Query 003116
Match_columns 846
No_of_seqs 693 out of 3397
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 8.3E-27 1.8E-31 272.3 21.2 251 7-264 262-520 (525)
2 PRK09392 ftrB transcriptional 99.8 1.3E-19 2.9E-24 191.2 20.1 213 429-671 6-218 (236)
3 KOG1113 cAMP-dependent protein 99.8 3.6E-20 7.8E-25 195.6 12.0 221 428-671 120-343 (368)
4 KOG0498 K+-channel ERG and rel 99.8 1.7E-18 3.6E-23 203.1 19.9 203 347-560 344-550 (727)
5 PRK11753 DNA-binding transcrip 99.8 5.6E-18 1.2E-22 175.4 18.7 204 439-667 6-210 (211)
6 KOG0614 cGMP-dependent protein 99.8 3.2E-18 7E-23 187.3 11.9 227 428-671 152-381 (732)
7 PRK10402 DNA-binding transcrip 99.7 1.7E-17 3.6E-22 174.3 14.3 190 448-671 26-215 (226)
8 PRK11161 fumarate/nitrate redu 99.7 2.4E-17 5.2E-22 173.8 15.2 215 432-672 15-231 (235)
9 TIGR00840 b_cpa1 sodium/hydrog 99.7 8.4E-18 1.8E-22 196.8 12.4 159 7-181 290-449 (559)
10 PLN03192 Voltage-dependent pot 99.7 9.6E-16 2.1E-20 189.4 26.0 185 365-560 318-503 (823)
11 TIGR03697 NtcA_cyano global ni 99.7 6.8E-17 1.5E-21 164.8 12.6 186 461-672 1-190 (193)
12 PRK13918 CRP/FNR family transc 99.7 7.9E-16 1.7E-20 158.3 14.3 188 452-671 5-195 (202)
13 KOG1966 Sodium/hydrogen exchan 99.7 3E-17 6.5E-22 183.9 3.8 151 16-182 331-482 (670)
14 PRK09391 fixK transcriptional 99.7 1.5E-15 3.3E-20 159.9 16.0 192 449-671 34-226 (230)
15 COG0664 Crp cAMP-binding prote 99.6 7.3E-15 1.6E-19 151.1 18.5 203 433-647 3-205 (214)
16 KOG0500 Cyclic nucleotide-gate 99.6 7.9E-14 1.7E-18 153.0 20.1 173 366-551 251-431 (536)
17 cd00038 CAP_ED effector domain 99.6 3.2E-14 7E-19 130.4 13.9 114 437-550 1-114 (115)
18 COG0025 NhaP NhaP-type Na+/H+ 99.5 1.1E-14 2.4E-19 166.1 9.3 141 4-158 275-416 (429)
19 PF00027 cNMP_binding: Cyclic 99.5 1.5E-13 3.3E-18 121.6 11.8 91 455-545 1-91 (91)
20 KOG0499 Cyclic nucleotide-gate 99.5 2.5E-13 5.3E-18 150.8 14.7 179 358-548 463-646 (815)
21 COG2905 Predicted signal-trans 99.5 5.6E-13 1.2E-17 149.0 16.4 132 427-562 4-135 (610)
22 smart00100 cNMP Cyclic nucleot 99.5 1.5E-12 3.2E-17 119.9 15.0 114 437-550 1-116 (120)
23 PLN02868 acyl-CoA thioesterase 99.3 6E-12 1.3E-16 143.9 13.9 116 426-544 4-119 (413)
24 KOG0614 cGMP-dependent protein 99.3 2.9E-12 6.3E-17 141.2 9.2 132 426-557 268-401 (732)
25 KOG1965 Sodium/hydrogen exchan 99.1 6.8E-11 1.5E-15 134.3 5.1 137 6-156 319-462 (575)
26 COG3263 NhaP-type Na+/H+ and K 99.1 3.5E-10 7.7E-15 123.1 8.7 123 2-153 271-394 (574)
27 KOG1113 cAMP-dependent protein 99.0 1.1E-09 2.4E-14 116.8 7.3 114 428-545 238-351 (368)
28 PRK05326 potassium/proton anti 98.9 3.8E-09 8.3E-14 125.6 9.2 124 12-155 275-398 (562)
29 KOG0501 K+-channel KCNQ [Inorg 98.7 8.7E-08 1.9E-12 106.9 10.7 173 367-554 493-669 (971)
30 KOG2968 Predicted esterase of 98.6 9.1E-08 2E-12 111.7 7.5 112 448-559 503-614 (1158)
31 TIGR00844 c_cpa1 na(+)/h(+) an 98.1 6.1E-06 1.3E-10 98.8 9.1 134 12-151 296-443 (810)
32 PRK11832 putative DNA-binding 97.7 0.00058 1.2E-08 69.9 13.7 172 447-647 16-194 (207)
33 KOG2968 Predicted esterase of 97.6 0.00025 5.5E-09 83.8 10.4 134 425-561 90-230 (1158)
34 PF00999 Na_H_Exchanger: Sodiu 97.4 2.6E-05 5.7E-10 88.3 -0.7 114 14-146 266-380 (380)
35 PF04831 Popeye: Popeye protei 97.3 0.0077 1.7E-07 58.1 14.8 115 440-559 14-135 (153)
36 KOG3542 cAMP-regulated guanine 96.4 0.004 8.8E-08 71.5 5.2 111 427-542 278-390 (1283)
37 KOG3542 cAMP-regulated guanine 91.6 0.22 4.7E-06 57.9 4.8 92 427-531 34-125 (1283)
38 PF13545 HTH_Crp_2: Crp-like h 84.9 0.19 4.2E-06 42.8 -1.0 46 613-671 29-74 (76)
39 KOG4505 Na+/H+ antiporter [Ino 76.5 2.5 5.5E-05 46.1 3.7 129 13-148 297-435 (467)
40 TIGR00831 a_cpa1 Na+/H+ antipo 70.4 35 0.00077 40.6 11.7 77 335-413 444-520 (525)
41 PRK03659 glutathione-regulated 66.7 9.4 0.0002 46.2 6.0 76 12-101 266-342 (601)
42 cd00038 CAP_ED effector domain 66.7 13 0.00029 32.8 5.7 95 568-671 3-101 (115)
43 PRK11753 DNA-binding transcrip 64.4 14 0.0003 37.8 6.0 93 568-672 6-106 (211)
44 PF07883 Cupin_2: Cupin domain 53.7 43 0.00093 27.4 6.1 67 456-531 3-70 (71)
45 smart00835 Cupin_1 Cupin. This 51.5 73 0.0016 30.8 8.3 79 453-534 32-111 (146)
46 PLN02868 acyl-CoA thioesterase 50.5 29 0.00063 39.9 6.1 97 565-672 14-113 (413)
47 PRK11161 fumarate/nitrate redu 49.1 43 0.00093 34.9 6.7 43 569-612 23-69 (235)
48 PLN03159 cation/H(+) antiporte 47.3 29 0.00064 43.7 5.9 52 45-101 349-401 (832)
49 PRK09392 ftrB transcriptional 45.9 39 0.00084 35.3 5.8 47 565-612 13-62 (236)
50 PRK03562 glutathione-regulated 44.1 52 0.0011 40.1 7.2 74 12-99 269-343 (621)
51 COG3718 IolB Uncharacterized e 41.4 82 0.0018 33.1 6.8 65 453-531 31-108 (270)
52 smart00100 cNMP Cyclic nucleot 40.6 73 0.0016 27.9 6.1 43 569-612 4-49 (120)
53 TIGR03037 anthran_nbaC 3-hydro 40.3 1E+02 0.0022 30.7 7.1 64 463-534 41-104 (159)
54 PRK13290 ectC L-ectoine syntha 38.3 1.7E+02 0.0037 27.8 8.2 68 454-531 38-106 (125)
55 PF10925 DUF2680: Protein of u 37.2 1.5E+02 0.0033 24.3 6.6 48 222-269 7-54 (59)
56 PF00027 cNMP_binding: Cyclic 37.0 61 0.0013 27.4 4.7 29 586-614 2-33 (91)
57 PF09851 SHOCT: Short C-termin 35.5 63 0.0014 22.8 3.6 26 383-408 3-28 (31)
58 PF12476 DUF3696: Protein of u 33.5 19 0.00041 28.5 0.8 15 697-711 28-42 (52)
59 PF02268 TFIIA_gamma_N: Transc 32.4 1.4E+02 0.0031 23.5 5.4 36 231-266 11-46 (49)
60 PLN03192 Voltage-dependent pot 32.2 1.9E+02 0.0041 36.6 9.7 96 565-672 380-481 (823)
61 PRK10669 putative cation:proto 32.1 89 0.0019 37.5 6.5 70 17-100 282-352 (558)
62 COG2147 RPL19A Ribosomal prote 31.7 89 0.0019 30.4 5.0 35 224-258 91-125 (150)
63 KOG2378 cAMP-regulated guanine 31.0 39 0.00084 38.6 2.9 43 501-543 1-44 (573)
64 KOG0498 K+-channel ERG and rel 31.0 1.3E+02 0.0028 37.2 7.5 47 566-613 426-475 (727)
65 PRK13264 3-hydroxyanthranilate 29.4 1.4E+02 0.003 30.3 6.1 68 459-534 42-110 (177)
66 KOG1582 UDP-galactose transpor 27.3 71 0.0015 34.3 3.9 78 17-104 230-308 (367)
67 PRK10402 DNA-binding transcrip 26.9 1E+02 0.0022 32.0 5.2 80 582-671 30-115 (226)
68 TIGR02451 anti_sig_ChrR anti-s 24.7 1.9E+02 0.0042 30.1 6.6 68 452-534 128-197 (215)
69 PF12973 Cupin_7: ChrR Cupin-l 24.5 2.8E+02 0.0062 24.3 6.8 64 452-530 25-88 (91)
70 COG3329 Predicted permease [Ge 24.3 2E+02 0.0044 31.5 6.6 13 18-30 19-31 (372)
71 PRK09391 fixK transcriptional 24.2 1.2E+02 0.0026 31.7 5.1 33 581-613 36-71 (230)
72 PF05899 Cupin_3: Protein of u 23.5 1.1E+02 0.0024 26.1 3.8 41 458-505 14-54 (74)
73 TIGR03404 bicupin_oxalic bicup 21.7 2.5E+02 0.0054 31.9 7.3 51 454-505 70-120 (367)
74 KOG2927 Membrane component of 21.4 1.4E+02 0.0031 33.2 5.0 48 49-104 191-238 (372)
75 COG0664 Crp cAMP-binding prote 21.1 1.7E+02 0.0036 29.2 5.4 83 581-672 21-108 (214)
76 COG2118 DNA-binding protein [G 20.4 2.4E+02 0.0052 26.3 5.4 48 352-412 53-104 (116)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=8.3e-27 Score=272.25 Aligned_cols=251 Identities=15% Similarity=0.129 Sum_probs=184.3
Q ss_pred HHHHHHHHHhhHHhhhhhhhcchhhhcccccccc--cCchhH---HHHHHHHHHHHHHHHHHHHHh--HHHhhhcCCCCC
Q 003116 7 LAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQ--NHGNSW---GYLILLYIFVQVSRLFVVGTL--YPVLRNFGYGLE 79 (846)
Q Consensus 7 ~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~--~~~~~~---~~~l~l~v~v~~~R~l~v~~l--~p~l~~~~~~~~ 79 (846)
..|..+.+.+|+++|+++|++++..+........ .....+ .+++++|..+.++|++|++.. .+..++.+.+++
T Consensus 262 ~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 341 (525)
T TIGR00831 262 DFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFG 341 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 4555566666999999999999873322110000 000112 225667777888999877642 223334456789
Q ss_pred cceeeeeeeccchhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHHHHH
Q 003116 80 WKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRI 159 (846)
Q Consensus 80 ~r~~~vl~wgGLRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~~~~ 159 (846)
||+.++++|+|+||+||+|+|+++|...++|.+|| .|+.++|++++||++|+++||+|+|+++|++|+++.++. +..
