Query 003117
Match_columns 846
No_of_seqs 535 out of 2202
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02972 Histidyl-tRNA synthet 100.0 9E-110 2E-114 971.4 57.6 730 4-845 2-761 (763)
2 COG2986 HutH Histidine ammonia 100.0 2.7E-89 5.8E-94 746.1 29.2 328 22-384 51-470 (498)
3 KOG1936 Histidyl-tRNA syntheta 100.0 1.4E-84 3.1E-89 692.8 39.7 417 428-846 57-517 (518)
4 TIGR01225 hutH histidine ammon 100.0 1.3E-78 2.8E-83 689.8 29.2 329 22-385 48-469 (506)
5 TIGR03832 Tyr_2_3_mutase tyros 100.0 2.5E-77 5.4E-82 680.5 28.0 329 22-384 46-486 (507)
6 PRK09367 histidine ammonia-lya 100.0 1.4E-76 3E-81 674.4 28.3 309 22-343 51-451 (500)
7 COG0124 HisS Histidyl-tRNA syn 100.0 3.9E-74 8.4E-79 641.4 39.9 398 430-844 3-428 (429)
8 cd00332 PAL-HAL Phenylalanine 100.0 2.1E-75 4.6E-80 657.1 28.3 309 22-343 43-444 (444)
9 PF00221 Lyase_aromatic: Aroma 100.0 3.2E-74 6.8E-79 654.0 21.8 309 22-343 48-447 (473)
10 PLN02457 phenylalanine ammonia 100.0 1.8E-72 4E-77 650.7 34.6 307 23-343 97-516 (706)
11 TIGR01226 phe_am_lyase phenyla 100.0 6.8E-70 1.5E-74 628.6 26.4 310 22-345 81-503 (680)
12 PLN02530 histidine-tRNA ligase 100.0 6.8E-67 1.5E-71 603.9 42.9 391 431-836 70-486 (487)
13 PRK12420 histidyl-tRNA synthet 100.0 3.7E-66 8.1E-71 590.2 41.9 392 430-836 3-422 (423)
14 CHL00201 syh histidine-tRNA sy 100.0 2.1E-61 4.5E-66 551.0 40.4 381 431-844 4-418 (430)
15 KOG0222 Phenylalanine and hist 100.0 3.2E-62 6.8E-67 524.9 22.6 313 23-347 114-537 (715)
16 PRK12292 hisZ ATP phosphoribos 100.0 2.7E-60 5.9E-65 536.2 38.9 352 431-802 3-378 (391)
17 TIGR00442 hisS histidyl-tRNA s 100.0 2.1E-58 4.6E-63 523.3 39.4 367 432-826 1-397 (397)
18 PRK00037 hisS histidyl-tRNA sy 100.0 4.3E-57 9.2E-62 515.2 38.0 383 430-844 3-411 (412)
19 PRK12421 ATP phosphoribosyltra 100.0 1.7E-56 3.6E-61 503.9 37.9 357 431-811 7-384 (392)
20 TIGR00443 hisZ_biosyn_reg ATP 100.0 2.8E-52 6.1E-57 458.2 31.2 293 438-739 1-313 (314)
21 PF13393 tRNA-synt_His: Histid 100.0 5.1E-52 1.1E-56 456.2 26.2 290 436-734 1-311 (311)
22 PRK12295 hisZ ATP phosphoribos 100.0 2.5E-49 5.5E-54 441.5 31.4 285 447-737 6-370 (373)
23 cd00773 HisRS-like_core Class 100.0 1.3E-44 2.8E-49 387.9 25.5 236 445-738 2-260 (261)
24 PRK12293 hisZ ATP phosphoribos 100.0 3.3E-44 7.1E-49 386.5 27.2 261 431-739 5-280 (281)
25 COG3705 HisZ ATP phosphoribosy 100.0 4.7E-42 1E-46 376.6 25.6 359 430-811 2-381 (390)
26 TIGR00418 thrS threonyl-tRNA s 100.0 4.7E-41 1E-45 397.5 33.1 331 433-843 188-562 (563)
27 PRK00413 thrS threonyl-tRNA sy 100.0 7.4E-41 1.6E-45 401.4 26.0 352 431-845 256-633 (638)
28 KOG1035 eIF-2alpha kinase GCN2 100.0 2.2E-39 4.8E-44 383.2 31.1 447 369-845 843-1351(1351)
29 PRK12305 thrS threonyl-tRNA sy 100.0 2.8E-39 6E-44 383.1 31.5 350 432-846 193-571 (575)
30 PRK12444 threonyl-tRNA synthet 100.0 3.1E-38 6.6E-43 377.7 33.1 329 432-845 261-636 (639)
31 PRK14799 thrS threonyl-tRNA sy 100.0 5.3E-37 1.1E-41 355.5 30.3 384 391-845 120-532 (545)
32 PRK09194 prolyl-tRNA synthetas 100.0 4.3E-37 9.4E-42 362.1 29.9 404 427-841 29-561 (565)
33 TIGR00409 proS_fam_II prolyl-t 100.0 1.9E-35 4.2E-40 345.7 28.4 421 404-842 13-567 (568)
34 PRK12294 hisZ ATP phosphoribos 100.0 1.9E-34 4.1E-39 307.9 25.6 246 442-719 4-268 (272)
35 PLN02908 threonyl-tRNA synthet 100.0 1.2E-34 2.5E-39 347.7 25.8 388 389-845 272-683 (686)
36 PRK12325 prolyl-tRNA synthetas 100.0 4.1E-32 8.9E-37 310.6 27.4 366 427-841 29-438 (439)
37 TIGR00408 proS_fam_I prolyl-tR 100.0 2.4E-28 5.2E-33 281.4 26.1 332 409-845 10-382 (472)
38 PRK08661 prolyl-tRNA synthetas 100.0 2.3E-27 4.9E-32 273.9 28.2 319 431-845 30-388 (477)
39 PRK04173 glycyl-tRNA synthetas 100.0 9.2E-27 2E-31 266.7 29.6 315 432-843 25-455 (456)
40 PLN02837 threonine-tRNA ligase 100.0 9E-27 1.9E-31 276.3 26.8 348 433-846 235-610 (614)
41 PRK03991 threonyl-tRNA synthet 99.9 2.5E-25 5.4E-30 262.0 30.7 363 408-845 196-593 (613)
42 COG0441 ThrS Threonyl-tRNA syn 99.9 1.5E-25 3.2E-30 258.9 23.7 378 394-845 175-581 (589)
43 KOG2324 Prolyl-tRNA synthetase 99.9 3.6E-22 7.8E-27 210.6 16.8 352 427-841 34-427 (457)
44 COG0442 ProS Prolyl-tRNA synth 99.9 2.6E-22 5.6E-27 228.2 14.4 406 427-840 29-498 (500)
45 cd00779 ProRS_core_prok Prolyl 99.9 2E-22 4.3E-27 215.3 9.7 156 427-584 13-188 (255)
46 TIGR00389 glyS_dimeric glycyl- 99.9 8.7E-21 1.9E-25 218.4 21.9 372 434-843 26-550 (551)
47 KOG1637 Threonyl-tRNA syntheta 99.8 4.4E-20 9.5E-25 200.6 20.2 350 429-842 176-553 (560)
48 cd00771 ThrRS_core Threonyl-tR 99.8 6.6E-20 1.4E-24 200.3 15.3 148 431-580 16-183 (298)
49 PLN02734 glycyl-tRNA synthetas 99.8 3.3E-19 7.2E-24 208.0 18.2 120 722-845 528-662 (684)
50 PRK14894 glycyl-tRNA synthetas 99.8 3.9E-18 8.4E-23 191.1 23.2 94 752-845 433-538 (539)
51 COG0423 GRS1 Glycyl-tRNA synth 99.8 4.6E-18 1E-22 189.3 20.2 380 430-845 25-552 (558)
52 cd00772 ProRS_core Prolyl-tRNA 99.8 1.3E-18 2.8E-23 186.6 15.3 152 428-580 14-191 (264)
53 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 9.2E-19 2E-23 184.6 11.8 135 445-581 2-159 (235)
54 cd00778 ProRS_core_arch_euk Pr 99.7 1.2E-17 2.7E-22 179.0 10.4 154 409-570 4-182 (261)
55 cd00774 GlyRS-like_core Glycyl 99.7 1.3E-17 2.8E-22 178.3 9.8 133 431-571 18-169 (254)
56 PF00587 tRNA-synt_2b: tRNA sy 99.7 1.5E-16 3.3E-21 160.3 11.4 135 447-582 1-156 (173)
57 PRK04172 pheS phenylalanyl-tRN 99.5 1.9E-14 4.1E-19 167.4 10.5 137 438-574 225-408 (489)
58 TIGR02367 PylS pyrrolysyl-tRNA 99.5 5.4E-14 1.2E-18 156.5 12.7 127 444-575 238-376 (453)
59 PF12745 HGTP_anticodon2: Anti 99.5 2E-13 4.4E-18 146.1 12.0 97 749-845 1-107 (273)
60 cd00770 SerRS_core Seryl-tRNA 99.4 1.1E-12 2.3E-17 143.5 10.6 138 434-575 41-201 (297)
61 PF03129 HGTP_anticodon: Antic 99.4 3.7E-12 8E-17 115.0 10.3 88 755-842 1-93 (94)
62 PTZ00326 phenylalanyl-tRNA syn 99.4 5.5E-12 1.2E-16 143.7 13.8 150 444-593 227-460 (494)
63 cd00858 GlyRS_anticodon GlyRS 99.3 1.3E-11 2.8E-16 117.2 12.8 94 752-845 25-121 (121)
64 cd00861 ProRS_anticodon_short 99.3 1.7E-11 3.7E-16 110.5 10.7 88 753-840 1-93 (94)
65 PRK09537 pylS pyrolysyl-tRNA s 99.3 1.8E-11 3.8E-16 137.1 11.9 123 447-575 205-340 (417)
66 cd00860 ThrRS_anticodon ThrRS 99.3 4.9E-11 1.1E-15 106.6 11.5 88 753-840 1-90 (91)
67 cd00768 class_II_aaRS-like_cor 99.2 9E-11 2E-15 120.9 13.0 126 448-574 2-140 (211)
68 KOG2298 Glycyl-tRNA synthetase 99.2 8E-11 1.7E-15 129.2 12.7 121 724-844 459-592 (599)
69 cd00862 ProRS_anticodon_zinc P 99.2 1.8E-10 4E-15 119.0 12.6 94 752-845 9-111 (202)
70 PRK14938 Ser-tRNA(Thr) hydrola 99.2 2.3E-10 5.1E-15 125.7 13.5 116 728-843 246-366 (387)
71 cd02426 Pol_gamma_b_Cterm C-te 99.2 4E-10 8.7E-15 107.8 12.8 107 739-845 11-127 (128)
72 TIGR00414 serS seryl-tRNA synt 99.1 3.5E-10 7.6E-15 129.1 12.5 136 434-574 162-320 (418)
73 cd00738 HGTP_anticodon HGTP an 99.1 9.4E-10 2E-14 98.8 11.6 88 753-840 1-93 (94)
74 cd01594 Lyase_I_like Lyase cla 99.0 3.4E-09 7.4E-14 111.6 15.7 198 72-326 1-224 (231)
75 PRK05431 seryl-tRNA synthetase 99.0 9.9E-10 2.1E-14 125.7 12.1 138 433-575 158-319 (425)
76 cd00859 HisRS_anticodon HisRS 98.9 6.7E-09 1.5E-13 91.9 10.5 87 754-840 2-90 (91)
77 PRK09350 poxB regulator PoxA; 98.9 2.1E-09 4.5E-14 118.1 8.4 117 444-566 4-126 (306)
78 KOG4163 Prolyl-tRNA synthetase 98.8 1.4E-07 3.1E-12 103.0 17.2 324 431-844 84-448 (551)
79 PLN02678 seryl-tRNA synthetase 98.7 4.2E-08 9.1E-13 112.1 10.7 139 439-579 167-330 (448)
80 cd00669 Asp_Lys_Asn_RS_core As 98.7 4.4E-08 9.5E-13 105.6 10.0 110 446-566 2-117 (269)
81 PRK00960 seryl-tRNA synthetase 98.7 7E-08 1.5E-12 111.5 10.6 138 432-570 210-397 (517)
82 PLN02320 seryl-tRNA synthetase 98.5 3.4E-07 7.3E-12 105.3 10.5 142 435-580 221-388 (502)
83 TIGR00415 serS_MJ seryl-tRNA s 98.5 1.1E-06 2.5E-11 100.4 13.3 161 409-579 195-405 (520)
84 PF01409 tRNA-synt_2d: tRNA sy 98.3 3.3E-06 7.3E-11 89.8 10.6 124 447-570 18-157 (247)
85 cd00777 AspRS_core Asp tRNA sy 98.3 3.6E-06 7.9E-11 91.4 10.8 110 446-565 2-116 (280)
86 PRK00488 pheS phenylalanyl-tRN 98.2 1.7E-05 3.7E-10 87.3 15.0 121 442-567 104-236 (339)
87 cd00496 PheRS_alpha_core Pheny 98.2 1.9E-05 4.2E-10 82.8 13.5 116 449-568 4-132 (218)
88 COG0017 AsnS Aspartyl/asparagi 98.2 3.4E-05 7.5E-10 87.0 15.4 111 444-566 133-248 (435)
89 cd00776 AsxRS_core Asx tRNA sy 98.1 1.7E-05 3.8E-10 87.9 10.3 114 442-566 21-139 (322)
90 TIGR00468 pheS phenylalanyl-tR 98.0 2.9E-05 6.3E-10 85.0 11.8 122 444-570 70-204 (294)
91 TIGR00462 genX lysyl-tRNA synt 98.0 2.3E-05 5E-10 86.2 9.8 113 446-566 2-121 (304)
92 TIGR00459 aspS_bact aspartyl-t 97.9 5.4E-05 1.2E-09 89.5 11.6 112 443-564 136-252 (583)
93 PF00152 tRNA-synt_2: tRNA syn 97.8 0.00013 2.7E-09 81.6 11.9 114 444-566 21-142 (335)
94 PRK00476 aspS aspartyl-tRNA sy 97.8 0.00012 2.5E-09 87.3 11.3 113 442-564 138-255 (588)
95 cd00775 LysRS_core Lys_tRNA sy 97.8 0.0002 4.4E-09 79.7 12.2 113 445-566 8-124 (329)
96 PLN02853 Probable phenylalanyl 97.7 0.00027 5.7E-09 81.2 12.9 127 448-574 223-400 (492)
97 COG0016 PheS Phenylalanyl-tRNA 97.7 0.0003 6.5E-09 77.2 12.2 128 440-568 105-244 (335)
98 PLN02903 aminoacyl-tRNA ligase 97.7 0.0002 4.3E-09 85.2 11.3 102 442-552 200-303 (652)
99 PRK06462 asparagine synthetase 97.7 0.00021 4.5E-09 79.8 10.6 118 443-566 28-153 (335)
100 PRK12820 bifunctional aspartyl 97.7 0.00023 5E-09 85.5 11.5 114 442-564 153-270 (706)
101 PRK05159 aspC aspartyl-tRNA sy 97.6 0.00031 6.8E-09 81.2 11.6 115 442-566 133-252 (437)
102 PLN02850 aspartate-tRNA ligase 97.6 0.00025 5.5E-09 83.4 11.0 113 444-566 224-341 (530)
103 COG0173 AspS Aspartyl-tRNA syn 97.6 0.00026 5.7E-09 81.0 10.6 114 443-565 139-256 (585)
104 PRK00484 lysS lysyl-tRNA synth 97.6 0.00034 7.4E-09 81.8 11.9 115 443-566 170-288 (491)
105 TIGR00458 aspS_arch aspartyl-t 97.6 0.00037 8.1E-09 80.3 12.0 115 442-566 130-248 (428)
106 COG0172 SerS Seryl-tRNA synthe 97.6 0.00039 8.5E-09 78.7 11.6 137 435-576 164-323 (429)
107 PRK03932 asnC asparaginyl-tRNA 97.6 0.00032 6.9E-09 81.3 11.0 115 442-566 130-256 (450)
108 PRK12445 lysyl-tRNA synthetase 97.6 0.00033 7.1E-09 82.1 10.7 115 443-566 182-300 (505)
109 PLN02502 lysyl-tRNA synthetase 97.5 0.00049 1.1E-08 81.2 11.8 114 443-565 227-344 (553)
110 PTZ00385 lysyl-tRNA synthetase 97.5 0.00048 1E-08 82.0 11.5 116 443-567 231-350 (659)
111 PTZ00417 lysine-tRNA ligase; P 97.5 0.00045 9.8E-09 81.8 11.2 112 443-565 251-368 (585)
112 TIGR00499 lysS_bact lysyl-tRNA 97.5 0.0005 1.1E-08 80.5 11.0 114 443-565 170-287 (496)
113 COG2269 Truncated, possibly in 97.4 0.00061 1.3E-08 72.1 9.7 103 444-552 15-120 (322)
114 TIGR00457 asnS asparaginyl-tRN 97.4 0.0008 1.7E-08 78.1 10.3 113 444-566 135-259 (453)
115 PTZ00401 aspartyl-tRNA synthet 97.3 0.00079 1.7E-08 79.4 10.2 113 444-566 212-329 (550)
116 PTZ00425 asparagine-tRNA ligas 97.3 0.00095 2.1E-08 78.8 9.9 116 442-566 212-392 (586)
117 PRK02983 lysS lysyl-tRNA synth 97.2 0.0013 2.9E-08 83.5 10.5 114 444-566 769-886 (1094)
118 KOG2411 Aspartyl-tRNA syntheta 97.2 0.00092 2E-08 75.1 7.5 111 445-565 178-294 (628)
119 PLN02532 asparagine-tRNA synth 97.1 0.0023 5E-08 76.1 11.0 45 522-566 390-438 (633)
120 PLN02603 asparaginyl-tRNA synt 97.0 0.003 6.6E-08 74.7 10.8 116 444-565 225-369 (565)
121 PLN02221 asparaginyl-tRNA synt 97.0 0.0041 8.9E-08 73.6 11.4 45 522-566 327-375 (572)
122 KOG0554 Asparaginyl-tRNA synth 96.9 0.009 2E-07 66.0 12.5 106 440-552 127-237 (446)
123 KOG2509 Seryl-tRNA synthetase 96.9 0.0072 1.6E-07 67.6 11.5 139 433-574 171-334 (455)
124 KOG2784 Phenylalanyl-tRNA synt 96.9 0.00078 1.7E-08 73.0 3.5 125 449-573 215-390 (483)
125 TIGR00470 sepS O-phosphoseryl- 96.4 0.0077 1.7E-07 68.4 7.9 79 497-575 180-267 (533)
126 PRK09616 pheT phenylalanyl-tRN 96.2 0.028 6E-07 67.2 11.1 122 447-569 360-491 (552)
127 COG1190 LysU Lysyl-tRNA synthe 96.2 0.018 4E-07 65.9 9.0 99 445-552 180-279 (502)
128 PLN02788 phenylalanine-tRNA sy 95.9 0.075 1.6E-06 60.4 12.5 97 449-552 71-178 (402)
129 KOG1885 Lysyl-tRNA synthetase 95.5 0.015 3.2E-07 65.4 4.9 111 444-565 224-340 (560)
130 cd00769 PheRS_beta_core Phenyl 94.7 0.039 8.4E-07 56.9 4.8 85 449-534 3-91 (198)
131 KOG0556 Aspartyl-tRNA syntheta 94.7 0.074 1.6E-06 59.0 6.9 108 446-564 229-342 (533)
132 TIGR00471 pheT_arch phenylalan 92.2 0.75 1.6E-05 55.1 10.6 124 447-570 363-494 (551)
133 PRK07080 hypothetical protein; 91.7 1.7 3.7E-05 47.7 11.5 147 433-582 32-222 (317)
134 TIGR00469 pheS_mito phenylalan 90.6 1 2.2E-05 51.9 9.1 97 449-549 45-161 (460)
135 TIGR01225 hutH histidine ammon 89.9 0.2 4.4E-06 58.8 2.7 75 10-86 1-84 (506)
136 PF00221 Lyase_aromatic: Aroma 89.9 0.13 2.8E-06 60.1 1.1 75 10-86 1-84 (473)
137 PLN02265 probable phenylalanyl 88.4 1.6 3.5E-05 52.7 9.0 122 447-570 398-531 (597)
138 PRK09367 histidine ammonia-lya 88.2 0.39 8.4E-06 56.5 3.5 76 9-86 3-87 (500)
139 COG2024 Phenylalanyl-tRNA synt 84.8 0.44 9.4E-06 52.6 1.4 80 497-576 180-268 (536)
140 TIGR03832 Tyr_2_3_mutase tyros 83.5 0.69 1.5E-05 54.4 2.4 73 12-86 1-82 (507)
141 COG0442 ProS Prolyl-tRNA synth 77.0 4.7 0.0001 47.4 6.4 94 751-844 283-389 (500)
142 COG2986 HutH Histidine ammonia 76.0 1.1 2.5E-05 51.3 1.0 79 8-88 2-85 (498)
143 TIGR00472 pheT_bact phenylalan 74.2 4.4 9.5E-05 50.9 5.6 79 453-532 498-581 (798)
144 TIGR01226 phe_am_lyase phenyla 74.1 1.2 2.5E-05 54.0 0.5 60 7-68 30-95 (680)
145 PRK00629 pheT phenylalanyl-tRN 73.1 4.6 0.0001 50.6 5.4 84 448-533 489-576 (791)
146 cd00332 PAL-HAL Phenylalanine 73.0 2.3 4.9E-05 49.5 2.4 69 18-86 2-79 (444)
147 KOG0555 Asparaginyl-tRNA synth 72.2 8.8 0.00019 43.1 6.5 98 444-552 242-340 (545)
148 CHL00192 syfB phenylalanyl-tRN 71.0 6 0.00013 48.9 5.6 78 448-532 400-481 (704)
149 PLN02457 phenylalanine ammonia 67.7 3.9 8.5E-05 49.7 3.0 60 8-69 44-111 (706)
150 PRK06253 O-phosphoseryl-tRNA s 66.7 17 0.00036 42.9 7.6 81 495-575 179-268 (529)
151 COG0072 PheT Phenylalanyl-tRNA 59.3 13 0.00029 45.5 5.4 89 447-536 352-444 (650)
152 KOG0222 Phenylalanine and hist 43.7 9.1 0.0002 44.0 0.6 38 10-49 66-103 (715)
153 PRK13799 unknown domain/N-carb 40.5 6.8E+02 0.015 30.4 15.9 46 667-713 215-272 (591)
154 COG4038 Predicted membrane pro 37.9 17 0.00036 31.1 1.1 33 696-729 7-47 (87)
155 PF02780 Transketolase_C: Tran 31.1 77 0.0017 29.7 4.7 34 753-786 9-42 (124)
156 COG3705 HisZ ATP phosphoribosy 30.4 12 0.00027 42.5 -1.0 53 684-736 323-383 (390)
157 KOG2472 Phenylalanyl-tRNA synt 28.3 2.8E+02 0.0061 32.7 9.1 127 448-578 394-529 (578)
158 PLN02683 pyruvate dehydrogenas 26.2 1.7E+02 0.0037 33.2 7.0 57 754-812 229-290 (356)
159 TIGR00715 precor6x_red precorr 25.5 3.1E+02 0.0067 29.6 8.6 62 773-845 191-256 (256)
160 cd00669 Asp_Lys_Asn_RS_core As 25.4 44 0.00096 36.3 2.1 32 709-740 223-254 (269)
161 PRK02261 methylaspartate mutas 23.9 6.2E+02 0.014 24.4 9.6 17 764-780 67-83 (137)
162 PF04914 DltD_C: DltD C-termin 23.2 1.3E+02 0.0027 29.1 4.5 71 406-476 30-102 (130)
163 PF00731 AIRC: AIR carboxylase 22.3 4.3E+02 0.0093 26.2 8.1 54 755-808 2-62 (150)
164 cd00670 Gly_His_Pro_Ser_Thr_tR 22.2 1.6E+02 0.0035 30.5 5.6 36 703-738 190-234 (235)
165 cd00777 AspRS_core Asp tRNA sy 22.2 55 0.0012 35.8 2.1 20 721-740 246-265 (280)
166 PF00152 tRNA-synt_2: tRNA syn 20.7 55 0.0012 36.6 1.8 21 721-741 301-321 (335)
167 PRK13590 putative bifunctional 20.3 1.6E+03 0.034 27.3 14.4 44 669-713 217-272 (591)
168 CHL00144 odpB pyruvate dehydro 20.2 2.4E+02 0.0052 31.6 6.7 56 754-811 202-262 (327)
169 PF03853 YjeF_N: YjeF-related 20.1 2.5E+02 0.0055 28.0 6.2 91 752-842 24-129 (169)
No 1
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=9.1e-110 Score=971.35 Aligned_cols=730 Identities=68% Similarity=1.046 Sum_probs=644.4
Q ss_pred cccceEEEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHh
Q 003117 4 RGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKL 83 (846)
Q Consensus 4 ~~~~~~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h~g~g~~l~~~~vRa~m~~rln~l 83 (846)
++++++|||||||++||+..||+++||.++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 35 (763)
T PLN02972 2 AAESAVITLGGKGSSLTSASVYALATGVAQPRID---------------------------------------------- 35 (763)
T ss_pred CcccceEEecCCCccccHHHHHHHHhcccccccc----------------------------------------------
Confidence 5677889999999999999999999999988877
Q ss_pred cCCCCChhhHHHHHHHhhhcCCccccccccccCcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003117 84 LLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGA 163 (846)
Q Consensus 84 ~~G~SG~~~~~~~l~~~~~~g~~~~~~~p~~l~~keg~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g 163 (846)
++. ..|.+..|.++|+|||+.+|
T Consensus 36 -------------------------------------------~~~--------------~~~~~~~~~~~~~~~~~~~~ 58 (763)
T PLN02972 36 -------------------------------------------SSA--------------TCLARVVDAVAALSCEAAKA 58 (763)
T ss_pred -------------------------------------------cch--------------hHHHHHHHHHHhcccHhhhc
Confidence 111 45667889999999999999
Q ss_pred CcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCCCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcccCcccc
Q 003117 164 DVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGT 243 (846)
Q Consensus 164 ~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~~~~~~ 243 (846)
+.++||-..+++.-..+..++||..|+.||.||++++..++-+|-.+|.|||-.|++++.++.++.+||||.+..|+-.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (763)
T PLN02972 59 DVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKAQAEVFSKIPKINGIFREAVKAVHAVVRIELNSPVKLGKRDA 138 (763)
T ss_pred chhhccCCCCCCCcccccccchhccceeeecccchhhhhHHHHHhcCcccchHHHHHHHHHHHHHHHHhcCcccccccCc
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999988755221
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCcccccCCCCCCcccc-ccccccCCCcccccccchHHHHHHH
Q 003117 244 AKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRK-TYKLVLDANFEEDYVKFLHEANVLL 322 (846)
Q Consensus 244 ~~~~~~~~d~l~~a~~~l~~~serR~~~l~~~~~~~gLp~fL~~~~~~~~~~~~-~ds~~~s~~~qedhvsm~~~~~~~~ 322 (846)
+.. ...|+.|+..||.+|..|..++++.+.+..|...|+.+ -..++++. +++... .||.||+.+..+..|
T Consensus 139 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 209 (763)
T PLN02972 139 IQT----GEGLARAVQALGKLSVARAKLCLEVIGDEELRKKLTSG-VVLDNLYGLLLKVSI----EEDAVSFLHGVNNLL 209 (763)
T ss_pred chh----hHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhcc-eeehhhhhhhhheee----cchHHHHHHHHHHHH
Confidence 111 11267899999999999999999988888899999988 44555555 556655 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCCCcc---ccchhhhhhhhchhcCchhHHHHHHHHHHhcc--CCcch-HH--
Q 003117 323 GMVWKIVTWEAVLAFVALEGGELLGEKVNGGDV---VVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQS--KSLGI-LE-- 394 (846)
Q Consensus 323 ~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-- 394 (846)
..+|+|+|||..+|+.+|+..|+..++++..++ +.+|++||+|||+++|+++..+..+....... |.... |.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (763)
T PLN02972 210 GIVWDIVAWEAAAAFAVLEGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVLQLIKDRVTNGGGVSSDSLQVL 289 (763)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhhhhccccchhhhhhhhhccccccchhhhhhhhcccccccccchhHHHHH
Confidence 999999999999999999999999877655543 34668888999999999999999988866553 22333 32
Q ss_pred -HHHHHhhhccCCCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccc
Q 003117 395 -KWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFE 473 (846)
Q Consensus 395 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le 473 (846)
.+...+..++.|..|...+...++.++...++..+.+++|+||+||+|.++..+++++++++++|++|||.+|+||+||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE 369 (763)
T PLN02972 290 AEWATQLLLLFDPKCPGFDSLVDKVKEIVESNEVRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFE 369 (763)
T ss_pred HhhccchhhcccccccchhHHHHHHHHhhcccchhcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCccc
Confidence 2332455678888888888888777665554557888999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc-
Q 003117 474 MRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA- 552 (846)
Q Consensus 474 ~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~- 552 (846)
++|+|..++|++.++||+|.|++|+.++||||+|+|+||+++++...|+|+||+|+|||+|+|+.||+|||+|||||||
T Consensus 370 ~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG 449 (763)
T PLN02972 370 LRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAG 449 (763)
T ss_pred chHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEc
Confidence 9999988888877889999999999999999999999999999877799999999999999999999999999999998
Q ss_pred -------cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCC
Q 003117 553 -------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLS 625 (846)
Q Consensus 553 -------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~ 625 (846)
|+|||.++.++|+.||+++|.|+|||+++++++++.|+++++.++.++..++++++..|++++++|.+..|++
T Consensus 450 ~~~~~~aDAEVI~La~E~L~~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs 529 (763)
T PLN02972 450 VYEPMGPDFEIIKVLTELLDELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLS 529 (763)
T ss_pred CCCcchhhHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-----
Q 003117 626 VETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----- 700 (846)
Q Consensus 626 ~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----- 700 (846)
++.++.|.+|+.++|++.+++++++.....+..+....+++++|+.++++++.+|+..+|.|||+++||++||||
T Consensus 530 ~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~ 609 (763)
T PLN02972 530 NETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEA 609 (763)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEE
Confidence 999999999999999988899988754334555666788999999999999999998889999999999999999
Q ss_pred ------CCcccCCCccchhhhhhCCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHH
Q 003117 701 ------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVS 773 (846)
Q Consensus 701 ------~g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~ 773 (846)
.++|++|||||+|++.|+++++|||||+|++|||+.++.+.+......|.+.++||+|++.++ .+.+++++++
T Consensus 610 ~~~g~~~gsIagGGRYD~Lv~~FgG~~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~ 689 (763)
T PLN02972 610 VFKGAQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAELVS 689 (763)
T ss_pred EEcCCccceeeecCCchhHHHhcCCCCCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHH
Confidence 158999999999999998889999999999999999987654321112445678999999886 6789999999
Q ss_pred HHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 774 ELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 774 ~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+||++||+|++.+..++++++++|++.|++|+||+|++|+++++|+|||+.+++|.+|++++|+++|++.|.
T Consensus 690 ~LR~aGI~aE~~~~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 690 ELWNAGIKAEYKVSTRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred HHHHCCCEEEEeCCCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 999999999987777899999999999999999999999999999999999999999999999999998774
No 2
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-89 Score=746.07 Aligned_cols=328 Identities=23% Similarity=0.234 Sum_probs=292.2
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCChh-hHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~~ 96 (846)
++||||||| +|+++|++++++.||+|++ +|| ||||+|||.++|||||++|+|+|++||||++ ++++.
T Consensus 51 ~~vYGInTGfG~l~~v~I~~~d~~~Lqrnli--------~SHa~GvG~~l~~~~vRaim~~r~nsLa~G~SGvr~~vi~~ 122 (498)
T COG2986 51 APVYGINTGFGKLADVRIAAADLATLQRNLI--------LSHACGVGEPLPEEIVRAIMALRLNSLARGYSGVRLEVIEL 122 (498)
T ss_pred CeeeeeccccccccccccCHHHHHHHHHhhH--------HHhhccCCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 368999999 7999999999999999999 999 9999999999999999999999999999954 68888
Q ss_pred HHHhhh---------cCCccc--------cc----------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLN---------SQTETL--------QF----------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~---------~g~~~~--------~~----------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|..++| +||||+ |+ +|++|++|||++|.| + |++
T Consensus 123 LlalLN~gv~P~iP~~GSVGASGDLapLaHmal~liGeG~a~~~G~~~~a~~AL~~aglePi~L~aKEGLALiN-G-Tq~ 200 (498)
T COG2986 123 LLALLNKGVIPVIPSKGSVGASGDLAPLAHMALALIGEGEAFYQGERLSAAEALAKAGLEPVTLAAKEGLALIN-G-TQV 200 (498)
T ss_pred HHHHHhCCCeecCCCCCCCcccccccHHHHHHHHHhcCceeeeCCEeccHHHHHHHcCCCCcccccccceeecc-c-cHH
Confidence 776555 555551 22 699999999944444 3 458
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCCC------Ccc
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKM------KSE 205 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~~------D~y 205 (846)
|||+++++++||++|++||++++|||+|+++|+.+||||++ |.+|||+||+++|++||.+|+||++|++| |||
T Consensus 201 ~tg~a~lal~~Ae~L~~~A~~~~ALs~Eal~g~~~~fd~~i-~~~Rp~~Gq~~~a~~lR~lLagS~~~~~~~~~rvQDpy 279 (498)
T COG2986 201 STALALLALFRAERLLRTALIAGALSTEALMGSDAPFDERI-HALRPHPGQIDVAAALRALLAGSAIRRSHLEQRVQDPY 279 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCccccchHH-HHhCCCccHHHHHHHHHHHhccCcchhccccccccCcc
Confidence 99999999999999999999999999999999999999998 59999999999999999999999999876 999
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----cC---ccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003117 206 DILEIPKINGKLREVVKSVHSSTRVELNSSVK----VG---ISGTAKAV-----GANALALAAAIHNLGESSLYRAKMNL 273 (846)
Q Consensus 206 slRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~~---~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l~ 273 (846)
||||+|||||+++|+++|+++++++|+||+|| |+ ++.||||| ++++|+|++|++|+|++|||||++||
T Consensus 280 SlRc~PQV~GA~~d~l~~~~~~le~ElNsvtDNPlv~~~~~~ViSgGNFhg~pva~A~D~L~iAlae~a~iseRRi~~Lv 359 (498)
T COG2986 280 SLRCQPQVHGACLDALRQAARVLEIELNSVTDNPLVFGDEEEVISGGNFHGEPVALAADFLAIALAELAAISERRIARLV 359 (498)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcccCCCCccccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 33 38889999 55579999999999999999999999
Q ss_pred CCCCCCCCCcccccC-----------------CCCCCcccc---ccccccCCCcccccccchHHHHHH----HHHHHHHH
Q 003117 274 NSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKIV 329 (846)
Q Consensus 274 ~~~~~~gLp~fL~~~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~il 329 (846)
||.+| |||+||+++ +++|+.+++ +||+|||+| ||||||||+.++++ ++|+++|+
T Consensus 360 np~~s-gLP~FL~~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ptSan-qEDhvSm~~~aa~k~~~iien~~~Il 437 (498)
T COG2986 360 NPALS-GLPAFLVPKPGLNSGFMIAQYTAAALVSENKVLAHPASVDSIPTSAN-QEDHVSMATHAARKLLEIIENLRTIL 437 (498)
T ss_pred Cchhc-cCCccccCCCCcccchHHHHHHHHHHHHHHHhhcCCcccCCccccCc-ccchhcchHHHHHHHHHHHHHHHHHH
Confidence 99998 999999985 456666777 999999999 99999999986665 58899999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHH
Q 003117 330 TWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (846)
Q Consensus 330 aiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (846)
|||+||||||+||+. +..++.+|.-+...+.+.
T Consensus 438 aiE~l~AaQa~dlr~----------------------~~~~s~~t~~~~~~vR~~ 470 (498)
T COG2986 438 AIELLAAAQAVDLRA----------------------PLDLSPGTKAAYAAVREK 470 (498)
T ss_pred HHHHHHHHhHhhhcc----------------------ccccChHHHHHHHHHHhh
Confidence 999999999999991 111677777777776654
No 3
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-84 Score=692.85 Aligned_cols=417 Identities=61% Similarity=0.964 Sum_probs=394.2
Q ss_pred ccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCCh
Q 003117 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT 507 (846)
++.+++|+||+||.|+++.+|+++++++.++|++||++.|+||+||-.+++.++||++++.+|.|.|++|+.++||||+|
T Consensus 57 k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLT 136 (518)
T KOG1936|consen 57 KFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLT 136 (518)
T ss_pred ceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEeeceeecCCC--CCCCccceEecccccc--------cHHHHHHHHHHHHHcCCCceEEEEc
Q 003117 508 VPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIA--------DFEVVKILTELLNELDIGDYEIKLN 577 (846)
Q Consensus 508 ~~iaR~~a~~~~~plK~y~ig~VfR~e~p--~~Gr~REf~Q~g~ei~--------DaEvI~l~~eil~~lgl~~~~i~In 577 (846)
+|||||+|+|+...+|+|+|++|||+++| -.||+||||||||||+ |+||+++++|+|+.|++++|.|++|
T Consensus 137 VPfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~iKvN 216 (518)
T KOG1936|consen 137 VPFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGIKVN 216 (518)
T ss_pred cHHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEEEec
Confidence 99999999999999999999999999999 5899999999999997 9999999999999999999999999
Q ss_pred chhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccccc
Q 003117 578 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 657 (846)
Q Consensus 578 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~ 657 (846)
|+.|++++++.||+|++.++.+|+.+||++|.+|+++++|+..++|++++.+++|.+++.+.|.. ++++++.++ +.+.
T Consensus 217 hRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~-eL~e~l~~d-~~l~ 294 (518)
T KOG1936|consen 217 HRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLD-ELLEKLIAD-PKLS 294 (518)
T ss_pred HHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHH-HHHHHHhcC-Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999984 888988865 5678
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-----------------------------CCcccCCC
Q 003117 658 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------------------------VGSIAAGG 708 (846)
Q Consensus 658 ~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-----------------------------~g~ia~GG 708 (846)
+|+.+.+++++|+.+++|++.+|+..+|+||+|++||+||||| .|++|+||
T Consensus 295 ~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGG 374 (518)
T KOG1936|consen 295 QNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGG 374 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCc
Confidence 8888999999999999999999999999999999999999999 16899999
Q ss_pred ccchhhhhhCCC--CccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEE
Q 003117 709 RYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYM 785 (846)
Q Consensus 709 RYD~Li~~fg~~--~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~ 785 (846)
|||+|+.+|+++ .+|+||+|+|+|||+.+|.+.........+++.++|+|...+. ...+++++++.||.+||.+|+.
T Consensus 375 RYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~ 454 (518)
T KOG1936|consen 375 RYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYL 454 (518)
T ss_pred chhhHHHHhccccCcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhh
Confidence 999999999864 6899999999999999998865443334567789999999987 7899999999999999999999
Q ss_pred cC--CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhhC
Q 003117 786 VH--KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846 (846)
Q Consensus 786 ~~--~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 846 (846)
+. .++.+|++||++.||||+||+|++|+++|.|+||++.+++++.+++++++..|++.+.|
T Consensus 455 yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 455 YKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLSQ 517 (518)
T ss_pred hhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhcC
Confidence 84 56889999999999999999999999999999999999999999999999999998876
No 4
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=1.3e-78 Score=689.76 Aligned_cols=329 Identities=24% Similarity=0.262 Sum_probs=290.7
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|++++.+++|+|++ +|| ||+|++||+++|||||++|+|+|++|+|| +|++++.
T Consensus 48 ~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi--------~sha~GvG~~l~~~~vRa~m~~Rlnsl~~G~SGvr~~vv~~ 119 (506)
T TIGR01225 48 ETVYGINTGFGKLASTRIDSEDLAELQRNLV--------RSHAAGVGDPLDEEVVRAIMALRLNSLAKGYSGVRAEVLDQ 119 (506)
T ss_pred CceeeecCCCCCccCcccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 479999999 7999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCccccc---------------------------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLNSQTETLQF---------------------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~~g~~~~~~---------------------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|.+++|+|++|.++ +|++|++|||++|.| + |++
T Consensus 120 L~~~LN~gi~P~VP~~GSvGaSGDL~pLAhial~LiGeg~v~~~G~~~~a~eaL~~~gl~P~~l~~KEgLALiN-G-t~~ 197 (506)
T TIGR01225 120 LIALLNAGVHPVVPEKGSVGASGDLAPLAHMALVLMGEGKAFFKGERMPAAEALAAAGLEPVTLAAKEGLALIN-G-TQA 197 (506)
T ss_pred HHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCceEECCEeecHHHHHHHcCCCCCCCCCcchhHHhh-h-hHH
Confidence 88877777666322 599999999954444 4 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC-------CCc
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-------MKS 204 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~-------~D~ 204 (846)
|+|+++++++++++|+++|++++|||+|+|+|+++||||++ |++||||||+++|++||.+|+||+++.. |||
T Consensus 198 ~~a~aalal~~a~~L~~~a~~~~Als~Eal~g~~~~f~~~i-~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~vQD~ 276 (506)
T TIGR01225 198 MTALALLALFDAEDLLRAADITAALSVEALLGTTKPFDPDI-HEARPHRGQIDVAARFRELLAGSEITLSHRDCDRVQDA 276 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhCHHH-HHhCCChhHHHHHHHHHHHhCCCccchhcccCCCCCCc
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999743 599
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHh
Q 003117 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALAAAIHNLGESSLYRAKMN 272 (846)
Q Consensus 205 yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l 272 (846)
|||||+||||||++|+++++++++++||||+||. +++.+|||| +.++|+|++|++++|++||||+++|
T Consensus 277 ySlRc~PQv~Ga~~d~l~~~~~~ve~ElNS~tDNPli~~~~~~v~~gGNFhg~~vala~D~l~iAla~la~~serr~~~L 356 (506)
T TIGR01225 277 YSLRCQPQVHGAVLDTLDQVAEVLGIELNSATDNPLVFADGGEVVSGGNFHGEPVALAADFLAIAIAELGSISERRIERL 356 (506)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999992 237789999 4457999999999999999999999
Q ss_pred cCCCCCCCCCcccccC-----------------CCCCCcccc---ccccccCCCcccccccchHHHHHH----HHHHHHH
Q 003117 273 LNSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKI 328 (846)
Q Consensus 273 ~~~~~~~gLp~fL~~~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~i 328 (846)
+||.+| |||+||+++ +++++.+++ +||+|||+| ||||||||+.++++ ++|+++|
T Consensus 357 ~~p~~s-gLP~fL~~~~g~~sGf~~~q~taaal~aE~r~La~PaS~~s~pts~~-~ED~vSmg~~aar~~~~~v~~~~~i 434 (506)
T TIGR01225 357 LDPNLS-GLPPFLAPDGGLNSGFMIAQYTAAALVSENKALSHPASVDSIPTSAN-QEDHVSMGAHAARKLREMIENVRRV 434 (506)
T ss_pred cCcccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCcccccCC-cccccccHHHHHHHHHHHHHHHHHH
Confidence 999998 999999975 244444665 799999999 99999999986555 6889999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHHh
Q 003117 329 VTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRL 385 (846)
Q Consensus 329 laiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (846)
+|||+++||||+|++. ...+|.++.-+...+.+.+
T Consensus 435 lAiEll~a~QAldlr~----------------------~~~~~~~~~~~~~~vR~~v 469 (506)
T TIGR01225 435 IAIELLAACQGLEFRD----------------------PLKTSAKLEKAYQAVRSVV 469 (506)
T ss_pred HHHHHHHHHHHHHhhc----------------------ccCCCHHHHHHHHHHHHhC
Confidence 9999999999999981 0113677777776666553
No 5
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=2.5e-77 Score=680.52 Aligned_cols=329 Identities=20% Similarity=0.202 Sum_probs=290.2
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|++++.+++|+|++ +|| ||+|+|+|+++|||||++|+|+|++|||| .|++++.
T Consensus 46 ~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~iRln~l~~G~SGvr~~vve~ 117 (507)
T TIGR03832 46 VPIYGVTTGYGEMIYMLVDKEHEVELQTNLV--------RSHSAGVGPLFAEDEARAIVAARLNALAKGHSAVRPEILER 117 (507)
T ss_pred CceeeecCCCCCccCccCCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 479999999 7999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCccccc---------------------------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLNSQTETLQF---------------------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~~g~~~~~~---------------------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|.+++|+|++|.++ +|++|.+|||++|.| + |++
T Consensus 118 L~~~LN~gi~PvVP~~GSvGaSGDL~pLAhial~L~Geg~v~~~G~~~~a~eaL~~~gl~Pl~L~~KEgLALiN-G-t~~ 195 (507)
T TIGR03832 118 LALYLNLGITPAIPEIGSLGASGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLRERGIEPLELRFKEGLALIN-G-TSA 195 (507)
T ss_pred HHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCceeECCEeecHHHHHHHcCCCCcCCCCcchhhhhc-c-hHH
Confidence 88877777666322 599999999955544 4 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccC-CCCChhHHHHHHHHHHHhcCCCCCC----------
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGD-GFTAKEEIGVAGDLKVLLNGSKLVG---------- 200 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~-~rph~gq~~~A~~~r~lL~gS~~~~---------- 200 (846)
|+|+++++++++++|+++|++++|||+|+|+|+.+||||++| + +||||||+++|++||.+|+||+++.
