BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003117
(846 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/474 (53%), Positives = 332/474 (70%), Gaps = 49/474 (10%)
Query: 415 LTKIREIVESNESRR--LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVF 472
L K++ + +ES++ + K PKGTRD++ QMAVREK F +I FKRHGA +DTPVF
Sbjct: 49 LLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVF 108
Query: 473 EMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYR 532
E++ETLMGKYGEDSKLIYDL DQGGEL SLRYDLTVPFARY+AMN LT+ KR+ IAKVYR
Sbjct: 109 ELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYR 168
Query: 533 RDNP--SKGRYREFYQCDFDIA--------DFEVVKILTELLNELDIGDYEIKLNHRLLL 582
RDNP ++GRYREFYQCDFDIA D E +KI+ E+L+ L IGD+ +K+N R +L
Sbjct: 169 RDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRIL 228
Query: 583 DGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSP 642
DGM ICGV KFRTICSS+DKLDK S+E++K EMV EKGL+ E ADRIG +V++ G
Sbjct: 229 DGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGG- 287
Query: 643 LVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT--- 699
+ L+ +L Q+ L +N A L DL++LF+ L DK+ FDLSLARGLDYYT
Sbjct: 288 VSLVEQLLQDPKLS-QNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346
Query: 700 -----------------GVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQ 740
GVGS+AAGGRYD L+GMF K +VP VG+S+G+ER+F+I+EQ
Sbjct: 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
Query: 741 IQKERNQIIRATETQVLVG-----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLID 795
+ + IR TETQVLV LL ++L +LVSELW+A +KAE +++KK KL++
Sbjct: 407 RLEALEEKIRTTETQVLVASAQKKLLEERL----KLVSELWDAGIKAE-LLYKKNPKLLN 461
Query: 796 R---ARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846
+ E+ IP + I+GE+EL +G++KL+++ + +E + R + VEEI+RR Q
Sbjct: 462 QLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/455 (54%), Positives = 321/455 (70%), Gaps = 47/455 (10%)
Query: 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYD 491
K PKGTRD++ QMAVREK F +I FKRHGA +DTPVFE++ETLMGKYGEDSKLIYD
Sbjct: 15 KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD 74
Query: 492 LADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDF 549
L DQGGEL SLRYDLTVPFARY+AMN LT+ KR+ IAKVYRRDNP ++GRYREFYQCDF
Sbjct: 75 LKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDF 134
Query: 550 DIA--------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICS 601
DIA D E +KI+ E+L+ L IGD+ +K+N R +LDGM ICGV KFRTICS
Sbjct: 135 DIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICS 194
Query: 602 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSS 661
S+DKLDK S+E++K EMV EKGL+ E ADRIG +V++ G + L+ +L Q+ L +N
Sbjct: 195 SVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGG-VSLVEQLLQDPKLS-QNKQ 252
Query: 662 AKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT--------------------GV 701
A L DL++LF+ L DK+ FDLSLARGLDYYT GV
Sbjct: 253 ALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGV 312
Query: 702 GSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVG 759
GS+AAGGRYD L+GMF K +VP VG+S+G+ER+F+I+EQ + + IR TETQVLV
Sbjct: 313 GSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVA 372
Query: 760 -----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDR---ARESKIPWMVIVGER 811
LL ++L +LVSELW+A +KAE +++KK KL+++ E+ IP + I+GE+
Sbjct: 373 SAQKKLLEERL----KLVSELWDAGIKAE-LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQ 427
Query: 812 ELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846
EL +G++KL+++ + +E + R + VEEI+RR Q
Sbjct: 428 ELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 221/453 (48%), Gaps = 45/453 (9%)
Query: 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL- 492
P G +F + + I V++ +G ++TP E E L K + +IY L
Sbjct: 15 PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE 74
Query: 493 --------------ADQGGELCSLRYDLTVPFARYVA--MNGLT-SFKRHQIAKVYRRDN 535
D G E +L++D TVP A Y+A +N LT F R+Q V+R +
Sbjct: 75 PILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXDVVFRGER 134
Query: 536 PSKGRYREFYQCDFDIA---------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGML 586
GR+R+F QCD D+ D + I+TE+ ++IGD+ I++N+R +L G
Sbjct: 135 AKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNIGDFVIRINNRKVLTGFF 194
Query: 587 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646