T Consensus 342 ~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p--~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e 418 (525)
T TIGR00831 342 TRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP--ARYELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSER-ELE 418 (525)
T ss_pred hhhHHHheeccchHHHHHHHHHHccccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHH
Confidence 99999999999999999999999998877777788 489999999999999999999999999999999887654 344
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCChHHH-HHHHHHhhhccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 003116 160 LDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAA 238 (846)
Q Consensus 160 ~~~~~~~~~~~a~~~l~~l~~d~~l~~a~~~~v-~~y~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~~R~r~L~~er~~ 238 (846)
+..++..+.+++++.++++.++...+++..+.+ ++|..++++.+.+. ....+ +...+.+...++|++++++||+.
T Consensus 419 ~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~er~~ 494 (525)
T TIGR00831 419 EIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADG---EEKIR-SGMGEKNLRRRARLYVLDAKRSA 494 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhc---ccchh-hhhhhhhHHHHHHHHHHHHHHHH
Confidence 677888999999999998877665544444444 67877766543221 11000 00011123557899999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhh
Q 003116 239 YWAMLDEGRITQTAANILMQSVDEGI 264 (846)
Q Consensus 239 ~~~~~~~G~Is~~~~~~L~~~ld~~l 264 (846)
+.+++++|.||+++++.+++.+|...
T Consensus 495 l~~~~~~~~i~~~~~~~~~~~ld~~e 520 (525)
T TIGR00831 495 VVDLRAGGLISQEVLLELMRELDLKE 520 (525)
T ss_pred HHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence 99999999999999999999998754
No 2
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.83 E-value=1.3e-19 Score=191.22 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=171.2
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
.++++.++||..|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++...+|++ .++..+.+|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~-~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRE-TTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCce-EEEEEeCCCchhhhH
Confidence 4689999999999999999999999999999999999999999999999999999998765554 557899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccc
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 588 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y 588 (846)
+++.+.|+.++++|.++|+++.||++.|.+++.++|.+..++.+.++.++..+. +....+...+.+.+++ .......
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rla-~~Ll~~~ 161 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV--KSLKNQKLRSSAERLA-NYLLKQS 161 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCHHHHHH-HHHHHhc
Confidence 999999999999999999999999999999999999999999999988888754 2333344444444444 1111111
Q ss_pred cCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecc
Q 003116 589 LRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIA 668 (846)
Q Consensus 589 ~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~ 668 (846)
.. .+... .+....++++ |+...++.|.++++.|++|+..|+ ...+ ++|.++|.+
T Consensus 162 ~~------~~~~~------~~~i~~t~~~-iA~~lG~tretvsR~l~~L~~~gl-~~~~------------~~i~I~d~~ 215 (236)
T PRK09392 162 LR------QGGAD------VVTLPYEKRV-LASYLGMTPENLSRAFAALASHGV-HVDG------------SAVTITDPA 215 (236)
T ss_pred cc------cCCCc------EEEeeCCHHH-HHHHhCCChhHHHHHHHHHHhCCe-EeeC------------CEEEEcCHH
Confidence 11 00000 1222223435 588899999999999999999996 5455 789999999
Q ss_pred ccc
Q 003116 669 AFE 671 (846)
Q Consensus 669 ~~~ 671 (846)
+|+
T Consensus 216 ~L~ 218 (236)
T PRK09392 216 GLA 218 (236)
T ss_pred HHH
Confidence 997
No 3
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.82 E-value=3.6e-20 Score=195.57 Aligned_cols=221 Identities=12% Similarity=0.157 Sum_probs=182.9
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.+++++.-+|++|+++++..+++++.++.+++|++|++||+.++++|+|.+|.+.++..+ . .+..+++|+.|||
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~---~--~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG---T--YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC---e--EEeeeCCCCchhh
Confidence 4568899999999999999999999999999999999999999999999999999999863 2 2579999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
++++.+.||.+|++|.+++.+|.+++..|.+++..+....++++..+...+. +++.+...+..+++ +....+.
T Consensus 195 lALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~p------il~~l~k~er~kv~-dal~~k~ 267 (368)
T KOG1113|consen 195 LALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVP------ILESLEKLERAKVA-DALGTKS 267 (368)
T ss_pred hHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcch------hhHHHHHHHHHhhh-cccceee
Confidence 9999999999999999999999999999999999998888999988766654 45555555555544 6788889
Q ss_pred ccCCcEEEecC---cEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEE
Q 003116 588 CLRGEIIEIPY---HCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664 (846)
Q Consensus 588 y~~ge~I~~~~---~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~ 664 (846)
|+.|+.|+.++ +.+++|.+|++.+....+. ...+-..-++|++++ +..+-+++|+++.. ++.+|..
T Consensus 268 y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~------v~vkl~~~dyfge~a----l~~~~pr~Atv~a~-~~~kc~~ 336 (368)
T KOG1113|consen 268 YKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG------VEVKLKKGDYFGELA----LLKNLPRAATVVAK-GRLKCAK 336 (368)
T ss_pred ccCCceEEeccCCcceEEEecccccchhhccCC------eEEEechhhhcchHH----HHhhchhhceeecc-CCceeee
Confidence 99999998773 4889999999876433211 112444455777665 56666677777666 9999999
Q ss_pred Eeccccc
Q 003116 665 FDIAAFE 671 (846)
Q Consensus 665 ~d~~~~~ 671 (846)
+|.++|+
T Consensus 337 ~dk~~fe 343 (368)
T KOG1113|consen 337 LDKPRFE 343 (368)
T ss_pred eChHHHH
Confidence 9999997
No 4
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-18 Score=203.09 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh-CCcchhh-HhhhhHHHHHHHHHHhcCCCCCC
Q 003116 347 KVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLRNPPLVK 424 (846)
Q Consensus 347 ~~~~~~A~~~L~~lr~~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~-GlIde~E-~~~L~~~L~~~lk~l~~~p~~~~ 424 (846)
++=.+......++++.+.-++.++|+.++++..+.+++++|+++-|.. .-+|+++ ...|++.|+.++++.++
T Consensus 344 t~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~------ 417 (727)
T KOG0498|consen 344 TALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC------ 417 (727)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh------
Confidence 333344455677788888899999999999999999999999999988 3456665 57799999999999775
Q ss_pred ccchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCe
Q 003116 425 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 504 (846)
Q Consensus 425 ~~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~ 504 (846)
.++++++|+|+++++..++.|+..++...|+||++|++|||+++.+|||.+|.+++...+.||... ...+++||+
T Consensus 418 ----~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~-~~~L~~Gd~ 492 (727)
T KOG0498|consen 418 ----LDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV-VAILGPGDF 492 (727)
T ss_pred ----HHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE-EEEecCCCc
Confidence 678999999999999999999999999999999999999999999999999999999887766444 689999999
Q ss_pred ec-hhhhhcC-CCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 505 LG-LYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 505 fG-E~sll~~-~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
|| |+..... .|.++||+|+|.|+++.|.+++|..+++++|.+...+++.....+..
T Consensus 493 ~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 493 FGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred cchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99 8888777 78899999999999999999999999999999999888876555554
No 5
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.78 E-value=5.6e-18 Score=175.44 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=158.9
Q ss_pred CCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCC-Cce
Q 003116 439 RELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PYM 517 (846)
Q Consensus 439 ~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~-pr~ 517 (846)
+.+++++++.+.+.+..+.|++|++|+.+|++++++|+|.+|.++++..+.+|+..+...+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4689999999999999999999999999999999999999999999988776777777899999999999999864 688
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCCcEEEec
Q 003116 518 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIP 597 (846)
Q Consensus 518 ~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~ 597 (846)
++++|.++|.++.||+++|.+++.++|.+...+.+.++.++.... .....+...+.+.+++ ......+........
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~Rl~-~~L~~l~~~~~~~~~- 161 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS--RKVGDLAFLDVTGRIA-QTLLDLAKQPDAMTH- 161 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHhcChhhHHH-HHHHHHHHhcCCcCC-
Confidence 999999999999999999999999999999999999888886533 2223444455554443 111111111100000
Q ss_pred CcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEec
Q 003116 598 YHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDI 667 (846)
Q Consensus 598 ~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~ 667 (846)
++ | +...-++++ |+...+++|+++++.|+.|+..|++.... .+|++.|.
T Consensus 162 ~~-------~-~~~~~t~~~-lA~~lG~tr~tvsR~l~~l~~~gii~~~~------------~~i~i~~~ 210 (211)
T PRK11753 162 PD-------G-MQIKITRQE-IGRIVGCSREMVGRVLKMLEDQGLISAHG------------KTIVVYGT 210 (211)
T ss_pred CC-------c-eecCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecC------------CEEEEecC
Confidence 11 1 112234545 58999999999999999999999998877 67777663
No 6
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.75 E-value=3.2e-18 Score=187.34 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=180.3
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.+.+....++++|++.++..+.++|....|.+|.+|++|||+++.+|++.+|.+.|...+ .++..+++|.+|||
T Consensus 152 I~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g-----~ll~~m~~gtvFGE 226 (732)
T KOG0614|consen 152 IRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREG-----KLLGKMGAGTVFGE 226 (732)
T ss_pred HHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCC-----eeeeccCCchhhhH
Confidence 4567888899999999999999999999999999999999999999999999999998743 34689999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
++.|.+++|+++|.|+++|++|.|+++.|+.+|...-.-+..-+.++..... +|.+++.+-+.+++ +......
T Consensus 227 LAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~------~~q~l~Ee~L~Kia-D~le~~~ 299 (732)
T KOG0614|consen 227 LAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP------LFQNLPEELLLKIA-DVLEEEY 299 (732)
T ss_pred HHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhccCCHHHHHHHH-HHHHHHh
Confidence 9999999999999999999999999999999998876655555555555544 56678866666655 6777778
Q ss_pred ccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEE
Q 003116 588 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664 (846)
Q Consensus 588 y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~ 664 (846)
|..|+.|..+++ .|++|..|.|++++.. |.-..|..+---+--.+|++-+ +..+--+.|.+++.+....|..
T Consensus 300 Yd~g~yIirqge~G~~ffii~~G~V~vtq~~-e~~~q~~~lr~l~kGd~FGE~a----l~~edvRtAniia~~~gv~cl~ 374 (732)
T KOG0614|consen 300 YDAGEYIIRQGEKGDTFFIISKGTVKVTQQD-EGSTQPQELRTLNKGDYFGERA----LLGEDVRTANIIAQAPGVECLT 374 (732)
T ss_pred hcCCceEEeecCCCCeEEEEecceEEEeecC-CCCCchhHHhhccccchhhHHH----hhccCccchhhhccCCCceEEE
Confidence 999999998874 8999999999987643 2112222211011111444333 2333458899999999999999
Q ss_pred Eeccccc
Q 003116 665 FDIAAFE 671 (846)
Q Consensus 665 ~d~~~~~ 671 (846)
+|.++|.
T Consensus 375 lDresF~ 381 (732)
T KOG0614|consen 375 LDRESFK 381 (732)
T ss_pred ecHHHHH
Confidence 9998886
No 7
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.74 E-value=1.7e-17 Score=174.26 Aligned_cols=190 Identities=13% Similarity=0.087 Sum_probs=153.2
Q ss_pred HHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEE
Q 003116 448 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 527 (846)
Q Consensus 448 ~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ 527 (846)
.+.+.+..+.|++|++|+.+||+++++|+|.+|.|+++..+.+|+..++..+.+|++||+.+++.+.+++++++|.++|+
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 47778889999999999999999999999999999999988777777778999999999999999999999999999999
Q ss_pred EEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCCcEEEecCcEEEEEEec
Q 003116 528 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEG 607 (846)
Q Consensus 528 ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~~~~iL~~G 607 (846)
++.||++.|..++.++|.+...+.+.++.++..... .... ....+.+.+++ ..+.....+ +
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~Rla--~~L~~~~~~-------~-------- 166 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIV-SLTQ-NQSFPLENRLA--AFILLTQEG-------D-------- 166 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHH-hccChHHHHHH--HHHHhcccC-------C--------
Confidence 999999999999999999999999888887665332 1211 22224444443 111111111 0
Q ss_pred eEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 608 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 608 ~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.. ..++++ ++...+++|.+.++.|++|+..|++.... .+|.++|.++|.