T Consensus 196 ~~a~aala~~~a~~Ll~~a~~~~Als~Eal~g~~~~f~~~~~-~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~ 274 (507)
T TIGR03832 196 MTGLGALVVGRALEQVQQAEIVTALVIEALRGSTGPFLAEGH-DIARPHPGQIDSAANMRALMRGSGLTVEHADLRREVQ 274 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhcCHHHH-hhcCCCchHHHHHHHHHHHhccCccchhchhhhcccc
Confidence 999999999999999999999999999999999999999984 6 7999999999999999999999863
Q ss_pred ---------------CCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc------Cccccccch-----HHHHHHH
Q 003117 201 ---------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV------GISGTAKAV-----GANALAL 254 (846)
Q Consensus 201 ---------------~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~------~~~~~~~~~-----~~~~d~l 254 (846)
-||||||||+|||||+++|+|++++++|++||||++|. +++.+|||| +.++|+|
T Consensus 275 ~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~le~ElNs~~DNPli~~~~~v~sgGNFhg~~va~a~D~L 354 (507)
T TIGR03832 275 ERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAVRDTLYHARTKLEIELNSANDNPLFFEGREIFHGANFHGQPVAFAMDFV 354 (507)
T ss_pred ccccccccccccCCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccCCCccccCCCccchhHHHHHHHH
Confidence 35999999999999999999999999999999999992 347789998 4557999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCCCCCCCcccc-cC-----------------CCCCCcccc---ccccccCCCccccccc
Q 003117 255 AAAIHNLGESSLYRAKMNLNSINSDGLRSLFE-KD-----------------CSSGDNLRK---TYKLVLDANFEEDYVK 313 (846)
Q Consensus 255 ~~a~~~l~~~serR~~~l~~~~~~~gLp~fL~-~~-----------------~~~~~~~~~---~ds~~~s~~~qedhvs 313 (846)
++|++++|++||||+++|+||.+|+|||+||+ ++ +++++.+ + +||+|||++ ||||||
T Consensus 355 ~iAla~la~~serR~~~L~~p~~s~gLP~fL~~~~~g~~sGfm~~Q~~aaaL~aE~r~L-~PaS~~s~pts~~-~ED~vS 432 (507)
T TIGR03832 355 TIALTQLGVLSERRLNRLLNRHLSYGLPEFLVAGDPGLHSGFAGAQYPATALVAENRTI-GPASTQSVPSNGD-NQDVVS 432 (507)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccCCChhhCCCCCCCCccchHHHHHHHHHHHHHHHh-CCCccCCccccCC-cccccc
Confidence 99999999999999999999999889999997 33 3455557 6 899999999 999999
Q ss_pred chHHHHHH----HHHHHHHHHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHH
Q 003117 314 FLHEANVL----LGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (846)
Q Consensus 314 m~~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (846)
||+.++++ ++|+++|+|||+++|+||+|++.. ...+|.++.-+...+.+.
T Consensus 433 mg~~aark~~~~v~~~~~ilAiEll~aaQAldlr~~---------------------~~~~~~~~~~~~~~vr~~ 486 (507)
T TIGR03832 433 MGLIAARNARRVLSNNNKILAVELLAAAQAVDLAGR---------------------FDGLSPAARATYEAVRRL 486 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------cccCCHHHHHHHHHHHHh
Confidence 99986555 588999999999999999999810 112677777666666554
No 6
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=1.4e-76 Score=674.44 Aligned_cols=309 Identities=23% Similarity=0.233 Sum_probs=279.4
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|++++.+++|+|++ +|| ||+|++||+++|||||++|||+|++|+|| .|++++.
T Consensus 51 ~~iYGvnTG~G~~~~~~i~~~~~~~lq~nLi--------~sha~GvG~~l~~~~vRa~m~~Rln~l~~G~SGV~~ev~~~ 122 (500)
T PRK09367 51 RPVYGINTGFGKLASVRIAPEDLEQLQRNLV--------LSHAAGVGEPLPEEVVRLMMLLRLNSLARGHSGVRPEVIEA 122 (500)
T ss_pred CcccccccCCccccCcccCHHHHHHHHHHHH--------HHHHcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 478999999 7899999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCccccc---------------------------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLNSQTETLQF---------------------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~~g~~~~~~---------------------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|.+++|+|++|.++ +|+.|++|||++|.| + |++
T Consensus 123 L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~L~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~KegLALin-G-t~~ 200 (500)
T PRK09367 123 LLALLNAGVTPVIPEKGSVGASGDLAPLAHMALVLLGEGEAFYKGERLPAAEALAKAGLEPVTLAAKEGLALIN-G-TQA 200 (500)
T ss_pred HHHHHhCCCcccCCCCCCccccccHHHHHHHHHHHhCCCceeeCCEeecHHHHHHHcCCCCcCCCCcchhHHhc-c-HHH
Confidence 88877777666322 599999999954444 4 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC-------CCc
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK-------MKS 204 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~-------~D~ 204 (846)
|+|+++++++++++|+++|++++|||+|+++|+.+||||++ |++||||||+++|++||++|+||+++.. |||
T Consensus 201 ~~a~~al~l~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~-~~~Rph~Gq~~~A~~lr~lL~gS~l~~~~~~~~~vQD~ 279 (500)
T PRK09367 201 STALALLGLFDAEDLLAAADVAGALSVEALLGSDAPFDARI-HALRGHPGQIDVAANLRALLEGSSIITSSHDCERVQDP 279 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhCHHH-HHhCCChhHHHHHHHHHHHHcCCcccccccCCCcCCcc
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999753 599
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc------Cccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003117 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV------GISGTAKAV-----GANALALAAAIHNLGESSLYRAKMNL 273 (846)
Q Consensus 205 yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~------~~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l~ 273 (846)
|||||+||||||++|++++++++|++||||++|. +++.+|||| +.++|+|++|++++|++||||+++|+
T Consensus 280 ySlRc~PQv~Ga~~d~l~~~~~~v~~ElNS~~DNPlv~~~~~v~~gGNF~g~~lala~D~L~iAla~la~~serR~~~L~ 359 (500)
T PRK09367 280 YSLRCQPQVHGACLDQLRYAAEVLEIEANAVTDNPLVFPDGDVISGGNFHGEPVAFAADFLAIAVAEIGSISERRIARLV 359 (500)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccCCCCeeeCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999992 347789998 55579999999999999999999999
Q ss_pred CCCCCCCCCcccccC-----------------CCCCCcccc---ccccccCCCcccccccchHHHHHH----HHHHHHHH
Q 003117 274 NSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKIV 329 (846)
Q Consensus 274 ~~~~~~gLp~fL~~~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~il 329 (846)
||.+| |||+||+++ +++++++++ +||+|||++ ||||||||+.++++ ++|+++|+
T Consensus 360 ~p~~s-gLp~fL~~~~g~~~G~~~~q~taaal~ae~r~la~PaS~~s~pts~~-~ED~~Smg~~aark~~~~~~~~~~il 437 (500)
T PRK09367 360 DPALS-GLPPFLVPDPGLNSGFMIAQVTAAALVSENKTLAHPASVDSIPTSAN-QEDHVSMGTHAARKLREMAENLRRVL 437 (500)
T ss_pred Ccccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCcCccCc-chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998 999999975 234444555 799999999 99999999985555 58899999
Q ss_pred HHHHHHHHHhhhcc
Q 003117 330 TWEAVLAFVALEGG 343 (846)
Q Consensus 330 aiEl~~a~qa~~~~ 343 (846)
|||+++|+||+|++
T Consensus 438 Aiell~a~QA~dlr 451 (500)
T PRK09367 438 AIELLAAAQGLDFR 451 (500)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999998
No 7
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-74 Score=641.44 Aligned_cols=398 Identities=36% Similarity=0.552 Sum_probs=348.7
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpD 505 (846)
..+.|+||+||+|.++..|++++++++++|++|||.+|.||+||+.++|.+++|+. .++||.|.|++|+.++||||
T Consensus 3 ~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe 82 (429)
T COG0124 3 KIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPE 82 (429)
T ss_pred CccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEeccc
Confidence 46889999999999999999999999999999999999999999999999888876 48999999999999999999
Q ss_pred ChHHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEE
Q 003117 506 LTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 506 lT~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
+|+|++|++++|. ..|+|+||+|+|||||+||.||+|||||||+|+| |||+|.++.+++++||+.+|+|+
T Consensus 83 ~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~~~l~ 162 (429)
T COG0124 83 LTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGGFTLE 162 (429)
T ss_pred CcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999874 3589999999999999999999999999999998 99999999999999999999999
Q ss_pred EcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccc
Q 003117 576 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 655 (846)
Q Consensus 576 Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~ 655 (846)
|||+++++++++++|+ +++..+++.|++++|. ++.+| .+.+......+.|..|....+...++++.+..
T Consensus 163 iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~L-~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~---- 231 (429)
T COG0124 163 INSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLEL-DEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE---- 231 (429)
T ss_pred EcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHHh-hhhhhhhhhhchHHHHHhccchHHHHHhccHH----
Confidence 9999999999999999 7788999999998765 22222 22222333455666666655554444443321
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccchhhhhhCCCCcc
Q 003117 656 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMFGTKQVP 723 (846)
Q Consensus 656 ~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~Li~~fg~~~~p 723 (846)
... ....+++++++++.++|+.+|+ ++.+||+++||+||||| .++||+|||||+|++.||++++|
T Consensus 232 i~~-~~~~e~~~~~~~v~~~L~~~g~--~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~p 308 (429)
T COG0124 232 LLD-YLDEESLEHLEELLALLDALGI--SYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTP 308 (429)
T ss_pred hhh-hccHHHHHHHHHHHHHHHHcCC--CEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCC
Confidence 111 1123688999999999999994 49999999999999999 35899999999999999999999
Q ss_pred ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHhcC
Q 003117 724 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHK-KVMKLIDRARESK 801 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~-~l~~~~~~A~~~g 801 (846)
||||++|+|||+.++.+.+. ..|.+.+++|+|+++++ ...+++++++.||++|+++++++.. ++++++++|++.|
T Consensus 309 avGFaiGveRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g 385 (429)
T COG0124 309 AVGFAIGVERLILALEEEGK---EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLG 385 (429)
T ss_pred ceeEehHHHHHHHHHHHcCC---CCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHCC
Confidence 99999999999999988653 23456789999999998 4589999999999999999999965 4999999999999
Q ss_pred CCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 802 IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 802 i~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++|+||+|++|+++|+|+||||.+++|..++++++++.++..+
T Consensus 386 ~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 386 ARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred CCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999987653
No 8
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=2.1e-75 Score=657.08 Aligned_cols=309 Identities=25% Similarity=0.269 Sum_probs=279.3
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|++++.+++|+|++ +|| ||+|+++|+++|||||++|||+|++|+|| +|++++.
T Consensus 43 ~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi--------~sha~GvG~~l~~~~vRa~m~~Rln~l~~G~SGV~~~vv~~ 114 (444)
T cd00332 43 KPVYGVNTGFGALADVRIDDADLRALQRNLL--------RSHAAGVGPPLPEEVVRAAMLLRLNSLARGHSGVRPEVLER 114 (444)
T ss_pred CceeeeCCCCCCcCCcccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHH
Confidence 479999999 7999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCccccc---------------------------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLNSQTETLQF---------------------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~~g~~~~~~---------------------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|.+++|+|.+|.++ +|+.|.+|||++|.| + |++
T Consensus 115 L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~l~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~KegLALin-g-ta~ 192 (444)
T cd00332 115 LVALLNAGVTPVVPERGSVGASGDLAPLAHIALALIGEGEVFYKGERMPAAEALARAGLEPLELGAKEGLALIN-G-TAV 192 (444)
T ss_pred HHHHHhCCCcccCCCCCCcccccchHHHHHHHHHHcCCCcEEECCEEeeHHHHHHHcCCCCCCCCCcchhhhhh-c-cHH
Confidence 98877777666322 599999999954444 4 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCC-------CCCc
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG-------KMKS 204 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~-------~~D~ 204 (846)
|+|+++++++++++|++++++++|||+|+++|+.+||+|++ |++||||||+++|++||.+|+||+++. -|||
T Consensus 193 ~~a~aalal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~-~~~rphpGq~~~A~~lr~lL~gs~l~~~~~~~~~lQDp 271 (444)
T cd00332 193 MTALAALALHDAERLLDLADIAGALSLEALRGSDAPFDPRI-HAARPHPGQIEVAANLRALLAGSSLWESHDGERRVQDP 271 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhcCHhH-HhhCCChhHHHHHHHHHHHhCCCccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999998 699999999999999999999999983 3599
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHh
Q 003117 205 EDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALAAAIHNLGESSLYRAKMN 272 (846)
Q Consensus 205 yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l 272 (846)
|||||+|||||+++|+++++++++++||||++|. +++.+|||| +.++|+|++|++++|++||||+.+|
T Consensus 272 ySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPli~~~~~~v~~ggNF~~~~va~a~D~l~iala~la~~s~rr~~~L 351 (444)
T cd00332 272 YSLRCAPQVHGAARDALRYAARVLEIELNSVTDNPLVDPDNGEVLSGGNFHGQPVALAMDFLAIALAELANLSERRIARL 351 (444)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999992 337789998 4457999999999999999999999
Q ss_pred cCCCCCCCCCcccccC-----------------CCCCCcccc---ccccccCCCcccccccchHHHHHH----HHHHHHH
Q 003117 273 LNSINSDGLRSLFEKD-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKI 328 (846)
Q Consensus 273 ~~~~~~~gLp~fL~~~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~i 328 (846)
+||.+| |||+||+++ +++++.+++ +|++|||.+ ||||||||+.++++ ++|+++|
T Consensus 352 ~~p~~~-gLp~fL~~~~g~~~Gf~~~q~~aaal~ae~r~la~P~s~~s~~~s~~-~ED~~Sm~~~aa~~~~~~v~~~~~i 429 (444)
T cd00332 352 VNPALS-GLPAFLVADPGLNSGFMIAQYTAAALVAENKALAHPASVDSIPTSAG-QEDHVSMGLIAARKLREIVDNLRRI 429 (444)
T ss_pred cCcccc-CCChhhCCCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCccccCC-ccchhccHHHHHHHHHHHHHHHHHH
Confidence 999998 999999975 234444555 799999999 99999999986655 5889999
Q ss_pred HHHHHHHHHHhhhcc
Q 003117 329 VTWEAVLAFVALEGG 343 (846)
Q Consensus 329 laiEl~~a~qa~~~~ 343 (846)
+|||+++|+||+|++
T Consensus 430 lAiell~a~QA~dlr 444 (444)
T cd00332 430 LAIELLAAAQALDLR 444 (444)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999985
No 9
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=3.2e-74 Score=654.04 Aligned_cols=309 Identities=24% Similarity=0.262 Sum_probs=256.0
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|++++..++|+|++ +|| ||+|++||+++|||+|++|+|+|++|+|| +|++++.
T Consensus 48 ~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll--------~~h~~gvG~~l~~~~vRa~m~~Rln~l~~G~SGv~~e~v~~ 119 (473)
T PF00221_consen 48 KPIYGVNTGFGALKDVRIPPEELAELQRNLL--------RSHAAGVGPPLPPEVVRAAMLLRLNSLARGYSGVRPELVER 119 (473)
T ss_dssp CTCTTTSBSSGGGTTSBC-GHHHHHHHHHHH--------HHH---EEEEB-HHHHHHHHHHHHHHHTTSTS---HHHHHH
T ss_pred CceeccccCCccccCCcCCHHHHHHHHHHHH--------HhhccccccCCCHHHHHHHHHHHHHHHccCCCccCHHHHHH
Confidence 369999999 7899999999999999999 999 99999999999999999999999999999 5679999
Q ss_pred HHHhhhcCCccccc---------------------------------------------cccccCcchhhhhhcCChhHH
Q 003117 97 ISETLNSQTETLQF---------------------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 97 l~~~~~~g~~~~~~---------------------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
|.+++|+|++|.++ +|++|++|||++|.| + |++
T Consensus 120 l~~~ln~~i~P~Vp~~GSvGaSGDL~pLahial~l~Geg~v~~~G~~~~a~eal~~~gl~p~~l~~kEgLAlin-G-t~~ 197 (473)
T PF00221_consen 120 LVEMLNRGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYDGERMPAAEALARAGLEPLELGPKEGLALIN-G-TAV 197 (473)
T ss_dssp HHHHHHHTEEE-BEEES-SSSSSSHHHHHHHHHHHTTSTTEEECTEEEEHHHHHHHTT-SS---TTTHHHHHHS-S-SHH
T ss_pred HHHHHhCCCCceeeCCCCCCccccHHHHHHHHHHHcCCcceeecceeccHHHHHHhcCcCCeecCCcchHHHHh-c-cHH
Confidence 99877777666322 699999999955555 4 469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC----CCcccc
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK----MKSEDI 207 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~----~D~ysl 207 (846)
|+|+++++++++++|++++|+++||++||++|+.+||||++ |++||||||+++|++||++|+||+++.. ||||||
T Consensus 198 ~~a~aalal~~a~~ll~~a~~~~Als~Eal~g~~~~f~~~~-~~~rph~Gq~~~A~~lr~lL~gS~l~~~~~~vQDpySl 276 (473)
T PF00221_consen 198 STALAALALHDARRLLRLADIVAALSLEALRGNPSPFDPRV-HAARPHPGQIESAANLRELLKGSYLWSSHDRVQDPYSL 276 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHH-HHTST-HHHHHHHHHHHHHHTT-SSSBHHHCSSS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh-hcccCCchHHHHHHHHHHhhCCCcCcccccccCCccee
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999954 699999
Q ss_pred cchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 003117 208 LEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALAAAIHNLGESSLYRAKMNLNS 275 (846)
Q Consensus 208 Rc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l~~~ 275 (846)
||+|||||+++|+++++++++++||||++|. +.+.+|||| ++++|+|++|++++|++||||+.+|+||
T Consensus 277 Rc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPlv~~~~~~v~~ggnF~~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p 356 (473)
T PF00221_consen 277 RCAPQVHGAARDALAHAREVVEIELNSATDNPLVFPDDGRVLSGGNFHGQPVALAMDALAIALAHLANLSERRIARLVNP 356 (473)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTS--SSSEEEGGGTEEE-S-TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eehHHHhHHHHHHHHHHHHHHHHHHcCCCCCceEecCCCeeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999992 347778998 4457999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCC------------------cccc---ccccccCCCcccccccchHHHHHH----HHHHHHHHH
Q 003117 276 INSDGLRSLFEKDCSSGD------------------NLRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKIVT 330 (846)
Q Consensus 276 ~~~~gLp~fL~~~~~~~~------------------~~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~ila 330 (846)
.+|+|||+||+++ ++.+ .+++ +||+|||++ ||||||||+.++++ ++|+++|+|
T Consensus 357 ~~~~gLP~fL~~~-~g~~~G~~~~q~~aaaL~aE~r~La~P~s~~s~pts~~-~ED~~Sm~~~aa~k~~~~v~~~~~ilA 434 (473)
T PF00221_consen 357 AFNNGLPPFLAAE-PGLNSGFMILQYTAAALVAENRHLANPASIDSIPTSGG-QEDHVSMGPLAARKLRRIVENLRYILA 434 (473)
T ss_dssp TTTTTS-GGGSSS-CTTB-TTHHHHHHHHHHHHHHHHHTS-SCGGG--BTTT-TBSS---HHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCChhhcCC-CCCCcccchHhHHHHHHHHHHHhhccCcccccccchhh-hhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9988999999986 3333 2444 799999999 99999999985554 588999999
Q ss_pred HHHHHHHHhhhcc
Q 003117 331 WEAVLAFVALEGG 343 (846)
Q Consensus 331 iEl~~a~qa~~~~ 343 (846)
||+++|+||+|++
T Consensus 435 iell~a~QA~dlr 447 (473)
T PF00221_consen 435 IELLAAAQALDLR 447 (473)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999999
No 10
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=1.8e-72 Score=650.73 Aligned_cols=307 Identities=19% Similarity=0.196 Sum_probs=271.0
Q ss_pred ceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCC------CCCCHHHHHHHHHHHHHHhcCCCCC-hh
Q 003117 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP------KTLTLEESRAFLTVLLNKLLLGSSI-RT 91 (846)
Q Consensus 23 ~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g------~~l~~~~vRa~m~~rln~l~~G~SG-~~ 91 (846)
+||||||| +++++| ++...||+|++ +|| +||| ++||+++|||||++|+|+|++|||| .+
T Consensus 97 ~iYGVtTGfG~~~d~ri--~~~~~LQ~nLi--------rshaaGvg~~~~~g~~lp~~~VRAaMliRlNsL~~G~SGVr~ 166 (706)
T PLN02457 97 DSYGVTTGFGATSHRRT--KQGGALQRELI--------RFLNAGIFGTGESGHTLPASATRAAMLVRINTLLQGYSGIRF 166 (706)
T ss_pred eeeeecCCCCCccCCch--hHHHHHHHHHH--------HHHhcCcCCCCCCCCCCCHHHHHHHHHHHHHHhccCCCCCCH
Confidence 67888888 566666 56777888888 999 9997 9999999999999999999999999 45
Q ss_pred hHHHHHHHhhhcCCccccc------------------------------------------------cc--cccCcchhh
Q 003117 92 AFAVLISETLNSQTETLQF------------------------------------------------ES--VDVTEDERI 121 (846)
Q Consensus 92 ~~~~~l~~~~~~g~~~~~~------------------------------------------------~p--~~l~~keg~ 121 (846)
++++.|.+++|+|++|.++ +| +.|++|||+
T Consensus 167 evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~Pp~~~L~~KEGL 246 (706)
T PLN02457 167 EILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIEGGFFELQPKEGL 246 (706)
T ss_pred HHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCCCCCcCCCCCcch
Confidence 7999988877777666321 35 999999995
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCC--
Q 003117 122 VLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLV-- 199 (846)
Q Consensus 122 ~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~-- 199 (846)
+|.| | |++|+|++++++++|++|+.+|++++|||+|||+|+++||||++ |++||||||+++|++||.+|+||+++
T Consensus 247 ALiN-G-Ta~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~i-h~~RpHpGQ~e~Aa~ir~lL~GS~l~~~ 323 (706)
T PLN02457 247 ALVN-G-TAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLT-HKLKHHPGQIEAAAIMEHILDGSSYMKA 323 (706)
T ss_pred hccc-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHH-HhcCCChhHHHHHHHHHHHhCcCccchh
Confidence 5544 4 57999999999999999999999999999999999999999998 59999999999999999999999997
Q ss_pred ------------CCCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHH
Q 003117 200 ------------GKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALA 255 (846)
Q Consensus 200 ------------~~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~ 255 (846)
..||||||||+||||||++|+|++++++|++||||++|. +++.+|||| +.++|+|+
T Consensus 324 ~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~amD~l~ 403 (706)
T PLN02457 324 AKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMDNTR 403 (706)
T ss_pred hhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHHHHHH
Confidence 235999999999999999999999999999999999993 237789999 44479999
Q ss_pred HHHHHHHhHHHHHHHHhcCCCCCCCCCccccc--C-----------------CCCCCcccc---ccccccCCCccccccc
Q 003117 256 AAIHNLGESSLYRAKMNLNSINSDGLRSLFEK--D-----------------CSSGDNLRK---TYKLVLDANFEEDYVK 313 (846)
Q Consensus 256 ~a~~~l~~~serR~~~l~~~~~~~gLp~fL~~--~-----------------~~~~~~~~~---~ds~~~s~~~qedhvs 313 (846)
+|++++|++|+||+.+|+||.+|+|||+||++ + ++|++.+++ +|++|+|.+ ||||+|
T Consensus 404 lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~-nED~~S 482 (706)
T PLN02457 404 LAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQH-NQDVNS 482 (706)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCC-ccccCC
Confidence 99999999999999999999998999999983 3 344444666 799999999 999999
Q ss_pred chHHHHHH----HHHHHHHHHHHHHHHHHhhhcc
Q 003117 314 FLHEANVL----LGMVWKIVTWEAVLAFVALEGG 343 (846)
Q Consensus 314 m~~~~~~~----~~~~~~ilaiEl~~a~qa~~~~ 343 (846)
||+.++++ ++|++.++|||+++||||+|++
T Consensus 483 mg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR 516 (706)
T PLN02457 483 LGLISARKTAEAVDILKLMSSTYLVALCQAIDLR 516 (706)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99986665 5889999999999999999998
No 11
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=6.8e-70 Score=628.61 Aligned_cols=310 Identities=19% Similarity=0.198 Sum_probs=272.3
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCC-------CCCHHHHHHHHHHHHHHhcCCCCC-
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPK-------TLTLEESRAFLTVLLNKLLLGSSI- 89 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~-------~l~~~~vRa~m~~rln~l~~G~SG- 89 (846)
.+||||||| ++++++ ++...||+|++ ++| +|+|+ +||+++|||+|++|+|+|++||||
T Consensus 81 ~~IYGVnTGfG~~~d~r~--~~~~~lQ~~Li--------r~h~aGvg~~~~~~~~~lp~~~vRAaMlvRlNsL~~G~SGV 150 (680)
T TIGR01226 81 TDVYGVTTGFGGTSHRRT--KQGGALQKELL--------RFLNAGILGTGSDNHNSLPEEATRAAMLVRINTLLQGYSGI 150 (680)
T ss_pred CeeeeecCCCCCccCccc--hHHHHHHHHHH--------HHHhcCCCCCCCcCCCcCCHHHHHHHHHHHHHHhccCCCCC
Confidence 479999999 677777 46888999999 999 99998 999999999999999999999999
Q ss_pred hhhHHHHHHHhhhcCCccccc------------------------------------------------cc-cccCcchh
Q 003117 90 RTAFAVLISETLNSQTETLQF------------------------------------------------ES-VDVTEDER 120 (846)
Q Consensus 90 ~~~~~~~l~~~~~~g~~~~~~------------------------------------------------~p-~~l~~keg 120 (846)
.+++++.|.+++|.|++|.++ +| ++|++|||
T Consensus 151 r~evle~l~~lLN~~i~P~VP~rGSIGASGDL~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~~aGl~p~~~L~pKEG 230 (680)
T TIGR01226 151 RFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALKLAGIEGGFELQPKEG 230 (680)
T ss_pred CHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHHHcCCCCCCCCCCccc
Confidence 457999988877777666321 47 99999999
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCC
Q 003117 121 IVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG 200 (846)
Q Consensus 121 ~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~ 200 (846)
++|.| + |++|+|++++++++|++|+.++++++||++|+|+|+++ |++.++|++||||||+++|++||.+|+||+++.
T Consensus 231 LALvN-G-Ta~~~a~aalal~~a~~L~~~a~v~~Al~~Eal~G~~~-~~~~~~~~~RpHpGQ~e~Aa~ir~lL~GS~l~~ 307 (680)
T TIGR01226 231 LAIVN-G-TAVGASMASLVLFEANILALLAEVLSAMFCEVMNGKPE-FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYAK 307 (680)
T ss_pred hhhhc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc-CChHHHHHcCCCCcHHHHHHHHHHHhCCChhhh
Confidence 54444 4 57999999999999999999999999999999999999 666656799999999999999999999999874
Q ss_pred --------------CCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHH
Q 003117 201 --------------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALAL 254 (846)
Q Consensus 201 --------------~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l 254 (846)
.||||||||+||||||++|+|++++++|++||||++|. +.+.+|||| +.++|.+
T Consensus 308 ~~~~~~~~~~~~~~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF~g~~ia~amD~l 387 (680)
T TIGR01226 308 HAEKEVEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNFQGTPIGVSMDNT 387 (680)
T ss_pred hhhhccccCccCCcCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCCCchHHHHHHHHH
Confidence 35999999999999999999999999999999999993 337779999 4447999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCCCCCCCccccc--C-----------------CCCCCcccc---ccccccCCCcccccc
Q 003117 255 AAAIHNLGESSLYRAKMNLNSINSDGLRSLFEK--D-----------------CSSGDNLRK---TYKLVLDANFEEDYV 312 (846)
Q Consensus 255 ~~a~~~l~~~serR~~~l~~~~~~~gLp~fL~~--~-----------------~~~~~~~~~---~ds~~~s~~~qedhv 312 (846)
++|++++|++|+||+.+|+||.+|+|||+||++ + +++++.+++ ++++|+|.+ ||||+
T Consensus 388 ~lAla~lg~ls~~r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~~~a~~~-nEDv~ 466 (680)
T TIGR01226 388 RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHVQSAEQH-NQDVN 466 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCccccccC-ccccc
Confidence 999999999999999999999998899999994 3 233333555 799999999 99999
Q ss_pred cchHHHHHH----HHHHHHHHHHHHHHHHHhhhcccc
Q 003117 313 KFLHEANVL----LGMVWKIVTWEAVLAFVALEGGEL 345 (846)
Q Consensus 313 sm~~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~~ 345 (846)
|||+.++++ +++++.++|||++++|||+|++.+
T Consensus 467 Smg~~sArk~~~~ve~l~~m~A~eLl~a~QAlDLR~l 503 (680)
T TIGR01226 467 SLGLISARKTAEAVDILKLMLATYLYALCQAVDLRHL 503 (680)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986665 578999999999999999999843
No 12
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=6.8e-67 Score=603.93 Aligned_cols=391 Identities=31% Similarity=0.513 Sum_probs=348.0
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcCCCCeEeeCCCChHH
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
.++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..+.|+. .++||+|.|++|+.++||||+|+|
T Consensus 70 ~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~ 149 (487)
T PLN02530 70 VNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPS 149 (487)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHH
Confidence 7999999999999999999999999999999999999999999999998776754 578999999999999999999999
Q ss_pred HHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCC--ceEEEEc
Q 003117 510 FARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIG--DYEIKLN 577 (846)
Q Consensus 510 iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~--~~~i~In 577 (846)
+||+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||++ ++.|+||
T Consensus 150 iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~ 229 (487)
T PLN02530 150 LARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVS 229 (487)
T ss_pred HHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEc
Confidence 999999863 4799999999999999999999999999999998 999999999999999996 6999999
Q ss_pred chhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccccc
Q 003117 578 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 657 (846)
Q Consensus 578 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~ 657 (846)
|+++++.+++.++++.+++..++..++++++..++++++.| ...+++.+..+.+..++.+. .++++.. +.
T Consensus 230 ~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L-~~~~~~~~~~~~l~~l~~~~-----~~~~l~~----~~ 299 (487)
T PLN02530 230 SRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKEL-DTLGVSEEAIEGILDVLSLK-----SLDDLEA----LL 299 (487)
T ss_pred CHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHH-HHcCCCHHHHHHHHHHHhcc-----CHHHHHH----Hh
Confidence 99999999999999998888999999999988888886554 66889888888877766442 2333432 11
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-----------CCcccCCCccchhhhhhCCCCcccee
Q 003117 658 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTKQVPAVG 726 (846)
Q Consensus 658 ~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-----------~g~ia~GGRYD~Li~~fg~~~~pAVG 726 (846)
. ...+++++|+.++++++.+|+..++.|||+++||++|||| .++|++|||||+|++.||+++.||||
T Consensus 300 ~--~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pAvG 377 (487)
T PLN02530 300 G--ADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPACG 377 (487)
T ss_pred h--hhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCeeE
Confidence 1 1246899999999999999998889999999999999999 13699999999999999988899999
Q ss_pred ecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCCE
Q 003117 727 VSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPW 804 (846)
Q Consensus 727 fsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~~ 804 (846)
|++|++||+.++.+.+. .+.|. .++||+|++.++ ...++++++++||++|++|++++. .++++++++|++.|++|
T Consensus 378 Fa~g~~~l~~~l~~~g~--~p~~~-~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~~~ 454 (487)
T PLN02530 378 FGFGDAVIVELLKEKGL--LPELP-HQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAERIGAKR 454 (487)
T ss_pred EEEhHHHHHHHHHhcCC--CCCCC-CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCE
Confidence 99999999888866432 12243 578999999886 678999999999999999999884 56999999999999999
Q ss_pred EEEEcCcccccCeEEEEECCCCceeeechHHH
Q 003117 805 MVIVGERELNEGIVKLKNIDTTQEEVISRSNF 836 (846)
Q Consensus 805 iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 836 (846)
++++|++|.++++|+||++.++++.+|++++|
T Consensus 455 iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 455 LVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred EEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 99999999999999999999999999998775
No 13
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-66 Score=590.24 Aligned_cols=392 Identities=35% Similarity=0.593 Sum_probs=347.5
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccC--CC-cCceEEEEcCCCCeEeeCCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--ED-SKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g--~~-~~~~y~~~D~~G~~l~LRpDl 506 (846)
..++|+|++||+|.++..++++++.++++|++|||.+|.||+|||+|+|..++| +. .+++|+|+|++|+.++||||+
T Consensus 3 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~ 82 (423)
T PRK12420 3 EMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDL 82 (423)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccc
Confidence 367899999999999999999999999999999999999999999999976544 22 478999999999999999999
Q ss_pred hHHHHHHHHHcC--CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEc
Q 003117 507 TVPFARYVAMNG--LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLN 577 (846)
Q Consensus 507 T~~iaR~~a~~~--~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~In 577 (846)
|+|+||+++++. ..|+|+||+|+|||+++++.||+|||+|+|+|+| |+|+|.++.++|+.||+ ++.|+||
T Consensus 83 T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~-~~~i~l~ 161 (423)
T PRK12420 83 TIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNL-EVTIQYN 161 (423)
T ss_pred cHHHHHHHHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCC-CEEEEEc
Confidence 999999999863 4589999999999999999999999999999998 99999999999999999 7999999
Q ss_pred chhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccccc
Q 003117 578 HRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 657 (846)
Q Consensus 578 h~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~ 657 (846)
|+++++.+++.||++.+.+..++..++++++.++.++.+.| ...+++....+.|..|+.. ++. +.++.+.. ..
T Consensus 162 ~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l-~~~~l~~~~~~~l~~l~~~-~~~-~~~~~~~~----~~ 234 (423)
T PRK12420 162 NRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDL-LERGISEEMADTICNTVLS-CLQ-LSIADFKE----AF 234 (423)
T ss_pred CHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHH-HHcCCCHHHHHHHHHHHhc-cCh-hhHHHHHH----hc
Confidence 99999999999999999888898888998888888886655 4568999999999998844 444 34555542 22
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------C-----CcccCCCccchhhhhhCC--CCcc
Q 003117 658 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------V-----GSIAAGGRYDNLIGMFGT--KQVP 723 (846)
Q Consensus 658 ~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~-----g~ia~GGRYD~Li~~fg~--~~~p 723 (846)
.++...+++++|++++++++.+|+..++.|||+++|+++|||| . .+||+|||||+|++.|++ .+.|
T Consensus 235 ~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~p 314 (423)
T PRK12420 235 NNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYP 314 (423)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCC
Confidence 3455678999999999999999998889999999999999999 1 269999999999999965 4689
Q ss_pred ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCCcHHHHHHHHHHHHH-CCCeEEEEcC-CCHHHHHHHHHhcC
Q 003117 724 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWN-AKVKAEYMVH-KKVMKLIDRARESK 801 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~~~~a~~la~~Lr~-~GI~ael~~~-~~l~~~~~~A~~~g 801 (846)
||||++++|||+.++...+ +...++||+|++.++ ...+.+++++||+ +||+|+++.. .++++++++|.+.|
T Consensus 315 AvGfa~~~~~l~~~l~~~~------~~~~~~dvlI~~~~~-~~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g 387 (423)
T PRK12420 315 TVGISFGLDVIYTALSQKE------TISSTADVFIIPLGT-ELQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANKEN 387 (423)
T ss_pred ceeEEEcHHHHHHHHHhcC------CCCCCceEEEEEcCC-HHHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcC
Confidence 9999999999998887532 223578999999864 4579999999999 9999999984 57999999999999
Q ss_pred CCEEEEEcCcccccCeEEEEECCCCceeeechHHH
Q 003117 802 IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNF 836 (846)
Q Consensus 802 i~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 836 (846)
++|++++|++|.++++|+||++.++++.+|+++++
T Consensus 388 ~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 388 IPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred CCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999999999999999999998875
No 14
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-61 Score=551.02 Aligned_cols=381 Identities=21% Similarity=0.308 Sum_probs=310.8
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCCC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpDl 506 (846)
.++|+|++||+|.++..++.+++.++++|++|||.+|.||+||+.|+|..++|++ .++||+|.|++|+.++||||+
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~ 83 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEG 83 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCC
Confidence 4789999999999999999999999999999999999999999999998776743 278999999999999999999
Q ss_pred hHHHHHHHHHcC----CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEE
Q 003117 507 TVPFARYVAMNG----LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 507 T~~iaR~~a~~~----~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
|+|+||+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||++++.|+
T Consensus 84 T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~~~~i~ 163 (430)
T CHL00201 84 TAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKNLILD 163 (430)
T ss_pred cHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCCceEEE
Confidence 999999988753 3588999999999999999999999999999998 99999999999999999999999
Q ss_pred EcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHH----HhcC-ChHHHHHHHH
Q 003117 576 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFV----KERG-SPLVLLSKLR 650 (846)
Q Consensus 576 Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~----~~~g-~~~~~l~~l~ 650 (846)
|||+++++..-. ....+...+. ++.. +++....+.+..++ ...+ ...++++...
T Consensus 164 l~~~~~~~~~~~-------~~~~l~~~l~------------~~~~--~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~ 222 (430)
T CHL00201 164 INSIGKLEDRQS-------YQLKLVEYLS------------QYQD--DLDTDSQNRLYSNPIRILDSKNLKTQEILDGAP 222 (430)
T ss_pred ECCCCchhhHHH-------HHHHHHHHHH------------HHHh--hcCHHHHHHHHhhhHHHhhccCccHHHHHhhhH
Confidence 999998774110 1111111111 1110 12333333333221 1111 1112332222
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccchhhhhhC
Q 003117 651 QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMFG 718 (846)
Q Consensus 651 ~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~Li~~fg 718 (846)
. +. +....+++++|+.+.++++.+|+ .+.|||+++||++|||| .++|++|||||+|++.||
T Consensus 223 ~----l~-~~~~~~~~~~l~~~~~~l~~~g~--~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg 295 (430)
T CHL00201 223 K----IS-DFLSLESTEHFYDVCTYLNLLNI--PYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLG 295 (430)
T ss_pred H----HH-hhhhHHHHHHHHHHHHHHHHcCC--cEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhC
Confidence 1 11 11235688899999999999987 49999999999999999 136999999999999998
Q ss_pred CCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHH
Q 003117 719 TKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDR 796 (846)
Q Consensus 719 ~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~ 796 (846)
+++.|||||++++|||+.++.+.. .. +..+++|+|++.++ ...++++++++||++|++|++++. .++++++++
T Consensus 296 ~~~~PavGfa~g~erl~~~l~~~~----~~-~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~ 370 (430)
T CHL00201 296 GPKTPAVGCAIGLERLLLIAKDNI----IL-PKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQ 370 (430)
T ss_pred CCCCCeeEEEecHHHHHHHHhccc----cC-CCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHH
Confidence 888999999999999999886521 11 23568899999886 678999999999999999999884 569999999
Q ss_pred HHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 797 ARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 797 A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
|++.|+++++++|++|.++++|+||++.++++..++++++++.+.++-
T Consensus 371 A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~ 418 (430)
T CHL00201 371 AGKKRAKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLK 418 (430)
T ss_pred HHHcCCCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887653
No 15
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-62 Score=524.90 Aligned_cols=313 Identities=19% Similarity=0.165 Sum_probs=273.4
Q ss_pred ceeEeecC----CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCC---CCC-CHHHHHHHHHHHHHHhcCCCCChh-h
Q 003117 23 SVYAISNG----LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP---KTL-TLEESRAFLTVLLNKLLLGSSIRT-A 92 (846)
Q Consensus 23 ~vygi~tg----~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g---~~l-~~~~vRa~m~~rln~l~~G~SG~~-~ 92 (846)
++|||+|| ..++.|++.+++.+|-|++ ++| .|.| .|+ |..-+||.|++|+|.|++||||++ +
T Consensus 114 ~vYGvTTGFG~t~~r~t~~~~aLqk~~i~ll--------~a~~~g~g~~~s~~~P~~rtR~~m~lRIN~L~qGySGI~~E 185 (715)
T KOG0222|consen 114 DVYGVTTGFGATSHRRTIPGEALQKELIRLL--------NAGIFGYGKDTSPTLPNPRTRAAMLLRINTLLQGYSGIRFE 185 (715)
T ss_pred ceeeeeccccccccccccCHHHHHHHHHHHH--------HhcCcccCCCCCCCCCcHHHHHHHHHHHHHHHhccccccHH
Confidence 58999999 4688999999999999999 899 8998 554 555999999999999999999966 4
Q ss_pred HHHHHHHhhh---------cCCccc--------cc-------------------------------cc-cccCcchhhhh
Q 003117 93 FAVLISETLN---------SQTETL--------QF-------------------------------ES-VDVTEDERIVL 123 (846)
Q Consensus 93 ~~~~l~~~~~---------~g~~~~--------~~-------------------------------~p-~~l~~keg~~l 123 (846)
+++.+..++| +|.+++ |+ .| +.|+||||++|
T Consensus 186 ~leai~~~~N~~~~p~lP~rGTi~aSGDL~PLs~iA~~L~G~pn~K~~~P~~~~~~A~~a~k~~gls~f~eL~PKEGLAL 265 (715)
T KOG0222|consen 186 ILEAITSLLNANITPYLPLRGTITASGDLVPLSYIAGGLTGRPNSKMWGPSGEWLTAKEAFKLAGLSPFFELQPKEGLAL 265 (715)
T ss_pred HHHHHHHHHhcCcccccCcCcccccCCCcccHHHHhhhhcCCCCCcccCCCCCcccHHHHHHHcCCCcceecccccceee
Confidence 6666555445 444431 11 46 79999999555
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCC---
Q 003117 124 EKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG--- 200 (846)
Q Consensus 124 ~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~--- 200 (846)
.| + +++.+|+++.++.+|..+...||+++||+.|.+.|.++.||+.+ |.+||||||+++|.+||.+|.||....
T Consensus 266 vN-G-Tav~s~L~s~vl~~An~ia~~aev~sAl~~eVmkGk~e~~D~~~-Hrlk~H~GQieaA~~m~~iLd~ss~~ke~a 342 (715)
T KOG0222|consen 266 VN-G-TAVGSGLASTVLERANIIAVQAEVLSALFAEVMKGKPEFTDHLT-HRLKHHPGQIEAAARMEHILDGSSYPKEAA 342 (715)
T ss_pred ec-c-chHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccch-hhccCCCcHHHHHHHHHHHhcccccHHHHH
Confidence 55 5 45899999999999999999999999999999999999999997 699999999999999999999987653
Q ss_pred -----------CCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHHHH
Q 003117 201 -----------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALAAA 257 (846)
Q Consensus 201 -----------~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~~a 257 (846)
.||+|.|||.|||||++.|+|+++++++++||||++|. ++.++|||| +-++|++++|
T Consensus 343 e~Hr~dpl~k~~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNFqGt~~~~AmD~~~la 422 (715)
T KOG0222|consen 343 ESHRMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVAMDNLRLA 422 (715)
T ss_pred HHhccCccccchhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCccCCCcchhhhhHHHHH
Confidence 23999999999999999999999999999999999993 447889999 5558999999
Q ss_pred HHHHHhHHHHHHHHhcCCCCCCCCCcccccC-------------------CCCCCcccc---ccccccCCCcccccccch
Q 003117 258 IHNLGESSLYRAKMNLNSINSDGLRSLFEKD-------------------CSSGDNLRK---TYKLVLDANFEEDYVKFL 315 (846)
Q Consensus 258 ~~~l~~~serR~~~l~~~~~~~gLp~fL~~~-------------------~~~~~~~~~---~ds~~~s~~~qedhvsm~ 315 (846)
++++|+||+||+.+|||+-.|+|||.||+++ |++++-|++ +|++|+|.+ +|||+|||
T Consensus 423 iaei~kl~~~q~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~~sas~~-nqD~~SlG 501 (715)
T KOG0222|consen 423 IAEIGKLMFAQFEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHVQSASQH-NQDVNSLG 501 (715)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccccchhhh-cccchhhc
Confidence 9999999999999999999999999999983 677777888 899999999 99999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhhhcccccc
Q 003117 316 HEANVL----LGMVWKIVTWEAVLAFVALEGGELLG 347 (846)
Q Consensus 316 ~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~~~~ 347 (846)
-+++|+ ++-+..++++||++||||+||+.++.
T Consensus 502 ~~ssRKt~~aVe~lk~m~t~~LvA~CQ~id~rhLe~ 537 (715)
T KOG0222|consen 502 LISSRKTLEAVEILKLMSTTELVAACQAIDLRHLEE 537 (715)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhHhhhhH
Confidence 986665 45589999999999999999985543
No 16
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.7e-60 Score=536.25 Aligned_cols=352 Identities=31% Similarity=0.442 Sum_probs=312.3
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcC-CCCeEeeCCCChH
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQ-GGELCSLRYDLTV 508 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~-~G~~l~LRpDlT~ 508 (846)
.++|+|++||+|.++..++++++.++++|++|||.+|.||+||+.+++..+.|+. .++||+|.|+ +|+.++||||+|+
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcH
Confidence 5789999999999999999999999999999999999999999999997766654 5789999999 9999999999999
Q ss_pred HHHHHHHHc---CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcc
Q 003117 509 PFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNH 578 (846)
Q Consensus 509 ~iaR~~a~~---~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh 578 (846)
|+||+++++ ...|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.+|++++.|+|||
T Consensus 83 ~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~ 162 (391)
T PRK12292 83 QIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLPNFTLDLGH 162 (391)
T ss_pred HHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCCCeEEEecc
Confidence 999999975 35699999999999999999999999999999998 99999999999999999999999999
Q ss_pred hhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccc
Q 003117 579 RLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLE 658 (846)
Q Consensus 579 ~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~ 658 (846)
+++++++++.|+++++++..++..++++|+..++++. . +++.+..+.|..++.++| ..+++++++. +..
