Query 003117
Match_columns 846
No_of_seqs 535 out of 2202
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3unv_A ADMH; MIO, lyase; HET: 100.0 6.9E-82 2.4E-86 717.0 26.8 328 23-384 76-511 (547)
2 2qve_A Tyrosine aminomutase; M 100.0 6.8E-80 2.3E-84 701.4 31.7 330 22-385 49-488 (526)
3 1gkm_A Histidase, HAL, histidi 100.0 6.1E-81 2.1E-85 707.3 21.9 327 22-384 50-469 (507)
4 2nyn_A Phenylalanine/histidine 100.0 1.3E-79 4.4E-84 700.6 28.9 339 23-386 76-518 (565)
5 2o6y_A Putative histidine ammo 100.0 4.8E-79 1.6E-83 693.8 26.6 331 22-384 57-494 (521)
6 1w27_A Phenylalanine ammonia-l 100.0 2.3E-77 7.7E-82 693.5 31.2 308 23-344 108-525 (714)
7 1y2m_A Phenylalanine ammonia-l 100.0 1.5E-76 5.2E-81 688.1 27.7 308 23-344 108-539 (716)
8 2yii_A Phenylalanine ammonia-l 100.0 6E-77 2.1E-81 689.1 23.3 309 22-344 97-516 (705)
9 4g85_A Histidine-tRNA ligase, 100.0 9.6E-74 3.3E-78 667.8 41.7 419 426-846 62-515 (517)
10 4g84_A Histidine--tRNA ligase, 100.0 2.6E-73 8.9E-78 656.4 39.4 418 427-846 10-462 (464)
11 3net_A Histidyl-tRNA synthetas 100.0 1.6E-70 5.5E-75 631.6 35.8 408 428-844 9-464 (465)
12 3lc0_A Histidyl-tRNA synthetas 100.0 3.3E-70 1.1E-74 625.6 37.2 393 429-836 27-446 (456)
13 1wu7_A Histidyl-tRNA synthetas 100.0 3.1E-66 1.1E-70 592.5 39.7 399 428-845 3-426 (434)
14 3od1_A ATP phosphoribosyltrans 100.0 9.1E-63 3.1E-67 555.3 35.2 367 429-813 8-394 (400)
15 4e51_A Histidine--tRNA ligase; 100.0 3.2E-61 1.1E-65 554.0 34.2 381 430-844 31-458 (467)
16 1h4v_B Histidyl-tRNA synthetas 100.0 1.4E-59 4.6E-64 535.6 40.6 384 430-844 2-420 (421)
17 1htt_A Histidyl-tRNA synthetas 100.0 5.1E-60 1.7E-64 539.4 31.7 384 430-844 3-422 (423)
18 3rac_A Histidine-tRNA ligase; 100.0 1.5E-56 5.2E-61 500.3 24.0 318 406-743 7-368 (373)
19 1qe0_A Histidyl-tRNA synthetas 100.0 2.8E-55 9.4E-60 499.9 26.5 378 431-841 2-419 (420)
20 1z7m_A ATP phosphoribosyltrans 100.0 2.6E-54 8.8E-59 477.9 25.6 297 429-742 20-338 (344)
21 2j3l_A Prolyl-tRNA synthetase; 100.0 1E-42 3.5E-47 411.1 25.5 402 428-845 30-565 (572)
22 1evl_A Threonyl-tRNA synthetas 100.0 3.2E-42 1.1E-46 389.9 28.1 343 430-845 15-392 (401)
23 1usy_A ATP phosphoribosyltrans 100.0 6.5E-43 2.2E-47 375.5 14.0 246 450-734 5-273 (275)
24 2i4l_A Proline-tRNA ligase; al 100.0 2.5E-43 8.6E-48 404.9 9.8 366 428-840 50-457 (458)
25 1nyr_A Threonyl-tRNA synthetas 100.0 6.8E-40 2.3E-44 391.3 24.1 352 432-845 258-640 (645)
26 1qf6_A THRRS, threonyl-tRNA sy 100.0 7.7E-38 2.6E-42 372.2 30.3 346 429-845 255-633 (642)
27 3a32_A Probable threonyl-tRNA 100.0 2E-39 7E-44 373.7 14.0 347 433-844 37-446 (471)
28 1hc7_A Prolyl-tRNA synthetase; 100.0 1.5E-37 5.1E-42 357.5 26.0 319 431-844 30-385 (477)
29 1nj8_A Proline-tRNA synthetase 100.0 4.5E-37 1.5E-41 352.4 26.6 312 432-844 25-379 (459)
30 3uh0_A Threonyl-tRNA synthetas 100.0 1E-35 3.5E-40 340.5 25.2 348 431-845 50-457 (460)
31 1nj1_A PROR, proline-tRNA synt 100.0 1.1E-35 3.6E-40 344.1 22.8 312 432-844 58-412 (501)
32 2zt5_A Glycyl-tRNA synthetase; 100.0 8.3E-35 2.8E-39 346.5 23.7 385 432-845 88-657 (693)
33 1ati_A Glycyl-tRNA synthetase; 100.0 2.2E-32 7.5E-37 316.6 18.2 342 432-845 26-504 (505)
34 4hvc_A Bifunctional glutamate/ 100.0 1.1E-29 3.7E-34 292.9 26.7 322 432-845 48-413 (519)
35 3ial_A Prolyl-tRNA synthetase; 100.0 9.6E-30 3.3E-34 292.5 23.9 309 432-836 42-398 (518)
36 1g5h_A Mitochondrial DNA polym 99.9 3.6E-23 1.2E-27 236.1 11.0 322 435-845 51-438 (454)
37 3ikl_A DNA polymerase subunit 99.9 1.2E-20 4E-25 213.0 24.2 306 435-845 93-448 (459)
38 2dq3_A Seryl-tRNA synthetase; 99.7 1.1E-16 3.6E-21 181.3 10.9 142 433-579 160-325 (425)
39 2dq0_A Seryl-tRNA synthetase; 99.6 8.6E-16 3E-20 174.9 11.6 143 433-580 181-346 (455)
40 1ses_A Seryl-tRNA synthetase; 99.6 1.6E-15 5.5E-20 171.3 10.4 137 433-574 154-315 (421)
41 2cja_A Seryl-tRNA synthetase; 99.5 1.8E-14 6.2E-19 165.6 10.9 155 405-570 199-407 (522)
42 1nnh_A Asparaginyl-tRNA synthe 99.5 2E-13 6.8E-18 147.4 14.9 123 441-568 11-141 (294)
43 3dsq_A Pyrrolysyl-tRNA synthet 99.5 9.4E-14 3.2E-18 149.4 9.5 127 448-575 73-210 (288)
44 3vbb_A Seryl-tRNA synthetase, 99.4 4.2E-13 1.4E-17 153.4 12.4 144 434-579 190-366 (522)
45 1wle_A Seryl-tRNA synthetase; 99.4 1.4E-12 4.8E-17 149.4 12.0 141 433-575 207-372 (501)
46 3lss_A Seryl-tRNA synthetase; 99.3 3.8E-12 1.3E-16 144.6 12.1 143 434-579 197-364 (484)
47 3err_A Fusion protein of micro 99.3 9.7E-12 3.3E-16 143.9 12.4 141 434-579 264-429 (536)
48 3qne_A Seryl-tRNA synthetase, 99.3 9.4E-12 3.2E-16 141.3 11.6 143 434-579 174-341 (485)
49 3qtc_A Pyrrolysyl-tRNA synthet 99.2 2.6E-11 8.8E-16 130.8 12.8 122 448-575 79-213 (290)
50 1v95_A Nuclear receptor coacti 99.2 9.9E-11 3.4E-15 109.8 10.5 94 751-844 6-105 (130)
51 1x54_A Asparaginyl-tRNA synthe 98.9 1.5E-09 5.1E-14 123.1 10.3 113 442-567 132-250 (434)
52 1wyd_A Hypothetical aspartyl-t 98.9 5.2E-09 1.8E-13 118.4 11.9 112 443-567 132-249 (429)
53 1n9w_A Aspartyl-tRNA synthetas 98.8 1.8E-09 6.2E-14 121.8 6.0 113 442-567 122-241 (422)
54 1eov_A ASPRS, aspartyl-tRNA sy 98.7 4.3E-08 1.5E-12 112.6 12.9 114 442-567 175-295 (487)
55 3mf2_A BLL0957 protein; aminoa 98.7 2.9E-08 1E-12 107.4 10.7 140 435-577 54-233 (346)
56 3a74_A Lysyl-tRNA synthetase; 98.6 2E-07 7E-12 107.0 13.0 116 443-567 172-291 (493)
57 1e1o_A Lysyl-tRNA synthetase, 98.4 1.2E-06 4.2E-11 100.8 13.3 115 443-566 181-299 (504)
58 3a5y_A GENX, putative lysyl-tR 98.4 1.4E-06 4.9E-11 95.6 12.4 117 443-567 34-158 (345)
59 3l4g_A Phenylalanyl-tRNA synth 98.3 3.1E-06 1.1E-10 96.6 12.4 128 448-575 227-406 (508)
60 2xgt_A Asparaginyl-tRNA synthe 98.2 8.3E-06 2.8E-10 92.5 12.3 114 442-566 129-246 (435)
61 3nem_A Aspartyl-tRNA synthetas 98.1 1.3E-05 4.5E-10 90.7 11.8 113 444-566 136-253 (438)
62 1b7y_A Phers, protein (phenyla 98.0 3E-05 1E-09 85.2 13.7 127 448-575 103-254 (350)
63 2du3_A O-phosphoseryl-tRNA syn 97.9 2.3E-05 7.9E-10 89.9 10.3 77 499-575 180-265 (534)
64 1c0a_A Aspartyl tRNA synthetas 97.9 6.9E-05 2.4E-09 87.9 13.3 112 444-565 137-253 (585)
65 1l0w_A Aspartyl-tRNA synthetas 97.9 6.8E-05 2.3E-09 87.7 12.9 112 444-565 143-259 (580)
66 4ex5_A Lysine--tRNA ligase; st 97.8 0.00012 4.3E-09 84.2 13.5 113 444-565 203-319 (529)
67 3m4p_A Ehasnrs, asparaginyl-tR 97.8 6.3E-05 2.2E-09 85.5 11.0 113 443-566 154-270 (456)
68 3bju_A Lysyl-tRNA synthetase; 97.8 0.00013 4.5E-09 84.3 13.6 114 443-565 174-291 (521)
69 2du7_A O-phosphoseryl-tRNA syn 97.7 7.9E-05 2.7E-09 85.5 9.9 72 498-569 191-271 (549)
70 3i7f_A Aspartyl-tRNA synthetas 97.7 0.00014 4.8E-09 83.9 11.1 114 443-566 242-360 (548)
71 2rhq_A Phenylalanyl-tRNA synth 97.6 0.00023 7.7E-09 76.6 11.9 118 448-569 55-186 (294)
72 4ah6_A Aspartate--tRNA ligase, 97.6 0.00029 9.9E-09 82.5 13.6 114 444-567 147-265 (617)
73 2odr_B Phosphoseryl-tRNA synth 97.3 0.00093 3.2E-08 77.3 12.4 77 499-575 199-284 (648)
74 2odr_A Phosphoseryl-tRNA synth 97.3 0.00095 3.3E-08 77.3 12.4 77 499-575 199-284 (665)
75 2odr_D Phosphoseryl-tRNA synth 97.3 0.00097 3.3E-08 77.3 12.4 77 499-575 199-284 (685)
76 2odr_C Phosphoseryl-tRNA synth 97.3 0.0011 3.6E-08 77.2 12.2 77 499-575 199-284 (701)
77 3ig2_A Phenylalanyl-tRNA synth 97.0 0.0049 1.7E-07 62.9 12.8 128 448-576 6-162 (213)
78 3pco_A Phenylalanyl-tRNA synth 96.9 0.0012 4.2E-08 71.6 7.7 114 448-567 109-234 (327)
79 3ica_A Phenylalanyl-tRNA synth 96.9 0.0067 2.3E-07 61.9 12.7 129 448-577 6-163 (213)
80 3l4g_B Phenylalanyl-tRNA synth 96.9 0.0048 1.6E-07 72.5 12.4 122 449-570 394-525 (589)
81 2rhq_B Phenylalanyl-tRNA synth 96.3 0.016 5.3E-07 70.5 12.4 120 448-570 495-635 (795)
82 1b7y_B Phers, protein (phenyla 95.4 0.042 1.4E-06 66.5 10.6 116 448-574 491-626 (785)
83 3cmq_A Phenylalanyl-tRNA synth 94.3 0.059 2E-06 60.4 7.3 99 449-554 51-166 (415)
84 3pco_B Phenylalanyl-tRNA synth 90.6 0.6 2E-05 56.6 9.6 116 452-569 495-630 (795)
85 1gkm_A Histidase, HAL, histidi 85.6 0.31 1E-05 55.7 2.4 77 8-86 1-86 (507)
86 3unv_A ADMH; MIO, lyase; HET: 82.4 0.29 9.9E-06 56.2 0.4 76 9-86 27-111 (547)
87 2qve_A Tyrosine aminomutase; M 79.9 0.45 1.6E-05 54.5 0.9 75 10-86 2-85 (526)
88 2nyn_A Phenylalanine/histidine 77.1 0.64 2.2E-05 53.6 1.0 76 9-86 25-111 (565)
89 2o6y_A Putative histidine ammo 72.8 0.98 3.4E-05 51.7 1.1 76 10-89 11-95 (521)
90 1w27_A Phenylalanine ammonia-l 66.8 1.5 5.1E-05 51.8 0.9 80 8-89 55-144 (714)
91 2yii_A Phenylalanine ammonia-l 56.7 1.9 6.6E-05 50.8 -0.6 78 8-87 45-132 (705)
92 1y2m_A Phenylalanine ammonia-l 37.5 8.2 0.00028 45.7 0.6 58 8-68 58-121 (716)
93 1wyd_A Hypothetical aspartyl-t 36.0 12 0.00042 41.8 1.7 31 708-740 378-410 (429)
94 12as_A Asparagine synthetase; 32.6 3.4E+02 0.012 28.8 11.8 100 450-552 10-122 (330)
95 4grd_A N5-CAIR mutase, phospho 26.7 2.3E+02 0.008 27.3 8.6 55 754-808 13-74 (173)
96 1yfs_A Alanyl-tRNA synthetase; 26.2 4.6E+02 0.016 29.2 12.1 123 449-594 6-150 (465)
97 3kuu_A Phosphoribosylaminoimid 24.7 2.6E+02 0.0088 27.1 8.5 56 754-809 13-75 (174)
98 3lp6_A Phosphoribosylaminoimid 23.0 2.6E+02 0.009 27.0 8.2 56 754-809 8-70 (174)
99 1x54_A Asparaginyl-tRNA synthe 21.8 41 0.0014 37.5 2.7 33 708-740 383-415 (434)
100 1xmp_A PURE, phosphoribosylami 21.2 3.2E+02 0.011 26.3 8.4 54 755-808 13-73 (170)
101 3trh_A Phosphoribosylaminoimid 20.8 2.7E+02 0.0091 26.8 7.7 56 754-809 7-69 (169)
102 3oow_A Phosphoribosylaminoimid 20.5 3.9E+02 0.013 25.6 8.8 56 755-810 7-69 (166)
No 1
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=100.00 E-value=6.9e-82 Score=716.98 Aligned_cols=328 Identities=18% Similarity=0.128 Sum_probs=290.7
Q ss_pred ceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 003117 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVLI 97 (846)
Q Consensus 23 ~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~l 97 (846)
+||||||| +++++|++++.++||+|++ +|| ||+|++||+++|||||++|+|+|++|||| .+++++.|
T Consensus 76 ~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi--------rsHa~GvG~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L 147 (547)
T 3unv_A 76 VIYGVNTSMGGFVNYIVPIAKASELQNNLI--------NAVATNVGKYFDDTTVRATMLARIVSLSRGNSAISIVNFKKL 147 (547)
T ss_dssp CCBTTTBCCGGGTTCBCCGGGHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHHTSCSCCCHHHHHHH
T ss_pred ceeceecCCCCccCCccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHHccCCCCcCHHHHHHH
Confidence 68999999 7999999999999999999 999 99999999999999999999999999999 55799998
Q ss_pred HHhhhcCCccc---------------cc----------------------------cccccCcchhhhhhcCChhHHHHH
Q 003117 98 SETLNSQTETL---------------QF----------------------------ESVDVTEDERIVLEKLSLPSVLSG 134 (846)
Q Consensus 98 ~~~~~~g~~~~---------------~~----------------------------~p~~l~~keg~~l~~~~~~~~~~a 134 (846)
.+++|+|++|. |+ +|++|++|||++|.| | |++|+|
T Consensus 148 ~~lLN~~i~P~VP~~GSVGADLaPLahial~LiGeg~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiN-G-T~~~ta 225 (547)
T 3unv_A 148 IEIYNQGIVPCIPEKGSLGXDLGPLAAIALVCTGQWKARYQGEQMSGAMALEKAGISPMELSFKEGLALIN-G-TSAMVG 225 (547)
T ss_dssp HHHHHTTCEECCEEECCCSSCHHHHHHHHHHHTTCSEEEETTEEEEHHHHHHHHTCCCCCCCTTHHHHHHS-S-SHHHHH
T ss_pred HHHHhCCCcccCCCCCCCCccchHHHHHHHHHhCCCceEECCEEeeHHHHHHHcCCCCccCCcchHHHHhc-c-cHHHHH
Confidence 88777666553 11 699999999955555 4 469999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCC--------------
Q 003117 135 ICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG-------------- 200 (846)
Q Consensus 135 ~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~-------------- 200 (846)
+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.
T Consensus 226 ~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~r~~~~~~~~ 304 (547)
T 3unv_A 226 LGVLLYDEVKRLFDTYLTVTSLSIEGLHGKTKPFEPAV-HRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEMD 304 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHH-HTTSCCHHHHHHHHHHHHHTTTCSSSBCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcChHH-HhhCCCchHHHHHHHHHHHhcCCcccccccccccccccccc
Confidence 99999999999999999999999999999999999998 599999999999999999999999975
Q ss_pred ---------CCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCccc-------Cccccccch-----HHHHHHHHHHHH
Q 003117 201 ---------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV-------GISGTAKAV-----GANALALAAAIH 259 (846)
Q Consensus 201 ---------~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d~-------~~~~~~~~~-----~~~~d~l~~a~~ 259 (846)
.||||||||+||||||++|+++++++++++||||+||. +++.+|||| ++++|+|++|++
T Consensus 305 ~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~g~v~sgGNFhg~pva~amD~l~iAla 384 (547)
T 3unv_A 305 GLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAMDHLNIALV 384 (547)
T ss_dssp SSCCCCSCCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEETTTTEEECCCTTCTHHHHHHHHHHHHHHH
T ss_pred cccccccCcCcCCccccchhHHhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceecCCCccchhHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999992 347789999 455799999999
Q ss_pred HHHhHHHHHHHHhcCCCCCCCCCccccc-C-----------------CCCCCcccc---ccccccCCCcccccccchHHH
Q 003117 260 NLGESSLYRAKMNLNSINSDGLRSLFEK-D-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHEA 318 (846)
Q Consensus 260 ~l~~~serR~~~l~~~~~~~gLp~fL~~-~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~~~ 318 (846)
++|+|||||+++|+||.+|+|||+||++ + ++||+.|++ +||+|||++ ||||||||+.+
T Consensus 385 ~lg~iserR~~~Lvnp~~s~GLP~fL~~~~~glnsGfmi~Q~taaal~sE~k~La~PaSvds~pts~~-qED~vSmg~~a 463 (547)
T 3unv_A 385 TMMNLANRRIDRFMDKSNSNGLPPFLCAENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGD-FQDIVSFGLVA 463 (547)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCCGGGCCSSBTTBCTTTTHHHHHHHHHHHHHHTCCCSTTCCCCBTTT-TBCSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCChhhcCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCCccccCc-chhhHhhHHHH
Confidence 9999999999999999998899999998 5 123333555 899999999 99999999986
Q ss_pred HHH----HHHHHHHHHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHH
Q 003117 319 NVL----LGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (846)
Q Consensus 319 ~~~----~~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (846)
+++ ++|+++|+|||||+||||+||+. ...+|.++.-+...+.+.
T Consensus 464 Ark~~~~ven~~~vlAiEll~a~QAidlr~----------------------~~~~s~~~~~~~~~vR~~ 511 (547)
T 3unv_A 464 ARRVREQLKNLKYVFSFELLCACQAVDIRG----------------------TAGLSKRTRALYDKTRTL 511 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------STTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------ccCCCHHHHHHHHHHHHh
Confidence 665 58899999999999999999982 112577777777666644
No 2
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=100.00 E-value=6.8e-80 Score=701.44 Aligned_cols=330 Identities=20% Similarity=0.216 Sum_probs=291.2
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|+++++++||+|++ +|| ||+|++||+++|||||++|+|+|++|||| .+++++.
T Consensus 49 ~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~ 120 (526)
T 2qve_A 49 IPIYGVTTGYGEMIYMQVDKSKEVELQTNLV--------RSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILER 120 (526)
T ss_dssp CCCTTTSBCSGGGGGEEECGGGHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CceeeeccCCCcccCCCcCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHH
Confidence 469999999 6999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCccc---------------cc----------------------------cccccCcchhhhhhcCChhHHHH
Q 003117 97 ISETLNSQTETL---------------QF----------------------------ESVDVTEDERIVLEKLSLPSVLS 133 (846)
Q Consensus 97 l~~~~~~g~~~~---------------~~----------------------------~p~~l~~keg~~l~~~~~~~~~~ 133 (846)
|.+++|+|++|. |+ +|++|++|||++|.| | |++|+
T Consensus 121 l~~~LN~~i~P~VP~~GSvGADLaPLahial~LiGeg~v~~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiN-G-T~~~t 198 (526)
T 2qve_A 121 LAQYLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALIN-G-TSGMT 198 (526)
T ss_dssp HHHHHHTTCEECCEEECCCSSCHHHHHHHHHHHTTCSEEEETTEEEEHHHHHHTTTCCCCCCCTTHHHHHHS-S-SHHHH
T ss_pred HHHHHhCCCccccCCCCCcchhhHHHHHHHHHHcCCCceeECCEeecHHHHHHHcCCCCCCCCchHHHHHhc-C-ChHHH
Confidence 887777665552 11 699999999955555 4 46999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCC-CCChhHHHHHHHHHHHhcCCCCCCC-----------
Q 003117 134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDG-FTAKEEIGVAGDLKVLLNGSKLVGK----------- 201 (846)
Q Consensus 134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~-rph~gq~~~A~~~r~lL~gS~~~~~----------- 201 (846)
|+++++++++++|+++||+++|||+||++|+++||||++ |++ ||||||+++|++||.+|+||+++.+
T Consensus 199 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~~Rph~GQ~~~A~~lr~lL~gS~l~~~~~~~~~~~~~~ 277 (526)
T 2qve_A 199 GLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEG-HDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKD 277 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCGGG-TTTTCCCHHHHHHHHHHHHHHTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HhccCCCchHHHHHHHHHHHhccCcccccchhhhcccccc
Confidence 999999999999999999999999999999999999998 599 9999999999999999999999753
Q ss_pred --------------CCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----c--Cccccccch-----HHHHHHHHH
Q 003117 202 --------------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK----V--GISGTAKAV-----GANALALAA 256 (846)
Q Consensus 202 --------------~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~--~~~~~~~~~-----~~~~d~l~~ 256 (846)
||||||||+||||||++|+++++++++++||||+|| | +++.+|||| ++++|+|++
T Consensus 278 ~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~~v~sgGNFhg~~va~a~D~l~i 357 (526)
T 2qve_A 278 KEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTI 357 (526)
T ss_dssp CCSSCSEECCSCCSSCCGGGTSHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSBCCTTSCCBCSCTTCCHHHHHHHHHHHH
T ss_pred cccccccccccCcCcCCeeccchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCceecCCCccchhHHHHHHHHHH
Confidence 499999999999999999999999999999999999 3 347789999 445799999
Q ss_pred HHHHHHhHHHHHHHHhcCCCCCCCCCccc-ccCCCCCCc------------------ccc--ccccccCCCcccccccch
Q 003117 257 AIHNLGESSLYRAKMNLNSINSDGLRSLF-EKDCSSGDN------------------LRK--TYKLVLDANFEEDYVKFL 315 (846)
Q Consensus 257 a~~~l~~~serR~~~l~~~~~~~gLp~fL-~~~~~~~~~------------------~~~--~ds~~~s~~~qedhvsm~ 315 (846)
|++++|+|||||+++|+||.+|+|||+|| +++ ++.++ ++- +||+|||++ ||||||||
T Consensus 358 Ala~lg~lserR~~~L~d~~~~~gLP~fL~~~~-~glnsGfm~~q~taaal~sE~k~LaPaSvds~pts~~-~ED~vSmg 435 (526)
T 2qve_A 358 ALTQLGVLAERQINRVLNRHLSYGLPEFLVSGD-PGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGD-NQDVVSMG 435 (526)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSSSCCGGGCSSC-BTTBCTTHHHHHHHHHHHHHHTTCCCSTTCCCCBTTT-TBCSCCCH
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCChhcCCCC-CCcCcccHHHHHHHHHHHHHHHHhCCCccCCccccCC-CccccccH
Confidence 99999999999999999999877999999 765 44432 332 899999999 99999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHHh
Q 003117 316 HEANVL----LGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRL 385 (846)
Q Consensus 316 ~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (846)
+.++++ ++|+++|+|||+++||||+||+.. ...+|.+++-+...+.+..
T Consensus 436 ~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~---------------------~~~~~~~~~~~~~~vR~~v 488 (526)
T 2qve_A 436 LISARNARRVLSNNNKILAVEYLAAAQAVDISGR---------------------FDGLSPAAKATYEAVRRLV 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------GGGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------ccCCChhHHHHHHHHHHhC
Confidence 986666 588999999999999999999820 0117888888887777653
No 3
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=100.00 E-value=6.1e-81 Score=707.26 Aligned_cols=327 Identities=19% Similarity=0.155 Sum_probs=289.4
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|+++++++||+|++ +|| ||+|++||+++|||||++|+|+|++|||| .+++++.
T Consensus 50 ~~vYGvnTGfG~~~~~~I~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evv~~ 121 (507)
T 1gkm_A 50 RTAYGINTGFGLLASTRIASHDLENLQRSLV--------LSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121 (507)
T ss_dssp CCCTTTTBCSGGGTTCBCCHHHHHHHHHHHH--------HHHCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CceeeeccCCCcccCcccCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCcCcHHHHHH
Confidence 369999999 6999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCcccc---------------c----------------------------cccccCcchhhhhhcCChhHHHH
Q 003117 97 ISETLNSQTETLQ---------------F----------------------------ESVDVTEDERIVLEKLSLPSVLS 133 (846)
Q Consensus 97 l~~~~~~g~~~~~---------------~----------------------------~p~~l~~keg~~l~~~~~~~~~~ 133 (846)
|.+++|+|++|.+ + +|++|++|||++|.| + |++|+
T Consensus 122 l~~~LN~~i~P~VP~~GSvGGDLapLahial~LiGeg~v~~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiN-G-T~~~t 199 (507)
T 1gkm_A 122 LIALVNAEVYPHIPLKGSVGXDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLN-G-TQAST 199 (507)
T ss_dssp HHHHHHHTEEECCEEECCCCCSHHHHHHHHHGGGTCSEEEETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHS-B-SHHHH
T ss_pred HHHHHHCCCcccCCCCCCcchhhHHHHHHHHHHcCCCceeECCEEeeHHHHHHHcCCCCCCCCcchhHHhhc-C-cHHHH
Confidence 9887776666531 1 699999999955444 4 46999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHh-cCCCCCCC-------CCcc
Q 003117 134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLL-NGSKLVGK-------MKSE 205 (846)
Q Consensus 134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL-~gS~~~~~-------~D~y 205 (846)
|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+| +||+++.+ ||||
T Consensus 200 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-~~~Rph~GQ~~~A~~lr~lL~~gS~l~~~~~~~~~vQD~Y 278 (507)
T 1gkm_A 200 AYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARI-HEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPY 278 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGCHHH-HHHHCCHHHHHHHHHHHHHHCSCCHHHHHTTTGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HHhccCchHHHHHHHHHHHHHcCChhhhccCCCCcCcCCc
Confidence 999999999999999999999999999999999999998 59999999999999999999 99998753 4999
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----c---Cccccccch-----HHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003117 206 DILEIPKINGKLREVVKSVHSSTRVELNSSVK----V---GISGTAKAV-----GANALALAAAIHNLGESSLYRAKMNL 273 (846)
Q Consensus 206 slRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~---~~~~~~~~~-----~~~~d~l~~a~~~l~~~serR~~~l~ 273 (846)
||||+||||||++|+++++++++++||||+|| | +++.+|||| ++++|+|++|++++|+|||||+++|+
T Consensus 279 SlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~ 358 (507)
T 1gkm_A 279 SLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISLMM 358 (507)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 3 347789999 44579999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCc------------------ccc---ccccccCCCcccccccchHHHHHH----HHHHHHH
Q 003117 274 NSINSDGLRSLFEKDCSSGDN------------------LRK---TYKLVLDANFEEDYVKFLHEANVL----LGMVWKI 328 (846)
Q Consensus 274 ~~~~~~gLp~fL~~~~~~~~~------------------~~~---~ds~~~s~~~qedhvsm~~~~~~~----~~~~~~i 328 (846)
||.+| |||+||+++ ++.++ +++ +||+|||++ ||||||||+.++++ ++|+++|
T Consensus 359 d~~~s-gLP~fL~~~-~glnsGfmi~q~taaal~sE~k~La~PaSvds~pts~~-qED~vSmg~~aArk~~~~v~n~~~v 435 (507)
T 1gkm_A 359 DKHMS-QLPPFLVEN-GGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSAN-QEDHVSMAPAAGKRLWEMAENTRGV 435 (507)
T ss_dssp CHHHH-SSCGGGCSS-TTTCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTT-TBCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-CCChhhcCC-CCcCccchHHHHHHHHHHHHHHHhcCCcccCCccccCc-cccccccHHHHHHHHHHHHHHHHHH
Confidence 99987 999999987 44443 554 899999999 99999999986666 5889999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHH
Q 003117 329 VTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (846)
Q Consensus 329 laiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (846)
+|||+++||||+||+.. ..+|.+++-+...+.+.
T Consensus 436 lAiEll~a~QAidlr~~----------------------~~~~~~~~~~~~~vR~~ 469 (507)
T 1gkm_A 436 LAIEWLGACQGLDLRKG----------------------LKTSAKLEKARQALRSE 469 (507)
T ss_dssp HHHHHHHHHHHHHTSTT----------------------CCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc----------------------cCCChHHHHHHHHHHHh
Confidence 99999999999999820 12677777777666543
No 4
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=100.00 E-value=1.3e-79 Score=700.60 Aligned_cols=339 Identities=17% Similarity=0.176 Sum_probs=282.2
Q ss_pred ceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 003117 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVLI 97 (846)
Q Consensus 23 ~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~l 97 (846)
+||||||| +++++|++++.++||+|++ +|| ||+|++||+++|||||++|+|+|++|||| .+++++.|
T Consensus 76 ~vYGvnTGfG~~a~~~I~~~~~~~LQ~nLi--------rsHa~GvG~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L 147 (565)
T 2nyn_A 76 PIYGVTSGFGGMANVAISREQASELQTNLV--------WFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKRM 147 (565)
T ss_dssp ----------------CCSHHHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHH
T ss_pred ceeeeccCCCcccCcccCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHHH
Confidence 59999999 7999999999999999999 999 99999999999999999999999999999 45788888
Q ss_pred HHhhhc---------CCccc------cc-------------------------------cccccCcchhhhhhcCChhHH
Q 003117 98 SETLNS---------QTETL------QF-------------------------------ESVDVTEDERIVLEKLSLPSV 131 (846)
Q Consensus 98 ~~~~~~---------g~~~~------~~-------------------------------~p~~l~~keg~~l~~~~~~~~ 131 (846)
.+++|+ ||||+ |+ +|++|++|||++|.| | |++
T Consensus 148 ~~lLN~~i~P~VP~~GSVGADLaPLAhial~LiGeg~~~~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiN-G-T~~ 225 (565)
T 2nyn_A 148 EIFLNAGVTPYVYEFGSIGXDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMN-G-TSV 225 (565)
T ss_dssp HHHHHHTEEECCEEESCCSSCHHHHHHHHHHHTTCCTTSEEEETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHS-S-SHH
T ss_pred HHHHhCCCccccCCCCCccchHHHHHHHHHHHhCCCCCceEEECCEEeeHHHHHHHcCCCCccCCCchhhhhhc-C-ChH
Confidence 876665 45543 11 599999999955555 4 469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC----------
Q 003117 132 LSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK---------- 201 (846)
Q Consensus 132 ~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~---------- 201 (846)
|+|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 226 ~ta~a~lal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~ 304 (565)
T 2nyn_A 226 MTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFI-HNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRD 304 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHH-HHTSCCHHHHHHHHHHHHHHTTCSSSBCCTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhCHHH-HHhCCCchHHHHHHHHHHHhccCccccccccccccccC
Confidence 99999999999999999999999999999999999999998 5999999999999999999999999876
Q ss_pred ----CCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----c---Cccccccch-----HHHHHHHHHHHHHHHhHH
Q 003117 202 ----MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK----V---GISGTAKAV-----GANALALAAAIHNLGESS 265 (846)
Q Consensus 202 ----~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~---~~~~~~~~~-----~~~~d~l~~a~~~l~~~s 265 (846)
||||||||+||||||++|+++++++++++||||+|| | +++.+|||| ++++|+|++|++++|+||
T Consensus 305 ~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sgGNFhg~~va~a~D~l~iAla~lg~ls 384 (565)
T 2nyn_A 305 HELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHL 384 (565)
T ss_dssp ---CCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCcccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCeeccCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999 3 347789999 445799999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcccccCC-CCCCc------------------ccc----ccccccCCCcccccccchHHHHHH-
Q 003117 266 LYRAKMNLNSINSDGLRSLFEKDC-SSGDN------------------LRK----TYKLVLDANFEEDYVKFLHEANVL- 321 (846)
Q Consensus 266 erR~~~l~~~~~~~gLp~fL~~~~-~~~~~------------------~~~----~ds~~~s~~~qedhvsm~~~~~~~- 321 (846)
|||+++|+||.+|+|||+||+++. ++.++ +++ +||+|||++ ||||||||+.++++
T Consensus 385 erR~~~Lvdp~~s~GLP~fL~~~~~~glnsGfmi~q~taaal~sE~k~La~P~aSvds~pts~~-qED~vSmg~~aArk~ 463 (565)
T 2nyn_A 385 DVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQF-NQNINSQGYTSATLA 463 (565)
T ss_dssp HHHHHHHHCTTTTTSCCGGGCSCTTSTTCCTTHHHHHHHHHHHHHHHHHTSCCGGGCCTTTTTT-TCSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCcccCCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCeecccccccCC-CccccccHHHHHHHH
Confidence 999999999998889999999762 33333 333 799999999 99999999986666
Q ss_pred ---HHHHHHHHHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHHhc
Q 003117 322 ---LGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQ 386 (846)
Q Consensus 322 ---~~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (846)
++|+++|+|||+++||||+||+..+. .++ + .++..+|.+++-+...+.+.+-
T Consensus 464 ~~~v~n~~~vlAiEll~a~QAidlr~~~~---~~~------~----~~~~~~~~~~~~~~~~vR~~vp 518 (565)
T 2nyn_A 464 RRSVDIFQNYVAIALMFGVQAVDLRTYKK---TGH------Y----DARACLSPATERLYSAVRHVVG 518 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSS------C----CGGGTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccc------c----cccccCChhHHHHHHHHHHhCC
Confidence 58899999999999999999983211 000 0 1123489999988888887654
No 5
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=100.00 E-value=4.8e-79 Score=693.79 Aligned_cols=331 Identities=18% Similarity=0.167 Sum_probs=290.0
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCCCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHHH
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSI-RTAFAVL 96 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~~l~~~~vRa~m~~rln~l~~G~SG-~~~~~~~ 96 (846)
.+||||||| +++++|+++++++||+|++ +|| ||+|++||+++|||||++|+|+|++|||| .+++++.