T Consensus 167 ~~--~~t~~~-lA~~lG~sretvsR~L~~L~~~G~I~~~~------------~~i~I~d~~~L~ 215 (226)
T PRK10402 167 LY--HEKHTQ-AAEYLGVSYRHLLYVLAQFIQDGYLKKSK------------RGYLIKNRKQLS 215 (226)
T ss_pred cc--cchHHH-HHHHHCCcHHHHHHHHHHHHHCCCEEeeC------------CEEEEeCHHHHH
Confidence 00 113545 58889999999999999999999998888 889999999887
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.74 E-value=2.4e-17 Score=173.83 Aligned_cols=215 Identities=13% Similarity=0.044 Sum_probs=163.8
Q ss_pred HhcCCCCCCCCHhhHHHHhhcCe-EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhh
Q 003116 432 ISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 510 (846)
Q Consensus 432 L~~~~lF~~Ls~e~l~~L~~~~~-~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sl 510 (846)
+++.+.|..|++++++.|..... .+.|++|++|+++||+++++|+|.+|.|+++..+.+|+..+...+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 55566666799999999998886 56899999999999999999999999999999887777777788899999999776
Q ss_pred hcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC
Q 003116 511 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR 590 (846)
Q Consensus 511 l~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ 590 (846)
+. .+++++++|.++|+++.||++.|.+++.++|.+...+++.+..++.... .....+...+.+.+++ ..+......
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rla-~~L~~l~~~ 170 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ--EMILLLSKKNAEERLA-AFIYNLSRR 170 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhCCCHHHHHH-HHHHHHHHH
Confidence 54 4566789999999999999999999999999999999999888877543 2222333334444433 111111110
Q ss_pred -CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccc
Q 003116 591 -GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAA 669 (846)
Q Consensus 591 -ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~ 669 (846)
|..- .++ +.+...-++++ |+...+++|.+.++.|+.|+..|++...+ .++.+.|.++
T Consensus 171 ~~~~~--~~~-------~~~~~~lt~~~-iA~~lG~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~~~ 228 (235)
T PRK11161 171 FAQRG--FSP-------REFRLTMTRGD-IGNYLGLTVETISRLLGRFQKSGMLAVKG------------KYITIENNDA 228 (235)
T ss_pred HhhcC--CCC-------ceeEccccHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEecC------------CEEEEcCHHH
Confidence 1000 000 11222234545 58999999999999999999999999999 8999999998
Q ss_pred ccc
Q 003116 670 FEA 672 (846)
Q Consensus 670 ~~~ 672 (846)
++.
T Consensus 229 L~~ 231 (235)
T PRK11161 229 LAQ 231 (235)
T ss_pred HHH
Confidence 864
No 9
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.73 E-value=8.4e-18 Score=196.81 Aligned_cols=159 Identities=23% Similarity=0.387 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcC-CCCCcceeee
Q 003116 7 LAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-YGLEWKEAII 85 (846)
Q Consensus 7 ~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~-~~~~~r~~~v 85 (846)
..|..++..+|++||+++|++++.. .+.++|.++++++++++++|+++|+++.++.+++. .+++|+++++
T Consensus 290 ~f~~~ls~l~e~~IFvlLGl~l~~~---------~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~i 360 (559)
T TIGR00840 290 YFMKMLSSLSETLIFIFLGVSLVTE---------NHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLV 360 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhh
Confidence 3455566667999999999987541 12346777888889999999999999999888664 6789999999
Q ss_pred eeeccchhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003116 86 LVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKY 165 (846)
Q Consensus 86 l~wgGLRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~~~~~~~~~~ 165 (846)
++|+|+||||++|+|+++|.. .+| .++.+++++++||++|+++||+|+||++++|++.+....+....+....
T Consensus 361 l~w~GlRGaVa~aLAl~l~~~-----~~~--~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~~~~~e~~~~ 433 (559)
T TIGR00840 361 IFYAGLRGAVAFALALLLDEK-----IFP--YKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKINEELHD 433 (559)
T ss_pred eeeeccccHHHHHHHHhCCCC-----Ccc--hHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccchhhHHHHHHH
Confidence 999999999999999998753 344 4799999999999999999999999999999998887766555555555
Q ss_pred HHHHHHHHHhhcccCC
Q 003116 166 EMLNTAFKTFGDLGDD 181 (846)
Q Consensus 166 ~~~~~a~~~l~~l~~d 181 (846)
+.++.....+|+....
T Consensus 434 ~~~~~~~~~ie~~~g~ 449 (559)
T TIGR00840 434 REFDHLLPGIEDICGQ 449 (559)
T ss_pred HHHHHHHhHHHHHhhh
Confidence 6667777777766543
No 10
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.71 E-value=9.6e-16 Score=189.43 Aligned_cols=185 Identities=10% Similarity=0.128 Sum_probs=163.0
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhh-HhhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCCCH
Q 003116 365 PQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPP 443 (846)
Q Consensus 365 P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~GlIde~E-~~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~Ls~ 443 (846)
-.+.++|+.++++..+.++.++|++..++..-+++.+ ...|++.|..++..... .++++++++|+++++
T Consensus 318 ~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~----------~~~l~~~~lF~~~s~ 387 (823)
T PLN03192 318 EAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF----------LPVVEKVYLFKGVSR 387 (823)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH----------HHHHhhCcchhcCCH
Confidence 3567889999999999999999999988876566655 46688888877766443 457899999999999
Q ss_pred hhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEc
Q 003116 444 SVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTD 523 (846)
Q Consensus 444 e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~ 523 (846)
+.+..|...++.+.|+|||.|+.+||.++.+|||.+|.|++..... +++.++..+++|++|||.+++.+.|++++++|.
T Consensus 388 ~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~-~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~ 466 (823)
T PLN03192 388 EILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEG-EKERVVGTLGCGDIFGEVGALCCRPQSFTFRTK 466 (823)
T ss_pred HHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecC-CcceeeEEccCCCEecchHHhcCCCCCCeEEEc
Confidence 9999999999999999999999999999999999999999986443 444556889999999999999999999999999
Q ss_pred ceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 524 SVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 524 ~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
+.|+++.|++++|.++++++|+....+.+.+..++.+
T Consensus 467 ~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 467 TLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred ccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988877654
No 11
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.70 E-value=6.8e-17 Score=164.82 Aligned_cols=186 Identities=12% Similarity=0.145 Sum_probs=145.1
Q ss_pred CCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCc--eeEEEEcceEEEEEEcHHHHHH
Q 003116 461 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY--MSDMVTDSVVLCFFIESDKILS 538 (846)
Q Consensus 461 Ge~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr--~~tv~A~~~~~ll~I~~~~f~~ 538 (846)
|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+. .++++|.++|.++.||++.|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999999887777777889999999999999988754 5789999999999999999999
Q ss_pred HHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhc--cccccccCCcEEEecCcEEEEEEeceEeeecchh
Q 003116 539 ILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER--SKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQE 616 (846)
Q Consensus 539 ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~--~~~~~y~~ge~I~~~~~~~~iL~~G~v~~~~~~e 616 (846)
++.++|.+...+.+.++.++.... .....+...+.+.+++.. .....+... .++.. .+...-+++
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rla~~L~~l~~~~~~~-----~~~~~------~~~~~~t~~ 147 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTE--MMIETLAHRDMGSRLVSFLLILCRDFGVP-----GQRGV------TIDLRLSHQ 147 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHhCCC-----CCCeE------EecCCCCHH
Confidence 999999999999999998887643 223334444545444311 011112110 00100 122233465
Q ss_pred hhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 617 ELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 617 eli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
+ |+...+++|.++++.|+.|+..|++...+ .+|.|.|.++|..
T Consensus 148 ~-iA~~lG~tretvsR~l~~l~~~g~I~~~~------------~~i~I~d~~~L~~ 190 (193)
T TIGR03697 148 A-IAEAIGSTRVTITRLLGDLRKKKLISIHK------------KKITVHDPIALGQ 190 (193)
T ss_pred H-HHHHhCCcHHHHHHHHHHHHHCCCEEecC------------CEEEEeCHHHHHH
Confidence 6 58999999999999999999999999988 9999999998864
No 12
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.66 E-value=7.9e-16 Score=158.33 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=142.2
Q ss_pred cCeEEEEcCCCEEecCCC--CCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEE
Q 003116 452 STKEIMKLSGVTLYREGS--KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 529 (846)
Q Consensus 452 ~~~~~~~~kGe~I~~eGd--~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll 529 (846)
.++.+.|++|++|+++|| +++++|+|++|.|+++..+.+|++.++..+.+|++||+.+++ +.++++++.|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456889999999999999 779999999999999999887888878899999999997654 57889999999999999
Q ss_pred EEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEEecCcEEEEEEece
Q 003116 530 FIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEIPYHCIGFLLEGF 608 (846)
Q Consensus 530 ~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~~~~~~~~iL~~G~ 608 (846)
.||.+.| +|.+...+.+.+..++.... ...+.+...+.+.+++ ..++..... |.. .++ .+.
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rla-~~Ll~l~~~~~~~---~~~------~~~ 145 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY--ESIYRLVGQRLKNRIA-AALLELSDTPLAT---QED------SGE 145 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHH-HHHHHHHHHhCCC---CCC------CCe
Confidence 9999987 57777788888877777643 2233344444444443 111111111 100 000 122
Q ss_pred EeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 609 IKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 609 v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+...-++++ |+...+++|.++++.|++|+..|++...+ .+|.|.|.++|+
T Consensus 146 ~~~~~t~~~-iA~~lG~tretvsR~l~~l~~~g~I~~~~------------~~i~I~d~~~L~ 195 (202)
T PRK13918 146 TMIYATHDE-LAAAVGSVRETVTKVIGELSREGYIRSGY------------GKIQLLDLKGLE 195 (202)
T ss_pred EEecCCHHH-HHHHhCccHHHHHHHHHHHHHCCCEEcCC------------CEEEEECHHHHH
Confidence 233345656 69999999999999999999999999877 899999999886
No 13
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3e-17 Score=183.86 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=129.9
Q ss_pred hhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCC-CCCcceeeeeeeccchhH
Q 003116 16 LCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-GLEWKEAIILVWSGLRGA 94 (846)
Q Consensus 16 ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~-~~~~r~~~vl~wgGLRGA 94 (846)
.+++||+++|+.+... ++.|+|+++++..+++++.|++.++.+.+++|+++. +++...++||++||||||
T Consensus 331 sEt~IF~fLGvs~v~~---------~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGA 401 (670)
T KOG1966|consen 331 SETVIFMFLGVSTVSS---------NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGA 401 (670)
T ss_pred cchhhheeehhhhcCC---------cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecCCcchh
Confidence 3789999999988752 478899999999999999999999999999998874 789999999999999999
Q ss_pred HHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003116 95 VALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKT 174 (846)
Q Consensus 95 VsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~~~~~~~~~~~~~~~a~~~ 174 (846)
|+.+|.+++|.+ .+|. .++++-.|..||+||.++||+|++|++++|++.+....++...+..-.+.++..+..
T Consensus 402 iaF~LV~lid~~-----~vp~--K~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~m~e~i~~~~~dhlm~g 474 (670)
T KOG1966|consen 402 IAFGLVVLIDGA-----KVPA--KNMFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRDPTMNEEIYNRLLDHLMAG 474 (670)
T ss_pred hheeEEEEeccc-----cCCc--ccceEeeeeEEEeeeeeecccchHHHHHHHccccccccCchhhHHHHHHHHHHHHHH
Confidence 999999999854 3563 688988899999999999999999999999998877666654455556677777888
Q ss_pred hhcccCCC
Q 003116 175 FGDLGDDE 182 (846)
Q Consensus 175 l~~l~~d~ 182 (846)
+|+.....