T Consensus 163 ~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~--~l~~~~~~~l~~l~~~~g-~~~~l~~~~~----~~~ 231 (391)
T PRK12292 163 VGLFRALLEAAGLSEELEEVLRRALANKDYVALEELV----L--DLSEELRDALLALPRLRG-GREVLEEARK----LLP 231 (391)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHH----h--cCCHHHHHHHHHHHHhcC-CHHHHHHHHH----hcc
Confidence 9999999999999999999999999999887766542 2 688888899999999899 4578887764 233
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------CC-cccCCCccchhhhhhCCCCccceeec
Q 003117 659 NSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------VG-SIAAGGRYDNLIGMFGTKQVPAVGVS 728 (846)
Q Consensus 659 ~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~g-~ia~GGRYD~Li~~fg~~~~pAVGfs 728 (846)
+.....++++|++++++++.+|+..++.|||+++|+++|||| .+ +|++|||||+|++.|| ++.|||||+
T Consensus 232 ~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~pAvGfa 310 (391)
T PRK12292 232 SLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFG-RARPATGFS 310 (391)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcC-CCCCCceEE
Confidence 445578999999999999999988889999999999999999 12 5999999999999995 589999999
Q ss_pred chHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCC
Q 003117 729 LGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKI 802 (846)
Q Consensus 729 igleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi 802 (846)
+++|||+.+ . . .+...+++++|++.++ ...++++++++||+.|++|++... .++++++++|++.|+
T Consensus 311 i~ldrl~~~--~-~-----~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 311 LDLDRLLEL--Q-L-----ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred eeHHHHHhh--c-c-----ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 999999874 1 1 0223456788888775 778899999999999999999885 458999999999998
No 17
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=2.1e-58 Score=523.29 Aligned_cols=367 Identities=34% Similarity=0.536 Sum_probs=313.3
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCCCh
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpDlT 507 (846)
++|+|++||+|.++..++++++.++++|++|||.+|.||+||+.++|..+.|+. .+++|+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999997765543 2689999999999999999999
Q ss_pred HHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEc
Q 003117 508 VPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLN 577 (846)
Q Consensus 508 ~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~In 577 (846)
+|+||+++++. ..|+|+||+|+|||+|+++.||+|||+|+|+|++ |+|+|.++.++|+.||++++.|+||
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~~~~i~i~ 160 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIKDFTLEIN 160 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 99999999863 4699999999999999999999999999999998 8899999999999999999999999
Q ss_pred chhhHHHHHHhcCCChHHHHHHHHHhhh-hChhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccc
Q 003117 578 HRLLLDGMLEICGVPSEKFRTICSSIDK-LDKQSFEQIKKEMVEE-KGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 655 (846)
Q Consensus 578 h~~ll~~il~~~gi~~~~~~~v~~~l~k-l~k~~~~~i~~eL~~~-~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~ 655 (846)
|+++++++++ .+..++++|++ +++...+.+. +++.. .++++...+.+..|+. ..+ ++++.+
T Consensus 161 ~~~i~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~------ 223 (397)
T TIGR00442 161 SLGILEGRLE-------YREALLRYLDKHLDKLGEDSVR-RLEKNPLRILDSKNEKIQELLK--EAP-KILDFL------ 223 (397)
T ss_pred CcccHHHHHH-------HHHHHHHHHHHhHhhcCHHHHH-HHhhccccCchhhhHHHHHHHh--cCH-HHHHHh------
Confidence 9999999997 35677788887 5654444433 23332 4566665666666543 222 222221
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC----------C--CcccCCCccchhhhhhCCCCcc
Q 003117 656 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------V--GSIAAGGRYDNLIGMFGTKQVP 723 (846)
Q Consensus 656 ~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----------~--g~ia~GGRYD~Li~~fg~~~~p 723 (846)
...++++|++++++++.+|+ ++.|||+++|+++|||| . ++|++|||||+|++.|++.+.|
T Consensus 224 ------~~~~~~~l~~l~~~l~~~~~--~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~ 295 (397)
T TIGR00442 224 ------DEESRAHFEELKELLDALGI--PYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTP 295 (397)
T ss_pred ------hHHHHHHHHHHHHHHHHcCC--CEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCc
Confidence 14688999999999999998 49999999999999999 1 4699999999999999877899
Q ss_pred ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcC
Q 003117 724 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESK 801 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~g 801 (846)
||||++++|||+.++.+.+.. + |...+++|+|++.++ ...++++++++||++||+|++++. .++++++++|++.|
T Consensus 296 avGfs~~~~~l~~~l~~~~~~--~-~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g 372 (397)
T TIGR00442 296 AVGFAIGIERLLLLLEELGLE--P-PEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLG 372 (397)
T ss_pred eEEeeecHHHHHHHHHhcCCC--C-CCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcC
Confidence 999999999999999875431 1 234678999999876 678899999999999999999874 57999999999999
Q ss_pred CCEEEEEcCcccccCeEEEEECCCC
Q 003117 802 IPWMVIVGERELNEGIVKLKNIDTT 826 (846)
Q Consensus 802 i~~iviIg~~e~~~g~V~Vk~l~~~ 826 (846)
++|+|+||++|.++++|+|||+.++
T Consensus 373 ~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 373 ARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred CCEEEEEChhHHhCCeEEEEeCCCC
Confidence 9999999999999999999999874
No 18
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.3e-57 Score=515.15 Aligned_cols=383 Identities=29% Similarity=0.472 Sum_probs=304.0
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpD 505 (846)
..++|+|++||+|.++..++++++.++++|++|||.+|.||+||+.++|..+.|++ .++||+|.|++|+.++||||
T Consensus 3 ~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd 82 (412)
T PRK00037 3 KIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPE 82 (412)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCC
Confidence 46899999999999999999999999999999999999999999999997765654 47899999999999999999
Q ss_pred ChHHHHHHHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcc
Q 003117 506 LTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNH 578 (846)
Q Consensus 506 lT~~iaR~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh 578 (846)
+|+|++|+++++...|+|+||+|+|||+|+++.||+|||+|+|+|+| |+|+|.++.++|+.||++++.+.+||
T Consensus 83 ~T~~~ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~~~~~~l~~ 162 (412)
T PRK00037 83 GTAPVVRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLKGLKLLINS 162 (412)
T ss_pred CcHHHHHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCCceeeeecc
Confidence 99999999998766999999999999999999999999999999998 79999999999999999888887776
Q ss_pred hhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHH-HHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccccc
Q 003117 579 RLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQ-IKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFL 657 (846)
Q Consensus 579 ~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~-i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~ 657 (846)
.+.+...+. .+..+..++++ +.....+ ....+.. .....+.... .+. .+.++... .+.
T Consensus 163 ~~~~~~~~~-------~~~~l~~~l~~-~~~~l~~~~~~~~~~------~~~~~~~~~~--~~~-~~~~~~~~----~~~ 221 (412)
T PRK00037 163 LGDFEIRAN-------YRKALVGFLEK-GLDELDEDSKRRLET------NPLRILDKKD--KED-QELLKDAP----KLL 221 (412)
T ss_pred CCCHHHhHH-------HHHHHHHHHHh-CchhhchHHHHHHhh------Cchhhhcccc--hhh-HHHHhcch----HHH
Confidence 654332111 11112222221 0000000 0000000 0000000000 010 11111110 000
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------C---CcccCCCccchhhhhhCCCCccce
Q 003117 658 ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V---GSIAAGGRYDNLIGMFGTKQVPAV 725 (846)
Q Consensus 658 ~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~---g~ia~GGRYD~Li~~fg~~~~pAV 725 (846)
......++++|+.+.++++.+|+ ++.|||+++|+++|||| . ++|++|||||+|++.|++++.|||
T Consensus 222 -~~~~~~~~~~l~~l~~~l~~~~~--~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav 298 (412)
T PRK00037 222 -DYLDEESKEHFEELKELLDALGI--PYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAV 298 (412)
T ss_pred -HHhhHHHHHHHHHHHHHHHHcCC--CEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceE
Confidence 00124577888889999998887 59999999999999999 1 379999999999999987789999
Q ss_pred eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCC
Q 003117 726 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIP 803 (846)
Q Consensus 726 GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~ 803 (846)
||++++|||+.++.+++ + +|++|+|++.++ ...++.++++.||++||+|+++.. .++++++++|.+.|++
T Consensus 299 Gfs~~le~l~~~l~~~~------~--~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~gi~ 370 (412)
T PRK00037 299 GFAIGVERLLLLLEELG------E--EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGAR 370 (412)
T ss_pred EEEEcHHHHHHHHHhcC------C--CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcCCC
Confidence 99999999999887643 2 578999999876 567899999999999999999874 5799999999999999
Q ss_pred EEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 804 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 804 ~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
|+++||++|.++++|+||++.++++..++++|+++++++.+
T Consensus 371 ~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 371 FVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred EEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998765
No 19
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.7e-56 Score=503.90 Aligned_cols=357 Identities=21% Similarity=0.290 Sum_probs=304.4
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcC-CCCeEeeCCCChH
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQ-GGELCSLRYDLTV 508 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~-~G~~l~LRpDlT~ 508 (846)
.++|+|++|++|.++..++++++.++++|++|||.+|.||+||+.|+|..+.|+. .+.+|+|.|+ +|+.++||||+|+
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 3689999999999999999999999999999999999999999999998776764 4679999999 6999999999999
Q ss_pred HHHHHHHHc--CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcch
Q 003117 509 PFARYVAMN--GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNHR 579 (846)
Q Consensus 509 ~iaR~~a~~--~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh~ 579 (846)
|+||+++++ ...|+|+||+|+|||+++++.||+|||+|+|+|++ |+|+|.++.++|+.||+++++|+|||+
T Consensus 87 ~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~~~~l~ig~~ 166 (392)
T PRK12421 87 QVARIDAHLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALHLDLGHV 166 (392)
T ss_pred HHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCH
Confidence 999998875 35699999999999998889999999999999998 999999999999999999999999999
Q ss_pred hhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccccccc
Q 003117 580 LLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLEN 659 (846)
Q Consensus 580 ~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~ 659 (846)
++++++++.++++++.+..++..++++++..++++ ....+++++.++.|..|+.+.|++ +.+++...... ..+
T Consensus 167 ~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~----~~~~~~~~~~~~~l~~L~~~~g~~-~~l~~~~~~~~--~~~ 239 (392)
T PRK12421 167 GIFRRLAELAGLSPEEEEELFDLLQRKALPELAEV----CQNLGVGSDLRRMFYALARLNGGL-EALDRALSVLA--LQD 239 (392)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHH----HHhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHhhcc--cCC
Confidence 99999999999999999999999998887766554 344678888888899999889976 56655442110 124
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCCCCccceeecc
Q 003117 660 SSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSL 729 (846)
Q Consensus 660 ~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~~~~pAVGfsi 729 (846)
+...+++++|+.+++.++.++....+.|||+++||++|||| ..+|++|||||+|++.||+ +.|||||++
T Consensus 240 ~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~-~~pAvGfai 318 (392)
T PRK12421 240 AAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGR-ARPATGFSM 318 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCC-CCCCceEEe
Confidence 55678999999999999988655679999999999999999 2369999999999999975 799999999
Q ss_pred hHHHHHHHHHHhhhhhhhccccCcceEEEEEcCCcHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEEc
Q 003117 730 GIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVG 809 (846)
Q Consensus 730 gleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviIg 809 (846)
++|||+.++... . ..+++|++.++. ..+++++++||+.|++|++++.... .++ +.++...++++
T Consensus 319 ~lerL~~~l~~~--------~--~~~~~~~~~~~~-~~~~~~a~~LR~~G~~~~~~~~~~~----~~~-~~~~~~~~~~~ 382 (392)
T PRK12421 319 DLKELLALQFLE--------E--EAGAILAPWGDD-PDLLAAIAELRQQGERVVQLLPGDD----GSS-EPGCDHRLVLQ 382 (392)
T ss_pred eHHHHHhhcccc--------c--CCceEEeecCCc-HHHHHHHHHHHhCCCEEEEeCCCcc----hhH-HhCCCeEEEEE
Confidence 999999876421 1 126788887653 4578999999999999999874422 234 55788888887
Q ss_pred Cc
Q 003117 810 ER 811 (846)
Q Consensus 810 ~~ 811 (846)
++
T Consensus 383 ~~ 384 (392)
T PRK12421 383 DG 384 (392)
T ss_pred CC
Confidence 43
No 20
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=2.8e-52 Score=458.24 Aligned_cols=293 Identities=33% Similarity=0.544 Sum_probs=265.6
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHc
Q 003117 438 RDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN 517 (846)
Q Consensus 438 ~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~ 517 (846)
+||+|.++..++.+++.++++|++|||.+|.||+||+.+++..+.|...++||+|+|++|+.++||||+|+|+||+++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999776554457899999999999999999999999999874
Q ss_pred ---CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHH
Q 003117 518 ---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLE 587 (846)
Q Consensus 518 ---~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~ 587 (846)
...|.|+||+|+|||+++++.||+|||+|+|+|+| |+|+|.++.++++.+|++++.|+|||+++++.+++
T Consensus 81 ~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il~ 160 (314)
T TIGR00443 81 LRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALLE 160 (314)
T ss_pred cccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHHH
Confidence 35799999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHH
Q 003117 588 ICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALD 667 (846)
Q Consensus 588 ~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~ 667 (846)
.|+++++.+..++..++++++..+++ +++..+++++.++.|..++.++|++.+++++++. +..+....++++
T Consensus 161 ~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~----~~~~~~~~~~l~ 232 (314)
T TIGR00443 161 EAGLPEEAREALREALARKDLVALEE----LLAELGLDPEVRERLLALPRLRGDGEEVLEEARA----LAGSETAEAALD 232 (314)
T ss_pred HcCCCHHHHHHHHHHHHhcCHHHHHH----HHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHH----hccCHHHHHHHH
Confidence 99999999999999999988766554 4456789998999999999999997788888764 233455678999
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCCCCccceeecchHHHHHHH
Q 003117 668 DLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTI 737 (846)
Q Consensus 668 ~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~~~ 737 (846)
+|++++++++.+|+...|.||++++|+++|||| ..+|++|||||+|++.|| ++.|||||++++|||..+
T Consensus 233 ~l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~~AvGfa~~~d~l~~~ 311 (314)
T TIGR00443 233 ELEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPGLGAPIAGGGRYDNLLGRFG-RPLPATGFALNLERLLEA 311 (314)
T ss_pred HHHHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECCCCCcccCCccHHHHHHHcC-CCCCCceEEecHHHHHHH
Confidence 999999999999988789999999999999999 237999999999999996 589999999999999877
Q ss_pred HH
Q 003117 738 ME 739 (846)
Q Consensus 738 L~ 739 (846)
+.
T Consensus 312 l~ 313 (314)
T TIGR00443 312 LT 313 (314)
T ss_pred hc
Confidence 53
No 21
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=5.1e-52 Score=456.25 Aligned_cols=290 Identities=43% Similarity=0.709 Sum_probs=249.6
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHH
Q 003117 436 GTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVA 515 (846)
Q Consensus 436 G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a 515 (846)
||+||+|++++.++++++.++++|++|||++|.||+|||.+++....++..+++|+|+|++|+.++||||+|+|+||+++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a 80 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVA 80 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999988766766778999999999999999999999999999
Q ss_pred Hc--CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHH-HcCCCceEEEEcchhhHHHH
Q 003117 516 MN--GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLN-ELDIGDYEIKLNHRLLLDGM 585 (846)
Q Consensus 516 ~~--~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~-~lgl~~~~i~Inh~~ll~~i 585 (846)
++ ...|.|+||+|+|||+++++.|++|||+|+|+|++ |+|+|.++.++++ .+|++++.|+|||+++++.+
T Consensus 81 ~~~~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~~~~i~i~h~~i~~~i 160 (311)
T PF13393_consen 81 RNLNLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLENFTIRINHTGILDAI 160 (311)
T ss_dssp HCCGSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEHHHHHHH
T ss_pred HhcCcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCchhhHHH
Confidence 97 46799999999999999999999999999999998 9999999999997 99999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHH
Q 003117 586 LEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLA 665 (846)
Q Consensus 586 l~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~a 665 (846)
++.||++++.++.+++.+++++.. ++ +++..+.+++++..+.|..|+.+.|++ +.+.++.. .+..++...++
T Consensus 161 l~~~gl~~~~~~~l~~~l~~~~~~---~~-~~~~~~~~l~~~~~~~l~~l~~~~g~~-~~l~~~~~---~~~~~~~~~~~ 232 (311)
T PF13393_consen 161 LEHLGLPEDLRRELLEALDKKDLS---EL-KELLSELGLSSESLEILDKLPELEGDP-EALEELLE---SLPSSPALQEA 232 (311)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTHHH---HH-HHHHHHTTTTHHHHHHHHHHHHHHHSH-HHHHHHHH---HHTCSCHHHHH
T ss_pred HhhcCCChhhhhhhhhheeccccc---cc-hhhhcccccchhhhhhhhccccccchH-HHHHHHHH---HHhhhhhhHHH
Confidence 999999999999999999876543 33 345566789999999999998888887 44444432 23344456789
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCCCCccceeecchHHHH
Q 003117 666 LDDLEILFQALEKSK-CIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERV 734 (846)
Q Consensus 666 l~~L~~l~~~l~~~g-~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL 734 (846)
+++|+.+.++++.+| ...+|.|||+++|+++|||| ..+|++|||||+|++.|+ ++.|||||++++|||
T Consensus 233 ~~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~~~~ia~GGRYD~L~~~fg-~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 233 LEELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGRGSPIAGGGRYDNLLEQFG-KPIPAVGFAIGLDRL 311 (311)
T ss_dssp HHHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETTSSSESEEEEEETTHHHHTT-SS-EEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcCCCceEecccChhHHHHHhC-CCCceEEEEEEeccC
Confidence 999999999999999 67899999999999999999 237999999999999995 589999999999996
No 22
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.5e-49 Score=441.46 Aligned_cols=285 Identities=28% Similarity=0.463 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcCCCCeEeeCCCChHHHHHHHHHc-CCCCceE
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTVPFARYVAMN-GLTSFKR 524 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~-~~~plK~ 524 (846)
..+.+++.++++|++|||.+|.||+|||.+++..++|+. .++||+|.|++|+.++||||+|+|+||+++++ ...|.|+
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 456889999999999999999999999999997777765 46799999999999999999999999998874 5679999
Q ss_pred EEeeceeecCCCCCCCccceEecccccc--------cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHH
Q 003117 525 HQIAKVYRRDNPSKGRYREFYQCDFDIA--------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKF 596 (846)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~ 596 (846)
||+|+|||++ .||+|||+|+|+|++ |+|||.++.++|+.+|+++++|+|||+++++++++.++++++.+
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~il~~ll~~l~l~~~~~ 162 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPGDLEVRLGDVGLFAALVDALGLPPGWK 162 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHcCCCHHHH
Confidence 9999999987 689999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhChh--------------------------------------------------hHHHHHHHHHHH-----
Q 003117 597 RTICSSIDKLDKQ--------------------------------------------------SFEQIKKEMVEE----- 621 (846)
Q Consensus 597 ~~v~~~l~kl~k~--------------------------------------------------~~~~i~~eL~~~----- 621 (846)
..++..|+++++. .+.++.+++.+.
T Consensus 163 ~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~~~~~~ 242 (373)
T PRK12295 163 RRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRSPAEIARRLLEKAALAA 242 (373)
T ss_pred HHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhccccccccccHHHHHHHHHhhhcccc
Confidence 9999999887752 112222222221
Q ss_pred -cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccc-hHHHHHHHHHHHHHHHHhcCCC-ceEEEecCCCCCCccc
Q 003117 622 -KGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS-SAKLALDDLEILFQALEKSKCI-DKVVFDLSLARGLDYY 698 (846)
Q Consensus 622 -~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~-~~~~al~~L~~l~~~l~~~g~~-~~i~~Dlsl~rgl~YY 698 (846)
.+++.+.++.+..++.++|++.+++++++.. +..++ ...+++++|+.++++++.+|+. .++.|||+++||++||
T Consensus 243 ~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l---~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~YY 319 (373)
T PRK12295 243 AARLPAEALAVLERFLAISGPPDAALAALRAL---AADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLDYY 319 (373)
T ss_pred cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCccc
Confidence 1788888999999999999987788887642 11223 4678999999999999999986 6799999999999999
Q ss_pred cC---------C--CcccCCCccchhhhhhCC-CCccceeecchHHHHHHH
Q 003117 699 TG---------V--GSIAAGGRYDNLIGMFGT-KQVPAVGVSLGIERVFTI 737 (846)
Q Consensus 699 tG---------~--g~ia~GGRYD~Li~~fg~-~~~pAVGfsigleRL~~~ 737 (846)
|| . ++||+|||||+|++.||+ ++.|||||++++|||+++
T Consensus 320 TGiVFe~~~~~~~~~~I~~GGRYD~Li~~fg~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 320 TGFVFEIRAAGNGDPPLAGGGRYDGLLTRLGAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred cceEEEEEECCCCCCcccCCcCHHHHHHHhCCCCCCCeeEEEEcHHHHHhh
Confidence 99 2 379999999999999974 789999999999998653
No 23
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=1.3e-44 Score=387.87 Aligned_cols=236 Identities=45% Similarity=0.701 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCC-CcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCC---C
Q 003117 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-DSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGL---T 520 (846)
Q Consensus 445 ~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~-~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~---~ 520 (846)
+..++++++.++++|++|||++|.||+||+.+++..+.++ ..+++|+|.|++|+.++||||+|+|++|+++++.. .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 5788999999999999999999999999999998764443 35789999999999999999999999999998643 7
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCCh
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPS 593 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~ 593 (846)
|+|+||+|+|||+|+++.||+|||+|+|+|++ |+|+|.++.++++.+|++++.|+|||+++++++++.+++++
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~~~~~~~ 161 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGLLEDRE 161 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhhccCCCH
Confidence 99999999999999998999999999999998 89999999999999999999999999999999999888775
Q ss_pred HHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q 003117 594 EKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILF 673 (846)
Q Consensus 594 ~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~ 673 (846)
+....+.+.++ + .++++|+.++
T Consensus 162 ~~~~~l~~~l~-------------------------------------------~---------------~~l~~l~~l~ 183 (261)
T cd00773 162 EYIERLIDKLD-------------------------------------------K---------------EALAHLEKLL 183 (261)
T ss_pred HHHHHHHHHhh-------------------------------------------H---------------HHHHHHHHHH
Confidence 43222111000 0 3678888999
Q ss_pred HHHHhcCCCceEEEecCCCCCCccccC---------C---CcccCCCccchhhhhhCCCCccceeecchHHHHHHHH
Q 003117 674 QALEKSKCIDKVVFDLSLARGLDYYTG---------V---GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIM 738 (846)
Q Consensus 674 ~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~---g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~~~L 738 (846)
++++.+|+..+|.|||+++|+++|||| . .+|++|||||+|++.|++++.|||||++++|||+.++
T Consensus 184 ~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfa~~~d~l~~~~ 260 (261)
T cd00773 184 DYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLAL 260 (261)
T ss_pred HHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCeEEEEEcHHHHHHhh
Confidence 999999987789999999999999999 2 3699999999999998767899999999999998765
No 24
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=386.52 Aligned_cols=261 Identities=20% Similarity=0.311 Sum_probs=207.9
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHH
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
.++|+|++|++|.++..++++++.++++|++|||.+|.||+||+.+++.. ...++||+|.|++|+.++||||+|+|+
T Consensus 5 ~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~---~~~~~~y~~~D~~g~~l~LRpD~T~~i 81 (281)
T PRK12293 5 HEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI---ADEKELIRFSDEKNHQISLRADSTLDV 81 (281)
T ss_pred CCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc---cchhceEEEECCCCCEEEECCcCCHHH
Confidence 68899999999999999999999999999999999999999999998732 335789999999999999999999999
Q ss_pred HHHHHHc---CCCCceEEEeeceeecCCCCCCCccceEecccccc----cHHHHHHHHHHHHHcCCCceEEEEcchhhHH
Q 003117 511 ARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----DFEVVKILTELLNELDIGDYEIKLNHRLLLD 583 (846)
Q Consensus 511 aR~~a~~---~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~ 583 (846)
||+++++ ...|+|+||+|+|||+++ |||+|+|+|++ .+|+|.++.++|+.+|++ +.|+|||+++++
T Consensus 82 aR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~lgl~-~~i~ig~~~i~~ 154 (281)
T PRK12293 82 VRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEELELE-PILQISNIKIPK 154 (281)
T ss_pred HHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHcCCC-CEEEECCHHHHH
Confidence 9999875 246899999999999863 89999999999 789999999999999996 689999999999
Q ss_pred HHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHH
Q 003117 584 GMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAK 663 (846)
Q Consensus 584 ~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~ 663 (846)
++++.++++.+++... ..++ +.+ +..+.+.+++...| + +.++++... . + .
T Consensus 155 ~~l~~~~~~~~~~~~~----------~~~~----~~~------~~~~~l~~l~~~~~-~-~~~~~~~~~----~-~---~ 204 (281)
T PRK12293 155 LVAEILGLDIEVFKKG----------QIEK----LLA------QNVPWLNKLVRIKT-L-EDLDEVIEL----V-P---D 204 (281)
T ss_pred HHHHHcCCCHHHHhHH----------HHHH----HHH------HhHHHHHHHHhcCC-H-HHHHHHHhh----C-C---H
Confidence 9999999987654221 1111 111 11234445544433 2 223333211 1 1 2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------CC-cccCCCccchhhhhhCCCCccceeecchHHHHH
Q 003117 664 LALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------VG-SIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVF 735 (846)
Q Consensus 664 ~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~g-~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~ 735 (846)
...++|+.+.+.++.++.. .+.|||+++||++|||| .+ +|++|||||. .+.||||||+++|||+
T Consensus 205 ~~~~~l~~l~~~l~~l~~~-~~~~Dl~~vrgl~YYTGivFe~~~~~~~i~~GGRYD~-------~~~PAvGfa~~ld~l~ 276 (281)
T PRK12293 205 EIKEELEKLKELAESIKYE-NLVIAPLYYAKMRYYDDLFFRFFDGNSTLASGGNYEI-------DGISSSGFALYTDNLI 276 (281)
T ss_pred HHHHHHHHHHHHHHHcCCC-cEEEccccccCCCCccceEEEEEECCceeccccCCCC-------CCCCcceEEeeHHHHH
Confidence 3445566666666666654 49999999999999999 23 6999999993 3689999999999998
Q ss_pred HHHH
Q 003117 736 TIME 739 (846)
Q Consensus 736 ~~L~ 739 (846)
.+|.
T Consensus 277 ~~l~ 280 (281)
T PRK12293 277 EILL 280 (281)
T ss_pred HHhh
Confidence 8764
No 25
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=376.61 Aligned_cols=359 Identities=26% Similarity=0.364 Sum_probs=291.6
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcCCCCeEeeCCCChH
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
+.++|.|++|.+|.++..++.+++.+.+.|.+|||+.|.||++||+|++....|+. .+++|+|.|+.|+.++||||+|+
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~ 81 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTI 81 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccH
Confidence 47899999999999999999999999999999999999999999999998766665 47899999999999999999999
Q ss_pred HHHHHHHHcC-CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcchh
Q 003117 509 PFARYVAMNG-LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNHRL 580 (846)
Q Consensus 509 ~iaR~~a~~~-~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh~~ 580 (846)
|++|.+++.. ..|.|+||.|+|||..+...|+..||+|.|+|++ |+|||.++..+++.+|+.++.+.|||.+
T Consensus 82 pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~~~~l~LG~~g 161 (390)
T COG3705 82 PVARIHATLLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLADLKLELGHAG 161 (390)
T ss_pred HHHHHHHHhcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCcCeEEEeccHH
Confidence 9999999753 3799999999999987556788889999999997 9999999999999999999999999999
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccc
Q 003117 581 LLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENS 660 (846)
Q Consensus 581 ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~ 660 (846)
++++++..++++...+..+...+.+++....+. +....+++++..+.+..++.++|.+ +++.++.. .....
T Consensus 162 if~all~~~~l~~~~~~~L~~a~~~k~~~~~~~----~~~~~~~~~~~~~~l~~l~~l~gg~-e~l~~~~~----~l~~~ 232 (390)
T COG3705 162 IFRALLAAAGLPGGWRARLRRAFGDKDLLGLEL----LVLAAPLSPELRGRLSELLALLGGR-EVLERARG----LLDEL 232 (390)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHhccchhhHHH----HhhccCCChhhhHHHHHHHHHhCCH-HHHHHHHH----hhhhh
Confidence 999999999999988889999998877554433 3334577888888999999999998 65665543 11121
Q ss_pred hH-HHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCCCCccceeecc
Q 003117 661 SA-KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSL 729 (846)
Q Consensus 661 ~~-~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~~~~pAVGfsi 729 (846)
.. ..++++++.+.++...++ .++.+|++++++.+|||| ..++++|||||++.+.|+. +.|++||++
T Consensus 233 ~~~~~al~~~~~l~di~~~~~--e~i~lDLg~l~~~~YyTg~~F~ay~~~~~~al~~GGRYd~l~~~f~~-~~patGf~~ 309 (390)
T COG3705 233 MAQGIALNEGRALADIARRLI--EKIALDLGRLRHFDYYTGLVFLAYADGLGDALASGGRYDGLLGLFGR-AAPATGFAL 309 (390)
T ss_pred hhhhhhhhhhhhHHHHHhccc--hhheehhhcccccchhhceeeeeeeccccchhhcccchhhhhhhcCc-cccchhhHh
Confidence 12 557788888888888744 479999999999999999 2379999999999999986 579999999
Q ss_pred hHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEE
Q 003117 730 GIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIV 808 (846)
Q Consensus 730 gleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviI 808 (846)
.++.|...... ....+.++.+....+ .-..+.+++++++.+|=.+.+.... ..-+.+...++.+.+++
T Consensus 310 ~l~~l~~~~~~--------~~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~---g~~~~~~~~~~~~~~~~ 378 (390)
T COG3705 310 RLDALAQGGLP--------LEERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLT---GLGASEEIPGVGFSLWL 378 (390)
T ss_pred hHHHHHhcCCC--------cccchhhhccCccchhhHHHHHHHHHHhcccCCeEEEeccc---ccchHhhhcccceeEee
Confidence 99999762111 112345566655544 3478899999999665444333322 12245556777777777
Q ss_pred cCc
Q 003117 809 GER 811 (846)
Q Consensus 809 g~~ 811 (846)
...
T Consensus 379 ~~~ 381 (390)
T COG3705 379 DRG 381 (390)
T ss_pred ccc
Confidence 644
No 26
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=4.7e-41 Score=397.46 Aligned_cols=331 Identities=18% Similarity=0.215 Sum_probs=270.6
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
.++|++||+|.++.+++.|++.++++|.++||.+|.||+|++.++|.. +|+. .++||+|.|++|+.++|||+.|++
T Consensus 188 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~ 266 (563)
T TIGR00418 188 IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDNREFMLKPMNCPG 266 (563)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCCceEEEecCCCHH
Confidence 479999999999999999999999999999999999999999999976 4654 478999999999999999999999
Q ss_pred HHHHHHHcC----CCCceEEEeeceeecCCCC----CCCccceEecccccc------cHH---HHHHHHHHHHHcCCCce
Q 003117 510 FARYVAMNG----LTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIA------DFE---VVKILTELLNELDIGDY 572 (846)
Q Consensus 510 iaR~~a~~~----~~plK~y~ig~VfR~e~p~----~Gr~REf~Q~g~ei~------DaE---vI~l~~eil~~lgl~~~ 572 (846)
++|.++.+. .+|+|+||+|+|||+|..+ .+|.|||+|.|+|+| ++| ++.++.++++.||++.+
T Consensus 267 i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~ 346 (563)
T TIGR00418 267 HFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFD 346 (563)
T ss_pred HHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999753 4699999999999999543 249999999999998 556 99999999999999888
Q ss_pred EEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 003117 573 EIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQE 652 (846)
Q Consensus 573 ~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~ 652 (846)
.+.+|....- ++++- + ..|.+
T Consensus 347 ~~~l~~~~~~----~~~~~--~--------------~~~~~--------------------------------------- 367 (563)
T TIGR00418 347 KYELSTRDPE----DFIGE--D--------------ELWEK--------------------------------------- 367 (563)
T ss_pred EEEEeCCChh----hhcCC--H--------------HHHHH---------------------------------------
Confidence 8988853110 00000 0 00100
Q ss_pred cccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC--------CC----------cccCCCccchh-
Q 003117 653 GSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG--------VG----------SIAAGGRYDNL- 713 (846)
Q Consensus 653 ~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG--------~g----------~ia~GGRYD~L- 713 (846)
+...+.+.|+.+|+ ++.+|+. ||++||+. .| .+++|||||.+
T Consensus 368 ---------------~~~~~~~~l~~~~i--~~~~~~~--~g~~y~~~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~ 428 (563)
T TIGR00418 368 ---------------AEAALEEALKELGV--PYEIDPG--RGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDLTY 428 (563)
T ss_pred ---------------HHHHHHHHHHhCCC--ceEEcCC--CcceecceEEEEeecCCCCceeeceeeeccCCHhhcCCEE
Confidence 11112223344454 4667776 78888876 01 27889999995
Q ss_pred hhhhCCCCccce---eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CC
Q 003117 714 IGMFGTKQVPAV---GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HK 788 (846)
Q Consensus 714 i~~fg~~~~pAV---GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~ 788 (846)
+...|++..|++ ||++|+|||+.+|.++.....+.|. +|.||+|++.++ ...++.++++.||++|++|+++. +.
T Consensus 429 ~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~-~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~ 507 (563)
T TIGR00418 429 VDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWL-APVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDRNE 507 (563)
T ss_pred ECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcC-CCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 788888788975 9999999999998765322222343 688999999987 67899999999999999999998 45
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHH
Q 003117 789 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 843 (846)
Q Consensus 789 ~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 843 (846)
++++++++|++.|+|++|+||++|+++|+|+||++.++++..+++++++++++++
T Consensus 508 sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~~ 562 (563)
T TIGR00418 508 RLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRKE 562 (563)
T ss_pred CHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999988764
No 27
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-41 Score=401.43 Aligned_cols=352 Identities=21% Similarity=0.270 Sum_probs=272.9
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCCh
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT 507 (846)
.+.++|++||+|.++.+++.+++.++++|++|||.+|.||+||+.++|.. +|++ .++||+|.|++|+.++|||+.|
T Consensus 256 ~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~~~~~LRP~~~ 334 (638)
T PRK00413 256 QEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDGEEYALKPMNC 334 (638)
T ss_pred cCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCCcEEEEecCCc
Confidence 46679999999999999999999999999999999999999999999976 4652 4789999999999999999999
Q ss_pred HHHHHHHHHc----CCCCceEEEeeceeecCCCC--C--CCccceEecccccc--------c-HHHHHHHHHHHHHcCCC
Q 003117 508 VPFARYVAMN----GLTSFKRHQIAKVYRRDNPS--K--GRYREFYQCDFDIA--------D-FEVVKILTELLNELDIG 570 (846)
Q Consensus 508 ~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~--~--Gr~REf~Q~g~ei~--------D-aEvI~l~~eil~~lgl~ 570 (846)
++++|+++++ ..+|+|+||+|+|||+|+|+ . +|.|||+|+|+|+| | +|+|.++.++++.||++
T Consensus 335 ~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~ 414 (638)
T PRK00413 335 PGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE 414 (638)
T ss_pred HHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999975 25699999999999999986 2 49999999999998 4 88999999999999999
Q ss_pred ceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003117 571 DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLR 650 (846)
Q Consensus 571 ~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~ 650 (846)
++.+++||+ .. ..+|.++ .+... .+.+++. +...|++.+..+... .++|+.
T Consensus 415 ~~~i~l~~r-~~----~~~g~~~-~~~~~-----------~~~l~~~-l~~~g~~~~~~~~~~---~~~~~~-------- 465 (638)
T PRK00413 415 DYEVKLSTR-PE----KRIGSDE-MWDKA-----------EAALKEA-LDELGLDYEIAPGEG---AFYGPK-------- 465 (638)
T ss_pred eEEEEEecC-Cc----ccCCCHH-HHHHH-----------HHHHHHH-HHHcCCCceecCCcc---ccccce--------
Confidence 999999998 22 2455443 22111 1112222 222344322111100 011110
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCc-cccCCCcccCCCccchhhhhhCCCCccce---e
Q 003117 651 QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV---G 726 (846)
Q Consensus 651 ~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~-YYtG~g~ia~GGRYD~Li~~fg~~~~pAV---G 726 (846)
+. .....++.++.+ ..++++|+++.++++ ||||. .|+ ...|++ |
T Consensus 466 -----~~--~~~~~~~~~~~~----------l~~~~~d~~~~~~~dl~Yt~~----~~~-----------~~~p~~i~~~ 513 (638)
T PRK00413 466 -----ID--FQLKDALGREWQ----------CGTIQLDFNLPERFDLTYVGE----DGE-----------KHRPVMIHRA 513 (638)
T ss_pred -----EE--EEeecCCCCeEE----------eccEeecccChhhcCCEEECC----CCC-----------ccCcEEEEec
Confidence 00 000011111111 136889999999999 89983 122 235777 6
Q ss_pred ecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCE
Q 003117 727 VSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPW 804 (846)
Q Consensus 727 fsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~ 804 (846)
+..++||++.+|.++..+..+.|. +|.||+|++.++ ...++.++++.||++||+|++++ +.++++++++|++.|+||
T Consensus 514 ~~g~~eRli~~l~e~~~~~~p~~~-~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~ 592 (638)
T PRK00413 514 ILGSMERFIGILIEHYAGAFPTWL-APVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPY 592 (638)
T ss_pred ceehHHHHHHHHHHHcCCCCCccc-CcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCE
Confidence 777999999999775433223343 688999999987 67889999999999999999998 467999999999999999
Q ss_pred EEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 805 MVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 805 iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+|+||++|+++++|+||++.++++..++++++++.+++.++
T Consensus 593 ~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~ 633 (638)
T PRK00413 593 MLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIA 633 (638)
T ss_pred EEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765
No 28
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-39 Score=383.24 Aligned_cols=447 Identities=26% Similarity=0.378 Sum_probs=324.8
Q ss_pred hcCchhHHHHHHHH----------HHhccCCcch-H---------HHHHHHhhhccCCCCcchHHHHHHHHHHhhccccc
Q 003117 369 VLGKGTGVIVQLIK----------DRLQSKSLGI-L---------EKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESR 428 (846)
Q Consensus 369 ~~~~~~~~~~~~~~----------~~~~~~~~~~-~---------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 428 (846)
..++...+|..|++ |||+|+.+|. + ....+......++.++.+++-...+++...+....
T Consensus 843 ~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llppe~~el~~~~~h~~~~~~~k~~~~~~~~~~~q~~~~~~n~~yd~~~~ 922 (1351)
T KOG1035|consen 843 EHPEEASLIRWLLSHDPSKRPTATELLNSELLPPEESELLVFLQHLYIEQLGKAYKNLLQLIFEQEVLEVLNHQYDLDRL 922 (1351)
T ss_pred cchHHHHHHHHHhcCCCccCCCHHHHhhccCCCccchHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhhhccccccccc
Confidence 45677889999998 9999999994 1 22333334456677777766666555333321110
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChH
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
-.+++.+....+++.+.+.+.++|++||+.++.||.+-+... ......+.+.|+|++|.+++|++|++.
T Consensus 923 -------~~~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~----~~~~~~~~v~~ld~sG~~v~Lp~DLr~ 991 (1351)
T KOG1035|consen 923 -------SYIQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA----CAYFSRKAVELLDHSGDVVELPYDLRL 991 (1351)
T ss_pred -------cccccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc----cchhccceeeeecCCCCEEEeeccccc
Confidence 245677888899999999999999999999999995544331 111235689999999999999999999
Q ss_pred HHHHHHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHH-cCCCceEEEEcchh
Q 003117 509 PFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNE-LDIGDYEIKLNHRL 580 (846)
Q Consensus 509 ~iaR~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~-lgl~~~~i~Inh~~ 580 (846)
|||||+++|....+|+|+|++|||.+. .. +|+|++||+|||+ |||+|++++||+.. |.-+++.|++||.+
T Consensus 992 pfar~vs~N~~~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n~~i~lnH~~ 1069 (1351)
T KOG1035|consen 992 PFARYVSRNSVLSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGNCDIHLNHAD 1069 (1351)
T ss_pred hHHHHhhhchHHHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCceeEEeChHH
Confidence 999999999999999999999999766 44 9999999999998 99999999999886 44468999999999
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhhhhC--hhhHHHHHHHHHHHcCCCHHHHHHHHHHH-----HhcCChHHHHHHHHhhc
Q 003117 581 LLDGMLEICGVPSEKFRTICSSIDKLD--KQSFEQIKKEMVEEKGLSVETADRIGTFV-----KERGSPLVLLSKLRQEG 653 (846)
Q Consensus 581 ll~~il~~~gi~~~~~~~v~~~l~kl~--k~~~~~i~~eL~~~~gl~~~~~~~L~~l~-----~~~g~~~~~l~~l~~~~ 653 (846)
++++++.+||+|+++++.|.+.+.... +..-.+ ++...-....+......|..++ ...|.+ ..++.+++.
T Consensus 1070 LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~-~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~-~~l~~~~~~- 1146 (1351)
T KOG1035|consen 1070 LLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRSE-KELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRF-QALKLIRGK- 1146 (1351)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHHH-HHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcch-hhhHHHhhh-
Confidence 999999999999999999988775432 111111 1111000111122222232222 233444 445555431
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------------CC---cccCCCccchhhh
Q 003117 654 SLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------------VG---SIAAGGRYDNLIG 715 (846)
Q Consensus 654 ~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------------~g---~ia~GGRYD~Li~ 715 (846)
......++ ++++|+.++.++..+|+...+.|+.++. .+||.+ .+ .+++|||||.++.