T Consensus 57 ~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nLi--------~sha~GvG~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~ 128 (521)
T 2o6y_A 57 RHVYGLTTGFGPLANRLISGENVRTLQANLV--------HHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIAR 128 (521)
T ss_dssp BCCTTTSBCSGGGGGBBCCGGGHHHHHHHHH--------HHHCCCEEEECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHH
T ss_pred CCcceecCCCCcccCccCCHHHHHHHHHHHH--------HHHhccCCCCCCHHHHHHHHHHHHHHHccCCCcCcHHHHHH
Confidence 369999999 7999999999999999999 999 99999999999999999999999999999 5579999
Q ss_pred HHHhhhcCCcc---------c------cc-----------------------------cccccCcchhhhhhcCChhHHH
Q 003117 97 ISETLNSQTET---------L------QF-----------------------------ESVDVTEDERIVLEKLSLPSVL 132 (846)
Q Consensus 97 l~~~~~~g~~~---------~------~~-----------------------------~p~~l~~keg~~l~~~~~~~~~ 132 (846)
|.+++|+|++| + |+ +|++|++|||++|.| | |++|
T Consensus 129 l~~~LN~~i~P~VP~~GSvGADLaPLahial~LiGeg~v~~~~G~~~~a~eaL~~aGl~P~~L~~KEGLALiN-G-T~~~ 206 (521)
T 2o6y_A 129 LIDLLNSELAPAVPSRGTVGXDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVN-G-TSAM 206 (521)
T ss_dssp HHHHHTSSCEECCEEECCCSSCHHHHHHHHHHHTTSSCEECTTCCEECHHHHHHHTTCCCCCCTTSCGGGTSC-T-THHH
T ss_pred HHHHHhCCCcccCCCCCCcccchHHHHHHHHHHcCCCceEeeCCEEecHHHHHHHcCCCCCCCCcchHHHhhc-C-ChHH
Confidence 99877766555 2 11 599999999955555 4 5699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC-----------
Q 003117 133 SGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK----------- 201 (846)
Q Consensus 133 ~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~----------- 201 (846)
+|+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 207 ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~ 285 (521)
T 2o6y_A 207 TGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAAL-SDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAG 285 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCHHH-HHHSCCHHHHHHHHHHHHHTTTCSSSBCCCGGGCBCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHH-HhcCCCchHHHHHHHHHHHhccCcccccccccccccccc
Confidence 9999999999999999999999999999999999999998 5999999999999999999999998642
Q ss_pred ---------CCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcc---c---C--ccccccch-----HHHHHHHHHHHH
Q 003117 202 ---------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK---V---G--ISGTAKAV-----GANALALAAAIH 259 (846)
Q Consensus 202 ---------~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d---~---~--~~~~~~~~-----~~~~d~l~~a~~ 259 (846)
||||||||+||||||++|+++++++++++||||+|| | + ++.+|||| ++++|+|++|++
T Consensus 286 ~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~l~~ElNS~tDNPl~~~~~~~~v~sgGNFhg~~va~a~D~l~iAla 365 (521)
T 2o6y_A 286 DIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVT 365 (521)
T ss_dssp GCSBCSSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSBCCTTCSSSCBCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccCcCcCcccccchhhhhHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCceeccCCCccchhHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999 4 4 57789999 445799999999
Q ss_pred HHHhHHHHHHHHhcCCCCCCCCCccc-ccCCCCCCc------------------ccc--ccccccCCCcccccccchHHH
Q 003117 260 NLGESSLYRAKMNLNSINSDGLRSLF-EKDCSSGDN------------------LRK--TYKLVLDANFEEDYVKFLHEA 318 (846)
Q Consensus 260 ~l~~~serR~~~l~~~~~~~gLp~fL-~~~~~~~~~------------------~~~--~ds~~~s~~~qedhvsm~~~~ 318 (846)
++|+|||||+++|+||.+|+|||+|| +++ ++.++ ++- +||+|||++ ||||||||+.+
T Consensus 366 ~l~~iserR~~~L~~~~~~~gLP~fL~~~~-~glnsGfm~~q~taaal~sE~k~LaPaS~ds~pts~~-~ED~vSmg~~a 443 (521)
T 2o6y_A 366 VLAGLAERQIARLTDERLNRGLPPFLHRGP-AGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAA-NQDVVSLGTIA 443 (521)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTCCGGGCCSS-BTTBCTTHHHHHHHHHHHHHHHTBCCSGGGCCCBTTT-TBCSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcccccCCChhcCCCC-CCcccchHHHHHHHHHHHHHHHHhCCCccCcccccCC-ccchhhhHHHH
Confidence 99999999999999999888999999 765 44443 322 899999999 99999999986
Q ss_pred HHH----HHHHHHHHHHHHHHHHHhhhcccccccccCCCccccchhhhhhhhchhcCchhHHHHHHHHHH
Q 003117 319 NVL----LGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDR 384 (846)
Q Consensus 319 ~~~----~~~~~~ilaiEl~~a~qa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (846)
+++ ++|+++|+|||+++||||+||+.. . + ...+|.+++-+...+.+.
T Consensus 444 Ark~~~~v~n~~~vlAiell~a~QAidlr~~----~----------~-----~~~~~~~~~~~~~~vR~~ 494 (521)
T 2o6y_A 444 ARLCREKIDRWAEILAILALCLAQAAELRCG----S----------G-----LDGVSPAGKKLVQALREQ 494 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T----------T-----TTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c----------c-----ccCCChhHHHHHHHHHHh
Confidence 666 588999999999999999999830 0 0 011677887777666543
No 6
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=100.00 E-value=2.3e-77 Score=693.46 Aligned_cols=308 Identities=19% Similarity=0.175 Sum_probs=266.6
Q ss_pred ceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCC-CC----CCCHHHHHHHHHHHHHHhcCCCCC-hhh
Q 003117 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPI-PK----TLTLEESRAFLTVLLNKLLLGSSI-RTA 92 (846)
Q Consensus 23 ~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~-g~----~l~~~~vRa~m~~rln~l~~G~SG-~~~ 92 (846)
+||||||| ++++++ ++..+||+|++ +|| ||+ |+ +||+++|||||++|+|+|++|||| .++
T Consensus 108 ~VYGVnTGFG~la~~~~--~~~~~LQ~nLi--------rsHa~Gv~G~~~~~~lp~~~vRA~MllRlnsL~~G~SGVr~e 177 (714)
T 1w27_A 108 DSYGVTTGFGATSHRRT--KQGGALQKELI--------RFLNAGIFGNGSDNTLPHSATRAAMLVRINTLLQGYSGIRFE 177 (714)
T ss_dssp TSCSCCCSSCTTSCSSS--SSCSHHHHHHH--------HHHCCCCCCSSSTTBCCHHHHHHHHHHHHHTTTTSCSCCCHH
T ss_pred eeccccCCCCCcccccH--HHHHHHHHHHH--------HHHhCCcCCCCCCCCCCHHHHHHHHHHHHHHHccCCCCCCHH
Confidence 45666665 455554 45556666666 999 999 98 999999999999999999999999 557
Q ss_pred HHHHHHHhhhcCCccccc----------------------------------------------c--ccccCcchhhhhh
Q 003117 93 FAVLISETLNSQTETLQF----------------------------------------------E--SVDVTEDERIVLE 124 (846)
Q Consensus 93 ~~~~l~~~~~~g~~~~~~----------------------------------------------~--p~~l~~keg~~l~ 124 (846)
+++.|.+++|+|++|.++ + |++|++|||++|.
T Consensus 178 vve~L~~lLN~gi~P~VP~~GSVGGDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~~aGl~~~Pl~L~~KEGLALi 257 (714)
T 1w27_A 178 ILEAITKFLNQNITPCLPLRGTITXDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALV 257 (714)
T ss_dssp HHHHHHHHHHTTCEECCBSSCCCSSCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHHHHTCSSSCCCCCTTHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCCCCccccchHHHHHHHHHhCCCcccccccCCccccHHHHHHHcCCCCCCCCCCCcchhhhh
Confidence 999999877766665211 4 9999999995555
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCCCC---
Q 003117 125 KLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGK--- 201 (846)
Q Consensus 125 ~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~~~--- 201 (846)
| + |++|+|++++++++|++|+++|++++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.+
T Consensus 258 N-G-Ta~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~i-h~~RpHpGQ~~~A~~ir~lL~gS~l~~~~~~ 334 (714)
T 1w27_A 258 N-G-TAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLT-HKLKHHPGQIEAAAIMEHILDGSAYVKAAQK 334 (714)
T ss_dssp S-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHH-HHTTCCHHHHHHHHHHHHHHHTCSSCCCCCS
T ss_pred c-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHH-HhhCCChhHHHHHHHHHHHhCccchhhhccc
Confidence 5 4 46999999999999999999999999999999999999999998 5999999999999999999999998432
Q ss_pred -----------CCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----c---Cccccccch-----HHHHHHHHHHH
Q 003117 202 -----------MKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK----V---GISGTAKAV-----GANALALAAAI 258 (846)
Q Consensus 202 -----------~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~---~~~~~~~~~-----~~~~d~l~~a~ 258 (846)
||||||||+||||||++|+++++++++++||||++| | +++.+|||| ++++|+|++|+
T Consensus 335 ~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvA~AmD~L~iAl 414 (714)
T 1w27_A 335 LHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAI 414 (714)
T ss_dssp SCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCCccchHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999 2 347789999 45579999999
Q ss_pred HHHHhHHHHHHHHhcCCCCCCCCCcccccC-------------------CCCCCcccc---ccccccCCCcccccccchH
Q 003117 259 HNLGESSLYRAKMNLNSINSDGLRSLFEKD-------------------CSSGDNLRK---TYKLVLDANFEEDYVKFLH 316 (846)
Q Consensus 259 ~~l~~~serR~~~l~~~~~~~gLp~fL~~~-------------------~~~~~~~~~---~ds~~~s~~~qedhvsm~~ 316 (846)
+++|+|||||+++|+||.+|+|||+||+++ +++++.|++ +||+|||++ ||||||||+
T Consensus 415 a~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~-qEDhvSmg~ 493 (714)
T 1w27_A 415 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQH-NQDVNSLGL 493 (714)
T ss_dssp HHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTT-TBSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCccccCC-cccccccHH
Confidence 999999999999999999888999999853 233344555 899999999 999999999
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhhhccc
Q 003117 317 EANVL----LGMVWKIVTWEAVLAFVALEGGE 344 (846)
Q Consensus 317 ~~~~~----~~~~~~ilaiEl~~a~qa~~~~~ 344 (846)
.++++ ++|+++|+||||++||||+||+.
T Consensus 494 ~aArk~~~~venl~~vlAiELl~a~QAiDlR~ 525 (714)
T 1w27_A 494 ISSRKTSEAVEILKLMSTTFLVGLCQAIDLRH 525 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 86666 58899999999999999999983
No 7
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=100.00 E-value=1.5e-76 Score=688.14 Aligned_cols=308 Identities=19% Similarity=0.196 Sum_probs=264.2
Q ss_pred ceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCCC--------------CCCHHHHHHHHHHHHHHhc
Q 003117 23 SVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPK--------------TLTLEESRAFLTVLLNKLL 84 (846)
Q Consensus 23 ~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g~--------------~l~~~~vRa~m~~rln~l~ 84 (846)
+||||||| +++++| ++..+||+|++ +|| ||+|+ +||+++|||||++|+|+|+
T Consensus 108 ~vYGVnTGfG~~a~~~i--~~~~~LQ~nLi--------rsHa~GvG~~~~~~~~~~~~~~~~lp~~~vRa~MllRlnsL~ 177 (716)
T 1y2m_A 108 SVYGVTTGFGGSADTRT--EDAISLQKALL--------EHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLT 177 (716)
T ss_dssp ----------------C--HHHHHHHHHHH--------HHHCCCCCCSCGGGCBTTBSCTTBCCHHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCcccCcch--hHHHHHHHHHH--------HHHhcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHc
Confidence 79999999 788999 88999999999 999 99999 9999999999999999999
Q ss_pred CCCCC-hhhHHHHHHHhhhcCCccccc---------------------------------------------------cc
Q 003117 85 LGSSI-RTAFAVLISETLNSQTETLQF---------------------------------------------------ES 112 (846)
Q Consensus 85 ~G~SG-~~~~~~~l~~~~~~g~~~~~~---------------------------------------------------~p 112 (846)
+|||| .+++++.|.+++|+|++|.++ +|
T Consensus 178 ~G~SGVr~evle~L~~lLN~~i~P~VP~~GSVGASGDLaPLAhial~LiGeg~v~~~~~~~~~G~~~~a~eAL~~aGl~P 257 (716)
T 1y2m_A 178 RGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEP 257 (716)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTCEECCBSSCCCC-CBSHHHHHHHHHHHTTCTTCEEEEEETTEEEEEEHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHHHhCCCeeccCCCCCCCccccHHHHHHHHHHHcCCCCeEEecccCCCCeEeeHHHHHHHcCCCC
Confidence 99999 457999988877766655211 59
Q ss_pred cccCcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCC-CCChhHHHHHHHHHH
Q 003117 113 VDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDG-FTAKEEIGVAGDLKV 191 (846)
Q Consensus 113 ~~l~~keg~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~-rph~gq~~~A~~~r~ 191 (846)
++|++|||++|.| | |++|+|++++++++|++|+++||+++|||+||++|+++||||++ |++ ||||||+++|++||.
T Consensus 258 l~L~~KEGLALiN-G-Ta~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~~RpHpGQ~~~A~~ir~ 334 (716)
T 1y2m_A 258 VVLGPKEGLGLVN-G-TAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFL-HDVTRPHPTQIEVAGNIRK 334 (716)
T ss_dssp CCCCTTHHHHHHS-B-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCGGG-TTTTSCCHHHHHHHHHHHH
T ss_pred ccCCCchhHHhhc-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhCHHH-HhccCCCchHHHHHHHHHH
Confidence 9999999955544 4 46999999999999999999999999999999999999999998 599 999999999999999
Q ss_pred HhcCCCCCCC---------------CCcccccchhhHhHHHHHHHHHHHHHHHHHH-hcCccc-------Cccccccch-
Q 003117 192 LLNGSKLVGK---------------MKSEDILEIPKINGKLREVVKSVHSSTRVEL-NSSVKV-------GISGTAKAV- 247 (846)
Q Consensus 192 lL~gS~~~~~---------------~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~El-Ns~~d~-------~~~~~~~~~- 247 (846)
+|+||+++.+ ||||||||+||||||++|+|+++++++++|| ||++|. +++.+||||
T Consensus 335 lL~gS~l~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~El~NS~tDNPlI~~~~g~v~sGGNFh 414 (716)
T 1y2m_A 335 LLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQ 414 (716)
T ss_dssp HHTTCSSSBCHHHHC----CCCCCCSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSEEETTTTEEECCCTTC
T ss_pred HhccCcchhhhhhhcccccccCCcCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeCCCCeeecCCCcc
Confidence 9999999764 4999999999999999999999999999999 999993 347789999
Q ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCcccccCCCC------------------CCcccc---ccccc
Q 003117 248 ----GANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSS------------------GDNLRK---TYKLV 302 (846)
Q Consensus 248 ----~~~~d~l~~a~~~l~~~serR~~~l~~~~~~~gLp~fL~~~~~~------------------~~~~~~---~ds~~ 302 (846)
+.++|+|++|++++|+|||||+++|+||.+|+|||+||+.+.++ ++.+++ +||+|
T Consensus 415 g~~va~amD~l~iAla~lg~lserR~~~Lvnp~~~~GLP~fL~~~~~glnsG~m~~q~taAal~sE~k~LA~PaSvds~p 494 (716)
T 1y2m_A 415 AAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQP 494 (716)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCCCCCCcCcchHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 44579999999999999999999999999888999999765233 333555 89999
Q ss_pred cCCCcccccccchHHHHHH----HHHHHHHHHHHHHHHHHhhhccc
Q 003117 303 LDANFEEDYVKFLHEANVL----LGMVWKIVTWEAVLAFVALEGGE 344 (846)
Q Consensus 303 ~s~~~qedhvsm~~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~ 344 (846)
||++ ||||||||+.++++ ++|+++|+|||+++||||+||+.
T Consensus 495 ts~~-~ED~vSmg~~aArk~~~~venl~~vlAiEll~a~QAidlR~ 539 (716)
T 1y2m_A 495 AEMA-NQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRA 539 (716)
T ss_dssp BTTT-TBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 99999999986666 58899999999999999999984
No 8
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=100.00 E-value=6e-77 Score=689.11 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=276.3
Q ss_pred cceeEeecC---CcccccChhHHHHHHhcCCCCCCCCCcccc-cCCC--------CCCCHHHHHHHHHHHHHHhcCCCCC
Q 003117 22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIP--------KTLTLEESRAFLTVLLNKLLLGSSI 89 (846)
Q Consensus 22 ~~vygi~tg---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~g~g--------~~l~~~~vRa~m~~rln~l~~G~SG 89 (846)
.+||||||| +++++| ++..+||+|++ +|| ||+| ++||+++|||||++|+|+|++||||
T Consensus 97 ~~VYGVnTGFG~la~~~~--~~~~~LQ~nLi--------rsHa~GvG~~G~~~~~~~lp~~~vRa~MllRlnsL~~G~SG 166 (705)
T 2yii_A 97 ADIYGVTTGFGACSSRRT--NRLSELQESLI--------RCLLAGVFTKGCAPSVDELPATATRSAMLLRLNSFTYGCSG 166 (705)
T ss_dssp CCCTTTSBCCGGGTTCBC--SCHHHHHHHHH--------HHHCCCCCCC-----CCCBCHHHHHHHHHHHHHHHTTSCSC
T ss_pred CeeeeeecCCCccccccH--HHHHHHHHHHH--------HHHhcCccCCCCccCCCCCCHHHHHHHHHHHHHHHccCCCC
Confidence 369999999 688887 88999999999 999 9998 9999999999999999999999999
Q ss_pred -hhhHHHHHHHhhhcCCccccc----------------------------------------------cccccCcchhhh
Q 003117 90 -RTAFAVLISETLNSQTETLQF----------------------------------------------ESVDVTEDERIV 122 (846)
Q Consensus 90 -~~~~~~~l~~~~~~g~~~~~~----------------------------------------------~p~~l~~keg~~ 122 (846)
.+++++.|.+++|+|++|.++ +|++|++|||++
T Consensus 167 Vr~evve~L~~lLN~~I~P~VP~~GSVSGDLaPLAhial~LiGeG~v~~~~~~G~~~~a~eAL~~aGl~Pl~L~~KEGLA 246 (705)
T 2yii_A 167 IRWEVMEALEKLLNSNVSPKVPLRGSVSXDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLA 246 (705)
T ss_dssp CCHHHHHHHHHHHHTTEEECBCSCCCCSSCHHHHHHHHHHHTTCTTCEEEESSSCEEEHHHHHHHTTCCCCCCCTTHHHH
T ss_pred CCHHHHHHHHHHHhCCCccccCCCCCcccchhHHHHHHHHHhCCCCeeeeccCCEEeeHHHHHHHcCCCCccCCcchHHH
Confidence 557999999877777665311 599999999955
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCCCChhHHHHHHHHHHHhcCCCCC---
Q 003117 123 LEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLV--- 199 (846)
Q Consensus 123 l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gS~~~--- 199 (846)
|.| | |++|+|++++++++|++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++
T Consensus 247 LiN-G-Ta~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~i-h~~RpHpGQ~~~A~~ir~lL~gS~l~~~~ 323 (705)
T 2yii_A 247 LVN-G-TSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLI-HKVKPHPGQIESAELLEWLLRSSPFQELS 323 (705)
T ss_dssp HHS-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHH-HHTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHc-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHhhHHH-HhcCCChhHHHHHHHHHHHhCcCcchhhh
Confidence 555 4 46999999999999999999999999999999999999999998 59999999999999999999999873
Q ss_pred -----------CCCCcccccchhhHhHHHHHHHHHHHHHHHHHHhcCcc----c---Cccccccch-----HHHHHHHHH
Q 003117 200 -----------GKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVK----V---GISGTAKAV-----GANALALAA 256 (846)
Q Consensus 200 -----------~~~D~yslRc~Pqv~Ga~~d~~~~~~~~~~~ElNs~~d----~---~~~~~~~~~-----~~~~d~l~~ 256 (846)
..||||||||+||||||++|+|+++++++++||||+|| | +++.+|||| ++++|+|++
T Consensus 324 ~~~~~~~~~~~rvQDpYSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvalamD~L~i 403 (705)
T 2yii_A 324 REYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRI 403 (705)
T ss_dssp HHHHHTTGGGSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEEGGGTEEECCCTTCCHHHHHHHHHHHH
T ss_pred hhccccccccCcCcCCceeechhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCCccchhHHHHHHHHHH
Confidence 23699999999999999999999999999999999999 2 347789999 455799999
Q ss_pred HHHHHHhHHHHHHHHhcCCCCCCCCCccccc--C-----------------CCCCCcccc---ccccccCCCcccccccc
Q 003117 257 AIHNLGESSLYRAKMNLNSINSDGLRSLFEK--D-----------------CSSGDNLRK---TYKLVLDANFEEDYVKF 314 (846)
Q Consensus 257 a~~~l~~~serR~~~l~~~~~~~gLp~fL~~--~-----------------~~~~~~~~~---~ds~~~s~~~qedhvsm 314 (846)
|++++|+|||||+++|+||.+|+|||+||++ + +++|+.|++ +||+|||++ |||||||
T Consensus 404 Ala~lg~lserR~~~Lvdp~~n~GLP~fL~~~~~~GlnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~-qED~vSm 482 (705)
T 2yii_A 404 AVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQH-NQDINSL 482 (705)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTTCCGGGCCCSSGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBTTT-TBSSCCC
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCcccccC-ccccccc
Confidence 9999999999999999999988899999975 3 233444555 899999999 9999999
Q ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHhhhccc
Q 003117 315 LHEANVL----LGMVWKIVTWEAVLAFVALEGGE 344 (846)
Q Consensus 315 ~~~~~~~----~~~~~~ilaiEl~~a~qa~~~~~ 344 (846)
|+.++++ ++|+++|+||||++||||+||+.
T Consensus 483 g~~aArk~~~~venl~~vlAiELl~a~QAidlR~ 516 (705)
T 2yii_A 483 ALISARKTEEALDILKLMIASHLTAMCQAVDLRQ 516 (705)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9986666 58899999999999999999983
No 9
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=9.6e-74 Score=667.82 Aligned_cols=419 Identities=58% Similarity=0.942 Sum_probs=373.1
Q ss_pred ccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCC
Q 003117 426 ESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 426 ~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpD 505 (846)
+.+++.|+|+||+||+|.++.++++|+++++++|++|||++|.||+||+.++|.+++|++.+.||+|.|++|+.++||||
T Consensus 62 ~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd 141 (517)
T 4g85_A 62 KQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYD 141 (517)
T ss_dssp CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSC
T ss_pred ccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCc
Confidence 34688999999999999999999999999999999999999999999999999888888888899999999999999999
Q ss_pred ChHHHHHHHHHcCCCCceEEEeeceeecCCC--CCCCccceEecccccc--------cHHHHHHHHHHHHHcCCCceEEE
Q 003117 506 LTVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIA--------DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 506 lT~~iaR~~a~~~~~plK~y~ig~VfR~e~p--~~Gr~REf~Q~g~ei~--------DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
+|+|+||++++|+..|+|+||+|+|||+|+| +.||+|||+|+|+|+| |+|+|.++.++|+.||++++.++
T Consensus 142 ~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~ 221 (517)
T 4g85_A 142 LTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVK 221 (517)
T ss_dssp SHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCccccc
Confidence 9999999999999999999999999999998 5699999999999998 89999999999999999999999
Q ss_pred EcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccc
Q 003117 576 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 655 (846)
Q Consensus 576 Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~ 655 (846)
|||+++++++++.|+++++.++.++..++++++..|++++.++....++++...+.+..+....|++ +.++.+... ..
T Consensus 222 in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~-~~ 299 (517)
T 4g85_A 222 VNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV-SLVEQLLQD-PK 299 (517)
T ss_dssp EEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSH-HHHHHHHHC-HH
T ss_pred ccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc-hHHHHHHhc-cc
Confidence 9999999999999999999999999999999999999999999888999999999999998888887 556655432 22
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC--------------------CCcccCCCccchhhh
Q 003117 656 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG--------------------VGSIAAGGRYDNLIG 715 (846)
Q Consensus 656 ~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG--------------------~g~ia~GGRYD~Li~ 715 (846)
+..+....+++++|+.++++++.+|+..+|.||++++||++|||| .++|++|||||+|++
T Consensus 300 ~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~ 379 (517)
T 4g85_A 300 LSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVG 379 (517)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHH
Confidence 334555678899999999999999999899999999999999999 037999999999999
Q ss_pred hh--CCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC--CCH
Q 003117 716 MF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--KKV 790 (846)
Q Consensus 716 ~f--g~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~~l 790 (846)
.| +++++|||||++|+|||+.+|.++.......|.+.+++|+|++.++ ...++++++++||++||+|++++. .++
T Consensus 380 ~f~~~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l 459 (517)
T 4g85_A 380 MFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKL 459 (517)
T ss_dssp TTSSSCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCH
T ss_pred HhccCCCCCCcccccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCH
Confidence 99 4678999999999999999998764432223445789999999987 788999999999999999999873 469
Q ss_pred HHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhhC
Q 003117 791 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846 (846)
Q Consensus 791 ~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 846 (846)
++++++|++.|+||+||||++|+++|+|+||++.+++|.+|+++||+++|++++.|
T Consensus 460 ~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 515 (517)
T 4g85_A 460 LNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515 (517)
T ss_dssp HHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998764
No 10
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.6e-73 Score=656.44 Aligned_cols=418 Identities=57% Similarity=0.940 Sum_probs=373.8
Q ss_pred cccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCC
Q 003117 427 SRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 427 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDl 506 (846)
.+++.+.|+||+||+|.++.++++|+++++++|++|||++|.||+||+.|+|.+++|++.++||+|.|++|+.++||||+
T Consensus 10 ~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~ 89 (464)
T 4g84_A 10 RQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDL 89 (464)
T ss_dssp ---CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCS
T ss_pred hccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcC
Confidence 45778999999999999999999999999999999999999999999999998888888889999999999999999999
Q ss_pred hHHHHHHHHHcCCCCceEEEeeceeecCCC--CCCCccceEecccccc--------cHHHHHHHHHHHHHcCCCceEEEE
Q 003117 507 TVPFARYVAMNGLTSFKRHQIAKVYRRDNP--SKGRYREFYQCDFDIA--------DFEVVKILTELLNELDIGDYEIKL 576 (846)
Q Consensus 507 T~~iaR~~a~~~~~plK~y~ig~VfR~e~p--~~Gr~REf~Q~g~ei~--------DaEvI~l~~eil~~lgl~~~~i~I 576 (846)
|+|+||++++++..|+|+||+|+|||+|+| +.||+|||+|+|+|+| |+|+|.++.++|+.||++++.++|
T Consensus 90 T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i 169 (464)
T 4g84_A 90 TVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKV 169 (464)
T ss_dssp HHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCCcceee
Confidence 999999999999999999999999999998 4679999999999998 899999999999999999999999
Q ss_pred cchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccc
Q 003117 577 NHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLF 656 (846)
Q Consensus 577 nh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~ 656 (846)
||+++++++++.|+++++.++.++..++++++..+++++.++....++++...+.+..+....|++ +.++.+... ..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~-~~~ 247 (464)
T 4g84_A 170 NDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV-SLVEQLLQD-PKL 247 (464)
T ss_dssp EEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESH-HHHHHHTTC-HHH
T ss_pred cchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc-hHHHHHHhc-ccc
Confidence 999999999999999999999999999999999999999999888999999999999998888886 556555432 123
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------C-----------CcccCCCccchhhhh
Q 003117 657 LENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V-----------GSIAAGGRYDNLIGM 716 (846)
Q Consensus 657 ~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~-----------g~ia~GGRYD~Li~~ 716 (846)
..+....+++++|+.++++++.+|+..+|.||++++||++|||| . ++|++|||||+|++.
