
+.++..+.+.++.+.++.+||... .++.....++..+|+.++. ++ +|.+.... .+...
T Consensus 382 ~~d~~l~wi~~~~~yy~~tGD~~~------------L~e~~p~l~~~ld~~~~~~-d~-~GL~~~~~G~W~~~dW~d~~~ 447 (739)
T 3cih_A 382 IMDYTFYWFLSVYDYYMYSGDRHF------------VNQLYPRMQTMMDYVLGRT-NK-NGMVEGMSGDWVFVDWADGYL 447 (739)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSCBCCCTTCBCCSCCCTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhc-CC-CCCcccCCCCcccCCCccccc
Confidence 345777788899999999998321 2455677788888887754 43 44322110 11111
Q ss_pred CCCC-CcchHHHHHH---HHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccc
Q 003115 614 KAPG-FLDDYAFLIS---GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (846)
Q Consensus 614 ~~~~-~leDyA~~i~---aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (846)
...+ ..+..+++.. .+.++.++.|++ +|.+.|.+|-+.+.++|||++.|.|++
T Consensus 448 ~~~G~~~~~~a~~y~al~~~a~lA~~lG~~~~A~~y~~~A~~lk~a~~~~~wd~~~G~y~~ 508 (739)
T 3cih_A 448 DKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508 (739)
T ss_dssp CCSSEEHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCcccCeeEe
Confidence 0111 2334555444 445666777874 588999999999999999988777664
No 349
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=69.61 E-value=20 Score=39.57 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=37.2
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003115 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (846)
Q Consensus 542 lt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~ 607 (846)
+++|-..+...|++.++++|+. ..+|.+.|.++.+.+.+ +|+++.|.++..
T Consensus 237 lna~~~~~~~~la~la~~lg~~--------------a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~ 287 (420)
T 2z07_A 237 FNAILQRANRDLYALAVLLQED--------------PYEIEEWIVRGEVGLEA-LWDREAGFYFSW 287 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHH-TEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCcc--------------HHHHHHHHHHHHHHHHH-hhCcccCeeEee
Confidence 3344444455777777788762 27899999999999999 999887766533
No 350
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=69.22 E-value=26 Score=42.13 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCC-CCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC----CCCCcch
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPV-VGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK----APGFLDD 621 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~-~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~----~~~~leD 621 (846)
.+.+.++.+.++.+||...=.+ .-|. ++ ......+..++..+|+..++ ++ +|.+.....|.... .....+-
T Consensus 429 lw~~~~~~~y~~~tGD~~~L~e-~~p~~~~-~~~~v~e~~~~~~~~~~~~~-~~-~GL~~~~~~DW~D~~~~~~g~~v~~ 504 (807)
T 1v7w_A 429 LWLIPTICKYVMETGETSFFDQ-MIPYADG-GEASVYEHMKAALDFSAEYV-GQ-TGICKGLRADWNDCLNLGGGESSMV 504 (807)
T ss_dssp GGHHHHHHHHHHHHCCGGGGGC-EEECTTS-CEEEHHHHHHHHHHHHHHSB-CT-TSCBEEETCSSSTTCCCEEEEEHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHhc-ccccccC-CcchHHHHHHHHHHHHHhcC-CC-CCCcccCCCCCCCcCCCCCCeehhH
Confidence 6678899999999998321000 0000 00 00012346888889988765 54 56554332222110 1112333
Q ss_pred HHHH---HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCC
Q 003115 622 YAFL---ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGG 662 (846)
Q Consensus 622 yA~~---i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~G 662 (846)
.|++ +..+.++.+..|++ +|.+.|.+|.+.+.++|||+++|
T Consensus 505 ~a~~y~al~~~a~la~~lG~~~~a~~~~~~A~~lk~~~~~~~w~~~~~ 552 (807)
T 1v7w_A 505 SFLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGG 552 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4444 44455666777874 58899999999999999997644
No 351
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=67.25 E-value=25 Score=38.86 Aligned_cols=129 Identities=8% Similarity=-0.055 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccccCCCeEEEEecC-CCC--CCCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcccc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHSFRN-GPS--KAPGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~d-g~~--~~~~~leDyA~~i~aLl~LYe~Tgd~---~yL~~A~~L~~~~~~~F~D~ 659 (846)
.++..|.++++..+.+|.+-|.+.. |.. ....=.++=-+.+.||+.+.+..|+. .|++.|.+|++.+.++-...
T Consensus 98 D~l~~wt~~~l~~~~~~L~aW~~~~~g~~~~d~n~AtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il~~i~~~~~~~ 177 (386)
T 1v5d_A 98 DGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVT 177 (386)
T ss_dssp HHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHTHHHHHBC
T ss_pred HHHHHHHHHHhccCCCCCeEEEECCCCCcCCCCCCCCHHHHHHHHHHHHHHHHcCCCchHhHHHHHHHHHHHHHHhcccC
Confidence 4566777778764556766666532 221 22344555678999999999999998 89999999999888775543
Q ss_pred CCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003115 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~~i 727 (846)
.++..-..+. ..+..+..-|| =.+...|-.+++++++ ..|.+.++..++.+....
T Consensus 178 ~~~~l~~g~~--------~~~~~~~~npS--Y~~p~~l~~f~~~~~~---~~W~~v~~~~~~~l~~~~ 232 (386)
T 1v5d_A 178 NNNQLNLGDW--------DSKSSLDTRPS--DWMMSHLRAFYEFTGD---KTWLTVINNLYDVYTQFS 232 (386)
T ss_dssp TTSSBCSSTT--------SCTTCCCBCGG--GCCHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred CCCeeeeccc--------CCCCCCeechh--hccHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Confidence 3322111000 00111111222 1344567778888875 568888887777765543
No 352
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=66.77 E-value=1.6e+02 Score=32.67 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHH-h--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 003115 547 GLVISSFARASKI-L--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (846)
Q Consensus 547 glmI~ALa~A~~v-~--~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leD 621 (846)
+..|.+|++++.. . ++ +.|.+++.+..+||+..... +||+-..+.+... ....|-||
T Consensus 152 a~vl~aL~rv~~~~t~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpdn~~y~~~IpFnDD 213 (408)
T 1r76_A 152 VTEIRFLAQVVSQLAPEEA----------------APYRDAALKGIEYLLASQFP--NGGWPQVWPLEGGYHDAITYNDD 213 (408)
T ss_dssp HHHHHHHHHHHHHSCGGGC----------------HHHHHHHHHHHHHHHHHSCT--TSCCBSBSSCCCGGGGSEECGGG
T ss_pred HHHHHHHHHHHhhcccccc----------------HHHHHHHHHHHHHHHHccCC--CCCCcCcCccccccccCCCcCcH
Confidence 7889999999987 5 44 78999999999999987764 4655333222111 11233344
Q ss_pred H-HHHHHHHHHHHHHcC-----CH----HHHHHHHHHHHHHHHHccccCCCccc
Q 003115 622 Y-AFLISGLLDLYEFGS-----GT----KWLVWAIELQNTQDELFLDREGGGYF 665 (846)
Q Consensus 622 y-A~~i~aLl~LYe~Tg-----d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (846)
- +.+++.|..+++..+ ++ +....+.+-.+.++..-. +.+|.+|
T Consensus 214 vt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe-~~dGsw~ 266 (408)
T 1r76_A 214 ALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQV-VQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSC-EETTEEC
T ss_pred HHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhc-ccCCccc
Confidence 4 456666667766323 33 444444444445444332 2246555
No 353
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=66.15 E-value=25 Score=40.50 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=55.8
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 003115 543 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 618 (846)
Q Consensus 543 t~WNglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~ 618 (846)
++-|++|.. .|++.++.+|+... ..+|.+.|.++.+.+.+.||+++.|.++.. ..+|+......
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~------------a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~~~~~~~ 372 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAM------------ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLT 372 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCCB
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCCEeeeeh
Confidence 345666655 56677777876311 257999999999999999999887766432 22332211111
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 003115 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D 658 (846)
+.+++-|+----++ ++|..+.+.+.+.|+.
T Consensus 373 -------~s~~~PL~~gi~~~---e~a~~v~~~l~~~l~t 402 (535)
T 2jg0_A 373 -------AAALFPLYVNAAAK---DRANKMATATKTHLLQ 402 (535)
T ss_dssp -------GGGGHHHHTTCSCH---HHHHHHHHHHHHHTEE
T ss_pred -------hhhHHHHhcCCCCH---HHHHHHHHHHHHHhcc
Confidence 11222222111122 3577788888778875
No 354
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=64.78 E-value=6.8 Score=37.82 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=29.5
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcC
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ 181 (846)
..++++|.|+..+|+||..++...+ +++.+.... .|+++-++.
T Consensus 16 ~~~~~~ief~d~~CP~C~~~~~~l~--~~l~~~~~~~v~~~~~~l~~ 60 (195)
T 3c7m_A 16 NADKTLIKVFSYACPFCYKYDKAVT--GPVSEKVKDIVAFTPFHLET 60 (195)
T ss_dssp SCTTEEEEEECTTCHHHHHHHHHTH--HHHHHHTTTTCEEEEEECTT
T ss_pred CCCcEEEEEEeCcCcchhhCcHHHH--HHHHHhCCCceEEEEEecCc
Confidence 4677889999999999999987432 455554433 455555554
No 355
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=64.72 E-value=47 Score=40.29 Aligned_cols=113 Identities=12% Similarity=-0.054 Sum_probs=66.1
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh-----HHHHHHHHHHHHHHHHhccccCCCeEEEE--
Q 003115 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR-----KEYMEVAESAASFIRRHLYDEQTHRLQHS-- 607 (846)
Q Consensus 535 P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~-----~~yLe~A~~~a~~l~~~l~d~~~G~l~~~-- 607 (846)
++.|+- ...|.++.+..+.+||...=. -..+... ....+..++..+++.+++ ++ +|.....
T Consensus 412 ~~~D~~------lW~i~av~~Y~~~TGD~~~L~----e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GL~~~g~~ 479 (811)
T 3qde_A 412 NFNDDP------LWLILATAAYIKETGDYSILK----EQVPFNNDPSKADTMFEHLTRSFYHVVNNL-GP-HGLPLIGRA 479 (811)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGG----SEEEETTEEEEEEEHHHHHHHHHHHHHTCB-CT-TSSBBCBTC
T ss_pred Ccccch------hHHHHHHHHHHHHHCCHHHHH----hhhhhhcCCcccccHHHHHHHHHHHHHhcC-CC-CCCcccccC
Confidence 366766 678999999999999832100 0000000 124567788888888765 43 4433221
Q ss_pred -ecCCCCC------C--------------CCCcchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccc
Q 003115 608 -FRNGPSK------A--------------PGFLDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 608 -~~dg~~~------~--------------~~~leDyA---~~i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~ 659 (846)
|.|+-.. + ....+-.+ .++..+.++.+..|++ +|.+.|++|.+.+.++|||.
T Consensus 480 DWnD~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~~~a~lA~~lGd~~~A~~~~~~A~~lk~a~~~~~Wdg 559 (811)
T 3qde_A 480 DWNDCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYDG 559 (811)
T ss_dssp SSSTTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSBCS
T ss_pred CchhhccccccccccCccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3333211 0 01112223 3455566677778884 58899999999999999973
No 356
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=62.06 E-value=5.8 Score=41.96 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~ 172 (846)
..+|.+++.|.-..|++||+++. ++.+.+++
T Consensus 145 ~~gk~~I~vFtDp~CPYCkkl~~------~l~~~l~~ 175 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPHCQKELT------KLRDHLKE 175 (273)
T ss_dssp GGTTCEEEEEECTTCHHHHHHHH------THHHHHHH
T ss_pred CCCCeEEEEEECcCChhHHHHHH------HHHHHhhC
Confidence 56899999999999999999985 44445553
No 357
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=61.42 E-value=15 Score=37.13 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=45.2
Q ss_pred HhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003115 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (846)
Q Consensus 135 k~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg 214 (846)
+...+++.+.|...-|..++...- +++....|.|..-.+..+++.+.| |+.++|+.|+++++|
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~~~~---------d~~~~~~i~v~~~~~~~~~l~~~f--------~v~~~Pslvl~~~~g 216 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLAREVAL---------DLSQHKGVAVRRVLNTEANVVRKF--------GVTDFPSCYLLFRNG 216 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHHHHH---------HTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETTS
T ss_pred cCCCceEEEEEEECCcchHHHHHH---------HhccCCceEEEEEeCchHHHHHHc--------CCCCCCeEEEEeCCC
Confidence 467788888888776655544332 334333455544334445666666 888999999999999
Q ss_pred ceecc
Q 003115 215 KPLMG 219 (846)
Q Consensus 215 ~~~~~ 219 (846)
++...
T Consensus 217 ~~~~~ 221 (244)
T 3q6o_A 217 SVSRV 221 (244)
T ss_dssp CEEEC
T ss_pred CeEee
Confidence 98753
No 358
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=60.70 E-value=4.6 Score=39.88 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ 181 (846)
+||.++.|...+|++|+.++...-.-+++.+.+.+ .|+.+.++.