T Consensus 1147 --~~~~~~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~--~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~ 1221 (1351)
T KOG1035|consen 1147 --LRADSLVR-ALKELENVVGLLRSLGIEEHVHIYVGPT--ESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQ 1221 (1351)
T ss_pred --hhhhHHHH-HHHHHHHHHHHHHHhccccceEEeeccc--eeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHH
Confidence 22223345 9999999999999999998999998855 445544 11 5899999999999
Q ss_pred hhCCCC---c-cceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC--C
Q 003117 716 MFGTKQ---V-PAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--K 788 (846)
Q Consensus 716 ~fg~~~---~-pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~ 788 (846)
+|+..+ . +|+|++.-....-.+.+ +-.+.|.+..|||+||+.+. ....+++|+++||+.||+|++.++ +
T Consensus 1222 ~~~~~~~~~~p~a~gv~~~~~~~~~~~~----~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~ 1297 (1351)
T KOG1035|consen 1222 EVRDEQKMNLPGAIGVSALSTIRQHAPK----DLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSP 1297 (1351)
T ss_pred HhhhhhhhcCcccceehhhHHHHHhhhc----cccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCc
Confidence 987522 2 37776522221111211 22345777889999999997 789999999999999999999985 4
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEE--CCCCceeeechHHHHHHHHHHhh
Q 003117 789 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKN--IDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 789 ~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~--l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+.+++.+||++.-|.+++++- .+..+||. ++...+..+-+.||++++.+.++
T Consensus 1298 ~~~e~~e~~~~~~i~~iliv~-----n~~~~vks~~~e~~se~~~~~~elv~f~~~~~~ 1351 (1351)
T KOG1035|consen 1298 SLEELTEYANEHEITCILIVT-----NQKEKVKSFELERKSEKVVGRTELVEFLLQALR 1351 (1351)
T ss_pred chHHHHHHHhcCceEEEEEEe-----cceeeechhHHhhhhhhhhhHHHHHHHHHHhhC
Confidence 588999999887777777765 35566665 45567888999999999987764
No 29
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-39 Score=383.15 Aligned_cols=350 Identities=21% Similarity=0.287 Sum_probs=264.4
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChH
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
..++|++||+|.++.+++.+++.++++|+++||.+|.||+|++.++|.. +|++ .++||+|.|.+|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 5689999999999999999999999999999999999999999999976 5663 47899999999999999999999
Q ss_pred HHHHHHHHc----CCCCceEEEeeceeecCCCC----CCCccceEecccccc-------c--HHHHHHHHHHHHHcCCCc
Q 003117 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIA-------D--FEVVKILTELLNELDIGD 571 (846)
Q Consensus 509 ~iaR~~a~~----~~~plK~y~ig~VfR~e~p~----~Gr~REf~Q~g~ei~-------D--aEvI~l~~eil~~lgl~~ 571 (846)
+++|+++.+ ..+|+|+||+|+|||+|+++ .+|.|||+|+|+|+| | +|++.++.++++.||+++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~ 351 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKD 351 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 999999864 25799999999999999884 359999999999998 4 899999999999999988
Q ss_pred eEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 003117 572 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 651 (846)
Q Consensus 572 ~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~ 651 (846)
+.+.+|++.+ + .++|.++ .+.. ..+++ .+.++..|++... ++
T Consensus 352 ~~i~l~~r~~-~---~~~g~~~-~~~~-----------~~~~l-~~~l~~~g~~~~~------------~~--------- 393 (575)
T PRK12305 352 YYLELSTREP-E---KYVGDDE-VWEK-----------ATEAL-REALEELGLEYVE------------DP--------- 393 (575)
T ss_pred EEEEEeCCCh-h---hccCCHH-HHHH-----------HHHHH-HHHHHhcCCCcEe------------cC---------
Confidence 9999999865 2 2233221 1100 01111 1111222332110 00
Q ss_pred hcccccccc---hHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccCCCcccCCCccch-hhhhhCCCCccce--
Q 003117 652 EGSLFLENS---SAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDN-LIGMFGTKQVPAV-- 725 (846)
Q Consensus 652 ~~~~~~~~~---~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~-Li~~fg~~~~pAV-- 725 (846)
....++... ....++.+..+ + .++++|+. .++|||- +....|++..|++
T Consensus 394 ~~~~~y~~~~~~~~~d~~g~~~~-------~---~t~~~~~~---------------~~~~fdl~y~~~~~~~~~p~~ih 448 (575)
T PRK12305 394 GGAAFYGPKIDVQIKDALGREWQ-------M---STIQLDFN---------------LPERFDLEYTAEDGKRQRPVMIH 448 (575)
T ss_pred CCcccccccEEEEeeccCCCcee-------c---cceeeecc---------------cHhhCCCEEECCCCCccCceEEE
Confidence 000111100 00000000000 0 12333322 3466663 4444455567877
Q ss_pred -eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCC
Q 003117 726 -GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKI 802 (846)
Q Consensus 726 -GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi 802 (846)
|+..++||++.+|.++..+..+.| .+|.||+|+++++ ...++.++++.||++||+|++++. .++++++++|++.|+
T Consensus 449 ~~~~G~~eRl~~~l~e~~~~~~p~~-~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~ 527 (575)
T PRK12305 449 RALFGSIERFIGILTEHYAGAFPFW-LAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKI 527 (575)
T ss_pred ccccccHHHHHHHHHHHhCCCCCCC-CCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCC
Confidence 777799999999987643333445 3688999999987 678999999999999999999984 579999999999999
Q ss_pred CEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhhC
Q 003117 803 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846 (846)
Q Consensus 803 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 846 (846)
||+||||++|+++++|+||++.++++..++++++++.|++.+++
T Consensus 528 p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 528 PYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred CEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887753
No 30
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-38 Score=377.68 Aligned_cols=329 Identities=20% Similarity=0.263 Sum_probs=268.6
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChH
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
+..+|++||+|.++.+++.|++.+++.+.++||.+|.||+|++.++|.. +|+. .++|| +.|.+|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 4578999999999999999999999999999999999999999999976 5764 47899 88999999999999999
Q ss_pred HHHHHHHHc----CCCCceEEEeeceeecCCCCC--C--CccceEecccccc------cHH---HHHHHHHHHHHcCCCc
Q 003117 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPSK--G--RYREFYQCDFDIA------DFE---VVKILTELLNELDIGD 571 (846)
Q Consensus 509 ~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~--G--r~REf~Q~g~ei~------DaE---vI~l~~eil~~lgl~~ 571 (846)
+++|++... +.+|+|+|++|+|||+|+++. | |.|||+|.|+|+| ++| ++.++.++++.||+ +
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl-~ 417 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGF-E 417 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCC-c
Confidence 999999653 357999999999999999753 6 9999999999998 455 88899999999999 6
Q ss_pred eEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 003117 572 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 651 (846)
Q Consensus 572 ~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~ 651 (846)
+.+.++++. -..+|-+ ..|.... +.
T Consensus 418 ~~~~~~~r~-----~~~~G~~----------------e~~~~~~--------------~~-------------------- 442 (639)
T PRK12444 418 YEVELSTRP-----EDSMGDD----------------ELWEQAE--------------AS-------------------- 442 (639)
T ss_pred EEEEEECCc-----cccCCCH----------------HHHHHHH--------------HH--------------------
Confidence 999888762 0112210 1222210 00
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccch-------
Q 003117 652 EGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDN------- 712 (846)
Q Consensus 652 ~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~------- 712 (846)
+.+.|+..|+ ++.+|++ +|. || | ....++|||||.
T Consensus 443 --------------------l~~~l~~~~~--~y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~ 496 (639)
T PRK12444 443 --------------------LENVLQSLNY--KYRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKFD 496 (639)
T ss_pred --------------------HHHHHHHcCC--CceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeecccccccc
Confidence 1111222333 3556665 666 66 5 226889999999
Q ss_pred --hhhhhCCCCcccee---ecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC--cHHHHHHHHHHHHHCCCeEEEE
Q 003117 713 --LIGMFGTKQVPAVG---VSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD--KLPLAAELVSELWNAKVKAEYM 785 (846)
Q Consensus 713 --Li~~fg~~~~pAVG---fsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~--~~~~a~~la~~Lr~~GI~ael~ 785 (846)
++...|++..|++| +..++||++.+|.++.....+.|. +|.||+|++.++ ....+.++++.||++||+|+++
T Consensus 497 l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~-ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid 575 (639)
T PRK12444 497 LNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWL-APVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERD 575 (639)
T ss_pred eEEECCCCCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCcc-CCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 66666777899999 778999999999775432223443 689999999986 5688999999999999999999
Q ss_pred c-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 786 V-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 786 ~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
. +.++++++++|++.|+||+++||++|+++++|+||++.++++..++++++++.|+++++
T Consensus 576 ~~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 576 ERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 8 46899999999999999999999999999999999999999999999999999988765
No 31
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.3e-37 Score=355.47 Aligned_cols=384 Identities=17% Similarity=0.207 Sum_probs=279.4
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCC
Q 003117 391 GILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTP 470 (846)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP 470 (846)
|..+...+=+..+..-...+|.++-..+. +. .+....++|+++|+|.++.+++.+++.+++.++++||++|.||
T Consensus 120 ~~~~~l~~~~~~~eea~~rdHr~lg~~l~-lf-----~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP 193 (545)
T PRK14799 120 ETEEQLKDYLTWLEKAEETDHRLIGEKLD-LF-----SFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTS 193 (545)
T ss_pred CCHHHHHHHHHHHHhcccCCHHHHHHHcC-Cc-----ccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECC
Confidence 33344444444444445555666543321 00 1223568999999999999999999999999999999999999
Q ss_pred ccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHHHHHHHHc----CCCCceEEEeeceeecCCCCC----C
Q 003117 471 VFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSK----G 539 (846)
Q Consensus 471 ~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~----G 539 (846)
.++..++|.. +|++ .++||.+ |.+|+.++|||+.|++++|+++.+ +.+|+|+|++|+|||+|.++. +
T Consensus 194 ~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~ 271 (545)
T PRK14799 194 HVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLL 271 (545)
T ss_pred ccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccc
Confidence 9999999866 7876 3689988 888999999999999999999864 368999999999999999875 7
Q ss_pred CccceEecccccc--------cH-HHHHHHHHHHHHcCCC--ceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhCh
Q 003117 540 RYREFYQCDFDIA--------DF-EVVKILTELLNELDIG--DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDK 608 (846)
Q Consensus 540 r~REf~Q~g~ei~--------Da-EvI~l~~eil~~lgl~--~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k 608 (846)
|.|||+|+|+||| |+ |++.++.++++.||++ ++.+.++++. .+.+|.++ .+...
T Consensus 272 RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rp-----e~~~G~~~-~wdka--------- 336 (545)
T PRK14799 272 RVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRP-----DESIGSDE-LWEKA--------- 336 (545)
T ss_pred cceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcCh-----hhhcCCHH-HHHHH---------
Confidence 9999999999999 33 7899999999999995 5999999986 34455432 11111
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEe
Q 003117 609 QSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFD 688 (846)
Q Consensus 609 ~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~D 688 (846)
. +.+ .+.++..|++....+.... +.|+.. +.....++.+..++. ++++|
T Consensus 337 -~-~~l-~~~L~~~gl~~~~~~g~ga---fygpki---------------D~~v~dalgr~~q~~----------Tiqld 385 (545)
T PRK14799 337 -T-NAL-ISALQESGLKFGIKEKEGA---FYGPKI---------------DFEIRDSLGRWWQLS----------TIQVD 385 (545)
T ss_pred -H-HHH-HHHHHHcCCCeEEecceec---cccCcc---------------ceEehhhcCchhhhh----------hhhhh
Confidence 0 111 2233445555433222111 122110 001122333333322 34556
Q ss_pred cCCCCC--CccccCCCcccCCCccchhhhhhCCCCcc---ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC
Q 003117 689 LSLARG--LDYYTGVGSIAAGGRYDNLIGMFGTKQVP---AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD 763 (846)
Q Consensus 689 lsl~rg--l~YYtG~g~ia~GGRYD~Li~~fg~~~~p---AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~ 763 (846)
+.+.+. +.|... .| .+..| ..|+..|+||++.+|.++..+..+.|. +|.||+|++.++
T Consensus 386 f~lp~rf~Ley~~~------~~----------~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~wl-aP~qV~Iipi~e 448 (545)
T PRK14799 386 FNLPERFKLEYIDK------DG----------IKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWL-SSVQVRVLPITD 448 (545)
T ss_pred cCcccccceEEEcC------CC----------CCcccEEEEccCCCCHHHHHHHHHHHcCCCCCCCC-CCceEEEEEcCH
Confidence 655432 333221 11 11223 337888999999999775333334453 689999999987
Q ss_pred -cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 764 -KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 764 -~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
...++.++++.||++||+|+++. +.++++++++|++.|+|+++|||++|+++++|+||++.++++..++++++++.+.
T Consensus 449 ~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~ 528 (545)
T PRK14799 449 EVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLI 528 (545)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHH
Confidence 67899999999999999999998 4679999999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 003117 842 RRLN 845 (846)
Q Consensus 842 ~~l~ 845 (846)
++++
T Consensus 529 ~~i~ 532 (545)
T PRK14799 529 TEIA 532 (545)
T ss_pred HHHh
Confidence 7764
No 32
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-37 Score=362.15 Aligned_cols=404 Identities=20% Similarity=0.235 Sum_probs=282.8
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LR 503 (846)
++++.+.++|++||+|.+++++++|++.+++.|+++||++|.||.|++.++|.. +|++ .++||+|.|++|+.++||
T Consensus 29 ag~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~l~Lr 107 (565)
T PRK09194 29 AGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQE-SGRWEEYGPELLRLKDRHGRDFVLG 107 (565)
T ss_pred CCCccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhh-cCCccccchhceEEecCCCCEEEEC
Confidence 467889999999999999999999999999999999999999999999999965 5654 478999999999999999
Q ss_pred CCChHHHHHHHHH----cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cH---HHHHHHHHHHHH
Q 003117 504 YDLTVPFARYVAM----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DF---EVVKILTELLNE 566 (846)
Q Consensus 504 pDlT~~iaR~~a~----~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------Da---EvI~l~~eil~~ 566 (846)
|+.+.+++.++.. ++.+|+|+||++++||+| +|+.| |.|||+|+|+++| |+ +++.++.++|++
T Consensus 108 Pt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~ 187 (565)
T PRK09194 108 PTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDR 187 (565)
T ss_pred CCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9887777665553 357899999999999999 89999 9999999999998 44 455677999999
Q ss_pred cCCCceEEEEcchhhHHHHHH------------------hcCCChHHHHHHHHHh-----------hhhChhhHHHHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLE------------------ICGVPSEKFRTICSSI-----------DKLDKQSFEQIKKE 617 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~------------------~~gi~~~~~~~v~~~l-----------~kl~k~~~~~i~~e 617 (846)
||+ +|.+.++|++.+.+... .|+..... +++... ...+.+.... ..+
T Consensus 188 lgl-~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~--e~a~~~~~~~~~~~~~~~~v~~p~~~t-~~e 263 (565)
T PRK09194 188 LGL-DFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANI--EKAEALPPPRAAAEEALEKVDTPNAKT-IEE 263 (565)
T ss_pred hCC-ccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhh--hhhcccCCCCccccccceeecCCCCCc-HHH
Confidence 999 79999999988876443 23321110 000000 0000000000 012
Q ss_pred HHHHcCCCHHHHHHHHHHH----------HhcCChHHHHHHHHhhcccccccc-hHHHHHHHHHHHH----HHHHhcCCC
Q 003117 618 MVEEKGLSVETADRIGTFV----------KERGSPLVLLSKLRQEGSLFLENS-SAKLALDDLEILF----QALEKSKCI 682 (846)
Q Consensus 618 L~~~~gl~~~~~~~L~~l~----------~~~g~~~~~l~~l~~~~~~~~~~~-~~~~al~~L~~l~----~~l~~~g~~ 682 (846)
+....++++... .+.++ .++|+..--+.+++.. .... .....-+++..+. .++..+|..
T Consensus 264 ~a~~lg~~~~~~--~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~----lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~ 337 (565)
T PRK09194 264 LAEFLNVPAEKT--VKTLLVKADGELVAVLVRGDHELNEVKLENL----LGAAPLELATEEEIRAALGAVPGFLGPVGLP 337 (565)
T ss_pred HHHHhCCCHHHe--eEEEEEEeCCeEEEEEeecchhhhHHHHHhh----cCCcccccCCHHHHHHhhCCCCCccCcccCC
Confidence 222233332210 00110 1233321112223211 0000 0000112333322 233444432
Q ss_pred --ceEEEecCCCCCCccccC------------------------------------------------CC-cccCCCccc
Q 003117 683 --DKVVFDLSLARGLDYYTG------------------------------------------------VG-SIAAGGRYD 711 (846)
Q Consensus 683 --~~i~~Dlsl~rgl~YYtG------------------------------------------------~g-~ia~GGRYD 711 (846)
.++.+|.++....++|+| .| .+--|-+|.
T Consensus 338 ~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys 417 (565)
T PRK09194 338 KDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYS 417 (565)
T ss_pred CCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchh
Confidence 367888877665555543 01 234477777
Q ss_pred hhhh-hh----CCCCcccee-ecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEcC---C-cHHHHHHHHHHHHHC
Q 003117 712 NLIG-MF----GTKQVPAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNA 778 (846)
Q Consensus 712 ~Li~-~f----g~~~~pAVG-fsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~ 778 (846)
.-+. .| |.+..+-.| |+||++||+.++.+++.+. +..|++ +|+||+|++.+ + ....+.++++.||++
T Consensus 418 ~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~ 497 (565)
T PRK09194 418 EAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAA 497 (565)
T ss_pred hccCCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhcc
Confidence 6543 22 222233446 8999999999999875443 335665 78999999997 3 567899999999999
Q ss_pred CCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 779 KVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 779 GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
||+|++++ +.++++++++|+..|+||+|+||++|+++++|+||++.++++..|+++++++.+.
T Consensus 498 gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 498 GIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred CCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 99999998 4689999999999999999999999999999999999999999999999998875
No 33
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.9e-35 Score=345.71 Aligned_cols=421 Identities=20% Similarity=0.253 Sum_probs=286.3
Q ss_pred cCCCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccC
Q 003117 404 FDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG 483 (846)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g 483 (846)
.+|++.+-......++ ++++.+.++|+++|+|.+++++++|++.+++.|.++||++|.||.|+|.++|.. +|
T Consensus 13 ~~p~~~~~~s~~ll~r-------ag~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~-sg 84 (568)
T TIGR00409 13 ETPADAEVKSHQLLLR-------AGFIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE-SG 84 (568)
T ss_pred CCCcccchhhHHHHHh-------CCCccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhh-cC
Confidence 4677655444333333 578899999999999999999999999999999999999999999999999865 56
Q ss_pred CC---cCceEEEEcCCCCeEeeCCC----ChHHHHHHHHHcCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-
Q 003117 484 ED---SKLIYDLADQGGELCSLRYD----LTVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA- 552 (846)
Q Consensus 484 ~~---~~~~y~~~D~~G~~l~LRpD----lT~~iaR~~a~~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~- 552 (846)
++ .++||+|.|++|+.++|||+ +|..++|.+.+++.+|+|+||++++||+| +|+.| |.|||+|.|+++|
T Consensus 85 ~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~ 164 (568)
T TIGR00409 85 RWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH 164 (568)
T ss_pred CCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEe
Confidence 53 47899999999999999997 88888888888888999999999999999 89999 9999999999999
Q ss_pred ------cHHHH---HHHHHHHHHcCCCceEEEEcchhhHHHHHH------------------hcCCChHHHHHHHHHh--
Q 003117 553 ------DFEVV---KILTELLNELDIGDYEIKLNHRLLLDGMLE------------------ICGVPSEKFRTICSSI-- 603 (846)
Q Consensus 553 ------DaEvI---~l~~eil~~lgl~~~~i~Inh~~ll~~il~------------------~~gi~~~~~~~v~~~l-- 603 (846)
|+|.. .++.++|++||+ +|.+..++++.+.+-.. .|+-... .+.....
T Consensus 165 ~~~~~a~~e~~~~~~~y~~if~~LgL-~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an--~e~a~~~~~ 241 (568)
T TIGR00409 165 SDEESLDATYQKMYQAYSNIFSRLGL-DFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAAN--IELAEALAP 241 (568)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCC-cceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchh--hhhhcccCc
Confidence 45665 446899999999 78888888876654322 1111110 0000000
Q ss_pred -------------hhhChhhHHHHHHHHHHHcCCCHHHHHHHHHH-------------HHhcCChHHH-HHHHHhhc--c
Q 003117 604 -------------DKLDKQSFEQIKKEMVEEKGLSVETADRIGTF-------------VKERGSPLVL-LSKLRQEG--S 654 (846)
Q Consensus 604 -------------~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l-------------~~~~g~~~~~-l~~l~~~~--~ 654 (846)
...+..+. +++...+++++.. .++.+ +.++|+. ++ ..+++... .
T Consensus 242 ~~~~~~~~~~~~~~tp~~~ti----~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~v~v~~rgd~-~vn~~k~~~~~g~~ 314 (568)
T TIGR00409 242 GERNAPTAELDKVDTPNTKTI----AELVECFNLPAEK--VVKTLLVKAVDKSEPLVALLVRGDH-ELNEVKAPNLLLVA 314 (568)
T ss_pred cccccccccceeecCCCCCcH----HHHHHHhCCCHhH--eeeEEEEEecCCccceEEEEecCcc-hhhHHHHHHHhccC
Confidence 00001111 1222333333221 11111 0124443 21 11222110 0
Q ss_pred cccccchHHHHHHHHHHHHHHHHhcCCC--ceEEEecCCCCCCccccC--------------------------------
Q 003117 655 LFLENSSAKLALDDLEILFQALEKSKCI--DKVVFDLSLARGLDYYTG-------------------------------- 700 (846)
Q Consensus 655 ~~~~~~~~~~al~~L~~l~~~l~~~g~~--~~i~~Dlsl~rgl~YYtG-------------------------------- 700 (846)
.-.......+....+.....++...|+. .++.+|.++....+|-+|
T Consensus 315 ~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd 394 (568)
T TIGR00409 315 QVLELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGD 394 (568)
T ss_pred cccccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccC
Confidence 0000000001111111112333333332 245667654332222111
Q ss_pred ----------------CC-cccCCCccchhhhh-h---CCCCc-ccee-ecchHHHHHHHHHHhhhhh-hhcccc--Ccc
Q 003117 701 ----------------VG-SIAAGGRYDNLIGM-F---GTKQV-PAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TET 754 (846)
Q Consensus 701 ----------------~g-~ia~GGRYD~Li~~-f---g~~~~-pAVG-fsigleRL~~~L~~~~~~~-~~~~~~--~~~ 754 (846)
.| .+--|-||.+.+.- | .++.. +-.| ++||++|++.++.+++.+. +..||+ +|+
T Consensus 395 ~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~ 474 (568)
T TIGR00409 395 PSPDGQGTLKIARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPY 474 (568)
T ss_pred CCCCCCCcccccceEEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCe
Confidence 12 34457888876542 2 22222 3445 7899999999998876543 456776 899
Q ss_pred eEEEEEcCC----cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCcee
Q 003117 755 QVLVGLLGD----KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 829 (846)
Q Consensus 755 dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~ 829 (846)
+|.|++... ....+.++.+.|.++|++|.+|+. .+++++++.|+..|+||.|+||++++++++|+|+++.++++.
T Consensus 475 qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~ 554 (568)
T TIGR00409 475 DVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQ 554 (568)
T ss_pred EEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceE
Confidence 999999863 346788899999999999999984 589999999999999999999999999999999999999999
Q ss_pred eechHHHHHHHHH
Q 003117 830 VISRSNFVEEIQR 842 (846)
Q Consensus 830 ~v~~~elv~~L~~ 842 (846)
.|+.+++++.+.+
T Consensus 555 ~v~~~~l~~~i~~ 567 (568)
T TIGR00409 555 LIKKDELVECLEE 567 (568)
T ss_pred EEEHHHHHHHHhh
Confidence 9999999988764
No 34
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=307.88 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEE-EEcCCCCeEeeCCCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYD-LADQGGELCSLRYDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~-~~D~~G~~l~LRpDlT~~iaR~~a~~~~ 519 (846)
.++...++.+++.++++|++|||.+|.||+||++|++.. .++. ...+++ |.|.+|+.++||||+|+|+||+++++..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 356677899999999999999999999999999998632 3333 233444 4466999999999999999999987655
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc------cHHHHHHHHHHHHHcCCCceE-EEEcchhhHHHHHHhcCCC
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA------DFEVVKILTELLNELDIGDYE-IKLNHRLLLDGMLEICGVP 592 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~------DaEvI~l~~eil~~lgl~~~~-i~Inh~~ll~~il~~~gi~ 592 (846)
.|.|+||+|+|||+++ +|+|+|+|++ |+|++.++.++++.+|..++. +.|||.++++++++.
T Consensus 83 ~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l~la~~~l~~~g~~~~~~i~lGh~~~~~~l~~~---- 151 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSFKLFIQFIQQQLRDNVHFVVLGHYQLLDALLDK---- 151 (272)
T ss_pred CCceEEEeccEeccCC-------CcceeceEEECCCchhHHHHHHHHHHHHHHhCCCCCcEEEeccHHHHHHHHhC----
Confidence 5779999999999874 3899999998 789999999999999766653 799999999999984
Q ss_pred hHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 003117 593 SEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEIL 672 (846)
Q Consensus 593 ~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l 672 (846)
.+.+..+++.|.++|...++++ +... ..+..++.. .+.++++++... .. ....++++|+.+
T Consensus 152 ~~~~~~l~~~l~~Kn~~~l~~~----l~~~-------~~l~~~l~~--~~~~~l~~a~~l----~~--~~~~~~~~L~~l 212 (272)
T PRK12294 152 SLQTPDILSMIEERNLSGLVTY----LSTE-------HPIVQILKE--NTQQQLNVLEHY----IP--NDHPALVELKIW 212 (272)
T ss_pred HHHHHHHHHHHHhcCHHHHHHH----Hhhh-------hhHHHHHHh--chHHHHHHHHHh----hh--hhHHHHHHHHHH
Confidence 4567778899998876655443 2211 012222222 223566666532 21 235688999999
Q ss_pred HHHHHhcCCCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCC
Q 003117 673 FQALEKSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGT 719 (846)
Q Consensus 673 ~~~l~~~g~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~ 719 (846)
.+.++..|+. .+.||++++|+++|||| .++|++|||||+|+++||.
T Consensus 213 ~~~l~~~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~~~~~~i~~GGRYD~Ll~~Fg~ 268 (272)
T PRK12294 213 ERWLHTQGYK-DIHLDITAQPPRSYYTGLFIQCHFAENESRVLTGGYYKGSIEGFGL 268 (272)
T ss_pred HHHHHhcCCC-eEEEcccccCCCCCcCCeEEEEEECCCCCcccCCcCchhHHHhcCC
Confidence 9999988875 59999999999999999 2379999999999999974
No 35
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=1.2e-34 Score=347.70 Aligned_cols=388 Identities=16% Similarity=0.161 Sum_probs=278.2
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeec
Q 003117 389 SLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALD 468 (846)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~ 468 (846)
..|....+.+=+..+.+....+|.++-..+. .-...+.++|+++|+|.++.+++.+.+.+++.++++||.+|.
T Consensus 272 sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~-------lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~ 344 (686)
T PLN02908 272 SFPDKKLLKEYKHRIEEAKKRDHRLLGQKQE-------LFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVI 344 (686)
T ss_pred ccCChHHHHHHHhhhhhccccCHHHHHHhcC-------CeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3444444444444555556666666654321 112345678999999999999999999999999999999999
Q ss_pred CCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHHHHHHHHc----CCCCceEEEeeceeecCCC----C
Q 003117 469 TPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP----S 537 (846)
Q Consensus 469 tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p----~ 537 (846)
||.|++.++|.. +|++ .++||.| |.+++.++|||+.|++++++++.. +.+|+|+|++|++||+|.+ +
T Consensus 345 tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~G 422 (686)
T PLN02908 345 TPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTG 422 (686)
T ss_pred CCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcC
Confidence 999999999975 8876 4689998 778899999999999999999863 3579999999999999987 4
Q ss_pred CCCccceEecccccc--------cH-HHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhCh
Q 003117 538 KGRYREFYQCDFDIA--------DF-EVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDK 608 (846)
Q Consensus 538 ~Gr~REf~Q~g~ei~--------Da-EvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k 608 (846)
.+|.|||+|+|+++| +. |++.++.++++.||+ +|.+.++++. +..+..++........++.+|++.++
T Consensus 423 l~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~-~~~~~ls~r~--~~~~g~~~~w~~ae~~l~~~ld~~~~ 499 (686)
T PLN02908 423 LTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF-TYELKLSTRP--EKYLGDLETWDKAEAALTEALNAFGK 499 (686)
T ss_pred ccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEEeCCc--cccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 569999999999999 34 688899999999999 6999999985 33332211111112223333333221
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEe
Q 003117 609 QSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFD 688 (846)
Q Consensus 609 ~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~D 688 (846)
. |+ +. .... .++|+.. +.....++.++.++ .+++.|
T Consensus 500 ~-~~-----------~~-----~g~~--afygpki---------------d~~~~d~l~r~~~~----------~t~q~d 535 (686)
T PLN02908 500 P-WQ-----------LN-----EGDG--AFYGPKI---------------DITVSDALKRKFQC----------ATVQLD 535 (686)
T ss_pred C-cE-----------EC-----CCce--eecccce---------------EEEEEeccCCEeec----------cceeec
Confidence 1 10 00 0000 0111100 00111222332222 256777
Q ss_pred cCCC--CCCccccCCCcccCCCccchhhhhhCCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cH
Q 003117 689 LSLA--RGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KL 765 (846)
Q Consensus 689 lsl~--rgl~YYtG~g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~ 765 (846)
+.+. -+++|||-. |-.. ..+.+.......++||++.+|.++..+..+.|. +|.||+|++.++ ..
T Consensus 536 f~lp~~f~L~Y~~e~-----~~~~-------~~pv~ihrai~GsiERli~iL~e~~~g~~p~wl-sp~qv~Vipv~~~~~ 602 (686)
T PLN02908 536 FQLPIRFKLSYSAED-----EAKI-------ERPVMIHRAILGSVERMFAILLEHYAGKWPFWL-SPRQAIVVPISEKSQ 602 (686)
T ss_pred ccCHhhcCCEEECCC-----CCcC-------CCCEEEEeCceEhHHHHHHHHHHHcCCCCCCCC-CCceEEEEEECHHHH
Confidence 7654 368898831 1000 001111122334999999999886433334454 578999999987 67
Q ss_pred HHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 766 PLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 766 ~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
.++.++++.||++|++|+++. +.++++++++|.+.|++|++|||++|+++++|+||++.++++..++++++++.++++.
T Consensus 603 ~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~ 682 (686)
T PLN02908 603 DYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEER 682 (686)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHH
Confidence 899999999999999999998 4579999999999999999999999999999999999999999999999999998765
Q ss_pred h
Q 003117 845 N 845 (846)
Q Consensus 845 ~ 845 (846)
+
T Consensus 683 ~ 683 (686)
T PLN02908 683 A 683 (686)
T ss_pred h
Confidence 3
No 36
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-32 Score=310.62 Aligned_cols=366 Identities=16% Similarity=0.192 Sum_probs=243.5
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LR 503 (846)
++++.+.++|+++|+|.++.++++|++.+++.++++||++|.||.|++.++|.. +|++ .++||+|.|++++.++||
T Consensus 29 ~g~~~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~~~L~ 107 (439)
T PRK12325 29 AGMIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRE-SGRYDAYGKEMLRIKDRHDREMLYG 107 (439)
T ss_pred cCCccccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhheEEecCCCCEEEEc
Confidence 356677899999999999999999999999999999999999999999999964 5764 478999999999999999
Q ss_pred C---CChHHHHHHHHH-cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc----------cHHHHHHHHHHHHH
Q 003117 504 Y---DLTVPFARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA----------DFEVVKILTELLNE 566 (846)
Q Consensus 504 p---DlT~~iaR~~a~-~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~----------DaEvI~l~~eil~~ 566 (846)
| +++.+++|.... ++.+|+|+|++|++||+| +|+.| |.|||+|.|.++| ..+++.++.++++.
T Consensus 108 Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~ 187 (439)
T PRK12325 108 PTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFAR 187 (439)
T ss_pred CCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 556666665554 578999999999999999 77778 9999999999888 35688899999999
Q ss_pred cCCCceEEEEcchhhHHHHH-------HhcCCChHHHHHHH-HHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003117 567 LDIGDYEIKLNHRLLLDGML-------EICGVPSEKFRTIC-SSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKE 638 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il-------~~~gi~~~~~~~v~-~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~ 638 (846)
||+..+.+...... +.+.. ...|-+......-| .....-....|+. +.|..++
T Consensus 188 lgl~~~~v~~~~~~-~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~----------------~~l~~~l-- 248 (439)
T PRK12325 188 LGLKAIPMRADTGP-IGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV----------------ADLQPIV-- 248 (439)
T ss_pred cCCceEEEEEccCC-CCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH----------------HHHHHHH--
Confidence 99965665543321 11100 00011000000000 0000000000100 1111111
Q ss_pred cCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhc--CCCceEEEecCCCCCCccccCCCcccCCCccchhhh-
Q 003117 639 RGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKS--KCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIG- 715 (846)
Q Consensus 639 ~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~--g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~Li~- 715 (846)
+... ..+... .++. .-..+ ++...+..--++.-|..| --|-+|..-+.
T Consensus 249 --------~~~~---~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~ievg~~~-------~lg~~ys~~f~~ 299 (439)
T PRK12325 249 --------DEWT---SLYAAT-------EEMH----DEAAFAAVPEERRLSARGIEVGHIF-------YFGTKYSEPMNA 299 (439)
T ss_pred --------hhhc---ccccch-------hhhh----ccCCCCcCCCcceeecceEEEEeee-------cCcccccHhcCC
Confidence 0000 000000 0000 00000 111011111001011112 22333422111
Q ss_pred hh----CCCCcccee-ecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEcC---C-cHHHHHHHHHHHHHCCCeEE
Q 003117 716 MF----GTKQVPAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNAKVKAE 783 (846)
Q Consensus 716 ~f----g~~~~pAVG-fsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~GI~ae 783 (846)
.| |.+.....| |++|+||++.++.+++.++ +..|+. +|.||+|++++ + ...++.++++.||++||+|+
T Consensus 300 ~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~ 379 (439)
T PRK12325 300 KVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVL 379 (439)
T ss_pred EEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 11 111122334 8899999999999875332 224554 68999999994 3 56889999999999999999
Q ss_pred EEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 784 YMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 784 l~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
+++ +.++++++++|+..|+||+||||++|+++++|+||++.++++..++++++++.++
T Consensus 380 ~D~~~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 380 YDDTDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred EECCCCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 998 4679999999999999999999999999999999999999999999999988764
No 37
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.96 E-value=2.4e-28 Score=281.38 Aligned_cols=332 Identities=17% Similarity=0.214 Sum_probs=233.6
Q ss_pred cchHHHHHHHHHHhhccccccC-cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC--
Q 003117 409 PEFDGLLTKIREIVESNESRRL-PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-- 485 (846)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-- 485 (846)
-.|.+++.+. +++ ..+++|+++|+|.++.++++|++.+++.|+++||++|.||+|++.++|....++.
T Consensus 10 ~wy~~l~~~~---------~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~ 80 (472)
T TIGR00408 10 EWYHQILEKA---------EIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKG 80 (472)
T ss_pred HHHHHHHHHc---------CCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhh
Confidence 3667776543 232 3578999999999999999999999999999999999999999999987643344
Q ss_pred -cCceEEEEcCC----CCeEeeCCCChHHHHHHHHH----cCCCCceEEEeeceeecCCCC---CCCccceEecccccc-
Q 003117 486 -SKLIYDLADQG----GELCSLRYDLTVPFARYVAM----NGLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDIA- 552 (846)
Q Consensus 486 -~~~~y~~~D~~----G~~l~LRpDlT~~iaR~~a~----~~~~plK~y~ig~VfR~e~p~---~Gr~REf~Q~g~ei~- 552 (846)
.++||.+.|.+ ++.++|||+.|++++.++++ ++.+|+|+|++++|||+|.++ .+|.|||+|.|.+.+
T Consensus 81 f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~ 160 (472)
T TIGR00408 81 FEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAH 160 (472)
T ss_pred cchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhh
Confidence 57899999987 48899999999999966554 567899999999999999763 469999999999964
Q ss_pred ----c-----HHHHHHHHHHHH-HcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHc
Q 003117 553 ----D-----FEVVKILTELLN-ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEK 622 (846)
Q Consensus 553 ----D-----aEvI~l~~eil~-~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~ 622 (846)
+ .+++.++.+++. .||+. +.+... ..+++.
T Consensus 161 ~~~e~a~~e~~~~l~~y~~i~~~~lglp-~~~~~~-------------------------------~~~ek~-------- 200 (472)
T TIGR00408 161 ATAEEAEEQVLRALDIYKEFIENSLAIP-YFVGRK-------------------------------PEWEKF-------- 200 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCe-EEEEec-------------------------------Cchhhc--------
Confidence 2 225667777886 77773 322110 001100
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEE-EecCCCC--CCcccc
Q 003117 623 GLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVV-FDLSLAR--GLDYYT 699 (846)
Q Consensus 623 gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~-~Dlsl~r--gl~YYt 699 (846)
.|.. ...+ +. .+..+. +.+.+. +++ ++..+.+ ++.| .
T Consensus 201 ----------------~ga~-~~~~-~e----~~~~dg----------------r~~q~~-t~~~Lg~~~sk~f~i~y-~ 240 (472)
T TIGR00408 201 ----------------AGAE-YTWA-FE----TIMPDG----------------RTLQIA-TSHNLGQNFAKTFEIKF-E 240 (472)
T ss_pred ----------------CCcc-ceEE-Ee----EEEcCC----------------CEEEEe-eeecccccccHhcCCEE-E
Confidence 0000 0000 00 000000 000000 111 1111111 1111 1
Q ss_pred CCCcccCCCccchhhhhhCCCCccceeecchH-HHHHHHHHHhhhhh-hhcccc--CcceEEEEEc--C----C-cHHHH
Q 003117 700 GVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGI-ERVFTIMEQIQKER-NQIIRA--TETQVLVGLL--G----D-KLPLA 768 (846)
Q Consensus 700 G~g~ia~GGRYD~Li~~fg~~~~pAVGfsigl-eRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~--~----~-~~~~a 768 (846)
+ .. |.+..+.. +++|+ +|++.++.+.+.+. +..||+ +|+||+|+++ + + ....+
T Consensus 241 ~-----~~----------g~~~~~h~-~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A 304 (472)
T TIGR00408 241 T-----PT----------GDKEYAYQ-TSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAA 304 (472)
T ss_pred C-----CC----------CCEEeeEE-ccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHH
Confidence 1 01 11112222 45555 99999998764432 233444 7899999996 3 1 46789
Q ss_pred HHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 769 AELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 769 ~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
.++++.||+.||+|++++ +.++++++++|++.|+|++|+||++|+++++|+||++.++++..++++++++.+.+.+.
T Consensus 305 ~~l~~~Lr~~girv~lD~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~ 382 (472)
T TIGR00408 305 REVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLN 382 (472)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 999999999999999998 46899999999999999999999999999999999999999999999999998876653
No 38
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.96 E-value=2.3e-27 Score=273.87 Aligned_cols=319 Identities=17% Similarity=0.221 Sum_probs=226.9
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC----CCeEeeC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLR 503 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~----G~~l~LR 503 (846)
...++|+++|+|.++.++++|++.+++.|+++||++|.||+|++.++|...+|+. .++||.+.|.+ ++.++||
T Consensus 30 ~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~Lr 109 (477)
T PRK08661 30 YSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALR 109 (477)
T ss_pred cCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEe
Confidence 3447899999999999999999999999999999999999999999986556654 57899999877 5689999
Q ss_pred CCC----hHHHHHHHHHcCCCCceEEEeeceeecCCCCC--CCccceEecccccc--c--------HHHHHHHHHHH-HH
Q 003117 504 YDL----TVPFARYVAMNGLTSFKRHQIAKVYRRDNPSK--GRYREFYQCDFDIA--D--------FEVVKILTELL-NE 566 (846)
Q Consensus 504 pDl----T~~iaR~~a~~~~~plK~y~ig~VfR~e~p~~--Gr~REf~Q~g~ei~--D--------aEvI~l~~eil-~~ 566 (846)
|+. |..++|++.+++.+|+|+|++++|||+|.+.. +|.|||+|.+.+++ + .+++.++.+++ +.
T Consensus 110 PtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~ 189 (477)
T PRK08661 110 PTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDY 189 (477)
T ss_pred cCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 77778888878889999999999999997543 69999999999986 1 23556667777 66
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
||+. +.+ +.. ..|++. .|.. ...
T Consensus 190 Lglp-~~~--~~~-----------------------------~~~ekf------------------------~ga~-~~~ 212 (477)
T PRK08661 190 LAIP-VII--GKK-----------------------------TEWEKF------------------------AGAD-YTY 212 (477)
T ss_pred cCCe-EEE--Eec-----------------------------ChHHhh------------------------CCCc-cee
Confidence 7763 221 110 111110 0100 000
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceE-EEecCCCC--CCccccCCCcccCCCccchhhhhhCCCCcc
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKV-VFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVP 723 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i-~~Dlsl~r--gl~YYtG~g~ia~GGRYD~Li~~fg~~~~p 723 (846)
.+. .+..+. +.+.+ .++ .++..+.+ +..| .+ .. |..+.+
T Consensus 213 -~ie----~~~~dg----------------r~~q~-gt~~~Lg~~~s~~f~i~y-~d-----~~----------g~~~~v 254 (477)
T PRK08661 213 -TIE----AMMPDG----------------KALQA-GTSHYLGQNFAKAFDIKF-QD-----KD----------GKLEYV 254 (477)
T ss_pred -EEE----EEeCCC----------------CEEEE-EEecccccchhHhcCCEE-EC-----CC----------CCEeee
Confidence 000 000000 00000 011 11111111 1111 11 01 111122
Q ss_pred cee-ecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEc------CC-cHHHHHHHHHHHHHCCCeEEEEc-C-CCH
Q 003117 724 AVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLL------GD-KLPLAAELVSELWNAKVKAEYMV-H-KKV 790 (846)
Q Consensus 724 AVG-fsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~------~~-~~~~a~~la~~Lr~~GI~ael~~-~-~~l 790 (846)
..+ ++++ +|++.++.+.+.+. +..||+ +|+||+|+++ ++ ....+.++++.||++||+|++++ . .++
T Consensus 255 ~~~s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~ 333 (477)
T PRK08661 255 HQTSWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTP 333 (477)
T ss_pred EEecccHH-HHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
Confidence 222 3344 99999998865533 334554 6899999998 33 56789999999999999999998 3 689
Q ss_pred HHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 791 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 791 ~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
++++++|++.|+|++|+||++|+++++|+||++.++++..++++++++.+++.+.
T Consensus 334 gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~ 388 (477)
T PRK08661 334 GWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLE 388 (477)
T ss_pred HHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876653
No 39
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.95 E-value=9.2e-27 Score=266.72 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=217.0
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHH--CCCeeecCCccccccccccccCCC---cCceEEEE--------c----
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKR--HGAMALDTPVFEMRETLMGKYGED---SKLIYDLA--------D---- 494 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~--~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~--------D---- 494 (846)
.=..|++||+|.++.+++.+++.+++.|.+ +||.+|.||.+.+.++|.. +|+. .+.||... |
T Consensus 25 ~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~ 103 (456)
T PRK04173 25 GGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIE 103 (456)
T ss_pred cchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhH
Confidence 446899999999999999999999999987 8999999999999999865 7765 35566542 1
Q ss_pred ---------------------------------------------------CCCCeEeeCCCChHHH----HHHHHHcC-
Q 003117 495 ---------------------------------------------------QGGELCSLRYDLTVPF----ARYVAMNG- 518 (846)
Q Consensus 495 ---------------------------------------------------~~G~~l~LRpDlT~~i----aR~~a~~~- 518 (846)
.++..+.|||+....+ .+.+-.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~ 183 (456)
T PRK04173 104 ELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARK 183 (456)
T ss_pred HHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccc
Confidence 1122456788765544 34444566
Q ss_pred CCCceEEEeeceeecCC-CCCC--CccceEecccccc-cH-----H---HHHHHHHHHHHcCCCceEEEEcchhhHHHHH
Q 003117 519 LTSFKRHQIAKVYRRDN-PSKG--RYREFYQCDFDIA-DF-----E---VVKILTELLNELDIGDYEIKLNHRLLLDGML 586 (846)
Q Consensus 519 ~~plK~y~ig~VfR~e~-p~~G--r~REf~Q~g~ei~-Da-----E---vI~l~~eil~~lgl~~~~i~Inh~~ll~~il 586 (846)
.+|+|++++|+|||+|. +..| |.|||+|.+.++| +. | ++.++.+++..||++++.++++.+.
T Consensus 184 dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~------ 257 (456)
T PRK04173 184 KLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHL------ 257 (456)
T ss_pred cCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecC------
Confidence 89999999999999995 3445 9999999999998 21 1 2333444444444432222222110
Q ss_pred HhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHH
Q 003117 587 EICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLAL 666 (846)
Q Consensus 587 ~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al 666 (846)
+.+ ..++. ....
T Consensus 258 -------------------------------------------------------~~e---------~~~ys----~~~w 269 (456)
T PRK04173 258 -------------------------------------------------------PEE---------LAHYS----KATW 269 (456)
T ss_pred -------------------------------------------------------cch---------hhccH----HHHH
Confidence 000 00110 1111
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCCCccccCCCcccCCCccchhhh--hhCCC-------------Ccc-ceeecch
Q 003117 667 DDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIG--MFGTK-------------QVP-AVGVSLG 730 (846)
Q Consensus 667 ~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~Li~--~fg~~-------------~~p-AVGfsig 730 (846)
+.+ .....| ..| ...+.+++||+|| |.. .|++. ..| .+++|+|
T Consensus 270 -d~e----~~~~~g--------------~~~-~e~~g~~~~~dyd-L~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siG 328 (456)
T PRK04173 270 -DIE----YKFPFG--------------RFW-GELEGIANRTDYD-LSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAG 328 (456)
T ss_pred -hHH----HhCCCC--------------CcE-EEEeeeeccchhh-cccchhhcCCCeEEEecCCCCceeeeEEEEeccc
Confidence 111 111111 111 0012356788888 543 22221 134 5589999
Q ss_pred HHHHHHHHH-Hhhhhh---------hhcccc--CcceEEEEEcCC---cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 003117 731 IERVFTIME-QIQKER---------NQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMVHKKVMKLID 795 (846)
Q Consensus 731 leRL~~~L~-~~~~~~---------~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~ 795 (846)
+||++.++. +...+. ...|++ +|.||+|++.++ ....+.++++.||++ |+|+++...+++++++
T Consensus 329 ieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~~slgkkir 407 (456)
T PRK04173 329 LDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDSGSIGKRYR 407 (456)
T ss_pred HHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCCCCHHHHHH
Confidence 999655554 432220 012433 789999999986 567899999999999 9999986668999999
Q ss_pred HHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHH
Q 003117 796 RARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 843 (846)
Q Consensus 796 ~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 843 (846)
+|++.|+||+++||++|+++++|+||++.++++..++++++++.+++.
T Consensus 408 ~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 408 RQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred HHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988754
No 40
>PLN02837 threonine-tRNA ligase
Probab=99.95 E-value=9e-27 Score=276.31 Aligned_cols=348 Identities=22% Similarity=0.285 Sum_probs=253.8
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
..+|++.|+|.+..+++.+++.+++...++||++|.||.|.+.++|.. +|++ .++||++.|.+++.++|||.-++.