T Consensus 248 ~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~ 327 (464)
T 4g84_A 248 SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGM 327 (464)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGGG
T ss_pred cccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHHH
Confidence 34555677899999999999999998899999999999999999 0 269999999999999
Q ss_pred hC--CCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC--CCHH
Q 003117 717 FG--TKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH--KKVM 791 (846)
Q Consensus 717 fg--~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~--~~l~ 791 (846)
|+ ++++|||||++|+|||+.+|.++.....+.|.+.+++|+|++.++ ...++++++++||++||+|++++. .+++
T Consensus 328 ~~~~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~ 407 (464)
T 4g84_A 328 FDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLL 407 (464)
T ss_dssp TSTTCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHH
T ss_pred hccCCCCCCCccccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHH
Confidence 94 578999999999999999998865443334556789999999987 788999999999999999999873 4699
Q ss_pred HHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhhC
Q 003117 792 KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 846 (846)
Q Consensus 792 ~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~~ 846 (846)
+++++|++.|++|+||||++|+++|+|+|||+.+++|.+|+++|++++|++++.|
T Consensus 408 ~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 462 (464)
T 4g84_A 408 NQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462 (464)
T ss_dssp HHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998865
No 11
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.6e-70 Score=631.62 Aligned_cols=408 Identities=30% Similarity=0.522 Sum_probs=353.3
Q ss_pred ccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCc-eEEEEcC-----------
Q 003117 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQ----------- 495 (846)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~-~y~~~D~----------- 495 (846)
...+++|+||+||+|.++..++++++.++++|++|||++|.||+||+.++|.++ |+..++ ||+|.|+
T Consensus 9 ~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~ 87 (465)
T 3net_A 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDK 87 (465)
T ss_dssp CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------
T ss_pred cccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEeccccccccccccc
Confidence 456899999999999999999999999999999999999999999999999887 755678 9999999
Q ss_pred ----CCCeEeeCCCChHHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc---------cHHHHHH
Q 003117 496 ----GGELCSLRYDLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA---------DFEVVKI 559 (846)
Q Consensus 496 ----~G~~l~LRpDlT~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~---------DaEvI~l 559 (846)
+|+.++||||+|+|+||+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.+
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l 167 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHH
Confidence 38999999999999999999863 4799999999999999999999999999999997 7899999
Q ss_pred HHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 003117 560 LTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKER 639 (846)
Q Consensus 560 ~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~ 639 (846)
+.++|+.||+++++|+|||+++++++++.||++++.+..++.+|+++++..|++++.++. ..++++...+.+..++.++
T Consensus 168 ~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~-~~~l~~~~~~~l~~l~~~~ 246 (465)
T 3net_A 168 ITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE-KEGINPEQTQKIIDFVKID 246 (465)
T ss_dssp HHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHH-hcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988899999999999999998877664 5899999999999999999
Q ss_pred CChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCce----EEEecCCCCCCccccC------------CCc
Q 003117 640 GSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDK----VVFDLSLARGLDYYTG------------VGS 703 (846)
Q Consensus 640 g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~----i~~Dlsl~rgl~YYtG------------~g~ 703 (846)
|++.+++++++........++...+++++|+.++ ++.+ +..+ ++|||+++||++|||| .++
T Consensus 247 g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~~~ 323 (465)
T 3net_A 247 GSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGS 323 (465)
T ss_dssp SCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGGCC
T ss_pred CChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCCcccCceEEEEEECCCCccce
Confidence 9977888887642100133455678899999997 5555 4346 9999999999999999 148
Q ss_pred ccCCCccchhhhhh-CCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCe
Q 003117 704 IAAGGRYDNLIGMF-GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVK 781 (846)
Q Consensus 704 ia~GGRYD~Li~~f-g~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ 781 (846)
||+|||||+|++.| |++ .|||||+||+|||+.+|.+++. .+.+..+|++|+|++.++ ...++++++++||++||+
T Consensus 324 i~~GGRYD~L~~~f~g~~-~pavGfaiGieRli~~L~e~g~--~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ 400 (465)
T 3net_A 324 ICSGGRYEELVGTFIGEK-MPGVGISIGLTRLISRLLKAGI--LNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLN 400 (465)
T ss_dssp SSEEEEESSSSGGGTCSC-CCEEEEEEEHHHHHHHHHHTTS--SCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCC
T ss_pred ecccccHHHHhhhhcCCC-CceeeeeccHHHHHHHHHHcCC--CCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCE
Confidence 99999999999966 765 9999999999999999988642 121123678999999886 678999999999999999
Q ss_pred EEEEcC-CCHHHHHHHHHhcCCCEEEEEcCcccccC-eEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 782 AEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEG-IVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 782 ael~~~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g-~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
|++++. .++++++++|++.|+||+||||++ +++| +|+||++.++++.+|++++++++|++.+
T Consensus 401 ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 401 VITNFEKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp EEECCSCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999984 679999999999999999999999 8889 9999999999999999999999998764
No 12
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=3.3e-70 Score=625.63 Aligned_cols=393 Identities=27% Similarity=0.433 Sum_probs=336.4
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcCCCCeEeeCCCCh
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDLT 507 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~~G~~l~LRpDlT 507 (846)
+.+++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..++|++ .++||+|.|++|+.++||||+|
T Consensus 27 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T 106 (456)
T 3lc0_A 27 VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMT 106 (456)
T ss_dssp CCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSH
T ss_pred ccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCH
Confidence 358999999999999999999999999999999999999999999999998777775 5789999999999999999999
Q ss_pred HHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCC--CceEEE
Q 003117 508 VPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDI--GDYEIK 575 (846)
Q Consensus 508 ~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl--~~~~i~ 575 (846)
+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||+ +++.|+
T Consensus 107 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~~~~i~ 186 (456)
T 3lc0_A 107 PSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIK 186 (456)
T ss_dssp HHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred HHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCCCceEEE
Confidence 99999999874 4599999999999999999999999999999998 89999999999999999 789999
Q ss_pred EcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhccc
Q 003117 576 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSL 655 (846)
Q Consensus 576 Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~ 655 (846)
|||+++++++++.||++++.+..++..++++++.+|+++++.|. .++++++.+++|..++.+. .. +++..
T Consensus 187 in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~-~~~l~~~~~~~l~~~~~~~-~~----~~l~~---- 256 (456)
T 3lc0_A 187 VNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLA-VLGLEPTVVDAITTTLSLK-SI----DEIAQ---- 256 (456)
T ss_dssp EEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHH-HTTCCHHHHHHHHHHHTCC-SH----HHHHH----
T ss_pred EcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHH-HcCCCHHHHHHHHHHhccC-CH----HHHHH----
Confidence 99999999999999999999999999999999999999876654 5799999999888877543 22 22321
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-----------CCcccCCCccchhhhhhCCC-Ccc
Q 003117 656 FLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTK-QVP 723 (846)
Q Consensus 656 ~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-----------~g~ia~GGRYD~Li~~fg~~-~~p 723 (846)
+... ..+++++|+.++++++.+|+..++.|||+++||++|||| .++||+|||||+|++.||++ +.|
T Consensus 257 ~l~~--~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~P 334 (456)
T 3lc0_A 257 RVGE--EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIP 334 (456)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCC
T ss_pred HHhH--HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCC
Confidence 1111 134699999999999999998889999999999999999 24899999999999999987 799
Q ss_pred ceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHhcC
Q 003117 724 AVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESK 801 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~~~A~~~g 801 (846)
|||||+|+|||+.+|.+.+.. .|.+.+++|+|++.++ ...++++++++||++|++|++++. .++++++++|++.|
T Consensus 335 avGFaig~eRl~~~l~~~~~~---~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~g 411 (456)
T 3lc0_A 335 CAGFGFGDCVIVELLQEKRLL---PDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVG 411 (456)
T ss_dssp EEEEEEESSHHHHHHHHTTCC---CCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTT
T ss_pred EEEEEeEHHHHHHHHHhcCCC---CccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcC
Confidence 999999999999999764321 1334568999999987 678999999999999999999984 57999999999999
Q ss_pred CCEEEEEcCcccccCeEEEEECCCCceeeechHHH
Q 003117 802 IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNF 836 (846)
Q Consensus 802 i~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~el 836 (846)
++|+||||++|+++|+|+|||+.+++|.+++.++.
T Consensus 412 a~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 412 AVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp EEEEEEECHHHHHTTEEEEEECC------------
T ss_pred CCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 99999999999999999999999999988887664
No 13
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3.1e-66 Score=592.46 Aligned_cols=399 Identities=26% Similarity=0.424 Sum_probs=356.9
Q ss_pred ccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-cCceEEEEcCCCCeEeeCCCC
Q 003117 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-SKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-~~~~y~~~D~~G~~l~LRpDl 506 (846)
++..++|+|++||+|.++.++++|++.++++|++|||++|.||+|||.++|..++|+. .++||+|.|++|+.++||||+
T Consensus 3 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred ccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCC
Confidence 4668999999999999999999999999999999999999999999999998767764 578999999999999999999
Q ss_pred hHHHHHHHHHcCC--CCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCc-eEEEE
Q 003117 507 TVPFARYVAMNGL--TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGD-YEIKL 576 (846)
Q Consensus 507 T~~iaR~~a~~~~--~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~-~~i~I 576 (846)
|+|++|++++++. +|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|++||+++ +.++|
T Consensus 83 t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~~~~~i~l 162 (434)
T 1wu7_A 83 TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRI 162 (434)
T ss_dssp HHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred hHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9999999998753 799999999999999999999999999999998 8999999999999999977 99999
Q ss_pred cchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccc
Q 003117 577 NHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLF 656 (846)
Q Consensus 577 nh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~ 656 (846)
||+++++++++.+| +++.+ .++++++++++..|+++...+ +..+++....+.+..|+...|+..+ +++++.
T Consensus 163 ~~~g~~~~~~~~~g-~~~~~-~l~~~l~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~----- 233 (434)
T 1wu7_A 163 NSRKIMEEIIGGMT-SSDPF-SVFSIIDRYHKISREEFVDQL-RSAGIGEDGVSMIADLCSGTRGIDE-MARITG----- 233 (434)
T ss_dssp EEHHHHHHHHHTTC-SSCHH-HHHHHHHTTTTSCHHHHHHHH-HHTTCCHHHHHHHHHHHHSCBCHHH-HHHHTT-----
T ss_pred CChhhHHHHHHHhC-cHhHH-HHHHHHHHHhccchHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCHHH-HHHHHh-----
Confidence 99999999998777 66666 889999999888888875554 5678888888888888766666544 555431
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-----------CCcccCCCccchhhhhhCCCCccce
Q 003117 657 LENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-----------VGSIAAGGRYDNLIGMFGTKQVPAV 725 (846)
Q Consensus 657 ~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-----------~g~ia~GGRYD~Li~~fg~~~~pAV 725 (846)
....++++++++.++++.+|+. +|+||++++|+++|||| .++|++|||||+|+..|++++.|++
T Consensus 234 ----~~~~~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~ 308 (434)
T 1wu7_A 234 ----KSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAV 308 (434)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEE
T ss_pred ----hHHHHHHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeE
Confidence 1235788999999999999986 79999999999999999 1379999999999999987789999
Q ss_pred eecchHHHHHHHHHHhhhhhhhcc-ccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCC
Q 003117 726 GVSLGIERVFTIMEQIQKERNQII-RATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKI 802 (846)
Q Consensus 726 GfsigleRL~~~L~~~~~~~~~~~-~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi 802 (846)
||+||+|||+.++.+++ .| +.+|++|+|++.++ ...++.+++++||++|++|++++ +.++++++++|++.|+
T Consensus 309 Gf~igveRl~~~l~e~~-----~~~p~~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~ 383 (434)
T 1wu7_A 309 GFGMGDAVISLLLKREN-----VQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGA 383 (434)
T ss_dssp EEEEEHHHHHHHHHHTT-----CCCCCSSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTC
T ss_pred EEEEcHHHHHHHHHhcC-----CccCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCC
Confidence 99999999999998764 36 55689999999876 78899999999999999999987 4689999999999999
Q ss_pred CEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 803 PWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 803 ~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
||+|+||++|+++|+|+||++.++++.+|++++++++++++|+
T Consensus 384 ~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 384 DFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp SEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred CEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988764
No 14
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=9.1e-63 Score=555.30 Aligned_cols=367 Identities=21% Similarity=0.282 Sum_probs=317.3
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChH
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~ 508 (846)
+..++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..+.+...++||+|.|++|+.++||||+|+
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~ 87 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTA 87 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHH
T ss_pred hcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHH
Confidence 45899999999999999999999999999999999999999999999999764333468899999999999999999999
Q ss_pred HHHHHHHHc---CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcc
Q 003117 509 PFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNH 578 (846)
Q Consensus 509 ~iaR~~a~~---~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh 578 (846)
|++|+++++ ...|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++++.||+++++|+|||
T Consensus 88 ~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~ 167 (400)
T 3od1_A 88 PIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSEFKVAIGH 167 (400)
T ss_dssp HHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCCceEEEecC
Confidence 999999985 46799999999999999999999999999999998 89999999999999999999999999
Q ss_pred hhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccc
Q 003117 579 RLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLE 658 (846)
Q Consensus 579 ~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~ 658 (846)
+++++++++.||++++.+..++..|+++|+..+++ +++..+++++..++|..++.+.|++ ++++++.. +..
T Consensus 168 ~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~----~l~~~~l~~~~~~~l~~l~~~~g~~-~~l~~~~~----l~~ 238 (400)
T 3od1_A 168 VGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYRE----HVKSLNLSTIDKSRLMNLLSLRGGR-AAIEEARG----LIQ 238 (400)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHH----HHHHSSSCHHHHHHHHHGGGCEESH-HHHHHHHT----TCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHH----HHHhcCCCHHHHHHHHHHHhccCCH-HHHHHHHh----hhc
Confidence 99999999999999999999999999998876654 4455789999999999999888887 68887763 334
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------C-CcccCCCccchhhhhhCCCCccceeec
Q 003117 659 NSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V-GSIAAGGRYDNLIGMFGTKQVPAVGVS 728 (846)
Q Consensus 659 ~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~-g~ia~GGRYD~Li~~fg~~~~pAVGfs 728 (846)
+....+++++|+.++++|+.+|+..++.|||+++||++|||| . .+||+|||||+|++.||+ +.|||||+
T Consensus 239 ~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~-~~pavGfa 317 (400)
T 3od1_A 239 TEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHR-PAQATGFG 317 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTC-CCCEEEEE
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCC-CCCEEEEE
Confidence 556788999999999999999998889999999999999999 2 389999999999999987 59999999
Q ss_pred chHHHHHHHHHHhhhhhhhccccCcceEEEEEcCCcHHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHhcCCCEEEEE
Q 003117 729 LGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIV 808 (846)
Q Consensus 729 igleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~~~~~a~~la~~Lr~~GI~ael~~~~~l~~~~~~A~~~gi~~iviI 808 (846)
+++|||+.++.+.+. +++ ..+|+|+...+...++++++++||++|++|+++.....+.. ||...|+.+++.+
T Consensus 318 iglerL~~~l~~~~~-----~~~-~~~v~v~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~~~~--~~~~~~~~~~~~~ 389 (400)
T 3od1_A 318 VRIDLLVEALNGEII-----SNG-HEQTCILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDV--DAMSSNYQDVIYC 389 (400)
T ss_dssp EEHHHHHHHHCC------------CCCEEEEECGGGHHHHHHHHHHHHTTTCCEEEEEGGGCSCH--HHHHTTSSEEEEE
T ss_pred eeHHHHHHHHHhcCC-----CCC-CCeEEEEECcHHHHHHHHHHHHHHHCCCEEEEEecCChhHH--HHHHcCCCEEEEE
Confidence 999999998865432 111 23477663333688999999999999999999874332222 9999999999999
Q ss_pred cCccc
Q 003117 809 GEREL 813 (846)
Q Consensus 809 g~~e~ 813 (846)
.+.+-
T Consensus 390 ~~~~~ 394 (400)
T 3od1_A 390 IGTAG 394 (400)
T ss_dssp CSCC-
T ss_pred ecCCC
Confidence 87653
No 15
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=3.2e-61 Score=554.01 Aligned_cols=381 Identities=23% Similarity=0.344 Sum_probs=310.4
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCC-CCeEeeCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQG-GELCSLRY 504 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~-G~~l~LRp 504 (846)
.+++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..++|+. .++||+|.|++ |+.++|||
T Consensus 31 ~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRP 110 (467)
T 4e51_A 31 KLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRP 110 (467)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECS
T ss_pred CCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCc
Confidence 58999999999999999999999999999999999999999999999998766872 37899999999 99999999
Q ss_pred CChHHHHHHHHHcC---CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEE
Q 003117 505 DLTVPFARYVAMNG---LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEI 574 (846)
Q Consensus 505 DlT~~iaR~~a~~~---~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i 574 (846)
|+|+|++|+++++. .+|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||++++.|
T Consensus 111 d~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~~~i 190 (467)
T 4e51_A 111 ENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKL 190 (467)
T ss_dssp CSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred ccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCCceEE
Confidence 99999999999753 4699999999999999999999999999999998 8999999999999999999999
Q ss_pred EEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHH------
Q 003117 575 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSK------ 648 (846)
Q Consensus 575 ~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~------ 648 (846)
+|||+++.+.. +..+..+...+.+. ..+++.+..++|.. +|.+++++
T Consensus 191 ~in~~g~~~~~-------~~~~~~l~~~l~~~--------------~~~l~~~~~~~l~~------~~l~~ld~k~~~~~ 243 (467)
T 4e51_A 191 EINSLGLAEER-------AAHRVELIKYLEQH--------------ADKLDDDAQRRLYT------NPLRVLDTKNPALQ 243 (467)
T ss_dssp EEEECCCHHHH-------HHHHHHHHHHHHTT--------------GGGCCHHHHHHHTT------CTHHHHTCCCGGGH
T ss_pred EEeCCCchhhh-------HHHHHHHHHHHHHH--------------HhccCHHHHHHHHh------chHHHhhccchhHH
Confidence 99998754431 11122222222211 12345554444432 22222221
Q ss_pred -HHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccchhhh
Q 003117 649 -LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIG 715 (846)
Q Consensus 649 -l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~Li~ 715 (846)
+......+.. ....+++++++.+.++|+.+|+ .+.|||+++||++|||| .++|++|||||+|++
T Consensus 244 ~~l~~a~~l~~-~l~~~~~~~l~~l~~~L~~~gi--~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~ 320 (467)
T 4e51_A 244 EIVRNAPKLID-FLGDVSRAHFEGLQRLLKANNV--PFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIE 320 (467)
T ss_dssp HHHHTSCCGGG-GCCHHHHHHHHHHHHHHHHTTC--CEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHH
T ss_pred HHHhhhHHHHH-hhhHHHHHHHHHHHHHHHHcCC--eEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHH
Confidence 1111111111 1124577889999999999998 49999999999999999 148999999999999
Q ss_pred hhCCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-----CC
Q 003117 716 MFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-----KK 789 (846)
Q Consensus 716 ~fg~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-----~~ 789 (846)
.||+++.|||||++++|||+.+|.+++. .+..+|++|+|++.++ ...++.+++++||++|++|++++. .+
T Consensus 321 ~~g~~~~PavGfa~gleRl~~~l~~~~~----~~~~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~s 396 (467)
T 4e51_A 321 QLGGKPTAACGWAMGIERILELLKEEHL----VPEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGAS 396 (467)
T ss_dssp HTTSSCCCEEEEEEEHHHHHHHHHHTTC----CCCCCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCC
T ss_pred HhCCCCCCceeehHHHHHHHHHHHhcCC----cccCCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCC
Confidence 9998889999999999999999987532 1223678999999986 678899999999999999999986 57
Q ss_pred HHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCC-C------ceeeechHHHHHHHHHHh
Q 003117 790 VMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT-T------QEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 790 l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~-~------~e~~v~~~elv~~L~~~l 844 (846)
+++++++|++.|+||+||||++|+++++|+||++.+ + ++..|++++++++|++++
T Consensus 397 l~kq~~~A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 397 FKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 8 899999999999998876
No 16
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.4e-59 Score=535.58 Aligned_cols=384 Identities=25% Similarity=0.375 Sum_probs=308.5
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpD 505 (846)
..++|+|++||+|.++.+++++++.++++|++|||++|.||+|||.++|..++|++ .++||+|.|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 36899999999999999999999999999999999999999999999998766763 47899999999999999999
Q ss_pred ChHHHHHHHHHc----CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEE
Q 003117 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEI 574 (846)
Q Consensus 506 lT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i 574 (846)
+|+|++|+++++ +.+|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|++.++.++|++||++++.+
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~i 161 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKV 161 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCCceEE
Confidence 999999999865 36799999999999999999999999999999998 8899999999999999988999
Q ss_pred EEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHH----HHHhcCCh-HHHHHHH
Q 003117 575 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGT----FVKERGSP-LVLLSKL 649 (846)
Q Consensus 575 ~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~----l~~~~g~~-~~~l~~l 649 (846)
+|||.+..+.... .+..+...+... . ..+++...+.+.. ++...+.. .+++..+
T Consensus 162 ~i~~~g~~~~~~~-------~~~~l~~~l~~~------------~--~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 220 (421)
T 1h4v_B 162 KLSSVGDPEDRAR-------YNAYLREVLSPH------------R--EALSEDSKERLEENPMRILDSKSERDQALLKEL 220 (421)
T ss_pred EEcCCCchhhHHH-------HHHHHHHHHHHH------------H--hhcCHHHHHHHHhcchHhhhcccHHHHHHHHhc
Confidence 9999864322110 011111111110 0 0112222222211 11111110 1112100
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccchhhhhh
Q 003117 650 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMF 717 (846)
Q Consensus 650 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~Li~~f 717 (846)
. +..+. +.....++++++.+.++++.+|+ +|+||++++|+++|||| .++|++|||||+|++.|
T Consensus 221 ~--~~~l~-~~l~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~f 295 (421)
T 1h4v_B 221 G--VRPML-DFLGEEARAHLKEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELL 295 (421)
T ss_pred C--hHHHH-HHhhHHHHHHHHHHHHHHHHcCC--eEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHh
Confidence 0 00110 00123567889999999999986 79999999999999999 13899999999999999
Q ss_pred CCCCccceeecchHHHHHHHHHHhhhhhhhccc-cCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHH
Q 003117 718 GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR-ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLI 794 (846)
Q Consensus 718 g~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~-~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~ 794 (846)
++++.|++||+||+|||+.++.+++. .|+ .+|++|+|++.++ ....+.+++++||++ ++|++++ +.++++++
T Consensus 296 gg~~~pa~Gf~igieRl~~~l~e~~~----~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~ 370 (421)
T 1h4v_B 296 GGPRVPGVGFAFGVERVALALEAEGF----GLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGL 370 (421)
T ss_pred CCCCCCeEEEeecHHHHHHHHHhcCc----CCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHHH
Confidence 88889999999999999999987542 233 4789999999986 678899999999999 9999998 46899999
Q ss_pred HHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 795 DRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 795 ~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++|++.|+||+|+||++|+++++|+||++.++++.+|+++|++++|++.+
T Consensus 371 ~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 371 EEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred HHHHhCCCCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998764
No 17
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=5.1e-60 Score=539.40 Aligned_cols=384 Identities=21% Similarity=0.328 Sum_probs=303.6
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC----cCceEEEEcCCCCeEeeCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED----SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~----~~~~y~~~D~~G~~l~LRpD 505 (846)
..++|+|++||+|.++.+++++++.++++|++|||+||.||+|||.|+|..++|++ .++||+|.|++|+.++||||
T Consensus 3 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 82 (423)
T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPE 82 (423)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSC
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCC
Confidence 37899999999999999999999999999999999999999999999998766773 37899999999999999999
Q ss_pred ChHHHHHHHHHc---CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCC-CceEE
Q 003117 506 LTVPFARYVAMN---GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDI-GDYEI 574 (846)
Q Consensus 506 lT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl-~~~~i 574 (846)
+|+|++|+++++ +.+|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|++||+ +++.+
T Consensus 83 ~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~~i 162 (423)
T 1htt_A 83 GTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTL 162 (423)
T ss_dssp SHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGGGCEE
T ss_pred chHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCCCcEE
Confidence 999999999865 36799999999999999999999999999999998 88999999999999999 88999
Q ss_pred EEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHH----HHHHhcCC-hHHHHHHH
Q 003117 575 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIG----TFVKERGS-PLVLLSKL 649 (846)
Q Consensus 575 ~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~----~l~~~~g~-~~~~l~~l 649 (846)
+|||.+..+....+ +..+...+..... .+++...+.+. +++...+. ..+++...
T Consensus 163 ~i~~~g~~~~~~~~-------~~~l~~~l~~~~~--------------~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~ 221 (423)
T 1htt_A 163 ELNSIGSLEARANY-------RDALVAFLEQHKE--------------KLDEDCKRRMYTNPLRVLDSKNPEVQALLNDA 221 (423)
T ss_dssp EEEECCCHHHHHHC------------------------------------------------------------------
T ss_pred EEcCCCChhhHHHH-------HHHHHHHHHHHHh--------------ccCHHHHHHHHhchhHhhhcccHHHHHHHhcc
Confidence 99998744332110 0011111110000 01111111111 00111110 00111111
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC------------CCcccCCCccchhhhhh
Q 003117 650 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG------------VGSIAAGGRYDNLIGMF 717 (846)
Q Consensus 650 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG------------~g~ia~GGRYD~Li~~f 717 (846)
..+. .....+++++++.+.++++.+|+ +|+||++++|+++|||| .++|++|||||+|++.|
T Consensus 222 ----~~l~-~~l~~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~f 294 (423)
T 1htt_A 222 ----PALG-DYLDEESREHFAGLCKLLESAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQL 294 (423)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTTC--CCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHT
T ss_pred ----hHHH-hhhhHHHHHHHHHHHHHHHHcCC--eEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHh
Confidence 0111 00114578899999999999986 69999999999999999 13899999999999999
Q ss_pred CCCCccceeecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHC--CCeEEEEc-CCCHHHH
Q 003117 718 GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNA--KVKAEYMV-HKKVMKL 793 (846)
Q Consensus 718 g~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~--GI~ael~~-~~~l~~~ 793 (846)
++++.|+|||+||+|||+.++.+++. .+.| .+|++|+|++.++ ....+.+++++||++ |++|++++ +.+++++
T Consensus 295 gg~~~pavGf~igveRl~~~l~e~~~--~~~~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~ 371 (423)
T 1htt_A 295 GGRATPAVGFAMGLERLVLLVQAVNP--EFKA-DPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQ 371 (423)
T ss_dssp TSCCCCEEEEEEEHHHHHHHHHHHST--TCCC-CCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHH
T ss_pred CCCCCCeEEEEecHHHHHHHHHhcCc--CCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHH
Confidence 88889999999999999999987642 1122 3788999999886 678899999999999 99999998 4689999
Q ss_pred HHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 794 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 794 ~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
+++|++.|+||+|+||++|+++|+|+||++.++++.+|+++|+++++++.+
T Consensus 372 ~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 372 FARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp HHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 18
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.5e-56 Score=500.30 Aligned_cols=318 Identities=26% Similarity=0.375 Sum_probs=266.4
Q ss_pred CCCcchHHHHHHHHHHhhccccccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC
Q 003117 406 PRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED 485 (846)
Q Consensus 406 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~ 485 (846)
..||+.+++-+.+| ...++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..+....
T Consensus 7 ~~~~~~~~~~~~~~---------~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~ 77 (373)
T 3rac_A 7 TRSAWGARAWEAVR---------GFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPE 77 (373)
T ss_dssp -----------CCC---------CCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTT
T ss_pred CcCHHHHHHHHHHH---------hcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCcc
Confidence 45666666655554 346999999999999999999999999999999999999999999999997643233
Q ss_pred c-CceEEEEcCCCCeEeeCCCChHHHHHHHHHc---CCCCceEEEeeceeecCCC------CCCCccceEecccccc---
Q 003117 486 S-KLIYDLADQGGELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP------SKGRYREFYQCDFDIA--- 552 (846)
Q Consensus 486 ~-~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p------~~Gr~REf~Q~g~ei~--- 552 (846)
. ++||+|.|++|+.++||||+|+|++|+++++ ...|+|+||+|+|||+|+| +.||+|||+|+|+|+|
T Consensus 78 ~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 78 SSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEE 157 (373)
T ss_dssp SCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSC
T ss_pred chhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCC
Confidence 5 7899999999999999999999999999975 4689999999999999999 8999999999999998
Q ss_pred -----cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHH
Q 003117 553 -----DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVE 627 (846)
Q Consensus 553 -----DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~ 627 (846)
|+|+|.++.++|+.||+++++|+|||+++++++++.||++++.+..++..|+++|+..|+++..++ +++
T Consensus 158 d~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l------~~~ 231 (373)
T 3rac_A 158 ASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLH------AAK 231 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCSCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHH------CSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhc------CHH
Confidence 699999999999999999999999999999999999999999999999999999998888776554 334
Q ss_pred HHHHHHHHHHhcCC-----------hHHHHHHHHhhcccccccchH----HHHHHHHHHHHHHHHhcCC-CceEEEecCC
Q 003117 628 TADRIGTFVKERGS-----------PLVLLSKLRQEGSLFLENSSA----KLALDDLEILFQALEKSKC-IDKVVFDLSL 691 (846)
Q Consensus 628 ~~~~L~~l~~~~g~-----------~~~~l~~l~~~~~~~~~~~~~----~~al~~L~~l~~~l~~~g~-~~~i~~Dlsl 691 (846)
..+.|.+++.+.|. ..++++++.. +..+... .+++++|+.++++|+.+|+ ..++.|||++
T Consensus 232 ~~~~l~~l~~l~g~~~~~~~~~~~~~~~~l~~~~~----l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~l 307 (373)
T 3rac_A 232 DVDLLANLLTWSPAERDAAKRSREASDRELEALLR----DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLAL 307 (373)
T ss_dssp CSCHHHHHHHBCCCSSCTTSBCHHHHHHHHHHHHT----TCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTC
T ss_pred HHHHHHHHHHHhCCccccccccccccHHHHHHHHh----hhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCc
Confidence 45677788888881 3367777763 3334444 7899999999999999999 7789999999
Q ss_pred CCCCccccC---------C-CcccCCCccchhhhhhCCCCccceeecchHHHHHHHHHHhhh
Q 003117 692 ARGLDYYTG---------V-GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK 743 (846)
Q Consensus 692 ~rgl~YYtG---------~-g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL~~~L~~~~~ 743 (846)
+||++|||| . .+|++|||||+|++.||+ ++|||||++++|||+.+|.+++.
T Consensus 308 vRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~-~~pAvGFaiglerL~~~l~~~~~ 368 (373)
T 3rac_A 308 HRELDYYTGLVFEMFAPGVGAPIAQGGRYDELLAQFGA-GAPAVGFAFEVERVMAVLEAQEE 368 (373)
T ss_dssp CCSCTTCCSEEEEEECTTCSSCSEEEEECTTTTGGGTC-CCCCEEEEEEHHHHHHHHHHHHC
T ss_pred cCCCCccCCeEEEEEECCCCCeEeecccccHHHHhhCC-CCCeEEEEEEHHHHHHHHHhccC
Confidence 999999999 2 389999999999999986 59999999999999999987654
No 19
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=2.8e-55 Score=499.89 Aligned_cols=378 Identities=21% Similarity=0.326 Sum_probs=291.6
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCC-C---cCceEEEEcCCCCeEeeCCCC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-D---SKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~-~---~~~~y~~~D~~G~~l~LRpDl 506 (846)
.++|+|++||+|.++.+++++++.++++|++|||++|.||+|++.++|..+.|. . .++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 588999999999999999999999999999999999999999999999775443 2 478999999999999999999
Q ss_pred hHHHHHHHHHc-----CCCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEE
Q 003117 507 TVPFARYVAMN-----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEI 574 (846)
Q Consensus 507 T~~iaR~~a~~-----~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i 574 (846)
|++++|+++.+ +.+|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||++++.+
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~~~~i 161 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKL 161 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCCceEE
Confidence 99999999863 46799999999999999999999999999999998 7999999999999999988999
Q ss_pred EEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHH----HHHhc--CChHHHHHH
Q 003117 575 KLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGT----FVKER--GSPLVLLSK 648 (846)
Q Consensus 575 ~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~----l~~~~--g~~~~~l~~ 648 (846)
++||.+...... ..+..+...+.... ..++....+.+.. ++... +.. ++++.