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~ 66 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF 66 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence 48999999999999999999732113577776643 466655554
No 359
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=60.52 E-value=1.2e+02 Score=37.90 Aligned_cols=70 Identities=11% Similarity=-0.013 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC-CCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHH
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLV-WAIELQNTQDEL 655 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~-~~leDyA~~i~aLl~LYe~Tgd~~yL~-~A~~L~~~~~~~ 655 (846)
+.|++..+||.+.... .+|.+.+.+ .+|++... ..+|-++..+.++..+++ + |..... ..+.+++.+.++
T Consensus 348 e~A~~~l~~L~~~Q~~-~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~-~-d~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 348 EAAARGVEWLFTYQQQ-PDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGR-T-DAGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp HHHHHHHHHHHHHTCC-TTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTC-C-CHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHh
Confidence 5678888888766523 257777776 46665443 266888999988888765 4 444444 677777777665
No 360
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=60.23 E-value=11 Score=35.02 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=27.3
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHH
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDK 189 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~ 189 (846)
+.-+.+++|++|++.++ -..+..+|+.+ .-...+|++..|+..+
T Consensus 2 V~vYtt~~c~~c~~kk~----c~~aK~lL~~kgV~feEidI~~d~~~r~ 46 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKK----QQDVLGFLEANKIGFEEKDIAANEENRK 46 (121)
T ss_dssp EEEEECTTCSCHHHHHH----HHHHHHHHHHTTCCEEEEECTTCHHHHH
T ss_pred EEEEecCCCCCccchHH----HHHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 44567999999987664 34566788763 3333456665555433
No 361
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=57.69 E-value=1.1e+02 Score=33.27 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC-C----CCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHSFR-NGPS-K----APGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELF 656 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~-dg~~-~----~~~~leDyA~~i~aLl~LYe~Tgd~---~yL~~A~~L~~~~~~~F 656 (846)
.++..|.+.++.+ +|.+-|.+. +|+. . ...-.++=-..+.||+.+.+..|+. .|++.|.+|++.+.++-
T Consensus 82 d~l~~wt~~~~~~--~~l~aW~~~~~g~~~~~~d~~~~AtDgDl~IA~ALl~A~~~W~~~g~~~Y~~~A~~i~~~i~~~~ 159 (363)
T 1kwf_A 82 DDLYRYVKSHFNG--NGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHC 159 (363)
T ss_dssp HHHHHHHHTTBCT--TSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCeEEEECCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHh
Confidence 4566777778743 566666653 2321 1 1123555578999999999999988 89999999999999886
Q ss_pred cccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 657 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 657 ~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
+.+ |.+.-.+.+. ....+..-||= .+...+-.+++++++ ..|.+.++..++.+..
T Consensus 160 ~~~--~~~~l~pg~~-------~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~~l~~ 214 (363)
T 1kwf_A 160 VEH--GSYVLKPGDR-------WGGSSVTNPSY--FAPAWYKVYAQYTGD---TRWNQVADKCYQIVEE 214 (363)
T ss_dssp BCT--TTCCBCSBSS-------SCBTTBBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred ccC--CCeEEecccc-------CCCCCEecchh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHH
Confidence 652 3221222110 00001112322 234455667777764 5688888877666544
No 362
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=57.10 E-value=58 Score=39.54 Aligned_cols=116 Identities=12% Similarity=-0.079 Sum_probs=66.9
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCC-C-CChHHHHHHHHHHHHHHHHhccccCCCeEEEE---ec
Q 003115 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVV-G-SDRKEYMEVAESAASFIRRHLYDEQTHRLQHS---FR 609 (846)
Q Consensus 535 P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~-~-~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~---~~ 609 (846)
++.|+- ...|.++.+..+.+||...=.+ .-|.. + .......+..++..+++.+++ ++ +|...-. |.
T Consensus 419 ~~~D~~------lWl~~av~~Yi~~TGD~~~L~e-~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GLp~~g~gDWn 489 (822)
T 3rrs_A 419 GFNDDP------LWLIAGTAAYIKETGDFSILDE-PVPFDNEPGSEVPLFEHLTRSFEFTVTHR-GP-HGLPLIGRADWN 489 (822)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGGS-EECSTTCTTCCEEHHHHHHHHHHHHHHSB-CT-TSSBBCBTCSSS
T ss_pred cccchH------hHHHHHHHHHHHHHCCHHHHHh-hhhhhccccccccHHHHHHHHHHHHHhcC-CC-CCCcccCCCcch
Confidence 366766 7789999999999998321000 00000 0 000124567888899988766 32 4433211 33
Q ss_pred CCCCC------CC-----------CC---cchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcccc
Q 003115 610 NGPSK------AP-----------GF---LDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 659 (846)
Q Consensus 610 dg~~~------~~-----------~~---leDyA---~~i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~ 659 (846)
|+-.. +. +. .+-.+ .++..+.++.+..|++ +|.+.|++|.+.+.++|||.
T Consensus 490 D~ln~~~~~~~vg~~~~~~~p~~~~~Gesv~~~al~y~AL~~~a~lA~~~G~~~~A~~~~~~A~~lk~a~~~~~Wdg 566 (822)
T 3rrs_A 490 DCLNLNCFSTTPGESFQTTENQAGGVAESTFIAAQFVLYGEQYAELAARRGLADVADRARGHVAEMRDALLTDGWDG 566 (822)
T ss_dssp TTCCTTCCCCSTTCCTTTCCSSCCCCCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTBCS
T ss_pred hhcccccccccccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCc
Confidence 32211 00 11 12223 3455566777778885 58899999999999999973
No 363
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=56.74 E-value=20 Score=37.72 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=16.5
Q ss_pred cCCC--EEEEEeccCChhhhhhhh
Q 003115 137 RDVP--IFLSIGYSTCHWCHVMEV 158 (846)
Q Consensus 137 e~Kp--I~l~~g~~wC~wC~~me~ 158 (846)
.++| .+..|+..+|++|...++
T Consensus 39 ~~~~~~~VelyTs~gCp~C~~Ak~ 62 (270)
T 2axo_A 39 QEAVKGVVELFTSQGCASCPPADE 62 (270)
T ss_dssp CSCCCCEEEEEECTTCTTCHHHHH
T ss_pred ccCCCcEEEEEeCCCCCChHHHHH
Confidence 3444 555689999999998664
No 364
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=56.51 E-value=36 Score=37.44 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHH---HHHHHHHHcCC--HHHHHHHHHHHHHHHHHccccCCCcccccC
Q 003115 622 YAFLIS---GLLDLYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (846)
Q Consensus 622 yA~~i~---aLl~LYe~Tgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (846)
.|++.. .+.++++..|+ .+|.+.|.++.+.+.+ |||++.|.||+..
T Consensus 238 na~~~~~~~~la~la~~lg~~a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~~ 288 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQEDPYEIEEWIVRGEVGLEA-LWDREAGFYFSWD 288 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-TEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH-hhCcccCeeEeee
Confidence 354444 44556666775 6899999999999999 9999888888654
No 365
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=56.12 E-value=16 Score=40.51 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
-.++.||..|++.-++. | ..+|.+.|+++++.|.++...+.++.+. ..++.....-.++.-=+..
T Consensus 138 l~IA~ALl~A~~~Wg~~-----------g--~~~Y~~~A~~il~~i~~~~~~~~~~~l~--~g~~~~~~~~~~npSY~~p 202 (386)
T 1v5d_A 138 LDIAYSLLLAHKQWGSN-----------G--TVNYLKEAQDMITKGIKASNVTNNNQLN--LGDWDSKSSLDTRPSDWMM 202 (386)
T ss_dssp HHHHHHHHHHHHHHCSS-----------S--SSCHHHHHHHHHHHTHHHHHBCTTSSBC--SSTTSCTTCCCBCGGGCCH
T ss_pred HHHHHHHHHHHHHcCCC-----------c--hHhHHHHHHHHHHHHHHhcccCCCCeee--ecccCCCCCCeechhhccH
Confidence 57889999999999871 0 0279999999999998876654444332 1111110111111111234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
.+|-.+|+++++..|.+.+....+.+.+.
T Consensus 203 ~~l~~f~~~~~~~~W~~v~~~~~~~l~~~ 231 (386)
T 1v5d_A 203 SHLRAFYEFTGDKTWLTVINNLYDVYTQF 231 (386)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45666788899999999888877775543
No 366
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=55.54 E-value=9.4 Score=36.27 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred cCCCEEEEEeccCChhhhhhhh
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEV 158 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~ 158 (846)
.++|++|.|..-.|++|+.++.
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~ 41 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEP 41 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEECCCCHhHHHHhH
Confidence 4689999999999999999975
No 367
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=54.59 E-value=20 Score=40.38 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEE
Q 003115 286 RLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYS 365 (846)
Q Consensus 286 ~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYs 365 (846)
++.++-+.+......|||+...+- .+..+-+.+.....-+. ..+...++-+...|..|.. -+|||..|
T Consensus 76 ~~hi~~l~~~lq~~~gg~~a~D~~-r~~l~y~~l~aL~lLg~----~~~~~~~~r~v~~l~s~Q~------~dGGf~g~- 143 (437)
T 2h6f_B 76 EKHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLDE----PIPQIVATDVCQFLELCQS------PEGGFGGG- 143 (437)
T ss_dssp HHHHHHHHHHTTEECGGGGGGTTC-HHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHBC------TTSSBBSS-
T ss_pred HHHHHHHHHcCCCCCCCcccccCC-CccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhCC------CCCCcCCc-
Confidence 455666666655678888875443 23333322322222110 1123444555556666633 46999874
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-HHHH-HHHHHHHHHHHhccCCCCceeeec
Q 003115 366 VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-FYSY-ICRDILDYLRRDMIGPGGEIFSAE 427 (846)
Q Consensus 366 vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~-~y~~-~A~~t~~fl~r~m~~~~Ggfysa~ 427 (846)
.|..+|-. .-...+.+++ +.+.. .+.+ ..+++++||.+ ++.++|||+...
T Consensus 144 ---~~~~~~i~----~T~~Al~aL~----~lg~~~~~~~i~i~kav~~L~s-~Q~~DGsf~~~~ 195 (437)
T 2h6f_B 144 ---PGQYPHLA----PTYAAVNALC----IIGTEEAYDIINREKLLQYLYS-LKQPDGSFLMHV 195 (437)
T ss_dssp ---TTCCBCHH----HHHHHHHHHH----HHCCHHHHTTSCHHHHHHHHHT-TBCTTSCBBSST
T ss_pred ---cCCCcchh----HHHHHHHHHH----HhCCcccccchHHHHHHHHHHH-hCCCCCCeeecC
Confidence 37777643 2222222222 23332 1111 26789999987 788999998643
No 368
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=54.13 E-value=16 Score=39.91 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCC-Ccc
Q 003115 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG-GGY 664 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~-Ggy 664 (846)
.++.+|.+.++. +++.+.|.+..+......-++|=-..++||+.+.+..+++.|.+.|.+|.+.+.++-..... ..|
T Consensus 82 d~l~~~t~~~l~--~~~L~sWr~~~~~~~~nNAtdgDl~IA~ALl~A~~~W~~~~Y~~~A~~I~~~i~~~~~~~g~l~~~ 159 (350)
T 3ren_A 82 DEHFDIVKEMRL--KNGLISWRKEGDENSPSSATIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEENETLVDY 159 (350)
T ss_dssp HHHHHHHHTTBC--TTSSBCSEEETTEECSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEETTEECSE
T ss_pred HHHHHHHHHHhc--cCCceEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHccccCcccCC
Confidence 467788888987 46777777643322133334455689999999999999999999999999999987654210 123
Q ss_pred cccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003115 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (846)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~~~~ 725 (846)
|+.... ..+++ || =.+..+|-.|+.+. ..+.+.++..++.+..
T Consensus 160 ~d~~~~--~~~ln---------~S--Y~~~~a~~~f~~~~-----~~W~~l~~~g~~lL~~ 202 (350)
T 3ren_A 160 IDNYGK--GNTTT---------LC--YLDLPTMKLLSQVD-----KKWEGIYEKSNSIIEN 202 (350)
T ss_dssp ECSSCB--CSEEE---------GG--GCCHHHHHHHHHHC-----THHHHHHHHHHHHHHT
T ss_pred CCccCC--CCEee---------hH--hcCHHHHHHHHHhc-----chHHHHHHHHHHHHHh
Confidence 322111 11121 11 13445566667663 3577777766666554
No 369
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=49.70 E-value=1.4e+02 Score=33.10 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=80.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHh-----h-------hcCCCC-CCCCchhhhchHHH-HHHHHHHHHHHhhhhhhhhcc
Q 003115 504 ASKLGMPLEKYLNILGECRRKLFD-----V-------RSKRPR-PHLDDKVIVSWNGL-VISSFARASKILKSEAESAMF 569 (846)
Q Consensus 504 a~~~g~~~~~l~~~l~~~r~~L~~-----~-------R~~R~~-P~~DdKilt~WNgl-mI~ALa~A~~v~~d~~~~~~~ 569 (846)
....|.+.+++.++|+++-+.++. . ...|+. +. +..|.+--.|. |+-|+.. +|
T Consensus 18 ~~~~g~~~~~~~~~~~~~~~~wf~g~~~k~~y~~~~~~~GrviD~~-n~~v~SEGqgYGMl~Av~~-----~d------- 84 (396)
T 1wu4_A 18 FKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTG-NLDVRTEGMSYGMMMAVQM-----DR------- 84 (396)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTT-TTBEEHHHHHHHHHHHHHT-----TC-------
T ss_pred hhhcCCCHHHHHHHHHHHHHHHhcCCcchheeEecCCCCeEEEECC-CCCcccHHHHHHHHHHHHc-----CC-------
Confidence 345788999999999988777741 1 012221 11 12223444443 2222211 33
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhccccC---CCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcC-----CH
Q 003115 570 NFPVVGSDRKEYMEVAESAASFIRRHLYDEQ---THRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGS-----GT 639 (846)
Q Consensus 570 ~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~---~G~l~~~~~-dg~~-~~~~~leDyA~~i~aLl~LYe~Tg-----d~ 639 (846)
+ ..=.++..|.+++|..++ +|.+-|.+. +|+. ....-+++=-+.+.||+.+.+..| +.