+ + + ++ S ID L+K ++K E+ E++G++ E +I FVK GS +L
Sbjct: 195 QSLNISETQIKSCISIIDNLEKIGEAKVKLEL-EKEGINPEQTQKIIDFVKIDGSVDDVL 253
Query: 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDK-VVFDLSLARGLDYYTG----- 700
KL+ E+ L + +LE + + DK DL++ARGL+YYTG
Sbjct: 254 DKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYET 313
Query: 701 -------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATE 753
+GSI +GGRY+ L+G F ++ P VG+S+G+ R+ + + ++ + T
Sbjct: 314 TLIGHEALGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRL--LKAGILNTLPPTP 371
Query: 754 TQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGER 811
QV+V D+L P ++ +L A + K+ + K A + I + VI+G
Sbjct: 372 AQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD 431
Query: 812 ELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844
E LK++ + ++ ++ ++ EEI+RRL
Sbjct: 432 EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 195/440 (44%), Gaps = 50/440 (11%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLA 493
+G RDF E M R F + K G D PV E E + K GE+ ++ +++
Sbjct: 33 QGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFI 92
Query: 494 DQGGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
+GG +LR ++T AR + G L K + I + +R + ++GR RE YQ + D
Sbjct: 93 TKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMD 152
Query: 551 IADFEVVKILTEL------------LNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRT 598
I + V EL L+ D+G IK+N R +L ++E GV S+KF
Sbjct: 153 IVGVKSVSAEVELVCAACWAMRSLGLSSKDVG---IKVNSRKVLQTVVEQAGVTSDKFAP 209
Query: 599 ICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLE 658
+C +DK++K E+++ ++ GL D I T + L+ +
Sbjct: 210 VCVIVDKMEKIPREEVEAQLA-VLGLEPTVVDAITTTL-----------SLKSIDEIAQR 257
Query: 659 NSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----------GSIAAG 707
A+ +L F+ +E D V+FD S+ RGL YYTG+ ++ G
Sbjct: 258 VGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGG 317
Query: 708 GRYDNLIGMFGTK-QVPAVGVSLGIERVFTIMEQIQKER-NQIIRATETQVLVGLLGDKL 765
GRYDNL+ +G+ +P G G I+E +Q++R I V++
Sbjct: 318 GRYDNLLTTYGSPTPIPCAGFGFGD---CVIVELLQEKRLLPDIPHVVDDVVIPFDESMR 374
Query: 766 PLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI- 823
P A ++ L +A A+ ++ KKV++ + A V+V E G V++K +
Sbjct: 375 PHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLR 434
Query: 824 -DTTQEEVISRSNFVEEIQR 842
T +EE + F + R
Sbjct: 435 EGTGKEEGGAERGFAVPLDR 454
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 43/324 (13%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLA 493
+G RDF E M +R+ F + ++ G D+PV E E + K GE+ ++ +++
Sbjct: 33 QGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAGEEITEQMFNFI 92
Query: 494 DQGGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
+GG +LR ++T AR + G L K + I + +R + ++GR RE YQ + D
Sbjct: 93 TKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMD 152
Query: 551 IADFEVVKILTEL------------LNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRT 598
I + V EL L+ D+G +K+N R +L ++E GV ++KF
Sbjct: 153 IIGVKSVSSEVELVCAACTAMQSLGLSSKDVG---VKINSRKILQTVVEQAGVSADKFAP 209
Query: 599 ICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLE 658
+C +DK++K E++ ++ GL D I + + L + + E
Sbjct: 210 VCVIVDKMEKLPREEVVAQLA-AIGLESNVVDAITSTLS--------LKTIDEIAQRIGE 260
Query: 659 NSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----------GSIAAG 707
A L D +E D V+FD S+ RGL YYTG+ ++ G
Sbjct: 261 EHEAVRELRD---FITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALCGG 317
Query: 708 GRYDNLIGMFGTKQ-VPAVGVSLG 730
GRYDNL+ +G+ VP VG G
Sbjct: 318 GRYDNLLTTYGSPTAVPCVGFGFG 341
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 195/443 (44%), Gaps = 68/443 (15%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS-KLIYDLA 493
+G RDF E V + F E + G +D P E + K GE+ + Y
Sbjct: 10 RGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFV 69
Query: 494 DQGGELCSLRYDLTVPFARYVAMNGLTS-------FKRHQIAKVYRRDNPSKGRYREFYQ 546
D+GG +L +P A + +TS + + KV+R + P GRYRE YQ
Sbjct: 70 DKGGREVTL-----IPEATPSTVRXVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQ 124
Query: 547 CDFDI-------ADFEVVKILTELLNELDIGD-YEIKLNHRLLLDGMLEICGVPSEKFRT 598
+ DI AD EV+ + + +L+ L + D YEI++N R + + + I G S +
Sbjct: 125 FNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIXEEI--IGGXTSSDPFS 182