T Consensus 475 IEDi~G~~ 482 (670)
T KOG1966|consen 475 IEDIAGQK 482 (670)
T ss_pred HHHHhccc
Confidence 88886554
No 14
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.65 E-value=1.5e-15 Score=159.86 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=147.1
Q ss_pred HhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEE
Q 003116 449 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLC 528 (846)
Q Consensus 449 L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~l 528 (846)
+...+..+.|++|++|+.+||+++++|+|.+|.|+++..+.+|++.+...+.+|++||+. .+.++.++++|.++|.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 455677999999999999999999999999999999998877777677889999999964 46778999999999999
Q ss_pred EEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEEecCcEEEEEEec
Q 003116 529 FFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEIPYHCIGFLLEG 607 (846)
Q Consensus 529 l~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~~~~~~~~iL~~G 607 (846)
+.||.+.|.+++.++|.+..++++.+..++..... ....+...+.+.+++ ......... |. .+
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~--~~~~l~~~~~~~Rla-~~Ll~l~~~~g~-------------~~ 174 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQD--HMLLLGRKTAMERVA-AFLLEMDERLGG-------------AG 174 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH--HHHHHcCCCHHHHHH-HHHHHHHHHhCC-------------CC
Confidence 99999999999999999999999999988876431 122233334444443 111111111 10 01
Q ss_pred eEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 608 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 608 ~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.+...-++++ |+...+++|.+.++.|++|+..|++.... ++++.+.|.++|+
T Consensus 175 ~i~i~lt~~~-IA~~lGisretlsR~L~~L~~~GlI~~~~-----------~~~i~I~D~~~L~ 226 (230)
T PRK09391 175 MMALPMSRRD-IADYLGLTIETVSRALSQLQDRGLIGLSG-----------ARQIELRNRQALR 226 (230)
T ss_pred EEEecCCHHH-HHHHHCCCHHHHHHHHHHHHHCCcEEecC-----------CceEEEcCHHHHH
Confidence 2222334645 59999999999999999999999987542 2689999998875
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.64 E-value=7.3e-15 Score=151.11 Aligned_cols=203 Identities=20% Similarity=0.234 Sum_probs=154.4
Q ss_pred hcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhc
Q 003116 433 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI 512 (846)
Q Consensus 433 ~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~ 512 (846)
...+.|..++.+....+......+.+++|++|+++||+++++|+|.+|.++++....+|+..++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 44567777888888888888999999999999999999999999999999999998877777788999999999999999
Q ss_pred CCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCCc
Q 003116 513 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGE 592 (846)
Q Consensus 513 ~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ge 592 (846)
+.|+.++++|.++|+++.+|++.|..++.++|.+...+.+.++.++..... ....+...+....++ ..+.....
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~r~~--~~l~~l~~-- 156 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALE--RLSLLARKDVEERLA--RFLLNLGR-- 156 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHH--HHHHHhhccHHHHHH--HHHHHHhh--
Confidence 999999999999999999999999999877999999999999999987542 222233333333332 11111100
Q ss_pred EEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCcccccc
Q 003116 593 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSF 647 (846)
Q Consensus 593 ~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~ 647 (846)
........ ++.+ ...-++ +.++..+++++.+.++.++++...|++....
T Consensus 157 ~~~~~~~~-~~~~----~~~~~~-~~ia~~~g~~~~~vsr~l~~l~~~g~i~~~~ 205 (214)
T COG0664 157 RLGIATED-GILI----PLPLTH-KDLAEYLGLSRETVSRILKELRKDGLISVRG 205 (214)
T ss_pred ccCCCCCC-CcEE----eccCCH-HHHHHHhCCchhhHHHHHHHHHhCCcEeeCC
Confidence 00000000 0011 112224 3357777889999999999999999998887
No 16
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.58 E-value=7.9e-14 Score=153.00 Aligned_cols=173 Identities=16% Similarity=0.243 Sum_probs=148.5
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC-cchhhHhh-hhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCCCH
Q 003116 366 QVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEKEMLH-LHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPP 443 (846)
Q Consensus 366 ~i~~~~ktr~~~~~vL~~~~e~i~~L~~~Gl-Ide~E~~~-L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~Ls~ 443 (846)
++-.+|+.|+++..+..++.++..++|.++- .||+|+.. |++.+...+.--. ..+-|+++++|++..+
T Consensus 251 GiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nv----------h~dTLkkV~iF~~ce~ 320 (536)
T KOG0500|consen 251 GIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINV----------HLDTLKKVRIFQDCEA 320 (536)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHH----------HHHHHHhhhHHHhcch
Confidence 4668899999999999999999999998776 67777544 6666666555322 2467999999999999
Q ss_pred hhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhh------cCCCce
Q 003116 444 SVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL------IGKPYM 517 (846)
Q Consensus 444 e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll------~~~pr~ 517 (846)
..+..|.-.++...|.|||+||++||.+..+|+|.+|.+.+...+ |.. ....+.+|++|||++++ .|..|+
T Consensus 321 ~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD--g~t-~~~~L~~G~~FGEisIlni~g~~~gNRRt 397 (536)
T KOG0500|consen 321 GLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD--GVT-VFVTLKAGSVFGEISILNIKGNKNGNRRT 397 (536)
T ss_pred hHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC--CcE-EEEEecCCceeeeeEEEEEcCcccCCcce
Confidence 999999999999999999999999999999999999999997644 322 25799999999999888 367899
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHH
Q 003116 518 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 551 (846)
Q Consensus 518 ~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~ 551 (846)
|+|+....+.+++++++++.+++.++|+-...+.
T Consensus 398 anvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 398 ANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred eeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999999998766555
No 17
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.57 E-value=3.2e-14 Score=130.40 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=107.1
Q ss_pred CCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCc
Q 003116 437 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 516 (846)
Q Consensus 437 lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr 516 (846)
+|..++++++..+...++.+.+++|++|+.+|++++++|+|.+|.+++...+.+|+......+.+|++||+.+++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 58899999999999999999999999999999999999999999999999887777777789999999999999999999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHH
Q 003116 517 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 550 (846)
Q Consensus 517 ~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l 550 (846)
.++++|.++|.++.|+.+.|.+++.++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999987654
No 18
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.1e-14 Score=166.08 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhh-hcCCCCCcce
Q 003116 4 IIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKE 82 (846)
Q Consensus 4 ~s~~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~-~~~~~~~~r~ 82 (846)
....+|..+.+.+|+++|+++|.+++..... ...+..++++.++++++|++|+|+.++..+ +.+...+|++
T Consensus 275 ~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~--------~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~ 346 (429)
T COG0025 275 RLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL--------ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHH
Confidence 3455777777888999999999999974332 223778899999999999999999887654 3344579999
Q ss_pred eeeeeeccchhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHHHH
Q 003116 83 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRR 158 (846)
Q Consensus 83 ~~vl~wgGLRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~~~ 158 (846)
+++++|+|+||+|++|+|+++|..... ..|+.++++++++|++|+++||+|+|++++++...+.+...++
T Consensus 347 ~~~l~w~G~RG~vsla~al~~p~~~~~------~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~~ 416 (429)
T COG0025 347 RLFLSWAGPRGVVSLALALLIPLELPG------PARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKE 416 (429)
T ss_pred HHHHhhcccccHHHHHHHHHchhhccc------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhhH
Confidence 999999999999999999999976532 2589999999999999999999999999999998776654433
No 19
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.50 E-value=1.5e-13 Score=121.59 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=85.9
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHH
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 534 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~ 534 (846)
++.|++|++|+++|++++++|+|++|.+++...+.+++..+...+++|++||+.+++.+.++.++++|.++|+++.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 46899999999999999999999999999999998887766789999999999999999999999999999999999999
Q ss_pred HHHHHHhhChH
Q 003116 535 KILSILRSDPA 545 (846)
Q Consensus 535 ~f~~ll~~~p~ 545 (846)
.|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 20
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.49 E-value=2.5e-13 Score=150.81 Aligned_cols=179 Identities=16% Similarity=0.232 Sum_probs=148.9
Q ss_pred HHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh-CCcchhhH-hhhhHHHHHHHHHHhcCCCCCCccchHHHHhcC
Q 003116 358 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 435 (846)
Q Consensus 358 ~~lr~~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~-GlIde~E~-~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~ 435 (846)
...|...-+-..+|+...++..+.++++.++++-|++ +.+||++. ..|+..++.++.- .---..|.++
T Consensus 463 ~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi----------~V~y~~lSKV 532 (815)
T KOG0499|consen 463 NYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAI----------DVNYSILSKV 532 (815)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeE----------EeehhhhhHH
Confidence 3444455567788999999999999999999999965 56999874 3355544444331 1123568899
Q ss_pred CCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhh---c
Q 003116 436 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL---I 512 (846)
Q Consensus 436 ~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll---~ 512 (846)
.+|++.+...+..++-.++...|-||++||+.||.+..+|+|..|.|.|....+|. .++.++..|++|||+++| .
T Consensus 533 qLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~--~Vl~tL~~GsVFGEISLLaigG 610 (815)
T KOG0499|consen 533 QLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT--KVLVTLKAGSVFGEISLLAIGG 610 (815)
T ss_pred HHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC--EEEEEecccceeeeeeeeeecC
Confidence 99999999999999999999999999999999999999999999999998665443 346899999999999998 4
Q ss_pred CCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHH
Q 003116 513 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVED 548 (846)
Q Consensus 513 ~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~ 548 (846)
|..|+++|+|...|.++.++++++.+++..+|+-..
T Consensus 611 ~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~ 646 (815)
T KOG0499|consen 611 GNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQR 646 (815)
T ss_pred CCccchhhhhcccceeeEecHhHHHHHHHhCccHHH
Confidence 668899999999999999999999999999998544
No 21
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.48 E-value=5.6e-13 Score=149.01 Aligned_cols=132 Identities=19% Similarity=0.328 Sum_probs=123.6
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
.+.+++.++|+|+.|++++++.|.+.+...+|.+|++|+.-|.+.+++|+|.+|.|++...+ |+ ++..+..|+.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--g~--v~~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--GE--VLDRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--Ce--eeeeeccCcccc
Confidence 46789999999999999999999999999999999999999999999999999999997644 54 468999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhh
Q 003116 507 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRIL 562 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~ 562 (846)
-.+++++.+-...+.|.+|+.||.||++.|.++++++|.|++++....+.|++.+.