T Consensus 85 ---------~---~~FD~l~~wt~~~l~~~~~~~~~L~aW~~~~~~~~~~~n~AtDgDl~IA~ALl~A~~~Wg~~~g~~~ 152 (396)
T 1wu4_A 85 ---------K---DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPF 152 (396)
T ss_dssp ---------H---HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTC
T ss_pred ---------H---HHHHHHHHHHHHHhccCCcccCCCceEEECCCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcH
Confidence 1 222467788888876555 566666654 3322 123345555689999999999999 68
Q ss_pred HHHHHHHHHHHHHHHHccc
Q 003115 640 KWLVWAIELQNTQDELFLD 658 (846)
Q Consensus 640 ~yL~~A~~L~~~~~~~F~D 658 (846)
.|++.|..|++.+.++=..
T Consensus 153 ~Y~~~A~~il~~i~~~~~~ 171 (396)
T 1wu4_A 153 NYSEQARKLLHTCVHNGEG 171 (396)
T ss_dssp CHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 8999999999999877554
No 370
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=48.90 E-value=1.3e+02 Score=37.60 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhccccC-----CCeEEEEecCCC
Q 003115 579 KEYMEVAESAASFIRRHLYDEQ-----THRLQHSFRNGP 612 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~l~d~~-----~G~l~~~~~dg~ 612 (846)
.+|.+.|.++.+.|.+++|+++ .|.|.+...+|.
T Consensus 464 ~~w~~~Ad~i~~~i~~~~w~~~g~~~~~g~f~r~~~dg~ 502 (1020)
T 1ulv_A 464 AVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGN 502 (1020)
T ss_dssp HHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccCeeEEEecCCC
Confidence 5789999999999999999976 456665554444
No 371
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=45.33 E-value=3.1e+02 Score=32.61 Aligned_cols=238 Identities=11% Similarity=-0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee-eecc---CCCccccccccccCCceEEecHHHHHHHh
Q 003115 382 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF-SAED---ADSAETEGATRKKEGAFYVWTSKEVEDIL 457 (846)
Q Consensus 382 NA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~m~~~~Ggfy-sa~D---ADs~~~~~~~~~~EGayY~wt~~Ei~~~L 457 (846)
+...+..++-||++|+|..|.+.|++.+.-+.. +.|.|... ..+| +.. ++.....++.+
T Consensus 208 ~~~~l~~la~ay~ltgd~kya~~a~~~L~~~~~--w~p~~~~~~~~~dl~~a~~---------------~~~~a~aYD~l 270 (776)
T 3a0o_A 208 VIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAA--WDTKGATSRAYNDEAGFRV---------------VVALAWGYDWL 270 (776)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--SCTTSTTSTTTCHHHHHHH---------------HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--cCCCCccccccccHHHHHH---------------HHHHHHHHHHh
Q ss_pred hhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHH---HHhhhcCCCC
Q 003115 458 GEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRK---LFDVRSKRPR 534 (846)
Q Consensus 458 ~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~---L~~~R~~R~~ 534 (846)
.+ .+++++.....+.+.++ ++..-.+|.+
T Consensus 271 ~~------------------------------------------------~L~~~~r~~i~~~l~~~~~~~~~~~~~~~~ 302 (776)
T 3a0o_A 271 YD------------------------------------------------HLSEDERRTVRSVLLERTREVADHVIAHAR 302 (776)
T ss_dssp TT------------------------------------------------TSCHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred Hh------------------------------------------------hcCHHHHHHHHHHHHHHHHHHHHhhccccc
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCC
Q 003115 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL-YDEQTHRLQHSFRNGPS 613 (846)
Q Consensus 535 P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l-~d~~~G~l~~~~~dg~~ 613 (846)
-..--.-..-||. +..+|.-++.++.++.... .+|++.|.+..+.....+ .+ +|.. .+|..
T Consensus 303 ~~~~~~~~~NW~~-~~~~l~~aalal~~e~~~a-----------~~wl~~a~~~l~~~l~~~~~~--DG~~----~EG~~ 364 (776)
T 3a0o_A 303 IHVFPYDSHAVRS-LSAVLTPACIALQGESDEA-----------GEWLDYTVEFLATLYSPWAGT--DGGW----AEGPH 364 (776)
T ss_dssp TTTCTTCHHHHHH-HHHTHHHHHHHHTTSCHHH-----------HHHHHHHHHHHHHTCCTTBCT--TSCB----TTCHH
T ss_pred ccccCCCCCcHHH-HHHHHHHHHHhhcCCcHHH-----------HHHHHHHHHHHHHhcccccCC--CCCC----ccchh
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHH
Q 003115 614 KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 693 (846)
Q Consensus 614 ~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~ 693 (846)
-..-....+..++.++..... -|--......++...+..... .++.+....|........ . ..+
T Consensus 365 Y~~~~~~~~~~~~~~l~~~~g--~d~~~~p~l~~~~~~~~~~~~---p~g~~~~fgDs~~~~~~~--~---------~~~ 428 (776)
T 3a0o_A 365 YWMTGMAYLIEAANLIRSYIG--YDLYQRPFFQNTGRFPLYTKA---PGTRRANFGDDSTLGDLP--G---------LKL 428 (776)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCGGGSHHHHHTTHHHHHHSC---TTCSSCSCSCCTTTTSCC--C---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC--cchhhCHhHHHHHHHHHHeeC---CCCcEeecCCCCCccCCC--h---------hHH
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003115 694 VINLVRLASIVAGSKSDYYRQNAEHSLA 721 (846)
Q Consensus 694 a~~L~rL~~lt~~~~~~~y~~~A~~~l~ 721 (846)
+.+|..++.++++ +.+...+.++.+
T Consensus 429 ~~~l~~~a~~~~d---~~~~~~~~~~~~ 453 (776)
T 3a0o_A 429 GYNVRQFAGVTGN---GHYQWYFDHIKA 453 (776)
T ss_dssp HHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHhh
No 372
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=44.43 E-value=5.2e+02 Score=31.61 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc---c
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL---D 658 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy-A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~---D 658 (846)
+.+++..+.+.+... .+|.+.+...++ ......|+ .+++.++.++|+.|||.++|+..-..++...+.+. |
T Consensus 595 ~lar~~L~~l~~~Q~--~dG~ip~~~p~~---~~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d 669 (956)
T 2okx_A 595 EIVERCLNLVPGSAD--ETPLYLDQVPSA---WSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHID 669 (956)
T ss_dssp HHHHHHHHHGGGGTT--TCTTCCSBSSCS---SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhhcc--cCCCcCcccccc---ccCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555555544332 245554433221 11233456 46788999999999999999766555554444432 3
Q ss_pred cCCCcccccCCCCCcccccccCC---CCCCCCChHHHHH---HHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 003115 659 REGGGYFNTTGEDPSVLLRVKED---HDGAEPSGNSVSV---INLVRLASIVAGSK-SDYYRQNAEHSLAVFETRL 727 (846)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~---~D~a~PS~Nsv~a---~~L~rL~~lt~~~~-~~~y~~~A~~~l~~~~~~i 727 (846)
+ +| +..... ... ..+.+. .++.....|+.+. ..+.+|+++.|++. ...|++.|+++-+.|....
T Consensus 670 ~-~G-Ll~~~~--~~~-~DW~d~~~~~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~ 740 (956)
T 2okx_A 670 D-SG-LLNMAG--WNL-LDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVL 740 (956)
T ss_dssp T-TS-SBCCSS--CCC-CCSSSCCCCSSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHS
T ss_pred C-CC-CEEeCC--CCc-cCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3 23 222110 000 001110 0111112344433 33557777777632 3568999998888876654
No 373
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=41.69 E-value=3e+02 Score=32.09 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CCCC-----CCC--------cchHHHHHHHHHHHHHHc
Q 003115 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSKA-----PGF--------LDDYAFLISGLLDLYEFG 636 (846)
Q Consensus 578 ~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg--------~~~~-----~~~--------leDyA~~i~aLl~LYe~T 636 (846)
.+..|+.++-.++||++... ..+.|+....+| .+.. +.+ .+--+.++.+|...+.+.
T Consensus 90 ~~d~ldeikwg~Dyllk~~~--~~~~~y~qVGdg~~DH~~w~~pe~m~~~r~~y~~~~~~pgsd~a~~~AAAlAaAS~vf 167 (605)
T 1tf4_A 90 MPYLKDNLRWVNDYFIKAHP--SPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVF 167 (605)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--BTTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCcCccccCChhhCCCCCceeEecCCCCcchHHHHHHHHHHHHHhhc
Confidence 37899999999999998753 346677665443 1100 000 122234555566666665
Q ss_pred C--CH----HHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCch
Q 003115 637 S--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSD 710 (846)
Q Consensus 637 g--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~ 710 (846)
. |+ ++|+.|+++++.+.++ .|. |..... ....|. +.-+-.-.++++-..|++.||+ .
T Consensus 168 k~~D~~yA~~~L~~Ak~~~~fA~~~-----~g~-y~~~~~-------~~~~Y~-s~s~~~DEl~WAAawLy~ATgd---~ 230 (605)
T 1tf4_A 168 ADDDPAYAATLVQHAKQLYTFADTY-----RGV-YSDCVP-------AGAFYN-SWSGYQDELVWGAYWLYKATGD---D 230 (605)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS-----CCC-GGGTST-------THHHHC-CSSCSHHHHHHHHHHHHHHHCC---H
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHc-----CCC-cCCCCC-------cccccc-CCCCCchHHHHHHHHHHHHhCC---H
Confidence 5 44 5678888888777653 222 221110 000000 0011234677788889999986 7
Q ss_pred HHHHHHHHHH
Q 003115 711 YYRQNAEHSL 720 (846)
Q Consensus 711 ~y~~~A~~~l 720 (846)
.|++.++...
T Consensus 231 ~Yl~~a~~~~ 240 (605)
T 1tf4_A 231 SYLAKAEYEY 240 (605)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 8999887643
No 374
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=40.86 E-value=1.2e+02 Score=32.92 Aligned_cols=115 Identities=7% Similarity=0.052 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCC-----hhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 003115 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPR-----PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (846)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~-----~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vg 358 (846)
.++++++.+...- ...||||.=++-+. ...+.+|.+..... ..+ ..++.+.++-+.. .-.-+
T Consensus 92 ~i~~g~~~ll~~Q-~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~------~v~---~~~i~~a~~~L~~---~Q~~d 158 (367)
T 1hzf_A 92 LIQKGYMRIQQFR-KADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV------GGS---PEKLQETSNWLLS---QQQAD 158 (367)
T ss_dssp HHHHHHHHHHTTB-CTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT------CCC---HHHHHHHHHHHGG---GBCTT
T ss_pred HHHHHHHHHHhcc-CCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh------CCC---HHHHHHHHHHHHH---hhccC
Confidence 4566666665433 44788865433222 22333443332211 011 3456666665544 22346
Q ss_pred CcEEEEEcCCCCCCCCCch---------hHHHHHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHHHHhc
Q 003115 359 GGFHRYSVDERWHVPHFEK---------MLYDQGQLANVYLDAFSLTKD-------VFYSYICRDILDYLRRDM 416 (846)
Q Consensus 359 GGF~RYsvD~~W~vPHFEK---------MLyDNA~Ll~~ya~Ay~~t~~-------~~y~~~A~~t~~fl~r~m 416 (846)
|||.. .|.+-|-+. -++-.|..+.++.++.....+ +.+...++++++||.+.+
T Consensus 159 G~~~~-----~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 159 GSFQD-----PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp SCBCC-----SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-----ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 88874 566655432 266678899999888776554 346678889999998864
No 375
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=40.17 E-value=2.7e+02 Score=28.39 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCChhHH-HHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 003115 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (846)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l-~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~ 362 (846)
.+++.++.+.. +-...|||+.-+.=|....+ .+.+.......... ..++. ++.+.++=+.. -.-+-+|+|.
T Consensus 39 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dG~f~ 110 (277)
T 1qqf_A 39 LIKKGYTQQLA-FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 110 (277)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC--CCCHH---HHHHHHHHHHH--hccCCCCCcc
Confidence 35555666653 45668999775554443222 22222221111111 11233 33444443321 0112457776
Q ss_pred EEEcCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhcc
Q 003115 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMI 417 (846)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~~~~y~~~A~~t~~fl~r~m~ 417 (846)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+...
T Consensus 111 ~-----~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 172 (277)
T 1qqf_A 111 E-----DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYL 172 (277)
T ss_dssp C-----SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHT
T ss_pred C-----CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhc
Confidence 3 56666643 12566888999998887653 334567788999999998653
No 376
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=39.03 E-value=21 Score=32.97 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.7
Q ss_pred EEEEeccCChhhhhhh
Q 003115 142 FLSIGYSTCHWCHVME 157 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me 157 (846)
+.-++.++|++|++..