Query: 599 ICSSIDKLDKQSFE----QIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR--QE 652
+ S ID+ K S E Q++ + E G+S AD L S R E
Sbjct: 183 VFSIIDRYHKISREEFVDQLRSAGIGEDGVSX-IAD--------------LCSGTRGIDE 227
Query: 653 GSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV----------- 701
+ SS ++A + L S + V +D S+ RGL YYTG+
Sbjct: 228 XARITGKSSEEIAR---XAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQF 284
Query: 702 GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL--VG 759
+I GGRYDNL + + VPAVG G + V +++ +++E QI R ++ + VG
Sbjct: 285 RAILGGGRYDNLASLXSGESVPAVGFGXG-DAVISLL--LKRENVQIPREKKSVYICRVG 341
Query: 760 LLGDKL--PLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGI 817
+ + + +L N V+ + + + + A + VI GER+L G+
Sbjct: 342 KINSSIXNEYSRKLRERGXNVTVE---IXERGLSAQLKYASAIGADFAVIFGERDLERGV 398
Query: 818 VKLKNIDTTQEEVISRSNFVEEI 840
V ++N T +E + + VE +
Sbjct: 399 VTIRNXYTGSQENVGLDSVVEHL 421
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/441 (23%), Positives = 193/441 (43%), Gaps = 76/441 (17%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+GT+D +++ + ++ + +V + GA+ L TP+FE + G + ++ +
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRH----QIAKVYRRDNPSKGRYREFYQ 546
D+GG +LR + T R +G+ + + ++R + P KGRYR+F+Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 547 CDFD-------IADFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFR-- 597
+++ I D E V +L E L EL + ++KL+ G P ++ R
Sbjct: 127 VNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSS----------VGDPEDRARYN 176
Query: 598 TICSSIDKLDKQSFEQIKKEMVEEKGLSV--ETADRIGTFVKERG-SPLVLLSKLRQEGS 654
+ +++ + KE +EE + + ++R +KE G P+ L L +E
Sbjct: 177 AYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPM--LDFLGEEAR 234
Query: 655 LFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVG------------ 702
L+ + L+ L + ++ + +L RGLDYY
Sbjct: 235 AHLKE--VERHLERLSVPYE------------LEPALVRGLDYYVRTAFEVHHEEIGAQS 280
Query: 703 SIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ----IQKERNQ---IIRATETQ 755
++ GGRYD L + G +VP VG + G+ERV +E + +E+ +I TE
Sbjct: 281 ALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEA 340
Query: 756 VLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELN 814
V A ++E +++AEY + +K K ++ A + + +GE EL
Sbjct: 341 V----------AEAFYLAEALRPRLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELR 390
Query: 815 EGIVKLKNIDTTQEEVISRSN 835
G V LK + T ++ +SR
Sbjct: 391 AGEVTLKRLATGEQVRLSREE 411
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 49/350 (14%)
Query: 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLM-GKYGEDSK 487
R P + G DFAK + AV + S + + G + + +FE +TL+ + E S+
Sbjct: 25 RPPGMQDGYPDFAKRRRAVETRLLSFVEDA----GYEPVTSGLFEYVDTLLRARSPESSR 80
Query: 488 LIYDLADQGGELCSLRYDLTVPFARYVA---MNGLTSFKRHQIAKVYRR-DNPSK----- 538
L D GG+ +LR ++T AR A G T + +VYRR D+P+
Sbjct: 81 DWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWAS 140
Query: 539 GRYREFYQ---------CDFDIADFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEIC 589
G+ E Q D+ D +V+++L E + + I ++H L+ +L+
Sbjct: 141 GKAAESTQVGIERIGEEASVDV-DMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDAL 199
Query: 590 GVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKG------LSVETADRIGTFVKERGSPL 643
G+ + R + + + F ++ + + L+ A+R S
Sbjct: 200 GISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDR 259
Query: 644 VLLSKLRQEGSLFLENSSAKLALDDLEILF---QALEKSK-CIDKVVFDLSLARGLDYYT 699
L + LR ++ +A D L +AL S D V FDL+L R LDYYT
Sbjct: 260 ELEALLRDA----VDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYT 315
Query: 700 ---------GVGS-IAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME 739
GVG+ IA GGRYD L+ FG PAVG + +ERV ++E
Sbjct: 316 GLVFEMFAPGVGAPIAQGGRYDELLAQFGAG-APAVGFAFEVERVMAVLE 364
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 174/448 (38%), Gaps = 76/448 (16%)
Query: 424 SNESRRLPKLP--KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGK 481
+ + R+L KL KG D + + E + + + + +G + TP+ E
Sbjct: 23 TEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRG 82
Query: 482 YGEDSKLI----YDLADQ-GGELCSLRYDLTVPFARY-VAMNGLTSFKRH--QIAKVYRR 533
GE + ++ Y D GE +LR + T R + N L + I ++R
Sbjct: 83 IGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRH 142
Query: 534 DNPSKGRYREFYQCDFDI-------ADFEVVKILTELLNELDIGDYEIKLNHRLLLDGML 586
+ P +GRYR+F+Q + AD E+V + L +L + ++++N L +
