Query 003116
Match_columns 846
No_of_seqs 693 out of 3397
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zyb_A Transcription regulator 99.9 1.4E-22 4.8E-27 211.2 13.6 222 420-671 8-232 (232)
2 4ev0_A Transcription regulator 99.9 4.8E-22 1.7E-26 203.8 17.3 209 432-671 1-209 (216)
3 2ptm_A Hyperpolarization-activ 99.9 3.2E-21 1.1E-25 195.8 20.4 182 364-559 14-196 (198)
4 3dkw_A DNR protein; CRP-FNR, H 99.9 3.8E-22 1.3E-26 206.2 12.7 219 426-671 5-224 (227)
5 3d0s_A Transcriptional regulat 99.9 7.2E-22 2.5E-26 204.5 14.2 217 429-671 5-223 (227)
6 3dv8_A Transcriptional regulat 99.9 5.4E-22 1.8E-26 204.1 12.9 212 430-672 3-216 (220)
7 3fx3_A Cyclic nucleotide-bindi 99.9 1.4E-21 4.7E-26 203.7 14.8 217 426-671 7-223 (237)
8 3e97_A Transcriptional regulat 99.9 1.1E-21 3.7E-26 203.7 12.7 217 427-672 3-222 (231)
9 3bpz_A Potassium/sodium hyperp 99.9 2E-20 6.8E-25 190.7 20.1 183 363-560 14-197 (202)
10 3iwz_A CAP-like, catabolite ac 99.8 1.7E-20 5.7E-25 194.2 19.3 214 428-667 9-229 (230)
11 3of1_A CAMP-dependent protein 99.8 2.3E-20 7.9E-25 194.9 17.3 222 427-671 4-228 (246)
12 3ryp_A Catabolite gene activat 99.8 5.4E-20 1.8E-24 187.7 18.6 208 436-668 2-210 (210)
13 2gau_A Transcriptional regulat 99.8 1.3E-20 4.6E-25 195.6 12.9 213 434-672 14-227 (232)
14 1o5l_A Transcriptional regulat 99.8 1.9E-20 6.6E-25 192.3 13.6 208 434-672 3-211 (213)
15 3shr_A CGMP-dependent protein 99.8 2.4E-19 8.1E-24 193.7 21.0 225 428-671 37-265 (299)
16 3tnp_B CAMP-dependent protein 99.8 4.5E-20 1.6E-24 209.5 14.7 231 428-671 143-380 (416)
17 2oz6_A Virulence factor regula 99.8 2.7E-19 9.1E-24 182.1 18.8 201 441-667 1-206 (207)
18 3kcc_A Catabolite gene activat 99.8 2E-19 6.8E-24 190.9 17.6 206 437-668 53-260 (260)
19 3ukn_A Novel protein similar t 99.8 1.9E-19 6.3E-24 184.8 16.1 181 364-560 18-202 (212)
20 3dn7_A Cyclic nucleotide bindi 99.8 2.9E-19 9.9E-24 180.2 17.2 187 429-638 6-193 (194)
21 4din_B CAMP-dependent protein 99.8 1E-19 3.5E-24 204.2 15.1 226 428-671 128-356 (381)
22 2fmy_A COOA, carbon monoxide o 99.8 4.1E-20 1.4E-24 190.4 10.1 210 429-672 3-215 (220)
23 2qcs_B CAMP-dependent protein 99.8 4.3E-19 1.5E-23 190.6 18.5 226 428-671 37-265 (291)
24 3mdp_A Cyclic nucleotide-bindi 99.8 3.3E-19 1.1E-23 169.8 13.2 132 429-560 5-139 (142)
25 1ft9_A Carbon monoxide oxidati 99.8 1E-19 3.6E-24 187.8 9.5 207 431-672 1-211 (222)
26 3e6c_C CPRK, cyclic nucleotide 99.8 2.6E-19 8.9E-24 188.4 11.6 213 432-672 11-224 (250)
27 2pqq_A Putative transcriptiona 99.8 1.8E-18 6.3E-23 165.8 16.0 132 429-560 4-135 (149)
28 2z69_A DNR protein; beta barre 99.8 2.4E-18 8.1E-23 166.2 15.5 135 426-560 8-143 (154)
29 3gyd_A CNMP-BD protein, cyclic 99.8 8.5E-18 2.9E-22 169.3 19.8 134 427-560 36-169 (187)
30 3la7_A Global nitrogen regulat 99.8 1.3E-18 4.6E-23 182.4 13.7 205 443-672 30-240 (243)
31 2bgc_A PRFA; bacterial infecti 99.7 6.9E-18 2.4E-22 176.3 14.4 208 439-672 2-217 (238)
32 3idb_B CAMP-dependent protein 99.7 3.4E-18 1.2E-22 167.3 10.6 125 428-553 36-160 (161)
33 1o7f_A CAMP-dependent RAP1 gua 99.7 3.9E-17 1.3E-21 187.7 20.0 119 428-547 40-160 (469)
34 1vp6_A CNBD, cyclic-nucleotide 99.7 2.6E-17 9E-22 156.1 12.7 125 429-560 10-134 (138)
35 4f8a_A Potassium voltage-gated 99.7 8.4E-17 2.9E-21 156.5 15.1 121 429-554 26-148 (160)
36 3ocp_A PRKG1 protein; serine/t 99.7 7.2E-17 2.5E-21 153.7 14.2 118 428-550 21-138 (139)
37 3b02_A Transcriptional regulat 99.7 3.4E-17 1.2E-21 165.5 12.0 184 456-672 2-186 (195)
38 3pna_A CAMP-dependent protein 99.7 1.3E-16 4.3E-21 155.0 13.0 119 428-551 36-154 (154)
39 4ava_A Lysine acetyltransferas 99.7 3.7E-16 1.3E-20 171.4 17.2 131 428-560 11-141 (333)
40 4f7z_A RAP guanine nucleotide 99.7 9.6E-16 3.3E-20 192.3 20.6 118 428-546 40-159 (999)
41 3shr_A CGMP-dependent protein 99.7 2.5E-16 8.4E-21 170.0 12.1 134 429-562 156-290 (299)
42 2zcw_A TTHA1359, transcription 99.6 1.9E-16 6.5E-21 160.8 9.5 189 450-672 2-193 (202)
43 1wgp_A Probable cyclic nucleot 99.6 4.4E-17 1.5E-21 154.5 3.1 119 429-548 5-134 (137)
44 2qcs_B CAMP-dependent protein 99.6 1.4E-14 4.9E-19 155.2 15.9 125 430-554 157-282 (291)
45 3of1_A CAMP-dependent protein 99.6 6.2E-15 2.1E-19 153.5 12.6 115 429-547 124-238 (246)
46 2d93_A RAP guanine nucleotide 99.6 3.2E-15 1.1E-19 141.5 9.1 113 428-545 14-128 (134)
47 3tnp_B CAMP-dependent protein 99.6 2.5E-15 8.4E-20 170.5 9.2 133 429-561 266-404 (416)
48 4din_B CAMP-dependent protein 99.5 1.3E-14 4.6E-19 162.5 10.7 129 430-558 248-377 (381)
49 1o7f_A CAMP-dependent RAP1 gua 99.4 2.7E-13 9.4E-18 155.6 12.3 121 428-552 335-457 (469)
50 3beh_A MLL3241 protein; transm 99.4 2.4E-14 8.4E-19 158.8 -0.3 124 430-560 228-351 (355)
51 3cf6_E RAP guanine nucleotide 99.3 3.5E-12 1.2E-16 153.0 12.4 115 428-546 30-146 (694)
52 4f7z_A RAP guanine nucleotide 99.2 2.6E-11 8.9E-16 152.1 13.1 110 429-542 336-447 (999)
53 2kbv_A Sodium/hydrogen exchang 97.8 2.5E-06 8.5E-11 57.0 -0.6 25 81-105 2-26 (28)
54 1wgp_A Probable cyclic nucleot 86.5 1.5 5.1E-05 39.7 7.3 102 566-671 13-123 (137)
55 3mdp_A Cyclic nucleotide-bindi 85.8 1.9 6.3E-05 39.2 7.6 98 565-671 12-116 (142)
56 2gau_A Transcriptional regulat 83.7 1.3 4.4E-05 44.4 5.9 97 564-671 15-117 (232)
57 2z69_A DNR protein; beta barre 82.8 2 6.9E-05 39.5 6.5 97 565-671 18-120 (154)
58 3idb_B CAMP-dependent protein 82.2 1.1 3.9E-05 42.0 4.5 96 565-671 44-144 (161)
59 3bpz_A Potassium/sodium hyperp 81.7 5.5 0.00019 38.9 9.6 94 565-671 78-174 (202)
60 1vp6_A CNBD, cyclic-nucleotide 81.1 3 0.0001 37.6 6.9 92 565-671 17-111 (138)
61 3ocp_A PRKG1 protein; serine/t 79.7 3.2 0.00011 37.7 6.5 94 565-671 29-125 (139)
62 2pqq_A Putative transcriptiona 79.3 3.7 0.00013 37.3 6.9 96 565-671 11-112 (149)
63 2ptm_A Hyperpolarization-activ 79.2 4 0.00014 39.7 7.5 95 565-671 77-174 (198)
64 3dkw_A DNR protein; CRP-FNR, H 78.5 3.2 0.00011 41.1 6.6 99 565-671 15-117 (227)
65 4f8a_A Potassium voltage-gated 77.8 2.8 9.4E-05 38.9 5.6 95 565-671 33-131 (160)
66 1zyb_A Transcription regulator 75.6 3.9 0.00013 40.9 6.3 97 565-671 24-128 (232)
67 3iwz_A CAP-like, catabolite ac 74.9 5.1 0.00018 39.6 7.0 97 565-671 17-119 (230)
68 3pna_A CAMP-dependent protein 74.8 5.3 0.00018 37.0 6.7 94 565-671 44-140 (154)
69 2d93_A RAP guanine nucleotide 73.9 3.9 0.00013 36.9 5.3 94 566-671 23-120 (134)
70 3gyd_A CNMP-BD protein, cyclic 73.2 2 6.7E-05 41.8 3.3 97 566-671 46-146 (187)
71 3fx3_A Cyclic nucleotide-bindi 72.3 5.5 0.00019 39.7 6.5 96 565-671 17-118 (237)
72 3dn7_A Cyclic nucleotide bindi 71.0 4.3 0.00015 39.1 5.1 96 566-671 14-115 (194)
73 3dv8_A Transcriptional regulat 70.0 6.7 0.00023 38.4 6.4 98 565-671 9-112 (220)
74 3ukn_A Novel protein similar t 69.4 6 0.00021 38.9 6.0 95 565-671 81-179 (212)
75 4ev0_A Transcription regulator 68.7 5 0.00017 39.3 5.2 96 565-671 5-106 (216)
76 2oz6_A Virulence factor regula 68.4 8.8 0.0003 37.1 6.9 91 571-671 2-101 (207)
77 3ryp_A Catabolite gene activat 67.7 7.2 0.00025 37.9 6.1 98 567-671 4-104 (210)
78 4ava_A Lysine acetyltransferas 65.2 4.4 0.00015 43.0 4.2 99 565-672 19-120 (333)
79 3rns_A Cupin 2 conserved barre 61.6 27 0.00092 35.0 9.1 68 453-531 39-106 (227)
80 2ozj_A Cupin 2, conserved barr 61.3 32 0.0011 29.9 8.6 66 455-531 42-107 (114)
81 3e97_A Transcriptional regulat 57.6 5.8 0.0002 39.4 3.2 96 565-671 12-113 (231)
82 3fjs_A Uncharacterized protein 56.7 39 0.0013 29.7 8.4 66 454-530 39-104 (114)
83 3kcc_A Catabolite gene activat 55.5 15 0.0005 37.4 6.0 93 569-671 56-154 (260)
84 3cf6_E RAP guanine nucleotide 54.5 8.9 0.0003 45.6 4.6 128 530-671 5-137 (694)
85 3d0s_A Transcriptional regulat 54.3 6.5 0.00022 38.9 3.0 95 566-671 13-113 (227)
86 3ibm_A Cupin 2, conserved barr 51.1 63 0.0022 30.6 9.3 87 454-549 59-156 (167)
87 3lwc_A Uncharacterized protein 48.7 1.1E+02 0.0038 27.1 10.0 44 455-505 44-87 (119)
88 2pfw_A Cupin 2, conserved barr 48.6 86 0.0029 26.9 9.3 68 453-531 36-103 (116)
89 1yhf_A Hypothetical protein SP 48.5 75 0.0026 27.3 8.8 67 454-531 43-109 (115)
90 2fmy_A COOA, carbon monoxide o 47.3 9.4 0.00032 37.5 2.8 90 566-671 11-103 (220)
91 3jzv_A Uncharacterized protein 47.1 44 0.0015 31.8 7.5 45 455-505 57-101 (166)
92 2bgc_A PRFA; bacterial infecti 46.9 27 0.00091 34.8 6.2 45 569-613 3-51 (238)
93 3e6c_C CPRK, cyclic nucleotide 44.3 9.6 0.00033 38.4 2.4 92 569-671 19-113 (250)
94 3kgz_A Cupin 2 conserved barre 41.8 55 0.0019 30.8 7.1 45 455-505 48-92 (156)
95 1ft9_A Carbon monoxide oxidati 40.6 7.2 0.00025 38.5 0.7 90 566-671 7-99 (222)
96 3b02_A Transcriptional regulat 38.1 45 0.0016 31.8 6.1 75 586-671 2-82 (195)
97 2bnm_A Epoxidase; oxidoreducta 38.0 91 0.0031 29.9 8.4 70 455-531 121-196 (198)
98 1dgw_A Canavalin; duplicated s 37.9 37 0.0013 32.7 5.3 51 453-505 43-93 (178)
99 2q1z_B Anti-sigma factor CHRR, 37.8 61 0.0021 31.7 7.0 65 452-531 126-192 (195)
100 1o5l_A Transcriptional regulat 35.3 22 0.00075 34.7 3.3 92 570-671 10-107 (213)
101 3rns_A Cupin 2 conserved barre 35.0 98 0.0034 30.7 8.2 67 454-531 156-223 (227)
102 4e2g_A Cupin 2 conserved barre 33.6 1.2E+02 0.004 26.5 7.7 47 453-505 43-89 (126)
103 1o5u_A Novel thermotoga mariti 30.0 2.5E+02 0.0086 24.0 9.0 44 455-505 35-78 (101)
104 3es1_A Cupin 2, conserved barr 29.8 56 0.0019 31.4 5.0 70 453-531 81-150 (172)
105 1v70_A Probable antibiotics sy 29.2 1.2E+02 0.004 25.1 6.6 46 454-505 31-77 (105)
106 2gu9_A Tetracenomycin polyketi 29.1 1.1E+02 0.0039 25.7 6.7 46 454-505 24-72 (113)
107 3h8u_A Uncharacterized conserv 27.9 1E+02 0.0035 26.9 6.3 71 453-531 41-112 (125)
108 1j58_A YVRK protein; cupin, de 27.4 1.5E+02 0.0052 31.8 8.8 75 453-531 259-334 (385)
109 2d5f_A Glycinin A3B4 subunit; 26.9 1.2E+02 0.0042 34.1 8.0 60 446-505 362-422 (493)
110 1fxz_A Glycinin G1; proglycini 26.7 99 0.0034 34.8 7.1 54 452-505 339-393 (476)
111 1yfu_A 3-hydroxyanthranilate-3 26.6 1.9E+02 0.0064 27.9 7.9 63 463-533 48-111 (174)
112 3c3v_A Arachin ARAH3 isoform; 26.3 1.1E+02 0.0039 34.6 7.5 59 447-505 368-427 (510)
113 3la7_A Global nitrogen regulat 25.3 67 0.0023 31.8 5.0 33 581-613 38-76 (243)
114 3d0j_A Uncharacterized protein 24.5 2.1E+02 0.0072 26.5 7.5 64 466-534 45-110 (140)
115 4i4a_A Similar to unknown prot 24.1 2.6E+02 0.0089 24.2 8.3 79 454-541 37-117 (128)
116 3fz3_A Prunin; TREE NUT allerg 22.7 1.7E+02 0.0058 33.2 8.0 59 447-505 390-449 (531)
117 4axo_A EUTQ, ethanolamine util 22.4 2.5E+02 0.0085 26.2 7.9 51 470-531 83-133 (151)
118 2oa2_A BH2720 protein; 1017534 22.3 2.3E+02 0.0077 25.7 7.7 51 455-505 47-98 (148)
119 2f4p_A Hypothetical protein TM 22.3 1.9E+02 0.0065 26.4 7.1 70 454-531 51-120 (147)
120 2xp1_A SPT6; transcription, IW 21.6 80 0.0027 30.6 4.4 38 432-475 11-48 (178)
121 2qnk_A 3-hydroxyanthranilate 3 21.4 1.7E+02 0.0059 30.3 7.0 69 457-533 35-106 (286)
122 2e9q_A 11S globulin subunit be 20.9 1.9E+02 0.0066 32.2 8.0 60 446-505 317-377 (459)
123 2i45_A Hypothetical protein; n 20.1 1.4E+02 0.0047 25.3 5.3 69 457-535 34-102 (107)
No 1
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.88 E-value=1.4e-22 Score=211.19 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=180.4
Q ss_pred CCCCCccchHHHHhcCCCCCCCCHhhHHHHhhc--CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEee
Q 003116 420 PPLVKFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP 497 (846)
Q Consensus 420 p~~~~~~~~~~~L~~~~lF~~Ls~e~l~~L~~~--~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~ 497 (846)
|+..++|+...+++++|+|.+|++++++.+... ++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++.
T Consensus 8 ~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~ 87 (232)
T 1zyb_A 8 HHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIE 87 (232)
T ss_dssp CHHHHHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEE
T ss_pred hhHhHHHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEE
Confidence 444446677889999999999999999999998 999999999999999999999999999999999887666666678
Q ss_pred EeCCCCeechhhhhcCCC-ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHH
Q 003116 498 VFTHGSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR 576 (846)
Q Consensus 498 ~l~~G~~fGE~sll~~~p-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr 576 (846)
.+++|++||+.+++.+.+ +.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... .....+...+..
T Consensus 88 ~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~l~~~~~~ 165 (232)
T 1zyb_A 88 QIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY--SRLWDEPTLDLK 165 (232)
T ss_dssp EEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH--HHTTSCCCCSHH
T ss_pred EccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCHH
Confidence 999999999999999988 99999999999999999999999999999999999999988887643 222334434444
Q ss_pred HHHHhccccccccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeee
Q 003116 577 ALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLV 656 (846)
Q Consensus 577 ~l~~~~~~~~~y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~v 656 (846)
.+++ .......... + |.+...-++++ |+...+++|.+.++.++.|+..|++....