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~ 313 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQLRPMNCPY 313 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEECCCCcHH
Confidence 467999999999999999999999999999999999999999999864 7765 468999999889999999999988
Q ss_pred HHHHHHH----cCCCCceEEEeeceeecCCCC--CC--CccceEecccccc------c---HHHHHHHHHHHHHcCCCce
Q 003117 510 FARYVAM----NGLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIA------D---FEVVKILTELLNELDIGDY 572 (846)
Q Consensus 510 iaR~~a~----~~~~plK~y~ig~VfR~e~p~--~G--r~REf~Q~g~ei~------D---aEvI~l~~eil~~lgl~~~ 572 (846)
+.-++.. ++.+|+|+|++|+|||+|..+ .| |.|||+|.|.++| + .+++.++.++++.||+..+
T Consensus 314 ~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~ 393 (614)
T PLN02837 314 HILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKY 393 (614)
T ss_pred HHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 8877764 346899999999999999742 24 9999999999998 1 3467888999999999778
Q ss_pred EEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHH---HHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003117 573 EIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKK---EMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 649 (846)
Q Consensus 573 ~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~---eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l 649 (846)
.+.++.+. .++.|-+. .|++... +.+...|+.......-. .++|+..++
T Consensus 394 ~~~~~t~~-----~~~~g~~~----------------~w~~~~~~l~~~l~~~~~~~~~~~g~~---afygpkid~---- 445 (614)
T PLN02837 394 EINLSTRP-----EKSVGSDD----------------IWEKATTALRDALDDKGWEYKVDEGGG---AFYGPKIDL---- 445 (614)
T ss_pred EEEecCCc-----hhccCCHH----------------HHHHHHHHHHHHHHHcCCCceeCCCcc---cccCcceee----
Confidence 88888663 13334221 2322211 11122222211100000 011211000
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCc-cccCCCcccCCCccchhhhhhCCCCccce---
Q 003117 650 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV--- 725 (846)
Q Consensus 650 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~-YYtG~g~ia~GGRYD~Li~~fg~~~~pAV--- 725 (846)
. .. +.+.. .+.+ .++++|+.+...++ .|++. . |.+..|.+
T Consensus 446 -------~----~~---d~~gr------~~q~-~tiqldf~~~~~f~l~y~~~-----d----------~~~~~pv~ih~ 489 (614)
T PLN02837 446 -------K----IE---DALGR------KWQC-STIQVDFNLPERFDITYVDS-----N----------SEKKRPIMIHR 489 (614)
T ss_pred -------E----ee---ccCCc------eeee-cceeEeecchhhcCcEEECC-----C----------CCccCCEEEEc
Confidence 0 00 00000 0111 35777776664433 23331 1 11223333
Q ss_pred eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCE
Q 003117 726 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPW 804 (846)
Q Consensus 726 GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~ 804 (846)
+.-.++||++.+|.++..+..+.|. +|.||+|++.++ ...++.++++.||++||+|+++.+.++++++++|++.|+||
T Consensus 490 ~~~G~~eRlia~Lie~~~g~~P~~l-aP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~~~~slgkkir~A~~~gip~ 568 (614)
T PLN02837 490 AILGSLERFFGVLIEHYAGDFPLWL-APVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVCHGERLPKLIRNAETQKIPL 568 (614)
T ss_pred CCccCHHHHHHHHHHHcCCCCCCCC-CCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHcCCCE
Confidence 3222799999999987554445565 789999999987 67899999999999999999966778999999999999999
Q ss_pred EEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhhC
Q 003117 805 MVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846 (846)
Q Consensus 805 iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 846 (846)
+|+||++|+++++|+||++.++++..++++++++.+++++++
T Consensus 569 ~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~ 610 (614)
T PLN02837 569 MAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVEN 610 (614)
T ss_pred EEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888753
No 41
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.94 E-value=2.5e-25 Score=261.97 Aligned_cols=363 Identities=17% Similarity=0.220 Sum_probs=248.6
Q ss_pred CcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC--
Q 003117 408 DPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-- 485 (846)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-- 485 (846)
.|+|.++..++. +. .+......|..-|+|.+..+++.+.+.+++.+.++||.+|.||.+...+.|.. +|+.
T Consensus 196 ~~dH~~Lg~~~~-L~-----d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~-sgh~~~ 268 (613)
T PRK03991 196 EPPHVKLMREKE-LA-----DYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAI-REHADK 268 (613)
T ss_pred CCCHHHHHHHCC-Cc-----ccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhh-cccccc
Confidence 467777766531 10 11123457999999999999999999999999999999999999987776643 4443
Q ss_pred -cCceEEEEcCCCCeEeeCCCChHHHHHHHHH----cCCCCceEEEeec-eeecCCCC--CC--CccceEecccccc--c
Q 003117 486 -SKLIYDLADQGGELCSLRYDLTVPFARYVAM----NGLTSFKRHQIAK-VYRRDNPS--KG--RYREFYQCDFDIA--D 553 (846)
Q Consensus 486 -~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~----~~~~plK~y~ig~-VfR~e~p~--~G--r~REf~Q~g~ei~--D 553 (846)
..+||.+ +.+++.++|||..++++.-++.. ++.+|+|+|++|+ +||+|.++ .| |.|||+|.|.++| +
T Consensus 269 f~e~my~v-~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~ 347 (613)
T PRK03991 269 FGERQYRV-KSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKD 347 (613)
T ss_pred cchhceEe-cCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECC
Confidence 4689998 45568899999999999877764 3568999999999 99999754 34 9999999999999 2
Q ss_pred --------HHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCC
Q 003117 554 --------FEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLS 625 (846)
Q Consensus 554 --------aEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~ 625 (846)
.+++.++.++++.||+. +.+.++.++ ..++ .. +....+++...|++
T Consensus 348 ~eqa~~e~~~~l~~~~~i~~~lGl~-~~~~~~~t~---df~~----------~~------------~~~l~~~l~~~g~~ 401 (613)
T PRK03991 348 MEQAMEEFEKQYEMILETGEDLGRD-YEVAIRFTE---DFYE----------EN------------KDWIVELVKREGKP 401 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-eEEEecCHH---HHhh----------hH------------HHHHHHHHHHcCCC
Confidence 33677888999999994 777765431 0000 00 00011222222322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCc-cccCCCcc
Q 003117 626 VETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSI 704 (846)
Q Consensus 626 ~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~-YYtG~g~i 704 (846)
... +. ..|. ..++.........+.+. +.+.+ .++++|......++ .|.+
T Consensus 402 ~~~-----~~--~~g~------------~~~yg~kie~~~~d~~g------r~~q~-~T~qld~~~~~~f~l~y~d---- 451 (613)
T PRK03991 402 VLL-----EI--LPER------------KHYWVLKVEFAFIDSLG------RPIEN-PTVQIDVENAERFGIKYVD---- 451 (613)
T ss_pred EEe-----cc--cCCc------------cccCcCcEEEEEeCCCC------CEEEE-eeeecCcccchhCCCEEEC----
Confidence 100 00 0010 00111000000000000 00111 14566654432221 1221
Q ss_pred cCCCccchhhhhhCCCCcc-cee--ecchHHHHHHHHHHhhhhh-----hhcccc--CcceEEEEEcCC-cHHHHHHHHH
Q 003117 705 AAGGRYDNLIGMFGTKQVP-AVG--VSLGIERVFTIMEQIQKER-----NQIIRA--TETQVLVGLLGD-KLPLAAELVS 773 (846)
Q Consensus 705 a~GGRYD~Li~~fg~~~~p-AVG--fsigleRL~~~L~~~~~~~-----~~~~~~--~~~dVlV~~~~~-~~~~a~~la~ 773 (846)
.-|....| .+| ...++||++.++.++..+. ...||+ +|.||+|++.++ ....+.++++
T Consensus 452 -----------~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~ 520 (613)
T PRK03991 452 -----------ENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVAD 520 (613)
T ss_pred -----------CCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHH
Confidence 11222235 334 2345999999999876543 233444 799999999987 6789999999
Q ss_pred HHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 774 ELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 774 ~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
.||++||+|++++ +.++++++++|++.|+||+|+||++|+++++|+||++.++++..++++++++.+++++.
T Consensus 521 ~Lr~~GirV~lDdr~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 521 KLEAAGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 9999999999998 47899999999999999999999999999999999999999999999999999988764
No 42
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.5e-25 Score=258.88 Aligned_cols=378 Identities=19% Similarity=0.265 Sum_probs=276.4
Q ss_pred HHHHHHhhhccCCCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccc
Q 003117 394 EKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFE 473 (846)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le 473 (846)
+....-+..+....-++|.++-..+. .-+ +.....+|+.-|+|.+..+++.+++.++.....+||++|.||.+.
T Consensus 175 ~~l~~~l~~~eea~krdHrklg~el~-LF~-----~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~ 248 (589)
T COG0441 175 KELEAYLKRLEEAKKRDHRKLGKELD-LFS-----FSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLA 248 (589)
T ss_pred HHHHHHHhhhhhccCCchHhHHHhhc-cee-----eccccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeee
Confidence 33444444455555556666544332 000 112478999999999999999999999999999999999999999
Q ss_pred cccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHHHHHHHH----cCCCCceEEEeeceeecCCCC--CC--Ccc
Q 003117 474 MRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAM----NGLTSFKRHQIAKVYRRDNPS--KG--RYR 542 (846)
Q Consensus 474 ~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~----~~~~plK~y~ig~VfR~e~p~--~G--r~R 542 (846)
..++|.. +|++ .++||.+. ..++.++|||..|+.++..+.. ++.+|+|++.+|.|||+|.++ .| |.|
T Consensus 249 ~~~l~~~-SGH~~~y~e~mf~~~-~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR 326 (589)
T COG0441 249 DLELWEL-SGHWDNYKEDMFLTE-SDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVR 326 (589)
T ss_pred ecccchh-ccchhhccccceeec-cCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhcccccc
Confidence 9998865 6765 36799775 3448999999999999998885 356899999999999999875 24 999
Q ss_pred ceEecccccc------cH---HHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHH
Q 003117 543 EFYQCDFDIA------DF---EVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQ 613 (846)
Q Consensus 543 Ef~Q~g~ei~------Da---EvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~ 613 (846)
.|+|-|.+|| .. +++.++.++++.||+++|.++++.+. +..|.+ ..|+.
T Consensus 327 ~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~------k~ig~d----------------~~W~~ 384 (589)
T COG0441 327 GFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP------KFIGSD----------------EMWDK 384 (589)
T ss_pred ceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC------cccCCh----------------hhhHH
Confidence 9999999999 23 46778888899999988999999886 333322 23433
Q ss_pred HHHHHH---HHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecC
Q 003117 614 IKKEMV---EEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLS 690 (846)
Q Consensus 614 i~~eL~---~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dls 690 (846)
....|. +..+++... ..| ...|+........ .+.+....-..+|++|+.
T Consensus 385 a~~~l~~al~~~~~~~~~---------~~G------------~~aFyGPKid~~v-------~Dalgr~~q~~TIQlDf~ 436 (589)
T COG0441 385 AEAALREALKEIGVEYVE---------EPG------------EGAFYGPKIDFQV-------KDALGREWQLGTIQLDFN 436 (589)
T ss_pred HHHHHHHHHHhhCceeee---------cCC------------ceEEECcccceEE-------EeccCcceecceEEEecC
Confidence 222221 111221100 000 0123322111000 011111111248999998
Q ss_pred CCCCCc-cccCCCcccCCCccchhhhhhCCCCcc---ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cH
Q 003117 691 LARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVP---AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KL 765 (846)
Q Consensus 691 l~rgl~-YYtG~g~ia~GGRYD~Li~~fg~~~~p---AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~ 765 (846)
+...++ .|++ ..|. +..| .++....+||.+.+|.++..+..+.|. +|.||.|+++++ ..
T Consensus 437 lpeRF~l~Yv~----~d~~-----------~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WL-aPvQv~VipV~~~~~ 500 (589)
T COG0441 437 LPERFDLEYVD----EDGE-----------KKRPVIIHRAILGSIERFIGILLEHYAGALPTWL-APVQVRVIPVADEHL 500 (589)
T ss_pred ChhhceEEEEc----CCCC-----------ccCCEEEEeccchhHHHHHHHHHHhccCCCcccC-CccEEEEEEeChHHH
Confidence 874333 3454 1121 2234 556667899999999997766667887 789999999997 67
Q ss_pred HHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 766 PLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 766 ~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
.++.++++.|.++||+|+++. +++++++++.|...++||+++||++|.+++.|.+|...+++...++++++++.+++++
T Consensus 501 ~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~ 580 (589)
T COG0441 501 DYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEI 580 (589)
T ss_pred HHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHh
Confidence 899999999999999999998 6889999999999999999999999999999999999999888899999999998876
Q ss_pred h
Q 003117 845 N 845 (846)
Q Consensus 845 ~ 845 (846)
+
T Consensus 581 ~ 581 (589)
T COG0441 581 E 581 (589)
T ss_pred h
Confidence 4
No 43
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.6e-22 Score=210.58 Aligned_cols=352 Identities=18% Similarity=0.269 Sum_probs=231.7
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LR 503 (846)
.+++....+|++-|+|.+.++.+++.+.+...|+.-|+++|..|.+-+.++|+ ++|.+ .+++|+|.|++|+.++|.
T Consensus 34 ~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr~gkq~cL~ 112 (457)
T KOG2324|consen 34 VGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDRKGKQMCLT 112 (457)
T ss_pred hCccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeeccCCCEeccC
Confidence 47888888999999999999999999999999999999999999999999986 47876 488999999999999999
Q ss_pred CCChHHHHHHHHH-----cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc--cHH--------HHHHHHHHHH
Q 003117 504 YDLTVPFARYVAM-----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA--DFE--------VVKILTELLN 565 (846)
Q Consensus 504 pDlT~~iaR~~a~-----~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~--DaE--------vI~l~~eil~ 565 (846)
|..---+.+.+++ ++++|+++|+||+.||+| +|++| |-|||++.|++.| |.| |...++.+|+
T Consensus 113 pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFk 192 (457)
T KOG2324|consen 113 PTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFK 192 (457)
T ss_pred CchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9776666666665 467899999999999999 78887 8999999999999 444 5567788888
Q ss_pred HcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHH
Q 003117 566 ELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVL 645 (846)
Q Consensus 566 ~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~ 645 (846)
.|++ +|.-.-.+++.+.+-++ .+ .+.+.......+. .....| +.++. +.
T Consensus 193 qL~~-pfVkv~AdsG~iGG~vS-----hE-----fhl~~~vgED~l~-----~C~~C~--------------~s~n~-e~ 241 (457)
T KOG2324|consen 193 QLGL-PFVKVWADSGDIGGEVS-----HE-----FHLIHPVGEDTLM-----SCPSCG--------------YSKNS-ED 241 (457)
T ss_pred HcCC-CeEEEeecccccCceee-----ee-----EeccCccCcccee-----ecCcCC--------------ccCch-hh
Confidence 8887 34444344444333221 11 0000000000000 000001 11111 11
Q ss_pred HHHHH-hhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccCCCcccCCCccchhhh-hh----CC
Q 003117 646 LSKLR-QEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIG-MF----GT 719 (846)
Q Consensus 646 l~~l~-~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~Li~-~f----g~ 719 (846)
++--+ ..|.+...+ .|..+ ..|.+ +..|| -|-.|.+-+. .| |+
T Consensus 242 ~~~sk~~~Cp~C~~~--------~L~~~----------~~IEV------gHtF~-------LG~kYS~~lna~f~~~~gK 290 (457)
T KOG2324|consen 242 LDLSKIASCPKCNEG--------RLTKT----------KSIEV------GHTFL-------LGTKYSKPLNAKFVNVEGK 290 (457)
T ss_pred hcCCccccCCcccCC--------Ccccc----------cceEE------EEEEE-------eccccccccCceeeeecCC
Confidence 11000 000000000 01000 01111 23333 4566776553 33 33
Q ss_pred CCcccee-ecchHHHHHHHHHHhhhhh-hhcccc--CcceE-EEEEcCC-cHHHHHHHHHHHHHCCC----eEEEEcC--
Q 003117 720 KQVPAVG-VSLGIERVFTIMEQIQKER-NQIIRA--TETQV-LVGLLGD-KLPLAAELVSELWNAKV----KAEYMVH-- 787 (846)
Q Consensus 720 ~~~pAVG-fsigleRL~~~L~~~~~~~-~~~~~~--~~~dV-lV~~~~~-~~~~a~~la~~Lr~~GI----~ael~~~-- 787 (846)
++.-.+| |+||+.||+++..+...+. ...||. +|+|| +|.+..+ ..+.+.++..+|-...+ .-++.++
T Consensus 291 pe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr 370 (457)
T KOG2324|consen 291 PEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDR 370 (457)
T ss_pred cceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccch
Confidence 2333556 8999999999987754432 345776 79999 6665554 34556677776655322 1123222
Q ss_pred --CCHHHHHHHHHhcCCCEEEEEcC-cccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 788 --KKVMKLIDRARESKIPWMVIVGE-RELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 788 --~~l~~~~~~A~~~gi~~iviIg~-~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
-++++.++.|++.||||+||||. ....+..++|+....++..+...+.+.+.+.
T Consensus 371 ~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~~ 427 (457)
T KOG2324|consen 371 EELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLLS 427 (457)
T ss_pred hhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHhh
Confidence 24899999999999999999994 4455789999999899988888888876653
No 44
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.6e-22 Score=228.15 Aligned_cols=406 Identities=21% Similarity=0.227 Sum_probs=255.6
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LR 503 (846)
++++.++.+|++-|+|.+.+++++|++.+++.+++.|++|+..|+|.|.++|. .+|++ .+++|++.|++++.++||
T Consensus 29 Ag~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwk-Es~r~~~f~~El~~v~drg~~~l~L~ 107 (500)
T COG0442 29 AGMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWK-ESGRWEGFGPELFRVKDRGDRPLALR 107 (500)
T ss_pred cCceecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHH-HhChhhhcchhhEEEEccCCceeeeC
Confidence 57888999999999999999999999999999999999999999999977664 57765 589999999999999999
Q ss_pred CC----ChHHHHHHHHHcCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-----cH-----HHHHHHHHHHHH
Q 003117 504 YD----LTVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-----DF-----EVVKILTELLNE 566 (846)
Q Consensus 504 pD----lT~~iaR~~a~~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-----Da-----EvI~l~~eil~~ 566 (846)
|. +|.-+..++.+++.+|+++|||+++||+| +|.+| |.|||++.|.+.| ++ +.+..+.+++.+
T Consensus 108 PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~ 187 (500)
T COG0442 108 PTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLR 187 (500)
T ss_pred CCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 95 34444556777999999999999999999 56666 9999999999998 22 245677888888
Q ss_pred cCCCceEEEEcchhhHHHHHH--------hcCCChHHH-HHHHHHhhhhC-hhhHHH---HHHHHH--HHcCCCHHHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLE--------ICGVPSEKF-RTICSSIDKLD-KQSFEQ---IKKEMV--EEKGLSVETADR 631 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~--------~~gi~~~~~-~~v~~~l~kl~-k~~~~~---i~~eL~--~~~gl~~~~~~~ 631 (846)
+|+ .+..+..+.+...+-.. ..|-+.-.. ......+++-- ...++. ...+.. ...+++...
T Consensus 188 i~l-~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~--- 263 (500)
T COG0442 188 LPL-IFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRI--- 263 (500)
T ss_pred CCc-eEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEeee---
Confidence 876 35555544443332111 011000000 00000000000 000000 000000 012222111
Q ss_pred HHHHHHhcCC------hHHHHHHHHhhcccccccchH-HHHHHHHHHHHHHHHhcCCCceEEEe-cC-CCCCCcccc--C
Q 003117 632 IGTFVKERGS------PLVLLSKLRQEGSLFLENSSA-KLALDDLEILFQALEKSKCIDKVVFD-LS-LARGLDYYT--G 700 (846)
Q Consensus 632 L~~l~~~~g~------~~~~l~~l~~~~~~~~~~~~~-~~al~~L~~l~~~l~~~g~~~~i~~D-ls-l~rgl~YYt--G 700 (846)
+..++.++|+ |..+.+.--..-..+..+... ....+.-+.+..-++..+ ..+..| .+ ...|..||. |
T Consensus 264 ~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~--~~~~~D~~~~~~~G~kl~~~e~ 341 (500)
T COG0442 264 IGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLG--IRVEGDDRSPDGPGFKLNIWEG 341 (500)
T ss_pred eeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcc--eEEeccccCCCCCCceeeeeec
Confidence 1112223443 101110000000001111000 011122222222233322 356778 43 333443443 3
Q ss_pred --CC-cccCCCccchhhhh-----hCCCCcccee-ecchHHHHHHHHHHhhh-hhhhccc-c-CcceEEEEEcCC----c
Q 003117 701 --VG-SIAAGGRYDNLIGM-----FGTKQVPAVG-VSLGIERVFTIMEQIQK-ERNQIIR-A-TETQVLVGLLGD----K 764 (846)
Q Consensus 701 --~g-~ia~GGRYD~Li~~-----fg~~~~pAVG-fsigleRL~~~L~~~~~-~~~~~~~-~-~~~dVlV~~~~~----~ 764 (846)
.+ .|--|-||..-... .|..+..-.| ++++++|++.++.++.. +.+..|+ . +|+++.|+..+. .
T Consensus 342 ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~ 421 (500)
T COG0442 342 IEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQ 421 (500)
T ss_pred cccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchhHHH
Confidence 33 46789999875322 2322223344 89999996666666554 3456687 3 789999999875 2
Q ss_pred HHHHHHHHHHHHHCC-CeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHH
Q 003117 765 LPLAAELVSELWNAK-VKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 840 (846)
Q Consensus 765 ~~~a~~la~~Lr~~G-I~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L 840 (846)
...+.++..+|...| +.|++++ +++++-.+..|+..|+||.+++|++ .+.|.+.+|++.+++...++..+++.++
T Consensus 422 ~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 422 AEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred HHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 234456778888889 8888887 5789999999999999999999987 6679999999999998999888888765
No 45
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.87 E-value=2e-22 Score=215.30 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=135.6
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLR 503 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LR 503 (846)
++++.+.++|++||+|.++.++++|++.+++.|+++||++|.||+|++.++|.. +|+. .++||++.|++|+.++||
T Consensus 13 ag~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-sg~~~~~~~emy~~~d~~~~~l~Lr 91 (255)
T cd00779 13 AGFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKE-SGRWDAYGPELLRLKDRHGKEFLLG 91 (255)
T ss_pred cCCcccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCccccCcccEEEecCCCCeEEEe
Confidence 456678899999999999999999999999999999999999999999999965 4653 478999999999999999
Q ss_pred CCC----hHHHHHHHHHcCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cH---HHHHHHHHHHHH
Q 003117 504 YDL----TVPFARYVAMNGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DF---EVVKILTELLNE 566 (846)
Q Consensus 504 pDl----T~~iaR~~a~~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------Da---EvI~l~~eil~~ 566 (846)
|+. |..++|.+.+++.+|+|+||+|+|||+| +|+.| |.|||+|+|+++| |+ |++.++.++++.
T Consensus 92 Pt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~ 171 (255)
T cd00779 92 PTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKR 171 (255)
T ss_pred cCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 994 4455555555667899999999999999 89889 9999999999998 45 677788999999
Q ss_pred cCCCceEEEEcchhhHHH
Q 003117 567 LDIGDYEIKLNHRLLLDG 584 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~ 584 (846)
||+ ++.+..++++.+.+
T Consensus 172 Lgl-~~~~~~~~~~~~gg 188 (255)
T cd00779 172 LGL-PFVKVEADSGAIGG 188 (255)
T ss_pred cCC-cEEEEEecCCCCCC
Confidence 999 68888888876544
No 46
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.86 E-value=8.7e-21 Score=218.36 Aligned_cols=372 Identities=19% Similarity=0.268 Sum_probs=227.5
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHH-HHCCCeeecCCccccccccccccCCCc------------CceEE---------
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVF-KRHGAMALDTPVFEMRETLMGKYGEDS------------KLIYD--------- 491 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf-~~~G~~eI~tP~le~~e~~~~~~g~~~------------~~~y~--------- 491 (846)
..|++||.|.++.++++|++.+++.| ...|+.+|++|++.|.++|.. +|+.. ++.||
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~a-SGh~~~F~D~mv~~~~~~~~~RaD~l~e~~~ 104 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKA-SGHVDNFTDWMVDCKSCKERFRADHLIEEKL 104 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHh-cCCccccCCceeecCCCCCEecchHHHHHHh
Confidence 68999999999999999999999999 578999999999999998864 55531 11121
Q ss_pred --------------------EEcC------------------------CCCeEeeCCCChHHH----HHHHHH-cCCCCc
Q 003117 492 --------------------LADQ------------------------GGELCSLRYDLTVPF----ARYVAM-NGLTSF 522 (846)
Q Consensus 492 --------------------~~D~------------------------~G~~l~LRpDlT~~i----aR~~a~-~~~~pl 522 (846)
+.-+ ++....||||...++ -|.+-. ++.+|+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~klPf 184 (551)
T TIGR00389 105 GKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRKLPF 184 (551)
T ss_pred hhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCCCCe
Confidence 0001 133568999976655 344443 357899
Q ss_pred eEEEeeceeecC-CCCCC--CccceEecccccc-cHH-----HHH-HHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCC
Q 003117 523 KRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-DFE-----VVK-ILTELLNELDIGDYEIKLNHRLLLDGMLEICGVP 592 (846)
Q Consensus 523 K~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-DaE-----vI~-l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~ 592 (846)
-..|||++||+| .|+.| |.|||.|+.+|.| +.+ -.. +.+..+.-+.-..-.. + +...++. |+
T Consensus 185 giaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~--~----~~eav~~-g~- 256 (551)
T TIGR00389 185 GVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQES--G----IGEAVES-GM- 256 (551)
T ss_pred eehhhhHhhhcccCcccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhc--c----HHHHHHh-cc-
Confidence 999999999999 68777 9999999999998 221 111 1111111111000000 0 1111110 11
Q ss_pred hHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhhcccccccchHHHHHHHHHH
Q 003117 593 SEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGS-PLVLLSKLRQEGSLFLENSSAKLALDDLEI 671 (846)
Q Consensus 593 ~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~-~~~~l~~l~~~~~~~~~~~~~~~al~~L~~ 671 (846)
+++.....|-.-...++...|++++.+. ++-- +.+ +......+-+. ++..
T Consensus 257 ----------i~n~~~~y~~~~~~~fl~~~Gi~~~~lr-------frqh~~~e-~AHYa~~~~D~-----------e~~~ 307 (551)
T TIGR00389 257 ----------IENETLGYFIARVKQFLLEIGINPDKLR-------FRQHDKNE-MAHYAKDCWDF-----------EFLT 307 (551)
T ss_pred ----------cchHHHHHHHHHHHHHHHHhCCCHHHee-------ecccCcHH-HhhhccccEeE-----------EEec
Confidence 1111111222222334456777765431 1111 111 11111100000 0111
Q ss_pred HHHHHHhcCCCceEEEecCCC-----CCCccccCC--------------------------CcccC--------------
Q 003117 672 LFQALEKSKCIDKVVFDLSLA-----RGLDYYTGV--------------------------GSIAA-------------- 706 (846)
Q Consensus 672 l~~~l~~~g~~~~i~~Dlsl~-----rgl~YYtG~--------------------------g~ia~-------------- 706 (846)
-+.+.+..|+.++-.+|++-. ..+.|+.-. ..|..
T Consensus 308 ~~Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (551)
T TIGR00389 308 PYGWIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEEL 387 (551)
T ss_pred CCCcEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhh
Confidence 123445555555555555321 111121110 00000
Q ss_pred -CCccc---hhh--hh-----hCCCCcc-ceeecchHHHHHHHHHHhhhhh---------hhcccc--CcceEEEEEcCC
Q 003117 707 -GGRYD---NLI--GM-----FGTKQVP-AVGVSLGIERVFTIMEQIQKER---------NQIIRA--TETQVLVGLLGD 763 (846)
Q Consensus 707 -GGRYD---~Li--~~-----fg~~~~p-AVGfsigleRL~~~L~~~~~~~---------~~~~~~--~~~dVlV~~~~~ 763 (846)
...|. .++ .. .+.+-+| .+=-|+|+||++.++.++.... ...|++ +|.+|+|++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~ 467 (551)
T TIGR00389 388 DKNEVELDKDLVEIEMVTEVVHGEKYIPHVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVN 467 (551)
T ss_pred hccceecchhhhhheeeeeccCCcEecceEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecC
Confidence 00000 000 00 0223356 4457889999998887754320 013555 789999999984
Q ss_pred ---cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHH
Q 003117 764 ---KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 840 (846)
Q Consensus 764 ---~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L 840 (846)
....+.++++.||+.||+|+++...++++++++|++.|+||+|+||++++++++|+||++.++++..++++++.+++
T Consensus 468 ~~el~~~A~eIa~~LR~~GI~VeiD~s~sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L 547 (551)
T TIGR00389 468 KEELKEIAKEIFQALRKTGIRIKYDDSGTIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYI 547 (551)
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHH
Confidence 46789999999999999999998667999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 003117 841 QRR 843 (846)
Q Consensus 841 ~~~ 843 (846)
.+.
T Consensus 548 ~e~ 550 (551)
T TIGR00389 548 KKL 550 (551)
T ss_pred Hhh
Confidence 764
No 47
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.4e-20 Score=200.60 Aligned_cols=350 Identities=17% Similarity=0.228 Sum_probs=251.2
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCC
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpD 505 (846)
+..++.+|...|+|.+.++.+.+.+.++..++++||.||.||.+....+|.. +|++ .++||+|.- ..+.++|.|+
T Consensus 176 ff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e~-eke~~~LKPM 253 (560)
T KOG1637|consen 176 FFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFEV-EKEEFALKPM 253 (560)
T ss_pred eeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeeee-chhhhccCcc
Confidence 4568889999999999999999999999999999999999999999998865 7886 478999954 4566999999
Q ss_pred ChHHHHHHHHHc----CCCCceEEEeeceeecCCCC----CCCccceEecccccc------cHH---HHHHHHHHHHHcC
Q 003117 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIA------DFE---VVKILTELLNELD 568 (846)
Q Consensus 506 lT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~----~Gr~REf~Q~g~ei~------DaE---vI~l~~eil~~lg 568 (846)
.+++++=..+.. +.+|+|+--+|.+.|+|-++ ..|.|.|+|-|.+|| ..| ++..+..++.-+|
T Consensus 254 NCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 254 NCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhcc
Confidence 999998777653 46899999999999999754 349999999999999 344 4566666677677
Q ss_pred CCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003117 569 IGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSK 648 (846)
Q Consensus 569 l~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~ 648 (846)
. .|.+.++.+.- .++|. ...|++-... |++.+...|.|..
T Consensus 334 f-~f~l~lSTRPe-----~~lG~----------------l~~Wd~AE~~--------------L~~al~e~g~pw~---- 373 (560)
T KOG1637|consen 334 F-TFKLNLSTRPE-----KFLGD----------------LETWDEAEFK--------------LEEALNESGEPWV---- 373 (560)
T ss_pred c-cceeEeccChH-----HhccC----------------HHHHHHHHHH--------------HHHHHHHhCCCce----
Confidence 5 47777776631 12221 1245442111 1222223444421
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCC--CCccccCCCcccCCCccchhhhhhCCCCcc-ce
Q 003117 649 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVP-AV 725 (846)
Q Consensus 649 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~r--gl~YYtG~g~ia~GGRYD~Li~~fg~~~~p-AV 725 (846)
++.....|+..+.... +.+.+....-..+|++|+.+.- .+.|-+- .|-|..-+. ++ ||
T Consensus 374 lN~GDGAFYGPKIDi~-------l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~------~g~~erPVm------IHRAI 434 (560)
T KOG1637|consen 374 LNPGDGAFYGPKIDIT-------LDDALGRKHQCATIQLDFQLPIRFDLEYETE------DGDLERPVM------IHRAI 434 (560)
T ss_pred ecCCCcccccceeeeE-------hhhhcCcccceeeeeecccChhhcCceeecc------cccccchhh------HHHHH
Confidence 1222223444321111 1122222221247899988763 4555442 122221110 11 22
Q ss_pred eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCC
Q 003117 726 GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIP 803 (846)
Q Consensus 726 GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~ 803 (846)
=.++||++++|.++..+.-+.|. .|.++.||++++ ...++.++.++|...|+-++++.+ .++.+.++.|...+++
T Consensus 435 --lGSvERmiaiL~E~~~gkwPFWl-SPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn 511 (560)
T KOG1637|consen 435 --LGSVERMIAILLESYGGKWPFWL-SPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYN 511 (560)
T ss_pred --hhhHHHHHHHHHHHhCCCCCeee-ccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCccchHHHHHhhhhhccee
Confidence 23799999999998766656776 578999999997 678999999999999999998885 4599999999999999
Q ss_pred EEEEEcCcccccCeEEEEECC---CCceeeechHHHHHHHHH
Q 003117 804 WMVIVGERELNEGIVKLKNID---TTQEEVISRSNFVEEIQR 842 (846)
Q Consensus 804 ~iviIg~~e~~~g~V~Vk~l~---~~~e~~v~~~elv~~L~~ 842 (846)
++++||++|.+.++|.||.++ ++.+-+++.+++++.+++
T Consensus 512 ~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~ 553 (560)
T KOG1637|consen 512 FIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKE 553 (560)
T ss_pred EEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHH
Confidence 999999999999999999974 344668999999988764
No 48
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.82 E-value=6.6e-20 Score=200.25 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=132.2
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCCh
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT 507 (846)
...++|++||+|.++.+++.+++.++++|+++||++|.||+|++.++|.. +|+. .++||++ +.+|+.++|||+.|
T Consensus 16 ~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~l~LRP~~~ 93 (298)
T cd00771 16 DEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPF-EEEDEEYGLKPMNC 93 (298)
T ss_pred CCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEe-ccCCceEEEcccCC
Confidence 34789999999999999999999999999999999999999999999876 5653 4789999 56778999999999
Q ss_pred HHHHHHHHHc----CCCCceEEEeeceeecCCCC----CCCccceEecccccc------cH---HHHHHHHHHHHHcCCC
Q 003117 508 VPFARYVAMN----GLTSFKRHQIAKVYRRDNPS----KGRYREFYQCDFDIA------DF---EVVKILTELLNELDIG 570 (846)
Q Consensus 508 ~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~----~Gr~REf~Q~g~ei~------Da---EvI~l~~eil~~lgl~ 570 (846)
++++|+++.. ..+|+|+||+|+|||+|.++ .+|.|||+|.|+|+| ++ |++.++.++++.||+.
T Consensus 94 ~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~ 173 (298)
T cd00771 94 PGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF 173 (298)
T ss_pred HHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999863 46899999999999999764 369999999999998 22 5899999999999998
Q ss_pred ceEEEEcchh
Q 003117 571 DYEIKLNHRL 580 (846)
Q Consensus 571 ~~~i~Inh~~ 580 (846)
.+.+.+++++
T Consensus 174 ~~~i~l~~~~ 183 (298)
T cd00771 174 DYKVELSTRP 183 (298)
T ss_pred cEEEEEEcCh
Confidence 9999999996
No 49
>PLN02734 glycyl-tRNA synthetase
Probab=99.81 E-value=3.3e-19 Score=208.03 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=102.5
Q ss_pred cc-ceeecchHHHHHHHHHHhhh-----h---hhhcccc--CcceEEEEEcCC---cHHHHHHHHHHHHHCCCeEEEEcC
Q 003117 722 VP-AVGVSLGIERVFTIMEQIQK-----E---RNQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMVH 787 (846)
Q Consensus 722 ~p-AVGfsigleRL~~~L~~~~~-----~---~~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~~ 787 (846)
+| .|--|+|++||+.++.++.. + ....||+ +|++|.|+++.. ....+.++++.||++||+|+++..
T Consensus 528 iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~ 607 (684)
T PLN02734 528 TPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDIT 607 (684)
T ss_pred cCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 55 45588999999999888644 1 1234655 899999998864 467899999999999999999985
Q ss_pred -CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 788 -KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 788 -~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
.++++++++|++.|+||+|+||. +++|+||++.++++..|+++++++.+.+.++
T Consensus 608 ~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 608 GTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHc
Confidence 58999999999999999999996 6999999999999999999999999987654
No 50
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.80 E-value=3.9e-18 Score=191.06 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=87.2
Q ss_pred CcceEEEEEcCC-c---HHHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHhcCCCEEEEE-------cCcccccCeEE
Q 003117 752 TETQVLVGLLGD-K---LPLAAELVSELWNAKV-KAEYMVHKKVMKLIDRARESKIPWMVIV-------GERELNEGIVK 819 (846)
Q Consensus 752 ~~~dVlV~~~~~-~---~~~a~~la~~Lr~~GI-~ael~~~~~l~~~~~~A~~~gi~~iviI-------g~~e~~~g~V~ 819 (846)
+|+||.|+|+.+ . ...+.+|.+.|+++|| +|++|.+++++++++.++..|+||+|+| |++|.++++|+
T Consensus 433 APvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVT 512 (539)
T PRK14894 433 APIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVT 512 (539)
T ss_pred CCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEE
Confidence 799999999985 3 3889999999999998 9999998899999999999999999999 88888889999
Q ss_pred EEECCCCceeeechHHHHHHHHHHhh
Q 003117 820 LKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 820 Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
||++.++++..|+++++++.|++.+.
T Consensus 513 VR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 513 VRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred EEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 51
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.6e-18 Score=189.34 Aligned_cols=380 Identities=19% Similarity=0.225 Sum_probs=228.7
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHH--CCCeeecCCccccccccccccCCCc------------CceEE----
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKR--HGAMALDTPVFEMRETLMGKYGEDS------------KLIYD---- 491 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~--~G~~eI~tP~le~~e~~~~~~g~~~------------~~~y~---- 491 (846)
+..=..|++||.|.+..++++|.+.+++.|-. -+..+|+||++.|.++|.. +|+-. ++.|+
T Consensus 25 IYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kA-SGHvd~FsDplv~c~~c~~~yRADHL 103 (558)
T COG0423 25 IYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKA-SGHVDKFSDPLVECKKCGERYRADHL 103 (558)
T ss_pred eecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhh-cCcccccccceeeccccchhhhhhHH
Confidence 34455799999999999999999999999943 6899999999999998854 44310 11111
Q ss_pred -------------------------------------------EE-----c-CCCCeEeeCCCChH----HHHHHHHH-c
Q 003117 492 -------------------------------------------LA-----D-QGGELCSLRYDLTV----PFARYVAM-N 517 (846)
Q Consensus 492 -------------------------------------------~~-----D-~~G~~l~LRpDlT~----~iaR~~a~-~ 517 (846)
|+ - .+|+...|||+.-. .|-|.+-. +
T Consensus 104 iEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r 183 (558)
T COG0423 104 IEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFAR 183 (558)
T ss_pred HHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhc
Confidence 11 1 24577889999654 44455543 4
Q ss_pred CCCCceEEEeeceeecC-CCCCC--CccceEecccccc----cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcC
Q 003117 518 GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA----DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICG 590 (846)
Q Consensus 518 ~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~----DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~g 590 (846)
+.+|+-..+||+.||+| .|+.| |.|||.|+.+|.| +-+.... +++ .+..+.+-+...-.. +
T Consensus 184 ~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f-----~~v--~~~~l~l~~~~~q~~-----~ 251 (558)
T COG0423 184 NKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKF-----NEV--KDEKLPLLPREAQEE-----G 251 (558)
T ss_pred cCCCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCcccCcch-----hhh--hhhhcccccHHHhhh-----h
Confidence 67899999999999999 47666 9999999999998 2111110 000 111111111110000 0
Q ss_pred CChHHHHHHHH-HhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHH
Q 003117 591 VPSEKFRTICS-SIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDL 669 (846)
Q Consensus 591 i~~~~~~~v~~-~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L 669 (846)
....+|.+ .+..--...+......++..+|++++.+..-+. .|.+.-...+ .+-+.. -.
T Consensus 252 ---~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh------~~~E~AHYa~-~twD~E----------~~ 311 (558)
T COG0423 252 ---TEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQH------LPEELAHYSK-DTWDAE----------YK 311 (558)
T ss_pred ---hhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhc------ChHHHhhhhh-cceeEE----------Ee
Confidence 00111100 011000111222233455567777654322211 1212111111 000000 00
Q ss_pred HHHHHHHHhcCCCceEEEecCCCCCCccccC---------------------CCcccCCCcc--------------chhh
Q 003117 670 EILFQALEKSKCIDKVVFDLSLARGLDYYTG---------------------VGSIAAGGRY--------------DNLI 714 (846)
Q Consensus 670 ~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------------------~g~ia~GGRY--------------D~Li 714 (846)
-.-+.+.+..|+.++=.+|++- +.. |+| ..--.-|-++ +.+.
T Consensus 312 ~~~~gWiE~~GiAdRtdYDL~~--H~k-~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~ 388 (558)
T COG0423 312 FPFGGWIELVGIADRTDYDLSR--HSK-FSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELE 388 (558)
T ss_pred cCCCceEEEEEeecccccchhh--hhh-hccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhh
Confidence 0001133444444444444431 111 121 0000001111 0000
Q ss_pred hhh-------------------CCCCcc-ceeecchHHHHHHHHHHhhhh--hh--------hccccCcceEEEEEcCC-
Q 003117 715 GMF-------------------GTKQVP-AVGVSLGIERVFTIMEQIQKE--RN--------QIIRATETQVLVGLLGD- 763 (846)
Q Consensus 715 ~~f-------------------g~~~~p-AVGfsigleRL~~~L~~~~~~--~~--------~~~~~~~~dVlV~~~~~- 763 (846)
... +.+-+| .|--|+|+||++.++.+..-. .. ....-+|++|.|.|+..
T Consensus 389 ~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k 468 (558)
T COG0423 389 KELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKK 468 (558)
T ss_pred hccCccccccchhheeeeeeccCceecCceeccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecc
Confidence 000 112356 456899999999887764211 11 00122789999999975
Q ss_pred --cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 764 --KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 764 --~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
.-..+.++.+.|++.|+.+++++..++++.++.+++.|.||.|+|.-+.+++++|+||++++-+|..|+++||..+|+
T Consensus 469 ~~l~~~a~~i~~~L~~~~~~v~yDdsGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~ 548 (558)
T COG0423 469 DELVEIAKEIFEKLRELGFNVDYDDSGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLR 548 (558)
T ss_pred cchhHHHHHHHHHHHhcCceEEecCCCcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHH
Confidence 457899999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 003117 842 RRLN 845 (846)
Q Consensus 842 ~~l~ 845 (846)
..++
T Consensus 549 ~~~~ 552 (558)
T COG0423 549 ELIK 552 (558)
T ss_pred HHhc
Confidence 8875
No 52
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.78 E-value=1.3e-18 Score=186.64 Aligned_cols=152 Identities=25% Similarity=0.241 Sum_probs=128.5
Q ss_pred ccCccc-CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---c-CceEEEEcCCC----C
Q 003117 428 RRLPKL-PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---S-KLIYDLADQGG----E 498 (846)
Q Consensus 428 ~~~~~~-p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~-~~~y~~~D~~G----~ 498 (846)
+++.+. ++|++||+|.++.++++|++.+++.++++||++|.||.|++.++|. ++|+. . +++|.+.|.+| +
T Consensus 14 g~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~ 92 (264)
T cd00772 14 ELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEE 92 (264)
T ss_pred CCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCc
Confidence 444444 8999999999999999999999999999999999999999999885 46765 2 67999999887 8
Q ss_pred eEeeCCCChHHHHHHHHHc----CCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cHHH---HHHHH
Q 003117 499 LCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DFEV---VKILT 561 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~~----~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------DaEv---I~l~~ 561 (846)
.++|||+.|++++++++.. +.+|+|+|++++|||+| +|..| |.|||+|+|.+++ +.|+ +..+.
T Consensus 93 ~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~ 172 (264)
T cd00772 93 DFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYA 172 (264)
T ss_pred eEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988763 57899999999999999 78778 9999999999998 4454 44558
Q ss_pred HHHHHcCCCceEEEEcchh
Q 003117 562 ELLNELDIGDYEIKLNHRL 580 (846)
Q Consensus 562 eil~~lgl~~~~i~Inh~~ 580 (846)
++++.||.-++.+....++
T Consensus 173 ~i~~~l~~lp~~~~~~~~~ 191 (264)
T cd00772 173 EIARDLAAIDFIEGEADEG 191 (264)
T ss_pred HHHHhcCCccEEEEEcCCC
Confidence 9999998325766665543
No 53
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.77 E-value=9.2e-19 Score=184.61 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCC---CcCceEEEEcCC----CCeEeeCCCChHHHHHHHHHc
Q 003117 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE---DSKLIYDLADQG----GELCSLRYDLTVPFARYVAMN 517 (846)
Q Consensus 445 ~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~---~~~~~y~~~D~~----G~~l~LRpDlT~~iaR~~a~~ 517 (846)
+.++++|++.+.+.|.++||++|.||+|++.++|.. .++ ..++||++.|++ |+.++||||.|+|++|+++.+
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFK-GGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhh-cCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 578999999999999999999999999999999865 332 247899999988 899999999999999999864
Q ss_pred ----CCCCceEEEeeceeecCCCC---CCCccceEecccccc---------cHHHHHHHHHHHHHcCCCceEEEEcchhh
Q 003117 518 ----GLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDIA---------DFEVVKILTELLNELDIGDYEIKLNHRLL 581 (846)
Q Consensus 518 ----~~~plK~y~ig~VfR~e~p~---~Gr~REf~Q~g~ei~---------DaEvI~l~~eil~~lgl~~~~i~Inh~~l 581 (846)
..+|+|+||+|+|||+|.++ .+|.|||+|.|+|++ +.|++.++.++++.||+ ++.+.+++.+.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl-~~~i~~~~~~~ 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDPF 159 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEccChh
Confidence 35799999999999999876 679999999999998 57899999999999998 69999999863
No 54
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.72 E-value=1.2e-17 Score=179.03 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=126.2
Q ss_pred cchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---
Q 003117 409 PEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED--- 485 (846)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~--- 485 (846)
-.|++++.++- + ...+.++|+++|+|.++.++++|++.+++.++++||++|.||.+++.++|..++|+.