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~ 135 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIA 135 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999999999999999999755
No 22
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.46 E-value=1.5e-12 Score=119.90 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhh--cCC
Q 003116 437 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--IGK 514 (846)
Q Consensus 437 lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll--~~~ 514 (846)
+|.+++++.++.+...++.+.+++|++|+++|++++++|+|.+|.+++...+.+|+......+.+|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999988766767777899999999999998 456
Q ss_pred CceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHH
Q 003116 515 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 550 (846)
Q Consensus 515 pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l 550 (846)
++..++.|.++|.++.++.+.|...+..++.+...+
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 788999999999999999999999999988765443
No 23
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.35 E-value=6e-12 Score=143.90 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=105.1
Q ss_pred cchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 426 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 426 ~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
.++.++++++++|++|++++++.+...++.+.|++|++|+++|++++++|+|++|.|+++..+.+|+ .++..+++|++|
T Consensus 4 ~~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge-~~l~~l~~Gd~f 82 (413)
T PLN02868 4 ESVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES-RPEFLLKRYDYF 82 (413)
T ss_pred HHHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc-EEEEEeCCCCEe
Confidence 4466789999999999999999999999999999999999999999999999999999998876663 456789999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCh
Q 003116 506 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 544 (846)
Q Consensus 506 GE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p 544 (846)
|+. +.+.++.++++|.++|+++.||++.|..+...++
T Consensus 83 G~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 83 GYG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred ehh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 985 7889999999999999999999999998876654
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.33 E-value=2.9e-12 Score=141.19 Aligned_cols=132 Identities=15% Similarity=0.256 Sum_probs=116.1
Q ss_pred cchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecC-CeEEEeeEeCCCCe
Q 003116 426 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR-NKHSLHPVFTHGSN 504 (846)
Q Consensus 426 ~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g-~~~~~~~~l~~G~~ 504 (846)
.+..++|+++|+|++||++.+..+++++....|.+|++|+++|+.++.+|+|.+|.|++...+.+ ++...+.++..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34568999999999999999999999999999999999999999999999999999999987754 33444678999999
Q ss_pred echhhhhcCCCceeEEEEcce-EEEEEEcHHHHHHHHhhChHHHHHHHHHHHHH
Q 003116 505 LGLYEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRSDPAVEDFLWQQSAIA 557 (846)
Q Consensus 505 fGE~sll~~~pr~~tv~A~~~-~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~r 557 (846)
|||-+++....|+++++|..+ ++|+.|+++.|.+++..-.++..+-+..-..+
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r~ 401 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEERR 401 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhhh
Confidence 999999999999999999998 99999999999999987777765555443333
No 25
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.09 E-value=6.8e-11 Score=134.27 Aligned_cols=137 Identities=23% Similarity=0.252 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhhHHhhhhhhhcchhhhcccccccccCchh-HHHHHHHHHHHHHHHHHHHHHhHHHhhhcC-CC----CC
Q 003116 6 FLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNS-WGYLILLYIFVQVSRLFVVGTLYPVLRNFG-YG----LE 79 (846)
Q Consensus 6 ~~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~-~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~-~~----~~ 79 (846)
.=.|..+++.+|++||+++|+.+-. .. .+... ..++++..+.|+++|++.||+++.++|..+ .+ ++
T Consensus 319 kh~f~~lsflAEtfIF~Y~Gl~~f~----~~----k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~ 390 (575)
T KOG1965|consen 319 KHFFRTLSFLAETFIFIYLGLSAFD----FQ----KHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLID 390 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhc----cc----ceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccC
Confidence 3356656666789999999985543 11 12233 467899999999999999999999988554 34 78
Q ss_pred cceeeeeeecc-chhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHH
Q 003116 80 WKEAIILVWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 156 (846)
Q Consensus 80 ~r~~~vl~wgG-LRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~ 156 (846)
.+++.+|+|+| |||||++|||+-...+. ++..++.++-.+..||++|+++.|-++.|+++.|........+
T Consensus 391 ~~~q~~~~w~g~lRGAvs~ALa~~~~~~~------~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 391 DKYQVIMWWAGGLRGAVSFALALGDFTDS------PHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred hHHhhHhHhhhhhhHHHHHHHHhhhcccc------ccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 99999999999 99999999998554331 2113566777777799999999999999999999987665543
No 26
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.5e-10 Score=123.08 Aligned_cols=123 Identities=22% Similarity=0.332 Sum_probs=90.7
Q ss_pred chhhHHHHHHHHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHh-HHHhhhcCCCCCc
Q 003116 2 HCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTL-YPVLRNFGYGLEW 80 (846)
Q Consensus 2 ~~~s~~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l-~p~l~~~~~~~~~ 80 (846)
+.++|++.. ++|+++|+.+.+.-+ .......+++....++++|.+.||.. .|+ +.+|
T Consensus 271 dG~twlaQI--------~MFlvLGLLvtPsql--------~~iavPailL~l~mifvaRP~aV~l~l~Pf------rf~~ 328 (574)
T COG3263 271 DGLAWLAQI--------LMFLVLGLLVTPSQL--------LPIAIPAILLSLWMIFVARPLAVFLGLIPF------RFNR 328 (574)
T ss_pred ccHHHHHHH--------HHHHHHHHhcCHhhh--------hHhhHHHHHHHHHHHHHHhHHHHHHhhccc------ccCc
Confidence 446677777 999999998765111 01223345666777899999988853 343 5799
Q ss_pred ceeeeeeeccchhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCc
Q 003116 81 KEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLS 153 (846)
Q Consensus 81 r~~~vl~wgGLRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s 153 (846)
++...++|.|+||||++.+|.. |... ..+ ...++.=.++-||++|++|||+|+||..+++++..++
T Consensus 329 ~Ek~fvSWvGLRGAv~IilAif-pm~a----gle--na~l~FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 329 REKLFVSWVGLRGAVPIILAIF-PMMA----GLE--NARLFFNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred cchheeehhhcccchhhhHhhh-HHhc----CCc--cceEEeehhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 9999999999999999999974 4332 233 2344444667799999999999999999999997655
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-09 Score=116.77 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=105.0
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
..++|.++|.+..|...+...+++....+.|++|+.|+.+|+.++.+|+|.+|.|.+.... +| +.+ .++.|++|||
T Consensus 238 y~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyfge 313 (368)
T KOG1113|consen 238 YEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYFGE 313 (368)
T ss_pred hhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhhcch
Confidence 3578999999999999999999999999999999999999999999999999999998776 33 333 8999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChH
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPA 545 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~ 545 (846)
.+++.+.|+.++|.|.+...|..+++..|+.++.-.-+
T Consensus 314 ~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 314 LALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred HHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 99999999999999999999999999999999976554
No 28
>PRK05326 potassium/proton antiporter; Reviewed
Probab=98.88 E-value=3.8e-09 Score=125.61 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=91.3
Q ss_pred HHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccc
Q 003116 12 FTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL 91 (846)
Q Consensus 12 ~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGL 91 (846)
++..++.+.|+++|+.+....+. ...|..+++..+.++++|+++++.... .++++||++++++|+|+
T Consensus 275 l~~l~~~~~Fv~lGl~~~~~~l~--------~~~~~~l~i~~~l~~vaR~l~v~l~~~-----~~~~~~~e~~~i~~~g~ 341 (562)
T PRK05326 275 LAWLAQIGMFLVLGLLVTPSRLL--------DIALPALLLALFLILVARPLAVFLSLL-----PFRFNLREKLFISWVGL 341 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCCHhhhheeeeecc
Confidence 34445789999999988653221 112333444456678999998875432 34789999999999999
Q ss_pred hhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHH
Q 003116 92 RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 155 (846)
Q Consensus 92 RGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~ 155 (846)
||+|++++|. +|... ..+. .+.+...++.+|++|+++||+|+|++.|++++..+++.
T Consensus 342 RG~v~i~lA~-~~~~~----~~~~--~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 342 RGAVPIVLAT-FPMMA----GLPN--AQLIFNVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred hhHHHHHHHH-HHHHc----CCCc--hhhhhhhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 9999999997 45432 2331 34555677789999999999999999999999876544
No 29
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.67 E-value=8.7e-08 Score=106.92 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=135.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--hCCcchhhHhhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCCCHh
Q 003116 367 VLHVVKTRQVTYSVLNHLIDYIQNLEK--VGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPS 444 (846)
Q Consensus 367 i~~~~ktr~~~~~vL~~~~e~i~~L~~--~GlIde~E~~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~Ls~e 444 (846)
+.+.+|-.+++..+-++..+|+-.-|. .|+-.++-..-.+++...++--.+ -+..+..+|.|+--++.
T Consensus 493 VReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHL----------NRKVFnEHpaFRLASDG 562 (971)
T KOG0501|consen 493 VREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHL----------NRKVFNEHPAFRLASDG 562 (971)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeec----------chhhhccCcceeeccch
Confidence 456778888999999999999877775 444444332223333333322222 24678899999999999
Q ss_pred hHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcC--CCceeEEEE
Q 003116 445 VREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIG--KPYMSDMVT 522 (846)
Q Consensus 445 ~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~--~pr~~tv~A 522 (846)
-+..|+-.+......||+.||+.|+..|.++||++|.+++...+ .++..++.||+||..-.=.. ....+.|+|
T Consensus 563 CLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRA 637 (971)
T KOG0501|consen 563 CLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRA 637 (971)
T ss_pred hHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999998765 33589999999998733222 235678999
Q ss_pred cceEEEEEEcHHHHHHHHhhChHHHHHHHHHH
Q 003116 523 DSVVLCFFIESDKILSILRSDPAVEDFLWQQS 554 (846)
Q Consensus 523 ~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l 554 (846)
++.|.+..|.++.+.+.++-+.+|...+-+++
T Consensus 638 LTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 638 LTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred hhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 99999999999999999988888777666554
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.57 E-value=9.1e-08 Score=111.75 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=99.1
Q ss_pred HHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEE
Q 003116 448 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 527 (846)
Q Consensus 448 ~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ 527 (846)
.+--.+....+.+|+.+|++||..|++|+|++|.++......+|+..++..++.||.+|+..++++.||..|+.|+.+++
T Consensus 503 ~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSe 582 (1158)
T KOG2968|consen 503 KLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSE 582 (1158)
T ss_pred hhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehh
Confidence 34445668889999999999999999999999999988776666665678999999999999999999999999999999
Q ss_pred EEEEcHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 003116 528 CFFIESDKILSILRSDPAVEDFLWQQSAIALS 559 (846)
Q Consensus 528 ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~ 559 (846)
+..||..-|..+..++|.+..++.+.+++++.
T Consensus 583 lariPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 583 LARIPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred hhhccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 99999999999999999988777777666664
No 31
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=98.13 E-value=6.1e-06 Score=98.83 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=90.6
Q ss_pred HHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccc
Q 003116 12 FTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL 91 (846)
Q Consensus 12 ~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGL 91 (846)
+..++|.++|+++|..++...+..... ....|..+++..++++++|..+++++.+++ +...+|++.++++|.|+
T Consensus 296 ie~LLn~~lFVlLGa~L~~~~l~~~~l---~~~~w~~ilLaL~LifVrRPpaVlll~~li---~~~~s~rErlFigWFGp 369 (810)
T TIGR00844 296 IDVLLNYAYFVYLGSILPWKDFNNGDI---GLDVWRLIILSLVVIFLRRIPAVLILKPLI---PDIKSWREAMFIGHFGP 369 (810)
T ss_pred HHHHHHHHHHHHHHHhhCHhhcccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCCHHHHHHheeecc
Confidence 444559999999999998754421101 124577788888888999988888766643 23468999999999999
Q ss_pred hhHHHHHHhhhhcccCC--CCC------ccccc------ccceehhhhhhHHHhhhhhccccHHHHHHhcCCCC
Q 003116 92 RGAVALSLSLSVKRSSG--GSS------LITSE------TGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDK 151 (846)
Q Consensus 92 RGAVsLALALsvp~~~~--~~~------~~~~~------~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~ 151 (846)
||+.++-.++..-.... .+. +.|.. .-..+.-++..+|++|.+|-|++.++++=.-.+..
T Consensus 370 RGIGSIyyl~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~lg~~~~~ 443 (810)
T TIGR00844 370 IGVGAVFAAILSKSQLESHLTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIMLGRYLNT 443 (810)
T ss_pred ccHHHHHHHHHHHHhhhcccCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHHhccccCc
Confidence 99988765554322211 000 01110 12345556677999999999999999976655543
No 32
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.72 E-value=0.00058 Score=69.89 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=116.2
Q ss_pred HHHhhcCeEEEEcCCCEE-ecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcce
Q 003116 447 EPLELSTKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSV 525 (846)
Q Consensus 447 ~~L~~~~~~~~~~kGe~I-~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~ 525 (846)
+.|....+...+++|..+ +........+|+|.+|.|.+.. + ++ .++.+..+..+||....+.+....+..+|.++
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~-d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-E-EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-c-CC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 445566678899999997 6555555789999999999943 2 23 44567888899999887777777789999999
Q ss_pred EEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhH------HHHhhccHHHHHHHHHhccccccccCCcEEEecCc
Q 003116 526 VLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLP------QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH 599 (846)
Q Consensus 526 ~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~------~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~ 599 (846)
|+++.||.++|.++++++. +|+.++.-++..+.. ++...-++..+|..+.+ +..++..
T Consensus 92 c~~~~i~~~~~~~iie~~~-----LW~~~~~~l~~~~~~l~~rd~~l~g~~sY~~IR~~L~e---L~~~~e~-------- 155 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-----LWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLS---MIDWNEE-------- 155 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH---HHhCCHH--------
Confidence 9999999999999998755 677776666653211 11112334444433321 1111110
Q ss_pred EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCcccccc
Q 003116 600 CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSF 647 (846)
Q Consensus 600 ~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~ 647 (846)
+ .-.+. ..+.|..-..|||+...+.|.+|..-|.+.++-
T Consensus 156 -~----R~~I~----v~~YIq~RT~LSRS~ImkILs~LKkGgYIei~r 194 (207)
T PRK11832 156 -L----RSRIG----VMNYIHQRTRISRSVVAEVLAALRKGGYIEMNK 194 (207)
T ss_pred -H----Hhhcc----HHHHHHHhccccHHHHHHHHHHHhcCCCEEEec
Confidence 0 00011 124455567789999999999999888777766
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.61 E-value=0.00025 Score=83.82 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=104.7
Q ss_pred ccchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCe
Q 003116 425 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 504 (846)
Q Consensus 425 ~~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~ 504 (846)
.+.+..+|+++..| ..| ..-++..++....+..|++|++.|++.+.+|++.+|..+++..+.+|++.++..+.+|+.