T Consensus 166 ~Rl~-~~L~~l~~~~------~--------~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~l~~~glI~~~~--------- 220 (232)
T 1zyb_A 166 SKII-RFFLSHCEKP------Q--------GEKTFKVKMDD-LARCLDDTRLNISKTLNELQDNGLIELHR--------- 220 (232)
T ss_dssp HHHH-HHHHTTCSSS------S--------SCEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSCEEET---------
T ss_pred HHHH-HHHHHHHhhc------C--------CeEEecCCHHH-HHHHhCCChhHHHHHHHHHHHCCCEEecC---------
Confidence 4443 1111111111 0 12222334645 58889999999999999999999998888
Q ss_pred ecceEEEEEeccccc
Q 003116 657 ETRARVIIFDIAAFE 671 (846)
Q Consensus 657 e~~~~i~~~d~~~~~ 671 (846)
+++.+.|.++|+
T Consensus 221 ---~~i~I~d~~~L~ 232 (232)
T 1zyb_A 221 ---KEILIPDAQKLL 232 (232)
T ss_dssp ---TEEEESCGGGGC
T ss_pred ---CEEEEeChHHcC
Confidence 899999998874
No 2
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.88 E-value=4.8e-22 Score=203.82 Aligned_cols=209 Identities=15% Similarity=0.145 Sum_probs=171.9
Q ss_pred HhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhh
Q 003116 432 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 511 (846)
Q Consensus 432 L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll 511 (846)
|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999998777777778899999999999999
Q ss_pred cCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCC
Q 003116 512 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRG 591 (846)
Q Consensus 512 ~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~g 591 (846)
.+.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... +....+...+...+++ .........|
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rl~-~~L~~~~~~~ 157 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREAD--LELDLLSFEEARNRVA-YALLKLLRQG 157 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH-HHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999887644 2233344445554443 1111111222
Q ss_pred cEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 592 EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 592 e~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. .+...-++++ ++...+++|.+.++.+++|+..|++.... +++.+.|.++|+
T Consensus 158 ~---------------~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~~~L~ 209 (216)
T 4ev0_A 158 L---------------GPLFQIRHHE-LAALAGTSRETVSRVLHALAEEGVVRLGP------------GTVEVREAALLE 209 (216)
T ss_dssp C---------------CSEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESCHHHHH
T ss_pred C---------------ccCCCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecC------------CEEEEeCHHHHH
Confidence 0 1112223545 58888999999999999999999998877 899999999886
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.87 E-value=3.2e-21 Score=195.82 Aligned_cols=182 Identities=14% Similarity=0.226 Sum_probs=160.5
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhhH-hhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCCC
Q 003116 364 FPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELP 442 (846)
Q Consensus 364 ~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~GlIde~E~-~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~Ls 442 (846)
.-.+..+|+.++++..+..+.++|+++.|+....++.+. ..|+..+..++.... ..++++++|+|.+++
T Consensus 14 ~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~----------~~~~l~~~~~f~~l~ 83 (198)
T 2ptm_A 14 LKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYN----------CRDLVASVPFFVGAD 83 (198)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHH----------THHHHHHCGGGTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHH----------HHHHHhcCcchhcCC
Confidence 345679999999999999999999999998766776664 557888877776533 257899999999999
Q ss_pred HhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEE
Q 003116 443 PSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT 522 (846)
Q Consensus 443 ~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A 522 (846)
++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.|+.++++|
T Consensus 84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence 99999999999999999999999999999999999999999986 3344 3579999999999999999999999999
Q ss_pred cceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 003116 523 DSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 559 (846)
Q Consensus 523 ~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~ 559 (846)
.++|+++.|++++|.+++.++|.+...+.+.++.++.
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888887766654
No 4
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.87 E-value=3.8e-22 Score=206.19 Aligned_cols=219 Identities=14% Similarity=0.197 Sum_probs=178.9
Q ss_pred cchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 426 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 426 ~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
....++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++|
T Consensus 5 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 84 (227)
T 3dkw_A 5 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 84 (227)
T ss_dssp SSSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEE
T ss_pred hhHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEe
Confidence 45678999999999999999999999999999999999999999999999999999999988766666667899999999
Q ss_pred chhhhhcCCC-ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccc
Q 003116 506 GLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSK 584 (846)
Q Consensus 506 GE~sll~~~p-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~ 584 (846)
|+.+++.+.| +.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... .....+...+...+++ ...
T Consensus 85 G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~-~~L 161 (227)
T 3dkw_A 85 AEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI--DEIETLSLKNATHRVV-RYL 161 (227)
T ss_dssp SCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHH
T ss_pred eeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH-HHH
Confidence 9999999999 99999999999999999999999999999999999999998887643 2222344444444443 112
Q ss_pred cccccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEE
Q 003116 585 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664 (846)
Q Consensus 585 ~~~y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~ 664 (846)
...+... .++ .+.+...-++++ ++...+++|.+.++.++.|+..|++.... +++.+
T Consensus 162 ~~~~~~~-----~~~------~~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i 217 (227)
T 3dkw_A 162 LTLAAHA-----PGE------NCRVEIPVAKQL-VAGHLSIQPETFSRIMHRLGDEGIIHLDG------------REISI 217 (227)
T ss_dssp HHHHCSS-----SSS------CCCCCCCSCTHH-HHHHTTSCHHHHHHHHHHHHHHTSEEESS------------SCEEE
T ss_pred HHhhhhc-----CCC------CeEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCcEEecC------------CEEEE
Confidence 2222221 011 012223334645 58889999999999999999999998888 89999
Q ss_pred Eeccccc
Q 003116 665 FDIAAFE 671 (846)
Q Consensus 665 ~d~~~~~ 671 (846)
.|.++|+
T Consensus 218 ~d~~~L~ 224 (227)
T 3dkw_A 218 LDRERLE 224 (227)
T ss_dssp SCSTTTS
T ss_pred eCHHHHh
Confidence 9999886
No 5
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.87 E-value=7.2e-22 Score=204.48 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=174.6
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
.++++++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 56899999999999999999999999999999999999999999999999999999998877777777899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccc
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 588 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y 588 (846)
+++.+.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ..+..+
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~--~~L~~l 160 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNN--NLADLIFTDVPGRVA--KQLLQL 160 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHH--HHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH--HHHHHH
Confidence 9999999999999999999999999999999999999999999999988876442 222233333333332 111111
Q ss_pred cC--CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEe
Q 003116 589 LR--GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFD 666 (846)
Q Consensus 589 ~~--ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d 666 (846)
.. |.. . ++.. .+...-++++ ++...+++|.+.++.+++|+..|++.... .++.+.|
T Consensus 161 ~~~~~~~--~-~~~~------~i~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d 218 (227)
T 3d0s_A 161 AQRFGTQ--E-GGAL------RVTHDLTQEE-IAQLVGASRETVNKALADFAHRGWIRLEG------------KSVLISD 218 (227)
T ss_dssp HHHHEEE--E-TTEE------EEECCCCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESC
T ss_pred HHHhCCc--C-CCce------EEcCCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEecC------------CEEEEcC
Confidence 10 100 0 0100 1222234645 58889999999999999999999998888 8999999
Q ss_pred ccccc
Q 003116 667 IAAFE 671 (846)
Q Consensus 667 ~~~~~ 671 (846)
.++|+
T Consensus 219 ~~~L~ 223 (227)
T 3d0s_A 219 SERLA 223 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 6
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.86 E-value=5.4e-22 Score=204.06 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=172.3
Q ss_pred HHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCe--ech
Q 003116 430 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN--LGL 507 (846)
Q Consensus 430 ~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~--fGE 507 (846)
++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578899999999999999999999999999999999999999999999999999999887777777789999999 799
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
.+++.+.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+.+.+++ ..+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~Rl~--~~L~~ 158 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMW--LIEQIMWKSLDKRVA--SFLLE 158 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHH--HHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH--HHHHH
Confidence 99999999999999999999999999999999999999999999999888876442 222233333333332 11111
Q ss_pred ccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEec
Q 003116 588 CLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDI 667 (846)
Q Consensus 588 y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~ 667 (846)
+... .|.+...-++++ ++...+++|.+.++.+++|+..|++.... +++.+.|.
T Consensus 159 ~~~~--------------~~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i~d~ 211 (220)
T 3dv8_A 159 ETSI--------------EGTNELKITHET-IANHLGSHREVITRMLRYFQVEGLVKLSR------------GKITILDS 211 (220)
T ss_dssp HHHH--------------HTSSEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEET------------TEEEESCH
T ss_pred hhhh--------------cCCceecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEeCC------------CEEEEeCH
Confidence 1110 011122234545 58889999999999999999999998877 99999999
Q ss_pred ccccc
Q 003116 668 AAFEA 672 (846)
Q Consensus 668 ~~~~~ 672 (846)
++|+.
T Consensus 212 ~~L~~ 216 (220)
T 3dv8_A 212 KRLET 216 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98863
No 7
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.86 E-value=1.4e-21 Score=203.72 Aligned_cols=217 Identities=20% Similarity=0.190 Sum_probs=175.2
Q ss_pred cchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 426 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 426 ~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+...++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 45668899999999999999999999999999999999999999999999999999999998877777778899999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccc
Q 003116 506 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKM 585 (846)
Q Consensus 506 GE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~ 585 (846)
|+.+++.+.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ....
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~-~~L~ 163 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVA--QLEQLKAQTGAQRVA-EFLL 163 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHH-HHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999999999999998876442 222333333343333 1111
Q ss_pred ccccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEE
Q 003116 586 TTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIF 665 (846)
Q Consensus 586 ~~y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~ 665 (846)
...... ++ ...+...-++++ |+...+++|.+.++.++.|+..|+ .... +++.|.
T Consensus 164 ~~~~~~------~~------~~~~~l~~t~~~-iA~~lg~sr~tvsR~l~~L~~~gi-~~~~------------~~i~I~ 217 (237)
T 3fx3_A 164 ELCDCD------TG------ACEVTLPYDKML-IAGRLGMKPESLSRAFSRLKAAGV-TVKR------------NHAEIE 217 (237)
T ss_dssp HHCCC-----------------EEECCSCTHH-HHHHTTCCHHHHHHHHHHHGGGTE-ECCT------------TEEEES
T ss_pred HHhhhc------CC------CeEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCe-EeeC------------CEEEEc
Confidence 112110 00 011222333545 588899999999999999999996 5555 899999
Q ss_pred eccccc
Q 003116 666 DIAAFE 671 (846)
Q Consensus 666 d~~~~~ 671 (846)
|.++|+
T Consensus 218 d~~~L~ 223 (237)
T 3fx3_A 218 DIALLR 223 (237)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999986
No 8
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.86 E-value=1.1e-21 Score=203.75 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=174.4
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
+..++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||
T Consensus 3 ~~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 3 GRLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CCHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred hHHHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe
Confidence 45688999999999999999999999999999999999999999999999999999999988777777778999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHH-HHHHhcccc
Q 003116 507 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR-ALIAERSKM 585 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr-~l~~~~~~~ 585 (846)
+.+++.+.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... .+. ...+.. .+++ ..+
T Consensus 83 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~-~~~---~~~~~~~~Rl~--~~L 156 (231)
T 3e97_A 83 ETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLND-ELI---AFGQNTEAALT--HVF 156 (231)
T ss_dssp TTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-HHH---HHHHCHHHHHH--HHH
T ss_pred eHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-HHH---HhccChHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999998876442 221 222333 2222 111
Q ss_pred ccccC--CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEE
Q 003116 586 TTCLR--GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVI 663 (846)
Q Consensus 586 ~~y~~--ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~ 663 (846)
..+.. |. .+. ...+...-++++ |+...+++|.+.++.|+.|+..|++.... .++.
T Consensus 157 ~~~~~~~~~----~~~------~~~~~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~ 213 (231)
T 3e97_A 157 ANLYRQRLA----AGV------PQPEVLPLGTQD-IMARTSSSRETVSRVLKRLEAHNILEVSP------------RSVT 213 (231)
T ss_dssp HHHHHHHHH----HTC------SSTTEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECS------------SCEE
T ss_pred HHHHHhcCC----CCC------CceEecCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEecC------------CEEE
Confidence 11110 10 000 001222334645 58889999999999999999999999888 8999
Q ss_pred EEecccccc
Q 003116 664 IFDIAAFEA 672 (846)
Q Consensus 664 ~~d~~~~~~ 672 (846)
++|.++|+.
T Consensus 214 i~d~~~L~~ 222 (231)
T 3e97_A 214 LLDLAALEA 222 (231)
T ss_dssp ESCHHHHHH
T ss_pred EeCHHHHHH
Confidence 999998863
No 9
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.85 E-value=2e-20 Score=190.75 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=160.6
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhhH-hhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCC
Q 003116 363 NFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLREL 441 (846)
Q Consensus 363 ~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~GlIde~E~-~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~L 441 (846)
+.-.+..+|+.++++..+..+.++|+++.|+....++.+. ..|+..+..++.... ..++++++|+|.++
T Consensus 14 ~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~----------~~~~l~~~~~f~~l 83 (202)
T 3bpz_A 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFN----------CRKLVASMPLFANA 83 (202)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHH----------THHHHHTCHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHH----------HHHHHhcCCchhcC
Confidence 3345678999999999999999999999998666777664 557777777765432 25789999999999
Q ss_pred CHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEE
Q 003116 442 PPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMV 521 (846)
Q Consensus 442 s~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~ 521 (846)
+++.+..+...++.+.|++|++|+++|++++++|||.+|.|++.. .+|+. ..+++|++|||.+++.+.++.++++
T Consensus 84 ~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~ 158 (202)
T 3bpz_A 84 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE---MKLSDGSYFGEICLLTRGRRTASVR 158 (202)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC---EEEETTCEECHHHHHHCSBCSSEEE
T ss_pred CHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE---EEEcCCCEeccHHHhcCCCcccEEE
Confidence 999999999999999999999999999999999999999999974 33433 2689999999999999999999999
Q ss_pred EcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 522 TDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 522 A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
|.++|+++.|++++|.+++.++|.+...+.+.++.++..
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 159 ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred EeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888877765
No 10
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.7e-20 Score=194.23 Aligned_cols=214 Identities=10% Similarity=0.105 Sum_probs=160.5
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
....+++.++|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+
T Consensus 9 ~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 88 (230)
T 3iwz_A 9 VTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGE 88 (230)
T ss_dssp -------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred ehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999887777777889999999999
Q ss_pred hhhhcCC-CceeEEEEcceEEEEEEcHHHHHHHHhhC-----hHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHh
Q 003116 508 YEVLIGK-PYMSDMVTDSVVLCFFIESDKILSILRSD-----PAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAE 581 (846)
Q Consensus 508 ~sll~~~-pr~~tv~A~~~~~ll~I~~~~f~~ll~~~-----p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~ 581 (846)
.+++.+. |+.++++|.++|+++.||++.|.+++.++ |.+...+++.++.++..... ....+...+.+.+++
T Consensus 89 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~- 165 (230)
T 3iwz_A 89 MGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTR--KASRLAFLDVTDRIV- 165 (230)
T ss_dssp GGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCHHHHHH-
T ss_pred hhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-
Confidence 9999875 79999999999999999999999999999 99999999999988876432 222333334444443
Q ss_pred ccccccccC-CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecce
Q 003116 582 RSKMTTCLR-GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRA 660 (846)
Q Consensus 582 ~~~~~~y~~-ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~ 660 (846)
......... |. ... ++. +...-++++ ++...+++|.+.++.|+.|+..|++.... .
T Consensus 166 ~~L~~l~~~~~~-~~~-~~~--------~~~~lt~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~ 222 (230)
T 3iwz_A 166 RTLHDLSKEPEA-MSH-PQG--------TQLRVSRQE-LARLVGCSREMAGRVLKKLQADGLLHARG------------K 222 (230)
T ss_dssp HHHHHHTTSTTC-EEE-TTE--------EEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEET------------T
T ss_pred HHHHHHHHhhCC-CCC-CCc--------eecCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEECC------------C
Confidence 111111111 21 111 111 122234645 58889999999999999999999999888 8
Q ss_pred EEEEEec
Q 003116 661 RVIIFDI 667 (846)
Q Consensus 661 ~i~~~d~ 667 (846)
+|.++|.
T Consensus 223 ~i~i~d~ 229 (230)
T 3iwz_A 223 TVVLYGT 229 (230)
T ss_dssp EEEEEC-
T ss_pred EEEEeeC
Confidence 9999886
No 11
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.3e-20 Score=194.86 Aligned_cols=222 Identities=14% Similarity=0.198 Sum_probs=178.5
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
.+.++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++.. ++. +..+++|++||
T Consensus 4 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~---~~~--~~~~~~g~~fG 78 (246)
T 3of1_A 4 RLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN---DNK--VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST---TSC--CEEECTTCEEC
T ss_pred HHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC---CEE--EEecCCCCeee
Confidence 4567899999999999999999999999999999999999999999999999999999852 322 37899999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccc
Q 003116 507 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMT 586 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~ 586 (846)
|.+++.+.|+.++++|.++|.++.||++.|..++.++|.....++..+...+ ..+..++..++..+. ......
T Consensus 79 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~f~~l~~~~l~~l~-~~~~~~ 151 (246)
T 3of1_A 79 ELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM------PVLKSLTTYDRAKLA-DALDTK 151 (246)
T ss_dssp HHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHC------GGGTTCCHHHHHHHH-HTCEEE
T ss_pred hhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhC------hhhhcCCHHHHHHHH-HhhheE
Confidence 9999999999999999999999999999999999999988877766654443 256678888888776 467778
Q ss_pred cccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEE
Q 003116 587 TCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVI 663 (846)
Q Consensus 587 ~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~ 663 (846)
.|.+|+.|..+++ .+|+|.+|.++.....++ .+..-.....|++.+. ...-++.+++.++ +++.+.
T Consensus 152 ~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~------~~~~l~~g~~fGe~~~----~~~~~~~~~v~a~-~~~~~~ 220 (246)
T 3of1_A 152 IYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG------VINKLKDHDYFGEVAL----LNDLPRQATVTAT-KRTKVA 220 (246)
T ss_dssp EECTTCEEECTTSBCCEEEEEEECEEEEEETTTE------EEEEEETTCEECHHHH----HHTCBCSSEEEES-SCEEEE
T ss_pred EeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc------eEEEcCCCCcccHHHH----hCCCCcccEEEEC-CCEEEE
Confidence 9999999988765 889999999987543321 1111222335555541 1234455555554 789999
Q ss_pred EEeccccc
Q 003116 664 IFDIAAFE 671 (846)
Q Consensus 664 ~~d~~~~~ 671 (846)
.++.+.|.
T Consensus 221 ~i~~~~f~ 228 (246)
T 3of1_A 221 TLGKSGFQ 228 (246)
T ss_dssp EEEHHHHH
T ss_pred EEeHHHHH
Confidence 99998875
No 12
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.84 E-value=5.4e-20 Score=187.66 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=160.3
Q ss_pred CCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCC-
Q 003116 436 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK- 514 (846)
Q Consensus 436 ~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~- 514 (846)
++++.+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677899999999999999999999999999999999999999999999998877777778899999999999999988
Q ss_pred CceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCCcEE
Q 003116 515 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEII 594 (846)
Q Consensus 515 pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I 594 (846)
|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ .............
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~Rl~-~~L~~l~~~~~~~ 158 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSE--KVGNLAFLDVTGRIA-QTLLNLAKQPDAM 158 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHH-HHHHHHTTSTTCE
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH--HHHHHhhCCHHHHHH-HHHHHHHHhcCcC
Confidence 8999999999999999999999999999999999999999988876432 222233333333332 1111111111111
Q ss_pred EecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecc
Q 003116 595 EIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIA 668 (846)
Q Consensus 595 ~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~ 668 (846)
.. ++ .+...-++++ ++...+++|.+.++.|+.|+..|++..+. .++.++|.+
T Consensus 159 ~~-~~--------~~~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i~d~d 210 (210)
T 3ryp_A 159 TH-PD--------GMQIKITRQE-IGQIVGCSRETVGRILKMLEDQNLISAHG------------KTIVVYGTR 210 (210)
T ss_dssp EE-TT--------EEEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEET------------TEEEEEC--
T ss_pred CC-CC--------ceEeccCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEeCC------------CEEEEEecC
Confidence 11 11 1222234645 58899999999999999999999999888 889998864
No 13
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.83 E-value=1.3e-20 Score=195.59 Aligned_cols=213 Identities=14% Similarity=0.160 Sum_probs=166.3
Q ss_pred cCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcC
Q 003116 434 AHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIG 513 (846)
Q Consensus 434 ~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~ 513 (846)
.+|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 57899999999999999999999999999999999999999999999999998876666666789999999999999999
Q ss_pred CCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-Cc
Q 003116 514 KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GE 592 (846)
Q Consensus 514 ~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge 592 (846)
.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ......... |.