Sbjct: 143 ERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAE--- 199
Query: 587 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646
E E + + DKLD + ++ +PL +L
Sbjct: 200 ERAAHRVELIKYLEQHADKLDDDAQRRLYT------------------------NPLRVL 235
Query: 647 SKLRQEGSLFLENSSAKLAL--DDLEILFQALEKSKCIDKVVFDLS--LARGLDYYT--- 699
+ N+ + D F+ L++ + V F ++ L RGLDYY
Sbjct: 236 DTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTV 295
Query: 700 ---------GVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR 750
G++AAGGRYD LI G K A G ++GIER+ ++ KE + +
Sbjct: 296 FEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIERILELL----KEEHLVPE 351
Query: 751 ATETQVLVGLLGDKLPLAAELVSE---------LWNAKVKAEYMVHKKVMKLIDRARESK 801
V V GD A +V+E + + K MK RA S
Sbjct: 352 QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMK---RADASG 408
Query: 802 IPWMVIVGERELNEGIVKLKNIDTTQEE 829
+ VI GE E+ G +K + T ++
Sbjct: 409 AAFAVIFGEDEVTNGTASVKPLRGTGDD 436
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 175/458 (38%), Gaps = 97/458 (21%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 8 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 67
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 68 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 127
Query: 548 DFDIADFEVVKILTELLN-----------------ELD-IGDYEIKLNHRLLLDGMLEIC 589
++ + I EL+ EL+ IG E + N+R L LE
Sbjct: 128 GCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLE-- 185
Query: 590 GVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 649
+KLD E K+ M +PL +L
Sbjct: 186 -----------QHKEKLD----EDCKRRMYT--------------------NPLRVLDSK 210
Query: 650 RQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-- 701
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 211 NPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNRTVF 268
Query: 702 ----------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ---- 747
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 269 EWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVV 328
Query: 748 ----IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIP 803
+ +TQ + LA L EL K+ + K RA +
Sbjct: 329 DIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKWGAR 381
Query: 804 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 382 VAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 419
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 175/458 (38%), Gaps = 97/458 (21%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 16 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 75
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 76 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 135
Query: 548 DFDIADFEVVKILTELLN-----------------ELD-IGDYEIKLNHRLLLDGMLEIC 589
++ + I EL+ EL+ IG E + N+R L LE
Sbjct: 136 GCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLE-- 193
Query: 590 GVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 649
+KLD E K+ M +PL +L
Sbjct: 194 -----------QHKEKLD----EDCKRRMYT--------------------NPLRVLDSK 218
Query: 650 RQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-- 701
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 219 NPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNRTVF 276
Query: 702 ----------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ---- 747
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 277 EWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVV 336
Query: 748 ----IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIP 803
+ +TQ + LA L EL K+ + K RA +
Sbjct: 337 DIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKWGAR 389
Query: 804 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 390 VAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 427
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 175/458 (38%), Gaps = 97/458 (21%)
Query: 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLI----Y 490
+G D+ + A+ ++ + V +G + P+ E GE + ++ Y
Sbjct: 9 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMY 68
Query: 491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQ---IAKVYRRDNPSKGRYREFYQC 547
D+ G+ +LR + T R +GL + + I ++R + P KGRYR+F+Q
Sbjct: 69 TFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQL 128
Query: 548 DFDIADFEVVKILTELLN-----------------ELD-IGDYEIKLNHRLLLDGMLEIC 589