T Consensus 90 ~~eil~~L~~i~~~-EkP--~fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~ 166 (1158)
T KOG2968|consen 90 QPEILYMLSAIRIL-EKP--VFLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGS 166 (1158)
T ss_pred chHHHHHHHHhHhh-ccc--eeeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCc
Confidence 34455556655555 111 112234677788899999999999999999999999999999888788888899999976
Q ss_pred echh-hh---hcCCC---ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHh
Q 003116 505 LGLY-EV---LIGKP---YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 561 (846)
Q Consensus 505 fGE~-sl---l~~~p---r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l 561 (846)
|--. ++ +.+.| +...++|.++|.+..+|...|+.....+|.-...+.+....|+-+.
T Consensus 167 ~tSllSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~v 230 (1158)
T KOG2968|consen 167 FTSLLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRV 230 (1158)
T ss_pred hHhHHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHh
Confidence 6543 44 34555 4567899999999999999999999999998888888887777663
No 34
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=97.43 E-value=2.6e-05 Score=88.31 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=21.6
Q ss_pred HHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccc-h
Q 003116 14 RHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-R 92 (846)
Q Consensus 14 ~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGL-R 92 (846)
.+++.+.|+++|+.+....+. +....|..++++++.++++|++.++...+.. +++||+.+.++|++. |
T Consensus 266 ~~~~~lfF~~iG~~~~~~~l~------~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 334 (380)
T PF00999_consen 266 GFFIPLFFVFIGMSLDFSSLF------NSPSVIILVLLLLIAILLGKFIGVYLASRLF-----GIPWKEALFIGLGMLPR 334 (380)
T ss_dssp --------------------------------------------------------------------HHHHTTTTSS--
T ss_pred HHHhhHHhhhhcccccccccc------cchhhhhhHHHHHHHHHHhhhceeehhhhhc-----ccccchhHHHHHhhcCc
Confidence 455889999999999853331 0245667788888888999999998877653 789999999999999 9
Q ss_pred hHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHh
Q 003116 93 GAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHL 146 (846)
Q Consensus 93 GAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~ 146 (846)
|++++++|....... ... +.....+..++++|.+++|++++++++|
T Consensus 335 g~~~l~la~~~~~~~-----~~~---~~~~~~~~~~vl~t~ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 335 GEVSLALALIALNLG-----IIS---EQMFTIIIAAVLLTIIIAGIILSPLLRK 380 (380)
T ss_dssp HHHHHHHHHHHHH-----------------------------------------
T ss_pred cHHHHHHHHHHHhcC-----CCC---HHHHHHheeeeeeHHHHHHHHHHHHhcC
Confidence 999999998877651 221 2236677789999999999999999876
No 35
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.33 E-value=0.0077 Score=58.14 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=86.2
Q ss_pred CCCHhhHHHHhhc-CeEEEEcCCCEEecCCCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhh-----hc
Q 003116 440 ELPPSVREPLELS-TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV-----LI 512 (846)
Q Consensus 440 ~Ls~e~l~~L~~~-~~~~~~~kGe~I~~eGd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sl-----l~ 512 (846)
+.|..+...++.+ .......+|+.-.-||.. .|.+-++++|.++++..+ +. +..+.|-+++.--.. -.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g----~f-LH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG----RF-LHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC----Ee-eEeecccccccChhhhccccCC
Confidence 4688889999988 677889999999888875 599999999999998753 22 334445444443322 24
Q ss_pred CCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 003116 513 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 559 (846)
Q Consensus 513 ~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~ 559 (846)
+.....|++|.++|..+..+++.+..++..+|-+..-+-.-++.-++
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~ 135 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIA 135 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999766544444433333
No 36
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.37 E-value=0.004 Score=71.46 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=85.7
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEE-EEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEI-MKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~-~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
.+.+|+.+.|-|.+++-.....|+..+... .-.+|.+|...|+.-+.||+|++|.|++...+ |+. ..+.-|+.|
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd--Gk~---e~l~mGnSF 352 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD--GKR---EELKMGNSF 352 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC--Cce---EEeeccccc
Confidence 345788999999999999999998877643 33599999999999999999999999998865 433 245579999
Q ss_pred chhhhhcCCCceeEE-EEcceEEEEEEcHHHHHHHHhh
Q 003116 506 GLYEVLIGKPYMSDM-VTDSVVLCFFIESDKILSILRS 542 (846)
Q Consensus 506 GE~sll~~~pr~~tv-~A~~~~~ll~I~~~~f~~ll~~ 542 (846)
|...-....-....+ +-+.||+..+|...+|-+++..
T Consensus 353 G~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 353 GAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 976544332222222 2357899999999999988754
No 37
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.59 E-value=0.22 Score=57.90 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=76.4
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
+..+.|++...|++|-...+..+...++...++...++|+.|+.+..||++++|.|-+.. ..+-|-.+||
T Consensus 34 N~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----------qi~mp~~~fg 103 (1283)
T KOG3542|consen 34 NVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----------QIYMPYGCFG 103 (1283)
T ss_pred hHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec----------ceecCccccc
Confidence 345678889999999999999999999999999999999999999999999999998742 1233555666
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEE
Q 003116 507 LYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
-- +|..|.+++-.+++++.+.+
T Consensus 104 kr---~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 104 KR---TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred cc---cccccccceeeecccceeee
Confidence 53 46678999999999999998
No 38
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=84.91 E-value=0.19 Score=42.84 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=40.7
Q ss_pred cchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 613 GLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 613 ~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-++++ ++..++++|.++++.|+.|+..|++.... .++.+.|.++|+
T Consensus 29 lt~~~-iA~~~g~sr~tv~r~l~~l~~~g~I~~~~------------~~i~I~d~~~L~ 74 (76)
T PF13545_consen 29 LTQEE-IADMLGVSRETVSRILKRLKDEGIIEVKR------------GKIIILDPERLE 74 (76)
T ss_dssp SSHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESSHHHHH
T ss_pred CCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEEcC------------CEEEECCHHHHh
Confidence 34645 69999999999999999999999999888 899999999876
No 39
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=76.53 E-value=2.5 Score=46.07 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=77.6
Q ss_pred HHHhhHHhhhhhhhcchhhhcccccccccCchh-HHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccc
Q 003116 13 TRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNS-WGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL 91 (846)
Q Consensus 13 ~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~-~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGL 91 (846)
-..+|..-|++.|-.+|-.-+... ..+.. |-.+++-...+++-|.-.+|.+.|+.-. =.+|||++.+.|=|.
T Consensus 297 D~lls~sfF~yfGaiipwsqFn~s----~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPd---ikswkEALFvGhFGP 369 (467)
T KOG4505|consen 297 DLLLSLSFFLYFGAIIPWSQFNLS----VEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPD---IKSWKEALFVGHFGP 369 (467)
T ss_pred HHHHHHHHHHHhccccchhhcCCc----ccCchHHHHHHHHHHHHHhcccceEEEeccCCcc---hhhHHHHHHhccCCC
Confidence 345588999999998885322111 12233 4444444445555566677777776421 248999999999999
Q ss_pred hhHHHHHHhhhhcccCCC--C-Ccccc------cccceehhhhhhHHHhhhhhccccHHHHHHhcC
Q 003116 92 RGAVALSLSLSVKRSSGG--S-SLITS------ETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLD 148 (846)
Q Consensus 92 RGAVsLALALsvp~~~~~--~-~~~~~------~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lg 148 (846)
=|.=++-.|+.--..... + ...++ ..-+.+.=++..+|+.+.+|-|.+.+.+.-+-.
T Consensus 370 IGVgAly~allar~~le~~ep~~~i~~~e~~~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl~kr 435 (467)
T KOG4505|consen 370 IGVGALYYALLARKELETLEPEKSIYESETVFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTLGKR 435 (467)
T ss_pred ccHHHHHHHHHHHhhhccCCcccccCCccccchhhhhhhhhhhHHHHHHHHHhccchhhHHHHHhh
Confidence 988777766643211100 0 00110 011223345667889999999999998765433
No 40
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=70.36 E-value=35 Score=40.61 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhhHhhhhHHHHHHH
Q 003116 335 DSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 413 (846)
Q Consensus 335 ~~~i~~~vi~e~~~~~~~A~~~L~~lr~~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~GlIde~E~~~L~~~L~~~l 413 (846)
++++.+.+.++++.+..+++...+.-..+. ....-..+.+.+.+++.+|+.+.+++++|.++++-+.++.+.+|-+-
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~e 520 (525)
T TIGR00831 444 VEPVARELLPELDARIEELRADGEEKIRSG--MGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLKE 520 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcccchhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence 345566677777765555433322211111 01111244688899999999999999999999998877777775543
No 41
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=66.74 E-value=9.4 Score=46.23 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=49.3
Q ss_pred HHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeee-ecc
Q 003116 12 FTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILV-WSG 90 (846)
Q Consensus 12 ~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~-wgG 90 (846)
|..++-++-|+.+|+.+....+ ...|..++++.+++++++++.+++...+ ++.+|++.+.++ +-+
T Consensus 266 f~~lll~lFFi~vGm~id~~~l---------~~~~~~il~~~~~~l~~K~~~~~~~~~~-----~g~~~~~al~~g~~L~ 331 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVL---------YTHLLWVLISVVVLVAVKGLVLYLLARL-----YGLRSSERMQFAGVLS 331 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHh
Confidence 4455678889999988765322 2345566666777889999988876543 356777766444 335
Q ss_pred chhHHHHHHhh
Q 003116 91 LRGAVALSLSL 101 (846)
Q Consensus 91 LRGAVsLALAL 101 (846)
-||-+++.++-
T Consensus 332 ~~Gef~~vl~~ 342 (601)
T PRK03659 332 QGGEFAFVLFS 342 (601)
T ss_pred ccccHHHHHHH
Confidence 67766665543
No 42
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=66.70 E-value=13 Score=32.79 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=52.8
Q ss_pred hhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccc
Q 003116 568 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEA 644 (846)
Q Consensus 568 e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~ 644 (846)
..++.++++.+. +......|.+|+.+..+++ .+++|.+|.++.....++ + +...-..+..-+..|...
T Consensus 3 ~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~------g--~~~~~~~~~~g~~~g~~~ 73 (115)
T cd00038 3 SGLDDEELEELA-DALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDED------G--REQIVGFLGPGDLFGELA 73 (115)
T ss_pred ccCCHHHHHHHH-hhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCC------C--cEEEEEecCCccCcChHH
Confidence 345666777666 4567778999999977765 789999999886433211 0 000000011112222221
Q ss_pred c-ccccccceeeeecceEEEEEeccccc
Q 003116 645 V-SFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 645 ~-~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. .-........+.+.+++..++.+.|+
T Consensus 74 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 101 (115)
T cd00038 74 LLGNGPRSATVRALTDSELLVLPRSDFR 101 (115)
T ss_pred HhcCCCCCceEEEcCceEEEEEeHHHHH
Confidence 1 11122344555588888888887775
No 43
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=64.43 E-value=14 Score=37.76 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=56.3
Q ss_pred hhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccccC
Q 003116 568 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 568 e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
+.++.+++..+. +......|++|+.|..+++ .+++|++|.++.....+ +.+ ...+.|. +-.|
T Consensus 6 ~~~~~~~~~~l~-~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g---------~~~g 73 (211)
T PRK11753 6 KPQTDPTLEWFL-SHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQG---------DFIG 73 (211)
T ss_pred CCCCHHHHHHHH-hhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCC---------CEEe
Confidence 357777888777 4677889999999987765 88999999988542211 110 1111121 2222
Q ss_pred ccccccc--cccceeeeecceEEEEEecccccc
Q 003116 642 VEAVSFS--HQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 642 ~~~~~~~--~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
...+-.. .....+.+.+++.+..++.+.|..