T Consensus 3 i~lY~~~~C~~C~ka~ 18 (132)
T 1z3e_A 3 VTLYTSPSCTSCRKAR 18 (132)
T ss_dssp EEEEECTTCHHHHHHH
T ss_pred EEEEeCCCChHHHHHH
Confidence 3457899999999755
No 377
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=38.96 E-value=36 Score=37.20 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccccC--CCeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 003115 586 ESAASFIRRHLYDEQ--THRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (846)
Q Consensus 586 ~~~a~~l~~~l~d~~--~G~l~~~~~---dg~~---~~~~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~ 657 (846)
.++..|.+.++...+ +|.+-+.+. +|.. +...-.|+=-+.+.||+.+.+..++..|++.|..|++.+.++-.
T Consensus 53 D~Lw~wt~~~l~~~d~~~~L~aW~w~~~~~g~~~v~D~nsAtDGDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~I~~~~v 132 (355)
T 3qxf_A 53 DNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEV 132 (355)
T ss_dssp HHHHHHHHHHHSTTCTTTSCCCSEEEECTTSCEEEEECSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhccCCcccCCceEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 456677777876543 344434432 2321 22333555578999999999999999999999999999988765
Q ss_pred ccC
Q 003115 658 DRE 660 (846)
Q Consensus 658 D~~ 660 (846)
...
T Consensus 133 ~~~ 135 (355)
T 3qxf_A 133 VTV 135 (355)
T ss_dssp EEE
T ss_pred ccC
Confidence 443
No 378
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=37.92 E-value=41 Score=35.85 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=42.2
Q ss_pred EEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCCC-CCCcEEEECCC
Q 003115 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPD 213 (846)
Q Consensus 141 I~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~-G~P~~v~l~pd 213 (846)
.+|.|...||..|..+.. .| .+|++.+.. .+..+.+|.++.+.+.. ++....|.. +.|+.+++++.
T Consensus 248 ~~l~f~~~~~~~~~~~~~-~~--~~vA~~~~~~~~~~f~~id~~~~~~~~~----~~~~~~gi~~~~P~~~i~~~~ 316 (350)
T 1sji_A 248 HIVAFAERSDPDGYEFLE-IL--KQVARDNTDNPDLSIVWIDPDDFPLLVA----YWEKTFKIDLFKPQIGVVNVT 316 (350)
T ss_dssp EEEEECCTTSHHHHHHHH-HH--HHHHHHGGGCSSCCEEEECGGGCHHHHH----HHHHHCCSCTTSCEEEEEESS
T ss_pred EEEEEEcCCCccHHHHHH-HH--HHHHHHhCCCCceEEEEECchhhHHHHH----HHHhhcCCCccCCcEEEEecc
Confidence 345588899988887654 33 347777754 67788888876554321 011112443 68999999983
No 379
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=37.03 E-value=88 Score=34.74 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHHHHHhc----cccC---CCeEEEEe--c-CCCC-CCC--CCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003115 586 ESAASFIRRHL----YDEQ---THRLQHSF--R-NGPS-KAP--GFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQ 649 (846)
Q Consensus 586 ~~~a~~l~~~l----~d~~---~G~l~~~~--~-dg~~-~~~--~~leDyA~~i~aLl~LYe~Tg---d~~yL~~A~~L~ 649 (846)
.++..|.+.++ ..++ +|.+-|.+ . +|.. ... .=.++=-+.+.||+.+.+..| +..|++.|..|+
T Consensus 97 D~L~~wtk~~l~~~~~~~~g~~~~l~aW~~g~~~~g~~~d~n~~sAtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il 176 (405)
T 1h12_A 97 DNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARWGNSGEFNYYNDAITML 176 (405)
T ss_dssp HHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHHCSSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCcccceEEEeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Confidence 46677888888 3333 46676666 2 2322 111 224444689999999999999 789999999999
Q ss_pred HHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHH-HHHhCC-CCchHHHHHHHHHHHHHH
Q 003115 650 NTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAG-SKSDYYRQNAEHSLAVFE 724 (846)
Q Consensus 650 ~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL-~~lt~~-~~~~~y~~~A~~~l~~~~ 724 (846)
+.+.++- +.+|..-+.+... .+ .-||=-. -.++++ +.++++ ...+.|.+.++..++.+.
T Consensus 177 ~~I~~~~--~~~~~~~f~p~~~--~~---------~npSY~~---pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~ 237 (405)
T 1h12_A 177 NTIKNKL--MENQIIRFSPYID--NL---------TDPSYHI---PAFYDYFANNVTNQADKNYWRQVATKSRTLLK 237 (405)
T ss_dssp HHHHHHS--EETTEECSCTTCS--SC---------BCGGGCC---HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCeeEEecCCC--Ce---------eChhhcC---HHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence 9998775 3333221111111 11 2233222 234444 666643 111558888887776653
No 380
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=36.90 E-value=93 Score=34.18 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhccCCCCceee
Q 003115 404 ICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 404 ~A~~t~~fl~r~m~~~~Ggfys 425 (846)
.++++++||++ .+.++|||-.
T Consensus 192 ~v~ka~~fL~s-cQn~DGGfGe 212 (377)
T 1n4q_B 192 DMKKAISYIRR-SMSYDNGLAQ 212 (377)
T ss_dssp CHHHHHHHHHH-TBCTTSSBBS
T ss_pred HHHHHHHHHHH-hcCCCCCCCC
Confidence 47899999998 6678999944
No 381
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=36.31 E-value=81 Score=34.39 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
-+.++||.+|++..++ ++|.+.|.+++.-|.++... +|.+.. +.+.... ..++.---+..
T Consensus 117 l~IA~ALl~A~~~W~~----------------~~Y~~~A~~I~~~i~~~~~~--~g~l~~-~~d~~~~-~~~ln~SY~~~ 176 (350)
T 3ren_A 117 LRIIKALLLANNRWNS----------------FYYKFYAINIANSLLKHAEE--NETLVD-YIDNYGK-GNTTTLCYLDL 176 (350)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHEE--TTEECS-EECSSCB-CSEEEGGGCCH
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHHccc--cCcccC-CCCccCC-CCEeehHhcCH
Confidence 5789999999999987 78999999999999988765 354432 2222111 22222222345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 003115 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (846)
Q Consensus 627 ~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~ 655 (846)
.++-.+++. +..|.+.+..-.+.+.+.
T Consensus 177 ~a~~~f~~~--~~~W~~l~~~g~~lL~~g 203 (350)
T 3ren_A 177 PTMKLLSQV--DKKWEGIYEKSNSIIENG 203 (350)
T ss_dssp HHHHHHHHH--CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhC
Confidence 566666666 477888888777777663
No 382
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=36.22 E-value=2e+02 Score=32.75 Aligned_cols=153 Identities=12% Similarity=0.059 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-------------CCCC
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-------------NGPS 613 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~-------------dg~~ 613 (846)
|..|.++...++.+||.. -| .+.|.++.+.+++++.+...+++..+.|+.-| .|.|
T Consensus 183 a~~L~la~~Yy~~TgD~~---~f--------~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~p 251 (489)
T 2p0v_A 183 CYPIRLAYHYWKTTGDAS---VF--------SDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNP 251 (489)
T ss_dssp HHHHHHHHHHHHHHCCCT---TS--------SHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCch---hh--------HHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCc
Confidence 888999999999999821 12 36898999999999988765532001111101 0111
Q ss_pred -------------C-----CCCCcchHHHHHHHHHHHHHHc---C-CH----HHHHHHHHHHHHHHHHccccC--CCc-c
Q 003115 614 -------------K-----APGFLDDYAFLISGLLDLYEFG---S-GT----KWLVWAIELQNTQDELFLDRE--GGG-Y 664 (846)
Q Consensus 614 -------------~-----~~~~leDyA~~i~aLl~LYe~T---g-d~----~yL~~A~~L~~~~~~~F~D~~--~Gg-y 664 (846)
. ..=+...++++..+|-.+.++. + +. +|.+.|.++-+.+.++.++.+ .|. |
T Consensus 252 v~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~if 331 (489)
T 2p0v_A 252 VKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIY 331 (489)
T ss_dssp CCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred cCCCCceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEE
Confidence 0 1112235577777776666443 3 43 477788888888888887754 342 3
Q ss_pred cccCCCCCcccccccCCCC-CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003115 665 FNTTGEDPSVLLRVKEDHD-GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (846)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D-~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~~~A~~~l~~ 722 (846)
....+..+.. ..+| .-.||=-|+- -|+-+..+ |+.|+...+.++..
T Consensus 332 AyEVDG~G~~-----~~mDDanvpSLLslP-----ylG~~~~d--Dpiy~nTr~~IlS~ 378 (489)
T 2p0v_A 332 AFEVDGFGNQ-----LLMDDANVPSLIALP-----YLGDVKVT--DPIYQNTRKFVWSE 378 (489)
T ss_dssp CSEECSSSCE-----ECCCCSSSSCSTTHH-----HHTSSCTT--CHHHHHHHHHHTST
T ss_pred EEEecCCCCc-----ccCCCCCccHHHHHH-----HhCCCCCC--CHHHHHHHHHHHhh
Confidence 2222211221 1234 3447766532 22322222 47887666655544
No 383
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=35.92 E-value=2.5e+02 Score=34.00 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCC--CCC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGP--SKA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~--dg~--~~~-~~~leDyA~~i~aLl~LYe~Tgd~~yL~ 643 (846)
+.|++...++..+... +|.+.|.+. .+. ..+ ..+.||..+++.++.+.++.|||..+|+
T Consensus 382 e~ar~~il~~~~~Q~~--dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~ 445 (822)
T 3rrs_A 382 ERARERIIDIASTQFA--DGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILD 445 (822)
T ss_dssp HHHHHHHHHHHTTCCT--TSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHHhhcc--cCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHH
Confidence 4566666666665543 577777664 222 111 4578899999999999999999999986
No 384
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=35.77 E-value=2.7e+02 Score=31.67 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=63.6
Q ss_pred CcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccC-CCcccccCC---CCCcc-------------c
Q 003115 618 FLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDRE-GGGYFNTTG---EDPSV-------------L 675 (846)
Q Consensus 618 ~leDyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~-~Ggyf~t~~---~~~~l-------------~ 675 (846)
-+|-.|+.+.++-.+|+.|||. .|.+..+.+++.+.+...++. .|-|.+.-. ..+++ +
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 4667799999999999999965 556677778888877665432 244544211 01111 1
Q ss_pred cc--ccCCCCCCCC-----ChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHhh
Q 003115 676 LR--VKEDHDGAEP-----SGNSVSVINLVRLASIVAGSK-SDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 676 ~R--~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~~~~-~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
++ .++. |+++- -+|..++..|-+++.+...-. +....++++++.+.+..-|.++
T Consensus 258 i~S~fRPS-DDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~ 319 (489)
T 2p0v_A 258 IASAFRPS-DDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKY 319 (489)
T ss_dssp CCCSBCTT-SCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCC-CcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 10 1122 22221 277777788877776653211 2445555665555555555444
No 385
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=35.66 E-value=24 Score=32.18 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=32.0
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~ 216 (846)
..++.++|++|++-. ++|+++ .-+..+|..+.|.-.......++. .|.|.--+++..|..
T Consensus 3 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~el~~~l~~----~~~~~~~l~n~~~~~ 63 (120)
T 3l78_A 3 TLFLSPSCTSCRKAR----------AWLNRHDVVFQEHNIMTSPLSRDELLKILSY----TENGTEDIISTRSKV 63 (120)
T ss_dssp EEEECSSCHHHHHHH----------HHHHHTTCCEEEEETTTSCCCHHHHHHHHHH----CSSTHHHHBCTTCHH
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCcHHHHHHHHhh----cCCCHHHhhcCCcHH
Confidence 457899999999865 345442 222335555444333334333332 245555556665543
No 386
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.06 E-value=15 Score=34.73 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=35.3
Q ss_pred EEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 144 ~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
.++.++|.+|++-. ++|+++ .-+..+|..+.|.-.....+..+. .|||.--+++..|...-
T Consensus 6 iY~~p~C~~crkak----------~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~----~g~p~~~l~n~~~~~yk 67 (141)
T 1s3c_A 6 IYHNPASGTSRNTL----------EMIRNSGTEPTIILYLENPPSRDELVKLIAD----MGISVRALLRKNVEPYE 67 (141)
T ss_dssp EECCTTCHHHHHHH----------HHHHHTTCCCEEECTTTSCCCHHHHHHHHHH----HTSCHHHHBCSSSHHHH
T ss_pred EEECCCChHHHHHH----------HHHHHcCCCEEEEECCCCCccHHHHHHHhcc----cCCCHHHhccCCchhHH
Confidence 47899999999754 456553 222345655444333333333333 38887777777665443
No 387
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=34.73 E-value=3.6e+02 Score=28.04 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCChhHH-HHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 003115 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (846)
Q Consensus 284 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l-~~ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~vgGGF~ 362 (846)
.+++.++.+.. +-...||||.-++=|....+ .+.+.......... ..++. ++.+.++=+.. -.-+-+|+|.
T Consensus 55 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dGsf~ 126 (310)
T 2wy7_A 55 LIKKGYTQQLA-FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 126 (310)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC--CCCHH---HHHHHHHHHHH--hhcCCCCccc
Confidence 45555666653 45668999776554432222 22222221111111 11233 33444443321 0112357776
Q ss_pred EEEcCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 003115 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (846)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~~~~y~~~A~~t~~fl~r~m 416 (846)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+..