T Consensus 162 ~l~~~g~~~~~~-------~~~~~l~~~~~~~~--------------~~l~~~~~~~l~~~~~~~l~~~~~~~~-~~~~~ 219 (420)
T 1qe0_A 162 VINSVGDMASRK-------EYNEALVKHFEPVI--------------HEFCSDCQSRLHTDPMRILDCKVDRDK-EAIKT 219 (420)
T ss_dssp EEEECCCHHHHH-------HHHHHHHHHHGGGG--------------GGSCHHHHHTTTTCGGGGC-------------C
T ss_pred EEcccCchhhHH-------HHHHHHHHHHHHHH--------------hhhCHHHHHHHHhcchhhhcccchhHH-HHHhh
Confidence 999976432210 00111111111100 0122222222211 00000 110 11211
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC---------C---C---cccCCCccchh
Q 003117 649 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG---------V---G---SIAAGGRYDNL 713 (846)
Q Consensus 649 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG---------~---g---~ia~GGRYD~L 713 (846)
. ..+.. .....++++++.+.++++.+|+ .+.+|++++|+++|||| . + +|++|||||+|
T Consensus 220 a----~~l~~-~l~~~~~~~l~~l~~~l~~~gi--~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l 292 (420)
T 1qe0_A 220 A----PRITD-FLNEESKAYYEQVKAYLDDLGI--PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGL 292 (420)
T ss_dssp C----CCGGG-CCCTTHHHHHHHHHHHHHHHTC--CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESH
T ss_pred c----hHHHH-HhhHHHHHHHHHHHHHHHHcCC--eEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHH
Confidence 1 11110 0013466788888899999987 68999999999999999 2 3 78999999999
Q ss_pred hhhhCCCCccceeecchHHHHHHHHHHhhhhhhhccc-cCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCH
Q 003117 714 IGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR-ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKV 790 (846)
Q Consensus 714 i~~fg~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~-~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l 790 (846)
++.||+++.|+|||++|+|||+.+++..+ ..|+ .+|++|+|++.++ ...++.+++++||++|++|++++. .++
T Consensus 293 ~~~~g~~~~P~vg~~igveRl~~~le~~~----~~~p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~ 368 (420)
T 1qe0_A 293 LELLDGPSETGIGFALSIERLLLALEEEG----IELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKI 368 (420)
T ss_dssp HHHTTCCCCEEEEEEEEHHHHHHHHHHTT----CCCCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCH
T ss_pred HHHhCCCCCCEEEEEecHHHHHHHHHhcC----CCCCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCH
Confidence 99998888999999999999999984322 2465 5789999999875 678899999999999999999984 689
Q ss_pred HHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHH
Q 003117 791 MKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 841 (846)
Q Consensus 791 ~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~ 841 (846)
++++++|++.|+||+|+||++|+++++|+||++.++++..|++++++++|+
T Consensus 369 ~~~~~~a~~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 369 KGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999875
No 20
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=2.6e-54 Score=477.90 Aligned_cols=297 Identities=19% Similarity=0.339 Sum_probs=258.1
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCcccccccccc---ccCC-CcCceEEEEcCCCCeEeeCC
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMG---KYGE-DSKLIYDLADQGGELCSLRY 504 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~---~~g~-~~~~~y~~~D~~G~~l~LRp 504 (846)
...++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|.. +.++ ..++||+|.|++|+.++|||
T Consensus 20 ~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRp 99 (344)
T 1z7m_A 20 INYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRY 99 (344)
T ss_dssp --CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECC
T ss_pred ccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCC
Confidence 3579999999999999999999999999999999999999999999999965 2232 25789999999999999999
Q ss_pred CChHHHHHHHHHcC-CCCceEEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEE
Q 003117 505 DLTVPFARYVAMNG-LTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKL 576 (846)
Q Consensus 505 DlT~~iaR~~a~~~-~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~I 576 (846)
|+|+|++|+++++. ..|+|+||+|+|||+|+|+.||+|||+|+|+|+| |+|+|.++.++|+.||+++++++|
T Consensus 100 d~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~~~~i~l 179 (344)
T 1z7m_A 100 DFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEI 179 (344)
T ss_dssp CSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 99999999999874 4799999999999999999999999999999998 899999999999999998999999
Q ss_pred cchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccc
Q 003117 577 NHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLF 656 (846)
Q Consensus 577 nh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~ 656 (846)
||++++++++ |++++.+..++.+|+++++..+++ +++..+++++..+.|..++.+ |++ ++++++.. +
T Consensus 180 ~~~gi~~~~l---g~~~~~~~~l~~~l~~~~~~~~~~----~l~~~~l~~~~~~~l~~l~~~-g~~-~~l~~~~~----l 246 (344)
T 1z7m_A 180 GSAKFFQRLC---QLADGSTELLTELLLKKDLSGLNA----FIEKNNFSKELRGLLKEIFIT-NEL-SRLENLVT----N 246 (344)
T ss_dssp EEHHHHHHHH---HHTTTCHHHHHHHHHTTCHHHHHH----HHTTSCCCHHHHHHHHHHTTC-CCH-HHHHHHHH----H
T ss_pred CCHHHHHHHh---CCCHHHHHHHHHHHHhhCHHHHHH----HHHhcCCCHHHHHHHHHHHhc-CCH-HHHHHHHH----h
Confidence 9999999998 677778889999999998876644 445578999999999999988 886 78887764 3
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------C---CcccCCCccchhhhhhCCCCcccee
Q 003117 657 LENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------V---GSIAAGGRYDNLIGMFGTKQVPAVG 726 (846)
Q Consensus 657 ~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~---g~ia~GGRYD~Li~~fg~~~~pAVG 726 (846)
..+....+++++|+.++++|+.+| ++.|||+++||++|||| . .+||+|||||+|++.|| +++||||
T Consensus 247 ~~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~pavG 322 (344)
T 1z7m_A 247 TKDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGRYDQLLSNFQ-EEAFAIG 322 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSEEEEEEETTEEEEEEEEEECHHHHHTSS-SCCCCEE
T ss_pred hcchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCeEEEEEECCCCCeEeeCccHHHHHHHhC-CCCCeEE
Confidence 333456789999999999999988 79999999999999999 1 28999999999999999 6899999
Q ss_pred ecchHHHHHHHHHHhh
Q 003117 727 VSLGIERVFTIMEQIQ 742 (846)
Q Consensus 727 fsigleRL~~~L~~~~ 742 (846)
||+++|||+.++.+++
T Consensus 323 faiglerl~~~l~~~~ 338 (344)
T 1z7m_A 323 FCCHMDTILKALERQE 338 (344)
T ss_dssp EEEEHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHhcc
Confidence 9999999999987653
No 21
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1e-42 Score=411.06 Aligned_cols=402 Identities=15% Similarity=0.146 Sum_probs=287.5
Q ss_pred ccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCC
Q 003117 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRY 504 (846)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRp 504 (846)
+++.+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|++ .++||+|.|++|+.++|||
T Consensus 30 g~~~~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~~m~~~~d~~~~~~~LrP 108 (572)
T 2j3l_A 30 GYIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKE-SGRYETYGPNLYRLKDRNDRDYILGP 108 (572)
T ss_dssp TSEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHH-HSHHHHSCTTSCEEECTTCCEEEECS
T ss_pred CCccccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCccccchheEEEecCCCCeEEEcc
Confidence 34556789999999999999999999999999999999999999999998864 5753 5789999999999999999
Q ss_pred CChHHHHHHHHHc----CCCCceEEEeeceeecCCC-CCC--CccceEecccccc-------cHHH---HHHHHHHHHHc
Q 003117 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFYQCDFDIA-------DFEV---VKILTELLNEL 567 (846)
Q Consensus 505 DlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p-~~G--r~REf~Q~g~ei~-------DaEv---I~l~~eil~~l 567 (846)
+.|++++|+++.+ +.+|+|+||+|+|||+|++ +.| |.|||+|+|+|+| |+|+ +.++.++|+.|
T Consensus 109 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~l 188 (572)
T 2j3l_A 109 THEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERC 188 (572)
T ss_dssp CCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999988864 3689999999999999987 577 9999999999998 5675 45789999999
Q ss_pred CCCceEEEEcchhhHHHHHH------------------hcCCChHHHHHHHHHhhh-------------h---ChhhHHH
Q 003117 568 DIGDYEIKLNHRLLLDGMLE------------------ICGVPSEKFRTICSSIDK-------------L---DKQSFEQ 613 (846)
Q Consensus 568 gl~~~~i~Inh~~ll~~il~------------------~~gi~~~~~~~v~~~l~k-------------l---~k~~~~~ 613 (846)
|++ |.+.+||++.+.+.++ .|+..... .+...+.. . +..+.+
T Consensus 189 gl~-~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~- 264 (572)
T 2j3l_A 189 GLE-FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANL--EMATSLYTPKKSHETQLDLEKIATPEVGTIA- 264 (572)
T ss_dssp TCC-EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEET--TTCCCCCCCCCCCCCCCCCEEEECTTCCSHH-
T ss_pred CCc-EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccch--hhhhcccccccccccccccceecCCCCCcHH-
Confidence 996 9999999998877642 23321110 00000000 0 000111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH----------HhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHH----HHHhc
Q 003117 614 IKKEMVEEKGLSVETADRIGTFV----------KERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQ----ALEKS 679 (846)
Q Consensus 614 i~~eL~~~~gl~~~~~~~L~~l~----------~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~----~l~~~ 679 (846)
++...+++++..+. +.++ ..+|+..--..++.+. +..+.......++++.+.. ++..+
T Consensus 265 ---~l~~~lg~~~~~i~--K~l~~~~~~~~~~vli~gd~el~~~kl~~~---l~~~~l~~a~~~el~~~~g~~~g~~~p~ 336 (572)
T 2j3l_A 265 ---EVANFFEVEPQRII--KSVLFIADEEPVMVLVRGDHDVNDVKLKNF---LGADFLDEATEEDARRVLGAGFGSIGPV 336 (572)
T ss_dssp ---HHHHHHTCCGGGBE--EEEEEEETTEEEEEEEETTCCBCHHHHHHH---HTCSCEEECCHHHHHHHHSSCTTSCCST
T ss_pred ---HHHHHhCcCHHHeE--EEEEEEeCCcEEEEEeeCccccCHHHHHHh---hCCCccccCCHHHHHHhhCCCccccCCc
Confidence 22223344332100 0000 0122210001111110 0000000012234555443 34444
Q ss_pred CC--CceEEEecCCCC--------------------CCccccC---------CC---cccCCCccc-----------hh-
Q 003117 680 KC--IDKVVFDLSLAR--------------------GLDYYTG---------VG---SIAAGGRYD-----------NL- 713 (846)
Q Consensus 680 g~--~~~i~~Dlsl~r--------------------gl~YYtG---------~g---~ia~GGRYD-----------~L- 713 (846)
|+ ..++.+|++++| |.+||++ .| ++| ||||| +|
T Consensus 337 gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~-gg~~~~~~~ievg~~f~Lg 415 (572)
T 2j3l_A 337 NVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG-NGVLAFTKGIEIGHIFKLG 415 (572)
T ss_dssp TCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTS-SSBEEEEEEEEEEEEEEEE
T ss_pred cCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCccccc-CCcceeccceEEEEEeccC
Confidence 44 347899999999 5566655 11 334 47776 22
Q ss_pred ---hhhh-------CC-CCccce-eecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEcC---C-cHHHHHHHHHH
Q 003117 714 ---IGMF-------GT-KQVPAV-GVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLG---D-KLPLAAELVSE 774 (846)
Q Consensus 714 ---i~~f-------g~-~~~pAV-GfsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~ 774 (846)
.+.| ++ +..|++ ||+||+||++.+|.++..++ +..|++ +|+||+|++++ + ....+.+++++
T Consensus 416 ~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~ 495 (572)
T 2j3l_A 416 TRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAM 495 (572)
T ss_dssp THHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHH
T ss_pred cccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 1233 34 357888 69999999999988764322 223554 78999999998 4 56889999999
Q ss_pred HHHCCCeEEEEcC-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 775 LWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 775 Lr~~GI~ael~~~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
||++||+|++++. .++++++++|++.|+||+|+||++| ++++|+||++.++++..|++++++++++ .+.
T Consensus 496 Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 496 MTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp HHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHC
T ss_pred HHhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHh
Confidence 9999999999984 6899999999999999999999999 9999999999999999999999999998 764
No 22
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=3.2e-42 Score=389.86 Aligned_cols=343 Identities=13% Similarity=0.194 Sum_probs=273.9
Q ss_pred CcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCC
Q 003117 430 LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDL 506 (846)
Q Consensus 430 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDl 506 (846)
+.+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|+. .++||+ .|++|+.++|||+.
T Consensus 15 ~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~ 92 (401)
T 1evl_A 15 MQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMN 92 (401)
T ss_dssp CCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCS
T ss_pred ecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCC
Confidence 356789999999999999999999999999999999999999999999976 6764 578999 89999999999999
Q ss_pred hHHHHHHHHHc----CCCCceEEEeeceeecCC--CCCC--CccceEecccccc------cH---HHHHHHHHHHHHcCC
Q 003117 507 TVPFARYVAMN----GLTSFKRHQIAKVYRRDN--PSKG--RYREFYQCDFDIA------DF---EVVKILTELLNELDI 569 (846)
Q Consensus 507 T~~iaR~~a~~----~~~plK~y~ig~VfR~e~--p~~G--r~REf~Q~g~ei~------Da---EvI~l~~eil~~lgl 569 (846)
|++++|.++.+ +.+|+|+||+|+|||+|. |+.| |.|||+|+|+|+| |+ |++.++.++++.||+
T Consensus 93 ~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl 172 (401)
T 1evl_A 93 CPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGF 172 (401)
T ss_dssp HHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999864 357999999999999998 4788 9999999999998 55 589999999999999
Q ss_pred CceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003117 570 GDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKL 649 (846)
Q Consensus 570 ~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l 649 (846)
+++.+++|+.+ -..+|. ...|.... ..+.+++...|-+
T Consensus 173 ~~~~~~~~~~~-----~~~~~~----------------~~~~~~a~--------------~~~~~~l~~~g~~------- 210 (401)
T 1evl_A 173 EKIVVKLSTRP-----EKRIGS----------------DEMWDRAE--------------ADLAVALEENNIP------- 210 (401)
T ss_dssp SCCEEEEECCC-----SSCCSC----------------HHHHHHHH--------------HHHHHHHHHTTCC-------
T ss_pred CceEEEEecCC-----cccCCC----------------HHHHHHHH--------------HHHHHHHHhcCCC-------
Confidence 88999999974 112221 11222111 0111111111100
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCC--CCccccC--C-C---cccCCCccchhhhhhCCCC
Q 003117 650 RQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLAR--GLDYYTG--V-G---SIAAGGRYDNLIGMFGTKQ 721 (846)
Q Consensus 650 ~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~r--gl~YYtG--~-g---~ia~GGRYD~Li~~fg~~~ 721 (846)
+.-++. -...+|. .+|+.+++ |.+||+| . + +...|+||+. ..|++.
T Consensus 211 ------~~~~~~-------------~~~~y~~----~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~---~~g~~~ 264 (401)
T 1evl_A 211 ------FEYQLG-------------EGAFYGP----KIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVG---EDNERK 264 (401)
T ss_dssp ------CEEETT-------------CSBTTBC----EEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEEC---TTSCEE
T ss_pred ------ceecCC-------------CccccCC----CcCeEEEecCCCeEEeeeeeeccccccccCCEEEC---CCCCCc
Confidence 000000 0011222 36777777 9999999 1 1 4567899974 345557
Q ss_pred ccceee-cc--hHHHHHHHHHHhhhhhhhcccc--CcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC-CCHHHHH
Q 003117 722 VPAVGV-SL--GIERVFTIMEQIQKERNQIIRA--TETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH-KKVMKLI 794 (846)
Q Consensus 722 ~pAVGf-si--gleRL~~~L~~~~~~~~~~~~~--~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~-~~l~~~~ 794 (846)
.|++|+ ++ |+||++.++.+++.+ .|++ +|++|+|+++++ ....+.++++.||++||+|++++. .++++++
T Consensus 265 ~p~~~~~~~~GgieRli~~l~e~~~~---~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~ 341 (401)
T 1evl_A 265 VPVMIHRAILGSMERFIGILTEEFAG---FFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKI 341 (401)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTT---CCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHHHhCC---cCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Confidence 899987 77 999999999986433 2443 789999999987 778999999999999999999984 6899999
Q ss_pred HHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 795 DRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 795 ~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
++|++.|+||+|+||++|+++|+|+||++.++++..|+++++++.+++.++
T Consensus 342 ~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 342 REHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 392 (401)
T ss_dssp HHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987764
No 23
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=6.5e-43 Score=375.47 Aligned_cols=246 Identities=23% Similarity=0.262 Sum_probs=211.0
Q ss_pred HHHHHHH--HHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHH--cCC-CCceE
Q 003117 450 KAFSIIT--EVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAM--NGL-TSFKR 524 (846)
Q Consensus 450 ~i~~~l~--~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~--~~~-~plK~ 524 (846)
.+++.++ ++|++|||++|.||+||+.++|.. + +|.|++|+.++||||+|+|++ ..+ +.. .|+|+
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~------d---~f~d~~g~~l~LRpd~T~~~a--~~~~~~~~~~p~R~ 73 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG------N---FFLDRKGNLFSIREDFTKTVL--NHRKRYSPDSQIKV 73 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS------S---CEEETTSCEEEECCCHHHHHH--HHHTTCTTCCCEEE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc------c---ccCCCCCCEEEeCCcChHHHH--HHHhhcCCCCceEE
Confidence 3455566 999999999999999999999854 1 567999999999999999999 222 235 89999
Q ss_pred EEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHH
Q 003117 525 HQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFR 597 (846)
Q Consensus 525 y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~ 597 (846)
||+|+|||+|+|+. |||+|+|+|+| |+|+|.++.++++.||++++.|+|||+++++.+++. ++++.+.
T Consensus 74 ~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~--~~~~~~~ 148 (275)
T 1usy_A 74 WYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKE--IPKDLHE 148 (275)
T ss_dssp ECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHTT--SCGGGHH
T ss_pred EEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHHh--CCHHHHH
Confidence 99999999999876 99999999998 899999999999999998999999999999999975 7778888
Q ss_pred HHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHH
Q 003117 598 TICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALE 677 (846)
Q Consensus 598 ~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~ 677 (846)
.++.+++++++..+++ +++..++++...+.+..++.+.|++ ++++++. .+ .+++++|+.++++|+
T Consensus 149 ~l~~~l~~~~~~~~~~----~l~~~~l~~~~~~~l~~l~~~~g~~-~~l~~l~-------~~---~~~l~~l~~l~~~l~ 213 (275)
T 1usy_A 149 KVLNLIDTKNLAEIEF----LSHMKKIDLSRVEKIIEDSIYRRSP-EHLKTMD-------LP---LSVREDLLSASSFLQ 213 (275)
T ss_dssp HHHHHHHTTCHHHHHH----HHHHTCCCCTHHHHHHHHHHHCCSG-GGGGTSC-------CC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHH----HHHhcCCCHHHHHHHHHHHHhhCCH-HHHHHHh-------cC---HHHHHHHHHHHHHHH
Confidence 9999999988876544 3456788888889999999998887 5554421 11 246899999999999
Q ss_pred -hcCCCceEEEecCCCCCCccccC----------CCcccCCCccchhhhhhCCCCccceeecchHHHH
Q 003117 678 -KSKCIDKVVFDLSLARGLDYYTG----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERV 734 (846)
Q Consensus 678 -~~g~~~~i~~Dlsl~rgl~YYtG----------~g~ia~GGRYD~Li~~fg~~~~pAVGfsigleRL 734 (846)
.+| ..++.|||+++||++|||| .++|++|||||++ +.||||||+|+||+
T Consensus 214 ~~~g-~~~~~~D~~lvRgldYYtG~vFe~~~~~~~~~i~~GGRYD~l-------~~pavGfsig~er~ 273 (275)
T 1usy_A 214 EKFP-TVSVEIDLTLARTIEEYCGLIFTIYDTSSSRLVAAGGEYTVN-------GEKGVGGSIFLEGK 273 (275)
T ss_dssp HHCS-SSEEEECCCCGGGGGTCSSEEEEEEETTTTEEEEEEEEEEET-------TEEEEEEEEEEEEE
T ss_pred HhcC-CCeEEEeccccCCCCccCCeEEEEEECCCCCeEeeecCCCCC-------CCCEEEEEEEeecc
Confidence 999 5689999999999999999 2489999999996 58999999999986
No 24
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=2.5e-43 Score=404.94 Aligned_cols=366 Identities=17% Similarity=0.137 Sum_probs=271.3
Q ss_pred ccCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCC
Q 003117 428 RRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRY 504 (846)
Q Consensus 428 ~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRp 504 (846)
+++.+.|+|++||+|.+++++++|++.++++|+++||+||.||+|++.++|.. +|++ .++||+|.|++|+.++|||
T Consensus 50 g~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~-sg~~d~~~~em~~~~d~~~~~~~LrP 128 (458)
T 2i4l_A 50 GMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRE-SGRYDAYGPEMLRIADRHKRELLYGP 128 (458)
T ss_dssp TCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSCTTSEEEECTTCCEEEECS
T ss_pred CCeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHh-cCCccccccceEEEEeCCCCeEEECC
Confidence 56778899999999999999999999999999999999999999999999965 4652 5889999999999999999
Q ss_pred ---CChHHHHHHHHH-cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cHHHHHH---HHHHHHHc
Q 003117 505 ---DLTVPFARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DFEVVKI---LTELLNEL 567 (846)
Q Consensus 505 ---DlT~~iaR~~a~-~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------DaEvI~l---~~eil~~l 567 (846)
|+|++++|...+ ++.+|+|+||+|+|||+| +|+.| |.|||+|+|+|+| |+|++.+ +.++|++|
T Consensus 129 t~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l 208 (458)
T 2i4l_A 129 TNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM 208 (458)
T ss_dssp CCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999998876 457899999999999999 89999 9999999999998 6777644 89999999
Q ss_pred CCCceEEEEcchhhHHHHHHhc-----CCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh
Q 003117 568 DIGDYEIKLNHRLLLDGMLEIC-----GVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSP 642 (846)
Q Consensus 568 gl~~~~i~Inh~~ll~~il~~~-----gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~ 642 (846)
|++ +.+.+||++.+.+.++.. ...++.. ..| -.... ..|+. ++.. +++ +.
T Consensus 209 Gl~-~~~~~~~~g~~gg~~s~e~~~l~~~ged~i-~~~--~~~~~-~n~~~-----~~~~-~~~--------------~l 263 (458)
T 2i4l_A 209 GLK-AIPMRAETGPIGGDLSHEFIVLAETGESGV-YID--RDVLN-LPVPD-----ENVD-YDG--------------DL 263 (458)
T ss_dssp TCC-EEEEECCCCSSCSSCEEEEEEECTTCSEEE-EEE--GGGGG-CCCCC-----TTCC-TTS--------------CC
T ss_pred CCc-eEEEEccccccCCccchhhhhhhhcCcceE-Eec--ccccc-cCHHH-----Hhcc-ccH--------------hH
Confidence 996 999999998877655421 1111100 000 00000 01110 0000 000 00
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------CCcccCCCccchhhh
Q 003117 643 LVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------VGSIAAGGRYDNLIG 715 (846)
Q Consensus 643 ~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~g~ia~GGRYD~Li~ 715 (846)
.++++..... .. ..... ++....+ . ..+.+|++++||++ +| ..+++.||||++.
T Consensus 264 ~~~l~~~~~~-~~-~~~~~------~~g~~~~--~-----~~~~~~l~~~rgl~--~G~iFelg~~~s~~~g~ry~~~-- 324 (458)
T 2i4l_A 264 TPIIKQWTSV-YA-ATEDV------HEPARYE--S-----EVPEANRLNTRGIE--VGQIFYFGTKYSDSMKANVTGP-- 324 (458)
T ss_dssp HHHHHHHHHS-CE-EETTT------CCTTHHH--H-----HSCTTTEEEEEEEE--EEEEEEEETHHHHHTTCEEECT--
T ss_pred HHHHhcCchh-hh-cChhh------ccccccc--C-----CCCCcCceeeeeec--cCcEEEecccccccCCcEEECC--
Confidence 0111111100 00 00000 0000000 0 01234556666655 55 2368899999763
Q ss_pred hhCCCCcc--ceeecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEcC---C-cHHHHHHHHHHHHHCCCeEEEEc
Q 003117 716 MFGTKQVP--AVGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNAKVKAEYMV 786 (846)
Q Consensus 716 ~fg~~~~p--AVGfsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~GI~ael~~ 786 (846)
+| ++.| ++||+||+||++.++.++..++ +..|+. +|++|+|++.+ + ....+.+++++||++|++|++++
T Consensus 325 -~G-~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~ 402 (458)
T 2i4l_A 325 -DG-TDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDD 402 (458)
T ss_dssp -TS-CEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred -CC-CEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 34 4566 7899999999999987764322 234665 68999999986 2 56889999999999999999998
Q ss_pred C-CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHH
Q 003117 787 H-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 840 (846)
Q Consensus 787 ~-~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L 840 (846)
. .++++++++|++.|+||+|+||++|+++|+|+||++.++++..|++++++++|
T Consensus 403 ~~~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 403 TDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp SSCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred CCCCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 4 68999999999999999999999999999999999999999999999987655
No 25
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=6.8e-40 Score=391.32 Aligned_cols=352 Identities=19% Similarity=0.240 Sum_probs=271.2
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCC-CeEeeCCCCh
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGG-ELCSLRYDLT 507 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G-~~l~LRpDlT 507 (846)
.+++|++||+|.++.+++++++.++++|+++||++|.||+|++.++|.. +|++ .++||+|.|.+| +.++|||+.|
T Consensus 258 ~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~ 336 (645)
T 1nyr_A 258 LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT-SGHWDHYQEDMFPPMQLDETESMVLRPMNC 336 (645)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH-HTHHHHCTTSSCCCEEETTTEEEEECSSSH
T ss_pred cCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhh-CCCccccccCcceeEecCCCeEEEeCCCCC
Confidence 3489999999999999999999999999999999999999999999976 5654 578999999999 9999999999
Q ss_pred HHHHHHHHHc----CCCCceEEEeeceeecCCCC--CC--CccceEecccccc-------c--HHHHHHHHHHHHHcCCC
Q 003117 508 VPFARYVAMN----GLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIA-------D--FEVVKILTELLNELDIG 570 (846)
Q Consensus 508 ~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~--~G--r~REf~Q~g~ei~-------D--aEvI~l~~eil~~lgl~ 570 (846)
++++|+++.+ +.+|+|+||+|+|||+|+++ .| |.|||+|+|+|+| | +|++.++.++|+.||++
T Consensus 337 ~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 337 PHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp HHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999975 35799999999999999886 56 9999999999998 6 89999999999999998
Q ss_pred ceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHH---HHHHHHcCCCHHHHHHHHHHHHhcCChHHHHH
Q 003117 571 DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIK---KEMVEEKGLSVETADRIGTFVKERGSPLVLLS 647 (846)
Q Consensus 571 ~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~---~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~ 647 (846)
++.+++|++... ..-..+|. .+ .|++.. .+.++..|++... ..|.
T Consensus 417 ~~~~~l~~~~~~-~~e~~~g~-~e---------------~~~~~~~~l~~~l~~~g~~~~~---------~~~~------ 464 (645)
T 1nyr_A 417 DYSFRLSYRDPE-DKEKYFDD-DD---------------MWNKAENMLKEAADELGLSYEE---------AIGE------ 464 (645)
T ss_dssp CEEEEEEECCCC-CSSSSSCC-HH---------------HHHHHHHHHHHHHHHHCCCCCC---------EESC------
T ss_pred eEEEEEeCCCcc-cchhhcCC-hH---------------HHHHHHHHHHHHHHHcCCCeEe---------cCCC------
Confidence 899999997421 00011221 11 232211 1111222222100 0010
Q ss_pred HHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCc-cccCCCcccCCCccchhhhhhCCCCccce-
Q 003117 648 KLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLD-YYTGVGSIAAGGRYDNLIGMFGTKQVPAV- 725 (846)
Q Consensus 648 ~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~-YYtG~g~ia~GGRYD~Li~~fg~~~~pAV- 725 (846)
..++.+.......+.+.. .+.+ .++++|++++++++ ||+|. . |+++.|++
T Consensus 465 ------~~~ygpki~~~~~d~lg~------~~~~-gtiq~D~~l~~~~d~~Y~~~----~-----------g~~~~P~~i 516 (645)
T 1nyr_A 465 ------AAFYGPKLDVQVKTAMGK------EETL-STAQLDFLLPERFDLTYIGQ----D-----------GEHHRPVVI 516 (645)
T ss_dssp ------SBTTBCEEEEEECCTTSC------CEEE-EEEEEESSHHHHTTCCEECT----T-----------SCEECCEEE
T ss_pred ------CceeCCccceehhhhhCc------hhhc-ceEEeecccccccceEEECC----C-----------CCccCcEEE
Confidence 011111000000000000 0111 27899999999999 89983 1 23457887
Q ss_pred --eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcC-C-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhc
Q 003117 726 --GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-D-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARES 800 (846)
Q Consensus 726 --GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~-~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~ 800 (846)
|+..|+||++.+|.++..+.-+.|. +|+||+|++++ + ...++.+++++||++||+|++++ +.++++++++|+..
T Consensus 517 h~~~~GgieR~i~~liE~~~~~~P~~l-ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~ 595 (645)
T 1nyr_A 517 HRGVVSTMERFVAFLTEETKGAFPTWL-APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQ 595 (645)
T ss_dssp EEEEEEEHHHHHHHHHHHHTTCCCTTT-CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred EeccCCcHHHHHHHHHHHhcCCCCCCC-CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhc
Confidence 8888999999888776443323343 78999999998 6 67899999999999999999998 46899999999999
Q ss_pred CCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 801 KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 801 gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
|+||+++||++|+++|+|+||++.++++..|+++++++.|++++.
T Consensus 596 g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 596 KIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp TCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988764
No 26
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=7.7e-38 Score=372.17 Aligned_cols=346 Identities=14% Similarity=0.203 Sum_probs=268.2
Q ss_pred cCcccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCC
Q 003117 429 RLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYD 505 (846)
Q Consensus 429 ~~~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpD 505 (846)
...+.++|++||+|.++.++++|++.+++.|+++||++|.||+|++.++|.. +|++ .++||+ .|++|+.++|||+
T Consensus 255 ~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~ 332 (642)
T 1qf6_A 255 HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPM 332 (642)
T ss_dssp ECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSS
T ss_pred ccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCC
Confidence 3456799999999999999999999999999999999999999999999976 6765 478999 8999999999999
Q ss_pred ChHHHHHHHHHc----CCCCceEEEeeceeecCCC--CCC--CccceEecccccc------cHH---HHHHHHHHHHHcC
Q 003117 506 LTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP--SKG--RYREFYQCDFDIA------DFE---VVKILTELLNELD 568 (846)
Q Consensus 506 lT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p--~~G--r~REf~Q~g~ei~------DaE---vI~l~~eil~~lg 568 (846)
.|++++|+++.+ +.+|+|+||+|+|||+|.+ +.| |.|||+|+|+|+| ++| ++.++.++++.||
T Consensus 333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lG 412 (642)
T 1qf6_A 333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFG 412 (642)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999864 4689999999999999987 678 9999999999998 566 5889999999999
Q ss_pred CCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003117 569 IGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSK 648 (846)
Q Consensus 569 l~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~ 648 (846)
++++.+.++++. -..+| + ...|+.... .+.+++.-.|-+
T Consensus 413 l~~~~v~l~~~~-----e~~~g-~---------------~e~w~~a~~--------------~l~~~l~~~g~~------ 451 (642)
T 1qf6_A 413 FEKIVVKLSTRP-----EKRIG-S---------------DEMWDRAEA--------------DLAVALEENNIP------ 451 (642)
T ss_dssp CCCCEEEEECCC-----SSCCS-C---------------HHHHHHHHH--------------HHHHHHHTTTCC------
T ss_pred CCceEEEEecCc-----ccccC-C---------------HHHHHHHHH--------------HHHHHHHHcCCC------
Confidence 988999999974 01122 1 122332111 111111111111
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCC--CCCCccccCC---C---cccCCCccchhhhhhCCC
Q 003117 649 LRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSL--ARGLDYYTGV---G---SIAAGGRYDNLIGMFGTK 720 (846)
Q Consensus 649 l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl--~rgl~YYtG~---g---~ia~GGRYD~Li~~fg~~ 720 (846)
+.-++. + ...+|. + +|+.+ ..|.+||+|. + +-..|+|| +...|++
T Consensus 452 -------~~~~~g--~-----------~afygp--k--~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y---~~~~g~~ 504 (642)
T 1qf6_A 452 -------FEYQLG--E-----------GAFYGP--K--IEFTLYDCLDRAWQCGTVQLDFSLPSRLSASY---VGEDNER 504 (642)
T ss_dssp -------CEEETT--C-----------SCTTCC--E--EEEEEECTTCCEEEEEEEEEESSHHHHTTCCE---ECTTSCE
T ss_pred -------cEEcCC--C-----------cccccC--c--ccEEEEccCCceEEeeeEEEeccCCccCCCEE---EecCCCC
Confidence 000000 0 011232 2 33322 3477888871 1 23345555 2334556
Q ss_pred Cccceee-cc--hHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHH
Q 003117 721 QVPAVGV-SL--GIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV-HKKVMKLID 795 (846)
Q Consensus 721 ~~pAVGf-si--gleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~ 795 (846)
..|++|+ ++ ++||++.+|.++..+.-|.|. +|+||+|+++++ ...++.+++++||++||+|++++ +.+++++++
T Consensus 505 ~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~l-aP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~kir 583 (642)
T 1qf6_A 505 KVPVMIHRAILGSMERFIGILTEEFAGFFPTWL-APVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIR 583 (642)
T ss_dssp ECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTT-CSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHH
T ss_pred cCcEEEEeccCCCHHHHHHHHHHHhcCCCCccc-CCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 6788876 65 999999998887543323343 789999999987 67899999999999999999998 478999999
Q ss_pred HHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 796 RARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 796 ~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|+++++
T Consensus 584 ~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 633 (642)
T 1qf6_A 584 EHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 633 (642)
T ss_dssp HHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988764
No 27
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=2e-39 Score=373.73 Aligned_cols=347 Identities=16% Similarity=0.208 Sum_probs=256.1
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
.|+|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.. +|+. .++||+| |++|+.++||||.|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCCcEEEEccccHHH
Confidence 689999999999999999999999999999999999999999999966 4543 5789999 9999999999999999
Q ss_pred HHHHHHHc----C---CCCceEEEeeceeecCCCC--CC--CccceEecccccc-------c--HHHHHHHHHHHHH-cC
Q 003117 510 FARYVAMN----G---LTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIA-------D--FEVVKILTELLNE-LD 568 (846)
Q Consensus 510 iaR~~a~~----~---~~plK~y~ig~VfR~e~p~--~G--r~REf~Q~g~ei~-------D--aEvI~l~~eil~~-lg 568 (846)
++|+++.+ + .+|+|+||+|+|||+|.++ .| |.|||+|+|+|+| | +|++.++.++++. ||
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lG 194 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK 194 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998864 3 7899999999999999887 88 9999999999998 6 8899999999999 99
Q ss_pred C----CceEEEEcchh--hH-HHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 003117 569 I----GDYEIKLNHRL--LL-DGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGS 641 (846)
Q Consensus 569 l----~~~~i~Inh~~--ll-~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~ 641 (846)
+ +++.+.+||+. ++ +. ..|... .|++....+. +.+...+...|-
T Consensus 195 l~~~~~~~~l~i~~~~~~~~~e~---~~g~~~----------------~~d~~~~~l~----------~~~~~~l~~~~~ 245 (471)
T 3a32_A 195 LGVSSETFKVRLSMSDKSLIGKE---FMGSKE----------------EWEGAEEALR----------EAASRINEKYGI 245 (471)
T ss_dssp CCCSTTTEEEEEECCCGGGBTTT---BCSCHH----------------HHHHHHHHHH----------HHHHHHHHHHCC
T ss_pred CCcCCCCeEEEEecCCCCccccc---ccCCHH----------------HHHHHHHHHH----------HHHHHHHHhcCC
Confidence 9 78999999984 21 11 112110 1222211111 011111000111
Q ss_pred hHHHHHHHHhhcccccccch---HHH---HHHHHHHHHHHHHhcCCCceEEEecCCCCCCc--ccc----CCC-cccCCC
Q 003117 642 PLVLLSKLRQEGSLFLENSS---AKL---ALDDLEILFQALEKSKCIDKVVFDLSLARGLD--YYT----GVG-SIAAGG 708 (846)
Q Consensus 642 ~~~~l~~l~~~~~~~~~~~~---~~~---al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~--YYt----G~g-~ia~GG 708 (846)
+... ......++.... ... ++.++ ..+| ++++|++++|+++ ||| |.- ++..