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~-~~L~~l~~~~~~ 170 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAER--RTVTLTQKHVRGRLA-ETLLILKENFGF 170 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHH-HHHHHHHHHHCB
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988876442 222233233333332 111111100 11
Q ss_pred EEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 593 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 593 ~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
..++ ..+...-++++ ++...+++|.+.++.+++|+..|++.... .++.+.|.++|+.
T Consensus 171 ---~~~~-------~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~~~L~~ 227 (232)
T 2gau_A 171 ---ENDG-------ATLSIYLSREE-LATLSNMTVSNAIRTLSTFVSERMLALDG------------KRIKIIDCDRLQK 227 (232)
T ss_dssp ---CTTS-------SBBSCCCCHHH-HHHHTTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESCHHHHHH
T ss_pred ---CCCC-------cEEEcccCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEeeCC------------CEEEEeCHHHHHH
Confidence 0010 11222334645 58889999999999999999999998887 8899999988863
No 14
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.83 E-value=1.9e-20 Score=192.33 Aligned_cols=208 Identities=11% Similarity=0.038 Sum_probs=113.6
Q ss_pred cCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcC
Q 003116 434 AHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIG 513 (846)
Q Consensus 434 ~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~ 513 (846)
.-|+|...++.+.+.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 34788899999999999999999999999999999999999999999999999887777777889999999999999988
Q ss_pred C-CceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccCCc
Q 003116 514 K-PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGE 592 (846)
Q Consensus 514 ~-pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ge 592 (846)
. ++.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... +....+...+...+++ ..+..+...
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rl~--~~L~~~~~~- 157 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVS--EKLFFLTTKTLREKLM--NFLVRHMNE- 157 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-------------------
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCHHHHHH--HHHHHHhcc-
Confidence 6 999999999999999999999999999999999999999888887533 1111222222222222 111112110
Q ss_pred EEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 593 IIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 593 ~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
. |.+...-++++ ++...+++|.+.++.++.|+..|++.... +++.+.|.++|+.
T Consensus 158 --------~-----g~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~G~I~~~~------------~~i~I~d~~~L~~ 211 (213)
T 1o5l_A 158 --------K-----RELTLPVTLEE-LSRLFGCARPALSRVFQELEREGYIEKHG------------RRIKVLKNPFEHD 211 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------C-----CcccCCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCeEEEcC------------CEEEEechHHhhh
Confidence 0 12222223545 58999999999999999999999998887 8899999998864
No 15
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.82 E-value=2.4e-19 Score=193.73 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=175.1
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++++++++|.+|++++++.+...++.+.|++|++|+++||.++++|+|++|.|++.. +|. .+..+.+|++|||
T Consensus 37 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g~--~~~~~~~G~~fGe 111 (299)
T 3shr_A 37 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV--KLCTMGPGKVFGE 111 (299)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---TTE--EEEEECTTCEESC
T ss_pred HHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CCE--EEEEeCCCCeeeH
Confidence 45689999999999999999999999999999999999999999999999999999954 232 3578999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
.+++.+.|+.++++|.++|+++.|++++|..++..+|......+..+...+ ..+..++..++..+. .......
T Consensus 112 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~------~~f~~l~~~~l~~l~-~~~~~~~ 184 (299)
T 3shr_A 112 LAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV------PTFQSLPEEILSKLA-DVLEETH 184 (299)
T ss_dssp SGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTS------HHHHHSCHHHHHHHT-TTCEEEE
T ss_pred hHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhC------HHhhhCCHHHHHHHH-HhccEEE
Confidence 999999999999999999999999999999999999987765555443333 366778888887766 4677778
Q ss_pred ccCCcEEEecCc---EEEEEEeceEeeecch-hhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEE
Q 003116 588 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQ-EELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVI 663 (846)
Q Consensus 588 y~~ge~I~~~~~---~~~iL~~G~v~~~~~~-eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~ 663 (846)
|.+|+.|..+++ .+|+|.+|.++..... ++ +....+..-.....|++.+. ...-++.+++.. .+++.+.
T Consensus 185 ~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~--g~~~~~~~l~~G~~fGe~~l----l~~~~~~~tv~a-~~~~~l~ 257 (299)
T 3shr_A 185 YENGEYIIRQGARGDTFFIISKGKVNVTREDSPN--EDPVFLRTLGKGDWFGEKAL----QGEDVRTANVIA-AEAVTCL 257 (299)
T ss_dssp ECTTCEEECTTCEECEEEEEEESEEEEEECCSSS--CCCEEEEEEETTCEECGGGG----SSSEECSSEEEE-SSSEEEE
T ss_pred ECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCC--CcceEEEEcCCCCEeChHHH----hCCCCcceEEEE-CCCEEEE
Confidence 999999988876 7899999999865322 00 00001111122335555431 123344455444 6889999
Q ss_pred EEeccccc
Q 003116 664 IFDIAAFE 671 (846)
Q Consensus 664 ~~d~~~~~ 671 (846)
.++.+.|.
T Consensus 258 ~i~~~~f~ 265 (299)
T 3shr_A 258 VIDRDSFK 265 (299)
T ss_dssp EEEHHHHH
T ss_pred EEeHHHHH
Confidence 99988876
No 16
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.82 E-value=4.5e-20 Score=209.45 Aligned_cols=231 Identities=12% Similarity=0.138 Sum_probs=179.6
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++++|++|+++++..|+..+..+.|++|++|+++|+.++++|+|.+|.|+++... +|+...+..+++|++|||
T Consensus 143 i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~-~G~~~~v~~l~~G~~fGe 221 (416)
T 3tnp_B 143 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC-DGVGRCVGNYDNRGSFGE 221 (416)
T ss_dssp HHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEC-SSCEEEEEEEESCCEECG
T ss_pred HHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEec-CCCEEEEEEecCCCEEee
Confidence 4678999999999999999999999999999999999999999999999999999999844 455555789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
.+++.+.|+.++++|.++|.+|.|+++.|..++..+|.+...++..+..++ ..+..++..++..+. .......
T Consensus 222 ~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v------~lf~~Ls~~el~~L~-~~l~~~~ 294 (416)
T 3tnp_B 222 LALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL------PFLKSLEVSERLKVV-DVIGTKV 294 (416)
T ss_dssp GGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGC------GGGTTCCHHHHHHHH-HHCEEEE
T ss_pred HHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhc------hHhhcCCHHHHHHHH-hhceEEE
Confidence 999999999999999999999999999999999999987765554443333 355678888887766 4677789
Q ss_pred ccCCcEEEecCc---EEEEEEeceEeeecchhhhc----cCCccCCccchhhhhhhccccCccccccccccceeeeecce
Q 003116 588 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELI----TPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRA 660 (846)
Q Consensus 588 y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli----~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~ 660 (846)
|.+|+.|..+++ .+|+|.+|.++.......-- .....+..-.....|++++. ...-++.+++..+ +++
T Consensus 295 ~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~al----l~~~~r~~tv~A~-~~~ 369 (416)
T 3tnp_B 295 YNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELAL----VTNKPRAASAHAI-GTV 369 (416)
T ss_dssp ECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGG----TCCSCCSSEEEEE-EEE
T ss_pred ECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHH----hCCCCceeEEEEc-CCe
Confidence 999999988865 89999999998653321000 00000111122345666552 2344566666655 689
Q ss_pred EEEEEeccccc
Q 003116 661 RVIIFDIAAFE 671 (846)
Q Consensus 661 ~i~~~d~~~~~ 671 (846)
.++.++.+.|.
T Consensus 370 ~ll~I~~~~f~ 380 (416)
T 3tnp_B 370 KCLAMDVQAFE 380 (416)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEEEHHHHH
Confidence 99999998875
No 17
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.82 E-value=2.7e-19 Score=182.08 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=157.5
Q ss_pred CCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCC----Cc
Q 003116 441 LPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK----PY 516 (846)
Q Consensus 441 Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~----pr 516 (846)
|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 68999999999999999999999999999999999999999999998877777778899999999999999998 89
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEE
Q 003116 517 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIE 595 (846)
Q Consensus 517 ~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~ 595 (846)
.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ......... |.. .
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~Rl~-~~L~~l~~~~~~~-~ 156 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTR--KVGDLAFLDVTGRVA-RTLLDLCQQPDAM-T 156 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCHHHHHH-HHHHHHTTSTTCE-E
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHhcCCC-C
Confidence 99999999999999999999999999999999999999888876432 222333333333332 111111111 210 0
Q ss_pred ecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEec
Q 003116 596 IPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDI 667 (846)
Q Consensus 596 ~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~ 667 (846)
. ++ .+...-++++ |+...+++|.+.++.+++|+..|++.... .++.++|.
T Consensus 157 ~-~~--------~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~ 206 (207)
T 2oz6_A 157 H-PD--------GMQIKITRQE-IGRIVGCSREMVGRVLKSLEEQGLVHVKG------------KTMVVFGT 206 (207)
T ss_dssp E-TT--------EEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEEETC
T ss_pred C-CC--------ceecccCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecC------------CEEEEEeC
Confidence 1 11 1222334645 58899999999999999999999998877 88888885
No 18
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.81 E-value=2e-19 Score=190.87 Aligned_cols=206 Identities=13% Similarity=0.063 Sum_probs=157.3
Q ss_pred CCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCC-C
Q 003116 437 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-P 515 (846)
Q Consensus 437 lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~-p 515 (846)
++..|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+. |
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~ 132 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQE 132 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCB
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCC
Confidence 346799999999999999999999999999999999999999999999998877777778899999999999999998 8
Q ss_pred ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEE
Q 003116 516 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEII 594 (846)
Q Consensus 516 r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I 594 (846)
+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ..+...... |. .
T Consensus 133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~--~~~~l~~~~~~~Rla-~~Ll~l~~~~~~-~ 208 (260)
T 3kcc_A 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSE--KVGNLAFLLVTGRIA-QTLLNLAKQPDA-M 208 (260)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH--HHHHHHHCCHHHHHH-HHHHHHHTSTTC-E
T ss_pred CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHhcCC-C
Confidence 999999999999999999999999999999999999999988876442 222233333333332 111111111 11 1
Q ss_pred EecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecc
Q 003116 595 EIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIA 668 (846)
Q Consensus 595 ~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~ 668 (846)
.. ++ .+...-++++ |+...+++|.+.++.|+.|+..|++.... .+|+|+|++
T Consensus 209 ~~-~~--------~~~l~lt~~~-lA~~lG~sr~tvsR~l~~L~~~GlI~~~~------------~~i~I~d~~ 260 (260)
T 3kcc_A 209 TH-PD--------GMQIKITRQE-IGQIVGCSRETVGRILKMLEDQNLISAHG------------KTIVVYGTR 260 (260)
T ss_dssp EE-TT--------EEEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECS------------SEEEEC---
T ss_pred CC-CC--------ceeecCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEEcC------------CEEEEEeCC
Confidence 11 11 1222234645 58889999999999999999999999888 889998864
No 19
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.81 E-value=1.9e-19 Score=184.84 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=156.3
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC-cchhh-HhhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCCCC
Q 003116 364 FPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLREL 441 (846)
Q Consensus 364 ~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~Gl-Ide~E-~~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~~L 441 (846)
.-.+..+|+.++++..+..+.++|+++.|+... +++.+ ...|++.+..++..... .. +.++|+|.++
T Consensus 18 ~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~----------~~-l~~~~~f~~l 86 (212)
T 3ukn_A 18 TKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLN----------KE-LLQLPLFESA 86 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCC----------CG-GGGSGGGTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHH----------HH-HHhcHHhhcC
Confidence 345678999999999999999999999997443 55443 45677777777664322 12 3479999999
Q ss_pred CHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCC--CceeE
Q 003116 442 PPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK--PYMSD 519 (846)
Q Consensus 442 s~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~--pr~~t 519 (846)
+++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++.. | .++..+++|++|||.+++.+. ++.++
T Consensus 87 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~---~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~ 161 (212)
T 3ukn_A 87 SRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD---N--TVLAILGKGDLIGSDSLTKEQVIKTNAN 161 (212)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS---S--CEEEEECTTCEEECSCCSSSSCCBBCSE
T ss_pred CHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC---C--eEEEEecCCCCcCcHHhccCCCCCcceE
Confidence 9999999999999999999999999999999999999999999862 3 335799999999999999998 99999
Q ss_pred EEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 520 MVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 520 v~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
++|.++|+++.|++++|.+++..+|.+...+++.++.+++.
T Consensus 162 v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 162 VKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred EEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998888777654
No 20
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.81 E-value=2.9e-19 Score=180.21 Aligned_cols=187 Identities=10% Similarity=-0.063 Sum_probs=127.2
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
..+++.++.|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 56888999999999999999999999999999999999999999999999999999998877777778899999999988
Q ss_pred -hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 509 -EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 509 -sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
+++.+.|+.++++|.++|+++.||+++|.+++.++|.+...+.+.+..++.... .....+...+.+.+++ ..+..
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~--~~~~~l~~~~~~~Rl~--~~L~~ 161 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQ--LRSKFQHMYSKEEQYH--NFSSR 161 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH--HHHHHHHHC--------------
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH--HHHHH
Confidence 788999999999999999999999999999999999999999888888776532 1222232233333222 11112
Q ss_pred ccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhcc
Q 003116 588 CLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 588 y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~ 638 (846)
++ .+...-++++ |+...+++|.+.++.++.+.
T Consensus 162 ~~------------------~~~~~~t~~~-iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 162 FP------------------EFIQRVPQYL-LASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ---------------------------------------------------
T ss_pred Ch------------------HHHHHCCHHH-HHHHhCCCHHHHHHHHHhhc
Confidence 21 1111223535 58889999999998887763
No 21
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=204.25 Aligned_cols=226 Identities=14% Similarity=0.160 Sum_probs=178.1
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++++|.+|+++++..+...+..+.|++|++|+++|++++++|+|.+|.|+++. +|+ .+..+++|++|||
T Consensus 128 i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~--~v~~l~~G~~fGe 202 (381)
T 4din_B 128 LAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE--WVTNISEGGSFGE 202 (381)
T ss_dssp HHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE--EEEEEESSCCBCG
T ss_pred HHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe--EeeeCCCCCEEEc
Confidence 45689999999999999999999999999999999999999999999999999999986 233 2468999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
.+++.+.|+.++++|.++|.+|.|+++.|.+++.++|.+...++..+..++. .+..++..++..+. .......
T Consensus 203 ~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~------~f~~Ls~~el~~l~-~~~~~~~ 275 (381)
T 4din_B 203 LALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLEKWERLTVA-DALEPVQ 275 (381)
T ss_dssp GGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCS------TTTTCCTTHHHHHH-TTCBCCC
T ss_pred hHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhH------HHHhccHHHHHHHH-Hhhhhcc
Confidence 9999999999999999999999999999999999999998887776655543 45567777777665 5677788
Q ss_pred ccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEE
Q 003116 588 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664 (846)
Q Consensus 588 y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~ 664 (846)
|.+|+.|..+++ .+|+|.+|.++......+- .....+..-.....|++++. ...-++.+++..+ +++.++.
T Consensus 276 ~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~-~~~~~v~~l~~Gd~fGe~al----l~~~~r~~tv~A~-~~~~ll~ 349 (381)
T 4din_B 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPN-EEYVEVGRLGPSDYFGEIAL----LLNRPRAATVVAR-GPLKCVK 349 (381)
T ss_dssp BCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSS-SCCCEEEEECTTCEECTTGG----GSCCBCSSEEEES-SCBEEEE
T ss_pred CCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCC-CceEEEEEeCCCCEechHHH----hCCCCceeEEEEc-CCEEEEE
Confidence 999999987765 8999999999875432110 00000111122335665542 2244566666654 7899999
Q ss_pred Eeccccc
Q 003116 665 FDIAAFE 671 (846)
Q Consensus 665 ~d~~~~~ 671 (846)
+|.+.|.
T Consensus 350 i~~~~f~ 356 (381)
T 4din_B 350 LDRPRFE 356 (381)
T ss_dssp EEHHHHH
T ss_pred EeHHHHH
Confidence 9998876
No 22
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.81 E-value=4.1e-20 Score=190.43 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=166.6
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
..+|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++ .+.+|+..++..+++|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 356888999999999999999999999999999999999999999999999999995 555666666789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccc
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 588 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y 588 (846)
|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... .....+...+...+++ ..+..+
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rl~--~~L~~l 150 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSL--TIINGLVFKDARLRLA--EFLVQA 150 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHHH--HHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCHHHHHH--HHHHHH
Confidence 889999999999999999999999999999999999999998887644 2223344444444443 111111
Q ss_pred cC--CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccc-cccccceeeeecceEEEEE
Q 003116 589 LR--GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVS-FSHQGSCYLVETRARVIIF 665 (846)
Q Consensus 589 ~~--ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~-~~~~~~~~~ve~~~~i~~~ 665 (846)
.. |.. . ++.. .+...-++++ ++...+++|.+.++.++.|+..|++... . .++.+.
T Consensus 151 ~~~~g~~--~-~~~~------~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~------------~~i~i~ 208 (220)
T 2fmy_A 151 AMDTGLK--V-PQGI------KLELGLNTEE-IALMLGTTRQTVSVLLNDFKKMGILERVNQ------------RTLLLK 208 (220)
T ss_dssp HHHHCEE--E-TTEE------EEECSSCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEESSS------------SEEEES
T ss_pred HHHhCCC--C-CCcE------EEeccCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEEcCC------------CEEEEc
Confidence 11 211 0 1111 1222334645 5888999999999999999999999886 7 789999
Q ss_pred ecccccc
Q 003116 666 DIAAFEA 672 (846)
Q Consensus 666 d~~~~~~ 672 (846)
|.++|+.
T Consensus 209 d~~~L~~ 215 (220)
T 2fmy_A 209 DLQKLKE 215 (220)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988863
No 23
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.81 E-value=4.3e-19 Score=190.61 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++|+|.+|++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++. +|+ .+..+++|++|||
T Consensus 37 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g~--~~~~l~~G~~fGe 111 (291)
T 2qcs_B 37 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGE 111 (291)
T ss_dssp HHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TTE--EEEEECTTCEECG
T ss_pred HHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CCe--EEEEcCCCCccch
Confidence 45788999999999999999999999999999999999999999999999999999987 232 3578999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccc
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 587 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~ 587 (846)
.+++.+.|+.++++|.++|.++.|+++.|.+++..+|.+...++..+..++. ++..++..++..+. .......
T Consensus 112 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~------lf~~l~~~~~~~l~-~~~~~~~ 184 (291)
T 2qcs_B 112 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLDKWERLTVA-DALEPVQ 184 (291)
T ss_dssp GGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGTTCCHHHHHHHH-HHCEEEE
T ss_pred HHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhch------HhhhCCHHHHHHHH-hhcEEEE
Confidence 9999999999999999999999999999999999999998887776655443 45677777777665 4677778
Q ss_pred ccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEE
Q 003116 588 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664 (846)
Q Consensus 588 y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~ 664 (846)
|.+|+.|..+++ .+|+|.+|.++.....++- .....+..-.....|++.+. ...-++.+++.. .+++.+..
T Consensus 185 ~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~-~~~~~~~~l~~G~~fGe~~l----l~~~~~~~tv~a-~~~~~~~~ 258 (291)
T 2qcs_B 185 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSEN-EEFVEVGRLGPSDYFGEIAL----LMNRPKAATVVA-RGPLKCVK 258 (291)
T ss_dssp ECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTT-SCEEEEEEECTTCEECSGGG----TCCCCCSSEEEE-EEEEEEEE
T ss_pred ECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCC-CccEEEEEeCCCCEecHHHH----cCCCCcceEEEE-CCcEEEEE
Confidence 999999987765 8899999999865321010 00000011122234554432 122334555554 46789999
Q ss_pred Eeccccc
Q 003116 665 FDIAAFE 671 (846)
Q Consensus 665 ~d~~~~~ 671 (846)
++.+.|.