T Consensus 127 ~-----~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 187 (310)
T 2wy7_A 127 E-----DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 187 (310)
T ss_dssp C-----SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHG
T ss_pred c-----CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHh
Confidence 3 56666543 22566899999999887653 33456778899999999865
No 388
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=34.63 E-value=6.4e+02 Score=29.80 Aligned_cols=92 Identities=8% Similarity=-0.071 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 003115 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 624 (846)
Q Consensus 545 WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~ 624 (846)
|--..+.||+-++.++++-. ..++|++.|.+..+.-.+....++ |+.+ ..-+.=+.+
T Consensus 261 h~l~~~~aL~~agl~~pe~~------------~~~~w~~~A~~~L~~el~~Qi~~D-G~~~----------E~Sp~Yh~~ 317 (702)
T 4fnv_A 261 ILISQANALATAGTLMPEFK------------NAEKWMNTGYQILSEEVQNQIMSD-GWHK----------EMSLHYHIG 317 (702)
T ss_dssp HHHHHHHHHHHHHHHCTTBT------------THHHHHHHHHHHHHHHHHHSBCTT-SCBT----------TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCc------------cHHHHHHHHHHHHHHHHHhhcCCC-Cccc----------cCCHHHHHH
Confidence 44444779999999987511 126899999998877666655654 4321 222333455
Q ss_pred HHHHHHHH---HHHcCC-----HHHHHHHHHHHHHHHHHccccC
Q 003115 625 LISGLLDL---YEFGSG-----TKWLVWAIELQNTQDELFLDRE 660 (846)
Q Consensus 625 ~i~aLl~L---Ye~Tgd-----~~yL~~A~~L~~~~~~~F~D~~ 660 (846)
++..++.+ .+..|- +.+.+..+++...+. .+..++
T Consensus 318 vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~-~l~~PD 360 (702)
T 4fnv_A 318 IVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVM-YFTYPN 360 (702)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHH-HTSCGG
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHH-HHcCCC
Confidence 55555544 344443 345666666666654 344443
No 389
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=33.98 E-value=33 Score=31.32 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=32.9
Q ss_pred EEEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 142 ~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
+..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++. .|.|.--+++..|.
T Consensus 5 i~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~l~n~~~~ 65 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAK----------AELDDLAWDYDAIDIKKNPPAASLIRNWLEN----SGLELKKFFNTSGQ 65 (120)
T ss_dssp EEEEECSSCHHHHHHH----------HHHHHHTCCEEEEETTTSCCCHHHHHHHHHH----SCCCGGGGBCTTSH
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCceEEEEeccCchhHHHHHHHHHH----cCCCHHHHhCCCCc
Confidence 3447899999999865 355542 223345655544333334343333 36665555565544
No 390
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=33.90 E-value=2.1e+02 Score=37.10 Aligned_cols=239 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEE------EcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHH
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRY------SVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDI 408 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~RY------svD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t 408 (846)
.++.+.+...++.+.. +-+-+|||.-+ .....|. .|..+..+++|... -..-..+..++
T Consensus 979 ~~a~~~i~~g~~~ll~---~q~~dGgf~~f~~~~~~~~~s~wl----------TAyv~~~l~~a~~~--~~v~~~~l~~a 1043 (1451)
T 4acq_A 979 SKAIGYLNTGYQRQLN---YKHYDGSYSTFGERYGRNQGNTWL----------TAFVLKTFAQARAY--IFIDEAHITQA 1043 (1451)
T ss_dssp HHHHHHHHHHHHHHGG---GBCTTSCBCSSTTGGGCCCCCHHH----------HHHHHHHHHHHTTT--SCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hcCCCCCeeeccCCCCCCCCchhH----------HHHHHHHHHHhhhh--cccCHHHHHHH
Q ss_pred HHHHHHhccCCCCceeeeccCCCccccccccccCCceEEecHHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCC
Q 003115 409 LDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEF 488 (846)
Q Consensus 409 ~~fl~r~m~~~~Ggfysa~DADs~~~~~~~~~~EGayY~wt~~Ei~~~L~~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~f 488 (846)
++||.+ .+.++|.|+. .-.--|...
T Consensus 1044 ~~wL~~-~Q~~dG~f~~------------------------------------------------------~g~~~~~~m 1068 (1451)
T 4acq_A 1044 LIWLSQ-RQKDNGCFRS------------------------------------------------------SGSLLNNAI 1068 (1451)
T ss_dssp HHHHHH-TEETTTEECC------------------------------------------------------CCCCSCGGG
T ss_pred HHHHHh-hcccCCcccc------------------------------------------------------cCcccchhh
Q ss_pred CC--cceeeccCCchHHHHHcCCCHH-----HHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchH------HHHHHHHHH
Q 003115 489 KG--KNVLIELNDSSASASKLGMPLE-----KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWN------GLVISSFAR 555 (846)
Q Consensus 489 eg--~nvL~~~~~~~~~a~~~g~~~~-----~l~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WN------glmI~ALa~ 555 (846)
.| .+-+.+..-.-....+.|.... ...+.|+.....| .+ .+..+-++-
T Consensus 1069 ~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~-------------------~~~~~~~~~y~~AllAy 1129 (1451)
T 4acq_A 1069 KGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTA-------------------QEGDHGSHVYTKALLAY 1129 (1451)
T ss_dssp CCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHH-------------------TSSCSSSTHHHHHHHHH
T ss_pred cCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhc-------------------ccccccCChHHHHHHHH
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----------CCCCCCcchHHHH
Q 003115 556 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----------SKAPGFLDDYAFL 625 (846)
Q Consensus 556 A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~----------~~~~~~leDyA~~ 625 (846)
|....|+. +.+..+.+-|.+.... ++|..+|...... .......|--|++
T Consensus 1130 Alal~g~~-------------------~~~~~~l~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~Taya 1189 (1451)
T 4acq_A 1130 AFALAGNQ-------------------DKRKEVLKSLNEEAVK-KDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYV 1189 (1451)
T ss_dssp HHHHHTCH-------------------HHHHHHHHHHHHHCCB-CSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHH
T ss_pred HHHhcCCh-------------------hHHHHHHHHHHHHhhc-cCCceecCCCCCCccccccccccCCchHHHHHHHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcccccCCCCCcccccccCCCCCCCCChHHHHHHHHHHHHHHhC
Q 003115 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 705 (846)
Q Consensus 626 i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~ 705 (846)
+.+++.+-.+ ....-++.|..+.+++.+.-.. +|||.+|. .+.+++.+|.+.+..+.
T Consensus 1190 LLall~~~~~-~~~~d~~~a~~iv~WL~~qr~~--~Ggf~STQ--------------------dTv~aL~ALa~Y~~~~~ 1246 (1451)
T 4acq_A 1190 LLAYLTAQPA-PTSEDLTSATNIVKWITKQQNA--QGGFSSTQ--------------------DTVVALHALSKYGAATF 1246 (1451)
T ss_dssp HHHHHCCSSC-CCHHHHHHHHTTHHHHTTCCCT--TSCCSSHH--------------------HHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccc-ccccchhhHHHHHHHHHHcCCC--CCCcccHH--------------------HHHHHHHHHHHHHHhcC
No 391
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=33.61 E-value=3.1e+02 Score=33.06 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCC--CCC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003115 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGP--SKA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (846)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~--dg~--~~~-~~~leDyA~~i~aLl~LYe~Tgd~~yL~ 643 (846)
+.|++...++..+... +|.+.|.+. .+. ..+ ..+.||..+++.++.+.++.|||..+|+
T Consensus 375 ~~~r~~il~~~~~Q~~--dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~ 438 (811)
T 3qde_A 375 ERARERLLDLAATQLE--DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILK 438 (811)
T ss_dssp HHHHHHHHHHHTTBCT--TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhccc--CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHH
Confidence 4566666666665543 577777764 222 112 3578888999999999999999999985
No 392
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=32.74 E-value=70 Score=35.63 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=43.6
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHH-
Q 003115 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF- 526 (846)
Q Consensus 452 Ei~~~L~----~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~- 526 (846)
++..+|. .+..++.-.|++..+. | .+..++|+.+|++.+.+.+.+..++++|.
T Consensus 353 ~L~~aL~~L~~rer~Vl~lr~~L~~~e---------------~-------~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 353 ELEKALSKLSEREAMVLKLRKGLIDGR---------------E-------HTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHTTCC---------------------------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 3455554 3456777788885321 1 23568999999999999999999999998
Q ss_pred h-hhcCCCCCCC
Q 003115 527 D-VRSKRPRPHL 537 (846)
Q Consensus 527 ~-~R~~R~~P~~ 537 (846)
. .|.++.+.++
T Consensus 411 ~~~~~~~l~~~l 422 (423)
T 2a6h_F 411 HESRTRKLRDFL 422 (423)
T ss_dssp HHHHTTSSSSCC
T ss_pred hhhhhHHHHHhh
Confidence 3 3555555554
No 393
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=32.61 E-value=69 Score=34.98 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
-.++.||.+|++.-++.. ..+|.+.|+++++.|.++...+ |...-...+... ...+++. ++.+
T Consensus 123 l~IA~ALl~A~~~W~~~g-------------~~~Y~~~A~~i~~~i~~~~~~~--~~~~l~pg~~~~-~~~~~np-SY~~ 185 (363)
T 1kwf_A 123 EDIALALIFADKLWGSSG-------------AINYGQEARTLINNLYNHCVEH--GSYVLKPGDRWG-GSSVTNP-SYFA 185 (363)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHHHHHHBCT--TTCCBCSBSSSC-BTTBBCG-GGCC
T ss_pred HHHHHHHHHHHHHhCCCc-------------chhHHHHHHHHHHHHHHHhccC--CCeEEeccccCC-CCCEecc-hhcC
Confidence 578999999999998610 0269999999999999887764 221111111000 0111111 2223
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 003115 627 -SGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 627 -~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
..+-.+++.+++..|.+.+....+.+.+..
T Consensus 186 p~~~~~fa~~~~~~~W~~~~~~~~~~l~~~~ 216 (363)
T 1kwf_A 186 PAWYKVYAQYTGDTRWNQVADKCYQIVEEVK 216 (363)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHh
Confidence 333445567788899998888877776543
No 394
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=32.59 E-value=46 Score=38.29 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.5
Q ss_pred cchHHHHHHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCcccccC
Q 003115 619 LDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (846)
Q Consensus 619 leDyA~~i~aL---l~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (846)
.|-+|++..++ .++++..|+. +|.+.|.++.+.+.+.|||++.|.||+-.
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~ 361 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYD 361 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEe
Confidence 34456555444 5566677875 68999999999999999999888887643
No 395
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=32.30 E-value=1.1e+02 Score=34.88 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHh---ccccCCCeEEEEec---C-CCCCCCCCcchHHHHHHHHHHH--------HHHcCCHHHHH
Q 003115 579 KEYMEVAESAASFIRRH---LYDEQTHRLQHSFR---N-GPSKAPGFLDDYAFLISGLLDL--------YEFGSGTKWLV 643 (846)
Q Consensus 579 ~~yLe~A~~~a~~l~~~---l~d~~~G~l~~~~~---d-g~~~~~~~leDyA~~i~aLl~L--------Ye~Tgd~~yL~ 643 (846)
..|.+.|.++.+.|.++ +|+++.|.|..++. + |... + |-+.++..+... .---.|++.+.
T Consensus 244 ~~w~~~ad~i~~~I~~~~~~~w~~~~~~f~~~~~~~~~~~~~~----l-Das~Ll~~~~~f~~~~~~~~~~~p~Dpr~l~ 318 (492)
T 2fba_A 244 NTLSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQG----L-DSATYIGPLLTHDIGESSSTPFDVDNEYVLQ 318 (492)
T ss_dssp HHHHHHHHHHHHHHHSTTTCCEETTTTEECSSHHHHHTTSCCS----C-CTHHHHHHHHHSCTTSCCCCSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEeccccccCCCCc----c-cHHHHHHHHhccccccccCCccCCCCHHHHH
Confidence 57889999999999988 99976666655441 1 2111 2 224444333221 01225778888
Q ss_pred HHHHHHHHHHHH
Q 003115 644 WAIELQNTQDEL 655 (846)
Q Consensus 644 ~A~~L~~~~~~~ 655 (846)
..+.+.+.+...
T Consensus 319 Tl~ai~~~L~~~ 330 (492)
T 2fba_A 319 SYYLLLEDNKDR 330 (492)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 777777766543
No 396
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=31.96 E-value=49 Score=34.21 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003115 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (846)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~ 413 (846)
..++.+++....+.+.. +-+-+|||.-|..+ +--.+..|..+.+++.|-....- -.++.+++++||.
T Consensus 33 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~v--~~~~i~~a~~~L~ 99 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLA---FKQPISAYAAFNNR--------PPSTWLTAYVSRVFSLAANLIAI--DSQVLCGAVKWLI 99 (277)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCccccCCC--------CccHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHH
Confidence 35778888888888876 56778999643211 12356789999999998765322 2467889999999
Q ss_pred HhccCCCCceee
Q 003115 414 RDMIGPGGEIFS 425 (846)
Q Consensus 414 r~m~~~~Ggfys 425 (846)
++.+.++|.|+.
T Consensus 100 ~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 100 LEKQKPDGVFQE 111 (277)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhccCCCCCccC
Confidence 646678898864
No 397
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=31.44 E-value=85 Score=36.75 Aligned_cols=95 Identities=12% Similarity=-0.038 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---------CC
Q 003115 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---------AP 616 (846)
Q Consensus 546 NglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~---------~~ 616 (846)
.++++.||..++... + -...+++.+||.+...+. .|.+-...+++.+. ..