T Consensus 4 ~w~~~l~~~~~-~-------~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f 75 (261)
T cd00778 4 EWYTEVITKAE-L-------IDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGF 75 (261)
T ss_pred HHHHHHHHHhC-C-------cccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhc
Confidence 35777776642 1 114468899999999999999999999999999999999999999999886556665
Q ss_pred cCceEEEEcCCCC----eEeeCCC----ChHHHHHHHHHcCCCCceEEEeeceeecCCCC---CCCccceEecccccc--
Q 003117 486 SKLIYDLADQGGE----LCSLRYD----LTVPFARYVAMNGLTSFKRHQIAKVYRRDNPS---KGRYREFYQCDFDIA-- 552 (846)
Q Consensus 486 ~~~~y~~~D~~G~----~l~LRpD----lT~~iaR~~a~~~~~plK~y~ig~VfR~e~p~---~Gr~REf~Q~g~ei~-- 552 (846)
.++||++.|.+++ .++|||+ +|..+++.+.+++.+|+|+|+++++||+|.++ .+|.|||+|.|.+++
T Consensus 76 ~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~ 155 (261)
T cd00778 76 APEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHA 155 (261)
T ss_pred CcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccC
Confidence 5789999987754 7999999 66666677766778999999999999999764 459999999999864
Q ss_pred -----c---HHHHHHHHHHHHHc-CCC
Q 003117 553 -----D---FEVVKILTELLNEL-DIG 570 (846)
Q Consensus 553 -----D---aEvI~l~~eil~~l-gl~ 570 (846)
+ .+++.++.++++.| |+.
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~~~llgl~ 182 (261)
T cd00778 156 TEEEAEEEVLQILDLYKEFYEDLLAIP 182 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 1 23567788999998 884
No 55
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.72 E-value=1.3e-17 Score=178.26 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=112.3
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCC--CeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCCh-
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHG--AMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLT- 507 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G--~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT- 507 (846)
...++|++||+|.++.++++|++.+++.|.++| |.+|.||++++.+.|..+.|+. |.+++.++||||+|
T Consensus 18 y~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~--------d~~~~~~~Lrp~~~~ 89 (254)
T cd00774 18 YGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV--------ESGGNLGYLRPETAQ 89 (254)
T ss_pred ccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc--------CCCCcccccCCcccc
Confidence 355899999999999999999999999999996 9999999999986554333332 45567899999999
Q ss_pred ---HHHHHHHHHc-CCCCceEEEeeceeecCCCCC---CCccceEecccccc------c---HHHHHHHHHHHHHcCCCc
Q 003117 508 ---VPFARYVAMN-GLTSFKRHQIAKVYRRDNPSK---GRYREFYQCDFDIA------D---FEVVKILTELLNELDIGD 571 (846)
Q Consensus 508 ---~~iaR~~a~~-~~~plK~y~ig~VfR~e~p~~---Gr~REf~Q~g~ei~------D---aEvI~l~~eil~~lgl~~ 571 (846)
++++|.+..+ +.+|+|+||+|+|||+|.++. +|.|||+|+|+|+| . ..++....+++.++|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 90 GIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred hHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 7999988876 489999999999999997544 79999999999999 1 246778889999998753
No 56
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.68 E-value=1.5e-16 Score=160.26 Aligned_cols=135 Identities=25% Similarity=0.305 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHH-HCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHHHHHHHH-----c
Q 003117 447 VREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAM-----N 517 (846)
Q Consensus 447 ~~~~i~~~l~~vf~-~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~-----~ 517 (846)
++++|++.+++.+. ++||++|.||+|.+.++|.. +|+. .++||++.|.+++.++|||+.++++++++.. +
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 47889999999999 99999999999999999876 6764 4679999999999999999999999999986 3
Q ss_pred CCCCceEEEeeceeecC-CCC--CCCccceEecccccc---------cHHHHHHHHHHHHHcCCCceEEEEcchhhH
Q 003117 518 GLTSFKRHQIAKVYRRD-NPS--KGRYREFYQCDFDIA---------DFEVVKILTELLNELDIGDYEIKLNHRLLL 582 (846)
Q Consensus 518 ~~~plK~y~ig~VfR~e-~p~--~Gr~REf~Q~g~ei~---------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll 582 (846)
+.+|+|+|++|++||+| ++. ..|.|||+|.|+++| ..+++..+.++++.||++++.+..++++-+
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~ 156 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGEL 156 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTS
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCcc
Confidence 45899999999999999 554 569999999999998 356888999999999998899999988644
No 57
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.53 E-value=1.9e-14 Score=167.36 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=117.8
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccc-------------------cccccccCCC-------------
Q 003117 438 RDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMR-------------------ETLMGKYGED------------- 485 (846)
Q Consensus 438 ~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~-------------------e~~~~~~g~~------------- 485 (846)
+|++|.+...+.++++.++++|..+||.||.+|.+|.. |+|..+.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~ 304 (489)
T PRK04172 225 PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKE 304 (489)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999943 5554332210
Q ss_pred ----------cCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc---
Q 003117 486 ----------SKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--- 552 (846)
Q Consensus 486 ----------~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--- 552 (846)
..-+|.|.|+.++.++|||++|++++|+++.+...|+|+|++|+|||+|+++.+|.|||+|+++.++
T Consensus 305 ~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 305 VHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGED 384 (489)
T ss_pred HHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCC
Confidence 0125777778889999999999999999998888899999999999999888899999999999998
Q ss_pred --cHHHHHHHHHHHHHcCCCceEE
Q 003117 553 --DFEVVKILTELLNELDIGDYEI 574 (846)
Q Consensus 553 --DaEvI~l~~eil~~lgl~~~~i 574 (846)
.+|++.++.+++..+|+.++.+
T Consensus 385 ~~f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 385 VSFRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred CCHHHHHHHHHHHHHHhCCceEEE
Confidence 5789999999999999865544
No 58
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.52 E-value=5.4e-14 Score=156.46 Aligned_cols=127 Identities=23% Similarity=0.283 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCcccccccc---ccccCC-CcCceEEEEcCCCCeEeeCCCChHHHHHHHHHc--
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETL---MGKYGE-DSKLIYDLADQGGELCSLRYDLTVPFARYVAMN-- 517 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~---~~~~g~-~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~-- 517 (846)
...-++++++.++++|..+||+||.||+|+..+.+ ....+. ..+++|++. +.++||||+|++++|+++.+
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~ 313 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDR 313 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhh
Confidence 34557889999999999999999999999644433 211111 135788863 36899999999999999874
Q ss_pred -CCCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHcCCCceEEE
Q 003117 518 -GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 518 -~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
...|+|+||+|+|||+|.++.+|.|||+|+|++++ -+|+..++.++|+.||+ +|.+.
T Consensus 314 ~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~LGI-dfeit 376 (453)
T TIGR02367 314 ALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHLEI-DFEIV 376 (453)
T ss_pred hccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-ceEEe
Confidence 35699999999999999999999999999999998 35666799999999998 46663
No 59
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=99.47 E-value=2e-13 Score=146.12 Aligned_cols=97 Identities=27% Similarity=0.466 Sum_probs=87.7
Q ss_pred cccCcceEEEEEcCC--cHHHHHHHHHHHHHCCCeEEEEcC--CCHHHHHHHHHhcCCCEEEEEcCcc------cccCeE
Q 003117 749 IRATETQVLVGLLGD--KLPLAAELVSELWNAKVKAEYMVH--KKVMKLIDRARESKIPWMVIVGERE------LNEGIV 818 (846)
Q Consensus 749 ~~~~~~dVlV~~~~~--~~~~a~~la~~Lr~~GI~ael~~~--~~l~~~~~~A~~~gi~~iviIg~~e------~~~g~V 818 (846)
|.+.+||||||+++. .+..+++|++.||++||+||+.++ .++++++.+|+..||+|+|||++.+ -..+.|
T Consensus 1 W~~~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~l 80 (273)
T PF12745_consen 1 WKPSRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPL 80 (273)
T ss_pred CCCCcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCce
Confidence 788999999999997 458999999999999999999764 4899999999999999999999965 223469
Q ss_pred EEEECCCCceeeechHHHHHHHHHHhh
Q 003117 819 KLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 819 ~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
|||++.++.|.+|+++||++||+++++
T Consensus 81 KVK~l~~~~e~dv~~~eLv~~l~~ei~ 107 (273)
T PF12745_consen 81 KVKSLEKKKETDVDRDELVDWLQQEIR 107 (273)
T ss_pred EEeccCCCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999885
No 60
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.39 E-value=1.1e-12 Score=143.47 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=116.9
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHH
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
..|++-|+|.++.+++.+++.+++.+.++||++|.||.|.+.++|.. +|+. .++||++.| +.++|+|+.+.++
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~ 116 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVPL 116 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHHH
Confidence 45688999999999999999999999999999999999999999864 6764 367999965 6799999999999
Q ss_pred HHHHHHc----CCCCceEEEeeceeecCCC-C----CC--CccceEecccccc---------cHHHHHHHHHHHHHcCCC
Q 003117 511 ARYVAMN----GLTSFKRHQIAKVYRRDNP-S----KG--RYREFYQCDFDIA---------DFEVVKILTELLNELDIG 570 (846)
Q Consensus 511 aR~~a~~----~~~plK~y~ig~VfR~e~p-~----~G--r~REf~Q~g~ei~---------DaEvI~l~~eil~~lgl~ 570 (846)
+.+++.. +.+|+|+|++|++||+|.. . .| |.|||.|.+..+| -.+++..+.++++.||+.
T Consensus 117 ~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~ 196 (297)
T cd00770 117 AALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLP 196 (297)
T ss_pred HHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9988753 4689999999999999954 2 34 8999999999988 134778889999999996
Q ss_pred ceEEE
Q 003117 571 DYEIK 575 (846)
Q Consensus 571 ~~~i~ 575 (846)
-..+.
T Consensus 197 ~~~~~ 201 (297)
T cd00770 197 YRVVN 201 (297)
T ss_pred EEEEE
Confidence 33333
No 61
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.36 E-value=3.7e-12 Score=115.02 Aligned_cols=88 Identities=32% Similarity=0.502 Sum_probs=82.6
Q ss_pred eEEEEEcCC----cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCcee
Q 003117 755 QVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 829 (846)
Q Consensus 755 dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~ 829 (846)
||+|++++. ....+.++++.||++||++++++ +.++++++++|...|+||+++||++|.++++|+||++.++++.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 588999986 45789999999999999999998 5679999999999999999999999999999999999999999
Q ss_pred eechHHHHHHHHH
Q 003117 830 VISRSNFVEEIQR 842 (846)
Q Consensus 830 ~v~~~elv~~L~~ 842 (846)
.|+++|++++|++
T Consensus 81 ~v~~~el~~~l~~ 93 (94)
T PF03129_consen 81 TVSLEELIEYLKE 93 (94)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEEHHHHHHHHhh
Confidence 9999999999986
No 62
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.35 E-value=5.5e-12 Score=143.69 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCC-ccccc----c-cccc--ccCCCcCceEEEEcC--------------------
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTP-VFEMR----E-TLMG--KYGEDSKLIYDLADQ-------------------- 495 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP-~le~~----e-~~~~--~~g~~~~~~y~~~D~-------------------- 495 (846)
..--...+.+.++++|..-||.++.+| .+|.. | ++.+ +-..+....|-+.++
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~H 306 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVH 306 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHh
Confidence 334456777789999999999999876 45542 1 1111 111122445655331
Q ss_pred -----------------CCCeEeeCCCChHHHHHHHHHc-------CC-CCceEEEeeceeecCCCCCCCccceEecccc
Q 003117 496 -----------------GGELCSLRYDLTVPFARYVAMN-------GL-TSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550 (846)
Q Consensus 496 -----------------~G~~l~LRpDlT~~iaR~~a~~-------~~-~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~e 550 (846)
..+.++||+++|++.+|+++++ .. .|.|+|++|+|||+|.++.+|++||+|++.+
T Consensus 307 e~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~ 386 (494)
T PTZ00326 307 EVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGF 386 (494)
T ss_pred ccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEE
Confidence 1146899999999999999985 22 4999999999999999999999999999999
Q ss_pred cc-----cHHHHHHHHHHHHHcCCCc--eE-----------------------EEEcchhhHH-HHHHhcCCCh
Q 003117 551 IA-----DFEVVKILTELLNELDIGD--YE-----------------------IKLNHRLLLD-GMLEICGVPS 593 (846)
Q Consensus 551 i~-----DaEvI~l~~eil~~lgl~~--~~-----------------------i~Inh~~ll~-~il~~~gi~~ 593 (846)
++ ++|++.++.++++++|+.+ |. |+|++.++++ .+++.+|++.
T Consensus 387 vi~~~~s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~ 460 (494)
T PTZ00326 387 VIDRNLTLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPE 460 (494)
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCCC
Confidence 98 7899999999999998765 55 8899999999 9999999864
No 63
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.33 E-value=1.3e-11 Score=117.18 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=87.0
Q ss_pred CcceEEEEEcC--C-cHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCce
Q 003117 752 TETQVLVGLLG--D-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 828 (846)
Q Consensus 752 ~~~dVlV~~~~--~-~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e 828 (846)
+|++|+|++.+ + ...+++++++.||++|++|++++..++++++++|++.|++|+++||++|.++++|+||++.++++
T Consensus 25 ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~~ 104 (121)
T cd00858 25 APIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMRQ 104 (121)
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCCce
Confidence 68999999998 6 56889999999999999999987656999999999999999999999999999999999999999
Q ss_pred eeechHHHHHHHHHHhh
Q 003117 829 EVISRSNFVEEIQRRLN 845 (846)
Q Consensus 829 ~~v~~~elv~~L~~~l~ 845 (846)
..++++++++.+.+.+|
T Consensus 105 ~~v~l~~l~~~l~~~~~ 121 (121)
T cd00858 105 VRVKIEELPSYLRELIR 121 (121)
T ss_pred EEEEHHHHHHHHHHHhC
Confidence 99999999999987664
No 64
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.29 E-value=1.7e-11 Score=110.47 Aligned_cols=88 Identities=26% Similarity=0.289 Sum_probs=81.1
Q ss_pred cceEEEEEcCC----cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCc
Q 003117 753 ETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ 827 (846)
Q Consensus 753 ~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~ 827 (846)
|.+|.|++... ...++++++..||++|++|++++ ..++++++++|++.|++|+++||++|+++++|+||++.+++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 57899999875 46789999999999999999988 46899999999999999999999999999999999999999
Q ss_pred eeeechHHHHHHH
Q 003117 828 EEVISRSNFVEEI 840 (846)
Q Consensus 828 e~~v~~~elv~~L 840 (846)
+..++++++++.|
T Consensus 81 ~~~~~~~~~~~~l 93 (94)
T cd00861 81 KEEISIDELLEFL 93 (94)
T ss_pred ceEEeHHHHHHhh
Confidence 9999999998776
No 65
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.27 E-value=1.8e-11 Score=137.12 Aligned_cols=123 Identities=27% Similarity=0.358 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-----cCceEEEEcCCCCeEeeCCCChHHHHHHHHHc---C
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMN---G 518 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-----~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~---~ 518 (846)
-..++++.++++|..+||.||.||.|...+.+.. .+.. .+.+|.+ | +..+|||++|++++|+++.+ .
T Consensus 205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~i-d---eel~LRpsLtPsLlr~la~n~k~~ 279 (417)
T PRK09537 205 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRV-D---KNFCLRPMLAPGLYNYLRKLDRIL 279 (417)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheee-C---CceEehhhhHHHHHHHHHhhhhcc
Confidence 3678889999999999999999999987665432 3321 2457765 2 46899999999999998864 3
Q ss_pred CCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHcCCCceEEE
Q 003117 519 LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 519 ~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
..|+|+|++|+|||+|.++.++.+||+|++++++ -+|+..++.++|+.||+ +|.+.
T Consensus 280 ~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI-~f~i~ 340 (417)
T PRK09537 280 PDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGI-DYEII 340 (417)
T ss_pred cCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCC-CcEEe
Confidence 5799999999999999888889999999999998 35788899999999998 46665
No 66
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.26 E-value=4.9e-11 Score=106.60 Aligned_cols=88 Identities=30% Similarity=0.472 Sum_probs=81.0
Q ss_pred cceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceee
Q 003117 753 ETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEV 830 (846)
Q Consensus 753 ~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~ 830 (846)
|.+|+|++.++ ...+++++++.||+.|++|++++ ..++++++++|++.|++++++||++|..++.+++|++.++++..
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 57889988876 67899999999999999999987 46799999999999999999999999999999999999999999
Q ss_pred echHHHHHHH
Q 003117 831 ISRSNFVEEI 840 (846)
Q Consensus 831 v~~~elv~~L 840 (846)
++++++++.+
T Consensus 81 ~~~~~~~~~~ 90 (91)
T cd00860 81 MSLDEFIEKL 90 (91)
T ss_pred EcHHHHHHHh
Confidence 9999987765
No 67
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.22 E-value=9e-11 Score=120.95 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcC-CCCceEEE
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG-LTSFKRHQ 526 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~-~~plK~y~ 526 (846)
++++++.++++|..+||.|+.||.|++.+.+.. .+...+.++.+.+.+++..+|||++|+++++.++.+. ..|.|+|+
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 577888999999999999999999999876543 3333334556667788999999999999999998763 56899999
Q ss_pred eeceeecCCCCC--CCccceEecccccc---c------HHHHHHHHHHHHHcCCC-ceEE
Q 003117 527 IAKVYRRDNPSK--GRYREFYQCDFDIA---D------FEVVKILTELLNELDIG-DYEI 574 (846)
Q Consensus 527 ig~VfR~e~p~~--Gr~REf~Q~g~ei~---D------aEvI~l~~eil~~lgl~-~~~i 574 (846)
+|+|||.|.... .|.+||.|.+++++ + .|++.++.++++.+|+. ++.+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~ 140 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVF 140 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 999999875443 57899999999998 2 67888999999999862 3444
No 68
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8e-11 Score=129.22 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=101.4
Q ss_pred ceeecchHHHHHHHHHHhhhh-----hhh--ccc--cCcceEEEEEcCC---cHHHHHHHHHHHHHCCCeEEEEc-CCCH
Q 003117 724 AVGVSLGIERVFTIMEQIQKE-----RNQ--IIR--ATETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV-HKKV 790 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~-----~~~--~~~--~~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~-~~~l 790 (846)
.+--|+|+-||+..|.++.-. ... ..+ .+|++|.|.+.+. ..+...++.+.|+++||++.+++ ..++
T Consensus 459 VIEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SI 538 (599)
T KOG2298|consen 459 VIEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSI 538 (599)
T ss_pred cccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCCCcH
Confidence 445788999999998875211 100 112 2789999999885 45778899999999999999988 4689
Q ss_pred HHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 791 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 791 ~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++.+...++.|+||-|.|..+.+++++|++|++++..|..++++++...+.+.+
T Consensus 539 GrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~~~~ 592 (599)
T KOG2298|consen 539 GRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLIKYI 592 (599)
T ss_pred hhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887764
No 69
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.17 E-value=1.8e-10 Score=118.96 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=86.0
Q ss_pred CcceEEEEEcCC-------cHHHHHHHHHHHHHCCCeEEEEc-CC-CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEE
Q 003117 752 TETQVLVGLLGD-------KLPLAAELVSELWNAKVKAEYMV-HK-KVMKLIDRARESKIPWMVIVGERELNEGIVKLKN 822 (846)
Q Consensus 752 ~~~dVlV~~~~~-------~~~~a~~la~~Lr~~GI~ael~~-~~-~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~ 822 (846)
+|+||+|++++. ...++.++++.||++||+|++++ +. ++++++++|+..|+|++|+||++|+++++|+|++
T Consensus 9 AP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~V~v~~ 88 (202)
T cd00862 9 APIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKNTVVIVR 88 (202)
T ss_pred cCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhCCEEEEEE
Confidence 789999999863 35789999999999999999998 55 8999999999999999999999999999999999
Q ss_pred CCCCceeeechHHHHHHHHHHhh
Q 003117 823 IDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 823 l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+.++++..++++++++.+.+.+.
T Consensus 89 Rd~~ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 89 RDTGEKKTVPLAELVEKVPELLD 111 (202)
T ss_pred ecCCcceEEEHHHHHHHHHHHHH
Confidence 99999999999999988876553
No 70
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.17 E-value=2.3e-10 Score=125.68 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHh-hhhhhhcccc--CcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCC
Q 003117 728 SLGIERVFTIMEQI-QKERNQIIRA--TETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKI 802 (846)
Q Consensus 728 sigleRL~~~L~~~-~~~~~~~~~~--~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi 802 (846)
-+.+||++.++..+ ..+....||+ +|.+|+|++.++ ....++++++.||++|++|++++ ..++++++++|++.|+
T Consensus 246 ~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~Ga 325 (387)
T PRK14938 246 YVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWI 325 (387)
T ss_pred EEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCC
Confidence 46788987665432 2222333444 689999999987 66889999999999999999998 5689999999999999
Q ss_pred CEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHH
Q 003117 803 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 843 (846)
Q Consensus 803 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~ 843 (846)
+|+++||++|+++++|+||++.++++..++++++.+.++++
T Consensus 326 PfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk~ 366 (387)
T PRK14938 326 PFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKRA 366 (387)
T ss_pred CEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999888753
No 71
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.15 E-value=4e-10 Score=107.83 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=91.9
Q ss_pred HHhhhhhhhcccc--CcceEEEEEcCC----cHHHHHHHHHHHHHCCCeEEEEc-CC---CHHHHHHHHHhcCCCEEEEE
Q 003117 739 EQIQKERNQIIRA--TETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMV-HK---KVMKLIDRARESKIPWMVIV 808 (846)
Q Consensus 739 ~~~~~~~~~~~~~--~~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~-~~---~l~~~~~~A~~~gi~~iviI 808 (846)
+..+.+.+..||+ +|++|.|++... ..+.+.++++.|+++|+++.++. +. +++++|++++..|+||.|+|
T Consensus 11 E~~~d~~Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~I 90 (128)
T cd02426 11 KKGRQRQVLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLI 90 (128)
T ss_pred hcCCCCcEEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEE
Confidence 3333344566877 899999999842 45778899999999999998887 33 79999999999999999999
Q ss_pred cCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 809 GERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 809 g~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
|++.+++|+|+++++.++++..|+++++++++.+.+.
T Consensus 91 G~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 91 SEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred CCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999987653
No 72
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.11 E-value=3.5e-10 Score=129.05 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=113.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHH
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
..|++-|.|.++.+++.+.+.+.+.+.++||.+|.||.|.+.++|.. +|+. .++||++.| +.++|+|....|+
T Consensus 162 G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~ 237 (418)
T TIGR00414 162 GSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVPL 237 (418)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHHH
Confidence 45688899999999999999999999999999999999999998854 6664 367999854 4589999999999
Q ss_pred HHHHHHc----CCCCceEEEeeceeecCCCC-----CC--CccceEecccccc----c-----HHHHHHHHHHHHHcCCC
Q 003117 511 ARYVAMN----GLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIA----D-----FEVVKILTELLNELDIG 570 (846)
Q Consensus 511 aR~~a~~----~~~plK~y~ig~VfR~e~p~-----~G--r~REf~Q~g~ei~----D-----aEvI~l~~eil~~lgl~ 570 (846)
+-+++.. +.+|+|+|+++++||+|... .| |.|||.+.+..+| + .+++..+.++++.||+.
T Consensus 238 ~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 238 TNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9887753 46899999999999999632 23 9999999999888 1 34677888999999995
Q ss_pred ceEE
Q 003117 571 DYEI 574 (846)
Q Consensus 571 ~~~i 574 (846)
|.+
T Consensus 318 -~r~ 320 (418)
T TIGR00414 318 -YRV 320 (418)
T ss_pred -eEE
Confidence 543
No 73
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.09 E-value=9.4e-10 Score=98.78 Aligned_cols=88 Identities=27% Similarity=0.371 Sum_probs=79.7
Q ss_pred cceEEEEEcCC----cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCc
Q 003117 753 ETQVLVGLLGD----KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ 827 (846)
Q Consensus 753 ~~dVlV~~~~~----~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~ 827 (846)
|.+|+|++.++ ....++++++.||+.|+++++++. .++++++++|++.|++|++++|++|+.++++.+|++.+++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 46888888775 467899999999999999999884 6799999999999999999999999999999999999999
Q ss_pred eeeechHHHHHHH
Q 003117 828 EEVISRSNFVEEI 840 (846)
Q Consensus 828 e~~v~~~elv~~L 840 (846)
+..++++++++.+
T Consensus 81 ~~~~~~~~~~~~i 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred eeEEEHHHHHhhc
Confidence 9999999987654
No 74
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.05 E-value=3.4e-09 Score=111.55 Aligned_cols=198 Identities=15% Similarity=-0.004 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHhhhcCCccccccccccCcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003117 72 SRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIID 151 (846)
Q Consensus 72 vRa~m~~rln~l~~G~SG~~~~~~~l~~~~~~g~~~~~~~p~~l~~keg~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~ 151 (846)
+|++|.+|+|++..| +...|........-+.+..+ +..+++ ..+...++.+.+.+..++.++.+++....
T Consensus 1 ~~~~~~i~~a~~~~~------i~~~L~~~~~~~~~~~~~~~--~~h~g~--s~~d~~~t~~~~~~~~~l~~l~~~l~~~~ 70 (231)
T cd01594 1 VRADLLVELAAALAL------VEEVLAGRAGELAGGLHGSA--LVHKGR--SSNDIGTTALRLALRDALDDLLPLLKALI 70 (231)
T ss_pred CHHHHHHHHHHHHHH------HHHHHHHHHHHHhccccCCC--CCCCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999 22222211111111122211 566777 22223356788888889999999999999
Q ss_pred HHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCCCCcccccchhhHhHHHHHHHHHHHHHHHHH
Q 003117 152 AVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVE 231 (846)
Q Consensus 152 ~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~E 231 (846)
.+.+...|+.++++.|+++... ...| .+|+|+|||.||++|..+|.+..+
T Consensus 71 ~~l~~~a~~~~~~~~~~~th~q-~A~p----------------------~t~g~~~~~~~~~l~~~~~rL~~~------- 120 (231)
T cd01594 71 DALALKAEAHKGTVMPGRTHLQ-DAQP----------------------VTLGYELRAWAQVLGRDLERLEEA------- 120 (231)
T ss_pred HHHHHHHHHhcCCEeecccccc-cCcc----------------------ccHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999998532 3333 238999999999999999999999
Q ss_pred HhcCcccCccccccchHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCcccccCCCCCCc---------------cc
Q 003117 232 LNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDN---------------LR 296 (846)
Q Consensus 232 lNs~~d~~~~~~~~~~~~~~d~l~~a~~~l~~~serR~~~l~~~~~~~gLp~fL~~~~~~~~~---------------~~ 296 (846)
.+.-.+|.|+++++.+++++++++.++.++..+ ..|+|+... ++.+. ++
T Consensus 121 --------------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~-~~~~~~~~~-~gSS~mp~k~Np~~~e~~~~~~ 184 (231)
T cd01594 121 --------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE-LGEPFLPGQ-PGSSIMPQKVNPVAAELVRGLA 184 (231)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-eeCccCCCC-CCCcCCCCCCCCHHHHHHHHHH
Confidence 456778999999999999999999999998765 567776321 11111 11
Q ss_pred c------ccccccC-----CCcccccccchHHHHHHHHHHH
Q 003117 297 K------TYKLVLD-----ANFEEDYVKFLHEANVLLGMVW 326 (846)
Q Consensus 297 ~------~ds~~~s-----~~~qedhvsm~~~~~~~~~~~~ 326 (846)
. ....+++ .. .+|+.+++....+.+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~ 224 (231)
T cd01594 185 GLVIGNLVAVLTALKGGPERD-NEDSPSMREILADSLLLLI 224 (231)
T ss_pred HHHHhhHHHHHHHHhcccccc-cccCHHHHHHHHHHHHHHH
Confidence 1 1233333 34 7999999998777765543
No 75
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.04 E-value=9.9e-10 Score=125.66 Aligned_cols=138 Identities=16% Similarity=0.248 Sum_probs=115.2
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHH-HCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~-~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
...|++-|.|.++.+++.+.+.+.+... ++||++|.||.|.+.++|.. +|+. .++||++. ++.+.|+|....
T Consensus 158 ~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~-~G~~~~f~~~ly~i~---~~~~~L~pTsE~ 233 (425)
T PRK05431 158 SGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYG-TGQLPKFEEDLYKIE---DDDLYLIPTAEV 233 (425)
T ss_pred CCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhh-cCccccchhhceEec---CCCEEEEeCCcH
Confidence 4457899999999999999999988887 99999999999999998865 5764 36799985 367899999999
Q ss_pred HHHHHHHHc----CCCCceEEEeeceeecCCCC-----CC--CccceEecccccc----c-----HHHHHHHHHHHHHcC
Q 003117 509 PFARYVAMN----GLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIA----D-----FEVVKILTELLNELD 568 (846)
Q Consensus 509 ~iaR~~a~~----~~~plK~y~ig~VfR~e~p~-----~G--r~REf~Q~g~ei~----D-----aEvI~l~~eil~~lg 568 (846)
+++.+++.. +.+|+|+|+++++||+|... .| |.|||.+.+.++| + .+++.++.++++.||
T Consensus 234 ~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lg 313 (425)
T PRK05431 234 PLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLE 313 (425)
T ss_pred HHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999888753 46899999999999999632 34 8999999999998 1 246778899999999
Q ss_pred CCceEEE
Q 003117 569 IGDYEIK 575 (846)
Q Consensus 569 l~~~~i~ 575 (846)
+. |.+.
T Consensus 314 lp-yr~v 319 (425)
T PRK05431 314 LP-YRVV 319 (425)
T ss_pred Cc-EEEE
Confidence 95 6553
No 76
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=98.93 E-value=6.7e-09 Score=91.92 Aligned_cols=87 Identities=36% Similarity=0.504 Sum_probs=78.9
Q ss_pred ceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeee
Q 003117 754 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 831 (846)
Q Consensus 754 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v 831 (846)
++|+|++.++ .+..++++++.||+.|++|+++.. .++++++++|...|+++++++|+++..+++++++++.++++..+
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 81 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEE
Confidence 4789999887 678899999999999999999875 57999999999999999999999888889999999999999999
Q ss_pred chHHHHHHH
Q 003117 832 SRSNFVEEI 840 (846)
Q Consensus 832 ~~~elv~~L 840 (846)
+++++++.+
T Consensus 82 ~~~~~~~~~ 90 (91)
T cd00859 82 ALDELVEEL 90 (91)
T ss_pred eHHHHHHHh
Confidence 999887665
No 77
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.92 E-value=2.1e-09 Score=118.06 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc-CCCCeEeeC--CCChHHHHHHHHHcCCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLR--YDLTVPFARYVAMNGLT 520 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D-~~G~~l~LR--pDlT~~iaR~~a~~~~~ 520 (846)
-.+++..+.+.+++.|.++||.||.||+|++........ ..-+.-|.+.| ..|+.+.|| |+++ +.|.++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~-~~f~~~y~~~~~~~~~~~~L~~SPe~~--~kr~la~~--- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHL-VPFETRFVGPGASQGKTLWLMTSPEYH--MKRLLAAG--- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccC-CceeeeeccccccCCcceEEecCHHHH--HHHHhhcc---
Confidence 457889999999999999999999999998765321100 00011144445 568899999 9998 77777644
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
.-|+||+|+|||+|.+..+|..||+|++++.+ | .+++.++.+++..
T Consensus 78 ~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~ 126 (306)
T PRK09350 78 SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 126 (306)
T ss_pred ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHH
Confidence 23999999999999887889999999999976 4 5667766666654
No 78
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.4e-07 Score=102.98 Aligned_cols=324 Identities=19% Similarity=0.217 Sum_probs=200.8
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCC---CcCceEEEEcCCC----CeEeeC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE---DSKLIYDLADQGG----ELCSLR 503 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~---~~~~~y~~~D~~G----~~l~LR 503 (846)
+...+|++-+-|-.+.+|+.|.+.+...+++-|-+....|+|-+...+.....+ ...++-.+.-.++ +.+++|
T Consensus 84 YydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiR 163 (551)
T KOG4163|consen 84 YYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIR 163 (551)
T ss_pred eecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeec
Confidence 566789999999999999999999999999999999999999998877543322 1355555433332 358999
Q ss_pred CC----ChHHHHHHHHHcCCCCceEEEeeceeecC--CCC-CCCccceE-ecccccc------cHHHHHHH---HHHHHH
Q 003117 504 YD----LTVPFARYVAMNGLTSFKRHQIAKVYRRD--NPS-KGRYREFY-QCDFDIA------DFEVVKIL---TELLNE 566 (846)
Q Consensus 504 pD----lT~~iaR~~a~~~~~plK~y~ig~VfR~e--~p~-~Gr~REf~-Q~g~ei~------DaEvI~l~---~eil~~ 566 (846)
|. |-+.++.++-+++.+|+|+-+..+|-|.| .|+ +-|.|||. |-|--.| +-||+.++ ..++.+
T Consensus 164 PTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~e 243 (551)
T KOG4163|consen 164 PTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEE 243 (551)
T ss_pred cCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHh
Confidence 95 56788999999999999999999999998 344 45999996 6665555 44554432 222222
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
+ +-+|..+ -.|..-++ + .|-+.+ ..++.|+--+|.
T Consensus 244 l---------------------lAiPVvk----------GrKse~Ek----F---aGgd~T--ttvEa~i~~~Gr----- 278 (551)
T KOG4163|consen 244 L---------------------LAIPVVK----------GRKSEKEK----F---AGGDYT--TTVEAFIPCSGR----- 278 (551)
T ss_pred h---------------------hcccccc----------Cccchhhh----c---cCCcce--EEEeeeeccccc-----
Confidence 1 0111100 00000000 0 000000 000111100000
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEE-ecCC-CCCCccccCCCcccCCCccchhhhhhCCCCccc
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVF-DLSL-ARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPA 724 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~-Dlsl-~rgl~YYtG~g~ia~GGRYD~Li~~fg~~~~pA 724 (846)
. .+. ..-++|.+=+. +.++ +.| |++. .+-+-|-+. . | -..-.
T Consensus 279 --------g-iQg----aTSH~LGQNFS--kmF~----i~~ed~~~g~~~fv~QnS---W-------------g-~sTRt 322 (551)
T KOG4163|consen 279 --------G-IQG----ATSHHLGQNFS--KMFE----IVFEDPGEGEKEFVWQNS---W-------------G-LSTRT 322 (551)
T ss_pred --------c-ccc----cchhhhhHHHH--Hhhc----eeecCCCccchhheeecc---c-------------c-cccce
Confidence 0 000 01133433322 1122 233 3311 111112111 0 1 01113
Q ss_pred eeecchHHHHHHHHHHhhhhhhhcc--ccCcceEEEEEcCC-----------cHHHHHHHHHHHHHCCCeEEEEcC--CC
Q 003117 725 VGVSLGIERVFTIMEQIQKERNQII--RATETQVLVGLLGD-----------KLPLAAELVSELWNAKVKAEYMVH--KK 789 (846)
Q Consensus 725 VGfsigleRL~~~L~~~~~~~~~~~--~~~~~dVlV~~~~~-----------~~~~a~~la~~Lr~~GI~ael~~~--~~ 789 (846)
+|..+-+ ++.+.+... +.+++||+|++.+- ....+-.+...|-..||||+.|+. -+
T Consensus 323 iGvmiM~---------HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnyt 393 (551)
T KOG4163|consen 323 IGVMIMT---------HGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYT 393 (551)
T ss_pred eeEEEEE---------ecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCC
Confidence 3322111 122222222 33789999999872 234566788999999999999984 36
Q ss_pred HHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 790 VMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 790 l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++-+|...+..|+|..+-||++.++++.|.+-.+++++..+|++++|+..+++.|
T Consensus 394 pGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elL 448 (551)
T KOG4163|consen 394 PGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELL 448 (551)
T ss_pred CCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999889999999999999999987765
No 79
>PLN02678 seryl-tRNA synthetase
Probab=98.73 E-value=4.2e-08 Score=112.05 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=105.2
Q ss_pred ccCh-hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCC---CChHHHH
Q 003117 439 DFAK-EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRY---DLTVPFA 511 (846)
Q Consensus 439 D~lp-~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRp---DlT~~ia 511 (846)
.|++ .++.+.+.+.+.+.+...++||.+|.||.|...++|.. +|+. .++||++.+.+.+.+.+++ .+|.-++
T Consensus 167 y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~-sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~ 245 (448)
T PLN02678 167 YYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAK-CAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHR 245 (448)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhh-cCCcccchhcCceecCCCCceeeecccccccChHHh
Confidence 3454 89999999999999999999999999999999998865 6764 3679999654445666663 3554444
Q ss_pred HHHHHcCCCCceEEEeeceeecCCCC-----CC--CccceEecccccc----c-------HHHHHHHHHHHHHcCCCceE
Q 003117 512 RYVAMNGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIA----D-------FEVVKILTELLNELDIGDYE 573 (846)
Q Consensus 512 R~~a~~~~~plK~y~ig~VfR~e~p~-----~G--r~REf~Q~g~ei~----D-------aEvI~l~~eil~~lgl~~~~ 573 (846)
-.......+|+|++.+++|||+|... .| |.|+|++++.-.+ + .|++..+.++++.||+ +|.
T Consensus 246 ~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~l-pyr 324 (448)
T PLN02678 246 GDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGI-PYQ 324 (448)
T ss_pred cccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCC-CeE
Confidence 33333456899999999999999753 23 8899999988666 2 2578889999999999 476
Q ss_pred EEEcch
Q 003117 574 IKLNHR 579 (846)
Q Consensus 574 i~Inh~ 579 (846)
+..-.+
T Consensus 325 vv~~~s 330 (448)
T PLN02678 325 VVSIVS 330 (448)
T ss_pred EEeecc
Confidence 644333
No 80
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.72 E-value=4.4e-08 Score=105.65 Aligned_cols=110 Identities=20% Similarity=0.275 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc-CCCCeEeeC--CCChHHHHHHHHHcCCCCc
Q 003117 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLR--YDLTVPFARYVAMNGLTSF 522 (846)
Q Consensus 446 ~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D-~~G~~l~LR--pDlT~~iaR~~a~~~~~pl 522 (846)
+++..+.+.+++.|.++||.||.||+++... ++.. .+.|.+.. ..|+.+.|+ |+++ ..|.++.. .-
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~~~-~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~---~~ 70 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GGAG-ARPFLVKYNALGLDYYLRISPQLF--KKRLMVGG---LD 70 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cccc-cceEEeeecCCCCcEEeecCHHHH--HHHHHhcC---CC
Confidence 4678889999999999999999999998542 2222 24677632 257888999 7776 45555443 22
Q ss_pred eEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
|+|+|++|||+|.+..+|.+||+|+++|.. | -|++.++.++++.
T Consensus 71 ~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~ 117 (269)
T cd00669 71 RVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRH 117 (269)
T ss_pred cEEEEecceeCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHH
Confidence 999999999999888899999999999976 3 4566666655543
No 81
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=98.67 E-value=7e-08 Score=111.55 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=109.0
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHH-HHHCCCeeecCCccccccccccccCCC---cCceEEEEcC------------
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEV-FKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ------------ 495 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~v-f~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~------------ 495 (846)
-..+|++-|.|.+..+++.+++.+++. ++++||+++.+|.|.+.+.|.. +|+. .++||.+...
T Consensus 210 ~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~~~~~~~ 288 (517)
T PRK00960 210 FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEYFEEFVD 288 (517)
T ss_pred cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeeccccccccccchhh
Confidence 346899999999999999999999875 7889999999999999998865 4654 3678877421
Q ss_pred -----------------CCCeEeeCCCChHHHHHHHHH----cCCCCceEEE-eeceeecCCC-CC--CCccceEecccc
Q 003117 496 -----------------GGELCSLRYDLTVPFARYVAM----NGLTSFKRHQ-IAKVYRRDNP-SK--GRYREFYQCDFD 550 (846)
Q Consensus 496 -----------------~G~~l~LRpDlT~~iaR~~a~----~~~~plK~y~-ig~VfR~e~p-~~--Gr~REf~Q~g~e 550 (846)
....++|||..|+++.-+++. +..+|+|++. .|+|||+|.. -. -|.|||.|.+..
T Consensus 289 ~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h 368 (517)
T PRK00960 289 EMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV 368 (517)
T ss_pred hccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE
Confidence 134679999999999877763 3467999998 6799999952 12 399999999999
Q ss_pred cc------cHH---HHHHHHHHHHHcCCC
Q 003117 551 IA------DFE---VVKILTELLNELDIG 570 (846)
Q Consensus 551 i~------DaE---vI~l~~eil~~lgl~ 570 (846)
++ ..| .+..+.++++.||+.
T Consensus 369 ~f~tpEqs~ee~e~ll~~~e~i~~~LgLp 397 (517)
T PRK00960 369 WLGTPEQVEEIRDELLKYAHILAEKLDLE 397 (517)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88 222 455667778888884
No 82
>PLN02320 seryl-tRNA synthetase
Probab=98.52 E-value=3.4e-07 Score=105.34 Aligned_cols=142 Identities=14% Similarity=0.234 Sum_probs=105.9
Q ss_pred Ccccc-cChhHHHHH-HHHHHHHHHHHHHCCCeeecCCccccccccccccCCCc---C-ceEEEEcCCCCeEeeCCCChH
Q 003117 435 KGTRD-FAKEQMAVR-EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS---K-LIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 435 ~G~~D-~lp~~~~~~-~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~---~-~~y~~~D~~G~~l~LRpDlT~ 508 (846)
.|.+. |+|.+.... +.+.+.+.+...++||++|.||.|...++|.. +|+.. . .+|++- ++.++|-|..-.
T Consensus 221 sG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~ie---~ed~~Li~TaE~ 296 (502)
T PLN02320 221 SGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSID---GSDQCLIGTAEI 296 (502)
T ss_pred CCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEEC---CCceEEeecccc
Confidence 48898 478767644 78999999999999999999999999998864 67542 2 567652 456778554333
Q ss_pred HHHHHHH----HcCCCCceEEEeeceeecCCCCC-----C--CccceEecccccc------c---HHHHHHHHHHHHHcC
Q 003117 509 PFARYVA----MNGLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIA------D---FEVVKILTELLNELD 568 (846)
Q Consensus 509 ~iaR~~a----~~~~~plK~y~ig~VfR~e~p~~-----G--r~REf~Q~g~ei~------D---aEvI~l~~eil~~lg 568 (846)
|+.-... ....+|+|++.+++|||+|.... | |.++|.+.+..+| + .|++..+.++++.||
T Consensus 297 Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~Lg 376 (502)
T PLN02320 297 PVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLG 376 (502)
T ss_pred cccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3322221 24568999999999999997632 3 8999999999998 2 347788999999999
Q ss_pred CCceEEEEcchh
Q 003117 569 IGDYEIKLNHRL 580 (846)
Q Consensus 569 l~~~~i~Inh~~ 580 (846)
+....+.+...+
T Consensus 377 Lpyrvv~l~tgD 388 (502)
T PLN02320 377 LHFKTLDMATAD 388 (502)
T ss_pred CCeEEEEecCCc
Confidence 965666666554
No 83
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.48 E-value=1.1e-06 Score=100.35 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=119.9
Q ss_pred cchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHH-HHHHHCCCeeecCCccccccccccccCCC--
Q 003117 409 PEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIIT-EVFKRHGAMALDTPVFEMRETLMGKYGED-- 485 (846)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~-~vf~~~G~~eI~tP~le~~e~~~~~~g~~-- 485 (846)
-+|..+..++. +. ..-..+|++-|.|.++.+++.+.+.+. ..++++||+++.+|.|.+.+.+.. .|+.
T Consensus 195 ~~h~el~~k~g-li-------dk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~g 265 (520)
T TIGR00415 195 GDPTDEAEKLG-WV-------KKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEG 265 (520)
T ss_pred CCHHHHHHHCC-Ce-------eEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCC
Confidence 45666666542 11 124568899999999999999999996 577899999999999999998754 3543
Q ss_pred -cCceEEEEcC-----------------------------CCCeEeeCCCChHHHHHHHHH----cCCCCceEEE-eece
Q 003117 486 -SKLIYDLADQ-----------------------------GGELCSLRYDLTVPFARYVAM----NGLTSFKRHQ-IAKV 530 (846)
Q Consensus 486 -~~~~y~~~D~-----------------------------~G~~l~LRpDlT~~iaR~~a~----~~~~plK~y~-ig~V 530 (846)
.+++|.+... ....++|+|..+.|+.-+++. +..+|+|+|+ .++|
T Consensus 266 F~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~C 345 (520)
T TIGR00415 266 LPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWT 345 (520)
T ss_pred CchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCe
Confidence 3678876311 223689999999999877763 3467999999 5689
Q ss_pred eecCCC-CC--CCccceEecccccc----c-----HHHHHHHHHHHHHcCCCceEEEEcch
Q 003117 531 YRRDNP-SK--GRYREFYQCDFDIA----D-----FEVVKILTELLNELDIGDYEIKLNHR 579 (846)
Q Consensus 531 fR~e~p-~~--Gr~REf~Q~g~ei~----D-----aEvI~l~~eil~~lgl~~~~i~Inh~ 579 (846)
||+|.. .. -|.+||.+.....+ + .+.+..+.++++.|++ +|.+..++-
T Consensus 346 FR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~L-pyrv~~adD 405 (520)
T TIGR00415 346 YRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDL-EWWTEVGDD 405 (520)
T ss_pred EeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEeecCC
Confidence 999963 23 38999998887776 2 2356777888889998 577776553
No 84
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.30 E-value=3.3e-06 Score=89.83 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccccccccC--C-----CcCceEEEEcCC---CCeEeeCCCChHHHHHHHHH
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--E-----DSKLIYDLADQG---GELCSLRYDLTVPFARYVAM 516 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g--~-----~~~~~y~~~D~~---G~~l~LRpDlT~~iaR~~a~ 516 (846)
-..++.+.++++|...||+++..|.++.........+ . +....|-+.++. .+..+||.-+|+..+|++..