T Consensus 246 ~~~~----~~~~~~~~gp~i~~~l~d~~~~l~~~-------~~~g---~~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i-- 309 (471)
T 3a32_A 246 DIVE----LEGEAAFYGPKLDFIMMVEESGVSKE-------WQMG---TIQFDFNLPRRFRLYDVVREEFGIEEVYII-- 309 (471)
T ss_dssp EEEE----ETTCSBTTBCEEEEEEEEESSSCEEE-------EEEE---EEEEESSHHHHTTHHHHHHHHHCCSCEEEE--
T ss_pred ceEe----cccchhhCCCccceEEeccHHhhhhh-------heee---eEEecccccccCCceEeccccCCceeeEEE--
Confidence 1000 000001110000 000 00000 1123 6899999999999 999 721 0000
Q ss_pred ccchhhhhhCCCCccceeecchHHHHHHHHHHhhhhhhhcccc--CcceEEEEEcC------C-cHHHHHHHHHHHHHCC
Q 003117 709 RYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRA--TETQVLVGLLG------D-KLPLAAELVSELWNAK 779 (846)
Q Consensus 709 RYD~Li~~fg~~~~pAVGfsigleRL~~~L~~~~~~~~~~~~~--~~~dVlV~~~~------~-~~~~a~~la~~Lr~~G 779 (846)
+ -+...|+||++.++.++... .|++ +|++|+|++.+ + ....+.+++++||++|
T Consensus 310 ---------~------~~i~GgieRli~~lie~~~g---~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~G 371 (471)
T 3a32_A 310 ---------H------RALLGSIERFLGVYLEHRRG---RMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKG 371 (471)
T ss_dssp ---------E------EEEEEEHHHHHHHHHHHTTT---CCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred ---------e------ccccCcHHHHHHHHHHHhCC---CCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCC
Confidence 0 01223999999766665432 2443 68999999987 3 5678999999999999
Q ss_pred CeEEEEc--CCCHHHHHHHHH-hcCCCEEEEEcCcccccCeEEEEECCCCc--eeeechH-----HHHHHHHHHh
Q 003117 780 VKAEYMV--HKKVMKLIDRAR-ESKIPWMVIVGERELNEGIVKLKNIDTTQ--EEVISRS-----NFVEEIQRRL 844 (846)
Q Consensus 780 I~ael~~--~~~l~~~~~~A~-~~gi~~iviIg~~e~~~g~V~Vk~l~~~~--e~~v~~~-----elv~~L~~~l 844 (846)
++|++++ +.++++++++|+ ..|+||+|+||++|+++|+|+||++.+++ +..|+++ ++++.+.+.+
T Consensus 372 i~v~~D~~~~~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~ 446 (471)
T 3a32_A 372 FRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVA 446 (471)
T ss_dssp CEEEEEEEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHH
Confidence 9999998 468999999999 99999999999999999999999999988 6888888 8887776654
No 28
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.5e-37 Score=357.50 Aligned_cols=319 Identities=16% Similarity=0.113 Sum_probs=244.5
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC----CCeEeeC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLR 503 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~----G~~l~LR 503 (846)
.+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|..++|+. .++||+|.|++ |+.++||
T Consensus 30 ~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LR 109 (477)
T 1hc7_A 30 YGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVR 109 (477)
T ss_dssp ECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEEC
T ss_pred ecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEc
Confidence 3468999999999999999999999999999999999999999999997766753 58899999987 8899999
Q ss_pred CCChHHHHHHHHHc----CCCCceEEEeeceeecCCCCCC--CccceEecccccc-------cHHHHHH---HHHHH-HH
Q 003117 504 YDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKG--RYREFYQCDFDIA-------DFEVVKI---LTELL-NE 566 (846)
Q Consensus 504 pDlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~G--r~REf~Q~g~ei~-------DaEvI~l---~~eil-~~ 566 (846)
|+.|++++|.++.+ +.+|+|+||+|+|||+|.+..| |.|||+|+|+|+| |+|++.+ +.+++ +.
T Consensus 110 P~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~ 189 (477)
T 1hc7_A 110 PTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREY 189 (477)
T ss_dssp SCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999864 4689999999999999965558 9999999999996 6777654 89999 89
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
||+. +.+.+++..- .+.|.. ..| +
T Consensus 190 Lgl~-~~~~~~~~~e-----~~~g~~----------------~~~-----------------------------~----- 213 (477)
T 1hc7_A 190 AAIP-VIEGLKTEKE-----KFAGAV----------------YTT-----------------------------T----- 213 (477)
T ss_dssp HCCC-CEEEECCTTT-----SCTTSS----------------EEE-----------------------------E-----
T ss_pred cCCe-EEEEeCChHH-----hcCCcc----------------cce-----------------------------E-----
Confidence 9996 8888876310 000000 000 0
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-CCcccCCCccchhhhhhCC-CCccc
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-VGSIAAGGRYDNLIGMFGT-KQVPA 724 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-~g~ia~GGRYD~Li~~fg~-~~~pA 724 (846)
+. .+..+ | ..++. +..|+.| ..+.+.|+||++. .|. +.+|.
T Consensus 214 --ie----~~~~d--------------------g--r~~~~------gt~~~lg~~~s~~~g~~y~~~---~G~~~~~~~ 256 (477)
T 1hc7_A 214 --IE----ALMKD--------------------G--KALQA------GTSHYLGENFARAFDIKFQDR---DLQVKYVHT 256 (477)
T ss_dssp --EE----EECTT--------------------S--CEEEE------EEEEEEETHHHHHTTCEEECT---TSCEEECEE
T ss_pred --EE----EEcCC--------------------C--cEEEE------eeeEEcccccccccCeEEECC---CCCEEeeeE
Confidence 00 00000 0 00000 0111111 1256788899752 233 23567
Q ss_pred eeecchHHHHHHHHHHhhhh-hhhcccc--CcceEEEEEcCC------cHHHHHHHHHHHHHCCCeEEEEcC--CCHHHH
Q 003117 725 VGVSLGIERVFTIMEQIQKE-RNQIIRA--TETQVLVGLLGD------KLPLAAELVSELWNAKVKAEYMVH--KKVMKL 793 (846)
Q Consensus 725 VGfsigleRL~~~L~~~~~~-~~~~~~~--~~~dVlV~~~~~------~~~~a~~la~~Lr~~GI~ael~~~--~~l~~~ 793 (846)
+||+++ ||++.+|.+++.+ .+..||+ +|+||+|+++++ ....+.++++.||++||+|++++. .+++++
T Consensus 257 ~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k 335 (477)
T 1hc7_A 257 TSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYK 335 (477)
T ss_dssp EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHH
T ss_pred eeccHH-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence 889999 9999999776432 2234554 789999999974 357899999999999999999975 579999
Q ss_pred HHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 794 IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 794 ~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
+++|+..|+||+|+||++|+++|+|+||++. +++..|+++++++.|++.+
T Consensus 336 ~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l 385 (477)
T 1hc7_A 336 FHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKL 385 (477)
T ss_dssp HHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999987765
No 29
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=4.5e-37 Score=352.41 Aligned_cols=312 Identities=17% Similarity=0.204 Sum_probs=250.8
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC----CCeEeeCC
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~----G~~l~LRp 504 (846)
..++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|..++|+. .++||+|.|++ |+.++|||
T Consensus 25 ~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP 104 (459)
T 1nj8_A 25 YPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRP 104 (459)
T ss_dssp STTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECS
T ss_pred CCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECC
Confidence 478999999999999999999999999999999999999999999997667764 57899999986 88999999
Q ss_pred CChHHHHHHHHHc----CCCCceEEEeeceeecCCC-CCC--CccceE-ecccccc-------cHH---HHHHHHHHHHH
Q 003117 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFY-QCDFDIA-------DFE---VVKILTELLNE 566 (846)
Q Consensus 505 DlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p-~~G--r~REf~-Q~g~ei~-------DaE---vI~l~~eil~~ 566 (846)
+.|++++|+++.+ +.+|+|+||+|+|||+|++ +.| |.|||+ |+|+|++ |+| ++.++.++++.
T Consensus 105 ~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~ 184 (459)
T 1nj8_A 105 TSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDT 184 (459)
T ss_dssp SSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 4689999999999999998 778 999999 9999986 566 88999999999
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
||+. +.+.+++.. ++ +.|.+ .
T Consensus 185 LGl~-~~~~~~~~~--------------------------ek-----------------------------~~ga~-~-- 205 (459)
T 1nj8_A 185 LGIP-YLISKRPEW--------------------------DK-----------------------------FPGAE-Y-- 205 (459)
T ss_dssp HTCC-CEEEEECTT--------------------------SC-----------------------------CTTCS-E--
T ss_pred CCCc-eEEeecCch--------------------------hh-----------------------------cCCcc-c--
Confidence 9996 777766420 00 00110 0
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------CCcccCCCccchhhhhhCC
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------VGSIAAGGRYDNLIGMFGT 719 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~g~ia~GGRYD~Li~~fg~ 719 (846)
...++.-+..|..++.| ..+.+.|+||++. -|+
T Consensus 206 -------------------------------------~~~ie~~~~dg~~~e~gt~~~lg~~~s~~~~~~Y~~~---~G~ 245 (459)
T 1nj8_A 206 -------------------------------------TMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETP---TGD 245 (459)
T ss_dssp -------------------------------------EEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECT---TSS
T ss_pred -------------------------------------ceeEEEEcCCCcEEEEEEEeecccccccccCeEEECC---CCC
Confidence 00000000012222222 1146778999862 132
Q ss_pred -CCccceeecchHHHHHHHHHHhhhh-hhhcccc--CcceEEEEEc-C-C----cHHHHHHHHHHHHHCCCeEEEEcC-C
Q 003117 720 -KQVPAVGVSLGIERVFTIMEQIQKE-RNQIIRA--TETQVLVGLL-G-D----KLPLAAELVSELWNAKVKAEYMVH-K 788 (846)
Q Consensus 720 -~~~pAVGfsigleRL~~~L~~~~~~-~~~~~~~--~~~dVlV~~~-~-~----~~~~a~~la~~Lr~~GI~ael~~~-~ 788 (846)
+.+|.+||+++ ||++.+|.+++.+ .+..|++ +|+||+|+++ + + ....+.+++++||++ |+|++++. .
T Consensus 246 ~~~v~~~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~ 323 (459)
T 1nj8_A 246 KDYAYQTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDI 323 (459)
T ss_dssp EEECEEEEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCS
T ss_pred EeeeeEeeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCC
Confidence 23468889999 9999999776432 2234554 7899999999 5 3 467899999999999 99999984 6
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 789 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 789 ~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++++++++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|++.+
T Consensus 324 ~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l 379 (459)
T 1nj8_A 324 RPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTL 379 (459)
T ss_dssp CHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999987765
No 30
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=1e-35 Score=340.54 Aligned_cols=348 Identities=16% Similarity=0.191 Sum_probs=253.0
Q ss_pred cccCCcccccChhHHHHHHHHHHHHHHHH-HHCCCeeecCCccccccccccccCCC---cCceEEEEcC--CCCeEeeCC
Q 003117 431 PKLPKGTRDFAKEQMAVREKAFSIITEVF-KRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ--GGELCSLRY 504 (846)
Q Consensus 431 ~~~p~G~~D~lp~~~~~~~~i~~~l~~vf-~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~--~G~~l~LRp 504 (846)
.+..+|++||+|.++.+++.|++.+++.| +++||++|.||+|++.++|.. +|+. .++||.|.|+ +|+.++|||
T Consensus 50 ~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~emy~~~d~~~~~~~l~LrP 128 (460)
T 3uh0_A 50 DPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEK-SGHWENYADDMFKVETTDEEKEEYGLKP 128 (460)
T ss_dssp CTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHH-HTCTTTSGGGSCEECC------CEEECS
T ss_pred ccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHh-cCCccccccceEEEecCCCCCceEEEcc
Confidence 34589999999999999999999999999 999999999999999999975 6764 4789999987 588999999
Q ss_pred CChHHHHHHHHHc----CCCCceEEEeeceeecCCCC--CC--CccceEecccccc------cHH---HHHHHHHHH-HH
Q 003117 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPS--KG--RYREFYQCDFDIA------DFE---VVKILTELL-NE 566 (846)
Q Consensus 505 DlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~--~G--r~REf~Q~g~ei~------DaE---vI~l~~eil-~~ 566 (846)
+.|++++++++.. +.+|+|+||+|+|||+|.++ .| |.|||+|.|+++| ++| ++.++.+++ +.
T Consensus 129 t~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~ 208 (460)
T 3uh0_A 129 MNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKI 208 (460)
T ss_dssp CSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998863 46799999999999999885 78 9999999999998 455 788999999 99
Q ss_pred cCCC--------ceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003117 567 LDIG--------DYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKE 638 (846)
Q Consensus 567 lgl~--------~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~ 638 (846)
||+. ++.+.++.+. -++.| +.+ .|++....|. ..+.-
T Consensus 209 lGl~~~~~~~~~~~~~~l~t~p-----e~~~G-~~~---------------~w~~ae~~L~--------------~~l~~ 253 (460)
T 3uh0_A 209 FPFVKGGSGAESNYFINFSTRP-----DHFIG-DLK---------------VWNHAEQVLK--------------EILEE 253 (460)
T ss_dssp SCCC-----CCSSCEEEEECCC-----SSCCS-CHH---------------HHHHHHHHHH--------------HHHHH
T ss_pred cCCCCcccccccceEEEEccCC-----cccCC-CHH---------------HHHHHHHHHH--------------HHHHH
Confidence 9998 7999998753 12223 222 2332211111 10000
Q ss_pred cCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCC---ceEEEecCCCCCCccccCCCcccCCCccchh-h
Q 003117 639 RGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCI---DKVVFDLSLARGLDYYTGVGSIAAGGRYDNL-I 714 (846)
Q Consensus 639 ~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~---~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~L-i 714 (846)
.|-+.. +......++..... +.+.+..|.. .+++ +|||. +.|||-. .
T Consensus 254 ~g~~~~----~~~g~gafygpkid----------~~~~d~~gr~~q~~Tiq--------ld~~~-------~~rf~l~y~ 304 (460)
T 3uh0_A 254 SGKPWK----LNPGDGAFYGPKLD----------IMVTDHLRKTHQVATIQ--------LDFQL-------PERFDLKFK 304 (460)
T ss_dssp HTCCEE----EETTCSCSSCCEEE----------EEEECTTSCEEEEEEEE--------EESHH-------HHHTTCCEE
T ss_pred hCCCee----ECCCccccccceEE----------EEEEccCCCeeeecccc--------ccccc-------ccccceEEE
Confidence 011000 00000011110000 0000111110 1222 33333 2344432 1
Q ss_pred hhhCCCCccce----eecchHHHHHHHHHHhhhhhhhccccCcceEEEEEcCC----cHHHHHHHHHHHHHC--------
Q 003117 715 GMFGTKQVPAV----GVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD----KLPLAAELVSELWNA-------- 778 (846)
Q Consensus 715 ~~fg~~~~pAV----GfsigleRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~----~~~~a~~la~~Lr~~-------- 778 (846)
..-|++..|++ +|+ ++||++.+|.++....-+.| .+|+||+|+++++ ...++.+++++|+++
T Consensus 305 ~~~g~~~~P~~ih~~~~G-g~eRli~~Lie~~~g~~P~~-laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~ 382 (460)
T 3uh0_A 305 DQDNSYKRPIMIHRATFG-SIERFMALLIDSNEGRWPFW-LNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEP 382 (460)
T ss_dssp CTTSCEECCEEEEEEEEE-EHHHHHHHHHHHHTTCCCGG-GCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCC
T ss_pred CCCCCccCcEEEecCcch-HHHHHHHHHHHHcCCCCCCC-CCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccc
Confidence 12244567877 477 89999999988643332334 3789999999985 357899999999999
Q ss_pred ------CCeEEEEc-CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCc-eeeechHHHHHHHHHHhh
Q 003117 779 ------KVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ-EEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 779 ------GI~ael~~-~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~-e~~v~~~elv~~L~~~l~ 845 (846)
||+|++++ +.++++++++|++.|+||+|+||++|+++|+|+||++.+++ +..|+++|++++|+++++
T Consensus 383 ~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 383 VPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp CCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHH
Confidence 99999998 47899999999999999999999999999999999999999 999999999999998875
No 31
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.1e-35 Score=344.06 Aligned_cols=312 Identities=18% Similarity=0.200 Sum_probs=250.6
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC----CCeEeeCC
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~----G~~l~LRp 504 (846)
+.++|++||+|.++.++++|++.++++|++ ||++|.||+|++.++|..++|+. .++||+|.|++ ++.++|||
T Consensus 58 ~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrP 136 (501)
T 1nj1_A 58 YPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRP 136 (501)
T ss_dssp CSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECS
T ss_pred CCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEcc
Confidence 467999999999999999999999999999 99999999999999997756653 57899999876 78999999
Q ss_pred CChHHHHHHHHHc----CCCCceEEEeeceeecCCC-CCC--CccceE-ecccccc-------cHH---HHHHHHHHHHH
Q 003117 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNP-SKG--RYREFY-QCDFDIA-------DFE---VVKILTELLNE 566 (846)
Q Consensus 505 DlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p-~~G--r~REf~-Q~g~ei~-------DaE---vI~l~~eil~~ 566 (846)
+.|++++|+++.+ +.+|+|+||+|+|||+|.+ ..| |.|||+ |+|++++ ++| ++.++.++++.
T Consensus 137 t~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 216 (501)
T 1nj1_A 137 TSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNS 216 (501)
T ss_dssp SSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 3689999999999999988 778 999999 9999975 566 48889999999
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
||+. |.+.++... + .+ .+.+
T Consensus 217 Lgl~-~~~~~~~~~-------------e---------------------------~~---------------~~a~---- 236 (501)
T 1nj1_A 217 LGIP-YLITRRPPW-------------D---------------------------KF---------------PGSE---- 236 (501)
T ss_dssp HTCC-CEEEECCTT-------------T---------------------------SC---------------TTCS----
T ss_pred CCCe-EEEEeCCch-------------h---------------------------hc---------------CCcc----
Confidence 9995 777765321 0 00 0000
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccC-------CCcccCCCccchhhhhhCC
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG-------VGSIAAGGRYDNLIGMFGT 719 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG-------~g~ia~GGRYD~Li~~fg~ 719 (846)
..+.+|..+..|..|+.| ..+...|+||++- . |+
T Consensus 237 ------------------------------------~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~--~-g~ 277 (501)
T 1nj1_A 237 ------------------------------------YTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETP--E-GD 277 (501)
T ss_dssp ------------------------------------EEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECT--T-SC
T ss_pred ------------------------------------cceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECC--C-CC
Confidence 011222222233334433 1145678899762 2 43
Q ss_pred C-CccceeecchHHHHHHHHHHhhhh-hhhcccc--CcceEEEEEc-C-C----cHHHHHHHHHHHHHCCCeEEEEcC-C
Q 003117 720 K-QVPAVGVSLGIERVFTIMEQIQKE-RNQIIRA--TETQVLVGLL-G-D----KLPLAAELVSELWNAKVKAEYMVH-K 788 (846)
Q Consensus 720 ~-~~pAVGfsigleRL~~~L~~~~~~-~~~~~~~--~~~dVlV~~~-~-~----~~~~a~~la~~Lr~~GI~ael~~~-~ 788 (846)
. .++.+||+++ +|++.+|.+++.+ .+..||+ +|++|+|+++ + + ....+.+|+++||++||+|++++. .
T Consensus 278 ~~~~h~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~ 356 (501)
T 1nj1_A 278 HEYVHQTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDI 356 (501)
T ss_dssp EEECEEEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSS
T ss_pred EEeeeeccccHH-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 2 2457899999 9999999876432 2234554 7899999999 5 3 467899999999999999999984 6
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHh
Q 003117 789 KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 789 ~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l 844 (846)
++++++++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|++.+
T Consensus 357 s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l 412 (501)
T 1nj1_A 357 RAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELM 412 (501)
T ss_dssp CHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999987765
No 32
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=8.3e-35 Score=346.53 Aligned_cols=385 Identities=15% Similarity=0.176 Sum_probs=235.6
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHH-HCCCeeecCCccccccccccccCCC---c---------CceEEEEcC---
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGED---S---------KLIYDLADQ--- 495 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~-~~G~~eI~tP~le~~e~~~~~~g~~---~---------~~~y~~~D~--- 495 (846)
..++|++||+|.++.++++|++.+++.|. +.||.||.||+|+|.++|.. +|++ . +++|++ |+
T Consensus 88 ~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~-SGH~~~f~d~m~~~~~~~e~yr~-D~l~e 165 (693)
T 2zt5_A 88 GGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKT-SGHVDKFADFMVKDVKNGECFRA-DHLLK 165 (693)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHH-HTHHHHCEEEEEEBSSSCCEEEH-HHHHH
T ss_pred CCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhh-cCCcccccccceeeccCCceeec-cHhHH
Confidence 34699999999999999999999999998 56999999999999999965 5553 1 356665 33
Q ss_pred ----------------------------------------------------------------------CCCeEeeCCC
Q 003117 496 ----------------------------------------------------------------------GGELCSLRYD 505 (846)
Q Consensus 496 ----------------------------------------------------------------------~G~~l~LRpD 505 (846)
+|+.+.||||
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPE 245 (693)
T 2zt5_A 166 AHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPE 245 (693)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccc
Confidence 5689999999
Q ss_pred ChHHH----HHHHHH-cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc----c-----------H--------
Q 003117 506 LTVPF----ARYVAM-NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA----D-----------F-------- 554 (846)
Q Consensus 506 lT~~i----aR~~a~-~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~----D-----------a-------- 554 (846)
.|.++ .|.+.. ++.+|+|+||||++||+| +|+.| |.|||+|.|+|+| + +
T Consensus 246 taqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 246 TAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp SHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred cchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 99999 888877 478999999999999999 89999 9999999999998 1 1
Q ss_pred ------------------------H----HHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHH----------
Q 003117 555 ------------------------E----VVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKF---------- 596 (846)
Q Consensus 555 ------------------------E----vI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~---------- 596 (846)
| +|.++.+++..||+++..+++.... .+.. +.-..+.+
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~-~~e~---a~ya~~~~d~e~~~~~g~ 401 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHM-ENEM---AHYACDCWDAESKTSYGW 401 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECC-GGGS---CTTCSSEEEEEEEETTEE
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccC-chhh---ccchhhhhhehhhccCCh
Confidence 2 6778899999999975434432110 0000 00000000
Q ss_pred HHHHHHhhhhChhhHHHHHHHHHHHcCCC-------HHHHHHHHHHHHhcCChHHHHHHHHhhcccccccchHHHHHHHH
Q 003117 597 RTICSSIDKLDKQSFEQIKKEMVEEKGLS-------VETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDL 669 (846)
Q Consensus 597 ~~v~~~l~kl~k~~~~~i~~eL~~~~gl~-------~~~~~~L~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L 669 (846)
..+-..-++.+ ..+...... ....+. +..++.... ..|.. ..-.++...+..+. +.......+++
T Consensus 402 ~e~~~~a~r~~-~dL~~~~~~--s~~~l~~~~~~~~p~~~~~~~~---~~~~~-~~g~~i~~~Ap~i~-d~L~~~~~~~~ 473 (693)
T 2zt5_A 402 IEIVGCADRSC-YDLSCHARA--TKVPLVAEKPLKEPKTVNVVQF---EPSKG-AIGKAYKKDAKLVM-EYLAICDECYI 473 (693)
T ss_dssp EEEEEEECCCS-HHHHHHHHH--HTCCCCEEEC-----------------------------------------------
T ss_pred HHHHHHHHHHH-HHHHHHHHH--hccchhhhcccCcccceeeeee---cCChH-HHHHHHHhcccHHH-HHhhhhhHHHH
Confidence 00000000000 000000000 000111 000000000 00000 00000100000000 00011233456
Q ss_pred HHHHHHHHhcCCCceEEEe---cCCCC---CCccccCCCcccCCCccchhhhhhCCCCccce-eecchHHHHHHHHHHhh
Q 003117 670 EILFQALEKSKCIDKVVFD---LSLAR---GLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAV-GVSLGIERVFTIMEQIQ 742 (846)
Q Consensus 670 ~~l~~~l~~~g~~~~i~~D---lsl~r---gl~YYtG~g~ia~GGRYD~Li~~fg~~~~pAV-GfsigleRL~~~L~~~~ 742 (846)
..+..+|+.+|. .+|.+| +.+.. +.++|.. -..|||| +|+| |+|+|++|++.+|.+++
T Consensus 474 ~~l~~~L~~~g~-i~i~vdGt~Fei~~~~~~~~~y~~---~~~Ggry-----------~P~Vi~~s~GigRli~aLie~~ 538 (693)
T 2zt5_A 474 TEMEMLLNEKGE-FTIETEGKTFQLTKDMINVKRFQK---TLYVEEV-----------VPNVIEPSFGLGRIMYTVFEHT 538 (693)
T ss_dssp ------------------------------------------CCEEE-----------CCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-EEEEECCEEEEecccccceeeEEe---ccCCcEe-----------cCcceeCeehHHHHHHHHHHHh
Confidence 666666777762 245555 33322 1232332 1256666 6777 99999999999997763
Q ss_pred hh------h--hhcccc--CcceEEEEEcCC---cHHHHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHhcCCCEEEEE
Q 003117 743 KE------R--NQIIRA--TETQVLVGLLGD---KLPLAAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIV 808 (846)
Q Consensus 743 ~~------~--~~~~~~--~~~dVlV~~~~~---~~~~a~~la~~Lr~~GI~ael~~-~~~l~~~~~~A~~~gi~~iviI 808 (846)
.. . ...|++ +|+||+|+++++ ....+.++++.||++||+|++++ +.++++++++|++.|+||+|+|
T Consensus 539 ~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 539 FHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp EEECSSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 22 1 234554 689999999985 57899999999999999999998 5689999999999999999999
Q ss_pred cCccc--ccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 809 GEREL--NEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 809 g~~e~--~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
|++|+ ++|+|+||++.++++..|++++++++|++.+.
T Consensus 619 G~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~ 657 (693)
T 2zt5_A 619 DFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLAN 657 (693)
T ss_dssp CHHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHT
T ss_pred cchhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHh
Confidence 99999 99999999999999999999999999987664
No 33
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.98 E-value=2.2e-32 Score=316.62 Aligned_cols=342 Identities=17% Similarity=0.146 Sum_probs=239.5
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHH--HCCCeeecCCccccccccccccCCC---cCceEE---------------
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFK--RHGAMALDTPVFEMRETLMGKYGED---SKLIYD--------------- 491 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~--~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~--------------- 491 (846)
+.++|++||+|.++.++++|++.+++.|. ++||.||.||+|++.++|.. +|+. .+.||+
T Consensus 26 ~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~-SGh~~~f~d~m~~~~~~~~~~r~d~l~~ 104 (505)
T 1ati_A 26 GGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHY-SGHEATFADPMVDNRITKKRYRLDHLLK 104 (505)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHH-TSHHHHCEEEEEEC--------------
T ss_pred CCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHh-cCChhhcCccceeccccccccchhhhhh
Confidence 45699999999999999999999999999 99999999999999999865 5543 234554
Q ss_pred ----------------------E------E-----------------cCC-------------------------CCeEe
Q 003117 492 ----------------------L------A-----------------DQG-------------------------GELCS 501 (846)
Q Consensus 492 ----------------------~------~-----------------D~~-------------------------G~~l~ 501 (846)
| . +.+ ++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~ 184 (505)
T 1ati_A 105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY 184 (505)
T ss_dssp ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE
T ss_pred hhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCcccccccee
Confidence 2 1 111 35789
Q ss_pred eCCCChHHH----HHHHHHc-CCCCceEEEeeceeecC-CCCCC--CccceEecccccc---------cHHHHHHHHHHH
Q 003117 502 LRYDLTVPF----ARYVAMN-GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA---------DFEVVKILTELL 564 (846)
Q Consensus 502 LRpDlT~~i----aR~~a~~-~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~---------DaEvI~l~~eil 564 (846)
|||+.|.++ +|.+.++ +.+|+|+||+|++||+| +|+.| |.|||+|.|+|+| +++++.++.+++
T Consensus 185 LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~ 264 (505)
T 1ati_A 185 LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWW 264 (505)
T ss_dssp ECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred ecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999999 7888887 88999999999999999 89989 9999999999987 567999999999
Q ss_pred HHcCCCceEEEEcchhhHHHHHHhcC-CChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChH
Q 003117 565 NELDIGDYEIKLNHRLLLDGMLEICG-VPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPL 643 (846)
Q Consensus 565 ~~lgl~~~~i~Inh~~ll~~il~~~g-i~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~ 643 (846)
+.||+..+.+.+.... .. .+. -....+ .+.-+....|.++ .|+ ..+++.
T Consensus 265 ~~LGl~~~~v~~~~~~--~~---~~~~~~~~~~-----d~E~~~p~~~~e~-------~g~------------~~~~d~- 314 (505)
T 1ati_A 265 QEMGLSRENLVPYQQP--PE---SSAHYAKATV-----DILYRFPHGSLEL-------EGI------------AQRTDF- 314 (505)
T ss_dssp HHTTCCGGGEEEEECC--TT---TSCTTCSEEE-----EEEEEETTEEEEE-------EEE------------EECTTH-
T ss_pred HHcCCCeEEEEECCCC--hH---hhhcccHHHH-----hHHhhcCCCCccc-------hhh------------hcccce-
Confidence 9999975554433210 00 000 000000 0000000000000 000 001110
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCC--ccccCCCcccCCCccchhhhhhCCCC
Q 003117 644 VLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGL--DYYTGVGSIAAGGRYDNLIGMFGTKQ 721 (846)
Q Consensus 644 ~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl--~YYtG~g~ia~GGRYD~Li~~fg~~~ 721 (846)
+ +. .-.......+. .+++|+....++ .|..+ .+|+||
T Consensus 315 ~----L~--------------------~~~~~~~~~~~--~~~~~~n~~~~~~~~y~d~----~g~~~y----------- 353 (505)
T 1ati_A 315 D----LG--------------------SHTKDQEALGI--TARVLRNEHSTQRLAYRDP----ETGKWF----------- 353 (505)
T ss_dssp H----HH--------------------HHCSSTTTTTC--CSCCCCCSCCCSCCCEECS----SSCCEE-----------
T ss_pred e----cc--------------------hhhccccccce--eeeecccccceeEEEEEcC----CCCeee-----------
Confidence 1 00 00000000011 112232222222 22221 145566
Q ss_pred cc-ceeecchHHHHHHHHHHhh--------h--hhhhcccc--CcceEEEEEcCC----cHHHHHHHHHHHHHCC-CeEE
Q 003117 722 VP-AVGVSLGIERVFTIMEQIQ--------K--ERNQIIRA--TETQVLVGLLGD----KLPLAAELVSELWNAK-VKAE 783 (846)
Q Consensus 722 ~p-AVGfsigleRL~~~L~~~~--------~--~~~~~~~~--~~~dVlV~~~~~----~~~~a~~la~~Lr~~G-I~ae 783 (846)
.| .+|+++|+||++.++.+++ . .....|++ +|++|+|+++++ ....+.++++.||++| ++|+
T Consensus 354 ~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~ 433 (505)
T 1ati_A 354 VPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 433 (505)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred cceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEE
Confidence 34 8999999999999988753 1 11112432 689999999975 4678999999999999 9999
Q ss_pred EEcCCCHHHHHHHHHhcCCCEEEEEcCcccc---------cCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 784 YMVHKKVMKLIDRARESKIPWMVIVGERELN---------EGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 784 l~~~~~l~~~~~~A~~~gi~~iviIg~~e~~---------~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+++..++++++++|++.|+||+|+||++|++ +|+|+||++.++++..|++++++++|++.++
T Consensus 434 ~D~~~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 434 YEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp ECCCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 9877789999999999999999999999999 9999999999999999999999999988764
No 34
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=292.91 Aligned_cols=322 Identities=14% Similarity=0.114 Sum_probs=232.3
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCC----eEeeCC
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGE----LCSLRY 504 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~----~l~LRp 504 (846)
..++|++||+|.++.+++.|++.+++.|+++||++|.||+|++.++|...+|+. .++||.|.|.+++ .++|||
T Consensus 48 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrP 127 (519)
T 4hvc_A 48 HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRP 127 (519)
T ss_dssp CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECS
T ss_pred cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCC
Confidence 367999999999999999999999999999999999999999999997656764 4789999987754 699999
Q ss_pred CChHHHHHHHHHc----CCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cHHH---HHHHHHHHHHc
Q 003117 505 DLTVPFARYVAMN----GLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DFEV---VKILTELLNEL 567 (846)
Q Consensus 505 DlT~~iaR~~a~~----~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------DaEv---I~l~~eil~~l 567 (846)
+.|++++++++.. +.+|+|+|++|+|||+| ++..| |.|||+|.|.+++ ++|+ +.++.++++.|
T Consensus 128 tse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~l 207 (519)
T 4hvc_A 128 TSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEEL 207 (519)
T ss_dssp SSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999863 46899999999999999 77778 9999999999984 5554 55677888886
Q ss_pred -CCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 568 -DIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 568 -gl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
++ ++.+...+..- .+.|-+ .+|. +..|..-.|
T Consensus 208 l~l-p~~~~~~t~~e-----~~~Ga~----------------~t~~-------------------iEa~~p~~g------ 240 (519)
T 4hvc_A 208 LAI-PVVKGRKTEKE-----KFAGGD----------------YTTT-------------------IEAFISASG------ 240 (519)
T ss_dssp SCC-CCEEEECCTTT-----SCTTSS----------------EEEE-------------------EEEEETTTT------
T ss_pred cCC-cceeeecCCcc-----ccCCch----------------hhee-------------------eeeeeccCC------
Confidence 77 34443322110 000100 0000 000000000
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceE-EEecCCCC--CCccccCCCcccCCCccchhhhhhCCCCcc
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKV-VFDLSLAR--GLDYYTGVGSIAAGGRYDNLIGMFGTKQVP 723 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i-~~Dlsl~r--gl~YYtG~g~ia~GGRYD~Li~~fg~~~~p 723 (846)
..+ .+ .++ +++..+.+ +..|-+-. ..|-++ .++
T Consensus 241 -------r~~-----------------------q~-gT~~~Lg~~~s~~~~i~y~d~~---~~g~~~----------~vh 276 (519)
T 4hvc_A 241 -------RAI-----------------------QG-GTSHHLGQNFSKMFEIVFEDPK---IPGEKQ----------FAY 276 (519)
T ss_dssp -------EEE-----------------------EE-EEEEEEETHHHHHHTCEEECTT---STTCEE----------ECE
T ss_pred -------CEE-----------------------ee-cccccccchhhhhcCcEEeccc---cCCCEE----------EEE
Confidence 000 00 011 12211111 11111100 001110 122
Q ss_pred ceeecchHHHHHHHHHHhhhhh-hhcccc--CcceEEEEEcCC-----------cHHHHHHHHHHHHHCCCeEEEEcC-C
Q 003117 724 AVGVSLGIERVFTIMEQIQKER-NQIIRA--TETQVLVGLLGD-----------KLPLAAELVSELWNAKVKAEYMVH-K 788 (846)
Q Consensus 724 AVGfsigleRL~~~L~~~~~~~-~~~~~~--~~~dVlV~~~~~-----------~~~~a~~la~~Lr~~GI~ael~~~-~ 788 (846)
-.+|+++ +|++.+|.+++.+. +..||+ +|+||+|++++. ....+.+|++.|+++||+|++|+. .
