Query 003120
Match_columns 846
No_of_seqs 332 out of 936
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 9.8E-51 3.3E-55 488.6 44.4 435 366-837 257-710 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 1.3E-47 4.6E-52 461.4 27.2 395 368-789 244-668 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 8.2E-44 2.8E-48 397.6 22.6 229 545-782 33-276 (382)
4 1ldd_A APC2WHB, anaphase promo 98.2 7.5E-08 2.6E-12 82.9 -1.3 24 814-840 2-25 (74)
5 4a64_A Cullin-4B, CUL4B, CUL-4 96.7 0.24 8.1E-06 54.3 23.9 145 366-531 208-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 96.6 0.12 4.2E-06 56.8 20.3 145 366-528 214-362 (364)
7 4ap2_B Cullin-3, CUL-3; ubiqui 96.1 0.15 5E-06 57.2 17.8 152 366-535 231-386 (410)
8 2htj_A P fimbrial regulatory p 93.0 0.2 6.7E-06 42.9 6.7 59 721-779 4-62 (81)
9 3cuo_A Uncharacterized HTH-typ 92.5 0.28 9.7E-06 42.6 7.1 49 716-764 23-71 (99)
10 2fu4_A Ferric uptake regulatio 92.3 0.16 5.5E-06 43.4 5.2 53 713-765 13-72 (83)
11 1sfx_A Conserved hypothetical 91.6 0.19 6.6E-06 44.0 5.0 51 714-764 17-67 (109)
12 3jth_A Transcription activator 90.9 0.63 2.2E-05 40.8 7.7 60 716-778 22-81 (98)
13 1xn7_A Hypothetical protein YH 90.9 0.23 7.9E-06 43.0 4.6 43 722-764 7-49 (78)
14 2jt1_A PEFI protein; solution 90.8 0.4 1.4E-05 41.4 6.0 37 730-766 23-59 (77)
15 2wzk_A Cullin-5, CUL-5; UBL co 90.8 0.32 1.1E-05 54.1 6.8 149 365-529 227-379 (391)
16 3r0a_A Putative transcriptiona 90.6 0.28 9.5E-06 45.5 5.2 52 713-764 22-75 (123)
17 1qgp_A Protein (double strande 90.4 0.17 5.8E-06 43.5 3.3 62 714-778 10-75 (77)
18 1y0u_A Arsenical resistance op 90.4 0.57 1.9E-05 41.1 6.9 56 716-779 30-85 (96)
19 3tgn_A ADC operon repressor AD 89.7 0.54 1.8E-05 43.5 6.5 51 713-764 34-84 (146)
20 2k02_A Ferrous iron transport 89.6 0.31 1.1E-05 43.2 4.4 43 722-764 7-49 (87)
21 1qbj_A Protein (double-strande 89.3 0.63 2.1E-05 40.5 6.1 58 719-779 12-72 (81)
22 2d1h_A ST1889, 109AA long hypo 89.3 0.44 1.5E-05 41.7 5.3 51 714-764 18-69 (109)
23 2dk5_A DNA-directed RNA polyme 89.3 0.64 2.2E-05 41.3 6.3 55 711-765 14-70 (91)
24 1bja_A Transcription regulator 88.4 0.44 1.5E-05 42.9 4.5 50 713-762 12-62 (95)
25 2fbh_A Transcriptional regulat 88.3 0.9 3.1E-05 41.8 6.9 51 714-764 34-85 (146)
26 3hsr_A HTH-type transcriptiona 88.2 0.62 2.1E-05 43.2 5.7 51 714-764 33-83 (140)
27 2pn6_A ST1022, 150AA long hypo 88.0 0.81 2.8E-05 43.3 6.5 49 716-764 2-50 (150)
28 3bpv_A Transcriptional regulat 87.7 0.68 2.3E-05 42.3 5.6 51 714-764 26-76 (138)
29 2gxg_A 146AA long hypothetical 87.6 1.1 3.8E-05 41.3 7.1 49 715-764 35-83 (146)
30 3cdh_A Transcriptional regulat 87.5 0.97 3.3E-05 42.4 6.7 51 714-764 40-90 (155)
31 2heo_A Z-DNA binding protein 1 87.4 0.79 2.7E-05 38.1 5.3 46 718-763 11-57 (67)
32 2vn2_A DNAD, chromosome replic 87.4 0.62 2.1E-05 43.6 5.2 53 712-764 27-84 (128)
33 3ech_A MEXR, multidrug resista 87.2 0.52 1.8E-05 43.7 4.5 52 713-764 33-84 (142)
34 1ku9_A Hypothetical protein MJ 87.2 1.3 4.3E-05 40.9 7.2 50 715-764 24-74 (152)
35 3g3z_A NMB1585, transcriptiona 87.1 0.7 2.4E-05 42.9 5.4 51 714-764 28-78 (145)