T Consensus 314 ta~~l~AL~~~G~~~-~-------------------~~~~~ka~~~L~~~q~~~-~g~~~~~~~~~s~GgW~f~~~~~~~ 372 (631)
T 2sqc_A 314 TGLAVLALRAAGLPA-D-------------------HDRLVKAGEWLLDRQITV-PGDWAVKRPNLKPGGFAFQFDNVYY 372 (631)
T ss_dssp HHHHHHHHHHTTCCT-T-------------------CHHHHHHHHHHHHTCCCS-CCGGGGTCTTSCCCCBCSSSSCTTC
T ss_pred HHHHHHHHHHcCCCC-C-------------------CHHHHHHHHHHHHhcCCC-CCChhhhcCCCCCCCCccccCCCCC
Confidence 367788887775311 1 135667778888776542 23221112222221 12
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccCCCcc
Q 003115 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 664 (846)
Q Consensus 617 ~~leDyA~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (846)
+..+|-|+++.+|+.+.. ..+..+.+...+..+.+...- .+ +|+|
T Consensus 373 p~v~dTA~al~AL~~~~~-~~~~~~~~~l~~a~~wLls~Q-~~-dGgf 417 (631)
T 2sqc_A 373 PDVCDTAVVVWALNTLRL-PDERRRRDAMTKGFRWIVGMQ-SS-NGGW 417 (631)
T ss_dssp CBHHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHTC-CT-TSCB
T ss_pred CchHHHHHHHHHHHHcCC-CccchhHHHHHHHHHHHHhhc-CC-CCCC
Confidence 446788999999888764 333456666677777776643 33 4555
No 398
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.06 E-value=1.3e+02 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=26.2
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|++.+.+...+..++++|..
T Consensus 41 s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 41 TLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999976
No 399
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=30.99 E-value=64 Score=35.87 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~~i 626 (846)
-.++.||..|++.-++. | ...|++.|+++++.|.++- +.++.+. +..+.. . .-+=++.+
T Consensus 147 l~IA~ALl~A~~~Wg~~-----------g--~~~Y~~~A~~il~~I~~~~--~~~~~~~--f~p~~~-~---~~npSY~~ 205 (405)
T 1h12_A 147 EYFAFALLNASARWGNS-----------G--EFNYYNDAITMLNTIKNKL--MENQIIR--FSPYID-N---LTDPSYHI 205 (405)
T ss_dssp HHHHHHHHHHHHHHCSS-----------S--SCCHHHHHHHHHHHHHHHS--EETTEEC--SCTTCS-S---CBCGGGCC
T ss_pred HHHHHHHHHHHHHcCCC-----------C--chhHHHHHHHHHHHHHHhC--CCCCeeE--EecCCC-C---eeChhhcC
Confidence 57889999999999841 1 1579999999999998877 4444332 122221 1 11223344
Q ss_pred HHHHHH-HHHcCC----HHHHHHHHHHHHHHHHHc
Q 003115 627 SGLLDL-YEFGSG----TKWLVWAIELQNTQDELF 656 (846)
Q Consensus 627 ~aLl~L-Ye~Tgd----~~yL~~A~~L~~~~~~~F 656 (846)
-+++++ ++.+++ +.|.+.+....+.+.+..
T Consensus 206 pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~~~ 240 (405)
T 1h12_A 206 PAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (405)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc
Confidence 577777 566766 779998888877776554
No 400
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=30.62 E-value=22 Score=32.48 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=32.6
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~ 215 (846)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++.+ |+|.--+++..|.
T Consensus 7 ~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 66 (120)
T 3gkx_A 7 LFLQYPACSTCQKAK----------KWLIENNIEYTNRLIVDDNPTVEELKAWIPLS----GLPVKKFFNTSGV 66 (120)
T ss_dssp EEEECTTCHHHHHHH----------HHHHHTTCCCEEEETTTTCCCHHHHHHHHHHH----TSCGGGGBCTTSH
T ss_pred EEEECCCChHHHHHH----------HHHHHcCCceEEEecccCcCCHHHHHHHHHHc----CCCHHHeEeCCCc
Confidence 457899999999865 355543 2223355554444333333443333 6665555565544
No 401
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=30.02 E-value=3e+02 Score=32.77 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=33.9
Q ss_pred HHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003115 546 NGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (846)
Q Consensus 546 NglmI~A---La~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~ 607 (846)
|+++..| +++.++.+|+.+. .++|.+.|.++.+.+.+++|+++++.|...
T Consensus 505 ~a~~y~al~~~a~la~~lG~~~~------------a~~~~~~A~~lk~~~~~~~w~~~~~~f~~~ 557 (807)
T 1v7w_A 505 SFLHFWALQEFIDLAKFLGKDQD------------VNTYTEMAANVREACETHLWDDEGGWYIRG 557 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHHHHhccCCCCCeeeee
Confidence 5666554 4555666665311 257999999999999999999765544333
No 402
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=29.10 E-value=1.6e+02 Score=33.47 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=65.9
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhh----ccc-CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 003115 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESA----MFN-FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 608 (846)
Q Consensus 534 ~P~~DdKilt~WNglmI~ALa~A~~v~~d~~~~~----~~~-~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~ 608 (846)
+|-+|-. |+.|.++....+.+.+..... .|. .++.. ....|-..-+..++|+.++...|+.| ++..
T Consensus 141 ~~Q~D~~------g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~v~~~w~~pd~d-lWEe- 211 (492)
T 2fba_A 141 RPQNDGP------ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSS-TEDIYKNIIKPDLEYVIGYWDSTGFD-LWEE- 211 (492)
T ss_dssp CCBTTHH------HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSS-HHHHHHHTHHHHHHHHHHHTTSCEEC-TTSC-
T ss_pred Cccccch------hHHHHHHHHHHHHhhccccchhhhhhhccccccc-cHHHHHHHHHHHHHHHHHhcCCCCCC-CcCc-
Confidence 4677766 998888888776655421000 000 00000 01223478889999998775443222 2111
Q ss_pred cCCCCCCCCCcchHHHHHHHH---HHHHHHcCC----HHHHHHHHHHHHHHHHH---ccccCCCcc
Q 003115 609 RNGPSKAPGFLDDYAFLISGL---LDLYEFGSG----TKWLVWAIELQNTQDEL---FLDREGGGY 664 (846)
Q Consensus 609 ~dg~~~~~~~leDyA~~i~aL---l~LYe~Tgd----~~yL~~A~~L~~~~~~~---F~D~~~Ggy 664 (846)
+. ..+..--+.+..|| +++.+..|+ ..|.+.|.++.+.+.++ ||+++.|.|
T Consensus 212 r~-----g~~~~T~~~~~~AL~~aa~lA~~~g~~~~a~~w~~~ad~i~~~I~~~~~~~w~~~~~~f 272 (492)
T 2fba_A 212 NQ-----GRHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHI 272 (492)
T ss_dssp CE-----ECCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSTTTCCEETTTTEE
T ss_pred cC-----CCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Confidence 11 12333345555666 445666676 46888888899999888 998754433
No 403
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=28.69 E-value=31 Score=34.90 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCCCcEEEECCCCceecc------ccccCCCCCCCcccHHHHHHHHHHH
Q 003115 200 GGGGWPLSVFLSPDLKPLMG------GTYFPPEDKYGRPGFKTILRKVKDA 244 (846)
Q Consensus 200 g~~G~P~~v~l~pdg~~~~~------~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (846)
|+.|.|+++|.+++|+.+.| .+|.|.+ .|.++|+.+...
T Consensus 168 GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~~e------~l~~~I~~~l~~ 212 (226)
T 3f4s_A 168 GITAVPIFFIKLNDDKSYIEHNKVKHGGYKELK------YFTNVIDKLYGK 212 (226)
T ss_dssp CCCSSCEEEEEECCTTCCCCGGGGEEESCCCHH------HHHHHHHHHHHH
T ss_pred CCCcCCEEEEEcCCCEEeeCCCCcccccccCHH------HHHHHHHHHHhc
No 404
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=28.58 E-value=7.4e+02 Score=28.66 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=54.9
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH
Q 003115 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (846)
Q Consensus 543 t~WNglmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy 622 (846)
+.-.++.+.||.+|.++...- |...+.|.+.|.++.++| +++|+++ |.|...+.++.. ...-+|-
T Consensus 186 ~~T~~~~~~aL~~aa~lA~~~-----------g~~~~~w~~~ad~i~~~i-~~~w~~~-g~f~~~~~~~~~-~~~~lDa- 250 (599)
T 2vn4_A 186 FFTVANQHRALVEGATLAATL-----------GQSGSAYSSVAPQVLCFL-QRFWVSS-GGYVDSNINTNE-GRTGKDV- 250 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------TCCCHHHHHHHHHHHHHH-GGGEETT-TTEECSEESSCC-CCCCCBT-
T ss_pred hHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHH-HhhcCCC-CCEEEEecCccC-CCCCcCH-
Confidence 334467777887776654320 111268999999999999 8999987 777766532210 0112222
Q ss_pred HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHH
Q 003115 623 AFLISGLLDLYEF----------GSGTKWLVWAIELQNTQD 653 (846)
Q Consensus 623 A~~i~aLl~LYe~----------Tgd~~yL~~A~~L~~~~~ 653 (846)
+.++..+. .|.. -.|++.+...+.+.+.+.
T Consensus 251 s~LL~~~~-~f~~~~~~~~~~~~p~dpr~l~Tl~ai~~~L~ 290 (599)
T 2vn4_A 251 NSVLTSIH-TFDPNLGCDAGTFQPCSDKALSNLKVVVDSFR 290 (599)
T ss_dssp HHHHHHHH-SCCGGGTTCTTTTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhhhc-cCCccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 33332221 2221 157788877777766665
No 405
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.36 E-value=76 Score=37.84 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC
Q 003115 546 NGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG 611 (846)
Q Consensus 546 NglmI~---ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg 611 (846)
|+++.. .+++.++++|+.+. ..+|.+.|.++.+.+.+++|+++.|.+...+.+|
T Consensus 457 ~a~~y~al~~~a~lA~~lG~~~~------------A~~y~~~A~~lk~a~~~~~wd~~~G~y~~~~~~G 513 (739)
T 3cih_A 457 QVLFCRSLETMALCADLVGDKDG------------QQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDG 513 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHHEETTTTEECSEEETT
T ss_pred HHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeeEeecCCC
Confidence 555544 55666777776321 2579999999999999999998777766544455
No 406
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=28.11 E-value=61 Score=34.16 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r 414 (846)
.++.+++....+.+.. +-+-+|||.-|..+ +--.+..|..+.+++.|-....- -.++.+++++||.+
T Consensus 50 ~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~v--~~~~i~~a~~~L~~ 116 (310)
T 2wy7_A 50 QGALELIKKGYTQQLA---FRQPSSAFAAFVKR--------APSTWLTAYVVKVFSLAVNLIAI--DSQVLCGAVKWLIL 116 (310)
T ss_dssp HHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hcCCCCCcccCCCC--------CccHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence 5677888888888875 56778999643211 12356789999999998765322 24678899999996
Q ss_pred hccCCCCceee
Q 003115 415 DMIGPGGEIFS 425 (846)
Q Consensus 415 ~m~~~~Ggfys 425 (846)
+.+.++|.|+.
T Consensus 117 ~~Q~~dGsf~~ 127 (310)
T 2wy7_A 117 EKQKPDGVFQE 127 (310)
T ss_dssp HHBCTTSCBCC
T ss_pred hhcCCCCcccc
Confidence 46678898864
No 407
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=26.87 E-value=1.7e+02 Score=32.62 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-HhccccCCCeEEEEe--cCCCCCCCCC-----
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-RHLYDEQTHRLQHSF--RNGPSKAPGF----- 618 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~-~~l~d~~~G~l~~~~--~dg~~~~~~~----- 618 (846)
|+.+.|++-|..- | + ....+.++...++.++|. +.+ +.-+|-|+|-+ +.|++.....
T Consensus 58 Gf~L~a~~va~e~-G-----------~--I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~v 122 (424)
T 4gl3_A 58 GFGVMAIIVGIER-G-----------F--VTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDGA 122 (424)
T ss_dssp HHHHHHHHHHHHT-T-----------S--SCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCSE
T ss_pred HHHHHHHHHHHHc-C-----------C--CCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCcc
Confidence 7778888777651 1 0 012678899999999985 334 32356677654 2344433322
Q ss_pred -cchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHH
Q 003115 619 -LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQD 653 (846)
Q Consensus 619 -leDyA~~i~aLl~LYe~Tgd-----~~yL~~A~~L~~~~~ 653 (846)
+=|-++++.+||.+-+...+ .+-.++|.+|++.++
T Consensus 123 StVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~~L~~~~d 163 (424)
T 4gl3_A 123 DIVESAFMFEGLLAAHQYFTKDNPTENRIRGIINNLWRQAE 163 (424)
T ss_dssp EHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Confidence 33889999999999998766 355566777766654
No 408
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=26.70 E-value=37 Score=31.02 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=35.1
Q ss_pred EEEeccCChhhhhhhhcccCCHHHHHHHhcC-eEEEEEcCCCCccHHHHHHHHHHHhcCCCCC-CcEEEECCCCcee
Q 003115 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGW-PLSVFLSPDLKPL 217 (846)
Q Consensus 143 l~~g~~wC~wC~~me~etf~d~eVa~~ln~~-FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~-P~~v~l~pdg~~~ 217 (846)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++. .|| |.--+++..|...