T Consensus 259 i~~~~f~ 265 (291)
T 2qcs_B 259 LDRPRFE 265 (291)
T ss_dssp EEHHHHH
T ss_pred EcHHHHH
Confidence 9988775
No 24
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.79 E-value=3.3e-19 Score=169.78 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=118.7
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEE---eeEeCCCCee
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSL---HPVFTHGSNL 505 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~---~~~l~~G~~f 505 (846)
.++|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..+ +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4678999999999999999999999999999999999999999999999999999998776676666 7899999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 506 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 506 GE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
|+.+++.+.++.++++|.++|+++.||++.|.+++.++|.+...+++.++..+++
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887765
No 25
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.79 E-value=1e-19 Score=187.81 Aligned_cols=207 Identities=13% Similarity=0.087 Sum_probs=163.5
Q ss_pred HHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhh
Q 003116 431 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 510 (846)
Q Consensus 431 ~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sl 510 (846)
+|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++ .+.+|+..++..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 3678999999999999999999999999999999999999999999999999997 55566666778999999999
Q ss_pred hcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC
Q 003116 511 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR 590 (846)
Q Consensus 511 l~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~ 590 (846)
.|+.++++|.++|+++.||++.|.+++.++|.+...+++.++.++.... .....+...+...+++ ..+..+..
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~--~~L~~l~~ 148 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCM--RTIEDLMFHDIKQRIA--GFFIDHAN 148 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHHH--HHHHHTCB
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH--HHHHHHHH
Confidence 6899999999999999999999999999999999999999999887644 2222344444444443 12222211
Q ss_pred --CcEEEecCcEEEEEEec-eEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceE-EEEEe
Q 003116 591 --GEIIEIPYHCIGFLLEG-FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRAR-VIIFD 666 (846)
Q Consensus 591 --ge~I~~~~~~~~iL~~G-~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~-i~~~d 666 (846)
|.. .+ +| .+...-++++ |+...+++|.+.++.++.|+..|++.... .+ +++.|
T Consensus 149 ~~~~~----~~------~~~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~L~~~g~I~~~~------------~~i~~i~d 205 (222)
T 1ft9_A 149 TTGRQ----TQ------GGVIVSVDFTVEE-IANLIGSSRQTTSTALNSLIKEGYISRQG------------RGHYTIPN 205 (222)
T ss_dssp CCCSC----C--------CCCCEECCCHHH-HHHHHCSCHHHHHHHHHHHHHTTSSEECS------------TTCEECSS
T ss_pred HhCCC----CC------CcEEEeccCCHHH-HHHHhCCcHHHHHHHHHHHHHCCcEEEcC------------CceEEEcC
Confidence 210 00 01 2333344645 58899999999999999999999998888 77 45669
Q ss_pred cccccc
Q 003116 667 IAAFEA 672 (846)
Q Consensus 667 ~~~~~~ 672 (846)
.++|+.
T Consensus 206 ~~~L~~ 211 (222)
T 1ft9_A 206 LVRLKA 211 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 26
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.79 E-value=2.6e-19 Score=188.43 Aligned_cols=213 Identities=9% Similarity=0.018 Sum_probs=167.4
Q ss_pred HhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhh
Q 003116 432 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 511 (846)
Q Consensus 432 L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll 511 (846)
+.....|..|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 4445556999999999999999999999999999999999999999999999999887777777889999999999 78
Q ss_pred cCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccccc-C
Q 003116 512 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCL-R 590 (846)
Q Consensus 512 ~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~-~ 590 (846)
.+. +.++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ........ .
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~Rl~-~~L~~l~~~~ 164 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYAR--QVAEMNTYNPTIRIL-RLFYELCSSQ 164 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH--HHHHHTTSCHHHHHH-HHHHHHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHHh
Confidence 888 999999999999999999999999999999999999999998886442 222233233333332 11111110 0
Q ss_pred CcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccc
Q 003116 591 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAF 670 (846)
Q Consensus 591 ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~ 670 (846)
|. . .++.. .+...-++++ |+...+++|.+.++.++.|+..|++.... .++.++|.++|
T Consensus 165 ~~--~-~~~~~------~i~~~~t~~~-iA~~lG~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i~d~~~L 222 (250)
T 3e6c_C 165 GK--R-VGDTY------EITMPLSQKS-IGEITGVHHVTVSRVLASLKRENILDKKK------------NKIIVYNLGEL 222 (250)
T ss_dssp CE--E-ETTEE------EEECCCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECS------------SEEEESCHHHH
T ss_pred CC--C-CCCCc------EecCCCCHHH-HHHHhCCcHHHHHHHHHHHHHCCCeEeCC------------CEEEEecHHHH
Confidence 10 0 01111 1222334645 58889999999999999999999999888 89999999998
Q ss_pred cc
Q 003116 671 EA 672 (846)
Q Consensus 671 ~~ 672 (846)
+.
T Consensus 223 ~~ 224 (250)
T 3e6c_C 223 KH 224 (250)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 27
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.78 E-value=1.8e-18 Score=165.83 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=124.6
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
.++++++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 56789999999999999999999999999999999999999999999999999999998876777777899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
+++.+.|+.++++|.++|+++.||+++|.+++.++|.+...+++.+..++..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~ 135 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRK 135 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888877765
No 28
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.78 E-value=2.4e-18 Score=166.22 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=121.9
Q ss_pred cchHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 426 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 426 ~~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+...++++++++|..+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++|
T Consensus 8 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~ 87 (154)
T 2z69_A 8 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 87 (154)
T ss_dssp HHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEE
T ss_pred hhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCee
Confidence 34567899999999999999999999999999999999999999999999999999999987766666667899999999
Q ss_pred chhhhhcCCC-ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 506 GLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 506 GE~sll~~~p-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
|+.+++.+.+ +.++++|.++|+++.||+++|.+++.++|.+...+++.++.++..
T Consensus 88 G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 88 AEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp SGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred ccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999888877764
No 29
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.77 E-value=8.5e-18 Score=169.33 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=124.6
Q ss_pred chHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 427 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 427 ~~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
.+.++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||
T Consensus 36 ~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 115 (187)
T 3gyd_A 36 EILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIG 115 (187)
T ss_dssp HHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEES
T ss_pred HHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeee
Confidence 34678999999999999999999999999999999999999999999999999999999998778777788999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 507 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
+.+++.+.++.++++|.++|+++.||++.|.+++.++|.+...+++.++..+++
T Consensus 116 e~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 169 (187)
T 3gyd_A 116 EMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTA 169 (187)
T ss_dssp HHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888666555554
No 30
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.77 E-value=1.3e-18 Score=182.38 Aligned_cols=205 Identities=11% Similarity=0.147 Sum_probs=154.2
Q ss_pred HhhHHHHhhcCe---EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCC--ce
Q 003116 443 PSVREPLELSTK---EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YM 517 (846)
Q Consensus 443 ~e~l~~L~~~~~---~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~p--r~ 517 (846)
++.++.|..... .+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+.+++.+.| +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 788899999988 9999999999999999999999999999999988777777788999999999999999987 45
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEEe
Q 003116 518 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEI 596 (846)
Q Consensus 518 ~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~~ 596 (846)
++++|.++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ..+...... | ...
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~--~~~~l~~~~~~~Rla-~~L~~l~~~~g--~~~ 184 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEM--MIETLAHRDMGSRLV-SFLLILCRDFG--VPC 184 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HHHHHHCSSHHHHHH-HHHHHHHHHHE--EEC
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHHhC--CCC
Confidence 8999999999999999999999999999999999998888876432 222222222222222 111111100 1 000
Q ss_pred cCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 597 PYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 597 ~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
.++ . .+...-++++ |+...+++|.+.++.|+.|+..|++.... ++|.++|.++|+.
T Consensus 185 ~~~-~------~i~~~lt~~~-lA~~lG~sr~tvsR~l~~L~~~GlI~~~~------------~~i~I~d~~~L~~ 240 (243)
T 3la7_A 185 ADG-I------TIDLKLSHQA-IAEAIGSTRVTVTRLLGDLREKKMISIHK------------KKITVHKPVTLSR 240 (243)
T ss_dssp SSS-E------EECSCCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEET------------TEEEECC------
T ss_pred CCC-e------EEeccCCHHH-HHHHHCCcHHHHHHHHHHHHHCCCEEEcC------------CEEEECCHHHHHh
Confidence 011 0 1222234645 58899999999999999999999999888 9999999999874
No 31
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.75 E-value=6.9e-18 Score=176.27 Aligned_cols=208 Identities=10% Similarity=0.044 Sum_probs=158.2
Q ss_pred CCCCHhhHHHHhh--cCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCc
Q 003116 439 RELPPSVREPLEL--STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 516 (846)
Q Consensus 439 ~~Ls~e~l~~L~~--~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr 516 (846)
+++++++++.+.. .++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4688999999885 589999999999999999999999999999999998877777767788 9999999999998874
Q ss_pred --eeEEEEc-ceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhcccccccc-CCc
Q 003116 517 --MSDMVTD-SVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCL-RGE 592 (846)
Q Consensus 517 --~~tv~A~-~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~-~ge 592 (846)
.+++.|. ++|+++.||++.|.+++.++|.+...+++.++.++..... ....+...+...+++ ........ .|.
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~Rla-~~L~~l~~~~g~ 157 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLA--KFNDFSINGKLGSIC-SQLLILTYVYGK 157 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHH-HHHHHHHHHHEE
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHccCHHHHHH-HHHHHHHHHhCC
Confidence 6777777 5999999999999999999999999999999988876432 222333334443332 11111110 011
Q ss_pred EEEecCcEEEEEEeceEee-ecchhhhccCCccCCc-cchhhhhhhccccCccccccccccceeeeecceEEEEEecccc
Q 003116 593 IIEIPYHCIGFLLEGFIKT-HGLQEELITPPAALIP-SQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAF 670 (846)
Q Consensus 593 ~I~~~~~~~~iL~~G~v~~-~~~~eeli~~~~~l~~-~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~ 670 (846)
. . ++ +. .+.. .-++++ ++...+++| .+.++.|++|+..|++.... .+|.++|.++|
T Consensus 158 ~--~-~~--~~----~i~~~~~t~~~-lA~~lG~sr~etvsR~l~~l~~~glI~~~~------------~~i~I~d~~~L 215 (238)
T 2bgc_A 158 E--T-PD--GI----KITLDNLTMQE-LGYSSGIAHSSAVSRIISKLKQEKVIVYKN------------SCFYVQNLDYL 215 (238)
T ss_dssp E--E-TT--EE----EECCSCCCHHH-HHHHTTCCCHHHHHHHHHHHHHTTSEEEET------------TEEEESCHHHH
T ss_pred C--C-CC--ce----EEEeccCCHHH-HHHHhCCChHHHHHHHHHHHHHCCCEEecC------------CEEEEeCHHHH
Confidence 0 0 11 00 1222 234645 588899999 79999999999999998887 88999999988
Q ss_pred cc
Q 003116 671 EA 672 (846)
Q Consensus 671 ~~ 672 (846)
+.
T Consensus 216 ~~ 217 (238)
T 2bgc_A 216 KR 217 (238)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 32
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=3.4e-18 Score=167.30 Aligned_cols=125 Identities=10% Similarity=0.159 Sum_probs=114.7
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++. +.+|+...+..+++|++||+
T Consensus 36 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe 114 (161)
T 3idb_B 36 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGE 114 (161)
T ss_dssp HHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECG
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEech
Confidence 45789999999999999999999999999999999999999999999999999999999 55566666789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHH
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 553 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~ 553 (846)
.+++.+.++.++++|.++|.++.|++++|.+++.++|.+.+.++..
T Consensus 115 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 115 LALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp GGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred HHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999987666543
No 33
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.74 E-value=3.9e-17 Score=187.70 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=110.2
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCe--EEEeeEeCCCCee
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNK--HSLHPVFTHGSNL 505 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~--~~~~~~l~~G~~f 505 (846)
+.++|+++++|.+|++++++.+...+..+.|++|++|+++||+++++|+|.+|.|+++..+.+|+ ..++..+++|++|
T Consensus 40 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~f 119 (469)
T 1o7f_A 40 IFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAF 119 (469)
T ss_dssp HHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCc
Confidence 45788999999999999999999999999999999999999999999999999999998876553 3556899999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHH
Q 003116 506 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVE 547 (846)
Q Consensus 506 GE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~ 547 (846)
|+.+ +.+.|+.++++|.++|+++.||+++|.+++.++|.+.
T Consensus 120 Ge~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 120 GESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred chhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 9999 9999999999999999999999999999999888754
No 34
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.72 E-value=2.6e-17 Score=156.12 Aligned_cols=125 Identities=16% Similarity=0.277 Sum_probs=115.5
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
.++++++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+ ...+++|++||+.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeeeh
Confidence 467899999999999999999999999999999999999999999999999999997643 1478999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
+++.+.++.++++|.++|+++.||+++|.+++.++|.+...+++.++.++.+
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999888887777653
No 35
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.71 E-value=8.4e-17 Score=156.45 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=112.1
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
.++|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++.. + .....+++|++||+.
T Consensus 26 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---~--~~~~~~~~G~~fG~~ 100 (160)
T 4f8a_A 26 RKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD---D--EVVAILGKGDVFGDV 100 (160)
T ss_dssp HHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET---T--EEEEEEETTCEEECC
T ss_pred HHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC---C--EEEEEecCCCEeCcH
Confidence 56899999999999999999999999999999999999999999999999999999872 2 345799999999999
Q ss_pred hhhcC--CCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHH
Q 003116 509 EVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 554 (846)
Q Consensus 509 sll~~--~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l 554 (846)
+++.+ .++.++++|.++|+++.||+++|.++++++|.+...+++.+
T Consensus 101 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 101 FWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp TTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 79999999999999999999999999999999988777654
No 36
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.71 E-value=7.2e-17 Score=153.71 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=103.4
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++++|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|++.. +|+ .+..+++|++||+
T Consensus 21 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~--~~~~~~~G~~fGe 95 (139)
T 3ocp_A 21 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV--KLCTMGPGKVFGE 95 (139)
T ss_dssp HHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE--EEEEECTTCEESC
T ss_pred HHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE--EEEEeCCCCEecc
Confidence 45789999999999999999999999999999999999999999999999999999954 233 3578999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHH
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 550 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l 550 (846)
.+++.+.++.++++|.++|+++.|++++|.+++.++|.+++..
T Consensus 96 ~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 96 LAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred HHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 9999999999999999999999999999999999999987654
No 37
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.70 E-value=3.4e-17 Score=165.51 Aligned_cols=184 Identities=19% Similarity=0.151 Sum_probs=142.3
Q ss_pred EEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHHH
Q 003116 456 IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 535 (846)
Q Consensus 456 ~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~~ 535 (846)
+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++..+++|++||+ +++.+.|+.++++|.++|+++.||++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5799999999999999999999999999999887777777789999999999 999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEEecCcEEEEEEeceEeeecc
Q 003116 536 ILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEIPYHCIGFLLEGFIKTHGL 614 (846)
Q Consensus 536 f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~~~~~~~~iL~~G~v~~~~~ 614 (846)
|. |.+...+++.++.++..... ....+...+...+++ ......... |..- .+ |.+...-+
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~-~~L~~l~~~~~~~~--~~--------~~~~~~~t 141 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQA--YEAHLQTGELRARIA-RYLLFLADTPLSAR--DR--------QGIYVTVS 141 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHH--HHHHHTSSCHHHHHH-HHHHHHTTSTTEEE--ET--------TEEEEECC
T ss_pred cC------HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHHcCCCC--CC--------CeeeccCC
Confidence 98 99999999999888876442 222233333333332 111111111 2110 11 11222334
Q ss_pred hhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 615 QEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 615 ~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
+++ ++...+++|.+.++.++.|+..|++.... +++.+.|.++|+.
T Consensus 142 ~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i~d~~~L~~ 186 (195)
T 3b02_A 142 HEE-IADATASIRESVSKVLADLRREGLIATAY------------RRVYLLDLAALER 186 (195)
T ss_dssp HHH-HHHTTTSCHHHHHHHHHHHHHHTSEEEET------------TEEEECCHHHHHH
T ss_pred HHH-HHHHhCCCHHHHHHHHHHHHHCCCEEecC------------CEEEEeCHHHHHH
Confidence 645 58899999999999999999999998887 8899999998874
No 38
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.69 E-value=1.3e-16 Score=155.04 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=107.9
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
+.++|+++|+|.+|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++. +++ .+..+++|++||+
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fGe 110 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEECC
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEeee
Confidence 45689999999999999999999999999999999999999999999999999999987 233 3478999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHH
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 551 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~ 551 (846)
.+++.+.++.++++|.++|.++.|++++|.+++.++|.+.+.+|
T Consensus 111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~~ 154 (154)
T 3pna_A 111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154 (154)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC----
T ss_pred hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhcC
Confidence 99999999999999999999999999999999999998876654
No 39
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.68 E-value=3.7e-16 Score=171.39 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=121.7
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
..++|+++|+|.+|++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|+. ++..+++|++|||
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE 89 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence 357899999999999999999999999999999999999999999999999999999998877766 5689999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
.+++.+.|+.++++|.++|+++.|++++|.+++ ++|.+...+++.+..++..
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~~ 141 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLAA 141 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 9999998888777666553
No 40
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.66 E-value=9.6e-16 Score=192.32 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=106.6
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEec--CCeEEEeeEeCCCCee
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI--RNKHSLHPVFTHGSNL 505 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~--g~~~~~~~~l~~G~~f 505 (846)
+...|+++++|+.|++.++..|+.++....|++|++||++||.++.||+|.+|.|.|+.... ++....+..+++|+.|
T Consensus 40 I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sF 119 (999)
T 4f7z_A 40 IFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAF 119 (999)
T ss_dssp HHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcch
Confidence 34578899999999999999999999999999999999999999999999999999998643 2334456789999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHH
Q 003116 506 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 546 (846)
Q Consensus 506 GE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~ 546 (846)
|| +++.+.||++||+|.++|++|.|++++|+.++.++|+.
T Consensus 120 GE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 120 GE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp CG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred hh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 99 89999999999999999999999999999999876653
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.66 E-value=2.5e-16 Score=169.99 Aligned_cols=134 Identities=15% Similarity=0.249 Sum_probs=124.6
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEe-cCCeEEEeeEeCCCCeech
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKS-IRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~-~g~~~~~~~~l~~G~~fGE 507 (846)
..++++.++|..++++++..+...+..+.|++|++|+++|++++++|+|.+|.|+++..+ .+|+...+..+++|++|||
T Consensus 156 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe 235 (299)
T 3shr_A 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGE 235 (299)
T ss_dssp HHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECG
T ss_pred HHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeCh
Confidence 456788899999999999999999999999999999999999999999999999999887 4566666789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhh
Q 003116 508 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRIL 562 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~ 562 (846)
.+++.+.|+.++|+|.++|.++.|++++|.+++..+|.+...+++.++.++....
T Consensus 236 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~ 290 (299)
T 3shr_A 236 KALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEA 290 (299)
T ss_dssp GGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcch
Confidence 9999999999999999999999999999999999999999999999999888644
No 42
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.65 E-value=1.9e-16 Score=160.84 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=143.0
Q ss_pred hhcCeEEEEcCCCEEecCCCCC--CeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEE
Q 003116 450 ELSTKEIMKLSGVTLYREGSKP--SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 527 (846)
Q Consensus 450 ~~~~~~~~~~kGe~I~~eGd~~--~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ 527 (846)
...++.+.|++|++|+++|+++ +++|+|.+|.|+++..+.+|+..++..+++|++||+ +++.+.|+.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567789999999999999999 999999999999999887777777889999999999 9999999999999999999
Q ss_pred EEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccccccccC-CcEEEecCcEEEEEEe
Q 003116 528 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEIPYHCIGFLLE 606 (846)
Q Consensus 528 ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~~~~y~~-ge~I~~~~~~~~iL~~ 606 (846)
++.| ++.|. |.+...+++.++.++..... ....+...+...+++ ......... |. ...+
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~Rl~-~~L~~l~~~~~~--~~~~-------- 140 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQGLAEAYR--RIERLATQRLKNRMA-AALLELSETPLA--HEEE-------- 140 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHHHHHHHHH--HHHHHHHCCHHHHHH-HHHHHHTTSTTE--EEET--------
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHH-HHHHHHHHhcCC--CCCC--------
Confidence 9999 88876 99999899888888776432 222233333333332 111112221 21 1111
Q ss_pred ceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEecccccc
Q 003116 607 GFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 607 G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
+.+...-++++ ++...+++|.+.++.+++|+..|++.... +++.+.|.++|+.