T Consensus 277 ~~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~ 355 (519)
T 4hvc_A 277 QNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDN 355 (519)
T ss_dssp EEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSS
T ss_pred EccccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 2356667 99999999865432 233543 789999999972 357789999999999999999984 3
Q ss_pred -CHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 789 -KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 789 -~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
++++++++|+..|+||+|+||++|+++|+|+||++.++++..|+++++++.|.+.+.
T Consensus 356 ~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~ 413 (519)
T 4hvc_A 356 YSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILE 413 (519)
T ss_dssp SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999877653
No 35
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=9.6e-30 Score=292.55 Aligned_cols=309 Identities=14% Similarity=0.164 Sum_probs=224.9
Q ss_pred ccCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC----CCeEeeCC
Q 003117 432 KLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG----GELCSLRY 504 (846)
Q Consensus 432 ~~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~----G~~l~LRp 504 (846)
+.++|+++|+|.++.+++.|++.+++.|+++||++|.||+|++.++|...+|+. .++||+|.|++ |+.++|||
T Consensus 42 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrP 121 (518)
T 3ial_A 42 YPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRP 121 (518)
T ss_dssp SSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECS
T ss_pred CCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECC
Confidence 688999999999999999999999999999999999999999999986556653 47899999876 68999999
Q ss_pred CChHHHHHHHHH----cCCCCceEEEeeceeecC-CCCCC--CccceEecccccc-------cHHHH---HHHHHHH-HH
Q 003117 505 DLTVPFARYVAM----NGLTSFKRHQIAKVYRRD-NPSKG--RYREFYQCDFDIA-------DFEVV---KILTELL-NE 566 (846)
Q Consensus 505 DlT~~iaR~~a~----~~~~plK~y~ig~VfR~e-~p~~G--r~REf~Q~g~ei~-------DaEvI---~l~~eil-~~ 566 (846)
+.|++++++++. ++.+|+|+||+|+|||+| +|+.| |.|||+|.|.++| +.|+. .++.+++ +.
T Consensus 122 t~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~ 201 (518)
T 3ial_A 122 TSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDE 201 (518)
T ss_dssp SSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999976 346899999999999999 67788 9999999999998 44544 4568888 88
Q ss_pred cCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHH
Q 003117 567 LDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLL 646 (846)
Q Consensus 567 lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l 646 (846)
||+. +.+.. . ..|++. .|- .++...++
T Consensus 202 LGlp-~~~~~--~-----------------------------~~~e~~-------~gA-------------~yt~~iE~- 228 (518)
T 3ial_A 202 LCFK-GQKLR--R-----------------------------VCWDRF-------PGA-------------DYSEVSDV- 228 (518)
T ss_dssp TCCC-CEEEE--E-----------------------------CGGGCC-------TTC-------------SEEEEEEE-
T ss_pred cCCc-EEeee--c-----------------------------Chhhcc-------CCC-------------ccceEEEE-
Confidence 8884 43221 0 001000 000 00000000
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEE-EecCCCCC--CccccCCCcccCCCccchhhhhhCCCCcc
Q 003117 647 SKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVV-FDLSLARG--LDYYTGVGSIAAGGRYDNLIGMFGTKQVP 723 (846)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~-~Dlsl~rg--l~YYtG~g~ia~GGRYD~Li~~fg~~~~p 723 (846)
+..+. +.+.+ .+++ +|..+.+. ..| .+ .. |.+..|
T Consensus 229 ---------~~pdg----------------r~ie~-gt~~~Lg~~~s~rf~i~y-~d-----~~----------g~~~~~ 266 (518)
T 3ial_A 229 ---------VMPCG----------------RVLQT-AGIHNLGQRFSSTFDILY-AN-----KA----------NESVHP 266 (518)
T ss_dssp ---------ECTTS----------------CEEEE-EEEEEEETHHHHHTTCCE-EC-----TT----------CCEECC
T ss_pred ---------EcCCC----------------CEEEE-eceecccchhhhhcCcEE-EC-----CC----------CCEeee
Confidence 00000 00000 0111 22111111 111 11 00 111223
Q ss_pred cee-ecchHHHHHHHHHHhhhh-hhhcccc--CcceEEEEEcCC-----------cHHHHHHHHHHHHHC-CCeEEEEcC
Q 003117 724 AVG-VSLGIERVFTIMEQIQKE-RNQIIRA--TETQVLVGLLGD-----------KLPLAAELVSELWNA-KVKAEYMVH 787 (846)
Q Consensus 724 AVG-fsigleRL~~~L~~~~~~-~~~~~~~--~~~dVlV~~~~~-----------~~~~a~~la~~Lr~~-GI~ael~~~ 787 (846)
..+ ++++ +|++.+|.+++.+ .+..||+ +|+||.|+|++. ....+.+|++.|+++ ||+|++|+.
T Consensus 267 h~~~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr 345 (518)
T 3ial_A 267 YLTCAGIS-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDD 345 (518)
T ss_dssp EEEEEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred EEeccchH-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECC
Confidence 322 3334 9999998887543 2334554 799999999872 346788999999999 999999974
Q ss_pred --CCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCc--eeeechHHH
Q 003117 788 --KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQ--EEVISRSNF 836 (846)
Q Consensus 788 --~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~--e~~v~~~el 836 (846)
.++++++++|+..|+|++|+||++++++|+|+||++.+++ +..|+++++
T Consensus 346 ~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 346 FSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHH
Confidence 6899999999999999999999999999999999999999 999999999
No 36
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.88 E-value=3.6e-23 Score=236.09 Aligned_cols=322 Identities=14% Similarity=0.071 Sum_probs=205.5
Q ss_pred Cccc-ccChhHHHHHHHHHHHHHHH-H-HHCCCeeecCCccccccccccc-cCC---C---cC----------ceEEEE-
Q 003117 435 KGTR-DFAKEQMAVREKAFSIITEV-F-KRHGAMALDTPVFEMRETLMGK-YGE---D---SK----------LIYDLA- 493 (846)
Q Consensus 435 ~G~~-D~lp~~~~~~~~i~~~l~~v-f-~~~G~~eI~tP~le~~e~~~~~-~g~---~---~~----------~~y~~~- 493 (846)
+|+. ||+|.++.++++|++.+++. | .+.||.+|.||++.|.++|... .|+ . .+ +|+.++
T Consensus 51 ~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~ 130 (454)
T 1g5h_A 51 SGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLE 130 (454)
T ss_dssp HCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHH
T ss_pred CcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHH
Confidence 3767 99999999999999988887 4 6899999999999999877542 122 1 11 122221
Q ss_pred cCCCCeEeeCCCChHHHHHHHHH----c-CCCCceEEEeeceee---cC-CCCCC--CccceEecccccc-c---H----
Q 003117 494 DQGGELCSLRYDLTVPFARYVAM----N-GLTSFKRHQIAKVYR---RD-NPSKG--RYREFYQCDFDIA-D---F---- 554 (846)
Q Consensus 494 D~~G~~l~LRpDlT~~iaR~~a~----~-~~~plK~y~ig~VfR---~e-~p~~G--r~REf~Q~g~ei~-D---a---- 554 (846)
+..++.+.|||+.+..+...+.+ + +.+|++++++|++|| +| .|..| |.|||+|.+.++| + +
T Consensus 131 ~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~ 210 (454)
T 1g5h_A 131 NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWL 210 (454)
T ss_dssp HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHH
T ss_pred hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHH
Confidence 11235689999887777654443 3 479999999999999 58 35444 9999999999998 1 1
Q ss_pred -HHHHHHHHHHHHcCCCceEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHH
Q 003117 555 -EVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIG 633 (846)
Q Consensus 555 -EvI~l~~eil~~lgl~~~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~ 633 (846)
.++..+.++++.||+....++.... .-+ + .....+.. ..++
T Consensus 211 ~~~~~~~~~~~~~lgi~~~~~r~~~~----------~~~-~-------a~~~~~ie------------~~~p-------- 252 (454)
T 1g5h_A 211 DFWLRHRLLWWRKFAMSPSNFSSADC----------QDE-L-------GRKGSKLY------------YSFP-------- 252 (454)
T ss_dssp HHHHHHHHHHHHTTCSSGGGEEEEEE----------ECT-T-------SCEEEEEE------------EEET--------
T ss_pred HHHHHHHHHHHHHcCCCceeEEecCC----------HHH-H-------HhcCCCcE------------EecC--------
Confidence 1455666777778875333332110 000 0 00000000 0000
Q ss_pred HHHHhcCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccCCCcccCCCccchh
Q 003117 634 TFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNL 713 (846)
Q Consensus 634 ~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~L 713 (846)
.|.- + +. .. .+... .+|.+. .. . .+ || +.|.++
T Consensus 253 -----~g~~-e----~~----g~-~~~td----~~l~~~----~~--~-s~--~~------l~y~d~------------- 285 (454)
T 1g5h_A 253 -----WGKE-P----IE----TL-WNLGD----QELLHT----YP--G-NV--ST------IQGRDG------------- 285 (454)
T ss_dssp -----TEEE-E----EE----EE-EEEES----HHHHHH----ST--T-CG--GG------SCEEET-------------
T ss_pred -----CCce-E----EE----Ee-cCCCH----HHHHhc----cC--C-ce--ee------EEEECC-------------
Confidence 0000 0 00 00 00000 011110 00 0 00 11 222111
Q ss_pred hhhhCCCCccce-eecchHHHHHHHHHHhhhhh--------------hhcccc--CcceEEEE-EcC--C-cHHHHHHHH
Q 003117 714 IGMFGTKQVPAV-GVSLGIERVFTIMEQIQKER--------------NQIIRA--TETQVLVG-LLG--D-KLPLAAELV 772 (846)
Q Consensus 714 i~~fg~~~~pAV-GfsigleRL~~~L~~~~~~~--------------~~~~~~--~~~dVlV~-~~~--~-~~~~a~~la 772 (846)
+.+.+|.| ..|+|+||++.++.+.+... ...|++ +|+||+|+ +.+ + ....+.+++
T Consensus 286 ----~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~ 361 (454)
T 1g5h_A 286 ----RKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLL 361 (454)
T ss_dssp ----TEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHH
T ss_pred ----CCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHH
Confidence 11235644 68999999975554433211 124554 78999999 765 3 568899999
Q ss_pred HHHHHCCCeEE--EEc--CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 773 SELWNAKVKAE--YMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 773 ~~Lr~~GI~ae--l~~--~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
++||++||+|+ +++ +.++++++++|++.|+||+|+||++|+++|+|+||++.++++..|++++++++|++.+.
T Consensus 362 ~~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~ 438 (454)
T 1g5h_A 362 NELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLA 438 (454)
T ss_dssp HHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 99999999997 665 45799999999999999999999999999999999999999999999999999987653
No 37
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=212.96 Aligned_cols=306 Identities=14% Similarity=0.114 Sum_probs=197.4
Q ss_pred Cccc-ccChhHHHHHHHHHHHHHHHHHH-CC-CeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHH
Q 003117 435 KGTR-DFAKEQMAVREKAFSIITEVFKR-HG-AMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFA 511 (846)
Q Consensus 435 ~G~~-D~lp~~~~~~~~i~~~l~~vf~~-~G-~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~ia 511 (846)
.|.+ ||.|.++.+++.|++.+++-|.. .| +.+|+||..++ |. .+|++.+ |+ +.|||+.+..+.
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~---~~-~SGH~d~--~~--------~~LRPeTaqg~~ 158 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP---GP-LLPGDSA--FR--------GGLRENLLHGAL 158 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC---SC-CCSSCSC--CT--------TB-CSCSHHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc---cc-cCcchhh--hc--------ceECCCCChhHH
Confidence 4555 99999999999999977777753 66 56699999544 43 3777632 32 889999887776
Q ss_pred HHHHH----c-CCCCceEEEeeceeecCC----CCCC--CccceEecccccc------c---HHHHHHHHHHHHHcCCCc
Q 003117 512 RYVAM----N-GLTSFKRHQIAKVYRRDN----PSKG--RYREFYQCDFDIA------D---FEVVKILTELLNELDIGD 571 (846)
Q Consensus 512 R~~a~----~-~~~plK~y~ig~VfR~e~----p~~G--r~REf~Q~g~ei~------D---aEvI~l~~eil~~lgl~~ 571 (846)
-.+.+ + +.+|+|+.++|++||+|. +..| |.|||.|.+.++| + .+++....++++.||+.+
T Consensus 159 ~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~ 238 (459)
T 3ikl_A 159 EHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSP 238 (459)
T ss_dssp HHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSG
T ss_pred HHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 55432 2 378999999999999993 4444 9999999999998 1 224556677788888753
Q ss_pred eEEEEcchhhHHHHHHhcCCChHHHHHHHHHhhhhChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 003117 572 YEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQ 651 (846)
Q Consensus 572 ~~i~Inh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~eL~~~~gl~~~~~~~L~~l~~~~g~~~~~l~~l~~ 651 (846)
..+++.... +++ +.+..|-..| ++ .|.-
T Consensus 239 ~~~r~~~~~-----------~ee-------A~~~~DiE~~------------~p-------------~G~~--------- 266 (459)
T 3ikl_A 239 SNFSSSDCQ-----------DEE-------GRKGNKLYYN------------FP-------------WGKE--------- 266 (459)
T ss_dssp GGEEEEEEC-----------CSS-------SSCEEEEEEE------------CS-------------SCEE---------
T ss_pred hhEEEeecC-----------chH-------HHhhcCeEEE------------cC-------------CceE---------
Confidence 223222210 000 0000010000 00 0100
Q ss_pred hccccc--ccchHHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCccccCCCcccCCCccchhhhhhCCCCcc-ceeec
Q 003117 652 EGSLFL--ENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVP-AVGVS 728 (846)
Q Consensus 652 ~~~~~~--~~~~~~~al~~L~~l~~~l~~~g~~~~i~~Dlsl~rgl~YYtG~g~ia~GGRYD~Li~~fg~~~~p-AVGfs 728 (846)
.+. .+.... +|.+.. + ..+.+| ++ ..| +.+.+| .+..+
T Consensus 267 ---E~~g~sn~tDf----qL~~~~---~--------------~~~~~~-~~-----~dg---------~~k~~P~vi~~s 307 (459)
T 3ikl_A 267 ---LIETLWNLGDH----ELLHMY---P--------------GNVSKL-HG-----RDG---------RKNVVPCVLSVN 307 (459)
T ss_dssp ---EEEEEEEEETH----HHHHHS---C--------------SCSSSS-CC-----BSS---------SCBCCCEEEEEE
T ss_pred ---EEeeeeccchh----hhhccc---c--------------ccCcee-Ec-----cCC---------CeeeeeEEEEec
Confidence 000 000000 011100 0 001111 11 001 112245 55689
Q ss_pred chHHHHHHHHHHhhhh-hh-------------hcccc--CcceEEEEEcC---C-cHHHHHHHHHHHHHCCCeEE--EEc
Q 003117 729 LGIERVFTIMEQIQKE-RN-------------QIIRA--TETQVLVGLLG---D-KLPLAAELVSELWNAKVKAE--YMV 786 (846)
Q Consensus 729 igleRL~~~L~~~~~~-~~-------------~~~~~--~~~dVlV~~~~---~-~~~~a~~la~~Lr~~GI~ae--l~~ 786 (846)
+|+||++.++.++..+ .. ..||+ +|++|.|+... + ....+.+|+++|+++||+|+ ++.
T Consensus 308 ~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Dd 387 (459)
T 3ikl_A 308 GDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLE 387 (459)
T ss_dssp EEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGS
T ss_pred ccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecC
Confidence 9999987666654221 11 34554 79999998432 3 56899999999999999999 555
Q ss_pred --CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCCCceeeechHHHHHHHHHHhh
Q 003117 787 --HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 845 (846)
Q Consensus 787 --~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~ 845 (846)
+.++++++++|++.|+||+|+||++|+++|+|+||++.++++..|+++|++++|++.+.
T Consensus 388 r~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~ 448 (459)
T 3ikl_A 388 TMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS 448 (459)
T ss_dssp SSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999999999988764
No 38
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.66 E-value=1.1e-16 Score=181.27 Aligned_cols=142 Identities=17% Similarity=0.192 Sum_probs=122.6
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
..+|++||+|.++.+++.+++.+++.|.+|||.+|.||.|++.++|.. +|+. .++||++. ++.++|||+.|+|
T Consensus 160 ~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---~~~l~LrPt~e~~ 235 (425)
T 2dq3_A 160 SGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCE---RDNLYLIPTAEVP 235 (425)
T ss_dssp HCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCT---TTCCEECSSTHHH
T ss_pred cCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEec---CCeEEEcCCCcHH
Confidence 358999999999999999999999999999999999999999999865 5753 47899884 4679999999999
Q ss_pred HHHHHHHc----CCCCceEEEeeceeecCCCCC-----C--CccceEecccccc---------cHHHHHHHHHHHHHcCC
Q 003117 510 FARYVAMN----GLTSFKRHQIAKVYRRDNPSK-----G--RYREFYQCDFDIA---------DFEVVKILTELLNELDI 569 (846)
Q Consensus 510 iaR~~a~~----~~~plK~y~ig~VfR~e~p~~-----G--r~REf~Q~g~ei~---------DaEvI~l~~eil~~lgl 569 (846)
++++++.. ..+|+|+||+|+|||+|.++. | |.|||+|.++++| ..|++.++.++|+.||+
T Consensus 236 i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL 315 (425)
T 2dq3_A 236 LTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGL 315 (425)
T ss_dssp HHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999863 468999999999999998543 3 9999999999988 26889999999999999
Q ss_pred CceE-EEEcch
Q 003117 570 GDYE-IKLNHR 579 (846)
Q Consensus 570 ~~~~-i~Inh~ 579 (846)
. |. +.+...
T Consensus 316 ~-~rvv~l~~g 325 (425)
T 2dq3_A 316 P-YRVVELCTG 325 (425)
T ss_dssp C-EEEEECCTT
T ss_pred c-eEEEEecCC
Confidence 6 65 444433
No 39
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.62 E-value=8.6e-16 Score=174.86 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=124.5
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
...|+++|+|.++.+++.+++.+++.++++||++|.||.|++.++|.. +|+. .++||++.| +.++|||+.|++
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d---~~l~LrPt~e~~ 256 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDVIYKVED---EDLYLIPTAEHP 256 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHTCCBBTT---SSCEECSSTHHH
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHhhCeecC---CcEEEcCcCcHH
Confidence 347999999999999999999999999999999999999999999876 5775 368998854 578999999999
Q ss_pred HHHHHHHc----CCCCceEEEeeceeecCCCCCC-------CccceEecccccc----cH-----HHHHHHHHHHHHcCC
Q 003117 510 FARYVAMN----GLTSFKRHQIAKVYRRDNPSKG-------RYREFYQCDFDIA----DF-----EVVKILTELLNELDI 569 (846)
Q Consensus 510 iaR~~a~~----~~~plK~y~ig~VfR~e~p~~G-------r~REf~Q~g~ei~----Da-----EvI~l~~eil~~lgl 569 (846)
+++++... +.+|+|+|++|+|||+|.++.| |.|||+|.+.++| ++ |++.++.++++.||+
T Consensus 257 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 257 LAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp HHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999863 5789999999999999987544 9999999999988 44 789999999999999
Q ss_pred CceEEEEcchh
Q 003117 570 GDYEIKLNHRL 580 (846)
Q Consensus 570 ~~~~i~Inh~~ 580 (846)
. |.+....++
T Consensus 337 ~-yrv~~~~~g 346 (455)
T 2dq0_A 337 P-YRVVNICTG 346 (455)
T ss_dssp C-EEEEECCGG
T ss_pred c-eEEEECCCc
Confidence 4 776665443
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.59 E-value=1.6e-15 Score=171.27 Aligned_cols=137 Identities=13% Similarity=0.237 Sum_probs=120.4
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVP 509 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~ 509 (846)
..+|+++|+|.++.+++.|++.+++.+.++||++|.||.|++.++|.. +|+. .++||++.| +.++|+|+.|++
T Consensus 154 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d---~~l~L~Pt~e~~ 229 (421)
T 1ses_A 154 SGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVV 229 (421)
T ss_dssp HCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGSCBBTT---SSEEECSSTHHH
T ss_pred cCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHh-cCCCCcCchhcEEEcC---CeEEEeecCcHH
Confidence 458999999999999999999999999999999999999999999975 6764 478999864 679999999999
Q ss_pred HHHHHHHc----CCCCceEEEeeceeecC-----CCCCC--CccceEecccccc--c---------HHHHHHHHHHHHHc
Q 003117 510 FARYVAMN----GLTSFKRHQIAKVYRRD-----NPSKG--RYREFYQCDFDIA--D---------FEVVKILTELLNEL 567 (846)
Q Consensus 510 iaR~~a~~----~~~plK~y~ig~VfR~e-----~p~~G--r~REf~Q~g~ei~--D---------aEvI~l~~eil~~l 567 (846)
+++++... +.+|+|+|++|+|||+| +|..| |.|||+|++.++| . .|++.++.++++.|
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~L 309 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL 309 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99998753 46899999999999999 67778 9999999998887 2 26788999999999
Q ss_pred CCCceEE
Q 003117 568 DIGDYEI 574 (846)
Q Consensus 568 gl~~~~i 574 (846)
|+. |.+
T Consensus 310 GL~-~rv 315 (421)
T 1ses_A 310 ELP-YRL 315 (421)
T ss_dssp TCC-EEE
T ss_pred CCc-eEE
Confidence 994 554
No 41
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.52 E-value=1.8e-14 Score=165.59 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=125.7
Q ss_pred CCCCcchHHHHHHHHHHhhccccccCcc-cCCcccccChhHHHHHHHHHHHHHH-HHHHCCCeeecCCcccccccccccc
Q 003117 405 DPRDPEFDGLLTKIREIVESNESRRLPK-LPKGTRDFAKEQMAVREKAFSIITE-VFKRHGAMALDTPVFEMRETLMGKY 482 (846)
Q Consensus 405 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~G~~D~lp~~~~~~~~i~~~l~~-vf~~~G~~eI~tP~le~~e~~~~~~ 482 (846)
+|.+-+|.+++.+ ++++.+ ..+|++||+|.++.+++.|++.+++ ++.++||++|.||.|++.++|.. +
T Consensus 199 ~~f~~~~~~ll~r---------aG~i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-S 268 (522)
T 2cja_A 199 HPFKEDPTQAMMK---------EGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-S 268 (522)
T ss_dssp CCCCSCHHHHHHH---------TTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-H
T ss_pred CCcchHHHHHHHH---------CCCeeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-c
Confidence 4455555555432 244445 7799999999999999999999996 58999999999999999999976 6
Q ss_pred CCC---cCceEEEE-----c-------------------------CCCCeEeeCCCChHHHHHHHHHc----CCCCceEE
Q 003117 483 GED---SKLIYDLA-----D-------------------------QGGELCSLRYDLTVPFARYVAMN----GLTSFKRH 525 (846)
Q Consensus 483 g~~---~~~~y~~~-----D-------------------------~~G~~l~LRpDlT~~iaR~~a~~----~~~plK~y 525 (846)
|+. .++||++. | ++++.++|||+.|+++.+++... +.+|+|+|
T Consensus 269 Gh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~ 348 (522)
T 2cja_A 269 GHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVF 348 (522)
T ss_dssp TGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEE
T ss_pred CCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEE
Confidence 754 47899995 2 14688999999999999988743 45899999
Q ss_pred E-eeceeecCCCC--C--CCccceEecccccc------c---HHHH-HHHHHHHHHcCCC
Q 003117 526 Q-IAKVYRRDNPS--K--GRYREFYQCDFDIA------D---FEVV-KILTELLNELDIG 570 (846)
Q Consensus 526 ~-ig~VfR~e~p~--~--Gr~REf~Q~g~ei~------D---aEvI-~l~~eil~~lgl~ 570 (846)
+ +|++||+| |+ . +|.|||+|.++++| + .+++ ....++++.||+.
T Consensus 349 q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 349 DRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp ECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9 99999999 76 4 69999999999998 2 2346 6667778999996
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.48 E-value=2e-13 Score=147.44 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=96.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccc-cccccc-cCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcC
Q 003117 441 AKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMR-ETLMGK-YGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG 518 (846)
Q Consensus 441 lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~-e~~~~~-~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~ 518 (846)
.....+++.++.+.++++|.++||.||+||+|++. +++... .++. .++|.+. .-|+.+.||.......-+.++.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~-~~~~~~~L~~Spe~~~~~l~~~-- 86 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE-IYGVKMRLTHSMILHKQLAIAM-- 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE-ETTEEEEECSCSHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE-cCCCCEEeccChHHHHHHHhhc--
Confidence 44567899999999999999999999999999998 777654 4444 6678753 3355778875544444444432
Q ss_pred CCCceEEEeeceeecCCCCC--CCcc-ceEecccccc---cHHHHHHHHHHHHHcC
Q 003117 519 LTSFKRHQIAKVYRRDNPSK--GRYR-EFYQCDFDIA---DFEVVKILTELLNELD 568 (846)
Q Consensus 519 ~~plK~y~ig~VfR~e~p~~--Gr~R-Ef~Q~g~ei~---DaEvI~l~~eil~~lg 568 (846)
.+.|+||+|+|||+|+|+. +|.+ ||+|+++|.+ +.|++.++.++++.+.
T Consensus 87 -g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 -GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLF 141 (294)
T ss_dssp -TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred -CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 2679999999999999764 6888 9999999998 7889998888887763
No 43
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.45 E-value=9.4e-14 Score=149.44 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcC-ceEEEEcCCCCeEeeCCCChHHHHHHHHHc---CCCCce
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSK-LIYDLADQGGELCSLRYDLTVPFARYVAMN---GLTSFK 523 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~-~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~---~~~plK 523 (846)
++++++.++++|..+||.||.||.|++.+.|.. .|...+ ++|++.++-++.++|||++++++.+.+..+ +..|+|
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plr 151 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIR 151 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEE
Confidence 477888899999999999999999999887754 454322 466554443456799999999988766543 567999
Q ss_pred EEEeeceeecCCCCCCCccceEecccccc-------cHHHHHHHHHHHHHcCCCceEEE
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIA-------DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-------DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
+|++|+|||+|.++.+|.+||+|++++++ ++|++.++.++++.||+++|.+.
T Consensus 152 lfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 152 IFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp EEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred EEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCCcEEe
Confidence 99999999999988899999999999887 57899999999999998666654
No 44
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=153.36 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=119.7
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcC--------CCCeEee
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQ--------GGELCSL 502 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~--------~G~~l~L 502 (846)
..|++.|.|.++++++.+.+.+++.+.++||.+|.||.|.+.++|.. +|++ .++||++.|. .++.++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeE
Confidence 47899999999999999999999999999999999999999999864 6765 4789999875 3678999
Q ss_pred CCCChHHHHHHHHH----cCCCCceEEEeeceeecCCCC-----CC--CccceEecccccc----c-------HHHHHHH
Q 003117 503 RYDLTVPFARYVAM----NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIA----D-------FEVVKIL 560 (846)
Q Consensus 503 RpDlT~~iaR~~a~----~~~~plK~y~ig~VfR~e~p~-----~G--r~REf~Q~g~ei~----D-------aEvI~l~ 560 (846)
+|..++|++.++.. ++.+|+|+|++++|||+|.+. .| |.|||.|.+..+| + .+++..+
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 99999999988764 367899999999999999753 23 8899999999988 3 3578888
Q ss_pred HHHHHHcCCCceEEEEcch
Q 003117 561 TELLNELDIGDYEIKLNHR 579 (846)
Q Consensus 561 ~eil~~lgl~~~~i~Inh~ 579 (846)
.++|+.||+ +|.+..-.+
T Consensus 349 e~il~~LGL-pyrvv~l~t 366 (522)
T 3vbb_A 349 EEFYQSLGI-PYHIVNIVS 366 (522)
T ss_dssp HHHHHHTTC-CEEEEECCG
T ss_pred HHHHHHcCC-ceEEEEcCC
Confidence 999999999 465554333
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.37 E-value=1.4e-12 Score=149.44 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=120.6
Q ss_pred cCCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cC-ceEEEEcCCCCeEeeCCCChH
Q 003117 433 LPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SK-LIYDLADQGGELCSLRYDLTV 508 (846)
Q Consensus 433 ~p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~-~~y~~~D~~G~~l~LRpDlT~ 508 (846)
...|++.|.|.++.+++.+++.+++.+.++||++|.||.|.+.++|.. +|++ .+ +||++.|.+++.++|+|..++
T Consensus 207 ~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~ 285 (501)
T 1wle_A 207 SGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEG-CGMTPNAKPSQIYNIDPSRFEDLNLAGTAEV 285 (501)
T ss_dssp TCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HTCCSSSSSCSSCBBCTTTSSSCEECSSHHH
T ss_pred ccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHh-hcCCCccCccccEEEecCCCCeEEECCcCcH
Confidence 347899999999999999999999999999999999999999998865 6654 34 899998777788999999999
Q ss_pred HHHHHHHH----cCCCCceEEEeeceeecCCC----CCC--CccceEecccccc---c--------HHHHHHHHHHHHHc
Q 003117 509 PFARYVAM----NGLTSFKRHQIAKVYRRDNP----SKG--RYREFYQCDFDIA---D--------FEVVKILTELLNEL 567 (846)
Q Consensus 509 ~iaR~~a~----~~~~plK~y~ig~VfR~e~p----~~G--r~REf~Q~g~ei~---D--------aEvI~l~~eil~~l 567 (846)
+++.++.. ++.+|+|+|++++|||+|.. ..| |.|||.|.+.++| + .+++..+.++|+.|
T Consensus 286 ~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~L 365 (501)
T 1wle_A 286 GLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTEL 365 (501)
T ss_dssp HHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999885 35789999999999999954 334 8899999999998 2 23677888999999
Q ss_pred CCCceEEE
Q 003117 568 DIGDYEIK 575 (846)
Q Consensus 568 gl~~~~i~ 575 (846)
|+. |.+.