T Consensus 8 ~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~~l~n~~~~~~ 70 (121)
T 3rdw_A 8 TIYHNPRCSKSRETL----------ALVEQQGITPQVVLYLETPPSVDKLKELLQQ----LGFSDARQLMRTKEDLY 70 (121)
T ss_dssp EEECCTTCHHHHHHH----------HHHHTTTCCCEEECTTTSCCCHHHHHHHHHH----TTCSSGGGGBCTTSHHH
T ss_pred EEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCcHHHHHHHHHh----cCCcCHHHHhcCCChhh
Confidence 447899999999855 456543 222345665554433334344433 377 7655666665543
No 409
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=25.96 E-value=4.7e+02 Score=29.47 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCCCcccccCCC---CCc--------------ccc
Q 003115 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---DPS--------------VLL 676 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~~--------------l~~ 676 (846)
+|--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.-.....+.|.+.-.. .++ ++-
T Consensus 162 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 241 (463)
T 3p2c_A 162 IDSLCYPLRLAYHYWKTTGDASIFNEEWIQAITNVLKTFKEQQRKDGVGPYKFQRKTERALDTVSNDGLGAPVKPVGLIV 241 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTTCSSSSCSCCCBCCBSCGGGSCHHHHTCSCCCCSSCCB
T ss_pred hhhhhHHHHHHHHHHHhhCChhhhcHHHHHHHHHHHHHHHHHhccCCCCCceEeecCCCCCcccCCCCcCCCcCCCCcee
Confidence 345688888888999999864 7787888888877765422112345443110 011 111
Q ss_pred cccCCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhh
Q 003115 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~~~-~~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
-..-..|+++- .+|..++..|-+++.+...- ++....++++++-+.+..-|.++
T Consensus 242 S~FRPSDDa~~~~~~iPsN~~a~v~L~~aaei~~~l~~d~~la~~~~~lA~eIr~gI~k~ 301 (463)
T 3p2c_A 242 SSFRPSDDATTLQFLVPSNFFAVSSLRKAAEILEKVNKKTALSKECKDLAQEVETALKKY 301 (463)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 11223455552 47888888888887776311 13455566666656665555554
No 410
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=25.75 E-value=1e+02 Score=34.14 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC-CCCCCcchHHH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS-KAPGFLDDYAF 624 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~-~~~~~leDyA~ 624 (846)
-.++.||..|++.-++. +| ..+.|.+.|+++++.|.++-.....|.++. .... -. ......-+=++
T Consensus 131 l~IA~ALl~A~~~Wg~~----------~g-~~~~Y~~~A~~il~~i~~~~~~~~~~~~l~-p~~~~~~f~~~~~~~npSY 198 (396)
T 1wu4_A 131 EYFALALFFASHRWGDG----------DE-QPFNYSEQARKLLHTCVHNGEGGPGHPMWN-RDNKLIKFIPEVEFSDPSY 198 (396)
T ss_dssp HHHHHHHHHHHHHHCCC----------SS-TTCCHHHHHHHHHHHHHHTTSSSSCCCSBC-TTTCCBCSSTTCSEECGGG
T ss_pred HHHHHHHHHHHHHhCCC----------CC-CcHHHHHHHHHHHHHHHHhhccCCCcceec-CCCceeeecCCCCeeChhh
Confidence 57889999999999841 01 015799999999999988765421111110 0000 00 00011122234
Q ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHc
Q 003115 625 LISGLLDLYE----FGSGTKWLVWAIELQNTQDELF 656 (846)
Q Consensus 625 ~i~aLl~LYe----~Tgd~~yL~~A~~L~~~~~~~F 656 (846)
.+-++.+++. .++++.|.+.+....+.+.+..
T Consensus 199 ~~pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~~~ 234 (396)
T 1wu4_A 199 HLPHFYELFSLWANEEDRVFWKEAAEASREYLKIAC 234 (396)
T ss_dssp CCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHhcccccChhHHHHHHHHHHHHHhcc
Confidence 4557788755 5577789999998888876654
No 411
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=25.60 E-value=1.8e+02 Score=31.12 Aligned_cols=71 Identities=11% Similarity=-0.096 Sum_probs=47.6
Q ss_pred CCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhc--CeEEEEEcCCCCccHHHHHHHHHHHhcCC-CCCCcEEEECCCC
Q 003115 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGG-GGWPLSVFLSPDL 214 (846)
Q Consensus 138 ~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~--~FV~vkvD~ee~p~~~~~y~~~~~~~~g~-~G~P~~v~l~pdg 214 (846)
.++.+|.|...+|..|..+.+ .| .+||+.... .+..+.+|.++.+.....+.+.. |. .++|..+++++..
T Consensus 247 ~~~~~~~f~~~~~~~~~~~~~-~l--~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~f----gl~~~~P~~~i~~~~~ 319 (367)
T 3us3_A 247 DGIHIVAFAEEADPDGYEFLE-IL--KSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTF----DIDLSAPQIGVVNVTD 319 (367)
T ss_dssp TTEEEEEECCTTSHHHHHHHH-HH--HHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHH----TCCTTSCEEEEEETTT
T ss_pred CCcEEEEEEcCCChhHHHHHH-HH--HHHHHHcCCCCceEEEEECCccchhHHHHHHHhc----CCCCCCCeEEEEeccc
Confidence 456666788888888887765 23 467777765 58888899887765432211111 43 3899999999864
Q ss_pred c
Q 003115 215 K 215 (846)
Q Consensus 215 ~ 215 (846)
.
T Consensus 320 ~ 320 (367)
T 3us3_A 320 A 320 (367)
T ss_dssp C
T ss_pred c
Confidence 3
No 412
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.33 E-value=1.6e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=26.0
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|+++..+...+..++++|..
T Consensus 40 s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 40 TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999964
No 413
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=25.03 E-value=75 Score=38.22 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHccccCCCccccc
Q 003115 625 LISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (846)
Q Consensus 625 ~i~aLl~LYe~Tgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (846)
+...+.++.+..|++ +|.+.|.++.+.+.++|||++.|.||+.
T Consensus 561 al~~lA~lA~~LG~~e~A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 561 DNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 344555677777875 6889999999999999999988888764
No 414
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=24.74 E-value=84 Score=30.68 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=26.0
Q ss_pred cCCCEEEEE-eccCChhhhhhhhcccCCHHHHHH---HhcC-eEEEEEc
Q 003115 137 RDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKL---LNDW-FVSIKVD 180 (846)
Q Consensus 137 e~KpI~l~~-g~~wC~wC~~me~etf~d~eVa~~---ln~~-FV~vkvD 180 (846)
.||+|+|.| =.+||+.|...|-..|.+ ...++ .+-. .+.|-+|
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~-~~~~f~~~~g~~~V~gvS~D 89 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPGYEE-EYDYFIKENNFDDIYCITNN 89 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHHHHH-THHHHHTTSCCSEEEEEESS
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHH-HHHHHHHhCCCcEEEEEeCC
Confidence 477877765 678999999555555644 23334 2322 5555655
No 415
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=24.28 E-value=1.2e+02 Score=32.85 Aligned_cols=77 Identities=6% Similarity=0.053 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003115 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (846)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r 414 (846)
+++.+.+...++.+.. +-+-+|||.-|-.+ .--.+..|..+.++++|......+ ..+.+++++||.+
T Consensus 87 ~~~~~~i~~g~~~ll~---~Q~~dGgf~~~~~~--------~~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQ---FRKADGSYAAWLSR--------DSSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCeeccCCC--------CCcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Confidence 4566777777777764 33468999533221 112467899999999987664322 4678999999988
Q ss_pred hccCCCCceee
Q 003115 415 DMIGPGGEIFS 425 (846)
Q Consensus 415 ~m~~~~Ggfys 425 (846)
.+.++|+|+.
T Consensus 154 -~Q~~dG~~~~ 163 (367)
T 1hzf_A 154 -QQQADGSFQD 163 (367)
T ss_dssp -GBCTTSCBCC
T ss_pred -hhccCCCccc
Confidence 4678899875
No 416
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=24.10 E-value=2.3e+02 Score=32.46 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=71.4
Q ss_pred CCCCchhhhchHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe---
Q 003115 535 PHLDDKVIVSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--- 608 (846)
Q Consensus 535 P~~DdKilt~WNglmI~A---La~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G~l~~~~--- 608 (846)
|...|----.|=||-.|. +++.|-++|| ++....-.+-..|++.+..-..+|.+..-.
T Consensus 401 PVYhDPpSN~WfG~QaWsmeRvAeyYY~tGd----------------~~Ak~ildKWv~W~~~~~~~~~~G~f~iPs~L~ 464 (629)
T 1g9g_A 401 PVYADPGSNTWFGMQVWSMQRVAELYYKTGD----------------ARAKKLLDKWAKWINGEIKFNADGTFQIPSTID 464 (629)
T ss_dssp CSCBTTBTTSBTHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEE
T ss_pred CccCCCCCCCccccchhhHHHHHHHHHhccc----------------HHHHHHHHHHHHHHHhceEECCCCCEecCCccc
Confidence 433333334577877775 4556668888 566777778888888775433345443210
Q ss_pred cCCCCCCC-----------------CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccccC
Q 003115 609 RNGPSKAP-----------------GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 660 (846)
Q Consensus 609 ~dg~~~~~-----------------~~leDy---A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~~F~D~~ 660 (846)
=.|+|+.. ..-.|- +.++.+|+-....+||....+.|++|++.+..++.|..
T Consensus 465 WsGqPdtW~~~~s~~gN~~lhv~V~~~g~DvGva~s~A~tL~yYAa~sgd~~ak~~Ak~LLD~~W~~~~D~~ 536 (629)
T 1g9g_A 465 WEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536 (629)
T ss_dssp EESCCCCCCTTTCCCCCTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETT
T ss_pred ccCCCCccccCCCCCCCCCeEEEEeecCcchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 12444211 111132 56788888888899999999999999999998887754
No 417
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=23.98 E-value=3.7e+02 Score=30.74 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCCCceee
Q 003115 403 YICRDILDYLRRDMIGPGGEIFS 425 (846)
Q Consensus 403 ~~A~~t~~fl~r~m~~~~Ggfys 425 (846)
..++++++||++ .+..+|||-.
T Consensus 215 ~~v~kav~fI~s-cQn~DGGfGe 236 (520)
T 3q7a_B 215 ELLHNVDKFVSA-CQTYEGGFAC 236 (520)
T ss_dssp HHHTTHHHHHHT-TBCTTSSBCS
T ss_pred HHHHHHHHHHHH-hcCCCCCccC
Confidence 357889999997 6678999954
No 418
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=23.72 E-value=1.9e+02 Score=26.30 Aligned_cols=66 Identities=6% Similarity=-0.209 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCEEEEEeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003115 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (846)
Q Consensus 128 ~eAl~~Ak~e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~ 207 (846)
.+.++...+.+++++|-|..+||..|.. .| -++|+.+ +++....++- +++.+.| +.. .|+.
T Consensus 29 ~~e~e~fi~~~~v~VVGfF~~~~~~~~~----~F--~~~A~~~-~d~~F~~t~~---~~v~~~~--------~v~-~~~v 89 (124)
T 2l4c_A 29 VPAAMEFIAATEVAVIGFFQDLEIPAVP----IL--HSMVQKF-PGVSFGISTD---SEVLTHY--------NIT-GNTI 89 (124)
T ss_dssp HHHHHHHHHTSSEEEEEECSCTTSTHHH----HH--HHHHHHC-TTSEEEEECC---HHHHHHT--------TCC-SSCE
T ss_pred HHHHHHHHhcCCCEEEEEECCCCChhHH----HH--HHHHHhC-CCceEEEECh---HHHHHHc--------CCC-CCeE
Confidence 4456666778899999999999999954 23 2456667 5666555543 5665555 444 6888
Q ss_pred EEECC
Q 003115 208 VFLSP 212 (846)
Q Consensus 208 v~l~p 212 (846)
+++.+
T Consensus 90 vlfkk 94 (124)
T 2l4c_A 90 CLFRL 94 (124)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88876
No 419
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=23.62 E-value=1e+02 Score=33.71 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEEecCCCCC---CCCCcchH
Q 003115 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSFRNGPSK---APGFLDDY 622 (846)
Q Consensus 547 glmI~ALa~A~~v~~d~~~~~~~~~~~~~~~~~~yLe~A~~~a~~l~~~l~d~~~G-~l~~~~~dg~~~---~~~~leDy 622 (846)
-.++.||.+|++.-++ +.|.+.|+++++.|.++...+..| +.... -|... .....-+=
T Consensus 98 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~I~~~~v~~~~g~~~~Ll--pG~~gF~~~~~~~~nP 159 (355)
T 3qxf_A 98 VWMAWSLLEAGRLWKE----------------QRYTDIGSALLKRIAREEVVTVPGLGSMLL--PGKVGFAEDNSWRFNP 159 (355)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHEEEETTTEEEEC--SSSSSSEETTEEEECT
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccccCCCCceeec--CcccCccCCCCCeech
Confidence 6788999999999987 789999999999998876554323 22211 11100 00111122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003115 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (846)
Q Consensus 623 A~~i~aLl~LYe~Tgd~~yL~~A~~L~~~~~~ 654 (846)
++++-++++++... +..|.+.+..-.+.+.+
T Consensus 160 SY~~p~~~~~fa~~-~~~W~~l~~~~~~lL~~ 190 (355)
T 3qxf_A 160 SYLPPTLAQYFTRF-GAPWTTLRETNQRLLLE 190 (355)
T ss_dssp TSSCHHHHHHHGGG-CTTHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 33455677766666 77899888888877765
No 420
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=23.25 E-value=77 Score=35.60 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003115 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 526 (846)
Q Consensus 452 Ei~~~L~----~~~~~~~~~f~i~~~Gn~e~~~~~d~~g~feg~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~~L~ 526 (846)
+|..+|. .+..++.-.|++..+. | .+..++|+.+|++.+.+.+.+..++++|.