T Consensus 141 ~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 141 GKVVLKATHDE-LAAAVGSVRETVTKVIGELAREGYIRSGY------------GKIQLLDLKGLKE 193 (202)
T ss_dssp TEEEEECCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEEET------------TEEEESCHHHHHH
T ss_pred cEEccCCCHHH-HHHHhCCCHHHHHHHHHHHHHCCCEEeCC------------CEEEEeCHHHHHH
Confidence 12333334645 58889999999999999999999998877 8999999998874
No 43
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.64 E-value=4.4e-17 Score=154.49 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=105.3
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEee--EeCCCCeec
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP--VFTHGSNLG 506 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~--~l~~G~~fG 506 (846)
.++|+++|+|..|++++++.+...++.+.|++|++|+++||+++++|+|.+|.|++. .+.+|+..++. .+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence 457899999999999999999999999999999999999999999999999999965 44445443345 899999999
Q ss_pred hhhh---hcCCC------ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHH
Q 003116 507 LYEV---LIGKP------YMSDMVTDSVVLCFFIESDKILSILRSDPAVED 548 (846)
Q Consensus 507 E~sl---l~~~p------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~ 548 (846)
+.++ +.+.+ +.++++|.++|+++.|++++|.+++.++|.+..
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9995 88875 579999999999999999999999999987643
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.4e-14 Score=155.25 Aligned_cols=125 Identities=13% Similarity=0.173 Sum_probs=113.4
Q ss_pred HHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEec-CCeEEEeeEeCCCCeechh
Q 003116 430 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI-RNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 430 ~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~-g~~~~~~~~l~~G~~fGE~ 508 (846)
.++.++++|..++++++..+...++.+.|++|++|+++|++++++|+|.+|.|++..... +++...+..+++|++|||.
T Consensus 157 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~ 236 (291)
T 2qcs_B 157 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI 236 (291)
T ss_dssp HHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSG
T ss_pred HHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHH
Confidence 467788999999999999999999999999999999999999999999999999998764 4445557899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHH
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 554 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l 554 (846)
+++.+.|+.++++|.++|+++.|++++|.+++..+|.+...+.+..
T Consensus 237 ~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 237 ALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp GGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred HHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999776655544
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.2e-15 Score=153.53 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=107.4
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechh
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~ 508 (846)
..++++.++|..++++++..+...+..+.|++|++|+++|++++++|+|.+|.|+++..+.+ .+..+++|++|||.
T Consensus 124 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 124 DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHDYFGEV 199 (246)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTCEECHH
T ss_pred HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCCcccHH
Confidence 56788999999999999999999999999999999999999999999999999999876532 35789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHH
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVE 547 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~ 547 (846)
+++.+.|+.++++|.++|+++.|++++|.+++..+|.+.
T Consensus 200 ~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 200 ALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999988764
No 46
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=141.46 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=103.1
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeEEEEc-CCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKEIMKL-SGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~-kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
+.++|+++++|..|++++++.+...++.+.|+ +|++|+++|++++++|+|.+|.|+++. .+|+. ..+++|++||
T Consensus 14 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~fG 88 (134)
T 2d93_A 14 LLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSFG 88 (134)
T ss_dssp HHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEES
T ss_pred HHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCccC
Confidence 44689999999999999999999999999999 999999999999999999999999985 33433 4588999999
Q ss_pred hhhhhcCCCceeEE-EEcceEEEEEEcHHHHHHHHhhChH
Q 003116 507 LYEVLIGKPYMSDM-VTDSVVLCFFIESDKILSILRSDPA 545 (846)
Q Consensus 507 E~sll~~~pr~~tv-~A~~~~~ll~I~~~~f~~ll~~~p~ 545 (846)
+.+++.+.++.+++ +|.++|+++.|+++.|.+++.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 89 ITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp CCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred hhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999999999987653
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=2.5e-15 Score=170.48 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=110.9
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecC------CeEEEeeEeCCC
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR------NKHSLHPVFTHG 502 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g------~~~~~~~~l~~G 502 (846)
..++.++++|..++++++..+...+..+.|++|++|+++|+.++++|||.+|.|+++..+.+ |+...+..+++|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 45788899999999999999999999999999999999999999999999999999877653 555567899999
Q ss_pred CeechhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHh
Q 003116 503 SNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 561 (846)
Q Consensus 503 ~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l 561 (846)
++|||.+++.+.|+.++|+|.++|.|+.|+++.|.+++..+|.+..+.+..+..++..+
T Consensus 346 ~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~ 404 (416)
T 3tnp_B 346 QYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVAL 404 (416)
T ss_dssp CEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----------
T ss_pred CEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887777777653
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=162.55 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=115.8
Q ss_pred HHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEec-CCeEEEeeEeCCCCeechh
Q 003116 430 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI-RNKHSLHPVFTHGSNLGLY 508 (846)
Q Consensus 430 ~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~-g~~~~~~~~l~~G~~fGE~ 508 (846)
.++.++++|..+++.++..+...+..+.|++|++|+++|+.++++|+|.+|.|+++.... +++...+..+++|++|||.
T Consensus 248 ~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~ 327 (381)
T 4din_B 248 EFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEI 327 (381)
T ss_dssp HHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTT
T ss_pred HHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechH
Confidence 578889999999999999999999999999999999999999999999999999998754 4444556899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHH
Q 003116 509 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL 558 (846)
Q Consensus 509 sll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL 558 (846)
+++.+.|+.++|+|.++|.|+.|+++.|.+++..+|.+.....+.....+
T Consensus 328 all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 328 ALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp GGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred HHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988766665544433
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=2.7e-13 Score=155.58 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=106.0
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCeE-EEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTKE-IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~~-~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
+.++++++++|.+|+++++..+...+.. +.|++|++|+++||+++++|||.+|.|+++..+ . . ++..+++|++||
T Consensus 335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~--~-~-~~~~l~~G~~fG 410 (469)
T 1o7f_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--K-G-VVCTLHEGDDFG 410 (469)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETT--T-E-EEEEEETTCEEC
T ss_pred HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC--C-e-eEEEecCCCEEE
Confidence 4578899999999999999999999985 589999999999999999999999999998743 2 2 357999999999
Q ss_pred hhhhhcCCCceeEEEEcc-eEEEEEEcHHHHHHHHhhChHHHHHHHH
Q 003116 507 LYEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAVEDFLWQ 552 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~-~~~ll~I~~~~f~~ll~~~p~~~~~l~~ 552 (846)
|.+++.+.|+.++|+|.+ +|+++.|++++|.+++.++|.+...+..
T Consensus 411 e~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 411 KLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp GGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred EehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 999999999999999998 7999999999999999999998766544
No 50
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.39 E-value=2.4e-14 Score=158.80 Aligned_cols=124 Identities=16% Similarity=0.288 Sum_probs=0.4
Q ss_pred HHHhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhh
Q 003116 430 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYE 509 (846)
Q Consensus 430 ~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~s 509 (846)
+.++++|+|+++++++++.+...++.+.++||++|+++||+++++|+|.+|.|++...+ ...+++|++|||.+
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~ 300 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMA 300 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehH
Confidence 45788999999999999999999999999999999999999999999999999998764 14789999999999
Q ss_pred hhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHH
Q 003116 510 VLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 560 (846)
Q Consensus 510 ll~~~pr~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~ 560 (846)
++.+.|+.++++|.++|+++.||+++|.++++++|++...+.+.+..++.+
T Consensus 301 ~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 301 LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ---------------------------------------------------
T ss_pred HhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888887777654
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.32 E-value=3.5e-12 Score=152.98 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=106.4
Q ss_pred hHHHHhcCCCCCCCCHhhHHHHhhcCe-EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeec
Q 003116 428 ISDLISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 506 (846)
Q Consensus 428 ~~~~L~~~~lF~~Ls~e~l~~L~~~~~-~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fG 506 (846)
+.++++++++|.+|++++++.+...+. .+.|++|++|+++||+++++|+|++|.|+++..+ + .++..+++|++||
T Consensus 30 l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g--~--~il~~l~~Gd~fG 105 (694)
T 3cf6_E 30 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--K--GVVCTLHEGDDFG 105 (694)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT--T--EEEEEEETTCEEC
T ss_pred HHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC--C--EEEEEeCCCCEee
Confidence 456899999999999999999999998 7899999999999999999999999999998753 2 3468999999999
Q ss_pred hhhhhcCCCceeEEEEcc-eEEEEEEcHHHHHHHHhhChHH
Q 003116 507 LYEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAV 546 (846)
Q Consensus 507 E~sll~~~pr~~tv~A~~-~~~ll~I~~~~f~~ll~~~p~~ 546 (846)
|.+++.+.++.++++|.+ +|+++.|++++|.+++.++|.+
T Consensus 106 e~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 106 KLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp HHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred hHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 999999999999999999 5999999999999999999876
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=2.6e-11 Score=152.13 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=97.9
Q ss_pred HHHHhcCCCCCCCCHhhHHHHhhcCeEEEE-cCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeech
Q 003116 429 SDLISAHPLLRELPPSVREPLELSTKEIMK-LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 507 (846)
Q Consensus 429 ~~~L~~~~lF~~Ls~e~l~~L~~~~~~~~~-~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE 507 (846)
.+++.++|.|..|+...+..|+..+....+ ++|++|++|||.++.||||++|.|.|+... . .. +..+++|++|||
T Consensus 336 ~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~--~-~~-v~~L~~Gd~FGE 411 (999)
T 4f7z_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--K-GV-VCTLHEGDDFGK 411 (999)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT--T-EE-EEEEETTCEECG
T ss_pred HHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC--C-cc-eEEecCCCcccc
Confidence 457888999999999999999999986554 689999999999999999999999998632 2 22 478999999999
Q ss_pred hhhhcCCCceeEEEEcce-EEEEEEcHHHHHHHHhh
Q 003116 508 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRS 542 (846)
Q Consensus 508 ~sll~~~pr~~tv~A~~~-~~ll~I~~~~f~~ll~~ 542 (846)
.+++++.||.+||+|.++ |++++|++++|.+++..
T Consensus 412 lALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp GGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred hhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 999999999999999985 99999999999999865
No 53
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=97.78 E-value=2.5e-06 Score=56.98 Aligned_cols=25 Identities=40% Similarity=0.792 Sum_probs=22.6
Q ss_pred ceeeeeeeccchhHHHHHHhhhhcc
Q 003116 81 KEAIILVWSGLRGAVALSLSLSVKR 105 (846)
Q Consensus 81 r~~~vl~wgGLRGAVsLALALsvp~ 105 (846)
+++++|+|||+||||+++|++.+|.
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~~ 26 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLDK 26 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhccC
Confidence 4678999999999999999998874
No 54
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=86.54 E-value=1.5 Score=39.71 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=59.9
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecch--hhhccCCccCCccchhhhhhhcc--
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQ--EELITPPAALIPSQGNLSFRSAE-- 638 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~--eeli~~~~~l~~~~~n~~l~~l~-- 638 (846)
+|..++..++..+. .......|++|+.|..+++ .+|+|++|.++..... .+.+...+.+.+ ...|++..
T Consensus 13 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~---G~~fGe~~l~ 88 (137)
T 1wgp_A 13 LFENMDERLLDAIC-ERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKE---GDFCGDELLT 88 (137)
T ss_dssp GGGSCCHHHHHHHH-HHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCT---TCBSSTHHHH
T ss_pred chhhCCHHHHHHHH-HHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecC---CCEecHHHHH
Confidence 56678888888877 4677889999999988765 8899999998854221 111111001122 22333332
Q ss_pred --ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 --TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 --~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
..+-.+-.|+.......+.+++.+..++.+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~ 123 (137)
T 1wgp_A 89 WALDPKSGSNLPSSTRTVKALTEVEAFALIADELK 123 (137)
T ss_dssp HHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHH
T ss_pred HHhccccccccccceeEEEEeEEEEEEEECHHHHH
Confidence 111111111122345556688999999988875
No 55
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=85.80 E-value=1.9 Score=39.15 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhcc-CCccCCccchhhhhhhc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELIT-PPAALIPSQGNLSFRSA 637 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~-~~~~l~~~~~n~~l~~l 637 (846)
.+|..++..+++.+. .......|++|+.|..+++ .+|+|++|.++.....+ +.+. ....+.+ ...|++.
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~---G~~fG~~ 87 (142)
T 3mdp_A 12 RFFASLTDEQLKDIA-LISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVP---GAIFGVS 87 (142)
T ss_dssp HHHHTSCHHHHHHHH-HTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECT---TCEECGG
T ss_pred chhccCCHHHHHHHH-HhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecC---CCEechH
Confidence 577789989988877 4678889999999988876 88999999988653221 1110 0111112 2233433
Q ss_pred cccCccccccccccceeeeecceEEEEEeccccc
Q 003116 638 ETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 638 ~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.. + ...++.+ ...+.+++.+..++.+.|.
T Consensus 88 ~~---~-~~~~~~~-~~~a~~~~~~~~i~~~~~~ 116 (142)
T 3mdp_A 88 SL---I-KPYHYTS-SARATKPVRVVDINGARLR 116 (142)
T ss_dssp GS---S-TTCBCSS-EEEESSCEEEEEEEHHHHH
T ss_pred HH---c-CCCCceE-EEEECCcEEEEEEeHHHHH
Confidence 21 1 2233333 4555578999999988775
No 56
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=83.74 E-value=1.3 Score=44.37 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhc
Q 003116 564 PQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSA 637 (846)
Q Consensus 564 ~~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l 637 (846)
..+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.| ...|++.
T Consensus 15 ~~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~--~~~~~---G~~~G~~ 88 (232)
T 2gau_A 15 RDVWSLLNEEERELLD-KEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS--RIVKP---GQFFGMR 88 (232)
T ss_dssp HHHHTTCCHHHHHHHH-HHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEE--EEECT---TCEESHH
T ss_pred cHhhhcCCHHHHHHHH-hhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEE--EEeCC---CCEeeee
Confidence 3678889999998877 4778889999999988765 78999999998653221 1100 11111 1123332
Q ss_pred cccCccccccccccceeeeecceEEEEEeccccc
Q 003116 638 ETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 638 ~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.. + ..-++.+ ...+.+++.+..++.+.|.
T Consensus 89 ~~---~-~~~~~~~-~~~A~~~~~v~~i~~~~~~ 117 (232)
T 2gau_A 89 PY---F-AEETCSS-TAIAVENSKVLAIPVEAIE 117 (232)
T ss_dssp HH---H-HTSCCSS-EEEESSCEEEEEEEHHHHH
T ss_pred hh---h-CCCCcce-EEEEecceEEEEEEHHHHH
Confidence 21 1 1122333 3444578999999988776
No 57
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=82.78 E-value=2 Score=39.53 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecch---hhhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQ---EELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~---eeli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++..++..+. .......|++|+.|..+++ .+++|++|.++..... ++. ....+.+ ...|++..
T Consensus 18 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~---G~~~G~~~ 91 (154)
T 2z69_A 18 HLFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNE---RNTFAEAM 91 (154)
T ss_dssp TTTTTSCHHHHHHHH-HTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------CCEEECT---TEEESGGG
T ss_pred hhhcCCCHHHHHHHH-hhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEccC---CCeeccHh
Confidence 356678888888877 4678889999999988765 7899999998865321 111 0111112 22333332
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. -...+.......+.+++.+..++.+.|.
T Consensus 92 ~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 120 (154)
T 2z69_A 92 M----FMDTPNYVATAQAVVPSQLFRFSNKAYL 120 (154)
T ss_dssp G----GSSCSBCSSEEEESSSEEEEEEEHHHHH
T ss_pred h----ccCCCCCceEEEEccceEEEEECHHHHH
Confidence 1 1122212334455678999999988775
No 58
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=82.24 E-value=1.1 Score=42.04 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=60.9
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecch--hhhccCCccCCccchhhhhhhccc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQ--EELITPPAALIPSQGNLSFRSAET 639 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~--eeli~~~~~l~~~~~n~~l~~l~~ 639 (846)
.+|..++..++..+. .......|.+|+.|..+++ .+|+|++|.++..... ++.+ ...+.+ ...|++...
T Consensus 44 ~~f~~l~~~~l~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~~---G~~fGe~~~ 117 (161)
T 3idb_B 44 LLFKNLDPEQMSQVL-DAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYDN---RGSFGELAL 117 (161)
T ss_dssp HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEES---CCEECGGGG
T ss_pred HhhhcCCHHHHHHHH-HhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcCC---CCEechHHH
Confidence 577789999988877 4677789999999988876 8899999998864321 0110 011111 123444331
Q ss_pred cCccccccccccceeeeecceEEEEEeccccc
Q 003116 640 SGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 640 ~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+ ..-++.++ ..+.+++.+..++.+.|.
T Consensus 118 ---~-~~~~~~~~-v~A~~~~~~~~i~~~~~~ 144 (161)
T 3idb_B 118 ---M-YNTPRAAT-ITATSPGALWGLDRVTFR 144 (161)
T ss_dssp ---T-CCCCCSSE-EEESSSEEEEEEEHHHHH
T ss_pred ---H-cCCCcccE-EEECCCeEEEEEeHHHHH
Confidence 1 13334444 444577999999988775
No 59
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=81.67 E-value=5.5 Score=38.85 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=59.5
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++...+..+. .......|.+|+.|..+++ .+|+|.+|.|.......+ ...+.+ ...|++...
T Consensus 78 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~----~~~l~~---G~~fGe~~~-- 147 (202)
T 3bpz_A 78 PLFANADPNFVTAML-TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK----EMKLSD---GSYFGEICL-- 147 (202)
T ss_dssp HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSC----CEEEET---TCEECHHHH--
T ss_pred CchhcCCHHHHHHHH-HhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCe----EEEEcC---CCEeccHHH--
Confidence 577788888888877 3677779999999988765 889999999986532111 111111 223333221
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-..-++.+ +..+.+.+.+..++.+.|.
T Consensus 148 --~~~~~~~~-~v~a~~~~~l~~i~~~~f~ 174 (202)
T 3bpz_A 148 --LTRGRRTA-SVRADTYCRLYSLSVDNFN 174 (202)
T ss_dssp --HHCSBCSS-EEEESSCEEEEEEEHHHHH
T ss_pred --hcCCCccc-EEEEeeEEEEEEEEHHHHH
Confidence 11223333 4445578899999988775
No 60
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=81.13 E-value=3 Score=37.64 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++..+++.+. .......|++|+.|..+++ .+++|++|.++..... + ..+.+.. .|++..
T Consensus 17 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~-----~~~~~G~---~~G~~~--- 83 (138)
T 1vp6_A 17 PLFQKLGPAVLVEIV-RALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-P-----VELGPGA---FFGEMA--- 83 (138)
T ss_dssp GGGGGCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-C-----EEECTTC---EECHHH---
T ss_pred hhhhcCCHHHHHHHH-HhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-c-----ceECCCC---EeeehH---
Confidence 467788888888877 4677789999999988775 7899999999875432 1 1112221 233322
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++ ..-++. ....+.+++.+..++.+.|.