++ + I EL+ EL+ IG E + N+R L LE
Sbjct: 129 GCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLE-- 186
Query: 590 GVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 649
+KLD E K+ M +PL +L
Sbjct: 187 -----------QHKEKLD----EDCKRRMYT--------------------NPLRVLDSK 211
Query: 650 RQEGSLFLENSSA------KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-- 701
E L ++ A + + + L + LE + V + L RGLDYY
Sbjct: 212 NPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTV--NQRLVRGLDYYNRTVF 269
Query: 702 ----------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQ---- 747
G++ AGGRYD L+ G + PAVG ++G+ER+ +++ + E
Sbjct: 270 EWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVV 329
Query: 748 ----IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIP 803
+ +TQ + LA L EL K+ + K RA +
Sbjct: 330 DIYLVASGADTQSAA------MALAERLRDELPGVKLMTNHG-GGNFKKQFARADKWGAR 382
Query: 804 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841
V++GE E+ G +K++ + ++ +++ + ++
Sbjct: 383 VAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLR 420
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 136/334 (40%), Gaps = 39/334 (11%)
Query: 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA 493
P G RD E ++ TE G ++TP E ET+ + ++ L
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSAILDQQLFKLL 72
Query: 494 DQGGELCSLRYDLTVPFARYVA---MNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
DQ G LR D T P AR VA + + + VYR G+ EF Q +
Sbjct: 73 DQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVE 132
Query: 551 I-------ADFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSI 603
+ AD EV+ + L + ++++ + H ++ +L V +E+
Sbjct: 133 LIGDGTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLXDV-VGNEQ------RA 185
Query: 604 DKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS 660
D+L + +E+ +E V+ LS R+ + RG + +E ++
Sbjct: 186 DRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAI-----EEARGLIQTE 240
Query: 661 SAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----GS-----IAAGGRY 710
K AL + L++ LE + V FDL+L YYTGV G+ + +GGRY
Sbjct: 241 KGKTALAEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEGYGNRLGVPLCSGGRY 300
Query: 711 DNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKE 744
D L+ F PA G+ R+ ++E + E
Sbjct: 301 DELLSKF---HRPAQATGFGV-RIDLLVEALNGE 330
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/448 (21%), Positives = 177/448 (39%), Gaps = 67/448 (14%)
Query: 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS----K 487
K+P+GT+D E + + E+ + + TP+FE + G+ + K
Sbjct: 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQK 62
Query: 488 LIYDLADQGGELCSLRYDLTVPFAR-YVAM----NGLTSFKRHQIAKVYRRDNPSKGRYR 542
+Y D+G +LR + T R Y+ N K + ++R + KGRYR
Sbjct: 63 EMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYR 122
Query: 543 EFYQCDFDI-------ADFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEK 595
+F Q + D EV+ ++ + + ++ +N + E +
Sbjct: 123 QFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKH 182
Query: 596 FRTI----CSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 651
F + CS +I V+ +++TA RI F+ E
Sbjct: 183 FEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNE------------- 229
Query: 652 EGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT------------ 699
E + E K LDDL I + D +L RGLDYYT
Sbjct: 230 ESKAYYE--QVKAYLDDLGIPYTE------------DPNLVRGLDYYTHTAFELMMDNPN 275
Query: 700 ---GVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQV 756
+ ++ GGRY+ L+ + +G +L IER+ +E+ E + +
Sbjct: 276 YDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDI---EENLDL 332
Query: 757 LVGLLGDKLP-LAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELN 814
+ +GD+ A +L++ L + +KA+ + +K+ + +A + +++G++EL
Sbjct: 333 FIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELE 392
Query: 815 EGIVKLKNIDTTQEEVISRSNFVEEIQR 842
+ +KN+ T + E I VE ++
Sbjct: 393 NNKIDVKNMTTGESETIELDALVEYFKK 420
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 35/276 (12%)
Query: 489 IYDLADQGGELCSLRYDLTVPFAR-YVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQC 547
++ G+ +LRYD T+P R Y + TS + K++R++ KGR E YQ
Sbjct: 84 MFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQI 143
Query: 548 DF-------DIADFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTIC 600