T Consensus 366 gLp-yrvv 372 (501)
T 1wle_A 366 GLH-FRVL 372 (501)
T ss_dssp TCC-EEEE
T ss_pred CCc-EEEE
Confidence 994 6653
No 46
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.32 E-value=3.8e-12 Score=144.62 Aligned_cols=143 Identities=13% Similarity=0.195 Sum_probs=120.2
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHH
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
..|++.|.|.++++.+.+.+.+++.+.++||++|.||.|.+.++|.. +|++ .++||++.|. ++.++|+|...+|+
T Consensus 197 Gsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~mf~v~~~-~~~~~L~PTaE~~l 274 (484)
T 3lss_A 197 GGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGE-VAQLSQFDEELYQVSGD-GDKKYLIATSEMPI 274 (484)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHHHTCCEEESS-SSCEEECSSTHHHH
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHh-cCCcccccccceEeecC-CcceEEeccCcHHH
Confidence 46788999999999999999999999999999999999999999865 7765 3689999764 67899999999999
Q ss_pred HHHHHH----cCCCCceEEEeeceeecCC-CC----CC--CccceEecccccc----c-------HHHHHHHHHHHHHcC
Q 003117 511 ARYVAM----NGLTSFKRHQIAKVYRRDN-PS----KG--RYREFYQCDFDIA----D-------FEVVKILTELLNELD 568 (846)
Q Consensus 511 aR~~a~----~~~~plK~y~ig~VfR~e~-p~----~G--r~REf~Q~g~ei~----D-------aEvI~l~~eil~~lg 568 (846)
+-++.. ++.+|+|+|++++|||+|. +. .| |.|||.|.+..+| + .+++..+.++|+.||
T Consensus 275 ~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LG 354 (484)
T 3lss_A 275 AAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLG 354 (484)
T ss_dssp HHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence 887764 3678999999999999996 32 23 8999999999988 3 346778899999999
Q ss_pred CCceEEEEcch
Q 003117 569 IGDYEIKLNHR 579 (846)
Q Consensus 569 l~~~~i~Inh~ 579 (846)
+. |.+..-.+
T Consensus 355 Lp-yrvv~l~t 364 (484)
T 3lss_A 355 LP-YRVVNICS 364 (484)
T ss_dssp CC-EEEEECCT
T ss_pred Cc-EEEEEcCC
Confidence 94 66544333
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.28 E-value=9.7e-12 Score=143.92 Aligned_cols=141 Identities=13% Similarity=0.209 Sum_probs=118.9
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHH
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
..|++.|.|.++++.+.+.+.+++.+.++||+||.||.|.+.++|.. +|++ .++||++.| +.++|+|...+++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 46899999999999999999999999999999999999999999865 7765 368999865 5799999999999
Q ss_pred HHHHHH----cCCCCceEEEeeceeecCCC-----CCC--CccceEecccccc---c--------HHHHHHHHHHHHHcC
Q 003117 511 ARYVAM----NGLTSFKRHQIAKVYRRDNP-----SKG--RYREFYQCDFDIA---D--------FEVVKILTELLNELD 568 (846)
Q Consensus 511 aR~~a~----~~~~plK~y~ig~VfR~e~p-----~~G--r~REf~Q~g~ei~---D--------aEvI~l~~eil~~lg 568 (846)
+-++.. ++.+|+|+|++|++||+|.. ..| |.|||+|.+.++| | .+++..+.++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 988764 35789999999999999963 233 8999999999998 4 346778889999999
Q ss_pred CCceEEEEcch
Q 003117 569 IGDYEIKLNHR 579 (846)
Q Consensus 569 l~~~~i~Inh~ 579 (846)
+. |.+..-.+
T Consensus 420 Lp-yrvv~~~t 429 (536)
T 3err_A 420 LP-YRLVEVAT 429 (536)
T ss_dssp CC-EEEEECCT
T ss_pred Cc-EEEEEcCC
Confidence 94 65544333
No 48
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.28 E-value=9.4e-12 Score=141.30 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=119.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCCCCeEeeCCCChHHH
Q 003117 434 PKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPF 510 (846)
Q Consensus 434 p~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~G~~l~LRpDlT~~i 510 (846)
..|++.|.|.++++++.+.+.+++.+.++||++|.||.|.+.++|.. +|++ .++||++.|. ++.+.|.|.+..|+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~l~~f~eemf~v~~~-~~~~~LipTaE~pl 251 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK-TAQLSQFDEELYKVIDG-EDEKYLIATSEQPI 251 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHTTTCCEEEET-TEEEEECSSTHHHH
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCCccccccceEEEeCC-CCeEEEeccccHHH
Confidence 46899999999999999999999999999999999999999998865 6764 4689999875 66899999999999
Q ss_pred HHHHHH------cCCCCceEEEeeceeecCCCC-----CC--CccceEecccccc----c-----HHHHHHHHHHHHHcC
Q 003117 511 ARYVAM------NGLTSFKRHQIAKVYRRDNPS-----KG--RYREFYQCDFDIA----D-----FEVVKILTELLNELD 568 (846)
Q Consensus 511 aR~~a~------~~~~plK~y~ig~VfR~e~p~-----~G--r~REf~Q~g~ei~----D-----aEvI~l~~eil~~lg 568 (846)
+.++.. ++.+|+|+|++++|||+|... .| |.|||.|.+.++| + .+++..+.++++.||
T Consensus 252 ~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~Lg 331 (485)
T 3qne_A 252 SAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLG 331 (485)
T ss_dssp HHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 988764 345799999999999999643 33 8999999999998 1 357788899999999
Q ss_pred CCceEEEEcch
Q 003117 569 IGDYEIKLNHR 579 (846)
Q Consensus 569 l~~~~i~Inh~ 579 (846)
+. |.+..-.+
T Consensus 332 Lp-yrvv~~~t 341 (485)
T 3qne_A 332 LP-YRVVGIVS 341 (485)
T ss_dssp CC-EEEEECCG
T ss_pred Cc-EEEEEcCC
Confidence 94 65544333
No 49
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.25 E-value=2.6e-11 Score=130.84 Aligned_cols=122 Identities=28% Similarity=0.344 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC-----cCceEEEEcCCCCeEeeCCCChHHHHHHHHHc---CC
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMN---GL 519 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~-----~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~---~~ 519 (846)
++++.+.++++|..+||.||.||+|+..+.+.. .+.. .+.+|.| | +..+|||++++++.+.++++ ..
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~-~---~~~~LR~slsp~L~~~l~~n~~~~~ 153 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRV-D---KNFCLRPMLTPNLYNYLRKLDRALP 153 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEE-T---TTEEECSCSHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheee-C---CCeeEcccChHHHHHHHHHhhccCC
Confidence 578888899999999999999999999876532 3211 2457766 3 57899999999999998875 36
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc-----cHHHHHHHHHHHHHcCCCceEEE
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFEVVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lgl~~~~i~ 575 (846)
.|.|+|++|+|||+|.++.+|++||+|++++++ ..|+..++.++++.+|+ +|.+.
T Consensus 154 ~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl-~~~~~ 213 (290)
T 3qtc_A 154 DPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGI-DFKIV 213 (290)
T ss_dssp SSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred CCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCC-CcEEe
Confidence 789999999999999877789999999999987 57889999999999998 56554
No 50
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.16 E-value=9.9e-11 Score=109.75 Aligned_cols=94 Identities=4% Similarity=0.115 Sum_probs=86.9
Q ss_pred cCcceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEc---CCCHHHHHHHHHhcCCCEEEEEcCcccccCeEEEEECCC-
Q 003117 751 ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMV---HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT- 825 (846)
Q Consensus 751 ~~~~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~---~~~l~~~~~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~- 825 (846)
..|.||.|+++++ ...+|.++.+.|++.||+|+++. +++++++++.|...++||+++||++|.++++|.||.+..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 3678999999997 78999999999999999999987 468999999999999999999999999999999999988
Q ss_pred -CceeeechHHHHHHHHHHh
Q 003117 826 -TQEEVISRSNFVEEIQRRL 844 (846)
Q Consensus 826 -~~e~~v~~~elv~~L~~~l 844 (846)
++...++++|++..|..++
T Consensus 86 ~~e~~~m~lde~i~~l~~~~ 105 (130)
T 1v95_A 86 PQEHRNMPQADAMVLVARNY 105 (130)
T ss_dssp CCEEEEEEHHHHHHHHHHHH
T ss_pred CCccCccCHHHHHHHHHHHH
Confidence 7888999999999987665
No 51
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.95 E-value=1.5e-09 Score=123.08 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeC--CCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 519 (846)
..-..++.++.+.++++|..+||.||+||+|+... ++...++|.+ +..|+.+.|| |+++... ++.
T Consensus 132 ~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e~~~~~f~~-~~~~~~~~Lr~Spel~~~~---~~~--- 198 (434)
T 1x54_A 132 SAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VEGGATLFKL-KYFDKYAYLSQSAQLYLEA---AIF--- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SSCGGGCCEE-EETTEEEEECSCSHHHHHH---HHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CCCCceeEEE-eecCCcEEeccChHHHHHH---Hhc---
Confidence 34568889999999999999999999999998642 2333567877 5677889999 7776432 222
Q ss_pred CCceEEEeeceeecCCCCCCCcc-ceEecccccc---cHHHHHHHHHHHHHc
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIA---DFEVVKILTELLNEL 567 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~R-Ef~Q~g~ei~---DaEvI~l~~eil~~l 567 (846)
.+.|+|++|+|||+|.++.+|.+ ||+|+++|.+ ..|++.++.++++.+
T Consensus 199 g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 199 GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYM 250 (434)
T ss_dssp HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred CccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHH
Confidence 26799999999999999888887 9999999998 788888888877664
No 52
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.89 E-value=5.2e-09 Score=118.36 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGLT 520 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LR--pDlT~~iaR~~a~~~~~ 520 (846)
.-.+++.++.+.++++|..+||.||+||+|+... ++...++|.+ +..|+.+.|| |+++ .-| ++..
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~e~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g--- 198 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------TEGGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV--- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------SSTTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------CCCCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC---
Confidence 4567888999999999999999999999998642 2333567877 5667889999 6554 445 4432
Q ss_pred CceEEEeeceeecCCCCCCCcc-ceEecccccc---cHHHHHHHHHHHHHc
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIA---DFEVVKILTELLNEL 567 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~R-Ef~Q~g~ei~---DaEvI~l~~eil~~l 567 (846)
+.|+|++|+|||+|.++.+|.+ ||+|+++|.+ ..|++.++.++++.+
T Consensus 199 ~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 199 VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNI 249 (429)
T ss_dssp HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999888887 9999999997 677888777777654
No 53
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.84 E-value=1.8e-09 Score=121.83 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeC--CCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 519 (846)
..-..++.++.+.++++|..+||.||.||+|+... ++...++|.+ +..|+.+.|| |+++. +.++ .+
T Consensus 122 ~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~------~e~~~~~f~~-~~~g~~~~L~~Spel~~---~~l~-~g- 189 (422)
T 1n9w_A 122 RAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG------AEGGSGLFGV-DYFEKRAYLAQSPQLYK---QIMV-GV- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCC-----------------------------------CHHHH---HHHH-HH-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC------CCCCceeEEE-eeCCCcEEeeeCHHHHH---HHHh-hC-
Confidence 34568889999999999999999999999998652 1223457777 5667788999 77653 3344 22
Q ss_pred CCceEEEeeceeecCCCCCCCcc-ceEecccccc----cHHHHHHHHHHHHHc
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIA----DFEVVKILTELLNEL 567 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~R-Ef~Q~g~ei~----DaEvI~l~~eil~~l 567 (846)
..|+|++|+|||+|+++.+|.+ ||+|+++|.. ..|++.++.++++.+
T Consensus 190 -~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 190 -FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEM 241 (422)
T ss_dssp -HSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred -CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999888887 9999999987 467888777776654
No 54
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.73 E-value=4.3e-08 Score=112.57 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeC--CCChHHHHHHHHHcCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGL 519 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 519 (846)
..-.++|.++...++++|..+||.||+||+|+..+ ++...++|.+. ..|+.+.|| |++- .-+.++.
T Consensus 175 ~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~-~~~~~~~L~~Spql~--~k~l~~~--- 242 (487)
T 1eov_A 175 QAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVT-YFKGKAYLAQSPQFN--KQQLIVA--- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEE-ETTEEEEECSCTHHH--HHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceec-cCCccEEcccChHHH--HHHHHhc---
Confidence 34568889999999999999999999999998754 12233578774 467889999 7763 3333332
Q ss_pred CCceEEEeeceeecCCCCCCCcc-ceEeccccc-c--c-HHHHHHHHHHHHHc
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYR-EFYQCDFDI-A--D-FEVVKILTELLNEL 567 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~R-Ef~Q~g~ei-~--D-aEvI~l~~eil~~l 567 (846)
.+-|+|+||++||+|.++.+|.+ ||+|+|+|. + | .|++.++.++++.+
T Consensus 243 g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l 295 (487)
T 1eov_A 243 DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFI 295 (487)
T ss_dssp TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHH
T ss_pred CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 25699999999999999888988 999999997 4 3 67888777776653
No 55
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=98.73 E-value=2.9e-08 Score=107.43 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=113.5
Q ss_pred CcccccChhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCC---cCceEEEEcCC---------------
Q 003117 435 KGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGED---SKLIYDLADQG--------------- 496 (846)
Q Consensus 435 ~G~~D~lp~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~---~~~~y~~~D~~--------------- 496 (846)
+|++-+-+....+++.+++.+++ -..+||++|.||.+.+.++|.. +|.. .++||....-.
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~-SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEK-SGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHH-TTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHh-cCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 56777789999999999999999 8889999999999999998865 6653 36788764321
Q ss_pred ---------CCeEeeCCCChHHHHHHHHHc---CCCCceEEEeeceeecCCC-CCCCccceEecccccc------cH---
Q 003117 497 ---------GELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA------DF--- 554 (846)
Q Consensus 497 ---------G~~l~LRpDlT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~------Da--- 554 (846)
+..+.|.|..++|+.-++... ...|+|+..+|+|||+|.. +.-|.|+|.|.++.+| ..
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e 211 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRE 211 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHH
Confidence 347999999999999999853 2448888889999999975 2349999999999888 22
Q ss_pred HHHHHHHHHHHHcCCCceEEEEc
Q 003117 555 EVVKILTELLNELDIGDYEIKLN 577 (846)
Q Consensus 555 EvI~l~~eil~~lgl~~~~i~In 577 (846)
+++..+.++++.||+ +|.+.+.
T Consensus 212 ~l~~~ae~il~~LgL-pyrv~~~ 233 (346)
T 3mf2_A 212 RWMVRAQAIARDLGL-TFRVDYA 233 (346)
T ss_dssp HHHHHHHHHHHHTTC-CCEEEEC
T ss_pred HHHHHHHHHHHHCCC-CEEEEEc
Confidence 367788899999999 5777654
No 56
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.59 E-value=2e-07 Score=106.99 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.++|.++...++++|..+||.||.||+|.+.. .| ...++|.+. |..|+.+.||--.-...-|.++. -.
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G-a~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~---G~ 242 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG-AAARPFITHHNALDMTLYMRIAIELHLKRLIVG---GL 242 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS-SSSCCCEEEETTTTEEEEECSCSHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC-CcccceEecccCCCceeEEecCHHHHHHHHhhc---cc
Confidence 4568889999999999999999999999998542 22 223577775 66788899994333233333332 24
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc---cHHHHHHHHHHHHHc
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA---DFEVVKILTELLNEL 567 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~---DaEvI~l~~eil~~l 567 (846)
-|+|+||++||+|.++..|..||+|+++|.. ..|++.++.++++.+
T Consensus 243 ~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHI 291 (493)
T ss_dssp CEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred CceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 6999999999999988899999999999987 566777766666543
No 57
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.41 E-value=1.2e-06 Score=100.76 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.++|.+|...+++.|..+||.||+||+|.+.. .| ...+.|.+. +.-|..+.||--.-...-|.++. -.
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~G-a~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~---G~ 251 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG-ASARPFITHHNALDLDMYLRIAPELYLKRLVVG---GF 251 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS-SCCCCCEEEETTTTEEEEECSCSHHHHHHHHHH---TC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CC-CcccceEeccCCCCceEEeccCHHHHHHHHhhc---CC
Confidence 3468888999999999999999999999998532 22 223467654 45677888995443333344432 24
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc---cHHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA---DFEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~---DaEvI~l~~eil~~ 566 (846)
-|.|+||++||+|..+..|..||+|+++|.. ..+++.++.++++.
T Consensus 252 ~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT 299 (504)
T ss_dssp CEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 5999999999999988889999999999987 45677766665554
No 58
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.38 E-value=1.4e-06 Score=95.62 Aligned_cols=117 Identities=13% Similarity=0.219 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE--c---CCCCeEeeCCCChHHHHHHHHHc
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA--D---QGGELCSLRYDLTVPFARYVAMN 517 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~--D---~~G~~l~LRpDlT~~iaR~~a~~ 517 (846)
.-.++|.++...+++.|..+||.||+||+|..... ++...+.|++. + ..+..+.|+--.-...-|.++..
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g 108 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV-----TDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAG 108 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC-----CCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC-----CCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcC
Confidence 45688899999999999999999999999986431 11123355542 1 11244567755444455555543
Q ss_pred CCCCceEEEeeceeecCCCCCCCccceEecccccc---cHHHHHHHHHHHHHc
Q 003117 518 GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA---DFEVVKILTELLNEL 567 (846)
Q Consensus 518 ~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~---DaEvI~l~~eil~~l 567 (846)
--|+|+||+|||+|.....|..||+|+++|.. -.+++.++.++++.+
T Consensus 109 ---~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 109 ---CGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp ---CCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred ---CCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHH
Confidence 24999999999999887778999999999986 355777777777664
No 59
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.28 E-value=3.1e-06 Score=96.60 Aligned_cols=128 Identities=22% Similarity=0.179 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHCCCeeecC-CccccccccccccC----C---CcCceEEEEcCC-----------------------
Q 003117 448 REKAFSIITEVFKRHGAMALDT-PVFEMRETLMGKYG----E---DSKLIYDLADQG----------------------- 496 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~t-P~le~~e~~~~~~g----~---~~~~~y~~~D~~----------------------- 496 (846)
..++.+.++++|...||.++.+ |.+++...-....+ + +....|.+.++.
T Consensus 227 l~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 227 LLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccC
Confidence 4667777899999999999875 77776431111111 1 112335554431
Q ss_pred ------------CCeEeeCCCChHHHHHHHHHc----CCCCceEEEeeceeecCCCCCCCccceEecccccc-----cHH
Q 003117 497 ------------GELCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA-----DFE 555 (846)
Q Consensus 497 ------------G~~l~LRpDlT~~iaR~~a~~----~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~-----DaE 555 (846)
++..+||+.+|+..+|.+..| +..|+|+|++|+|||+|.+...+..+|+|++.-++ -++
T Consensus 307 s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~d 386 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGH 386 (508)
T ss_dssp BCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHH
T ss_pred CccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHH
Confidence 157899999999999999864 34799999999999999888889999999988665 467
Q ss_pred HHHHHHHHHHHcCCCceEEE
Q 003117 556 VVKILTELLNELDIGDYEIK 575 (846)
Q Consensus 556 vI~l~~eil~~lgl~~~~i~ 575 (846)
+..++..+++.||+..+.++
T Consensus 387 LKg~Le~~l~~lG~~~~rfr 406 (508)
T 3l4g_A 387 LMGVLREFFTKLGITQLRFK 406 (508)
T ss_dssp HHHHHHHHHHTTTCCCCEEE
T ss_pred HHHHHHHHHHHcCCcceEee
Confidence 88888899999987545444
No 60
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.15 E-value=8.3e-06 Score=92.45 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 442 KEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 442 p~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
..-.++|.++...+++.|..+||.||+||+|..... .| ..++|.+ +--|+.+.||--.-...-+.++ . .
T Consensus 129 ~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG--~~~~F~~-~~~g~~~~L~~SpqLylq~l~~--g--~ 197 (435)
T 2xgt_A 129 AALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EG--GSTLFNL-DYFGEQSFLTQSSQLYLETCIP--T--L 197 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SC--TTSCCEE-EETTEEEEECSCSHHHHHHHHH--H--H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CC--chhceee-ccCCcccccCCChHHHHHHhhh--c--c
Confidence 345688889999999999999999999999876542 11 1235654 3456777887433222223332 1 3
Q ss_pred ceEEEeeceeecCCCCCCCcc-ceEecccccc---cHHHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYR-EFYQCDFDIA---DFEVVKILTELLNE 566 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~R-Ef~Q~g~ei~---DaEvI~l~~eil~~ 566 (846)
-|.|+||++||+|.....|.. ||+|+++|.. ..+++.++.++++.
T Consensus 198 ~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 198 GDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCD 246 (435)
T ss_dssp CSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHH
Confidence 499999999999987766655 9999999986 34566666555544
No 61
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.07 E-value=1.3e-05 Score=90.67 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCce
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFK 523 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~plK 523 (846)
-.++|..+...+++.|..+||.||+||+|..... +...++|.+.. -|+.+.|+-..-...-+.++. -.-|
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~------eg~~~~f~~~~-~~~~~yL~~Spql~~q~l~~~---g~~r 205 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT------EGGTELFPMKY-FEEDAFLAQSPQLYKQIMMAS---GLDR 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS------SCSSSCCEEEE-TTEEEEECSCSHHHHHHGGGT---TCCE
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC------CCCccceeEee-CCccEEEecChHHHHHHHHhc---CCCc
Confidence 4578888999999999999999999999986542 11223666533 466788986554444444432 2459
Q ss_pred EEEeeceeecCCCCCCC-ccceEecccccc--c-H-HHHHHHHHHHHH
Q 003117 524 RHQIAKVYRRDNPSKGR-YREFYQCDFDIA--D-F-EVVKILTELLNE 566 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr-~REf~Q~g~ei~--D-a-EvI~l~~eil~~ 566 (846)
.|+||++||+|..+..| .-||+|+++|.. | - +++.++.++++.
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~ 253 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAH 253 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHH
Confidence 99999999999877664 469999999986 4 3 455555555443
No 62
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.05 E-value=3e-05 Score=85.17 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccc-cccc-cCC-----CcCceEEEEcCCC-----------CeEeeCCCChHH
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRET-LMGK-YGE-----DSKLIYDLADQGG-----------ELCSLRYDLTVP 509 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~-~~~~-~g~-----~~~~~y~~~D~~G-----------~~l~LRpDlT~~ 509 (846)
..++.+.++++|...||.|+.+|.+++... |..- ... +....|.+.++.. +..+||..+++.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 455666789999999999999999987431 1110 111 1134566665432 667899999999
Q ss_pred HHHHHHHcCCCCceEEEeeceeecCCCCCCCccceEecccccc----c-HHHHHHHHHHHHHc-CCC-ceEEE
Q 003117 510 FARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----D-FEVVKILTELLNEL-DIG-DYEIK 575 (846)
Q Consensus 510 iaR~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~l-gl~-~~~i~ 575 (846)
.+|.++.+ ..|+|+|++|+|||++.....+..||+|++.-++ | .++..++..+++.+ |.. .+.++
T Consensus 183 llr~l~~~-~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG~~~~~r~r 254 (350)
T 1b7y_A 183 QVRYMVAH-TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQ 254 (350)
T ss_dssp HHHHHHHC-CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSCSSCCEEEE
T ss_pred HHHHHHhc-CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 99999874 5689999999999986533447789999988776 2 45666777888876 752 34443
No 63
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.93 E-value=2.3e-05 Score=89.92 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=61.2
Q ss_pred eEeeCCCChHHHHHHHHHc---CCCCceEEEeeceeecCCC-CCCCccceEecccccc-----cHHHHHHHHHHHHHcCC
Q 003117 499 LCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA-----DFEVVKILTELLNELDI 569 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lgl 569 (846)
..+||+.+++++...+..| +..|+|+|++|+|||++.+ +.++++||+|+++.+. -.++..++..+++.||+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~LGi 259 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF 259 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999776666654 4678999999999998776 6678899999998876 24677788889988887
Q ss_pred CceEEE
Q 003117 570 GDYEIK 575 (846)
Q Consensus 570 ~~~~i~ 575 (846)
.++.++
T Consensus 260 ~~~r~~ 265 (534)
T 2du3_A 260 ENFRFR 265 (534)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 544443
No 64
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.87 E-value=6.9e-05 Score=87.86 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.++|.++...+++.|..+||.||+||+|..... +.... |.+.. ..|..++||----...-+.++.. -
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~------eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G---~ 206 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP------EGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSG---F 206 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS------SSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC------CCCcc-ceecccccCCceEeCccCHHHHHHHHHhcC---C
Confidence 4578888999999999999999999999974321 11122 44322 35677778754333333334421 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|+||++||+|..+.-|.=||+|+|+|.. | .+++.++.++++
T Consensus 207 ~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dvm~~~E~li~ 253 (585)
T 1c0a_A 207 DRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVR 253 (585)
T ss_dssp CEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHHHHHHHHHHH
Confidence 4999999999999876665449999999986 3 345555544444
No 65
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.86 E-value=6.8e-05 Score=87.70 Aligned_cols=112 Identities=17% Similarity=0.314 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEc--CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D--~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.++|.++...+++.|..+||.||+||+|..... +... -|.+.. ..|..++||----...-+.++.. -
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~------eGAr-~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G---~ 212 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP------EGAR-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAG---L 212 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS------SSSC-CCEEECTTSTTEEEECCSCSHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC------CCCC-CccccccccCCceeECccCHHHHHHHHHHhc---c
Confidence 4578888999999999999999999999975321 1111 243322 24566778754333333334321 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|+||+|||+|..+.-|.=||+|+|+|.. | .+++.++.++++
T Consensus 213 ~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~ 259 (580)
T 1l0w_A 213 DRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMA 259 (580)
T ss_dssp SEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHH
Confidence 4999999999999876665449999999986 3 345555544444
No 66
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.80 E-value=0.00012 Score=84.24 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEE-EcCCCCeEeeCCCChHHHHHHHHHcCCCCc
Q 003117 444 QMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~-~D~~G~~l~LRpDlT~~iaR~~a~~~~~pl 522 (846)
-.++|.++...+++.|..+||.||.||+|.+.. .|. ..+.|.. .+.-+..+.||--.-...-|.++.. --
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA-~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G---~~ 273 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA-AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG---FE 273 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS-SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT---CS
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC-cccccccccccCCcceecccCHHHHHHHHHhcC---CC
Confidence 468888999999999999999999999997432 121 1234432 2333566777755444444555422 35
Q ss_pred eEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
|.|+||++||+|....-|.-||+|+++|.. | .+++.++.++++
T Consensus 274 rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~ 319 (529)
T 4ex5_A 274 RVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIR 319 (529)
T ss_dssp EEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred cEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 999999999999876668889999999986 3 345555444444
No 67
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.80 E-value=6.3e-05 Score=85.53 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCc
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~pl 522 (846)
.-.++|.++...+++.|..+||.||+||+|..... . | ..++|.+ |--|..+.|+--.....-+.++. --
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~-e---G--g~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g----~~ 222 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC-E---G--GSTLFKL-QYFNEPAYLTQSSQLYLESVIAS----LG 222 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------------CCCCEE-EETTEEEEECSCCHHHHHTTHHH----HS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC-C---C--ccccccc-cccCCCcccccCHHHHHHHHHhc----cC
Confidence 34578889999999999999999999999865431 1 1 1224543 33456677876655444444431 35
Q ss_pred eEEEeeceeecCCCCCC-CccceEecccccc--c-HHHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDIA--D-FEVVKILTELLNE 566 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~--D-aEvI~l~~eil~~ 566 (846)
|.|+||++||+|..... +.-||+|+++|.. | .+++.++.++++.
T Consensus 223 rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~ 270 (456)
T 3m4p_A 223 KSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCT 270 (456)
T ss_dssp SEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999976544 4569999999986 3 3455555555443
No 68
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.79 E-value=0.00013 Score=84.27 Aligned_cols=114 Identities=16% Similarity=0.273 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEE-cCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLA-DQGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~-D~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
.-.++|.++...+++.|..+||.||.||+|.+.. .| ...+.|... +.-|..+.||--.-...-|.++.. -
T Consensus 174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG-a~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g---~ 244 (521)
T 3bju_A 174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG-AVAKPFITYHNELDMNLYMRIAPELYHKMLVVGG---I 244 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS-SSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC-ccccceeeecccCCcceEeeCCHHHHHHHHHhcC---c
Confidence 3457888899999999999999999999997532 12 122355442 234667888865544444555521 3
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHH
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLN 565 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~ 565 (846)
-|.|+||++||+|....-|.-||+|+++|.. | .+++.++.++++
T Consensus 245 ~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~ 291 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVS 291 (521)
T ss_dssp CEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred CceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHH
Confidence 4999999999999776668889999999986 3 345555444444
No 69
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.71 E-value=7.9e-05 Score=85.47 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=55.6
Q ss_pred CeEeeCCCChHHHHHHHHHc---CCCCceEEEeeceeecCCC-CCCCccceEecccccc-----cHHHHHHHHHHHHHcC
Q 003117 498 ELCSLRYDLTVPFARYVAMN---GLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA-----DFEVVKILTELLNELD 568 (846)
Q Consensus 498 ~~l~LRpDlT~~iaR~~a~~---~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~-----DaEvI~l~~eil~~lg 568 (846)
+..+||+.+++++...+..+ +..|+|+|++|+|||.+.+ ...+++||+|++.-+. -.++..++..+++.||
T Consensus 191 e~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LG 270 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFG 270 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGT
T ss_pred cccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35689999999766666554 4679999999999997653 4457899999988776 3456677888888887
Q ss_pred C
Q 003117 569 I 569 (846)
Q Consensus 569 l 569 (846)
+
T Consensus 271 i 271 (549)
T 2du7_A 271 F 271 (549)
T ss_dssp C
T ss_pred C
Confidence 6
No 70
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.66 E-value=0.00014 Score=83.95 Aligned_cols=114 Identities=13% Similarity=0.205 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCCc
Q 003117 443 EQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSF 522 (846)
Q Consensus 443 ~~~~~~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~pl 522 (846)
.-.++|..+...+++.|..+||.||.||+|..... +...+.|.+ +.-|..+.|+--.-...-|.++. -.-
T Consensus 242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~------egga~~F~v-~~~~~~~yL~~Spql~~k~ll~~---g~~ 311 (548)
T 3i7f_A 242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS------EGGSNIFEV-KYFDRKAYLAQSPQLYKQMAIMG---DFR 311 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC--------------------------CCBCSCTHHHHHHHHTT---TCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC------CCCcceeEE-ecCCCceEeccCHHHHHHHHHhc---CcC
Confidence 34578888999999999999999999999976541 112234543 22234456765543343455442 235
Q ss_pred eEEEeeceeecCCCCCC-CccceEecccccc---c-HHHHHHHHHHHHH
Q 003117 523 KRHQIAKVYRRDNPSKG-RYREFYQCDFDIA---D-FEVVKILTELLNE 566 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~G-r~REf~Q~g~ei~---D-aEvI~l~~eil~~ 566 (846)
|.|+||++||+|..... +.-||+|+++|.. | .+++.++.+++..
T Consensus 312 rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~ 360 (548)
T 3i7f_A 312 KVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTF 360 (548)
T ss_dssp EEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHH
T ss_pred cEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999976543 4579999999963 3 5677776666544
No 71
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.65 E-value=0.00023 Score=76.58 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccc-cccc-cCCC-----cCceEEEEcCCCCeEeeCCCChHHHHHHHHHcC-C
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRET-LMGK-YGED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMNG-L 519 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~-~~~~-~g~~-----~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~-~ 519 (846)
..++.+.++++|...||.|+.+|.+.+... +... ...+ .+..+.+. +..+||+.+.+.+.|.++.|. .
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e~~vLRtsl~p~ll~~l~~N~~~ 130 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----DEILMRTHTSPVQARTMEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----SSEEECSSSHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----CcceeeccCHHHHHHHHHhcCCC
Confidence 455667789999999999999998877421 1111 1111 11234442 457899999999999999874 5
Q ss_pred CCceEEEeeceeecCCCCCCCccceEecccccc----c-HHHHHHHHHHHHHc-CC
Q 003117 520 TSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----D-FEVVKILTELLNEL-DI 569 (846)
Q Consensus 520 ~plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~l-gl 569 (846)
.|.|+|++|+|||++.....++.||+|++.-+. | .++..++..+++.+ |.