T Consensus 84 ~~-~~~~~~-~~~~a~~~~~~~~i~~~~~~ 111 (138)
T 1vp6_A 84 LI-SGEPRS-ATVSAATTVSLLSLHSADFQ 111 (138)
T ss_dssp HH-HCCCCS-SCEEESSSEEEEEEEHHHHH
T ss_pred hc-cCCCce-eEEEECCCEEEEEECHHHHH
Confidence 11 111233 34455578999999988775
No 61
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=79.67 E-value=3.2 Score=37.68 Aligned_cols=94 Identities=7% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++..++..+. .......|.+|+.|..+++ .+|+|++|.++..... .. ...+.+ ...|++...
T Consensus 29 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g-~~---~~~~~~---G~~fGe~~~-- 98 (139)
T 3ocp_A 29 DFMKNLELSQIQEIV-DCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG-VK---LCTMGP---GKVFGELAI-- 98 (139)
T ss_dssp TTTTTSCHHHHHHHH-HHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETT-EE---EEEECT---TCEESCHHH--
T ss_pred HhhhcCCHHHHHHHH-HhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECC-EE---EEEeCC---CCEeccHHH--
Confidence 356678888888877 4677789999999988876 8899999999874321 11 111112 123333321
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
...-++.+ ...+.+.+.+..++.+.|.
T Consensus 99 --l~~~~~~~-~~~a~~~~~v~~i~~~~~~ 125 (139)
T 3ocp_A 99 --LYNCTRTA-TVKTLVNVKLWAIDRQCFQ 125 (139)
T ss_dssp --HHCCCCSS-EEEESSCEEEEEEEHHHHH
T ss_pred --HCCCCcce-EEEECcceEEEEEcHHHHH
Confidence 11223334 4445578999999988775
No 62
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=79.32 E-value=3.7 Score=37.33 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=58.7
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++..+++.+. .......|++|+.|..+++ .+++|++|.++.....+ +.+ ...+.+ ...|++..
T Consensus 11 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~---g~~~G~~~ 84 (149)
T 2pqq_A 11 PLFAALDDEQSAELR-ASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGP---SELIGELS 84 (149)
T ss_dssp TTTTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECT---TCEESGGG
T ss_pred hhhhcCCHHHHHHHH-HhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCC---cCEechHH
Confidence 356678888888776 4677889999999988876 78999999988653211 110 011111 12333322
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. + ..-++.+ ...+.+++.+..++.+.|+
T Consensus 85 ~---~-~~~~~~~-~~~a~~~~~~~~i~~~~~~ 112 (149)
T 2pqq_A 85 L---F-DPGPRTA-TGTALTEVKLLALGHGDLQ 112 (149)
T ss_dssp G---T-SCEECSS-EEEESSCEEEEEEEGGGHH
T ss_pred h---c-CCCCcce-EEEEccceEEEEEeHHHHH
Confidence 1 1 1122333 4445578999999988775
No 63
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=79.20 E-value=4 Score=39.68 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=59.1
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++...+..+. .......|.+|+.|..+++ .+|+|.+|.|+......+. ...+.+ ...|++...
T Consensus 77 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~---~~~l~~---G~~fGe~~~-- 147 (198)
T 2ptm_A 77 PFFVGADSNFVTRVV-TLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVI---ATSLSD---GSYFGEICL-- 147 (198)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCE---EEEECT---TCEESCHHH--
T ss_pred cchhcCCHHHHHHHH-HhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeE---EEEecC---CCEechHHH--
Confidence 356678888888776 4677789999999988875 8899999999865321110 111111 123333221
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-..-++ ..+..+.+.+.+..++.+.|.
T Consensus 148 --~~~~~~-~~~~~a~~~~~l~~i~~~~f~ 174 (198)
T 2ptm_A 148 --LTRERR-VASVKCETYCTLFSLSVQHFN 174 (198)
T ss_dssp --HHSSCC-SSEEEESSCEEEEEEEHHHHH
T ss_pred --cCCCcc-ceEEEEeeEEEEEEEeHHHHH
Confidence 112223 334455578999999988775
No 64
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=78.47 E-value=3.2 Score=41.12 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhh-ccCCccCCccchhhhhhhcccc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEEL-ITPPAALIPSQGNLSFRSAETS 640 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eel-i~~~~~l~~~~~n~~l~~l~~~ 640 (846)
.+|..++..++..+. .......|++|+.|..+++ .+|+|.+|.++.....++- -.....+.| ...|++...
T Consensus 15 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~---g~~~G~~~~- 89 (227)
T 3dkw_A 15 HLFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNE---RNTFAEAMM- 89 (227)
T ss_dssp TTTSSSCHHHHHHHH-TSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECT---TEEESCTTT-
T ss_pred hhhcCCCHHHHHHHH-hhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCC---CCEeeeHHh-
Confidence 366788888888877 4778889999999988875 7899999999865322110 000111112 223333221
Q ss_pred CccccccccccceeeeecceEEEEEeccccc
Q 003116 641 GVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 641 g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-...++......+.+++.+..++.+.|.
T Consensus 90 ---~~~~~~~~~~~~a~~~~~v~~i~~~~~~ 117 (227)
T 3dkw_A 90 ---FMDTPNYVATAQAVVPSQLFRFSNKAYL 117 (227)
T ss_dssp ---TTTCSBCSSCEEESSCCEEEEEESHHHH
T ss_pred ---cCCCCCCceEEEEcCcEEEEEEeHHHHH
Confidence 1122212344555688999999998886
No 65
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=77.82 E-value=2.8 Score=38.92 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++..++..+. .......|++|+.|..+++ .+|+|.+|.++..... ..+ ..+.+ ...|++..
T Consensus 33 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~~~---~~~~~---G~~fG~~~--- 101 (160)
T 4f8a_A 33 PAFRLASDGCLRALA-MEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD-EVV---AILGK---GDVFGDVF--- 101 (160)
T ss_dssp GGGTTCCHHHHHHHH-TTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT-EEE---EEEET---TCEEECCT---
T ss_pred HhhhhCCHHHHHHHH-HhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC-EEE---EEecC---CCEeCcHH---
Confidence 466788888888776 5777889999999988876 8899999999865321 111 11111 12333332
Q ss_pred ccccc-cccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVS-FSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~-~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++.-. -++ .....+.+.+.+..++.+.|.
T Consensus 102 ~~~~~~~~~-~~~~~a~~~~~v~~i~~~~~~ 131 (160)
T 4f8a_A 102 WKEATLAQS-CANVRALTYCDLHVIKRDALQ 131 (160)
T ss_dssp TTCSSCCBC-SSEEEESSCEEEEEEEHHHHH
T ss_pred HhcCcccce-EEEEEECCceEEEEEcHHHHH
Confidence 11111 122 334455578889999988775
No 66
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=75.57 E-value=3.9 Score=40.94 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred HHHhhccHHHHHHHHHhc--cccccccCCcEEEecCc---EEEEEEeceEeeecchhh---hccCCccCCccchhhhhhh
Q 003116 565 QIFEKLTMQDMRALIAER--SKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEE---LITPPAALIPSQGNLSFRS 636 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~--~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~ee---li~~~~~l~~~~~n~~l~~ 636 (846)
.+|..++.+++..+.. . .....|++|+.|..+++ .+|+|.+|.++.....++ .+.. .+.+ ...|++
T Consensus 24 ~lf~~l~~~~~~~l~~-~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~--~~~~---G~~fG~ 97 (232)
T 1zyb_A 24 PLFQGLCHEDFTSILD-KVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIE--QIEA---PYLIEP 97 (232)
T ss_dssp GGGTTCCHHHHHHHHH-TSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEE--EEES---SEEECG
T ss_pred ccccCCCHHHHHHHHh-hCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEE--EccC---CCeeee
Confidence 4677888899988774 5 77889999999988776 789999999886532211 1100 1111 123333
Q ss_pred ccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 637 AETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 637 l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.... ..-++......+.+++.+..++.+.|.
T Consensus 98 ~~~~----~~~~~~~~~~~A~~~~~v~~i~~~~~~ 128 (232)
T 1zyb_A 98 QSLF----GMNTNYASSYVAHTEVHTVCISKAFVL 128 (232)
T ss_dssp GGGS----SSCCBCSSEEEESSCEEEEEEEHHHHH
T ss_pred hHHh----CCCCCCceEEEEccceEEEEEEHHHHH
Confidence 3211 111212334455588999999988775
No 67
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=74.89 E-value=5.1 Score=39.61 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=56.4
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.| ...|++..
T Consensus 17 ~lf~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~---g~~~G~~~ 90 (230)
T 3iwz_A 17 TPSLTLDAGTIERFL-AHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVL--GYFGS---GEFVGEMG 90 (230)
T ss_dssp -----CCHHHHHHHH-TTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEE--EEECT---TCEESCGG
T ss_pred chhccCCHHHHHHHH-HhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEE--EEecC---CCEEEehh
Confidence 467789999998877 4678889999999988865 88999999988653221 1100 01111 11233222
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. +.-..++.+ ...+.+++.+..++.+.|.
T Consensus 91 ~---~~~~~~~~~-~~~a~~~~~v~~i~~~~~~ 119 (230)
T 3iwz_A 91 L---FIESDTREV-ILRTRTQCELAEISYERLQ 119 (230)
T ss_dssp G---TSCCSBCCS-EEEESSCEEEEEEEHHHHH
T ss_pred h---hcCCCCcee-EEEEcCcEEEEEEeHHHHH
Confidence 1 111112233 3445578899999988876
No 68
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=74.84 E-value=5.3 Score=37.00 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++..++..+. .......|.+|+.|..+++ .+|+|++|.++..... +.+. .+.+.. .|++...
T Consensus 44 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~-~~~~---~~~~G~---~fGe~~~-- 113 (154)
T 3pna_A 44 VLFSHLDDNERSDIF-DAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-EWAT---SVGEGG---SFGELAL-- 113 (154)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT-EEEE---EECTTC---EECCHHH--
T ss_pred hhhhhCCHHHHHHHH-HhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECC-EEEE---EecCCC---EeeehHh--
Confidence 366788888888877 4677789999999988876 8899999999875422 2111 112221 2333221
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
...-++.+ ...+.+.+.+..++.+.|.
T Consensus 114 --~~~~~~~~-~v~A~~~~~~~~i~~~~~~ 140 (154)
T 3pna_A 114 --IYGTPRAA-TVKAKTNVKLWGIDRDSYR 140 (154)
T ss_dssp --HHCCCCSS-EEEESSCEEEEEEEHHHHH
T ss_pred --hcCCCcce-EEEECcceEEEEEeHHHHH
Confidence 11223333 4455577999999988775
No 69
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=73.94 E-value=3.9 Score=36.87 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHhhccHHHHHHHHHhcccccccc-CCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCL-RGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~-~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
+|..++..++..+. .......|. +|+.|..+++ .+|+|++|.++......+ ...+.+ ...|++..
T Consensus 23 ~f~~l~~~~~~~l~-~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~----~~~l~~---G~~fG~~~--- 91 (134)
T 2d93_A 23 AFANMTMSVRRELC-SVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGK----VENLFM---GNSFGITP--- 91 (134)
T ss_dssp TTTSSCHHHHHHHT-TTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSC----EEEECT---TCEESCCS---
T ss_pred chhhCCHHHHHHHH-HhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCc----EEEecC---CCccChhH---
Confidence 56678888888766 467778999 9999988876 789999999986532111 011111 11233222
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+...-++.+++..+.+++.+..++.+.|.
T Consensus 92 -~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 120 (134)
T 2d93_A 92 -TLDKQYMHGIVRTKVDDCQFVCIAQQDYW 120 (134)
T ss_dssp -SSCCEECCSEEEESSSSEEEEEEEHHHHH
T ss_pred -hcCCCcceeEEEEEecceEEEEEeHHHHH
Confidence 11222344444366788999999988776
No 70
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=73.21 E-value=2 Score=41.77 Aligned_cols=97 Identities=10% Similarity=0.063 Sum_probs=59.0
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhh-ccCCccCCccchhhhhhhccccC
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEEL-ITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eel-i~~~~~l~~~~~n~~l~~l~~~g 641 (846)
+|..++..++..+. .......|++|+.|..+++ .+|+|++|.++.....++- -.....+.+ ...|++...
T Consensus 46 ~f~~l~~~~l~~l~-~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~---G~~fGe~~~-- 119 (187)
T 3gyd_A 46 LFGDFSNEEVRYLC-SYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGA---GAIIGEMSM-- 119 (187)
T ss_dssp SSCCCCHHHHHHHH-TTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEET---TCEESHHHH--
T ss_pred hhhcCCHHHHHHHH-HhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccC---CCeeeeHHH--
Confidence 56678888888876 5778889999999988876 8899999998865332110 000011111 223333321
Q ss_pred ccccccccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
...-++.++ ..+.+++.+..++.+.|.
T Consensus 120 --l~~~~~~~~-v~A~~~~~v~~i~~~~~~ 146 (187)
T 3gyd_A 120 --IDGMPRSAS-CVASLPTDFAVLSRDALY 146 (187)
T ss_dssp --HHCCCCSSE-EEEEEEEEEEEEEHHHHH
T ss_pred --hCCCCeeEE-EEECCCeEEEEEcHHHHH
Confidence 112233333 444577888889888775
No 71
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=72.33 E-value=5.5 Score=39.73 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=60.5
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.+ ...|++..
T Consensus 17 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~---G~~~G~~~ 90 (237)
T 3fx3_A 17 LLIRSLPEQHVDALL-SQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVV--SVFTR---GESFGEAV 90 (237)
T ss_dssp HHHHTSCHHHHHHHH-TTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEE--EEEET---TEEECHHH
T ss_pred HhhccCCHHHHHHHH-hhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEE--EEeCC---CCEechHH
Confidence 477789989988877 4678889999999988876 78999999988653221 1100 01111 12233322
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. + ..-++.+ ...+.+++.+..++.+.|.
T Consensus 91 ~---~-~~~~~~~-~~~a~~~~~v~~i~~~~~~ 118 (237)
T 3fx3_A 91 A---L-RNTPYPV-SAEAVTPCEVMHIPSPVFV 118 (237)
T ss_dssp H---H-HTCCCSS-EEEESSSEEEEEEEHHHHH
T ss_pred H---h-cCCCCCc-eEEECCceEEEEEcHHHHH
Confidence 1 1 1222333 3445578999999988875
No 72
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=70.95 E-value=4.3 Score=39.14 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccc
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAET 639 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~ 639 (846)
.|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+.. .+.| ...|++...
T Consensus 14 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~--~~~~---g~~~ge~~~ 87 (194)
T 3dn7_A 14 KFIFLTDEDAGTLS-AFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQ--FAIE---NWWLSDYMA 87 (194)
T ss_dssp TTSCCCHHHHHHHH-TTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEE--EEET---TCEECCHHH
T ss_pred HhCCCCHHHHHHHH-HhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEE--EccC---CcEEeehHH
Confidence 45678888888876 4677889999999988876 78999999998653211 11110 0011 112222110
Q ss_pred cCccccccccccceeeeecceEEEEEeccccc
Q 003116 640 SGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 640 ~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+...-++. ....+.+++.+..++.+.|.
T Consensus 88 ---~~~~~~~~-~~~~a~~~~~v~~i~~~~~~ 115 (194)
T 3dn7_A 88 ---FQKQQPAD-FYIQSVENCELLSITYTEQE 115 (194)
T ss_dssp ---HHHTCBCS-SEEEESSCEEEEEEEHHHHH
T ss_pred ---HhcCCCCc-eEEEEECCEEEEEEeHHHHH
Confidence 01112233 33445578899999988876
No 73
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=69.95 E-value=6.7 Score=38.45 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=58.8
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++..++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.|...- .|++..
T Consensus 9 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~G~~~-~~g~~~ 84 (220)
T 3dv8_A 9 PLWNDLNTAQKKLIS-DNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITL--YRLFDMDMC-LLSASC 84 (220)
T ss_dssp GGGGTSCHHHHHHHH-TTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEE--EEECTTCEE-SGGGGG
T ss_pred hhhhcCCHHHHHHHH-hhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEE--EecCCCCee-ehhHHH
Confidence 356788888888876 4677889999999988865 88999999988653221 1100 111121100 012111
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++ ..-++. ....+.+++.+..++.+.|.
T Consensus 85 ---~~-~~~~~~-~~~~a~~~~~~~~i~~~~~~ 112 (220)
T 3dv8_A 85 ---IM-RSIQFE-VTIEAEKDTDLWIIPAEIYK 112 (220)
T ss_dssp ---GC-TTCCCC-CEEEESSCEEEEEEEHHHHH
T ss_pred ---Hh-CCCCCc-eEEEEeeeeEEEEEEHHHHH
Confidence 11 111233 34455578999999988875
No 74
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=69.40 E-value=6 Score=38.86 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=59.3
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++...++.+. .......|.+|+.|..+++ .+|+|.+|.|+..... .. .+.+.+ ...|++...
T Consensus 81 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~---~~~l~~---G~~fGe~~~-- 150 (212)
T 3ukn_A 81 PLFESASRGCLRSLS-LIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-TV---LAILGK---GDLIGSDSL-- 150 (212)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-CE---EEEECT---TCEEECSCC--
T ss_pred HHhhcCCHHHHHHHH-HHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-eE---EEEecC---CCCcCcHHh--
Confidence 456678888888776 4677779999999988876 8899999999865421 10 111112 223443321
Q ss_pred ccccc-cccccceeeeecceEEEEEeccccc
Q 003116 642 VEAVS-FSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 642 ~~~~~-~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+.-. +++.+ +..+.+.+.+..++.+.|.
T Consensus 151 -~~~~~~~~~~-~v~a~~~~~l~~i~~~~f~ 179 (212)
T 3ukn_A 151 -TKEQVIKTNA-NVKALTYCDLQYISLKGLR 179 (212)
T ss_dssp -SSSSCCBBCS-EEEESSCEEEEEEEHHHHH
T ss_pred -ccCCCCCcce-EEEEcccEEEEEEeHHHHH
Confidence 1111 13333 3445578999999988775
No 75
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=68.69 E-value=5 Score=39.27 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=59.5
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.+ ...|++..
T Consensus 5 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~---g~~~G~~~ 78 (216)
T 4ev0_A 5 PLFHGLAPEEVDLAL-SYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL--ALLGP---GELFGEMS 78 (216)
T ss_dssp GGGTTCCHHHHHHHH-TTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEE--EEECT---TCEECHHH
T ss_pred hhhcCCCHHHHHHHH-HhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEE--EEecC---CCEEeehh
Confidence 356778888888876 4677889999999988865 88999999988653211 1100 11112 11233321
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
. + ..-++. ....+.+++.+..++.+.|.
T Consensus 79 ~---~-~~~~~~-~~~~a~~~~~v~~i~~~~~~ 106 (216)
T 4ev0_A 79 L---L-DEGERS-ASAVAVEDTELLALFREDYL 106 (216)
T ss_dssp H---H-HCCBCS-SEEEESSSEEEEEEEHHHHH
T ss_pred h---c-CCCCcc-eEEEEcCCEEEEEEcHHHHH
Confidence 0 1 112233 34455588999999988875
No 76
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=68.43 E-value=8.8 Score=37.13 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=53.0
Q ss_pred cHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccccCccc
Q 003116 571 TMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAETSGVEA 644 (846)
Q Consensus 571 ~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~~g~~~ 644 (846)
+.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+.. .+ .....|++... +.
T Consensus 2 ~~~~l~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~--~~---~~g~~~G~~~~---~~ 72 (207)
T 2oz6_A 2 KLKHLDKLL-AHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIG--YL---NSGDFFGELGL---FE 72 (207)
T ss_dssp CHHHHHHHH-HSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEE--EE---ETTCEESCTTT---CC
T ss_pred CHHHHHHHH-hhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEE--Ec---CCCCCcccHHH---hc
Confidence 456666665 4677789999999988765 78999999988653221 11000 10 11223333221 11
Q ss_pred ccc---ccccceeeeecceEEEEEeccccc
Q 003116 645 VSF---SHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 645 ~~~---~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-.. ++. ....+.+++.+..++.+.|.