T Consensus 18 p~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~ 97 (247)
T PF01409_consen 18 PITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNK 97 (247)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHH
Confidence 3467778899999999999999999976432222222 1 123456665554 47889999999999999965
Q ss_pred cCCCCceEEEeeceeecCCCCCCCccceEecccccc----c-HHHHHHHHHHHHHc-CCC
Q 003117 517 NGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----D-FEVVKILTELLNEL-DIG 570 (846)
Q Consensus 517 ~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~l-gl~ 570 (846)
+...|.|+|++|+|||+|.....+..+|+|.+.=++ + .++..++.++++.| |.+
T Consensus 98 ~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 98 HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGID 157 (247)
T ss_dssp TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTT
T ss_pred hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcc
Confidence 667899999999999999877778889999988666 2 45666788888888 875
No 85
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.28 E-value=3.6e-06 Score=91.37 Aligned_cols=110 Identities=18% Similarity=0.351 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--CCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 446 ~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
++|.++...+++.|.++||.||.||+|..... . |. .. |.+.. ..+..+.|+--.-...=|.++. ---|
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g~--~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~---g~~~ 71 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP--E--GA--RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVS---GFDR 71 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--CC--CC-ceeccccCCCceeecccCHHHHHHHHHhc---CcCc
Confidence 46788899999999999999999999974332 1 11 11 32211 1344444553322222222221 1359
Q ss_pred EEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
+||+|++||+|+++.+|..||+|+++|.. | .+++.++.+++.
T Consensus 72 v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~ 116 (280)
T cd00777 72 YFQIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLK 116 (280)
T ss_pred EEEeccceeCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999986 4 456666655554
No 86
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.25 E-value=1.7e-05 Score=87.29 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccC--C-----CcCceEEEEcCCCCeEeeCCCChHHHHHHH
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--E-----DSKLIYDLADQGGELCSLRYDLTVPFARYV 514 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g--~-----~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~ 514 (846)
+...--...+.+.++++|...||+++.+|.++....-....+ . +....|.+ .+..+||.-.++..+|.+
T Consensus 104 ~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~lLRThTSp~qir~L 179 (339)
T PRK00488 104 LGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGLLLRTHTSPVQIRTM 179 (339)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCceeeccCcHHHHHHH
Confidence 333445577888899999999999999999986432111111 1 12345666 234789999999999999
Q ss_pred HHcCCCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHc
Q 003117 515 AMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNEL 567 (846)
Q Consensus 515 a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~l 567 (846)
.. ...|+|++++|+|||++.....|..+|+|.+.=++ -+++..++..+++.+
T Consensus 180 ~~-~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~ 236 (339)
T PRK00488 180 EK-QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAF 236 (339)
T ss_pred Hh-cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 87 56799999999999998767778999999988776 366777778888876
No 87
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.19 E-value=1.9e-05 Score=82.75 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCeeecCCcccccc-ccccccCCCcC-------ceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCC
Q 003117 449 EKAFSIITEVFKRHGAMALDTPVFEMRE-TLMGKYGEDSK-------LIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 449 ~~i~~~l~~vf~~~G~~eI~tP~le~~e-~~~~~~g~~~~-------~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
+.+++.+++++..+||.|+.|++|...+ .+. ..+.... ..+++.++- .-+||+.+++++.+.++.| ..
T Consensus 4 ~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-~~ 79 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFD-ALNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-KP 79 (218)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccchhhh-hcCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc-CC
Confidence 5667778999999999999999997762 221 1221110 234555544 6789999999999999999 77
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHcC
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNELD 568 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lg 568 (846)
+.|+|++|+|||.++....+..||.+.++.+. ..|+..++..+++.+|
T Consensus 80 ~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 80 PIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred CeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999987543344459999887765 3456667777888887
No 88
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.4e-05 Score=86.96 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHH-HHHHHHcCCCCc
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPF-ARYVAMNGLTSF 522 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~i-aR~~a~~~~~pl 522 (846)
-++++..+...+++.|...||.+|.||.+-..++ +...++|++.-- ++..-|-- .+++ ...++.. --
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~------EGg~elF~v~yf-~~~a~Ltq--S~QLyke~~~~a---l~ 200 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT------EGGGELFKVDYF-DKEAYLTQ--SPQLYKEALAAA---LE 200 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC------CCCceeEEEeec-CcceEEec--CHHHHHHHHHHH---hC
Confidence 4688889999999999999999999999875442 223457766321 11111110 0111 1111111 34
Q ss_pred eEEEeeceeecCCCCCC-CccceEecccccc---cHHHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDIA---DFEVVKILTELLNE 566 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~---DaEvI~l~~eil~~ 566 (846)
|.|+||++||-|.+..- |.-||||.|+|+. -.|++.++.+.++.
T Consensus 201 rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~ 248 (435)
T COG0017 201 RVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKY 248 (435)
T ss_pred ceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHH
Confidence 99999999999987655 5899999999996 36777777666654
No 89
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.05 E-value=1.7e-05 Score=87.90 Aligned_cols=114 Identities=18% Similarity=0.316 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.-.+++..+.+.++++|.++||.+|.||+++.... +...+.|.+ +--|+.+-|+--.-...=+.++. -
T Consensus 21 ~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~------e~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~----~ 89 (322)
T cd00776 21 QAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT------EGGAELFKV-SYFGKPAYLAQSPQLYKEMLIAA----L 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC------CccCCcccc-ccCCCcceecCCHHHHHHHHHHh----h
Confidence 345688899999999999999999999999987431 122234443 33456666765544443344432 3
Q ss_pred ceEEEeeceeecCCCCC-CCccceEecccccc---c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSK-GRYREFYQCDFDIA---D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~---D-aEvI~l~~eil~~ 566 (846)
-|+|+||+|||.|.+.. -|.-||+|+++|.. | .+++.++.++++.
T Consensus 90 ~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~ 139 (322)
T cd00776 90 ERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKY 139 (322)
T ss_pred hhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHH
Confidence 58999999999997654 46799999999986 3 4566666666654
No 90
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.05 E-value=2.9e-05 Score=85.01 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCcccccc-ccccccC--C-----CcCceEEEEcCCCCeEeeCCCChHHHHHHHH
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRE-TLMGKYG--E-----DSKLIYDLADQGGELCSLRYDLTVPFARYVA 515 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e-~~~~~~g--~-----~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a 515 (846)
...-...+.+.++++|...||.|+.+|.|+... .+.. .+ . +....|.+. +..+||+.+++...|.+.
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~-l~~~~~hpar~~~d~~~l~----d~~vLRtsl~p~ll~~l~ 144 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDA-LNIPQDHPARDMQDTFYIK----DRLLLRTHTTAVQLRTME 144 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHH-hCCCCCCcchhhccceeec----CCcceecccHHHHHHHHH
Confidence 334456677779999999999999999998752 2211 11 1 111345554 356799999999999999
Q ss_pred HcCCCCceEEEeeceeecCCCCCCCccceEecccccc----c-HHHHHHHHHHHHHcCCC
Q 003117 516 MNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----D-FEVVKILTELLNELDIG 570 (846)
Q Consensus 516 ~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~lgl~ 570 (846)
.|...|+|+|++|+|||++.....+..||+|+++-++ | .++..++..+++.++++
T Consensus 145 ~N~~~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 145 ENEKPPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred hcCCCCceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 8755889999999999987644344459999877665 2 45666777777877764
No 91
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.99 E-value=2.3e-05 Score=86.22 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc----CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD----QGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 446 ~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D----~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
++|..+.+.++++|.++||.||.||+|+.... ++...+.|.+.- .-++...|+----...=|.++.. -
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~-----~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g---~ 73 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV-----TDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG---S 73 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC-----CCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc---C
Confidence 57889999999999999999999999986531 111223454321 11233444433322333444422 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|+|+||++||.|....-|.-||+|++++.+ | .+++.++.+++..
T Consensus 74 ~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~ 121 (304)
T TIGR00462 74 GPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQE 121 (304)
T ss_pred CCEEEEcCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5999999999999875557889999999876 3 4566666655543
No 92
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.92 E-value=5.4e-05 Score=89.49 Aligned_cols=112 Identities=19% Similarity=0.362 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--~~G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
.-.++|..+...+++.|..+||.||+||+|..... +...+ |.+.. ..|..+.|+--.-...-+.++..
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~------eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l~v~G--- 205 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP------EGARD-YLVPSRVHKGEFYALPQSPQLFKQLLMVSG--- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC------CCCcc-eeeeeecCCCceeecCCCHHHHHHHHHhcc---
Confidence 34578889999999999999999999999975321 11111 22211 25666667643222222222211
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHH
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELL 564 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil 564 (846)
--|.|+||++||+|..+..|.-||+|+|+|.. | .+++.++.+++
T Consensus 206 ~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li 252 (583)
T TIGR00459 206 VDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLV 252 (583)
T ss_pred cCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHH
Confidence 25999999999999888888899999999976 3 34555544443
No 93
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.82 E-value=0.00013 Score=81.65 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE----cCCCCeEeeCCCChHHHHHHHHHcCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA----DQGGELCSLRYDLTVPFARYVAMNGL 519 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~----D~~G~~l~LRpDlT~~iaR~~a~~~~ 519 (846)
-.+++..+.+.+++.|...||.||.||++..... +...+.|.+. +.-|+.+-|+.-.-...=+.++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~------~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g-- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC------EGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG-- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS------SSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc------CccccccccccchhhhcccceecCcChHHHHhhhcccc--
Confidence 4578888999999999999999999999876541 2233467775 134566778776655555555532
Q ss_pred CCceEEEeeceeecCCCCCC-CccceEecccccc---cHHHHHHHHHHHHH
Q 003117 520 TSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA---DFEVVKILTELLNE 566 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~---DaEvI~l~~eil~~ 566 (846)
--|.|+||++||.|..... +.-||+|+++|.. ..+++.++.++++.
T Consensus 93 -~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~ 142 (335)
T PF00152_consen 93 -LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKY 142 (335)
T ss_dssp -HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHH
T ss_pred -chhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHH
Confidence 3499999999999977444 5679999999986 23366655555544
No 94
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.78 E-value=0.00012 Score=87.27 Aligned_cols=113 Identities=19% Similarity=0.341 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--CCCCeEeeCCCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--~~G~~l~LRpDlT~~iaR~~a~~~~ 519 (846)
-.-.++|..+...+++.|...||.||+||+|..... +...+ |.... ..|..+.|+--.-...-+.++.
T Consensus 138 ~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~------ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~--- 207 (588)
T PRK00476 138 QKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP------EGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVA--- 207 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC------CCCcc-ceecccccCCceeecCCCHHHHHHHHHhc---
Confidence 345688889999999999999999999999975431 11111 32211 2466666663322222222221
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHH
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELL 564 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil 564 (846)
---|.|+||+|||+|.....|.-||+|+|+|.. | .+++.++.+++
T Consensus 208 g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 208 GFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred ccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHH
Confidence 135999999999999877666669999999975 3 34554444333
No 95
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.75 E-value=0.0002 Score=79.70 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 445 ~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
.+++..+...+++.|..+||.||.||+|.+.. .+ ...+.|... +..|+...|+----...=+.++.. --|
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~-~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g---~~~ 78 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GG-AAARPFITHHNALDMDLYLRIAPELYLKRLIVGG---FER 78 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CC-ccceeEEeccCCCCcceeeccCHHHHHHHHHhcC---CCc
Confidence 46788889999999999999999999996543 11 112234332 233455556543322222333321 359
Q ss_pred EEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
.|+||++||.|....-|.-||+|+++|.. + .|++.++.++++.
T Consensus 79 vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~ 124 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSG 124 (329)
T ss_pred EEEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 99999999999876667889999999975 3 4566666555543
No 96
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.74 E-value=0.00027 Score=81.21 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHCCCeee-cCCcccccc-----cccc--ccCCCcCceEEEEcC-------------------C----
Q 003117 448 REKAFSIITEVFKRHGAMAL-DTPVFEMRE-----TLMG--KYGEDSKLIYDLADQ-------------------G---- 496 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI-~tP~le~~e-----~~~~--~~g~~~~~~y~~~D~-------------------~---- 496 (846)
...+.+.++++|..-||.++ ..|.+|..- ++.+ +-..+....|-+.++ .
T Consensus 223 l~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~g 302 (492)
T PLN02853 223 LLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYG 302 (492)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCCC
Confidence 35667778999999999999 567776532 1111 111123456666421 0
Q ss_pred ------------CCeEeeCCCChHHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHH
Q 003117 497 ------------GELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEV 556 (846)
Q Consensus 497 ------------G~~l~LRpDlT~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEv 556 (846)
.+.++||.-.|+--+|++.... ..|.|.|++|+|||+|.....|.-||+|++.=++ -..+
T Consensus 303 S~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L 382 (492)
T PLN02853 303 SIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDL 382 (492)
T ss_pred ccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHH
Confidence 1468999999999999998532 3689999999999999888889999999987776 3567
Q ss_pred HHHHHHHHHHcCCCceEE
Q 003117 557 VKILTELLNELDIGDYEI 574 (846)
Q Consensus 557 I~l~~eil~~lgl~~~~i 574 (846)
+.++.++++.+|..++.+
T Consensus 383 ~g~l~~f~~~lg~~~~Rf 400 (492)
T PLN02853 383 IGVLEDFFSRLGMTKLRF 400 (492)
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 888889999887644444
No 97
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0003 Score=77.18 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=97.2
Q ss_pred cChhHHHHHHHHHHHHHHHHHHCCCeeecCCcccccc-----cccccc--CCCcCceEEEEcCCCCeEeeCCCChHHHHH
Q 003117 440 FAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRE-----TLMGKY--GEDSKLIYDLADQGGELCSLRYDLTVPFAR 512 (846)
Q Consensus 440 ~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e-----~~~~~~--g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR 512 (846)
+.|...-....+.+.++++|...||.++..|.+|..- ++.+.. ..+-...|-+.+. .+.+.||-..|+-=+|
T Consensus 105 ~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~-~~~~lLRTHTs~vq~R 183 (335)
T COG0016 105 IYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDD-REKLLLRTHTSPVQAR 183 (335)
T ss_pred CCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCC-CCceeecccCcHhhHH
Confidence 3444455567778889999999999999999877532 111110 1112456767543 2267899999999999
Q ss_pred HHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHcC
Q 003117 513 YVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNELD 568 (846)
Q Consensus 513 ~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lg 568 (846)
++..+...|+|.+.+|+|||+|.....+.-+|+|++.=++ =+.+..++.++++.|+
T Consensus 184 ~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 184 TLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred HHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 9999877799999999999999777788999999988555 2678888899999886
No 98
>PLN02903 aminoacyl-tRNA ligase
Probab=97.69 E-value=0.0002 Score=85.24 Aligned_cols=102 Identities=20% Similarity=0.302 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-CCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKR-HGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~-~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~ 519 (846)
-.-.++|..+...+++.|.. +||.||+||+|..... +...+.+... ...|..+.|+----...-+.++.
T Consensus 200 q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~------eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~--- 270 (652)
T PLN02903 200 NANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP------EGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVS--- 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC------CCCcccEEeeecCCCcccccCCCHHHHHHHHHhc---
Confidence 34568888999999999996 9999999999874331 1111121111 12356666663322211122221
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA 552 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~ 552 (846)
---|.|+||+|||+|..+..|.-||+|+|+|..
T Consensus 271 G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~s 303 (652)
T PLN02903 271 GFDRYYQIARCFRDEDLRADRQPEFTQLDMELA 303 (652)
T ss_pred cCCcEEEEehhhccCCCCCCcccceeeeeeeec
Confidence 135999999999999887778899999999975
No 99
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.67 E-value=0.00021 Score=79.76 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccc-cccccCCCc-CceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGEDS-KLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~-~~~~~g~~~-~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
.-.+++..+...+++.|.++||.||.||++..... ... .|.+. -..+.+ |--|+.+.|+...-.. -|.++..
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g--- 101 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRM--- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhh---
Confidence 34678888999999999999999999999976421 000 11110 112222 2236667777654433 4555532
Q ss_pred CceEEEeeceeecCCCCC---CCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 521 SFKRHQIAKVYRRDNPSK---GRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~---Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
--|+|+||++||.|..+. -|.-||+|+++|.. | .|++.++.++++.
T Consensus 102 ~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~ 153 (335)
T PRK06462 102 LGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKY 153 (335)
T ss_pred cCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHH
Confidence 359999999999998766 57889999999976 4 4566666666553
No 100
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.66 E-value=0.00023 Score=85.55 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCc-eEEEEcCCCCeEeeCCCChHHHHHHHHHcCCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~-~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
-.-.++|..+...+++.|..+||.||+||+|..... +.... ++...-..|..+.|+--.-...-+.++. -
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~------eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~---G 223 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP------EGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIA---G 223 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC------CCCcceEEeeecCCCcceecCCCHHHHHHHHHhc---c
Confidence 345688899999999999999999999999975321 11111 1111112455555653321111111111 1
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHH
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELL 564 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil 564 (846)
--|.|+|+++||+|..+.-|.-||+|+|+|.. | .+++.++.+++
T Consensus 224 ~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 224 FERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred CCcEEEEechhcCCCCCCCcCccccccceeeccCCHHHHHHHHHHHH
Confidence 35999999999999877777789999999975 3 34555444433
No 101
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00031 Score=81.20 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.-.+++..+...+++.|..+||.||+||+|..... +...+.|.+ +--|+.+.|+--.-...=+.++. --
T Consensus 133 ~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~------eg~~~~f~~-~~~~~~~~L~~Spql~~q~l~~~---g~ 202 (437)
T PRK05159 133 RAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT------EGGAELFPI-DYFEKEAYLAQSPQLYKQMMVGA---GF 202 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC------CCCcceEeE-EecCCceEecCCHHHHHHHHHhc---CC
Confidence 355688889999999999999999999999853221 112235555 23355666765544332233322 13
Q ss_pred ceEEEeeceeecCCCCCC-CccceEecccccc--c--HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA--D--FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~--D--aEvI~l~~eil~~ 566 (846)
-|.|+||++||+|..... +.-||+|+++|.. | .+++.++.+++..
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~ 252 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRY 252 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHH
Confidence 599999999999987654 5579999999985 5 3466666666553
No 102
>PLN02850 aspartate-tRNA ligase
Probab=97.62 E-value=0.00025 Score=83.42 Aligned_cols=113 Identities=17% Similarity=0.289 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
-.+++..+...+++.|..+||.||.||.|....+ +...+.|.+ +..|+.+.|+--.-...=+.++.. --|
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~------egga~~F~v-~yf~~~~~L~qSpql~kq~li~~g---~~r 293 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS------EGGSAVFRL-DYKGQPACLAQSPQLHKQMAICGD---FRR 293 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC------ccccceeee-ccCCcceecCCCHHHHHHHHHHhc---CCc
Confidence 4578888999999999999999999999854321 112235665 445677777755433333333321 249
Q ss_pred EEEeeceeecCCCCCC-CccceEeccccc-c--c-HHHHHHHHHHHHH
Q 003117 524 RHQIAKVYRRDNPSKG-RYREFYQCDFDI-A--D-FEVVKILTELLNE 566 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~G-r~REf~Q~g~ei-~--D-aEvI~l~~eil~~ 566 (846)
.|+||+|||.|..... +.-||+|.|+|. | + -|++.++.+++..
T Consensus 294 VfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~ 341 (530)
T PLN02850 294 VFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVA 341 (530)
T ss_pred eEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999975443 457999999995 3 3 5788887777654
No 103
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00026 Score=81.02 Aligned_cols=114 Identities=19% Similarity=0.359 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCc-CceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS-KLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~-~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-..+|-++...+++.+..+||.+|+||+|.... .+.. +-++.-.-+.|+-++||-- +++-..+-+-. --
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkST------PEGARDfLVPSRv~~G~FYALPQS--PQlfKQLLMvs-Gf 209 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKST------PEGARDFLVPSRVHPGKFYALPQS--PQLFKQLLMVA-GF 209 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCC------CccccccccccccCCCceeecCCC--HHHHHHHHHHh-cc
Confidence 3456778888899999999999999999986432 1211 1112112246888999854 34444333311 12
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc---cHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA---DFEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~---DaEvI~l~~eil~ 565 (846)
-|.|||.+|||+|..+.-|.=||+|.|+|.- .-||+.++-+.+.
T Consensus 210 dRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~edv~~~~E~l~~ 256 (585)
T COG0173 210 DRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLLR 256 (585)
T ss_pred cceeeeeeeecccccccccCCcceeEeEEeecCCHHHHHHHHHHHHH
Confidence 4899999999999888888899999999984 4445554444433
No 104
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=0.00034 Score=81.84 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEE-EcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~-~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.+++.++...+++.|..+||.||.||+|.+.. .|. ..+.|.. .+--+..+.|+--.-...=|.++.. -
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga-~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g---~ 240 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA-AARPFITHHNALDIDLYLRIAPELYLKRLIVGG---F 240 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc-cceeeeeccccCCCceEeccCHHHHHHHHHhcc---C
Confidence 4567888999999999999999999999996432 121 1223432 1222344446644333333443322 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|.|+||++||+|....-|.-||+|+++|.. | .+++.++.+++..
T Consensus 241 ~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~ 288 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRH 288 (491)
T ss_pred CcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 5999999999999877678889999999976 4 4566655555543
No 105
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.62 E-value=0.00037 Score=80.29 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.-.+++..+...+++.|..+||.||.||++.... .+...+.|.+. .-|+.+.|+--.-...=+.++. --
T Consensus 130 ~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~------~eg~~~~f~v~-~~~~~~yL~~Spql~~q~li~~---g~ 199 (428)
T TIGR00458 130 QAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASA------TEGGTELFPIT-YFEREAFLGQSPQLYKQQLMAA---GF 199 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCC------CCCCcceeeeE-ecCCcEEECcCHHHHHHHHHhc---cc
Confidence 34568888999999999999999999999986322 12223355542 2344455765443333333332 13
Q ss_pred ceEEEeeceeecCCCCCC-CccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|.|+||++||+|..... +.-||+|+++|.. | .+++.++.+++..
T Consensus 200 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~ 248 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR 248 (428)
T ss_pred CcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHH
Confidence 599999999999987654 5679999999976 3 4566666555543
No 106
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00039 Score=78.68 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=104.9
Q ss_pred CcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHHH
Q 003117 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFA 511 (846)
Q Consensus 435 ~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ia 511 (846)
.+++-+.+..+.+.+.+.+...+...+|||.++.+|.+-..++..+ +|.. .+.+|++.|. .+.|=|....|++
T Consensus 164 srf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g-tgqlpkf~e~~y~v~~~---~~~LipTaEvpl~ 239 (429)
T COG0172 164 SRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG-TGQLPKFEEDLYKVEDP---DLYLIPTAEVPLT 239 (429)
T ss_pred CceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc-cCCCCCCcccceEecCC---CEEEEecchhhhH
Confidence 4566667888999999999999999999999999999999997643 5654 3579998654 6889999999999
Q ss_pred HHHHHc----CCCCceEEEeeceeecCCCCC-----C--CccceEecccccc----c-----HHHHHHHHHHHHHcCCCc
Q 003117 512 RYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIA----D-----FEVVKILTELLNELDIGD 571 (846)
Q Consensus 512 R~~a~~----~~~plK~y~ig~VfR~e~p~~-----G--r~REf~Q~g~ei~----D-----aEvI~l~~eil~~lgl~~ 571 (846)
-+++.. ..+|+|++-+.+|||.|.... | |..||..+..-.| + -|++..+-++++.|++.
T Consensus 240 ~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP- 318 (429)
T COG0172 240 NLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP- 318 (429)
T ss_pred HhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC-
Confidence 888753 457999999999999996543 3 4445544333222 1 34778889999999984
Q ss_pred eEEEE
Q 003117 572 YEIKL 576 (846)
Q Consensus 572 ~~i~I 576 (846)
|.+..
T Consensus 319 yRvv~ 323 (429)
T COG0172 319 YRVVN 323 (429)
T ss_pred ceEee
Confidence 55544
No 107
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.59 E-value=0.00032 Score=81.34 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE--------cCCCCeEeeCCCChHHHHHH
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--------DQGGELCSLRYDLTVPFARY 513 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~--------D~~G~~l~LRpDlT~~iaR~ 513 (846)
-.-.+++..+...+++.|..+||.||.||++.... ++...+.|.+. +--|..+.|+--..... +.
T Consensus 130 ~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~------~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 130 GAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD------CEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC------CCCCCCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 34567888899999999999999999999997542 12223356552 12245556655543333 44
Q ss_pred HHHcCCCCceEEEeeceeecCCCCCC-CccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 514 VAMNGLTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 514 ~a~~~~~plK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
++. ---|.|+|+++||.|..... +.-||+|+++|.. | .|++.++.+++..
T Consensus 203 l~~---g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~ 256 (450)
T PRK03932 203 YAM---ALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKY 256 (450)
T ss_pred HHh---ccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHH
Confidence 432 23599999999999976443 5579999999976 3 4566666666553
No 108
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00033 Score=82.07 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEE-EcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~-~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.+++..+...+++.|...||.||.||+|.+.. .|.. ...|.. .+.-+..+.||--.-...=|.++.. -
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa~-a~pF~t~~~~~~~~~yL~~SpELylKrlivgG---~ 252 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGAS-ARPFITHHNALDLDMYLRIAPELYLKRLVVGG---F 252 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCCc-ccceecccccCCcceeeecCHHHHHHHHHhcc---C
Confidence 3567888999999999999999999999996532 1221 112211 1222334456554434444555422 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|.|+||++||+|....-|.-||+|+++|.. | -+++.++.+++..
T Consensus 253 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~ 300 (505)
T PRK12445 253 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT 300 (505)
T ss_pred CcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHH
Confidence 5999999999999875567889999999986 4 3456655555544
No 109
>PLN02502 lysyl-tRNA synthetase
Probab=97.54 E-value=0.00049 Score=81.17 Aligned_cols=114 Identities=20% Similarity=0.304 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.+++..|...++++|...||.||.||+|.+.. .|.. ...|... +.-+..+.||--.-...=|.++.. -
T Consensus 227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA~-a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g---~ 297 (553)
T PLN02502 227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGAA-ARPFVTHHNDLNMDLYLRIATELHLKRLVVGG---F 297 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCcc-ccceeeecccCCcceeeecCHHHHHHHHHHhc---c
Confidence 3457888899999999999999999999996532 1211 1223221 222444556544433434444422 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|+||++||+|....-|.-||+|+++|.. | .+++.++.+++.
T Consensus 298 ~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~ 344 (553)
T PLN02502 298 ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVS 344 (553)
T ss_pred CCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHH
Confidence 5999999999999876678889999999976 4 345555544444
No 110
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00048 Score=82.03 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc-CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D-~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.+++..+...+++.|...||.||+||+|.+.. ++...+.|.... .-+..+.||----...=|.++.. -
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~------~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG---~ 301 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHTVA------SGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG---M 301 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC------CCCCccceEeecccCCCCEEecCChHHHHHHHhhcc---c
Confidence 3457888899999999999999999999995421 222223453321 12334445544333333444321 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHHc
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNEL 567 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~l 567 (846)
-|.|+||++||+|....-|.-||+|+++|.. | .+++.++.+++..+
T Consensus 302 erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQL 350 (659)
T ss_pred CCEEEEeceecCCCCCCCccccccceeeeeecCCHHHHHHHHHHHHHHH
Confidence 5999999999999876668889999999976 4 45666666665543
No 111
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.52 E-value=0.00045 Score=81.85 Aligned_cols=112 Identities=19% Similarity=0.336 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC---CCCeEeeCCCChHHHHHHHHHcCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ---GGELCSLRYDLTVPFARYVAMNGL 519 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~---~G~~l~LRpDlT~~iaR~~a~~~~ 519 (846)
.-.++|.++...+++.|..+||.||+||+|.+.. .|.. ...|..+ -+..+.||----...=|.++..
T Consensus 251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA~---a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG-- 320 (585)
T PTZ00417 251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGAN---ARPFITHHNDLDLDLYLRIATELPLKMLIVGG-- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Cccc---ceeEEecccCCCcceEEeecHHHHHHHHHHhC--
Confidence 3467888999999999999999999999997642 1221 2233221 2334556643333444555432
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
--|.|+||++||+|....-|.-||+|++++.. | -+++.++.+++.
T Consensus 321 -~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~ 368 (585)
T PTZ00417 321 -IDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFS 368 (585)
T ss_pred -CCCEEEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHH
Confidence 25999999999999876667789999999986 4 345655544443
No 112
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.49 E-value=0.0005 Score=80.49 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.+++..+...+++.|..+||.||.||+|.+.. .|. .-+.|... +.-+..+.||----...=|.++.. -
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga-~a~pF~t~~~~~~~~~yLriSpELylKrlivgG---~ 240 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA-NARPFITHHNALDMDLYLRIAPELYLKRLIVGG---F 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc-cceeEEeecccCCCceEEecCHHHHHHHHHhCC---C
Confidence 3567888899999999999999999999996532 121 11234331 112344456654333444554422 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|+||++||+|....-|.-||+|+++|.. | .+++.++.+++.
T Consensus 241 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~ 287 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFK 287 (496)
T ss_pred CceEEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHH
Confidence 5999999999999876667889999999976 4 345555555544
No 113
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00061 Score=72.08 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCC---CCeEeeCCCChHHHHHHHHHcCCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQG---GELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~---G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
....|.++.+.|+.+|..+||.||+||.+.-.-.-..+ ...---.++.++ +..+-|.+.--.+.-|.+|..
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~h---L~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag--- 88 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIH---LHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAG--- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccc---eeeeeeEEeccCccccceeeeecCcHHHHHHHHHcc---
Confidence 46788899999999999999999999998643211100 000001233333 446666665555666777754
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA 552 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~ 552 (846)
.-+.|++|+|||++.-+.-+.=||+|...+-+
T Consensus 89 ~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv 120 (322)
T COG2269 89 SGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRV 120 (322)
T ss_pred CCcchhhhHHHhcccccccCCCceeEeeeecc
Confidence 23789999999997644445568888776655
No 114
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.35 E-value=0.0008 Score=78.05 Aligned_cols=113 Identities=15% Similarity=0.266 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--------CCCCeEeeCCCChHHHHHHHH
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--------QGGELCSLRYDLTVPFARYVA 515 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--------~~G~~l~LRpDlT~~iaR~~a 515 (846)
-.+++..+...+++.|..+||.||.||++.... ++...+.|.+.. --|+.+.|+--... .-+.++
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~------~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-~lq~l~ 207 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSND------CEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQL-YLETYA 207 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC------CCCCCCceEecccccccchhccCCccccccCHHH-HHHHHh
Confidence 458889999999999999999999999987533 122233455431 12344444433211 112222
Q ss_pred HcCCCCceEEEeeceeecCCCCC-CCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 516 MNGLTSFKRHQIAKVYRRDNPSK-GRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 516 ~~~~~plK~y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
. ---|.|+||++||.|.... -+.-||+|+++|.. | .+++.++.+++..
T Consensus 208 ~---g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~ 259 (453)
T TIGR00457 208 L---ALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKY 259 (453)
T ss_pred h---cccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHH
Confidence 1 2359999999999997764 35579999999976 4 4566665555543
No 115
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.34 E-value=0.00079 Score=79.43 Aligned_cols=113 Identities=13% Similarity=0.246 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
-.+++..+...+++.|..+||.||.||.|....+ +...+.|.+ +--|+.+.|+--.-.. -+.++..+ --|
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~------egga~~F~v-~yf~~~~~L~qSpql~-kq~li~~g--~~r 281 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS------EGGANVFKL-EYFNRFAYLAQSPQLY-KQMVLQGD--VPR 281 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC------Ccccccccc-ccCCCCeecCCCHHHH-HHHHHhcC--CCC
Confidence 4578888999999999999999999999865331 112234554 2234556665543322 23322211 359
Q ss_pred EEEeeceeecCCCCC-CCccceEecccccc---c-HHHHHHHHHHHHH
Q 003117 524 RHQIAKVYRRDNPSK-GRYREFYQCDFDIA---D-FEVVKILTELLNE 566 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~---D-aEvI~l~~eil~~ 566 (846)
.|+||+|||.|.... -|.-||+|+|+|.. + -|++.++.+++..
T Consensus 282 VfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~ 329 (550)
T PTZ00401 282 VFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNY 329 (550)
T ss_pred EEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHH
Confidence 999999999997754 35579999999863 3 5788777666653
No 116
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.28 E-value=0.00095 Score=78.79 Aligned_cols=116 Identities=14% Similarity=0.267 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC---CCCeEeeCC--------------
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ---GGELCSLRY-------------- 504 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~---~G~~l~LRp-------------- 504 (846)
-.-+++|..+...+++.|..+||.+|.||+|...+ .+...++|.+..+ .|...+|+.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~------~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~ 285 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD------CEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDI 285 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC------CCCCcceEEeeeccccccccccccccccccccccccccc
Confidence 34568889999999999999999999999986543 2333557777432 233333331
Q ss_pred -----------------------C------------------ChHH--H-HHHHHHcCCCCceEEEeeceeecCCCCCC-
Q 003117 505 -----------------------D------------------LTVP--F-ARYVAMNGLTSFKRHQIAKVYRRDNPSKG- 539 (846)
Q Consensus 505 -----------------------D------------------lT~~--i-aR~~a~~~~~plK~y~ig~VfR~e~p~~G- 539 (846)
. +|.+ + ...++ .---|.|+||++||.|.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~~---~g~~rVf~i~p~FRaE~s~t~R 362 (586)
T PTZ00425 286 LNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLC---SSMGDVYTFGPTFRAENSHTSR 362 (586)
T ss_pred cccccccccccccccccccccccccccccccccccccCcceEEEcCchHHHHHHH---hccCCEEEEeceEeCCCCCCCC
Confidence 0 0000 0 00000 013489999999999987644
Q ss_pred CccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 540 RYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 540 r~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
++-||+|.|+|+. | .+++.++.+++..
T Consensus 363 HL~EFt~lE~E~af~d~~d~m~~~E~li~~ 392 (586)
T PTZ00425 363 HLAEFWMIEPEIAFADLYDNMELAESYIKY 392 (586)
T ss_pred CCcccceEEEEEecCCHHHHHHHHHHHHHH
Confidence 4579999999975 3 3455554444443
No 117
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0013 Score=83.51 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCCc
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~pl 522 (846)
-.+++.++...+++.|..+||.||+||+|...+ |...-+.|... +.-+..+.||----...=|.++. ---
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~------gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivg---G~e 839 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH------GGANARPFVTHINAYDMDLYLRIAPELYLKRLCVG---GVE 839 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC------CCcccceeEeeecCCCccchhhcChHHHHHHHHhc---ccC
Confidence 356788899999999999999999999996432 21112234321 22222333333222222233321 135
Q ss_pred eEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
|.|+||++||+|....-|.-||+|+++|.. | .+++.++.++++.
T Consensus 840 rVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~ 886 (1094)
T PRK02983 840 RVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQN 886 (1094)
T ss_pred ceEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHH
Confidence 999999999999876668889999999986 4 3455555555543
No 118
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00092 Score=75.14 Aligned_cols=111 Identities=23% Similarity=0.448 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHH-HHCCCeeecCCccccccccccccCCCcCceEEEE--cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 445 MAVREKAFSIITEVF-KRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 445 ~~~~~~i~~~l~~vf-~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~--D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.++|..+...+++.| .+|||.+++||++..+.. +..+ -|-+- ...|.-++|+-. -.++-..+...+ -
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTP------gGA~-EFvVPtr~~~g~FYaLpQS-PQQfKQlLMvsG--i 247 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTP------GGAR-EFVVPTRTPRGKFYALPQS-PQQFKQLLMVSG--I 247 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhccCC------Cccc-eeecccCCCCCceeecCCC-HHHHHHHHHHhc--h
Confidence 466677777888888 589999999999865431 1111 12222 234778888643 122222222111 2
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|++++|||+|..+.-|.=||+|.|+|.. + -++++++-+.+.
T Consensus 248 drYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~liEdll~ 294 (628)
T KOG2411|consen 248 DRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLIEDLLR 294 (628)
T ss_pred hhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHHHHHHH
Confidence 3889999999999877788889999999985 3 345666555554
No 119
>PLN02532 asparagine-tRNA synthetase
Probab=97.13 E-value=0.0023 Score=76.09 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=33.8
Q ss_pred ceEEEeeceeecCCCCC-CCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSK-GRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|.|+||++||.|.... -|.-||+++++|+. | .+++.++.+++..
T Consensus 390 ~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~ 438 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKF 438 (633)
T ss_pred CceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHH
Confidence 59999999999998763 46899999999976 4 3455555544443
No 120
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.04 E-value=0.003 Score=74.68 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-------CCC-eEeeCC--CCh----HH
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-------GGE-LCSLRY--DLT----VP 509 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-------~G~-~l~LRp--DlT----~~ 509 (846)
-.++|..+...+++.|..+||.+|.||+|...+. +...++|.+... .|. ...|+- +.. ..
T Consensus 225 i~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~------EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 225 VARVRNALAYATHKFFQENGFVWVSSPIITASDC------EGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeecccCC------CccccCceeeeccccccccccccccccccCcccccccchh
Confidence 4588899999999999999999999999975431 222345655321 111 112220 000 01
Q ss_pred HH-H--HHHHcC--------CCCceEEEeeceeecCCCCCC-CccceEecccccc--c-HHHHHHHHHHHH
Q 003117 510 FA-R--YVAMNG--------LTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 510 ia-R--~~a~~~--------~~plK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
+- + ++.... .---|.|+||++||.|..... +.-||+|+++|+. | .+++.++.++++
T Consensus 299 yF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~ 369 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQ 369 (565)
T ss_pred hhCcceeeccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHH
Confidence 10 0 000000 012489999999999987654 5689999999985 4 335555444443
No 121
>PLN02221 asparaginyl-tRNA synthetase
Probab=96.99 E-value=0.0041 Score=73.61 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=34.3
Q ss_pred ceEEEeeceeecCCCC-CCCccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPS-KGRYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~-~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
-|.|+||++||.|... .-|.-||+++++|.. | .+++.++.+++..
T Consensus 327 ~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~ 375 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKY 375 (572)
T ss_pred CCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHH
Confidence 5999999999999764 347899999999975 3 4566665555544
No 122
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.009 Score=65.97 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=68.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCC---CCeEeeCCC-ChHHHHHHHH
Q 003117 440 FAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQG---GELCSLRYD-LTVPFARYVA 515 (846)
Q Consensus 440 ~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~---G~~l~LRpD-lT~~iaR~~a 515 (846)
+....+++|..+.....+.|..|+|..|.||++.-.|- +...+||++.... +. +-=||. +|++--=.+-
T Consensus 127 ~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC------EGaGE~F~vtt~~d~~~~-fFg~p~fLTVSgQLhlE 199 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC------EGAGEVFQVTTLTDYSKD-FFGRPAFLTVSGQLHLE 199 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC------CCCcceEEEEecCccccc-ccCCceEEEEeceehHH
Confidence 45667899999999999999999999999999875441 1224577765321 11 111111 1111000000
Q ss_pred HcCCCCceEEEeeceeecCCCCCC-CccceEecccccc
Q 003117 516 MNGLTSFKRHQIAKVYRRDNPSKG-RYREFYQCDFDIA 552 (846)
Q Consensus 516 ~~~~~plK~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~ 552 (846)
.+...--|.|.+|+.||.|+.+.- +.-|||+...|+.
T Consensus 200 ~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~A 237 (446)
T KOG0554|consen 200 AMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELA 237 (446)
T ss_pred HHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHH
Confidence 011113489999999999987654 5789999999987
No 123
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0072 Score=67.59 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=98.6
Q ss_pred cCCcccccC--hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCCh
Q 003117 433 LPKGTRDFA--KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 433 ~p~G~~D~l--p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT 507 (846)
-..|.+-|+ ...+.+-+.+.++-.+...++||.++.||.|...|+.. +.|.. ..+.|..+|.+ ....|--..-
T Consensus 171 ~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~-~cg~~~~~d~~~~y~ld~~-~~~~LiaTaE 248 (455)
T KOG2509|consen 171 KVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQ-KCGQLPRFDEEQYYVLDGG-DEKYLIATAE 248 (455)
T ss_pred hcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHH-HhccCcCCCcceEEeecCC-ccceeEeecc
Confidence 346777765 55667778888999999999999999999999999764 35542 35677777765 3444555556
Q ss_pred HHHHHHHHHc----CCCCceEEEeeceeecCCCCC-----C--CccceEecccccc---------cHHHHHHHHHHHHHc
Q 003117 508 VPFARYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIA---------DFEVVKILTELLNEL 567 (846)
Q Consensus 508 ~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~-----G--r~REf~Q~g~ei~---------DaEvI~l~~eil~~l 567 (846)
.|+|=+.... ..+|+|..-+.+|||.|.... | |..+|.-+..-.+ =-|+|....+++++|
T Consensus 249 ~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 249 QPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred chhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHh
Confidence 6888776642 467999999999999996432 3 3445543332222 246888889999999
Q ss_pred CCCceEE
Q 003117 568 DIGDYEI 574 (846)
Q Consensus 568 gl~~~~i 574 (846)
|+ +|.+
T Consensus 329 gi-p~rv 334 (455)
T KOG2509|consen 329 GL-PYRV 334 (455)
T ss_pred CC-ceeE
Confidence 98 4544
No 124
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.00078 Score=73.03 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCeeecCCcccccccc------c--cccCCCcCceEEEEcC-------------------CC----
Q 003117 449 EKAFSIITEVFKRHGAMALDTPVFEMRETL------M--GKYGEDSKLIYDLADQ-------------------GG---- 497 (846)
Q Consensus 449 ~~i~~~l~~vf~~~G~~eI~tP~le~~e~~------~--~~~g~~~~~~y~~~D~-------------------~G---- 497 (846)
-+|++.++++|-.-||.|+.|.-+...+-| + ++...+....|-+.|+ +|
T Consensus 215 mKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~ygs 294 (483)
T KOG2784|consen 215 MKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYGS 294 (483)
T ss_pred HHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcCC
Confidence 455566999999999999988765544322 1 1111222345555441 11
Q ss_pred ------------CeEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHH
Q 003117 498 ------------ELCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVV 557 (846)
Q Consensus 498 ------------~~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI 557 (846)
+...||-..|.--||.+-+ ....|.|+|.|.+|||+|.....+.-||+|+.--|. =..+|
T Consensus 295 ~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLi 374 (483)
T KOG2784|consen 295 IGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLI 374 (483)
T ss_pred cccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHH
Confidence 2346777777777886543 446799999999999999988889999999877666 36789
Q ss_pred HHHHHHHHHcCCCceE
Q 003117 558 KILTELLNELDIGDYE 573 (846)
Q Consensus 558 ~l~~eil~~lgl~~~~ 573 (846)
.++.+++.++|+++..