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g~ 186 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGA 186 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHCT
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 689999999999975422235569999877665 3 34555666777776 75
No 72
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.65 E-value=0.00029 Score=82.47 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHH-HCCCeeecCCccccccccccccCCCcCceEEEEc-CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 003117 444 QMAVREKAFSIITEVFK-RHGAMALDTPVFEMRETLMGKYGEDSKLIYDLAD-QGGELCSLRYDLTVPFARYVAMNGLTS 521 (846)
Q Consensus 444 ~~~~~~~i~~~l~~vf~-~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D-~~G~~l~LRpDlT~~iaR~~a~~~~~p 521 (846)
-.++|.++...+++.|. .+||.||+||+|.... . .|. .-|.+.. ..|..+.|+--.-.-.-+.++.. -
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st---~-~GA---~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g---~ 216 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT---P-GGA---KEFLVPSREPGKFYSLPQSPQQFKQLLMVGG---L 216 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC---C-SSS---CCCEEECSSTTCEEECCSSTTHHHHHHHHTS---C
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC---C-CCC---cCceeccccCCcccccccCHHHHHHHHHhcc---c
Confidence 46788889999999996 7999999999997532 1 121 1244322 24677778754322222333321 2
Q ss_pred ceEEEeeceeecCCCCCCCccceEecccccc--c-HHHHHHHHHHHHHc
Q 003117 522 FKRHQIAKVYRRDNPSKGRYREFYQCDFDIA--D-FEVVKILTELLNEL 567 (846)
Q Consensus 522 lK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~--D-aEvI~l~~eil~~l 567 (846)
-|.|+||++||+|..+..|.-||+|+++|.. | .+++.++.++++.+
T Consensus 217 ~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 217 DRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYS 265 (617)
T ss_dssp SEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHH
Confidence 4999999999999887778899999999986 3 44666666666553
No 73
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.35 E-value=0.00093 Score=77.31 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=55.1
Q ss_pred eEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCCC-CCCCccceEecccccc----c-HHHHHHHHHHHHHcCC
Q 003117 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA----D-FEVVKILTELLNELDI 569 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~lgl 569 (846)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+. | .++..++..+++.||+
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi 278 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF 278 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999966555554 34679999999999997653 3346789999877665 3 3455677778888876
Q ss_pred CceEEE
Q 003117 570 GDYEIK 575 (846)
Q Consensus 570 ~~~~i~ 575 (846)
..+.++
T Consensus 279 ~~vrfr 284 (648)
T 2odr_B 279 TNFKFI 284 (648)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 434443
No 74
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.34 E-value=0.00095 Score=77.31 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=55.1
Q ss_pred eEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCCC-CCCCccceEecccccc----c-HHHHHHHHHHHHHcCC
Q 003117 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA----D-FEVVKILTELLNELDI 569 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~lgl 569 (846)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+. | .++..++..+++.||+
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi 278 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF 278 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999966555554 34679999999999997653 3346789999887665 3 3455677778888876
Q ss_pred CceEEE
Q 003117 570 GDYEIK 575 (846)
Q Consensus 570 ~~~~i~ 575 (846)
..+.++
T Consensus 279 ~~vrfr 284 (665)
T 2odr_A 279 TNFKFI 284 (665)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 434443
No 75
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.34 E-value=0.00097 Score=77.34 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=55.2
Q ss_pred eEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCCC-CCCCccceEecccccc----c-HHHHHHHHHHHHHcCC
Q 003117 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA----D-FEVVKILTELLNELDI 569 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~lgl 569 (846)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+. | .++..++..+++.||+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi 278 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF 278 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999966555554 34679999999999997653 3346789999887665 3 3455677788888876
Q ss_pred CceEEE
Q 003117 570 GDYEIK 575 (846)
Q Consensus 570 ~~~~i~ 575 (846)
..+.++
T Consensus 279 ~~vrfr 284 (685)
T 2odr_D 279 TNFKFI 284 (685)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 434443
No 76
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.30 E-value=0.0011 Score=77.24 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=55.2
Q ss_pred eEeeCCCChHHHHHHHHH---cCCCCceEEEeeceeecCCC-CCCCccceEecccccc----c-HHHHHHHHHHHHHcCC
Q 003117 499 LCSLRYDLTVPFARYVAM---NGLTSFKRHQIAKVYRRDNP-SKGRYREFYQCDFDIA----D-FEVVKILTELLNELDI 569 (846)
Q Consensus 499 ~l~LRpDlT~~iaR~~a~---~~~~plK~y~ig~VfR~e~p-~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~lgl 569 (846)
.-+||+.+++++...+.. ++..|+|+|++|+|||++.. ...++.||+|.+.=+. | .++..++..+++.||+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi 278 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF 278 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 568999999966555554 34679999999999997653 3346789999887665 3 3455677788888876
Q ss_pred CceEEE
Q 003117 570 GDYEIK 575 (846)
Q Consensus 570 ~~~~i~ 575 (846)
..+.++
T Consensus 279 ~~vrfr 284 (701)
T 2odr_C 279 TNFKFI 284 (701)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 434443
No 77
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=97.03 E-value=0.0049 Score=62.94 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCC-CcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHcC---CCCc
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG---LTSF 522 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~-~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~~---~~pl 522 (846)
.+++++.+++.+...||.|+.|-.|...+.+.. .+. ..+..+++.++ +.+.-+||+.+.+++.+.++.|. ..++
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 346677789999999999999999987664422 221 12346777776 55677899999999999999863 3468
Q ss_pred eEEEeeceeecCCCC------CCCccceEeccccc---------------ccH-HHHHHHHHHHHHcCCC--ceEEEE
Q 003117 523 KRHQIAKVYRRDNPS------KGRYREFYQCDFDI---------------ADF-EVVKILTELLNELDIG--DYEIKL 576 (846)
Q Consensus 523 K~y~ig~VfR~e~p~------~Gr~REf~Q~g~ei---------------~Da-EvI~l~~eil~~lgl~--~~~i~I 576 (846)
|+|++|+||+.+... .+.++|....++=+ +|. ++-.++..++..+|++ ++.+.-
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~~ 162 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVGN 162 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEEE
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 999999999975311 12345555544422 133 3444667778888876 455543
No 78
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.94 E-value=0.0012 Score=71.55 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccC--CC-----cCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCC
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYG--ED-----SKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLT 520 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g--~~-----~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~ 520 (846)
...+.+.++++|...||.++.+|.++....-....+ .+ .+..|.+. +..+||..+++..+|.+..+ ..
T Consensus 109 ~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----e~~vLRThtsp~~lr~l~~~-~~ 183 (327)
T 3pco_A 109 VTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----TTRLLRTQTSGVQIRTMKAQ-QP 183 (327)
T ss_dssp HHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----SSCEECSCTHHHHHHHHTTC-CS
T ss_pred HHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----CCceecccCCHHHHHHHHhC-CC
Confidence 355667789999999999999998865321111111 11 01234442 34689999999999999764 56
Q ss_pred CceEEEeeceeecCCCCCCCccceEecccccc----c-HHHHHHHHHHHHHc
Q 003117 521 SFKRHQIAKVYRRDNPSKGRYREFYQCDFDIA----D-FEVVKILTELLNEL 567 (846)
Q Consensus 521 plK~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----D-aEvI~l~~eil~~l 567 (846)
|+|+|++|+|||++ ....+.-+|+|.+.-++ + .++-.++..+++.|
T Consensus 184 pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 184 PIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999999987 34456678999764444 2 23334455555554
No 79
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=96.92 E-value=0.0067 Score=61.90 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCC-CcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCc
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE-DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSF 522 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~-~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~pl 522 (846)
.+++++.+++.+...||.|+.|-.|...+.+.. .+. ..+..+++.++ +.+.-+||+.+.+++.+.++.| +..++
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 456777899999999999999999987664422 221 11345667666 6677889999999999999875 23358
Q ss_pred eEEEeeceeecCCCC------CCCccceEeccccc---------------ccHH-HHHHHHHHHHHcCCC--ceEEEEc
Q 003117 523 KRHQIAKVYRRDNPS------KGRYREFYQCDFDI---------------ADFE-VVKILTELLNELDIG--DYEIKLN 577 (846)
Q Consensus 523 K~y~ig~VfR~e~p~------~Gr~REf~Q~g~ei---------------~DaE-vI~l~~eil~~lgl~--~~~i~In 577 (846)
|+|++|+||+.+... .+.++|....++-+ +|.. +-.++..++..+|++ .+.+.-.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~~~ 163 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTA 163 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEeec
Confidence 999999999865311 12235555443321 2443 445677788889886 4665543
No 80
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.86 E-value=0.0048 Score=72.54 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCeeecCCccccccccccccCC--CcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHcC--CCCce
Q 003117 449 EKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGE--DSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNG--LTSFK 523 (846)
Q Consensus 449 ~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~--~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~~--~~plK 523 (846)
+++.+.++++|...||.|+.|+.|...+......+. +....+++.++ +.+.-+||+.+.+++.+.++.|. ..|+|
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vr 473 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 473 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 445667899999999999999999876532122221 12345667665 44566899999999999998763 34899
Q ss_pred EEEeeceeecCCCCCCCccceEecccccc----cHHHHH-HHHHHHHHcCCC
Q 003117 524 RHQIAKVYRRDNPSKGRYREFYQCDFDIA----DFEVVK-ILTELLNELDIG 570 (846)
Q Consensus 524 ~y~ig~VfR~e~p~~Gr~REf~Q~g~ei~----DaEvI~-l~~eil~~lgl~ 570 (846)
+|++|+|||.+....-.++|+.+.+.-+. +.+.++ ++..+++.||++
T Consensus 474 lFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 474 LFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCC
T ss_pred EEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999976432234678888765443 455444 566778888875
No 81
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.35 E-value=0.016 Score=70.46 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCc-eEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCc
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKL-IYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSF 522 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~-~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~pl 522 (846)
.+++.+.++++|...||.|+.|..|...+.+ ...+. ... .+++.++ +.+.-+||+.+.+.+.+.++.| +..|+
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~-~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL-QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS-SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC-CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 4556667899999999999998888776544 22322 233 4677765 4456689999999999999875 46789
Q ss_pred eEEEeeceeecCCCCCCCccceEeccccc---------------ccHH-HHHHHHHHHHHcCCC
Q 003117 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDI---------------ADFE-VVKILTELLNELDIG 570 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~g~ei---------------~DaE-vI~l~~eil~~lgl~ 570 (846)
|+|++|+|||.+.....+ +|+.|.++=+ +|.. +-.++..+++.||++
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 999999999964321123 7887765422 2333 344566667777764
No 82
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=95.43 E-value=0.042 Score=66.48 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---C-CCCc
Q 003117 448 REKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---G-LTSF 522 (846)
Q Consensus 448 ~~~i~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~-~~pl 522 (846)
.+++.+.++++|...||.|+.|-.|...+.+ ...+.. +..+++.++ +.+.-+||+.+.+.+.+.++.| + ..|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~~-~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRLD-PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTCC-CCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCCC-CCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 4556677899999999999988887766543 223211 234677665 4556689999999999999876 5 5789
Q ss_pred eEEEeeceeecCCCCCCCccceEeccccc--------------ccH-HHHHHHHHHHHHcCCCceEE
Q 003117 523 KRHQIAKVYRRDNPSKGRYREFYQCDFDI--------------ADF-EVVKILTELLNELDIGDYEI 574 (846)
Q Consensus 523 K~y~ig~VfR~e~p~~Gr~REf~Q~g~ei--------------~Da-EvI~l~~eil~~lgl~~~~i 574 (846)
|+|++|+||| + +|+.|.++=+ +|. ++-.++..+++.||+ ++.+
T Consensus 569 rlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi-~~~~ 626 (785)
T 1b7y_B 569 LLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGL-AFRV 626 (785)
T ss_dssp EEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTC-CCEE
T ss_pred EEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCC-ceEE
Confidence 9999999999 3 4555543321 243 344456667777776 3444
No 83
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=94.34 E-value=0.059 Score=60.43 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHC--------CCeeecC-CccccccccccccC--CC-----cCceEEEEcCCCCeEeeCCCChHHHHH
Q 003117 449 EKAFSIITEVFKRH--------GAMALDT-PVFEMRETLMGKYG--ED-----SKLIYDLADQGGELCSLRYDLTVPFAR 512 (846)
Q Consensus 449 ~~i~~~l~~vf~~~--------G~~eI~t-P~le~~e~~~~~~g--~~-----~~~~y~~~D~~G~~l~LRpDlT~~iaR 512 (846)
..+.+.|+++|... ||.++.+ |.++.........+ .+ ....|.+ + +..+||...++..+|
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi-~---~~~vLRThts~~~~~ 126 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL-N---RTHMLRAHTSAHQWD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS-S---SSEEECSSGGGGHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe-c---CCeEEcCCCcHHHHH
Confidence 44555566666554 9999998 66665432111121 11 1234444 2 247899999999999
Q ss_pred HHHHcCCCCceEEEeeceeecCCCCCCCccceEecc-cccccH
Q 003117 513 YVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCD-FDIADF 554 (846)
Q Consensus 513 ~~a~~~~~plK~y~ig~VfR~e~p~~Gr~REf~Q~g-~ei~Da 554 (846)
.+..+. | |++.+|.|||++.....++-+|+|.. +-++|.
T Consensus 127 ~l~~~~--~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~ 166 (415)
T 3cmq_A 127 LLHAGL--D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSK 166 (415)
T ss_dssp HHHTTC--S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEH
T ss_pred HHHHCC--C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEec
Confidence 998653 4 99999999999876677888999875 444443
No 84
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=90.63 E-value=0.6 Score=56.56 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=76.5
Q ss_pred HHHHHHHHHHCCCeeecCCccccccccccccCCCcCceEEEEcC-CCCeEeeCCCChHHHHHHHHHc---CCCCceEEEe
Q 003117 452 FSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMN---GLTSFKRHQI 527 (846)
Q Consensus 452 ~~~l~~vf~~~G~~eI~tP~le~~e~~~~~~g~~~~~~y~~~D~-~G~~l~LRpDlT~~iaR~~a~~---~~~plK~y~i 527 (846)
.+.+++.+...||.|+.|-.|...+.+.. .+. .+...++.++ +.+.=+||+.+.+++...++.| +..++|+|++
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~-~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEi 572 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP-GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFES 572 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS-SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEe
Confidence 44578889999999999999987664322 232 1234566665 5566689999999999998875 3457999999
Q ss_pred eceeecCCCCCCCccceEeccccc---------------ccHHHH-HHHHHHHHHcCC
Q 003117 528 AKVYRRDNPSKGRYREFYQCDFDI---------------ADFEVV-KILTELLNELDI 569 (846)
Q Consensus 528 g~VfR~e~p~~Gr~REf~Q~g~ei---------------~DaEvI-~l~~eil~~lgl 569 (846)
|+||+.+......++|....++=+ +|..-+ .++..++..+|+
T Consensus 573 G~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 573 GLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred eeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999986533222344444433211 244433 355566677775
No 85
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=85.57 E-value=0.31 Score=55.66 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCC----CCCHHHHHHHHHH
Q 003117 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTV 78 (846)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~----~l~~~~vRa~m~~ 78 (846)
++|+|+|+ +||+++|+.|+.+.+++.++++.+++++++... ++..++|..+.|.|. .++++.....-.-
T Consensus 1 ~~v~l~g~--~Lt~~~v~~va~~~~~v~l~~~a~~~i~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~I~~~~~~~lQ~n 78 (507)
T 1gkm_A 1 TELTLKPG--TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRS 78 (507)
T ss_dssp CEEEECTT--CCCHHHHHHHHHSCCEEEECGGGHHHHHHHHHHHHHHHHTTCCCTTTTBCSGGGTTCBCCHHHHHHHHHH
T ss_pred CeEEECCC--CCCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHH
Confidence 36899996 899999999999889999999999999988641 344567777888876 4667777766665
Q ss_pred HHHHhcCC
Q 003117 79 LLNKLLLG 86 (846)
Q Consensus 79 rln~l~~G 86 (846)
-+-+.+.|
T Consensus 79 Li~sha~G 86 (507)
T 1gkm_A 79 LVLSHAAG 86 (507)
T ss_dssp HHHHHCCC
T ss_pred HHHHHhcc
Confidence 55566555
No 86
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=82.36 E-value=0.29 Score=56.21 Aligned_cols=76 Identities=8% Similarity=0.165 Sum_probs=59.0
Q ss_pred EEEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCC----CCCHHHHHHHHHHH
Q 003117 9 VITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVL 79 (846)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~----~l~~~~vRa~m~~r 79 (846)
.|+|+|+ +||+++|+.|+.+.++|.++++++++++++... ++..++|..+.|.|. .++++.....-.--
T Consensus 27 ~v~l~g~--~Ltl~~v~~va~~~~~v~ls~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nL 104 (547)
T 3unv_A 27 FHISSGK--DISLEEIARAARDHQPVTLHDEVVNRVTRSRSILESMVSDERVIYGVNTSMGGFVNYIVPIAKASELQNNL 104 (547)
T ss_dssp EEECTTC--CCCHHHHHHHHHHTCCEEECHHHHHHHHHHHHHHHHHHHTTCCCBTTTBCCGGGTTCBCCGGGHHHHHHHH
T ss_pred eEEEcCC--CCCHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHhcCCceeceecCCCCccCCccCHHHHHHHHHHH
Confidence 4899996 899999999999889999999999999988641 344577888888886 46667666666555
Q ss_pred HHHhcCC
Q 003117 80 LNKLLLG 86 (846)
Q Consensus 80 ln~l~~G 86 (846)
+-+.+.|
T Consensus 105 irsHa~G 111 (547)
T 3unv_A 105 INAVATN 111 (547)
T ss_dssp HHHTCCC
T ss_pred HHHHhcC
Confidence 5555555
No 87
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=79.94 E-value=0.45 Score=54.51 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=57.9
Q ss_pred EEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCC----CCCHHHHHHHHHHHH
Q 003117 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVLL 80 (846)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~----~l~~~~vRa~m~~rl 80 (846)
|+|+|+ +||+++|+.|+.+.+++.++++.+++++++... ++..++|..+.|.|. .++++.....-.--+
T Consensus 2 v~l~g~--~Lt~~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi 79 (526)
T 2qve_A 2 VSVDGE--TLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLV 79 (526)
T ss_dssp EECCSS--SCCHHHHHHHHHSCCCEECCHHHHHHHHHHHHHHHHHHTTTCCCTTTSBCSGGGGGEEECGGGHHHHHHHHH
T ss_pred eEecCC--CCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCCCcCHHHHHHHHHHHH
Confidence 788996 899999999999989999999999999888641 444677878888887 356666666665555
Q ss_pred HHhcCC
Q 003117 81 NKLLLG 86 (846)
Q Consensus 81 n~l~~G 86 (846)
-+.+.|
T Consensus 80 ~sha~G 85 (526)
T 2qve_A 80 RSHSAG 85 (526)
T ss_dssp HHTCCC
T ss_pred HHHhcc
Confidence 555555
No 88
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=77.14 E-value=0.64 Score=53.58 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=49.1
Q ss_pred EEEEcCCCCCCCccceeEeecCC--cccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCC----CCHHHHHHHHH
Q 003117 9 VITVGGKGSSLNSSSVYAISNGL--AQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKT----LTLEESRAFLT 77 (846)
Q Consensus 9 ~v~l~g~g~~lt~~~vygi~tg~--a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~----l~~~~vRa~m~ 77 (846)
+|+|+|+ +||+++|+.|+.+. +++.++++.+++++++... ++..++|..+.|.|.. ++++.....-.
T Consensus 25 ~v~l~g~--~Lt~~~v~~va~~~~~~~v~l~~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~I~~~~~~~LQ~ 102 (565)
T 2nyn_A 25 NVIIGNQ--KLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQT 102 (565)
T ss_dssp CEEESSS--CCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHSCC-----------------CCSHHHHHHHH
T ss_pred eEEECCC--CCCHHHHHHHHhCCCCceEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHH
Confidence 6999996 89999999999987 8999999999999988641 4445677788888874 55666666655
Q ss_pred HHHHHhcCC
Q 003117 78 VLLNKLLLG 86 (846)
Q Consensus 78 ~rln~l~~G 86 (846)
--+-+.+.|
T Consensus 103 nLirsHa~G 111 (565)
T 2nyn_A 103 NLVWFLKTG 111 (565)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhcc
Confidence 555555555
No 89
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=72.81 E-value=0.98 Score=51.70 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=60.3
Q ss_pred EEEcCCCCCCCccceeEeecCCcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCC----CCCHHHHHHHHHHHH
Q 003117 10 ITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPK----TLTLEESRAFLTVLL 80 (846)
Q Consensus 10 v~l~g~g~~lt~~~vygi~tg~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~----~l~~~~vRa~m~~rl 80 (846)
|+|+ + +||+++|+.|+.+.+++.++++.+++++++... ++..++|..+.|.|. .++++.....-.--+
T Consensus 11 v~l~-~--~Ltl~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nLi 87 (521)
T 2o6y_A 11 VELD-R--HIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLV 87 (521)
T ss_dssp EEES-S--CCCHHHHHHHHTTSSEEEECHHHHHHHHHHHHHHHHHHHTTBCCTTTSBCSGGGGGBBCCGGGHHHHHHHHH
T ss_pred EEeC-C--CCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCCcceecCCCCcccCccCCHHHHHHHHHHHH
Confidence 8899 4 799999999999889999999999999888641 334567777888887 477787777777666
Q ss_pred HHhcCCCCC
Q 003117 81 NKLLLGSSI 89 (846)
Q Consensus 81 n~l~~G~SG 89 (846)
-+.+.|. |
T Consensus 88 ~sha~Gv-G 95 (521)
T 2o6y_A 88 HHLASGV-G 95 (521)
T ss_dssp HHHCCCE-E
T ss_pred HHHhccC-C
Confidence 6776663 5
No 90
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=66.78 E-value=1.5 Score=51.77 Aligned_cols=80 Identities=20% Similarity=0.139 Sum_probs=57.0
Q ss_pred eEEEEcCCCCCCCccceeEeecC---CcccccChhHHHHHHhcCCC-----CCCCCCcccccCCCCCCCH--HHHHHHHH
Q 003117 8 AVITVGGKGSSLNSSSVYAISNG---LAQVRVDSSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTL--EESRAFLT 77 (846)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tg---~a~~~i~~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~l~~--~~vRa~m~ 77 (846)
..|+|+|+ +||+++|+.|+.+ .++|.++++++++++++... ++..++|..+.|.|..-+. +.......
T Consensus 55 ~~v~l~g~--~Ltl~dv~aVa~~~~~~~~v~ls~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~ 132 (714)
T 1w27_A 55 PVVKLGGE--TLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQK 132 (714)
T ss_dssp SEEEECSS--CCCHHHHHHHHCCSCCCCEEEECGGGHHHHHHHHHHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHH
T ss_pred CeEEECCC--CCCHHHHHHHHhcCCCCCeEeeCHHHHHHHHHHHHHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHH
Confidence 45999996 8999999999987 58999999999999988641 3445677778888874221 23333344
Q ss_pred HHHHHhcCCCCC
Q 003117 78 VLLNKLLLGSSI 89 (846)
Q Consensus 78 ~rln~l~~G~SG 89 (846)
--+-+.+.|.-|
T Consensus 133 nLirsHa~Gv~G 144 (714)
T 1w27_A 133 ELIRFLNAGIFG 144 (714)
T ss_dssp HHHHHHCCCCCC
T ss_pred HHHHHHhCCcCC
Confidence 445566666534
No 91
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=56.68 E-value=1.9 Score=50.80 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=55.2
Q ss_pred eEEEEcCCCCC-CCccceeEeec-CCcccccC-hhHHHHHHhcCCC-----CCCCCCcccccCCCCCCCH--HHHHHHHH
Q 003117 8 AVITVGGKGSS-LNSSSVYAISN-GLAQVRVD-SSALDRLSSTLPN-----QNPPPVTKFQIPIPKTLTL--EESRAFLT 77 (846)
Q Consensus 8 ~~v~l~g~g~~-lt~~~vygi~t-g~a~~~i~-~~~~~~lq~~~~~-----~~~~~~~~~h~g~g~~l~~--~~vRa~m~ 77 (846)
..|+|+|+ + ||+++|+.|+. |.++|.++ ++++++++++... ++..++|..+.|.|..-+. +.......
T Consensus 45 ~~v~l~g~--~~Ltl~dv~aVa~~~~~~v~ls~~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~ 122 (705)
T 2yii_A 45 KKITVDGT--TPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTGFGACSSRRTNRLSELQE 122 (705)
T ss_dssp CEEEESSS--SCCCHHHHHHHHHCTTCEEEECHHHHHHHHHHHHHHHHHHHHTTCCCTTTSBCCGGGTTCBCSCHHHHHH
T ss_pred CeEEECCC--CCCCHHHHHHHHhcCCCeEeeChHHHHHHHHHHHHHHHHHHhcCCeeeeeecCCCccccccHHHHHHHHH
Confidence 45899996 8 99999999995 67999999 9999999988641 3345677777888863221 33444444
Q ss_pred HHHHHhcCCC
Q 003117 78 VLLNKLLLGS 87 (846)
Q Consensus 78 ~rln~l~~G~ 87 (846)
--+-+.+.|.
T Consensus 123 nLirsHa~Gv 132 (705)
T 2yii_A 123 SLIRCLLAGV 132 (705)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHHHhcCc
Confidence 4444555554
No 92
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=37.46 E-value=8.2 Score=45.65 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=35.9
Q ss_pred eEEEEcCCCCCCCccceeEeecCCcccccC--hhHHHHHHhcCCC----CCCCCCcccccCCCCCCC
Q 003117 8 AVITVGGKGSSLNSSSVYAISNGLAQVRVD--SSALDRLSSTLPN----QNPPPVTKFQIPIPKTLT 68 (846)
Q Consensus 8 ~~v~l~g~g~~lt~~~vygi~tg~a~~~i~--~~~~~~lq~~~~~----~~~~~~~~~h~g~g~~l~ 68 (846)
..|+|+|+ +||+++|+.|+.+.++|.|+ ++.+++++++... -+. ++|..+.|.|..-+
T Consensus 58 ~~v~l~g~--~Ltl~dv~aVa~~~~~v~l~~~~~a~~ri~~s~~~v~~~~~~-~vYGVnTGfG~~a~ 121 (716)
T 1y2m_A 58 STLELDGY--SLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSM-SVYGVTTGFGGSAD 121 (716)
T ss_dssp SCEEECSS--CCCHHHHHHHHHSCCCEEECCCHHHHHHHHHHHHHHC--------------------
T ss_pred CeEEECCC--CCCHHHHHHHHcCCCeeeeCCCHHHHHHHHHHHHHHHHHhhc-CCCccccCCCcccC
Confidence 34899996 89999999999998999999 9999999888531 122 77777788887433
No 93
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=35.99 E-value=12 Score=41.81 Aligned_cols=31 Identities=19% Similarity=0.604 Sum_probs=23.9
Q ss_pred Cccchhhhhh--CCCCccceeecchHHHHHHHHHH
Q 003117 708 GRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQ 740 (846)
Q Consensus 708 GRYD~Li~~f--g~~~~pAVGfsigleRL~~~L~~ 740 (846)
..|+.++..+ |. .|+.||++|+|||+.++..
T Consensus 378 ~~~~~yl~al~yG~--PP~~G~glGiDRLvmll~g 410 (429)
T 1wyd_A 378 ESFEFFLKWFDYGM--PPHAGFGMGLARLMVMLTG 410 (429)
T ss_dssp GGGHHHHGGGGSCC--CCEEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC--CCceEEEEcHHHHHHHHcC
Confidence 4576777654 53 5899999999999988764
No 94
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=32.63 E-value=3.4e+02 Score=28.85 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred HHHHHHHHHHH-----HCCCeeecCCccccccc-cccc-cCCCcCceEEE--EcCCCCeEeeCCCChHHHHHH-HHHcCC
Q 003117 450 KAFSIITEVFK-----RHGAMALDTPVFEMRET-LMGK-YGEDSKLIYDL--ADQGGELCSLRYDLTVPFARY-VAMNGL 519 (846)
Q Consensus 450 ~i~~~l~~vf~-----~~G~~eI~tP~le~~e~-~~~~-~g~~~~~~y~~--~D~~G~~l~LRpDlT~~iaR~-~a~~~~ 519 (846)
.....+++.|+ .-|+.+|..|+|-+... +... .| ..+-+.| .+-.|..+-+-.-+.- .-|+ +.+++.
T Consensus 10 ~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG--~ErpV~f~i~~~~~~~~eivhSLaK-WKR~aL~~y~f 86 (330)
T 12as_A 10 RQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSG--AEKAVQVKVKALPDAQFEVVHSLAK-WKRQTLGQHDF 86 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTT--TCCCCEECCSSSTTCCEEECSCCTT-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCC--ceecceEecccCCCceEEEeeeHHH-HHHHHHHhCCC
Confidence 34444555555 89999999999887552 1110 11 1233333 3434554433333211 1132 233433
Q ss_pred C-CceEEEeeceeecCC--CCCCCccceEecccccc
Q 003117 520 T-SFKRHQIAKVYRRDN--PSKGRYREFYQCDFDIA 552 (846)
Q Consensus 520 ~-plK~y~ig~VfR~e~--p~~Gr~REf~Q~g~ei~ 552 (846)
. -.++|..-+..|.|. ...-+.-.|.|.|+|.+
T Consensus 87 ~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~v 122 (330)
T 12as_A 87 SAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERV 122 (330)
T ss_dssp CTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEE
T ss_pred CCCCeeEecCcccccCcccCCCceeEEEeeeeeEEe
Confidence 3 479999888788654 33457889999999987
No 95
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=26.72 E-value=2.3e+02 Score=27.30 Aligned_cols=55 Identities=16% Similarity=0.028 Sum_probs=40.5
Q ss_pred ceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHh---cCCCEEEEE
Q 003117 754 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARE---SKIPWMVIV 808 (846)
Q Consensus 754 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~A~~---~gi~~iviI 808 (846)
..|.|+.-+. +.+.+.+.+..|...||..|+-.. +.+++.+++++. +|+..+|.+
T Consensus 13 P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEe
Confidence 4688877666 788899999999999999887652 346666666554 788865544
No 96
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=26.22 E-value=4.6e+02 Score=29.22 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCeeecCCcccccc---ccccccCCCcCceEEEEcCCCCeEeeCCCChHHHHHHHHHcCCCC-ceE
Q 003117 449 EKAFSIITEVFKRHGAMALDTPVFEMRE---TLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTS-FKR 524 (846)
Q Consensus 449 ~~i~~~l~~vf~~~G~~eI~tP~le~~e---~~~~~~g~~~~~~y~~~D~~G~~l~LRpDlT~~iaR~~a~~~~~p-lK~ 524 (846)
..|++.+.+.|+++|...+.+..+-|.+ ++....| |. ||-.++.-....| .|.
T Consensus 6 ~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAG-----M~------------------~FKp~flG~~~p~~~r~ 62 (465)
T 1yfs_A 6 HEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAG-----MV------------------PFKNVFLGLEKRPYKRA 62 (465)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCST-----TS------------------TTHHHHHTSSCCSCSEE
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccc-----hh------------------hhhHHhcCCCCCCCCce
Confidence 3466668999999999999877776632 1111111 22 2333333222233 466
Q ss_pred EEeeceeec-----C--CCC-CCCccceE-ecccccc----cHHHHHHHHHHHHH-cCCCc----eEEEEcchhhHHHHH
Q 003117 525 HQIAKVYRR-----D--NPS-KGRYREFY-QCDFDIA----DFEVVKILTELLNE-LDIGD----YEIKLNHRLLLDGML 586 (846)
Q Consensus 525 y~ig~VfR~-----e--~p~-~Gr~REf~-Q~g~ei~----DaEvI~l~~eil~~-lgl~~----~~i~Inh~~ll~~il 586 (846)
...++|.|- + +.+ .+|.-.|+ |.|=..| -.|.|..++|+|-+ +|+.. +++.-++-.-.+.-.
T Consensus 63 t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~ 142 (465)
T 1yfs_A 63 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWN 142 (465)
T ss_dssp EEEEEEECEETTEECGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHH
T ss_pred eccccccccCCCcccHhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHH
Confidence 777899992 1 222 23433344 4554444 68999999999976 88864 344444444444333
Q ss_pred HhcCCChH
Q 003117 587 EICGVPSE 594 (846)
Q Consensus 587 ~~~gi~~~ 594 (846)
+.+|+|++
T Consensus 143 ~~~G~p~~ 150 (465)
T 1yfs_A 143 EHIGIPSE 150 (465)
T ss_dssp TTTCCCGG
T ss_pred HhcCCCHH
Confidence 44677664
No 97
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=24.73 E-value=2.6e+02 Score=27.06 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=41.4
Q ss_pred ceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHH---hcCCCEEEEEc
Q 003117 754 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRAR---ESKIPWMVIVG 809 (846)
Q Consensus 754 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~A~---~~gi~~iviIg 809 (846)
..|.|+.-+. +.+.+.+.+..|...|+..|+-.. +.+++..++++ .+|++.+|.+-
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3577877766 788899999999999999887762 45676666655 47888555543
No 98
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.05 E-value=2.6e+02 Score=26.99 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=40.3
Q ss_pred ceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHH---HHhcCCCEEEEEc
Q 003117 754 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDR---ARESKIPWMVIVG 809 (846)
Q Consensus 754 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~---A~~~gi~~iviIg 809 (846)
..|.|+.-+. +.+.+.+.+..|...|+..|+-.. ..+++..++ ++.+|++.+|.+-
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3577777766 788899999999999999887652 345555554 5668898555543
No 99
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.76 E-value=41 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=23.3
Q ss_pred CccchhhhhhCCCCccceeecchHHHHHHHHHH
Q 003117 708 GRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 740 (846)
Q Consensus 708 GRYD~Li~~fg~~~~pAVGfsigleRL~~~L~~ 740 (846)
..|+.++..+.-.-.|+.||++|+|||+.++..
T Consensus 383 ~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 415 (434)
T 1x54_A 383 KDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLK 415 (434)
T ss_dssp GGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 346666665421135899999999999888764
No 100
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.20 E-value=3.2e+02 Score=26.27 Aligned_cols=54 Identities=13% Similarity=-0.036 Sum_probs=40.2
Q ss_pred eEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHH---hcCCCEEEEE
Q 003117 755 QVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRAR---ESKIPWMVIV 808 (846)
Q Consensus 755 dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~A~---~~gi~~iviI 808 (846)
.|.|+.-+. +.+.+.+.+..|...|+..|+-.. +.+++..++++ .+|++.+|.+
T Consensus 13 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 577777766 788999999999999999887752 34676666665 4678855544
No 101
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=20.84 E-value=2.7e+02 Score=26.83 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=40.3
Q ss_pred ceEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHH---HHhcCCCEEEEEc
Q 003117 754 TQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDR---ARESKIPWMVIVG 809 (846)
Q Consensus 754 ~dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~---A~~~gi~~iviIg 809 (846)
..|.|+.-+. +.+.+.+.+..|...|+..|+-.. +.+++..++ ++.+|++.+|.+-
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3577777665 788899999999999999887752 346655555 4557888555543
No 102
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=20.54 E-value=3.9e+02 Score=25.58 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=41.4
Q ss_pred eEEEEEcCC-cHHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHh---cCCCEEEEEcC
Q 003117 755 QVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARE---SKIPWMVIVGE 810 (846)
Q Consensus 755 dVlV~~~~~-~~~~a~~la~~Lr~~GI~ael~~~---~~l~~~~~~A~~---~gi~~iviIg~ 810 (846)
.|.|+.-+. +.+.+.+.+..|...|+..|+-.. +.+++.++++++ .|+..+|.+-.
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 69 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAG 69 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEC
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 577777665 788899999999999998887652 457777777654 57776655543
Done!