T Consensus 74 ~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~ 106 (211)
T PRK11753 74 ELGLFEEGQERSAWVRAKTACEVAEISYKKFRQ 106 (211)
T ss_pred ehhhccCCCCceEEEEEcCcEEEEEEcHHHHHH
Confidence 2211111 123345566789999999888763
No 44
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=53.70 E-value=43 Score=27.44 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=40.6
Q ss_pred EEEcCCCEEecCCCCCC-eEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 456 IMKLSGVTLYREGSKPS-GIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 456 ~~~~kGe~I~~eGd~~~-~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
..++||+..-..-.+.. .+++|++|.+.+.. + ++. ..+.+|+.+=. =.+.++.......+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~--~~~---~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D--GER---VELKPGDAIYI---PPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T--TEE---EEEETTEEEEE---ETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c--cEE---eEccCCEEEEE---CCCCeEEEEECCCCCEEEEEE
Confidence 46778887655555555 89999999999983 2 322 46778876411 123344444444455555543
No 45
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=51.52 E-value=73 Score=30.76 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=47.3
Q ss_pred CeEEEEcCCCEEecCCCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+.+|...-..-.+ ...+++|++|...+...+.+++......+.+|+.|=.- .+.++.......+++.++.+
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip---~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP---QGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC---CCCEEEEEcCCCCCEEEEEE
Confidence 345567788876544433 57899999999999876653333334678899876332 22232222223455666665
Q ss_pred cHH
Q 003116 532 ESD 534 (846)
Q Consensus 532 ~~~ 534 (846)
+..
T Consensus 109 ~~~ 111 (146)
T smart00835 109 NTN 111 (146)
T ss_pred ecC
Confidence 443
No 46
>PLN02868 acyl-CoA thioesterase family protein
Probab=50.46 E-value=29 Score=39.92 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++..++..+. .......|++|+.|..+++ .+++|++|.++.....++--.....+.+ ...|+.
T Consensus 14 ~~F~~L~~~~l~~l~-~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~---Gd~fG~----- 84 (413)
T PLN02868 14 PLLQRLPSSSLKKIA-EVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKR---YDYFGY----- 84 (413)
T ss_pred cccccCCHHHHHHHH-HhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCC---CCEeeh-----
Confidence 467778888888877 4777889999999988876 8899999999864432110000111111 123331
Q ss_pred ccccccccccceeeeecceEEEEEecccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
....-.+ .....+.+++.+..++.+.|..
T Consensus 85 -~l~~~~~-~~~~~A~~d~~v~~ip~~~~~~ 113 (413)
T PLN02868 85 -GLSGSVH-SADVVAVSELTCLVLPHEHCHL 113 (413)
T ss_pred -hhCCCCc-ccEEEECCCEEEEEEcHHHHhh
Confidence 1112223 3333455778888888877653
No 47
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=49.08 E-value=43 Score=34.88 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=33.0
Q ss_pred hccHHHHHHHHHhcc-ccccccCCcEEEecCc---EEEEEEeceEeee
Q 003116 569 KLTMQDMRALIAERS-KMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 612 (846)
Q Consensus 569 ~l~~~dlr~l~~~~~-~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~ 612 (846)
.++.+++..+.. .. ....|++|+.+..+++ .+|+|.+|.++..
T Consensus 23 ~l~~~~l~~L~~-~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~ 69 (235)
T PRK11161 23 TLNEHELDQLDN-IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSY 69 (235)
T ss_pred CCCHHHHHHHHH-hhhhceeecCCCEeECCCCCcceEEEEeeceEEEE
Confidence 577778877663 33 3457999999988876 8899999998754
No 48
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=47.32 E-value=29 Score=43.71 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeec-cchhHHHHHHhh
Q 003116 45 SWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSL 101 (846)
Q Consensus 45 ~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wg-GLRGAVsLALAL 101 (846)
.|..++++.++.+++.++..++...+ ++++|++++.+++. --||.+.|.++-
T Consensus 349 ~~~~~~~liv~a~~gK~~g~~l~a~~-----~g~~~~eal~lG~lm~~kG~~~Lii~~ 401 (832)
T PLN03159 349 TWGLLVLVIIMASAGKIMGTIIIAFF-----YTMPFREGITLGFLMNTKGLVEMIVLN 401 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 34444444555566666655544322 47889988877654 458888887654
No 49
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=45.87 E-value=39 Score=35.27 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=38.2
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeee
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 612 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~ 612 (846)
..|..++..++..+. .......|++|+.|..+++ .+++|++|.++..
T Consensus 13 ~~f~~L~~~~~~~l~-~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~ 62 (236)
T PRK09392 13 PLFADMADATFERLM-RGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELS 62 (236)
T ss_pred ccccCCCHHHHHHHH-hhcceeecCCCCEEEeCCCccceEEEEEeCEEEEE
Confidence 466778888888876 4677789999999988776 7899999998864
No 50
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=44.08 E-value=52 Score=40.09 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=43.8
Q ss_pred HHHHhhHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeecc-
Q 003116 12 FTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSG- 90 (846)
Q Consensus 12 ~~~~ln~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgG- 90 (846)
|..++-++-|+.+|+.+....+ ...|..++.+.++.++++++.++....+ .+++|++++.++++=
T Consensus 269 f~~lll~lFFi~vG~~id~~~l---------~~~~~~il~~~~~~~~~K~~~~~~~~~~-----~g~~~~~a~~~gl~L~ 334 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTL---------LENPLRILILLLGFLAIKIAMLWLLARP-----LGVPRKQRRWFAVLLG 334 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHh
Confidence 3344567888888887754221 1234445555566788899988876544 255677666665531
Q ss_pred chhHHHHHH
Q 003116 91 LRGAVALSL 99 (846)
Q Consensus 91 LRGAVsLAL 99 (846)
-+|-.++.+
T Consensus 335 ~~Gef~~vl 343 (621)
T PRK03562 335 QGGEFAFVV 343 (621)
T ss_pred ccccHHHHH
Confidence 145555444
No 51
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=41.37 E-value=82 Score=33.07 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=45.5
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh----hhhcCCC---------ceeE
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY----EVLIGKP---------YMSD 519 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~----sll~~~p---------r~~t 519 (846)
+....+.+|+..-..-..-+.+.+++.|.+.+...+ ..||++ +.|.+.| ..++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g--------------~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~ 96 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG--------------STFGEIGTRMSVFERKPPDSVYVPAGSAFS 96 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc--------------chHhhcccccccccCCCCCeEEecCCceEE
Confidence 456667799988777777788899999999986532 223322 3444433 5678
Q ss_pred EEEcceEEEEEE
Q 003116 520 MVTDSVVLCFFI 531 (846)
Q Consensus 520 v~A~~~~~ll~I 531 (846)
+.|.+++++..-
T Consensus 97 vtA~t~~~vAvC 108 (270)
T COG3718 97 VTATTDLEVAVC 108 (270)
T ss_pred EEeecceEEEEE
Confidence 999999877664
No 52
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=40.61 E-value=73 Score=27.93 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=32.3
Q ss_pred hccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeee
Q 003116 569 KLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 612 (846)
Q Consensus 569 ~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~ 612 (846)
.++...++.+. .......|++|+.+...++ .+++|.+|.++..
T Consensus 4 ~l~~~~~~~l~-~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~ 49 (120)
T smart00100 4 NLDAEELRELA-DALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVY 49 (120)
T ss_pred CCCHHHHHHHH-HhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEE
Confidence 45666666655 4666678999999977765 7899999998764
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=40.33 E-value=1e+02 Score=30.68 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=42.0
Q ss_pred EEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHH
Q 003116 463 TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 534 (846)
Q Consensus 463 ~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~ 534 (846)
..++..+ .+.+|++++|.+.+...+.|+.. ...+++|++|=-- .|. +++-++..+|.++.|.+.
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~flvP---~gv--pHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKVTEEGKRE--DVPIREGDIFLLP---PHV--PHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEEEcCCcEE--EEEECCCCEEEeC---CCC--CcccccCCCcEEEEEEeC
Confidence 3366544 79999999999999876644322 2578899887322 122 334455677888887654
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=38.27 E-value=1.7e+02 Score=27.76 Aligned_cols=68 Identities=7% Similarity=-0.067 Sum_probs=40.2
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEE-EEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWT-SKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~-~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
....++||..+-..-.....+++|++|.+++. ..+ ++. ..+.+||++--- .+.+ ..+.+.+++.++++
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g~~---~~L~aGD~i~~~---~~~~--H~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--GEV---HPIRPGTMYALD---KHDR--HYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--CEE---EEeCCCeEEEEC---CCCc--EEEEcCCCEEEEEE
Confidence 34567888755332222246999999999997 321 222 478899986321 2333 33444477777665
No 55
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=37.21 E-value=1.5e+02 Score=24.30 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhc
Q 003116 222 TNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASN 269 (846)
Q Consensus 222 ~~l~~~R~r~L~~er~~~~~~~~~G~Is~~~~~~L~~~ld~~lD~~~~ 269 (846)
..+.++...++...++.+-...+.|.|+++-+..+...+|...+....
T Consensus 7 ~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 7 KELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999988766543
No 56
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=36.98 E-value=61 Score=27.41 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.1
Q ss_pred ccccCCcEEEecCc---EEEEEEeceEeeecc
Q 003116 586 TTCLRGEIIEIPYH---CIGFLLEGFIKTHGL 614 (846)
Q Consensus 586 ~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~ 614 (846)
..|++|+.|..+++ .+++|++|.++....
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~ 33 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSI 33 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEec
Confidence 36888999888776 889999999886543
No 57
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=35.49 E-value=63 Score=22.76 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCcchhhHhhhhHH
Q 003116 383 HLIDYIQNLEKVGLLEEKEMLHLHDA 408 (846)
Q Consensus 383 ~~~e~i~~L~~~GlIde~E~~~L~~~ 408 (846)
...+.++.++..|.|+++|+......
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667889999999999998765443
No 58
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=33.46 E-value=19 Score=28.54 Aligned_cols=15 Identities=47% Similarity=1.125 Sum_probs=13.5
Q ss_pred ccccCCCCCchhhhh
Q 003116 697 REHGNLMSWPEHFYK 711 (846)
Q Consensus 697 ~~~~~~~~~~~~~~~ 711 (846)
-++|.|..||+.|+-
T Consensus 28 d~~G~l~~WP~GFFD 42 (52)
T PF12476_consen 28 DEDGRLSNWPEGFFD 42 (52)
T ss_pred CCCCCCccCCCchhh
Confidence 489999999999985
No 59
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=32.40 E-value=1.4e+02 Score=23.54 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 003116 231 LLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDL 266 (846)
Q Consensus 231 ~L~~er~~~~~~~~~G~Is~~~~~~L~~~ld~~lD~ 266 (846)
+-.+..+++-++..+|.|+++.+..++...|..+..
T Consensus 11 lG~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999887754
No 60
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.15 E-value=1.9e+02 Score=36.61 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecch---hhhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQ---EELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~---eeli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|+.++.+.+..++. ......|.+|+.|..+++ .+|+|.+|.|+..... |..+. .+.+ ...|++..
T Consensus 380 ~lF~~~s~~~l~~L~~-~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~---~l~~---Gd~FGE~~ 452 (823)
T PLN03192 380 YLFKGVSREILLLLVT-KMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVG---TLGC---GDIFGEVG 452 (823)
T ss_pred cchhcCCHHHHHHHHH-hhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeE---EccC---CCEecchH
Confidence 3677788777777663 556668999999988765 7899999999864321 11111 1111 22444433
Q ss_pred ccCccccccccccceeeeecceEEEEEecccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
. +....+..+..+.+.+.+..++.+.|..
T Consensus 453 ~-----l~~~p~~~t~ra~~~s~ll~l~~~~f~~ 481 (823)
T PLN03192 453 A-----LCCRPQSFTFRTKTLSQLLRLKTSTLIE 481 (823)
T ss_pred H-----hcCCCCCCeEEEcccEEEEEEEHHHHHH
Confidence 1 1222344556666888888898888753
No 61
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.08 E-value=89 Score=37.47 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=36.5
Q ss_pred hHHhhhhhhhcchhhhcccccccccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeec-cchhHH
Q 003116 17 CCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAV 95 (846)
Q Consensus 17 n~lIFillGl~i~~~il~~~~~~~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wg-GLRGAV 95 (846)
-.+-|+.+|+.+....+ ...+..++++.++.++++++.++....+ ++.+||+.+.++.+ --||..