T Consensus 73 ~~~~~~~~~-~~~~A~~~~~v~~i~~~~~~ 101 (207)
T 2oz6_A 73 KEGSEQERS-AWVRAKVECEVAEISYAKFR 101 (207)
T ss_dssp -----CBCC-SEEEESSCEEEEEEEHHHHH
T ss_pred CCCCCCCcc-eEEEECCcEEEEEECHHHHH
Confidence 110 233 34445588999999988876
No 77
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=67.67 E-value=7.2 Score=37.87 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=55.2
Q ss_pred HhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCcc
Q 003116 567 FEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVE 643 (846)
Q Consensus 567 ~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~ 643 (846)
.+.++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....++ +....+.--.....|++... +
T Consensus 4 ~~~l~~~~l~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~--g~~~~~~~~~~g~~~G~~~~---~ 77 (210)
T 3ryp_A 4 GKPQTDPTLEWFL-SHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEE--GKEMILSYLNQGDFIGELGL---F 77 (210)
T ss_dssp ---CCCHHHHHHH-TTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTT--CCEEEEEEEETTCEESCTTT---T
T ss_pred CCcCCHHHHHHHH-HhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCC--CCEEEEEEcCCCCEeeeHHH---h
Confidence 3457777887766 5778889999999988875 789999999886532111 00000000011112222221 1
Q ss_pred ccccccccceeeeecceEEEEEeccccc
Q 003116 644 AVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 644 ~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.-..++.+ ...+.+++.+..++.+.|.
T Consensus 78 ~~~~~~~~-~~~a~~~~~v~~i~~~~~~ 104 (210)
T 3ryp_A 78 EEGQERSA-WVRAKTACEVAEISYKKFR 104 (210)
T ss_dssp STTCBCSS-EEEESSCEEEEEEEHHHHH
T ss_pred cCCCCceE-EEEECCcEEEEEEcHHHHH
Confidence 11112333 3445588999999988875
No 78
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=65.20 E-value=4.4 Score=43.00 Aligned_cols=99 Identities=8% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccC
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 641 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g 641 (846)
.+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....++--.....+.+ ...|+++.
T Consensus 19 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~---G~~fGe~~--- 91 (333)
T 4ava_A 19 DVFQGCPAEGLVSLA-ASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALP---GMIVGEIA--- 91 (333)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECT---TCEESHHH---
T ss_pred HhHhcCCHHHHHHHH-hhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecC---CCEeeHHH---
Confidence 467788888888876 4677789999999988876 8899999998865332110000111112 12333322
Q ss_pred ccccccccccceeeeecceEEEEEecccccc
Q 003116 642 VEAVSFSHQGSCYLVETRARVIIFDIAAFEA 672 (846)
Q Consensus 642 ~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~~ 672 (846)
+...-++.+ +..+.+.+.+..++.+.|..
T Consensus 92 -l~~~~~~~~-~v~A~~~~~~~~i~~~~~~~ 120 (333)
T 4ava_A 92 -LLRDSPRSA-TVTTIEPLTGWTGGRGAFAT 120 (333)
T ss_dssp -HHHTCBCSS-EEEESSCEEEEEECHHHHHH
T ss_pred -hcCCCCceE-EEEEecCEEEEEEcHHHHHH
Confidence 111223334 44455889999999998863
No 79
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=61.63 E-value=27 Score=34.99 Aligned_cols=68 Identities=12% Similarity=-0.001 Sum_probs=51.1
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+.+|+.+-..-.+.+.+++|++|.+++... ++. ..+.+|+++ +.....++.+.|.+++.++.|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~---~~~---~~l~~Gd~~-----~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE---NNK---KTISNGDFL-----EITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES---SCE---EEEETTEEE-----EECSSCCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC---CEE---EEECCCCEE-----EECCCCCEEEEECCCcEEEEE
Confidence 44667889999988878899999999999999764 222 467788775 222233567788999999877
No 80
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=61.32 E-value=32 Score=29.90 Aligned_cols=66 Identities=15% Similarity=0.029 Sum_probs=41.4
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
...+.+|..+-....+...+++|++|.+.+... ++. ..+.+|+++= +-.+.++ .+.+.+++.++.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~---~~~---~~l~~Gd~i~---i~~~~~H--~~~~~~~~~~~~i 107 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITFD---DQK---IDLVPEDVLM---VPAHKIH--AIAGKGRFKMLQI 107 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEET---TEE---EEECTTCEEE---ECTTCCB--EEEEEEEEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEEC---CEE---EEecCCCEEE---ECCCCcE--EEEeCCCcEEEEE
Confidence 334567776654555678899999999998763 322 4788998762 1123343 4445567666654
No 81
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=57.58 E-value=5.8 Score=39.36 Aligned_cols=96 Identities=10% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhh---hccCCccCCccchhhhhhhcc
Q 003116 565 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEE---LITPPAALIPSQGNLSFRSAE 638 (846)
Q Consensus 565 ~~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~ee---li~~~~~l~~~~~n~~l~~l~ 638 (846)
.+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....++ .+. ..+.+ ...|++..
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~---g~~~G~~~ 85 (231)
T 3e97_A 12 PLFQNVPEDAMREAL-KVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL--GDIYA---PGVVGETA 85 (231)
T ss_dssp GGGTTCCHHHHHHHH-HTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEE--EEEES---SEEESTTT
T ss_pred hhhccCCHHHHHHHH-HhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEE--EecCC---CCEEeeHH
Confidence 467788888888877 4678889999999987765 799999999886532211 110 11111 11233322
Q ss_pred ccCccccccccccceeeeecceEEEEEeccccc
Q 003116 639 TSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 639 ~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++ ..-++.+ ...+.+++.+..++.+.|.
T Consensus 86 ---~~-~~~~~~~-~~~a~~~~~v~~i~~~~~~ 113 (231)
T 3e97_A 86 ---VL-AHQERSA-SVRALTPVRTLMLHREHFE 113 (231)
T ss_dssp ---TT-CCCCCCE-EEEESSCEEEEEECHHHHH
T ss_pred ---Hh-CCCCceE-EEEECCcEEEEEEeHHHHH
Confidence 11 1122333 4445578899999988776
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=56.72 E-value=39 Score=29.66 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=44.2
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFF 530 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~ 530 (846)
....+++|..+-..-.+.+.+++|++|.+++... ++. ..+.+|+++=- .......+.+.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~---~~~---~~l~~Gd~i~i-----p~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD---GAQ---RRLHQGDLLYL-----GAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEET---TEE---EEECTTEEEEE-----CTTCCEEEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEEC---CEE---EEECCCCEEEE-----CCCCcEEEEeCCCcEEEE
Confidence 3556778888766656678999999999998763 222 47888887622 222345566777765443
No 83
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=55.53 E-value=15 Score=37.41 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=53.3
Q ss_pred hccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccccCc
Q 003116 569 KLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAETSGV 642 (846)
Q Consensus 569 ~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~~g~ 642 (846)
.++.+++..+. .......|++|+.|..+++ .+|+|++|.++.....+ +.+. ..+.| ...|++...
T Consensus 56 ~l~~~~l~~l~-~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~--~~~~~---G~~~Ge~~~--- 126 (260)
T 3kcc_A 56 PQTDPTLEWFL-SHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL--SYLNQ---GDFIGELGL--- 126 (260)
T ss_dssp ---CHHHHHHH-TTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEE--EEEET---TCEESCTTT---
T ss_pred CCCHHHHHHHH-hhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEE--EEcCC---CCEEeehHH---
Confidence 35666777665 5677889999999988875 78999999998653211 1100 01111 112332221
Q ss_pred cccccccccceeeeecceEEEEEeccccc
Q 003116 643 EAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 643 ~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+.-..++.+ ...+.+++.+..++.+.|.
T Consensus 127 ~~~~~~~~~-~~~A~~~~~l~~i~~~~~~ 154 (260)
T 3kcc_A 127 FEEGQERSA-WVRAKTACEVAEISYKKFR 154 (260)
T ss_dssp TSTTCBCCS-EEEESSCEEEEEEEHHHHH
T ss_pred hCCCCCCce-EEEECCCeEEEEEcHHHHH
Confidence 111112333 3445588999999988875
No 84
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=54.48 E-value=8.9 Score=45.61 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=69.9
Q ss_pred EEcHHHHHHHHhhChHHHHHH-HHHHHHHHHHhhhHHHHhhccHHHHHHHHHhccc-cccccCCcEEEecCc---EEEEE
Q 003116 530 FIESDKILSILRSDPAVEDFL-WQQSAIALSRILLPQIFEKLTMQDMRALIAERSK-MTTCLRGEIIEIPYH---CIGFL 604 (846)
Q Consensus 530 ~I~~~~f~~ll~~~p~~~~~l-~~~l~~rL~~l~~~~~~e~l~~~dlr~l~~~~~~-~~~y~~ge~I~~~~~---~~~iL 604 (846)
..|.+.|+.++...|.-+... ...+...+.+ ..+|..++..++..+.. ... ...|++|+.|..+++ .+|+|
T Consensus 5 ~~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~---~~lF~~Ls~~~l~~L~~-~~~~~~~~~kGe~I~~eGd~~~~lyiI 80 (694)
T 3cf6_E 5 SFPDAHMRMILRKPPGQRTVDDLEIIYDELLH---IKALSHLSTTVKRELAG-VLIFESHAKGGTVLFNQGEEGTSWYII 80 (694)
T ss_dssp ------CHHHHHSCGGGCCHHHHHHHHHHHTT---CGGGTTSCHHHHHHHHT-TCEEEEECSTTCEEECTTSBCCEEEEE
T ss_pred cCcHHHHHHHHcCChhhCCHHHHHHHHHHHHc---ChhhccCCHHHHHHHHH-hcceEEEECCCCEEECCCCcCCeEEEE
Confidence 356778888887766543211 1222222332 24677888888888763 444 568999999988876 88999
Q ss_pred EeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeeeecceEEEEEeccccc
Q 003116 605 LEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 605 ~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++|.++.....+.. ...+.+ ...|++... + ..-++.+++.+++.++.+..++.+.|+
T Consensus 81 lsG~V~v~~~g~~i---l~~l~~---Gd~fGe~al---~-~~~~~~~tv~A~edd~~ll~I~~~~f~ 137 (694)
T 3cf6_E 81 LKGSVNVVIYGKGV---VCTLHE---GDDFGKLAL---V-NDAPRAASIVLREDNCHFLRVDKEDFN 137 (694)
T ss_dssp EESEEEEEETTTEE---EEEEET---TCEECHHHH---H-HTCBCSSEEEECSSSEEEEEEEHHHHH
T ss_pred EEEEEEEEEeCCEE---EEEeCC---CCEeehHHH---h-CCCCceEEEEEeeCceEEEEEeHHHHH
Confidence 99999875432110 111111 113333221 1 122344444444336999999977764
No 85
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=54.32 E-value=6.5 Score=38.85 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccc
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAET 639 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~ 639 (846)
+|..++..++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+. ..+.| ...|++...
T Consensus 13 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~---G~~~G~~~~ 86 (227)
T 3d0s_A 13 IFQGVEPSAIAALT-KQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL--TIMGP---SDMFGELSI 86 (227)
T ss_dssp TTSSCCSSTTHHHH-TTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEE--EEECT---TCEESCHHH
T ss_pred hhcCCCHHHHHHHH-hhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEE--EEecC---CCEEeeHHH
Confidence 55667777777766 4677789999999988765 78999999988653221 1100 01111 113332221
Q ss_pred cCccccccccccceeeeecceEEEEEeccccc
Q 003116 640 SGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 640 ~g~~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
+ ..-++.++ ..+.+++.+..++.+.|.
T Consensus 87 ---~-~~~~~~~~-~~A~~~~~v~~i~~~~~~ 113 (227)
T 3d0s_A 87 ---F-DPGPRTSS-ATTITEVRAVSMDRDALR 113 (227)
T ss_dssp ---H-SCSCCSSE-EEESSCEEEEEEEHHHHH
T ss_pred ---c-CCCCceeE-EEEcccEEEEEEeHHHHH
Confidence 1 11223333 444578999999988775
No 86
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=51.09 E-value=63 Score=30.61 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=50.2
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEE-cceEEEEEEc
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT-DSVVLCFFIE 532 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A-~~~~~ll~I~ 532 (846)
....+.+|..+-..--....+++|++|.+.+... ++ ...+.+|+++=- -.+.+....... .+++.++++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~~l~i~ 129 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD---DR---VEPLTPLDCVYI---APHAWHQIHATGANEPLGFLCIV 129 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET---TE---EEEECTTCEEEE---CTTCCEEEEEESSSCCEEEEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC---CE---EEEECCCCEEEE---CCCCcEEEEeCCCCCCEEEEEEE
Confidence 3456677776544444578899999999998753 22 246788887621 224444433333 4455544442
Q ss_pred ----------HHHHHHHHhhChHHHHH
Q 003116 533 ----------SDKILSILRSDPAVEDF 549 (846)
Q Consensus 533 ----------~~~f~~ll~~~p~~~~~ 549 (846)
...-..-+.++|.+..+
T Consensus 130 ~~~~d~p~~p~~~~~~~l~~~~~~~~~ 156 (167)
T 3ibm_A 130 DSDRDRPQRPDADDLARMCADPAVARR 156 (167)
T ss_dssp ESSCCCCBCCCHHHHHHHTTSHHHHHH
T ss_pred eCCcCcccCCCHHHHHHHHcChHHHHh
Confidence 23333335577776654
No 87
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=48.67 E-value=1.1e+02 Score=27.14 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=32.6
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
...+.+|..+-.. ...+.+++|++|.+++.. +++. ..+.+||++
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v 87 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET---VTAGPGEIV 87 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE---EEECTTCEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEE
Confidence 4567788766443 377899999999999976 2432 468899986
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=48.63 E-value=86 Score=26.92 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=43.1
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+++|..+-..-.+...+++|++|.+.+... ++. ..+.+|+++=- .......+.+.+++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i-----p~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVD---GVI---KVLTAGDSFFV-----PPHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEET---TEE---EEECTTCEEEE-----CTTCCEEEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEEC---CEE---EEeCCCCEEEE-----CcCCceeeEeCCCcEEEEE
Confidence 34556778876543333467899999999998762 332 47889988521 2222345566667777665
No 89
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=48.48 E-value=75 Score=27.27 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=42.1
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
....+++|..+-..-.....+++|++|.+.+... ++. ..+.+|+++=- =.+. ...+.+.+++.++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---p~~~--~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID---QET---YRVAEGQTIVM---PAGI--PHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEET---TEE---EEEETTCEEEE---CTTS--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC---CEE---EEECCCCEEEE---CCCC--CEEEEECCCceEEEE
Confidence 3456678877644444467899999999998753 322 46889988621 1223 344566667766654
No 90
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=47.33 E-value=9.4 Score=37.51 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCc
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGV 642 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~ 642 (846)
+|..++..++..+. .......|++|+.|..+++ .+|+|.+|.++..... + + +...-..+..=+-.|.
T Consensus 11 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~------G--~~~~~~~~~~G~~~G~ 80 (220)
T 2fmy_A 11 LLEVLNSEEYSGVL-KEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAY-E------D--KEFTLAILEAGDIFCT 80 (220)
T ss_dssp HHHHTTSGGGTTTG-GGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEEC-S------S--CEEEEEEEETTCEEES
T ss_pred hhhcCCHHHHHHHH-HhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECC-C------C--CEEEEEEcCCCCEeCC
Confidence 55567766666655 4577779999999988765 7899999998863111 1 0 0000001111112222
Q ss_pred cccccccccceeeeecceEEEEEeccccc
Q 003116 643 EAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 643 ~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
++.+++ .+.+++.+..++.+.|.
T Consensus 81 -----~~~~~~-~A~~~~~v~~i~~~~~~ 103 (220)
T 2fmy_A 81 -----HTRAFI-QAMEDTTILYTDIRNFQ 103 (220)
T ss_dssp -----CSSSEE-EESSSEEEEEEEHHHHH
T ss_pred -----ccceEE-EEcCcEEEEEEeHHHHH
Confidence 344444 44578999999988875
No 91
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=47.07 E-value=44 Score=31.83 Aligned_cols=45 Identities=9% Similarity=-0.166 Sum_probs=30.4
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
...+.+|..+-..-.....+++|++|.+++... ++. ..+.+|+++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~---g~~---~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVG---RAV---SAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEET---TEE---EEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEEC---CEE---EEeCCCCEE
Confidence 345567766544444567899999999998653 322 467888876
No 92
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=46.86 E-value=27 Score=34.76 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.9
Q ss_pred hccHHHHHHHHH-hccccccccCCcEEEecCc---EEEEEEeceEeeec
Q 003116 569 KLTMQDMRALIA-ERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 613 (846)
Q Consensus 569 ~l~~~dlr~l~~-~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~ 613 (846)
+++.+++..++. .......|++|+.|..+++ .+|+|.+|.++...
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~ 51 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTS 51 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEE
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEE
Confidence 456677777663 2467778999999988765 78999999988653
No 93
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=44.31 E-value=9.6 Score=38.40 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=53.2
Q ss_pred hccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCcccc
Q 003116 569 KLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAV 645 (846)
Q Consensus 569 ~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~ 645 (846)
.++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.....++ + +...-..+..=+-.|. .+
T Consensus 19 ~l~~~~l~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~------G--~~~~~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 19 FFPIEKLRNYT-QMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED------G--SEKLLYYAGGNSLIGK-LY 88 (250)
T ss_dssp CSCCGGGGGGG-GGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTT------S--CEEEEEEECTTCEECC-CS
T ss_pred hCCHHHHHHHH-hhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCC------C--CEEEEEEecCCCEEee-ec
Confidence 45556666555 4677789999999988875 789999999886533211 0 0000001111122222 11
Q ss_pred ccccccceeeeecceEEEEEeccccc
Q 003116 646 SFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 646 ~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.-.+ .....+.+++.+..++.+.|.
T Consensus 89 ~~~~-~~~~~A~~~~~v~~i~~~~~~ 113 (250)
T 3e6c_C 89 PTGN-NIYATAMEPTRTCWFSEKSLR 113 (250)
T ss_dssp CCSC-CEEEEESSSEEEEEECHHHHH
T ss_pred CCCC-ceEEEEcccEEEEEEcHHHHH
Confidence 1112 333445578899999988875
No 94
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=41.81 E-value=55 Score=30.76 Aligned_cols=45 Identities=11% Similarity=-0.068 Sum_probs=30.2
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
...+.+|..+-..-.....+++|++|.+++... ++. ..+.+|+++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~---g~~---~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVG---ETI---SDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEET---TEE---EEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEEC---CEE---EEeCCCCEE
Confidence 344567766544444567799999999999753 322 467788876
No 95
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=40.55 E-value=7.2 Score=38.49 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=52.5
Q ss_pred HHhhccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCc
Q 003116 566 IFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGV 642 (846)
Q Consensus 566 ~~e~l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~ 642 (846)
+|..++.+++..+. .......|++|+.|..+++ .+|+|.+|.++.. ..++ + +...-..+..=+-.|
T Consensus 7 ~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~------G--~~~~~~~~~~G~~fG- 75 (222)
T 1ft9_A 7 IANVLLSPDGETFF-RGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGE------E--REISLFYLTSGDMFC- 75 (222)
T ss_dssp THHHHTSTTTTTTT-TTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEET------T--EEEEEEEEETTCEEE-
T ss_pred hhhcCCHHHHHHHH-hhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCC------C--CEEEEEEcCCCCEec-
Confidence 34455656665554 3567779999999988765 7899999998864 2111 0 000000111111222
Q ss_pred cccccccccceeeeecceEEEEEeccccc
Q 003116 643 EAVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 643 ~~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
-++.++ ..+.+++.+..++.+.|.