D ++ E++ + +++ +L + ++ + ++ +E +
Sbjct: 144 GIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTELL 203
Query: 601 SSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS 660
D +F + E +GL E F+ LS+L + N+
Sbjct: 204 LKKDLSGLNAFIEKNNFSKELRGLLKE------IFITNE------LSRLEN----LVTNT 247
Query: 661 SAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV----------GSIAAGGRY 710
+ + + L + EK I ++ DL + +DYYT + I +GGRY
Sbjct: 248 KDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGRY 307
Query: 711 DNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERN 746
D L+ F ++ A+G ++ + +E+ + E +
Sbjct: 308 DQLLSNF-QEEAFAIGFCCHMDTILKALERQELEED 342
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 794 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 837
I A+ KIP+ ++VG++E+ V ++ + +E + + F+
Sbjct: 589 IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFI 632
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 730 GIERVFTIMEQIQKERNQIIRATETQV 756
G+E VF IME +ERN +++ T++Q+
Sbjct: 1577 GVESVFDIMEMEDEERNALLQLTDSQI 1603
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 730 GIERVFTIMEQIQKERNQIIRATETQV 756
G+E VF IME +ERN +++ T++Q+
Sbjct: 1577 GVESVFDIMEMEDEERNALLQLTDSQI 1603
>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 130
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 556 VVKILTELLNELDIGDYEIKLNHR-----LLLDGMLEICGVPSEKF 596
+V+ LT ++ IG++EI +HR + L G L CGV S +F
Sbjct: 34 IVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRF 79
>pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 786 VHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 831
VH + +L + E + + V+V E L G+++L++ DTT +E++
Sbjct: 379 VHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMM 424
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 602 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 660
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 281 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 339
Query: 661 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 708
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 340 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 398
Query: 709 RYDNLIGMFGTKQV 722
D + + QV
Sbjct: 399 GLDAALTLRAAYQV 412
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 602 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 660
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 279 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 337
Query: 661 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 708
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 338 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 396
Query: 709 RYDNLIGMFGTKQV 722
D + + QV
Sbjct: 397 GLDAALTLRAAYQV 410
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 602 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 660
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 279 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 337
Query: 661 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 708
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 338 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 396
Query: 709 RYDNLIGMFGTKQV 722
D + + QV
Sbjct: 397 GLDAALTLRAAYQV 410
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 602 SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL-LSKLRQEGSLFLENS 660
+ID+L + E KE+VE +SV ++ T + E GS V+ +R+ GS+ S
Sbjct: 299 AIDRLARDDLESNSKEIVEH-AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGS 357
Query: 661 SAKLALDD-------LEILFQALEKSKCID----KVVFDLS-LARGLDYYTGVGSIAAGG 708
+ + LD LE LF A+ S + +F L RGL Y V ++A G
Sbjct: 358 TIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGL-YSGAVVMLSADG 416
Query: 709 RYDNLIGMFGTKQV 722
D + + QV
Sbjct: 417 GLDAALTLRAAYQV 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,895,568
Number of Sequences: 62578
Number of extensions: 869034
Number of successful extensions: 2604
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2525
Number of HSP's gapped (non-prelim): 38
length of query: 846
length of database: 14,973,337
effective HSP length: 107
effective length of query: 739
effective length of database: 8,277,491
effective search space: 6117065849
effective search space used: 6117065849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)