T Consensus 282 ~plFFv~~G~~~d~~~l---------~~~~~~~~~~~~~~~v~K~~~~~~~~~~-----~g~~~~~a~~~gl~l~~~Gef 347 (558)
T PRK10669 282 AVLFFVSVGMLFDPMIL---------IQQPLAVLATLAIIVFGKSLAAFFLVRL-----FGHSRRTALTIAASLAQIGEF 347 (558)
T ss_pred HHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHhcccch
Confidence 45566666666543211 1123333444455677888877755443 35567766655433 124555
Q ss_pred HHHHh
Q 003116 96 ALSLS 100 (846)
Q Consensus 96 sLALA 100 (846)
++.++
T Consensus 348 ~lii~ 352 (558)
T PRK10669 348 AFILA 352 (558)
T ss_pred HHHHH
Confidence 55543
No 62
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=31.68 E-value=89 Score=30.38 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003116 224 LRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQ 258 (846)
Q Consensus 224 l~~~R~r~L~~er~~~~~~~~~G~Is~~~~~~L~~ 258 (846)
-++.+..-+.+.|..+.++.++|.|+..+++.|-.
T Consensus 91 ~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~ 125 (150)
T COG2147 91 SKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYR 125 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 34567888889999999999999999999999543
No 63
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=30.99 E-value=39 Score=38.58 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCeechhhhhcCCCceeEEEEcc-eEEEEEEcHHHHHHHHhhC
Q 003116 501 HGSNLGLYEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSD 543 (846)
Q Consensus 501 ~G~~fGE~sll~~~pr~~tv~A~~-~~~ll~I~~~~f~~ll~~~ 543 (846)
.|+-||-+++....|+.++++.-+ +|..+.+++.+|..++.+.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 489999999999999999977655 5999999999999998764
No 64
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.97 E-value=1.3e+02 Score=37.21 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeec
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 613 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~ 613 (846)
+|+.++..=++.++ .+.....|.+|+.|..+++ +++||+.|.++...
T Consensus 426 LF~~md~~~L~al~-~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~ 475 (727)
T KOG0498|consen 426 LFAGMDDGLLDALC-SRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT 475 (727)
T ss_pred hhhcCCHHHHHHHH-HHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE
Confidence 67667665455544 5677778999999999987 89999999987543
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.38 E-value=1.4e+02 Score=30.28 Aligned_cols=68 Identities=9% Similarity=-0.001 Sum_probs=43.4
Q ss_pred cCCC-EEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHH
Q 003116 459 LSGV-TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 534 (846)
Q Consensus 459 ~kGe-~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~ 534 (846)
-+|+ .-++- ++.+.+|++++|.+.+...+.|+.. ...+.+|++|=-- .|. +++-++..+|.++.|.+.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~fllP---~gv--pHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR--DVPIREGEMFLLP---PHV--PHSPQREAGSIGLVIERK 110 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee--eEEECCCCEEEeC---CCC--CcCCccCCCeEEEEEEeC
Confidence 4663 44444 5679999999999999887643312 2478899887322 222 233345677888888543
No 66
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=27.30 E-value=71 Score=34.34 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred hHHhhhhhhhcchhhhccccccc-ccCchhHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccchhHH
Q 003116 17 CCFFIFCSGVVIAEGILGNDKIF-QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAV 95 (846)
Q Consensus 17 n~lIFillGl~i~~~il~~~~~~-~~~~~~~~~~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGLRGAV 95 (846)
=|++|+++++.+..++....... ++.+..++++++...+-.+.--. ...+++.+|.. +..+..-.|-||
T Consensus 230 iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~----VLalI~~fGA~------~aatvTTaRKav 299 (367)
T KOG1582|consen 230 IGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVF----VLALIKLFGAL------IAATVTTARKAV 299 (367)
T ss_pred ccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHH----HHHHHHHhchh------HHHHHHHhHhHH
Confidence 47999999999887666533211 11233556555443333222111 11222333322 122335579999
Q ss_pred HHHHhhhhc
Q 003116 96 ALSLSLSVK 104 (846)
Q Consensus 96 sLALALsvp 104 (846)
|+.|++.+-
T Consensus 300 Ti~lSfllF 308 (367)
T KOG1582|consen 300 TILLSFLLF 308 (367)
T ss_pred HHHHHHHHH
Confidence 999999774
No 67
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=26.91 E-value=1e+02 Score=31.97 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=45.7
Q ss_pred ccccccccCCcEEEecCc---EEEEEEeceEeeecch---hhhccCCccCCccchhhhhhhccccCccccccccccceee
Q 003116 582 RSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQ---EELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYL 655 (846)
Q Consensus 582 ~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~---eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ 655 (846)
......|++|+.|..+++ .+++|++|.++..... ++.+... +.| ...|+... ++ ..-++ .....
T Consensus 30 ~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~--~~~---g~~~G~~~---~~-~~~~~-~~~~~ 99 (226)
T PRK10402 30 DTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDF--FAA---PCFIGEIE---LI-DKDHE-TKAVQ 99 (226)
T ss_pred hhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeee--cCC---CCeEEeeh---hh-cCCCC-CccEE
Confidence 466678999999988876 7899999998864322 1211111 112 11233222 11 11122 23344
Q ss_pred eecceEEEEEeccccc
Q 003116 656 VETRARVIIFDIAAFE 671 (846)
Q Consensus 656 ve~~~~i~~~d~~~~~ 671 (846)
+.+++.+..++.+.|.
T Consensus 100 A~~~~~i~~i~~~~~~ 115 (226)
T PRK10402 100 AIEECWCLALPMKDCR 115 (226)
T ss_pred EeccEEEEEEEHHHHH
Confidence 5577888889988775
No 68
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=24.65 E-value=1.9e+02 Score=30.12 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=46.7
Q ss_pred cCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEc--ceEEEE
Q 003116 452 STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTD--SVVLCF 529 (846)
Q Consensus 452 ~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~--~~~~ll 529 (846)
......+.+|..+-.....+..+.+|++|.+. +.+ ..+.+|+|+=. ......+.+|. ++|.|+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~------g~y~~Gd~i~~-----p~~~~H~p~a~~~~~Cicl 192 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET------GVYGVGDFEEA-----DGSVQHQPRTVSGGDCLCL 192 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC------CccCCCeEEEC-----CCCCCcCcccCCCCCeEEE
Confidence 34677888999999999999999999999963 211 35678888622 11223445555 458888
Q ss_pred EEcHH
Q 003116 530 FIESD 534 (846)
Q Consensus 530 ~I~~~ 534 (846)
.+--.
T Consensus 193 ~v~da 197 (215)
T TIGR02451 193 AVLDA 197 (215)
T ss_pred EEecC
Confidence 87543
No 69
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.48 E-value=2.8e+02 Score=24.27 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=42.5
Q ss_pred cCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEE
Q 003116 452 STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFF 530 (846)
Q Consensus 452 ~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~ 530 (846)
.+....+.+|..+=...-.+....+|++|.... .++ .+.+|+++=+ ..-...+..+.+.|.++.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~------~~~~G~~~~~-----p~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDG------RYGAGDWLRL-----PPGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTC------EEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCc------cCCCCeEEEe-----CCCCccccCcCCCEEEEE
Confidence 345677889988887777778888999999884 112 3467777522 223456777888888875
No 70
>COG3329 Predicted permease [General function prediction only]
Probab=24.27 E-value=2e+02 Score=31.52 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=11.4
Q ss_pred HHhhhhhhhcchh
Q 003116 18 CFFIFCSGVVIAE 30 (846)
Q Consensus 18 ~lIFillGl~i~~ 30 (846)
++.|++.|+.++.
T Consensus 19 ~llFf~~Gmlia~ 31 (372)
T COG3329 19 TLLFFILGMLIAA 31 (372)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998874
No 71
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=24.19 E-value=1.2e+02 Score=31.67 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=26.8
Q ss_pred hccccccccCCcEEEecCc---EEEEEEeceEeeec
Q 003116 581 ERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 613 (846)
Q Consensus 581 ~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~ 613 (846)
.......|++|+.|..+++ .+|+|++|.++...
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~ 71 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYR 71 (230)
T ss_pred ceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEE
Confidence 3466778999999988876 88999999998653
No 72
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=23.52 E-value=1.1e+02 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=27.4
Q ss_pred EcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 458 KLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 458 ~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
..+|..-..- +.+.+.+|++|.|.+... +|+. ..+++||.|
T Consensus 14 ~~pg~~~~~~--~~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~ 54 (74)
T PF05899_consen 14 CTPGKFPWPY--PEDEFFYVLEGEVTITDE--DGET---VTFKAGDAF 54 (74)
T ss_dssp EECEEEEEEE--SSEEEEEEEEEEEEEEET--TTEE---EEEETTEEE
T ss_pred ECCceeEeeC--CCCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEE
Confidence 3455543332 228888999999999754 4543 467888876
No 73
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.71 E-value=2.5e+02 Score=31.86 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=35.7
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
....+.+|...-..-.....+.+|++|.+++...+.+|+.. ...+.+||+|
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~-~~~L~~GD~~ 120 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY-IDDVGAGDLW 120 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE-EeEECCCCEE
Confidence 34566777765332234567999999999999877555443 2478999986
No 74
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=1.4e+02 Score=33.17 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCcceeeeeeeccchhHHHHHHhhhhc
Q 003116 49 LILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK 104 (846)
Q Consensus 49 ~l~l~v~v~~~R~l~v~~l~p~l~~~~~~~~~r~~~vl~wgGLRGAVsLALALsvp 104 (846)
.++..++++++=++++|+++|-..+.| .+-++. |.-|-+++.++|+|-
T Consensus 191 ~vl~~~fvl~tlaivLFPLWP~~mR~g-------vyY~si-g~~gfl~~IlvLaIv 238 (372)
T KOG2927|consen 191 QVLGVLFVLVTLAIVLFPLWPRRMRQG-------VYYLSI-GAGGFLAFILVLAIV 238 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCcHHHhcc-------eeeeec-chhHHHHHHHHHHHH
Confidence 344444466666788889988755432 222232 666778878887663
No 75
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=21.09 E-value=1.7e+02 Score=29.18 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=48.5
Q ss_pred hccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCcccccc--ccccceee
Q 003116 581 ERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSF--SHQGSCYL 655 (846)
Q Consensus 581 ~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~--~~~~~~~~ 655 (846)
.......|++|+.+..+++ .+|++.+|.++.....++ + +...-..++.-+..|...+-. ++.++..+
T Consensus 21 ~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~------G--~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a 92 (214)
T COG0664 21 LKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED------G--REIILGFLGPGDFFGELALLGGDPRSASAVA 92 (214)
T ss_pred hhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCC------C--cEEEEEEecCCchhhhHHHhcCCCccceEEE
Confidence 3466678999999987765 789999999886543211 0 111111122222333332211 35555555
Q ss_pred eecceEEEEEecccccc
Q 003116 656 VETRARVIIFDIAAFEA 672 (846)
Q Consensus 656 ve~~~~i~~~d~~~~~~ 672 (846)
+ +++.+..++.+.|+.
T Consensus 93 ~-~~~~~~~~~~~~~~~ 108 (214)
T COG0664 93 L-TDVEVLEIPRKDFLE 108 (214)
T ss_pred c-ceEEEEEecHHHHHH
Confidence 5 458999999888874
No 76
>COG2118 DNA-binding protein [General function prediction only]
Probab=20.38 E-value=2.4e+02 Score=26.33 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC----cchhhHhhhhHHHHHH
Q 003116 352 DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL----LEEKEMLHLHDAVQSD 412 (846)
Q Consensus 352 ~A~~~L~~lr~~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~Gl----Ide~E~~~L~~~L~~~ 412 (846)
+|+..|..++...|+++++++..-+ .|...|- |++.+...+...|..+
T Consensus 53 eAreRL~~irLvRPe~AeavE~qLi-------------~LaqtGri~~~I~e~~lk~IL~~i~~~ 104 (116)
T COG2118 53 EARERLARVRLVRPELAEAVENQLI-------------QLAQTGRITHKIDEEELKEILERISPQ 104 (116)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHH-------------HHHHcCCCCCCCCHHHHHHHHHHHhHH
Confidence 5788889999999999999887544 3567775 6667666666555554
Done!