T Consensus 76 ----~~~~~~-~~A~~~~~v~~i~~~~~~ 99 (222)
T 1ft9_A 76 ----MHSGCL-VEATERTEVRFADIRTFE 99 (222)
T ss_dssp ----SCSSCE-EEESSCEEEEEECHHHHH
T ss_pred ----CCCCEE-EEEccceEEEEEeHHHHH
Confidence 233333 444578999999988775
No 96
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=38.12 E-value=45 Score=31.76 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=43.9
Q ss_pred ccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccccCccccccccccceeeeecc
Q 003116 586 TTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETR 659 (846)
Q Consensus 586 ~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~ve~~ 659 (846)
..|++|+.|..+++ .+|+|.+|.++.....+ +.+ ...+.| ...|++ . ++ ..-++.+ ...+.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~---G~~~Ge-~---~~-~~~~~~~-~~~A~~~ 70 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLP---GDYFGE-E---AL-EGKAYRY-TAEAMTE 70 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECT---TCEECG-G---GG-TCSBCSS-EEEESSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecC---CCEech-h---hh-CCCCcee-EEEECCc
Confidence 46889999987765 78999999988653211 110 011112 123333 2 11 1122333 4444588
Q ss_pred eEEEEEeccccc
Q 003116 660 ARVIIFDIAAFE 671 (846)
Q Consensus 660 ~~i~~~d~~~~~ 671 (846)
+.+..++.+.|.
T Consensus 71 ~~v~~i~~~~~~ 82 (195)
T 3b02_A 71 AVVQGLEPRAMD 82 (195)
T ss_dssp EEEEEECGGGCC
T ss_pred EEEEEEcHHHcC
Confidence 999999999988
No 97
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=37.98 E-value=91 Score=29.88 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=41.8
Q ss_pred EEEEcCCCEEe---cCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEc---ceEEE
Q 003116 455 EIMKLSGVTLY---REGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTD---SVVLC 528 (846)
Q Consensus 455 ~~~~~kGe~I~---~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~---~~~~l 528 (846)
...+++|...- ..-.+...+++|++|.+.+...+.++.. ...+.+||++=-- .+.+ +.+.+. ++|.+
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~--~~~l~~GD~~~~~---~~~~--H~~~n~~~~~~~~~ 193 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVE---EHVP--HAFTAAKGTGSAKL 193 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEEC---TTCC--EEEEESTTSCCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc--cEEECCCCEEEeC---CCCc--eEEEecCCCCCeEE
Confidence 44567777553 2233457899999999999874422212 2578999987321 2333 344444 56666
Q ss_pred EEE
Q 003116 529 FFI 531 (846)
Q Consensus 529 l~I 531 (846)
+.+
T Consensus 194 l~v 196 (198)
T 2bnm_A 194 IAV 196 (198)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 98
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=37.88 E-value=37 Score=32.69 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=36.9
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+....+++|......-..++.+++|++|.+++...+.++... ..+.+||++
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~--~~l~~GDv~ 93 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDT--YKLDQGDAI 93 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEE--EEEETTEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEE--EEECCCCEE
Confidence 345567788776554344689999999999998876554332 578899886
No 99
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=37.78 E-value=61 Score=31.72 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred cCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEE--cceEEEE
Q 003116 452 STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT--DSVVLCF 529 (846)
Q Consensus 452 ~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A--~~~~~ll 529 (846)
.+....+.+|..+-.....+..+++|++|.+. +.+ ..+.+|+|+=.- .....+..+ .+.|.||
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~------~~~~~Gd~~~~p-----~g~~H~p~a~~~~gc~~l 190 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET------DRFGAGDIEIAD-----QELEHTPVAERGLDCICL 190 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS------SEEETTCEEEEC-----SSCCCCCEECSSSCEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc------EEECCCeEEEeC-----cCCccCCEeCCCCCEEEE
Confidence 34577889999999888899999999999966 211 357788886321 122344555 6788887
Q ss_pred EE
Q 003116 530 FI 531 (846)
Q Consensus 530 ~I 531 (846)
.+
T Consensus 191 ~~ 192 (195)
T 2q1z_B 191 AA 192 (195)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 100
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=35.25 E-value=22 Score=34.69 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHhccccccccCCcEEEecCc---EEEEEEeceEeeecchh---hhccCCccCCccchhhhhhhccccCcc
Q 003116 570 LTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQE---ELITPPAALIPSQGNLSFRSAETSGVE 643 (846)
Q Consensus 570 l~~~dlr~l~~~~~~~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~~~e---eli~~~~~l~~~~~n~~l~~l~~~g~~ 643 (846)
++..++..+. .......|++|+.|..+++ .+|+|.+|.++.....+ +.+.. .+.+.. .|++... +
T Consensus 10 ~~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~--~~~~G~---~~G~~~~---~ 80 (213)
T 1o5l_A 10 HHHMDLKKLL-PCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEID--EIKPVQ---IIASGFI---F 80 (213)
T ss_dssp ---CCGGGGG-GGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEE--EECSSE---ESSGGGT---T
T ss_pred hccCCHHHHh-cccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEE--EecCCC---EeeeHHH---h
Confidence 3334444433 4567778999999988775 78999999988653211 11100 111111 2332221 1
Q ss_pred ccccccccceeeeecceEEEEEeccccc
Q 003116 644 AVSFSHQGSCYLVETRARVIIFDIAAFE 671 (846)
Q Consensus 644 ~~~~~~~~~~~~ve~~~~i~~~d~~~~~ 671 (846)
.-.-++. ....+.+++.+..++.+.|.
T Consensus 81 ~~~~~~~-~~~~A~~~~~v~~i~~~~~~ 107 (213)
T 1o5l_A 81 SSEPRFP-VNVVAGENSKILSIPKEVFL 107 (213)
T ss_dssp SSSCBCS-SEEEESSSEEEEEEEHHHHH
T ss_pred cCCCCce-EEEEEccceEEEEEeHHHHH
Confidence 0011233 34455588999999988775
No 101
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=35.04 E-value=98 Score=30.75 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=45.7
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEE-cceEEEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT-DSVVLCFFI 531 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A-~~~~~ll~I 531 (846)
....+++|+.+-..-.+.+.+++|++|.+++... ++. ..+.+|+++=- ....+..+.+ .++++++.+
T Consensus 156 ~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~---g~~---~~l~~Gd~i~i-----p~~~~H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 156 TIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD---GKP---FIVKKGESAVL-----PANIPHAVEAETENFKMLLI 223 (227)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET---TEE---EEEETTEEEEE-----CTTSCEEEECCSSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC---CEE---EEECCCCEEEE-----CCCCcEEEEeCCCCEEEEEE
Confidence 4567789998865555677899999999998753 322 46788887621 2223455677 778776653
No 102
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=33.57 E-value=1.2e+02 Score=26.51 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=33.5
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+....+++|..+-..-.+...+++|++|.+.+... ++. ..+.+|+++
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG---EET---RVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET---TEE---EEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC---CEE---EEeCCCCEE
Confidence 34566778887754445568899999999999763 222 467888875
No 103
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=30.00 E-value=2.5e+02 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=31.7
Q ss_pred EEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 455 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
...+.+|..-.. .+...+++|++|.+.+...+ ++. ..+.+||++
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~--g~~---~~l~~GD~i 78 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTED--GKK---YVIEKGDLV 78 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT--CCE---EEEETTCEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEECC--CCE---EEECCCCEE
Confidence 566778876554 44688999999999997631 322 468899986
No 104
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=29.78 E-value=56 Score=31.45 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+++|...-..-.....+++|++|.+++...+ ++. ..+.+||++ . -.+.++.+.-...++++++.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~--ge~---~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD--GAK---RTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG--GCE---EEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC--CeE---EEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 345567787754333334456889999999997542 322 478999997 2 245555444444455655543
No 105
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=29.19 E-value=1.2e+02 Score=25.07 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=31.0
Q ss_pred eEEEEcCCCEEecCCCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 454 KEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
....+.+|..+-..-.. .+.+++|++|.+.+... ++. ..+.+|+++
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~---~~~---~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG---EEE---ALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET---TEE---EEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC---CEE---EEeCCCCEE
Confidence 34566788776433333 35699999999998753 222 478899886
No 106
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=29.13 E-value=1.1e+02 Score=25.71 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=32.3
Q ss_pred eEEEEcCCCEEecC--CCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 454 KEIMKLSGVTLYRE--GSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 454 ~~~~~~kGe~I~~e--Gd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
....+.+|..+-.. -.. ...+++|++|.+.+... ++. ..+.+|+++
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD---GHT---QALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET---TEE---EEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC---CEE---EEeCCCCEE
Confidence 45567888876544 334 67899999999998763 222 467888876
No 107
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=27.93 E-value=1e+02 Score=26.94 Aligned_cols=71 Identities=7% Similarity=0.004 Sum_probs=41.0
Q ss_pred CeEEEEcCCCEEecCCCCC-CeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSKP-SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~-~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+++|..+-..-... ..+|+|++|.+.+... +++. ..+.+|+++= +-.+.++.......+++.++.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~~~---~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NGIV---THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TTCE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CCeE---EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 3456677888775554453 6788999999998642 2332 4678888752 1134444333333344554443
No 108
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.38 E-value=1.5e+02 Score=31.76 Aligned_cols=75 Identities=8% Similarity=-0.060 Sum_probs=45.4
Q ss_pred CeEEEEcCCCEEecCCCCC-CeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 453 TKEIMKLSGVTLYREGSKP-SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 453 ~~~~~~~kGe~I~~eGd~~-~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
+....+++|...-..-.+. +.+++|++|.+++...+.+|+.. ...+.+||+|=-- .+.++.......+++.++.+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~-~~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR-TFNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE-EEEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE-EEEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 3455678888764433344 78999999999998765444312 2578899987321 23333332223355666655
No 109
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=26.93 E-value=1.2e+02 Score=34.14 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHhhcCeEEEEcCCCEEecCCC-CCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 446 REPLELSTKEIMKLSGVTLYREGS-KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 446 l~~L~~~~~~~~~~kGe~I~~eGd-~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+..+--.+....+.+|..+-..=. .++.+++|++|.+++...+..|.......+.+||+|
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 344444566777888887644333 368999999999999888765544433578999987
No 110
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=26.71 E-value=99 Score=34.77 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=39.7
Q ss_pred cCeEEEEcCCCEEecCCCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 452 STKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 452 ~~~~~~~~kGe~I~~eGd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
.+....+.+|.++-..=.+ ++.+++|++|.+++...+.+|.......+.+||+|
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 4456778899876544333 68999999999999888765544434578899986
No 111
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=26.63 E-value=1.9e+02 Score=27.85 Aligned_cols=63 Identities=13% Similarity=0.027 Sum_probs=40.2
Q ss_pred EEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcc-eEEEEEEcH
Q 003116 463 TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDS-VVLCFFIES 533 (846)
Q Consensus 463 ~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~-~~~ll~I~~ 533 (846)
+.++ -++.+.+|++++|.+.+...+.|+ .. ...+.+|++|=-- .|.+ .+-++.+ ++.++.|.+
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d~g~-~~-~v~l~eGE~f~lP---~gvp--H~P~r~~~e~~~lviE~ 111 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWVDGR-RE-RADLKEGDIFLLP---PHVR--HSPQRPEAGSACLVIER 111 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTE-EE-EEEECTTCEEEEC---TTCC--EEEEBCCTTCEEEEEEE
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEcCCc-ee-eEEECCCCEEEeC---CCCC--cCccccCCCCEEEEEEe
Confidence 6666 447899999999999998876432 22 2578999987321 2222 3344444 666666544
No 112
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=26.28 E-value=1.1e+02 Score=34.60 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=41.8
Q ss_pred HHHhhcCeEEEEcCCCEEecCCCC-CCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 447 EPLELSTKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 447 ~~L~~~~~~~~~~kGe~I~~eGd~-~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
..+--.+....+.+|.++-..=.+ ++.+++|++|.+++...+.+|.......+.+||+|
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 334445567778888876443333 68999999999999887765544434578999986
No 113
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=25.34 E-value=67 Score=31.84 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=26.7
Q ss_pred hccc---cccccCCcEEEecCc---EEEEEEeceEeeec
Q 003116 581 ERSK---MTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 613 (846)
Q Consensus 581 ~~~~---~~~y~~ge~I~~~~~---~~~iL~~G~v~~~~ 613 (846)
.... ...|++|+.|..+++ .+|+|++|.++...
T Consensus 38 ~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~ 76 (243)
T 3la7_A 38 TGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSR 76 (243)
T ss_dssp CSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEE
T ss_pred hccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEE
Confidence 3455 778999999988766 78999999988653
No 114
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=24.51 E-value=2.1e+02 Score=26.51 Aligned_cols=64 Identities=6% Similarity=0.058 Sum_probs=40.3
Q ss_pred cCCCCCCeEEEEeeeEEEEEEEec--CCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHH
Q 003116 466 REGSKPSGIWLISNGVVKWTSKSI--RNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 534 (846)
Q Consensus 466 ~eGd~~~~lY~I~sG~Vkv~~~~~--g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~ 534 (846)
+.-+..|.+|+|++|.+.+...+. +.-..-...+.+|+++=- .. --...-.|.++|.++.|...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV----Pk-GveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV----PA-ECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE----CT-TCEEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe----CC-CccCcccCCCceEEEEEEeC
Confidence 344567999999999999987742 110111246788887621 11 12345567788888887654
No 115
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=24.12 E-value=2.6e+02 Score=24.22 Aligned_cols=79 Identities=8% Similarity=0.082 Sum_probs=45.7
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceE--EEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVV--LCFFI 531 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~--~ll~I 531 (846)
....+++|...-..-.....+++|++|.+.+... ++. ..+.+|+++=- -.+.+........+++ .++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~---~~~---~~l~~Gd~~~i---~~~~~H~~~~~~~~~~~~~~i~f 107 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN---DED---FPVTKGDLIII---PLDSEHHVINNNQEDFHFYTIWW 107 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEET---TEE---EEEETTCEEEE---CTTCCEEEEECSSSCEEEEEEEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEEC---CEE---EEECCCcEEEE---CCCCcEEeEeCCCCCEEEEEEEE
Confidence 3455667775443334567899999999998763 322 46788887621 1233333332223443 34566
Q ss_pred cHHHHHHHHh
Q 003116 532 ESDKILSILR 541 (846)
Q Consensus 532 ~~~~f~~ll~ 541 (846)
+.+.+..++.
T Consensus 108 ~~~~~~~~~~ 117 (128)
T 4i4a_A 108 DKESTLNFLT 117 (128)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7666655543
No 116
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.73 E-value=1.7e+02 Score=33.22 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=42.7
Q ss_pred HHHhhcCeEEEEcCCCEEecC-CCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 447 EPLELSTKEIMKLSGVTLYRE-GSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 447 ~~L~~~~~~~~~~kGe~I~~e-Gd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
..|--.+....+.+|.++-.. --.++.+++|++|.+++...+..|.......+.+||+|
T Consensus 390 ~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 390 RFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 334345567788888887533 23368999999999999988765544445689999987
No 117
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=22.42 E-value=2.5e+02 Score=26.24 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=31.8
Q ss_pred CCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 470 KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 470 ~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
..+.+++|++|.+++.. +|+. ..+.+||+|=- =.|.+... .+.++|+++++
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i~i---P~G~~h~~--~n~~~a~~l~V 133 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGRK---VSASSGELIFI---PKGSKIQF--SVPDYARFIYV 133 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEE---CTTCEEEE--EEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCEE---EEEcCCCEEEE---CCCCEEEE--EeCCCEEEEEE
Confidence 46789999999999985 3432 47889998621 12333333 33366666554
No 118
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=22.35 E-value=2.3e+02 Score=25.72 Aligned_cols=51 Identities=6% Similarity=-0.078 Sum_probs=30.9
Q ss_pred EEEEcCCCEEecCCC-CCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 455 EIMKLSGVTLYREGS-KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 455 ~~~~~kGe~I~~eGd-~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
...+++|..+-..-. ..+.+++|++|.+.+...+..........+.+|+++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 445677765532222 345899999999999876532110011467888875
No 119
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.32 E-value=1.9e+02 Score=26.38 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=41.6
Q ss_pred eEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEE
Q 003116 454 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 531 (846)
Q Consensus 454 ~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I 531 (846)
....+++|..+-..--....+++|++|.+.+...+ . . ...+.+|+++= +-.+.+........+++.++.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~-~--~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--K-P--ARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--S-C--CEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECC--E-E--EEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 35566788776433334578999999999987532 2 1 13577888763 2234444444444445555544
No 120
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=21.64 E-value=80 Score=30.58 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=31.4
Q ss_pred HhcCCCCCCCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEE
Q 003116 432 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIW 475 (846)
Q Consensus 432 L~~~~lF~~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY 475 (846)
.-.+|+|.+++-.+.+.++.. ..|++|++..+.++++-
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lt 48 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCV 48 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEE
Confidence 346899999999999888877 25999999999877643
No 121
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.44 E-value=1.7e+02 Score=30.32 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=46.0
Q ss_pred EEcCCC---EEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcH
Q 003116 457 MKLSGV---TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 533 (846)
Q Consensus 457 ~~~kGe---~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~ 533 (846)
.+-.|. +.++ -+..+.+|++++|...+...+.| +.. ...+++|++|= +-. .-+++=++.++|.++.|.+
T Consensus 35 ~~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g-~~~-~V~i~eGemfl----lP~-gv~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 35 MFIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQG-KHR-DVVIRQGEIFL----LPA-RVPHSPQRFANTVGLVVER 106 (286)
T ss_dssp EEECSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETT-EEE-EEEECTTEEEE----ECT-TCCEEEEECTTCEEEEEEE
T ss_pred EEEeCCCcCccCc-CCCCCeEEEEEeCeEEEEEEeCC-cee-eEEECCCeEEE----eCC-CCCcCCcccCCeEEEEEee
Confidence 344677 7777 67789999999999999887743 222 24788988873 222 1234444566777777764
No 122
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=20.85 E-value=1.9e+02 Score=32.19 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=43.2
Q ss_pred HHHHhhcCeEEEEcCCCEEecC-CCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCee
Q 003116 446 REPLELSTKEIMKLSGVTLYRE-GSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 505 (846)
Q Consensus 446 l~~L~~~~~~~~~~kGe~I~~e-Gd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~f 505 (846)
+..+--.+....+.+|.+..-. --.+..+++|++|.+++...+.+|.......+.+||+|
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 3444445566778888876433 23468999999999999998766655544579999987
No 123
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=20.10 E-value=1.4e+02 Score=25.31 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=39.8
Q ss_pred EEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeEEEEcceEEEEEEcHHH
Q 003116 457 MKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 535 (846)
Q Consensus 457 ~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~tv~A~~~~~ll~I~~~~ 535 (846)
...+|+...+.-+....+++|++|.+.+...+ ++. ..+.+|+++=- -.+.+.. ..+.+++.++.++...
T Consensus 34 ~~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~--~~~---~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~l~i~~~~ 102 (107)
T 2i45_A 34 VKLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD--GGS---MTIREGEMAVV---PKSVSHR--PRSENGCSLVLIELSD 102 (107)
T ss_dssp EEEEEECCCBCC--CCEEEEESSSCEEEEETT--SCE---EEECTTEEEEE---CTTCCEE--EEEEEEEEEEEEECC-
T ss_pred EECCCCCcceeCCCCCEEEEEEeCEEEEEECC--CcE---EEECCCCEEEE---CCCCcEe--eEeCCCeEEEEEECCC
Confidence 33456544333333388999999999987632 122 46889988621 1234433 3344678887776543
Done!