T Consensus 375 g~l~~ff~~lg~tnlr 390 (483)
T KOG2784|consen 375 GILMEFFTKLGATNLR 390 (483)
T ss_pred HHHHHHHhccCCcccc
Confidence 9999999999875433
No 125
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.45 E-value=0.0077 Score=68.44 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=64.1
Q ss_pred CCeEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCC-CCCCCccceEecccccc-----cHHHHHHHHHHHHHc
Q 003117 497 GELCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDN-PSKGRYREFYQCDFDIA-----DFEVVKILTELLNEL 567 (846)
Q Consensus 497 G~~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~-p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~l 567 (846)
-..+.||.-+|+...|.+.. +...|+|+|++|+|||+|. ....+.++|+|+++=++ =.|+..++..+++.|
T Consensus 180 s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred hhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34568999999988887764 6678999999999999985 45578999999998887 367888999999999
Q ss_pred CCCceEEE
Q 003117 568 DIGDYEIK 575 (846)
Q Consensus 568 gl~~~~i~ 575 (846)
|..++.++
T Consensus 260 G~~~vRFR 267 (533)
T TIGR00470 260 GFTKFRFR 267 (533)
T ss_pred CCceEEec
Confidence 86434444
No 126
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.16 E-value=0.028 Score=67.18 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccc-cccccCCCcC-ceEEEEcC-CCCeEeeCCCChHHHHHHHHHcC--CCC
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGEDSK-LIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTS 521 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~-~~~~~g~~~~-~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~~--~~p 521 (846)
..+++.+.+++.+...||.|+.|..|...+. +.. .+-... ..+++..+ +.+.-+||+.+++++.+.++.|. ..+
T Consensus 360 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred hHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCC
Confidence 3455667789999999999999999987754 322 222222 35777776 67778899999999999998763 458
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc----cH-HHHHHHHHHHHHcCC
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----DF-EVVKILTELLNELDI 569 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----Da-EvI~l~~eil~~lgl 569 (846)
+|+|++|+||+.+..+...++|+.+.++=+. |. ++-.++..++..+|+
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~lgi 491 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRELGI 491 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999865322224567777655444 33 344456666677776
No 127
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.018 Score=65.92 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEE-EcCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 445 MAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 445 ~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~-~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
...|-+|.+.|++.+...||.||+||++.+- +|-...+.|.- .+-=.-.+.||=-...-+-|.+.-. --|
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG---~er 250 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGG---FER 250 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc------CCCcccccceeeecccCCceEEeeccHHHHHHHHhcC---chh
Confidence 4677888899999999999999999998753 22222222211 1111234567766555666666522 249
Q ss_pred EEEeeceeecCCCCCCCccceEecccccc
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIA 552 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~ 552 (846)
.|.||++||+|.-..-+.=||+++.++.+
T Consensus 251 VfEIgr~FRNEGid~tHNPEFTmlE~Y~A 279 (502)
T COG1190 251 VFEIGRNFRNEGIDTTHNPEFTMLEFYQA 279 (502)
T ss_pred heeeccccccCCCccccCcchhhHHHHHH
Confidence 99999999999766667779999998876
No 128
>PLN02788 phenylalanine-tRNA synthetase
Probab=95.93 E-value=0.075 Score=60.37 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHC---CCeeec--CCcccccccccc------ccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHc
Q 003117 449 EKAFSIITEVFKRH---GAMALD--TPVFEMRETLMG------KYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN 517 (846)
Q Consensus 449 ~~i~~~l~~vf~~~---G~~eI~--tP~le~~e~~~~------~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~ 517 (846)
..+.+.|.++|... ||.+++ .|+..-...|.. +-+.+....|-+ + ...+||.-.|+.-+|++.++
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~-~---~~~lLRTHTSa~q~~~l~~~ 146 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV-D---AQTVLRCHTSAHQAELLRAG 146 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-c---CCccccCCCcHHHHHHHHhC
Confidence 45666678888876 999998 565443332211 111122446666 2 24789999999999999864
Q ss_pred CCCCceEEEeeceeecCCCCCCCccceEecccccc
Q 003117 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA 552 (846)
Q Consensus 518 ~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~ 552 (846)
. .|++..|+|||+|.....++-+|+|.+.=.+
T Consensus 147 ~---~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v 178 (402)
T PLN02788 147 H---THFLVTGDVYRRDSIDATHYPVFHQMEGVRV 178 (402)
T ss_pred C---CcEEEEeeEeecCCCCcccCccceeEEEEEE
Confidence 3 3899999999999888889999999986655
No 129
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.015 Score=65.38 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCC---CeEeeCCCChHHHHHHHHHcCCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGG---ELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G---~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
...+|-+|...|++++...||.||+||++... .|.....- |+..++ ..+.||----.-+-|.+.- -
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i------aGGA~AkP--FIT~hndldm~LylRiAPEL~lK~LvVG---G 292 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AGGATAKP--FITHHNDLDMDLYLRIAPELYLKMLVVG---G 292 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc------cCccccCc--eeecccccCcceeeeechHHHHHHHHhc---c
Confidence 45788889999999999999999999998632 22222222 233222 2233443222223333321 1
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc--cHH-HHHHHHHHHH
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--DFE-VVKILTELLN 565 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--DaE-vI~l~~eil~ 565 (846)
--|.|+||+.||+|--...+--||+-|.|+.. |-+ ++.+.-++++
T Consensus 293 ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s 340 (560)
T KOG1885|consen 293 LDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLS 340 (560)
T ss_pred HHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 34999999999999766677779999999876 443 3444444444
No 130
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.68 E-value=0.039 Score=56.94 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCceE
Q 003117 449 EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKR 524 (846)
Q Consensus 449 ~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~plK~ 524 (846)
+.+++.+++.+...||.|+.|..|...+.+.. .+...+..+++.++ +.+.=+||+.+.+++.+.++.| +..++|+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 34566789999999999999999977643322 22122246778777 6677789999999999999875 3468999
Q ss_pred EEeeceeecC
Q 003117 525 HQIAKVYRRD 534 (846)
Q Consensus 525 y~ig~VfR~e 534 (846)
|++|+||..+
T Consensus 82 FEiG~vf~~~ 91 (198)
T cd00769 82 FEIGRVFLKD 91 (198)
T ss_pred EEeEeEEecC
Confidence 9999999653
No 131
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.074 Score=59.01 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCC-eEeeCCCChHHHHHHHHHcCCCCceE
Q 003117 446 AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGE-LCSLRYDLTVPFARYVAMNGLTSFKR 524 (846)
Q Consensus 446 ~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~-~l~LRpDlT~~iaR~~a~~~~~plK~ 524 (846)
++..-|...+++.++..||.||.||-+.-.. .+.+.++|++.=-.+. -++-.|-+--+. +--. ---|.
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~as------SEGGanvF~v~Yfk~~A~LAQSPQLyKQM----aI~g-df~rV 297 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGAS------SEGGANVFRVSYFKQKAYLAQSPQLYKQM----AICG-DFERV 297 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceeccccccccc------CCCCceeEEEEeccCcchhhcChHHHHHH----HHhc-chhhe
Confidence 3444566678889999999999999876432 3444568877432222 222233222111 1101 13589
Q ss_pred EEeeceeecCCCCC-CCccceEecccccc----cHHHHHHHHHHH
Q 003117 525 HQIAKVYRRDNPSK-GRYREFYQCDFDIA----DFEVVKILTELL 564 (846)
Q Consensus 525 y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~----DaEvI~l~~eil 564 (846)
|.||+|||.|.+.. -+.-||.-.|+|.. --||+..+.+.|
T Consensus 298 yeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lf 342 (533)
T KOG0556|consen 298 YEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELF 342 (533)
T ss_pred eeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999987643 35789988888875 456776666554
No 132
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=92.16 E-value=0.75 Score=55.07 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc--CCCCce
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN--GLTSFK 523 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~--~~~plK 523 (846)
..++..+.+++.+..+||.|+.|-.|...+.+....+-.....+++.++ +.+.=+||+-+.+++.+.++.| +..++|
T Consensus 363 ~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~ 442 (551)
T TIGR00471 363 PLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQK 442 (551)
T ss_pred hHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCee
Confidence 3456667789999999999999999977643211122222235677776 6667789999999999999886 356899
Q ss_pred EEEeeceeecCCCCCCCccceEeccccc----ccHH-HHHHHHHHHHHcCCC
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDI----ADFE-VVKILTELLNELDIG 570 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei----~DaE-vI~l~~eil~~lgl~ 570 (846)
+|++|+||..+....-+-+++....+-+ +|.. +-.++..++..||++
T Consensus 443 lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 443 IFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGIE 494 (551)
T ss_pred EEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 9999999954211000122223333222 2433 334556666777764
No 133
>PRK07080 hypothetical protein; Validated
Probab=91.68 E-value=1.7 Score=47.68 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=91.9
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCC----CeeecCCccccccccccccCC--C-cCceEE---EE---------
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHG----AMALDTPVFEMRETLMGKYGE--D-SKLIYD---LA--------- 493 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G----~~eI~tP~le~~e~~~~~~g~--~-~~~~y~---~~--------- 493 (846)
+|.|..-.+.. ....+.|.+.+..++.++| +.++..|.+.+.+.|.+ ++- . .+.++. |.
T Consensus 32 ~~~g~~g~ygr-s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek-~~Y~ksFP~l~~~V~~~~g~~~e~~~l 109 (317)
T PRK07080 32 IPTGVDGLYGR-SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFER-SGYLKSFPQLAGTVHSFCGNEAEHRRL 109 (317)
T ss_pred eccCCCccccc-cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHh-cChhhhCcccceeecCCCCCCHHHHHH
Confidence 44444444432 2345566666666777666 99999999999987754 221 1 111221 11
Q ss_pred ------------cCCCCeEeeCCCChHHHHHHHHHcCCCC--ceEEE-eeceeecCCCC-CCCccceEecccccc-cHH-
Q 003117 494 ------------DQGGELCSLRYDLTVPFARYVAMNGLTS--FKRHQ-IAKVYRRDNPS-KGRYREFYQCDFDIA-DFE- 555 (846)
Q Consensus 494 ------------D~~G~~l~LRpDlT~~iaR~~a~~~~~p--lK~y~-ig~VfR~e~p~-~Gr~REf~Q~g~ei~-DaE- 555 (846)
+.....++|.|-.|.|+--.++....+| -++|. .|.+||+|... .-|..||.|-.+=.+ ..|
T Consensus 110 l~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~ 189 (317)
T PRK07080 110 LACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQ 189 (317)
T ss_pred HHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHH
Confidence 1133468899999999877777554443 36776 48999998642 237888888766555 222
Q ss_pred -------HHHHHHHHHHHcCCCceEEEEcchhhH
Q 003117 556 -------VVKILTELLNELDIGDYEIKLNHRLLL 582 (846)
Q Consensus 556 -------vI~l~~eil~~lgl~~~~i~Inh~~ll 582 (846)
-+....++.+.||+ ++.+++.+-.++
T Consensus 190 v~~~r~~w~e~~~~l~~~LgL-~~~ve~AnDPFF 222 (317)
T PRK07080 190 IVAFRQSWIERGTAMADALGL-PVEIDLANDPFF 222 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-ceeEeecCCccc
Confidence 24455677778888 578887776554
No 134
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=90.60 E-value=1 Score=51.90 Aligned_cols=97 Identities=24% Similarity=0.185 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHC--------CCeeecC--Ccccccccccc------ccCCCcCceEEEEcCCCCeEeeCCCChHHHHH
Q 003117 449 EKAFSIITEVFKRH--------GAMALDT--PVFEMRETLMG------KYGEDSKLIYDLADQGGELCSLRYDLTVPFAR 512 (846)
Q Consensus 449 ~~i~~~l~~vf~~~--------G~~eI~t--P~le~~e~~~~------~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR 512 (846)
..+.+.|.++|... ||...+. |+..-+..|.. +-+.+....|-+ + +..+||.-.++.-+|
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~---~~~lLRTHTSa~q~~ 120 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N---EQHLLRAHTSAHELE 120 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c---CCceeCCCCcHHHHH
Confidence 34555577888776 8888877 84333333321 111122345655 2 347899999988899
Q ss_pred HHHHcCC--CCce--EEEeeceeecCCCCCCCccceEeccc
Q 003117 513 YVAMNGL--TSFK--RHQIAKVYRRDNPSKGRYREFYQCDF 549 (846)
Q Consensus 513 ~~a~~~~--~plK--~y~ig~VfR~e~p~~Gr~REf~Q~g~ 549 (846)
.+..+.. .|.| +...|.|||++.....++-.|+|.+.
T Consensus 121 ~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG 161 (460)
T TIGR00469 121 CFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADG 161 (460)
T ss_pred HHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEE
Confidence 8876542 5777 77889999999877889999999983
No 135
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=89.88 E-value=0.2 Score=58.75 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred EEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCC----CCHHHHHHHHHHHH
Q 003117 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLL 80 (846)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~----l~~~~vRa~m~~rl 80 (846)
|+|||+ +||+++|+.|+.|.++|.++++.+++++++... ++..++|..+.|+|.. ++++..+..-.--+
T Consensus 1 v~l~g~--~Lt~~~v~~va~~~~~v~ls~~a~~~i~~s~~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi 78 (506)
T TIGR01225 1 VTLDGG--SLTLEDVVAVARHGARVSLSAAAREAVAKSRAAIEQIIAGDETVYGINTGFGKLASTRIDSEDLAELQRNLV 78 (506)
T ss_pred CEeCCC--CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCcccCHHHHHHHHHHHH
Confidence 578986 999999999999989999999999999998741 4456788888999884 66666655544444
Q ss_pred HHhcCC
Q 003117 81 NKLLLG 86 (846)
Q Consensus 81 n~l~~G 86 (846)
-+.+.|
T Consensus 79 ~sha~G 84 (506)
T TIGR01225 79 RSHAAG 84 (506)
T ss_pred HHHhcC
Confidence 444433
No 136
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=89.85 E-value=0.13 Score=60.06 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=53.8
Q ss_pred EEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCC----CCCHHHHHHHHHHHH
Q 003117 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVLL 80 (846)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~----~l~~~~vRa~m~~rl 80 (846)
|+|||+ +||+++|+.|+.+.++|.++|+.+++++++... +...++|..+.|+|. .+++++....-.--+
T Consensus 1 i~l~g~--~Lti~~v~~va~~~~~v~l~~~a~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll 78 (473)
T PF00221_consen 1 IVLDGE--SLTIDDVVAVARGGAKVELSPEARERIEASRAFLEDILASGKPIYGVNTGFGALKDVRIPPEELAELQRNLL 78 (473)
T ss_dssp EEESSS--S--HHHHHHHHHSTSEEEE-HHHHHHHHHHHHHHHHHHHTTCTCTTTSBSSGGGTTSBC-GHHHHHHHHHHH
T ss_pred CeeCCC--CCCHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHHHhcCCceeccccCCccccCCcCCHHHHHHHHHHHH
Confidence 789996 999999999999999999999999999998641 334578888888887 577777766665555
Q ss_pred HHhcCC
Q 003117 81 NKLLLG 86 (846)
Q Consensus 81 n~l~~G 86 (846)
-+.+.|
T Consensus 79 ~~h~~g 84 (473)
T PF00221_consen 79 RSHAAG 84 (473)
T ss_dssp HHH---
T ss_pred Hhhccc
Confidence 554444
No 137
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=88.38 E-value=1.6 Score=52.71 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccc-cccccCCC--cCceEEEEcC-CCCeEeeCCCChHHHHHHHHHcC--CC
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRET-LMGKYGED--SKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LT 520 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~-~~~~~g~~--~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~~--~~ 520 (846)
-.+++.+.+++.+...||.|+.|-+|...+. +. ..+.. .+...++.++ +.+.=+||+.+.+++...++.|. ..
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~-~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~ 476 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFA-MLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPK 476 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHH-hhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCC
Confidence 3466777889999999999999999877643 32 12211 1235677776 55666899999999999998763 45
Q ss_pred CceEEEeeceeecCCCC-CCCccceEeccccc----ccHHH-HHHHHHHHHHcCCC
Q 003117 521 SFKRHQIAKVYRRDNPS-KGRYREFYQCDFDI----ADFEV-VKILTELLNELDIG 570 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~-~Gr~REf~Q~g~ei----~DaEv-I~l~~eil~~lgl~ 570 (846)
|+|+|++|+||-.+... .| .||..-.++=+ .+.+- -.++..++..|++.
T Consensus 477 p~klFEiG~V~~~~~~~~~~-~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 477 PIKLFEVSDVVLLDESKDVG-ARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CeeEEEeEeEEecCCcccCC-cchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCc
Confidence 99999999999543211 11 02222222111 24443 34666777778774
No 138
>PRK09367 histidine ammonia-lyase; Provisional
Probab=88.24 E-value=0.39 Score=56.45 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCC----CCHHHHHHHHHHH
Q 003117 9 VITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVL 79 (846)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~----l~~~~vRa~m~~r 79 (846)
.|+|||+ +||+++|+.|+.+.++|.++++.+++++++... ++..++|..+.|+|.. ++++.....-.--
T Consensus 3 ~v~l~g~--~Lt~~~v~~va~~~~~v~ls~~~~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~lq~nL 80 (500)
T PRK09367 3 TITLTPG--TLTLEDLRAVAREGAKVELDPSARAAIAASRAVVERIVAEGRPVYGINTGFGKLASVRIAPEDLEQLQRNL 80 (500)
T ss_pred eEEECCC--CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCccccCcccCHHHHHHHHHHH
Confidence 5899996 999999999999889999999999999998741 4456788888998884 5556555543333
Q ss_pred HHHhcCC
Q 003117 80 LNKLLLG 86 (846)
Q Consensus 80 ln~l~~G 86 (846)
+-+.+.|
T Consensus 81 i~sha~G 87 (500)
T PRK09367 81 VLSHAAG 87 (500)
T ss_pred HHHHHcC
Confidence 3333333
No 139
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=84.82 E-value=0.44 Score=52.65 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=55.3
Q ss_pred CCeEeeCCCChHHHHH---HHHHcCCCCceEEEeeceeecCCC-CCCCccceEecccccccHHH-----HHHHHHHHHHc
Q 003117 497 GELCSLRYDLTVPFAR---YVAMNGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIADFEV-----VKILTELLNEL 567 (846)
Q Consensus 497 G~~l~LRpDlT~~iaR---~~a~~~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~DaEv-----I~l~~eil~~l 567 (846)
-..+.||..||....- .+......|+|+|.|.+|||+|+. ...|.-.++-+.+-++|-|| =.++--+|+.|
T Consensus 180 s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 180 SSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred CCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 4568899999887543 233455789999999999999864 33455566666665554443 23556678889
Q ss_pred CCCceEEEE
Q 003117 568 DIGDYEIKL 576 (846)
Q Consensus 568 gl~~~~i~I 576 (846)
|+++|.++=
T Consensus 260 GFe~F~Frp 268 (536)
T COG2024 260 GFEKFRFRP 268 (536)
T ss_pred Cccceeecc
Confidence 998888763
No 140
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=83.50 E-value=0.69 Score=54.44 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=53.5
Q ss_pred EcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCC----CCHHHHHHHHHHHHHH
Q 003117 12 VGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLLNK 82 (846)
Q Consensus 12 l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~----l~~~~vRa~m~~rln~ 82 (846)
||| .+||+++|+.|+.|.++|.++++++++++.+... +...++|..+.|+|.. ++++.....-.--+-+
T Consensus 1 l~g--~~Lt~~dv~~va~~~~~v~ls~~a~~ri~~sr~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi~s 78 (507)
T TIGR03832 1 IDG--ETLTVDAVRRVAEQRAPCRVPAESLAKAAKSRAIFEGIAEQNVPIYGVTTGYGEMIYMLVDKEHEVELQTNLVRS 78 (507)
T ss_pred CCC--CCCCHHHHHHHHhCCCCeeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCccCCHHHHHHHHHHHHHH
Confidence 456 4999999999999989999999999999998741 4445788888999884 5556655443333333
Q ss_pred hcCC
Q 003117 83 LLLG 86 (846)
Q Consensus 83 l~~G 86 (846)
.+.|
T Consensus 79 ha~G 82 (507)
T TIGR03832 79 HSAG 82 (507)
T ss_pred HhcC
Confidence 3333
No 141
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.01 E-value=4.7 Score=47.40 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=75.7
Q ss_pred cCcceEEEEEcCC--------cHHHHHHHHHHHHHCCCeEEEEc-C-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEE
Q 003117 751 ATETQVLVGLLGD--------KLPLAAELVSELWNAKVKAEYMV-H-KKVMKLIDRARESKIPWMVIVGERELNEGIVKL 820 (846)
Q Consensus 751 ~~~~dVlV~~~~~--------~~~~a~~la~~Lr~~GI~ael~~-~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~V 820 (846)
-++.+|.+++... ....+.++...|...+++++.+. + ...+.++..++-.++++++-+|.+..++.+++|
T Consensus 283 vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v 362 (500)
T COG0442 283 VADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATV 362 (500)
T ss_pred hccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEE
Confidence 3778888887642 23566777777888999999994 3 468889999999999999999999999999999
Q ss_pred EECCCCc--eeeechHHHHHH-HHHHh
Q 003117 821 KNIDTTQ--EEVISRSNFVEE-IQRRL 844 (846)
Q Consensus 821 k~l~~~~--e~~v~~~elv~~-L~~~l 844 (846)
.+..+++ -..+++...+.. +...+
T Consensus 363 ~~r~g~~~~~~mg~ygigvsr~v~a~i 389 (500)
T COG0442 363 LDRDGKEQPKTMGCYGIGVSRLVAALL 389 (500)
T ss_pred EecCCCccceEEEehhhhhhhHHHHHH
Confidence 9999888 567788888777 44444
No 142
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=75.99 E-value=1.1 Score=51.30 Aligned_cols=79 Identities=24% Similarity=0.257 Sum_probs=59.8
Q ss_pred eEEEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCCCCHHHHHHHHHHHHHH
Q 003117 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTLEESRAFLTVLLNK 82 (846)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~l~~~~vRa~m~~rln~ 82 (846)
..|+|||+ +||+++|+.|+.-.+.+.|++++++++.++... .+..++|.-+.|.|...+-...++-...-=-+
T Consensus 2 ~~i~l~~~--~lt~~dv~~Var~g~~v~l~~~a~~rI~~sra~v~~iv~~g~~vYGInTGfG~l~~v~I~~~d~~~Lqrn 79 (498)
T COG2986 2 MTIILDPG--SLTLEDLAAIAREGAPVRLDPAAWARIEKARARVAEIVAGGAPVYGINTGFGKLADVRIAAADLATLQRN 79 (498)
T ss_pred ceEEeCCC--CCCHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHHHHhCCCeeeeeccccccccccccCHHHHHHHHHh
Confidence 46899986 999999999999779999999999999988641 33445667788999866665555544444456
Q ss_pred hcCCCC
Q 003117 83 LLLGSS 88 (846)
Q Consensus 83 l~~G~S 88 (846)
|...|+
T Consensus 80 li~SHa 85 (498)
T COG2986 80 LILSHA 85 (498)
T ss_pred hHHHhh
Confidence 666666
No 143
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=74.18 E-value=4.4 Score=50.87 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=59.9
Q ss_pred HHHHHHHHHCCCeeecCCccccccccccccCCCcC-ceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCceEEEe
Q 003117 453 SIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSK-LIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKRHQI 527 (846)
Q Consensus 453 ~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~-~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~plK~y~i 527 (846)
+.+++.+..+||.|+.|-.|...+.+. ..+...+ ..+++.++ +.+.=.||+.+.+++.+.++.| +..++|+|++
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~-~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAE-KFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHH-hhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 457889999999999999998764332 1332221 25777776 5566679999999999999875 3568999999
Q ss_pred eceee
Q 003117 528 AKVYR 532 (846)
Q Consensus 528 g~VfR 532 (846)
|+||.
T Consensus 577 G~V~~ 581 (798)
T TIGR00472 577 GKVFA 581 (798)
T ss_pred ecccC
Confidence 99995
No 144
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=74.06 E-value=1.2 Score=53.98 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=48.6
Q ss_pred ceEEEEcCCCCCCCccceeEeecCCcccccChhHH-HHHHhcCCC-----CCCCCCcccccCCCCCCC
Q 003117 7 AAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSAL-DRLSSTLPN-----QNPPPVTKFQIPIPKTLT 68 (846)
Q Consensus 7 ~~~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~-~~lq~~~~~-----~~~~~~~~~h~g~g~~l~ 68 (846)
...|+|||. +||+++|++|+.+.++|.++++++ ++++++... ....++|..+.|.|..-+
T Consensus 30 ~~~v~l~G~--~Lti~~v~aVA~~~~~V~Ls~~a~~~rv~~S~~~l~~~i~~g~~IYGVnTGfG~~~d 95 (680)
T TIGR01226 30 GPLIKLDGA--TLTISQVAAAARRGVAVELDESARVERVKASSEWVMTQMSKGTDVYGVTTGFGGTSH 95 (680)
T ss_pred CCeEEECCC--CCCHHHHHHHHhCCCCeeECHHHHHHHHHHHHHHHHHHHhcCCeeeeecCCCCCccC
Confidence 345999996 999999999999889999999999 999988641 344567788888887433
No 145
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=73.10 E-value=4.6 Score=50.59 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCce
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFK 523 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~plK 523 (846)
.+...+.+++.+...||.|+.|-.|...+.... .+... ..+++.++ +.+.=+||+.+.+++.+.++.| +..++|
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~~~-~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~ 566 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGLNP-EPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVA 566 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCCCC-CeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEe
Confidence 345556789999999999999999987653321 32221 34667776 5666789999999999999875 356899
Q ss_pred EEEeeceeec
Q 003117 524 RHQIAKVYRR 533 (846)
Q Consensus 524 ~y~ig~VfR~ 533 (846)
+|++|+||..
T Consensus 567 lFEiG~Vf~~ 576 (791)
T PRK00629 567 LFEIGRVFLP 576 (791)
T ss_pred EEeeeeeeCC
Confidence 9999999954
No 146
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=72.99 E-value=2.3 Score=49.46 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=53.0
Q ss_pred CCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCC----CCHHHHHHHHHHHHHHhcCC
Q 003117 18 SLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLTVLLNKLLLG 86 (846)
Q Consensus 18 ~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~----l~~~~vRa~m~~rln~l~~G 86 (846)
+||+++|+.|+.|.++|.++++++++++.+... ++..++|..++|+|.. ++++..+..-.--+-+.+.|
T Consensus 2 ~Lt~~~v~~va~~~~~v~ls~~a~~ri~~s~~~l~~~~~~~~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi~sha~G 79 (444)
T cd00332 2 SLTLEDVVAVARGGEKVELSPEARERVDASRAALEEAAAEGKPVYGVNTGFGALADVRIDDADLRALQRNLLRSHAAG 79 (444)
T ss_pred CCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeCCCCCCcCCcccCHHHHHHHHHHHHHHHhcC
Confidence 699999999999989999999999999998742 4456788889999884 56666555554444444444
No 147
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.15 E-value=8.8 Score=43.08 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
-+++|..+...+++.|...||.||.+|++--..+ +.+..+|+| |-=|+.-. +|.+---|+-+-....-.
T Consensus 242 vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV------EGGsTLFkl-dYyGEeAy----LTQSSQLYLEtclpAlgd 310 (545)
T KOG0555|consen 242 VLKARAALLRAMRDHYFERGYTEVTPPTMVQTQV------EGGSTLFKL-DYYGEEAY----LTQSSQLYLETCLPALGD 310 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCceecCCCceEEEEe------cCcceEEee-cccCchhh----ccchhHHHHHHhhhhcCc
Confidence 3567777888899999999999999999864332 112346776 44444332 233333333332223348
Q ss_pred EEEeeceeecCCCCC-CCccceEecccccc
Q 003117 524 RHQIAKVYRRDNPSK-GRYREFYQCDFDIA 552 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~-Gr~REf~Q~g~ei~ 552 (846)
.|+|.+.||.|+++. -+.-||+-+.+|+.
T Consensus 311 vy~I~~SyRAEkSrTRRHLsEytHVEaE~a 340 (545)
T KOG0555|consen 311 VYCIQQSYRAEKSRTRRHLSEYTHVEAECA 340 (545)
T ss_pred eeEecHhhhhhhhhhhhhhhhheeeeeecc
Confidence 999999999997653 35678888888874
No 148
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=71.00 E-value=6 Score=48.89 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHcC---CCCce
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG---LTSFK 523 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~~---~~plK 523 (846)
.++..+.+++.+...||.|+.|-.|...+.+ .+..+++.++ +.+.=+||+-+.+++.+.++.|. ..++|
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~-------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~r 472 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF-------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLE 472 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc-------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence 4566677899999999999999988766432 1135677776 66677899999999999998763 46899
Q ss_pred EEEeeceee
Q 003117 524 RHQIAKVYR 532 (846)
Q Consensus 524 ~y~ig~VfR 532 (846)
+|++|+||-
T Consensus 473 lFEiG~Vf~ 481 (704)
T CHL00192 473 GFEIGHVFN 481 (704)
T ss_pred EEEeeeeEc
Confidence 999999994
No 149
>PLN02457 phenylalanine ammonia-lyase
Probab=67.70 E-value=3.9 Score=49.75 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=47.6
Q ss_pred eEEEEcCCCCCCCccceeEeecC---CcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCCCCH
Q 003117 8 AVITVGGKGSSLNSSSVYAISNG---LAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTL 69 (846)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tg---~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~l~~ 69 (846)
..|+|||+ +||+++|+.|+.+ .+.|.++++++++++++... ....++|.-+.|.|..-+.
T Consensus 44 ~~v~l~G~--~Lti~~V~aVA~~~~~~~~V~ls~~a~~ri~~S~~~l~~~~~~g~~iYGVtTGfG~~~d~ 111 (706)
T PLN02457 44 PVVKLEGE--TLTIAQVAAVARRGAGGVRVELSESARARVKASSDWVMESMMKGTDSYGVTTGFGATSHR 111 (706)
T ss_pred ceEEECCC--CCCHHHHHHHHhcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhcCCeeeeecCCCCCccCC
Confidence 45999996 9999999999987 47899999999999998641 3345677778888875433
No 150
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=66.65 E-value=17 Score=42.86 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCCCeEeeCCCChHHHHHHHHHc---CCCCceEEEeeceeecCCC-CCCCccceEeccccc----ccH-HHHHHHHHHHH
Q 003117 495 QGGELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDI----ADF-EVVKILTELLN 565 (846)
Q Consensus 495 ~~G~~l~LRpDlT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei----~Da-EvI~l~~eil~ 565 (846)
+....-+||+.+++++...++.| +..|+|+|++|+|||.+.. ...+...+.+...-. +|. ++-.++..+++
T Consensus 179 p~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~ 258 (529)
T PRK06253 179 PESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLS 258 (529)
T ss_pred CccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHH
Confidence 44566779999999998888764 5679999999999987531 111222333321111 132 34556677788
Q ss_pred HcCCCceEEE
Q 003117 566 ELDIGDYEIK 575 (846)
Q Consensus 566 ~lgl~~~~i~ 575 (846)
.||+.++.+.
T Consensus 259 ~LGI~~i~f~ 268 (529)
T PRK06253 259 QFGFTKFKFR 268 (529)
T ss_pred HcCCCeEEEe
Confidence 8887544443
No 151
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=59.34 E-value=13 Score=45.48 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc--CCCC-c
Q 003117 447 VREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN--GLTS-F 522 (846)
Q Consensus 447 ~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~--~~~p-l 522 (846)
..+...+.+++.+...||+|+.|-.|...+.... .+....+..++..+ +-+.-+||+-+-+++.+.++.| ...| .
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~-~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~ 430 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKL-FGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDV 430 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHH-hccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCe
Confidence 4455566689999999999999999988775432 22211224566665 5556679999999999999876 3456 8
Q ss_pred eEEEeeceeecCCC
Q 003117 523 KRHQIAKVYRRDNP 536 (846)
Q Consensus 523 K~y~ig~VfR~e~p 536 (846)
|+|++|.||-.+..
T Consensus 431 ~iFEiG~v~~~~~~ 444 (650)
T COG0072 431 RIFEIGDVFVKDEE 444 (650)
T ss_pred eEEEeeeeEecCCc
Confidence 99999999997643
No 152
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.67 E-value=9.1 Score=43.97 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=35.6
Q ss_pred EEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCC
Q 003117 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLP 49 (846)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~ 49 (846)
|.|||+ .||++++..+++|.+.|.+++++.++++.+..
T Consensus 66 v~L~Ge--tLt~~qva~~~kg~~~veLs~ea~~~V~as~~ 103 (715)
T KOG0222|consen 66 VNLGGE--TLTIGQVAAVAKGGVKVELSEEARAGVKASSD 103 (715)
T ss_pred eeeCCc--cccHHHHHHhccCceeEEeCHHHHhhhhhhHH
Confidence 789997 99999999999999999999999999998864
No 153
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=40.47 E-value=6.8e+02 Score=30.40 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEecC--C---CCCC-----ccccC--CCcccCCCccchh
Q 003117 667 DDLEILFQALEKSKCIDKVVFDLS--L---ARGL-----DYYTG--VGSIAAGGRYDNL 713 (846)
Q Consensus 667 ~~L~~l~~~l~~~g~~~~i~~Dls--l---~rgl-----~YYtG--~g~ia~GGRYD~L 713 (846)
.--..+.++++..|+. .+.+|.- + ..|. ...+| .+++-.|||||+.
T Consensus 215 ~~~~~~~~~~~~~Gl~-~v~~D~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~ 272 (591)
T PRK13799 215 ACANQISDWMRDAGFD-EVEIDAVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGR 272 (591)
T ss_pred HHHHHHHHHHHHcCCC-eEeECCCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccH
Confidence 3344556778888873 2566642 1 1111 12333 4578889999974
No 154
>COG4038 Predicted membrane protein [Function unknown]
Probab=37.95 E-value=17 Score=31.13 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=26.7
Q ss_pred ccccC--------CCcccCCCccchhhhhhCCCCccceeecc
Q 003117 696 DYYTG--------VGSIAAGGRYDNLIGMFGTKQVPAVGVSL 729 (846)
Q Consensus 696 ~YYtG--------~g~ia~GGRYD~Li~~fg~~~~pAVGfsi 729 (846)
-||+| .+..++-||-|-.++..+- ++|+||.|+
T Consensus 7 ~~y~ga~~ii~gs~~~~~gp~~~dpiv~~LN~-EiPtvGVSL 47 (87)
T COG4038 7 ILYTGAFMIILGTLGAAIGPARSDPVVKSLNL-ELPTVGVSL 47 (87)
T ss_pred hhhhccHHHHHhHHHhhcCCcccCcHHHHhcc-ccccceeee
Confidence 37888 3467889999999988875 799999875
No 155
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.12 E-value=77 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=30.2
Q ss_pred cceEEEEEcCCcHHHHHHHHHHHHHCCCeEEEEc
Q 003117 753 ETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMV 786 (846)
Q Consensus 753 ~~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~ 786 (846)
..|+.|++.+.....+++.++.|.+.||++.+..
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEe
Confidence 3589999999888899999999999999999865
No 156
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=30.40 E-value=12 Score=42.54 Aligned_cols=53 Identities=40% Similarity=0.728 Sum_probs=40.9
Q ss_pred eEEEecCCCCCCccccC-------CCcccCCCccchhhhhhCC-CCccceeecchHHHHHH
Q 003117 684 KVVFDLSLARGLDYYTG-------VGSIAAGGRYDNLIGMFGT-KQVPAVGVSLGIERVFT 736 (846)
Q Consensus 684 ~i~~Dlsl~rgl~YYtG-------~g~ia~GGRYD~Li~~fg~-~~~pAVGfsigleRL~~ 736 (846)
+...|..+.+..+||+| .....+|||||.+...++. ..++++||++.++|...
T Consensus 323 ~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~ 383 (390)
T COG3705 323 ERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLTGLGASEEIPGVGFSLWLDRGVA 383 (390)
T ss_pred cchhhhccCccchhhHHHHHHHHHHhcccCCeEEEecccccchHhhhcccceeEeecccce
Confidence 44556667788999999 2358899999999876654 35789999999988743
No 157
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=28.25 E-value=2.8e+02 Score=32.68 Aligned_cols=127 Identities=21% Similarity=0.204 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCC-CCeEeeCCCChHHHHHHHHHcC--CCCceE
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQG-GELCSLRYDLTVPFARYVAMNG--LTSFKR 524 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~-G~~l~LRpDlT~~iaR~~a~~~--~~plK~ 524 (846)
.+++-+.+|......||.|+-|=+|-..|- + ..+....+.+.++. -+--+.|-.+-+++.+-++.|+ .+|+|+
T Consensus 394 lNkl~d~lR~e~a~ag~~E~l~~~LcS~de--~--~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP~kl 469 (578)
T KOG2472|consen 394 LNKLTDILRIEVAAAGFTEALTFTLCSRDE--N--VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLPIKL 469 (578)
T ss_pred hHHHHHHHHHHHHHhhhhhheeeeeecccc--C--CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCceeE
Confidence 467777888888889999988776655542 1 11223345555442 2334578888999999999875 568999
Q ss_pred EEeec-eeecCCCCCCCccceEecccccc---cHHHHH-HHHHHHHHcCCC-ceEEEEcc
Q 003117 525 HQIAK-VYRRDNPSKGRYREFYQCDFDIA---DFEVVK-ILTELLNELDIG-DYEIKLNH 578 (846)
Q Consensus 525 y~ig~-VfR~e~p~~Gr~REf~Q~g~ei~---DaEvI~-l~~eil~~lgl~-~~~i~Inh 578 (846)
|+++. ||.++....|-..|-+-|.+..- ..|+|. +++..|+.-++. .|.++-..
T Consensus 470 FEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~~~~~~Y~i~~~~ 529 (578)
T KOG2472|consen 470 FEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVPPIRDSYYIEADE 529 (578)
T ss_pred EEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCCccccceEEecCc
Confidence 99986 66766655565545555555543 555554 344444443332 35555443
No 158
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=26.23 E-value=1.7e+02 Score=33.20 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=40.7
Q ss_pred ceEEEEEcCCcHHHHHHHHHHHHHCCCeEEEEcCCC---H--HHHHHHHHhcCCCEEEEEcCcc
Q 003117 754 TQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKK---V--MKLIDRARESKIPWMVIVGERE 812 (846)
Q Consensus 754 ~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~~~~---l--~~~~~~A~~~gi~~iviIg~~e 812 (846)
.|+.|++.+.....+++.++.|.++||++++.+-.+ + +...+.++ +...+|++-+..
T Consensus 229 ~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~--~t~~vvtvEE~~ 290 (356)
T PLN02683 229 KDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVR--KTNRLVTVEEGW 290 (356)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHh--hcCeEEEEeCCC
Confidence 589999998878889999999999999999876322 2 22333443 345677776543
No 159
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.50 E-value=3.1e+02 Score=29.57 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=44.7
Q ss_pred HHHHHCCCeEEEEcCC----CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 773 SELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 773 ~~Lr~~GI~ael~~~~----~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
..+++.||.+-+..+. -..++++-|.+.||+.++|-.+.. .......-+.+|+++|+++.++
T Consensus 191 al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~el~~~l~~~~~ 256 (256)
T TIGR00715 191 ALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-----------IPGVAIFDDISQLNQFVARLLP 256 (256)
T ss_pred HHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-----------CCCCccCCCHHHHHHHHHHhcC
Confidence 5567789999888742 378899999999999988866542 1111223478999999988653
No 160
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=25.40 E-value=44 Score=36.29 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=22.3
Q ss_pred ccchhhhhhCCCCccceeecchHHHHHHHHHH
Q 003117 709 RYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 740 (846)
Q Consensus 709 RYD~Li~~fg~~~~pAVGfsigleRL~~~L~~ 740 (846)
-|+..++.+.....|+-||++|+|||+..+..
T Consensus 223 ~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g 254 (269)
T cd00669 223 YFEFYLKALEYGLPPHGGLGIGIDRLIMLMTN 254 (269)
T ss_pred cHHHHHHHHHcCCCCCceEeeHHHHHHHHHhC
Confidence 45555655422235789999999999888764
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.88 E-value=6.2e+02 Score=24.42 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=8.9
Q ss_pred cHHHHHHHHHHHHHCCC
Q 003117 764 KLPLAAELVSELWNAKV 780 (846)
Q Consensus 764 ~~~~a~~la~~Lr~~GI 780 (846)
......++.++|++.|.
T Consensus 67 ~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 67 GEIDCRGLREKCIEAGL 83 (137)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 34445555555555543
No 162
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=23.22 E-value=1.3e+02 Score=29.13 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCCcchHHHHHHHHHHhhcc-ccccCcccCCc-ccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCcccccc
Q 003117 406 PRDPEFDGLLTKIREIVESN-ESRRLPKLPKG-TRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRE 476 (846)
Q Consensus 406 p~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~G-~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e 476 (846)
-.||||+.+..-|.-....+ +.-++.+|..| -+|+..-....++..-++|+...+++||..++..--++..
T Consensus 30 ~~SpEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~ 102 (130)
T PF04914_consen 30 TKSPEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYEP 102 (130)
T ss_dssp SS-THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGTTST
T ss_pred cCCccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCC
Confidence 35888888755444223322 23355566666 5778887888999999999999999999777766555443
No 163
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.26 E-value=4.3e+02 Score=26.19 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=38.0
Q ss_pred eEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHh---cCCCEEEEE
Q 003117 755 QVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARE---SKIPWMVIV 808 (846)
Q Consensus 755 dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~A~~---~gi~~iviI 808 (846)
+|.|+.-+. +...+.+....|.+.||.+++... .++++..++.++ .++..+|.+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEE
Confidence 577777776 788999999999999999988762 346655555544 567655544
No 164
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=22.23 E-value=1.6e+02 Score=30.54 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=23.4
Q ss_pred cccCCCccchhhhhh--------CCCC-ccceeecchHHHHHHHH
Q 003117 703 SIAAGGRYDNLIGMF--------GTKQ-VPAVGVSLGIERVFTIM 738 (846)
Q Consensus 703 ~ia~GGRYD~Li~~f--------g~~~-~pAVGfsigleRL~~~L 738 (846)
.++++++|+.+-..+ ++.. .+.+++++++||++.++
T Consensus 190 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eR~l~al 234 (235)
T cd00670 190 ETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEERLVLAL 234 (235)
T ss_pred eeeEEEeecchhhhhccEEEccCCCceeeEEEeCccHHHHHHHHH
Confidence 366666666655442 2222 44778889999998775
No 165
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=22.20 E-value=55 Score=35.77 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=16.6
Q ss_pred CccceeecchHHHHHHHHHH
Q 003117 721 QVPAVGVSLGIERVFTIMEQ 740 (846)
Q Consensus 721 ~~pAVGfsigleRL~~~L~~ 740 (846)
-.|+-||++|+|||+..+..
T Consensus 246 ~pP~~G~giGidRL~m~~~g 265 (280)
T cd00777 246 APPHGGIALGLDRLVMLLTG 265 (280)
T ss_pred CCCCCeEeEhHHHHHHHHcC
Confidence 35788999999999888764
No 166
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=20.71 E-value=55 Score=36.57 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=16.0
Q ss_pred CccceeecchHHHHHHHHHHh
Q 003117 721 QVPAVGVSLGIERVFTIMEQI 741 (846)
Q Consensus 721 ~~pAVGfsigleRL~~~L~~~ 741 (846)
-.|.-||++|+|||+..+...
T Consensus 301 ~pp~~G~glG~eRLvm~l~g~ 321 (335)
T PF00152_consen 301 MPPHGGFGLGLERLVMLLLGL 321 (335)
T ss_dssp --SEEEEEEEHHHHHHHHHT-
T ss_pred CcccCcceehHHHHHHHHcCC
Confidence 357889999999999888653
No 167
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=20.30 E-value=1.6e+03 Score=27.26 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCceEEEecC--C---CCC-----CccccC--CCcccCCCccchh
Q 003117 669 LEILFQALEKSKCIDKVVFDLS--L---ARG-----LDYYTG--VGSIAAGGRYDNL 713 (846)
Q Consensus 669 L~~l~~~l~~~g~~~~i~~Dls--l---~rg-----l~YYtG--~g~ia~GGRYD~L 713 (846)
-..+.++++.+|+. .+.+|.- + ..| -....| .+++-.|||||+.
T Consensus 217 ~~~l~~~~~~~Gl~-~v~~D~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~ 272 (591)
T PRK13590 217 AQQISHWMRDCGFD-EVHIDAVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGR 272 (591)
T ss_pred HHHHHHHHHHcCCC-eeeECCCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccH
Confidence 33455677888873 4666642 0 011 012222 4577889999874
No 168
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=20.24 E-value=2.4e+02 Score=31.56 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=39.1
Q ss_pred ceEEEEEcCCcHHHHHHHHHHHHHCCCeEEEEcCCC---H--HHHHHHHHhcCCCEEEEEcCc
Q 003117 754 TQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKK---V--MKLIDRARESKIPWMVIVGER 811 (846)
Q Consensus 754 ~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~~~~---l--~~~~~~A~~~gi~~iviIg~~ 811 (846)
.|+.|+..+.....+++.++.|.+.||++++.+-.+ + +...+.++ +...+|++-+.
T Consensus 202 ~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~--~t~~vv~vEE~ 262 (327)
T CHL00144 202 NDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVK--KTHKVLIVEEC 262 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHH--hhCcEEEEECC
Confidence 588898888877889999999999999999876322 2 22333333 34556777554
No 169
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.06 E-value=2.5e+02 Score=28.02 Aligned_cols=91 Identities=9% Similarity=0.037 Sum_probs=56.0
Q ss_pred CcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc--C-C----CHHHHHHHHHhcCCCEEEEEcCcccc----cCeEE
Q 003117 752 TETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV--H-K----KVMKLIDRARESKIPWMVIVGERELN----EGIVK 819 (846)
Q Consensus 752 ~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~--~-~----~l~~~~~~A~~~gi~~iviIg~~e~~----~g~V~ 819 (846)
....|+|++-.. .--.++-+++.|.++|++|.+.. + + ....+++.++..|++++-.....+.. .-.+-
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 345677766554 55789999999999999999843 2 1 26778888899998876544433321 24455
Q ss_pred EEECC-CCceeee--chHHHHHHHHH
Q 003117 820 LKNID-TTQEEVI--SRSNFVEEIQR 842 (846)
Q Consensus 820 Vk~l~-~~~e~~v--~~~elv~~L~~ 842 (846)
|--+- ++-...+ +..++++|+.+
T Consensus 104 IDal~G~G~~~~l~~~~~~~i~~iN~ 129 (169)
T PF03853_consen 104 IDALFGTGFSGPLRGPIAELIDWINA 129 (169)
T ss_dssp EEES-STTGGSCGSTCHHHHHHHHHH
T ss_pred EEecccCCCCCCcCHHHHHHHHHHhc
Confidence 55543 3322222 57777777754
Done!