T Consensus 368 ~L~~aL~~L~ereR~VI~LRygL~~~e---------------~-------~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 368 ELEKALSKLSEREAMVLKLRKGLIDGR---------------E-------HTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3445554 3456777788885321 1 24578999999999999999999999997
No 421
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=23.22 E-value=3.6e+02 Score=30.08 Aligned_cols=112 Identities=11% Similarity=0.069 Sum_probs=65.2
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCCCcccccCCC---CC--------------cccc
Q 003115 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---DP--------------SVLL 676 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~--------------~l~~ 676 (846)
+|--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.-.....+.|.+.-.. .+ .++-
T Consensus 134 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 213 (427)
T 3qt9_A 134 IDSLCYPVRLIHKYWKESGDETFFNYDIKKAFNMIIDLWRVEQYHREKSDYSFQRLNCSVTDTLSHEGLGTPVTYTGMTW 213 (427)
T ss_dssp THHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHGGGHHHHCCCCCBCSSSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCccccCCCCCCCcCCCCcee
Confidence 345688888888999999865 6777777777776654421122344442110 01 1111
Q ss_pred cccCCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhh
Q 003115 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~~~-~~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
...-..|+++- .+|..++..|-+++.+...- ++....++++++-+.+..-|.++
T Consensus 214 S~FRPSDDa~~~~~~iPsN~~a~vaL~~~aei~~~l~~d~~La~~~~~la~eIr~aI~k~ 273 (427)
T 3qt9_A 214 SGFRPSDDACEYGYLIPANMFAVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKH 273 (427)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 11223455552 47888888888887776321 13456666666666666656554
No 422
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=22.58 E-value=2.6e+02 Score=30.36 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCChhhhhccCCC-ccCccchHHHHHHHHhcCCCEEEEEecc--CCh---hhhhhhhcccCCHHHHHHHhcCeEEEEEcC
Q 003115 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGYS--TCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (846)
Q Consensus 108 e~SpYL~~ha~~~-v~W~~~~~eAl~~Ak~e~KpI~l~~g~~--wC~---wC~~me~etf~d~eVa~~ln~~FV~vkvD~ 181 (846)
...|+|+.+...| ..|+.+..+.+..|++-|---+|.+|+- -|+ +..+.-. -+++++.+.++..+-.+
T Consensus 140 ~g~~~LlL~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~~--at~~el~~~~~~~~~~~---- 213 (351)
T 2wam_A 140 IGTPFLLLAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTAH--SNNRELISDFQPSISEI---- 213 (351)
T ss_dssp TCCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEE--ESSGGGGTTSCCCCCSE----
T ss_pred CCCcEEEEECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEEE--ECCHHHHHhcCCccCcc----
Confidence 4568999888777 7999999999999999998888877553 232 2222211 24666655443211111
Q ss_pred CCCcc-HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHH--HcHHHHHHHHHH
Q 003115 182 EERPD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (846)
Q Consensus 182 ee~p~-~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~~~~~a~~ 258 (846)
+.|- +...++..+ +..|.|...|+-. .-.|+.-. .....=+.+|+.|.+... =+-+.|.+.|++
T Consensus 214 -~gp~GisglL~~~~----~~~Gi~a~~l~~~------vP~Yla~~--pdP~AA~alL~~L~~llgl~ip~~~L~e~Ae~ 280 (351)
T 2wam_A 214 -QVPGSASNLLEYRM----AQHGHEVVGFTVH------VPHYLTQT--DYPAAAQALLEQVAKTGSLQLPLAVLAEAAAE 280 (351)
T ss_dssp -EEECCHHHHHHHHH----HHTTCCEEEEEEE------EEGGGTTS--CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred -cccccHHHHHHHHH----HHcCCCEEEEEEe------CCccccCC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 1232 233333333 3458999988733 11243210 011256778888887764 578999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhcccc
Q 003115 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSR 299 (846)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~ 299 (846)
+.+.+++..... +.+.+.+++|.+++|..
T Consensus 281 ie~~i~el~~~~------------~e~~~~V~~LE~qyD~~ 309 (351)
T 2wam_A 281 VQAKIDEQVQAS------------AEVAQVVAALERQYDAF 309 (351)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC------------HHHHHHHHHHHhhhchh
Confidence 999998765321 23566778898999984
No 423
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=22.39 E-value=1.4e+03 Score=29.75 Aligned_cols=76 Identities=8% Similarity=-0.025 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003115 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (846)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~vgGGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~~~~y~~~A~~t~~fl~r~ 415 (846)
++++.+....+++.. |-+-+|||.= | ++-+--.+.-|..+..+++|-....-+ ..+..++++||.++
T Consensus 1044 ~~~~~i~~g~~r~l~---~q~~dGsfs~------w--~~~~~s~wLTAyv~~~l~~A~~~~~v~--~~~l~~a~~~L~~~ 1110 (1676)
T 3cu7_A 1044 KLKKKLKEGMLSIMS---YRNADYSYSV------W--KGGSASTWLTAFALRVLGQVNKYVEQN--QNSICNSLLWLVEN 1110 (1676)
T ss_dssp HHHHHHHHHHHHGGG---GBCTTSCBCS------S--SSSCCCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---ccCCCCCccc------c--CCCCCcEEEeHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHh
Confidence 455555555555532 4566888863 5 444556788999999999998875322 56778999999984
Q ss_pred ccCCCCcee
Q 003115 416 MIGPGGEIF 424 (846)
Q Consensus 416 m~~~~Ggfy 424 (846)
-+.++|.|-
T Consensus 1111 ~q~~~g~f~ 1119 (1676)
T 3cu7_A 1111 YQLDNGSFK 1119 (1676)
T ss_dssp SBCTTSCBC
T ss_pred hCCCCCccc
Confidence 445677663
No 424
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=22.32 E-value=42 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=19.0
Q ss_pred hcCCCEEEEEeccCChhhhhhhhc
Q 003115 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (846)
Q Consensus 136 ~e~KpI~l~~g~~wC~wC~~me~e 159 (846)
...|..++.|.-..|+||..++..
T Consensus 9 ~~a~~~i~~f~D~~Cp~C~~~~~~ 32 (186)
T 3bci_A 9 KNGKPLVVVYGDYKCPYCKELDEK 32 (186)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 346777888999999999999864
No 425
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=21.85 E-value=2.1e+02 Score=30.71 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=100.2
Q ss_pred CCChhhhhccCCC-ccCccchHHHHHHHHhcCCCEEEEEec--cCChhhhhh-hhcccCCHHHHHHHhcCeEEEEEcCCC
Q 003115 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGY--STCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREE 183 (846)
Q Consensus 108 e~SpYL~~ha~~~-v~W~~~~~eAl~~Ak~e~KpI~l~~g~--~wC~wC~~m-e~etf~d~eVa~~ln~~FV~vkvD~ee 183 (846)
+..|+|+.+...| ..|+.+..+-+..|++-|---+|.+|+ .-++--+.. =--+-+++++.+.++.. ...-+
T Consensus 103 ~~~~~llL~G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at~~el~~~~~~~-----~~~~~ 177 (325)
T 3e35_A 103 TGAPFLFLSGPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGSRTDLVPGHRSP-----FEEAQ 177 (325)
T ss_dssp TCCEEEEEEEECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEESCGGGCC----------CCCCC
T ss_pred CCCcEEEEECCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeCCHHHHHhhccc-----cccCC
Confidence 4568888887776 899999999999999999888888765 223311111 00012455555544421 11122
Q ss_pred Ccc-HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcccHHHHHHHHHHHHHHc----HHHHHHHHHH
Q 003115 184 RPD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKK----RDMLAQSGAF 258 (846)
Q Consensus 184 ~p~-~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~----~~~~~~~a~~ 258 (846)
.|- +....+..+ +..|.|...|+-.- -.|+... .....=+.+|+.+.+...-+ -+.|.+.|++
T Consensus 178 gp~Gi~glL~~~~----~~~Gi~a~~l~~~v------PhYla~~--p~P~AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~ 245 (325)
T 3e35_A 178 VPGSAEALVEYRL----AQAGHDVLGVAAHV------PHYVARS--AYPDAALTVLEAITAATGLVLPGIAHSLRTDAHR 245 (325)
T ss_dssp CCCCHHHHHHHHH----HHTTCCEEEEEEEE------EGGGTTS--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHH----HHCCCCeEEEEEEc------CccccCC--CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 342 233333222 34588877665321 1243211 11236778899998887643 6799999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCC
Q 003115 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGF 303 (846)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGf 303 (846)
+.+++++..... .+-+.+.+++|.++||..-++-
T Consensus 246 ~e~~i~el~~~~-----------~~E~~~~V~~LE~~yD~~~~~~ 279 (325)
T 3e35_A 246 TQTEIDRQIQEG-----------DEELIALVQGLEHQYDAAAGAE 279 (325)
T ss_dssp HHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhcc-----------CHHHHHHHHHHHHHHhhhhhhc
Confidence 999998765430 0236788899999999986654
No 426
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=21.07 E-value=5.4e+02 Score=28.67 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHccccCCCcccccCCC---CC--------------cccc
Q 003115 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---DP--------------SVLL 676 (846)
Q Consensus 619 leDyA~~i~aLl~LYe~Tgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~--------------~l~~ 676 (846)
+|--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.- +++.+.|.+.-.. .+ .++-
T Consensus 133 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~eq-~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 211 (426)
T 3qry_B 133 VDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQ-DHKNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTW 211 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTT-SGGGCCCCCEECCSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHh-ccCCCCceeeecCCCCCccccCCCCCCCcCCCCcee
Confidence 345688888888999999865 67778888888777643 2233444442110 01 1111
Q ss_pred cccCCCCCCCC-----ChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHhh
Q 003115 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVFETRLKDM 730 (846)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~---~~~~~~y~~~A~~~l~~~~~~i~~~ 730 (846)
...-..|+++- .+|..++..|-+++.+.. -.+++...++++++-+.+..-|.++
T Consensus 212 S~FRPSDDa~~~~~~iPsN~~~~v~L~~~aei~~~~~v~~d~~la~~~~~la~eIr~~I~k~ 273 (426)
T 3qry_B 212 SAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNY 273 (426)
T ss_dssp CSBCTTSSBCSSSEEHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 11223455552 478888888988887764 1123455566665556665555554
No 427
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.03 E-value=69 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=26.0
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|+++..+...+..++++|..
T Consensus 27 s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 27 TLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999975
No 428
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.93 E-value=83 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.9
Q ss_pred CchHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003115 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (846)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~~L~~ 527 (846)
+..++|+.+|+++..+...+..++++|..
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999975
No 429
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=20.85 E-value=92 Score=30.57 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred cCCCEEEEEeccCChhhhhhhhcccCCHHHHHH
Q 003115 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL 169 (846)
Q Consensus 137 e~KpI~l~~g~~wC~wC~~me~etf~d~eVa~~ 169 (846)
..|..++.|.-..|++|+.++..++ +.+.+.
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~--~~l~~~ 58 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIF--PKIQKD 58 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTH--HHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHhh--HHHHHH
Confidence 4566788899999999999987543 556543
No 430
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=20.65 E-value=2.4e+02 Score=30.10 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCCEEEEEecc--CChhhhhhhhcccCC
Q 003115 127 GEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESFED 163 (846)
Q Consensus 127 ~~eAl~~Ak~e~KpI~l~~g~~--wC~wC~~me~etf~d 163 (846)
...+.+.||+.|-.|+|+|+++ |+-.++......+.+
T Consensus 62 ~~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~ 100 (332)
T 1hjs_A 62 NIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPS 100 (332)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCC
T ss_pred HHHHHHHHHHCCCEEEEEeccCCCcCCccccCCcccccc
Confidence 3568888999999999999886 777776543334444
No 431
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A
Probab=20.46 E-value=2.2e+02 Score=27.43 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=39.0
Q ss_pred EeccCChhhhhhhhcccCCHHHHHHHhcCeEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003115 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (846)
Q Consensus 145 ~g~~wC~wC~~me~etf~d~eVa~~ln~~FV~vkvD~ee~p~~~~~y~~~~~~~~g~~G~P~~v~l~pdg~~~~ 218 (846)
++.++|++|++..- +.+..+-.|-.+.||..+.+.. ..+++.+-.|..+ +.+|..+.
T Consensus 7 y~~~~sp~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~--------~~~~p~~~vP~l~--~~~g~~l~ 63 (218)
T 3ir4_A 7 YIYDHCPFCVKARM-------IFGLKNIPVELNVLQNDDEATP--------TRMIGQKMVPILQ--KDDSRYLP 63 (218)
T ss_dssp EECTTCHHHHHHHH-------HHHHHTCCCEEEECCTTCCHHH--------HHHHSSSCSCEEE--CTTSCEEE
T ss_pred EcCCCCchHHHHHH-------HHHHcCCceEEEECCCcchhhh--------hhcCCCceeeeEE--EeCCeEee
Confidence 68889999998653 3455555788888888654321 1335778899876 56777665
Done!