36 3nrv_A Putative transcriptiona 87.0 0.79 2.7E-05 42.6 5.7 51 714-764 37-87 (148)
37 1u2w_A CADC repressor, cadmium 86.7 1.2 4.1E-05 41.0 6.7 60 716-778 41-101 (122)
38 1oyi_A Double-stranded RNA-bin 86.7 0.79 2.7E-05 40.1 5.0 61 714-778 14-74 (82)
39 1ub9_A Hypothetical protein PH 86.6 0.62 2.1E-05 40.4 4.4 49 715-763 14-62 (100)
40 3bro_A Transcriptional regulat 86.6 1.1 3.9E-05 40.9 6.5 51 714-764 31-83 (141)
41 3bj6_A Transcriptional regulat 86.5 1 3.6E-05 41.8 6.3 51 714-764 37-87 (152)
42 3oop_A LIN2960 protein; protei 86.5 0.72 2.5E-05 42.7 5.1 51 714-764 34-84 (143)
43 2w25_A Probable transcriptiona 86.3 0.86 2.9E-05 43.2 5.6 49 715-763 5-53 (150)
44 2nnn_A Probable transcriptiona 86.2 0.73 2.5E-05 42.1 4.9 51 714-764 35-85 (140)
45 3eco_A MEPR; mutlidrug efflux 86.2 1 3.5E-05 41.3 6.0 51 714-764 28-80 (139)
46 3bdd_A Regulatory protein MARR 86.2 0.92 3.2E-05 41.5 5.6 51 714-764 28-78 (142)
47 2fa5_A Transcriptional regulat 86.1 0.92 3.1E-05 42.8 5.7 51 714-764 46-96 (162)
48 2qww_A Transcriptional regulat 85.9 0.84 2.9E-05 42.7 5.3 50 714-763 38-87 (154)
49 1i1g_A Transcriptional regulat 85.9 0.66 2.3E-05 43.3 4.5 49 716-764 3-51 (141)
50 2cfx_A HTH-type transcriptiona 85.7 0.98 3.4E-05 42.6 5.7 49 715-763 3-51 (144)
51 4hbl_A Transcriptional regulat 85.6 0.79 2.7E-05 42.9 4.9 51 714-764 38-88 (149)
52 1tbx_A ORF F-93, hypothetical 85.5 0.74 2.5E-05 40.3 4.4 51 714-764 5-59 (99)
53 3pqk_A Biofilm growth-associat 85.4 1.9 6.6E-05 37.9 7.2 61 716-779 22-82 (102)
54 2frh_A SARA, staphylococcal ac 85.4 1.3 4.5E-05 40.7 6.2 51 714-764 34-86 (127)
55 2wte_A CSA3; antiviral protein 85.3 1.3 4.5E-05 46.1 6.9 62 714-779 149-210 (244)
56 3cjn_A Transcriptional regulat 85.3 0.94 3.2E-05 42.8 5.4 51 714-764 49-99 (162)
57 2a61_A Transcriptional regulat 85.3 0.87 3E-05 41.9 5.0 51 714-764 30-80 (145)
58 2fbi_A Probable transcriptiona 85.2 0.8 2.7E-05 42.0 4.6 51 714-764 33-83 (142)
59 3bja_A Transcriptional regulat 85.1 0.73 2.5E-05 42.1 4.3 51 714-764 30-80 (139)
60 2pex_A Transcriptional regulat 85.1 0.99 3.4E-05 42.2 5.4 50 715-764 45-94 (153)
61 2v79_A DNA replication protein 85.1 0.66 2.3E-05 44.1 4.1 52 712-763 27-83 (135)
62 1jgs_A Multiple antibiotic res 84.7 1.2 4.1E-05 40.7 5.6 50 715-764 32-81 (138)
63 2ia0_A Putative HTH-type trans 84.7 1 3.5E-05 44.1 5.4 53 711-763 11-63 (171)
64 2cg4_A Regulatory protein ASNC 84.7 0.99 3.4E-05 42.9 5.2 50 714-763 5-54 (152)
65 2bv6_A MGRA, HTH-type transcri 84.6 0.8 2.7E-05 42.2 4.4 51 714-764 34-84 (142)
66 3k0l_A Repressor protein; heli 84.6 0.84 2.9E-05 43.4 4.6 51 714-764 43-93 (162)
67 2obp_A Putative DNA-binding pr 84.5 1.1 3.7E-05 40.3 5.0 51 714-764 13-69 (96)
68 2cyy_A Putative HTH-type trans 84.5 1.1 3.6E-05 42.7 5.3 50 715-764 5-54 (151)
69 2rdp_A Putative transcriptiona 84.3 0.98 3.3E-05 41.9 4.9 51 714-764 39-89 (150)
70 2dbb_A Putative HTH-type trans 84.2 1.1 3.6E-05 42.6 5.1 49 715-763 7-55 (151)
71 2nyx_A Probable transcriptiona 84.1 1.1 3.8E-05 42.9 5.3 51 714-764 42-92 (168)
72 1s3j_A YUSO protein; structura 84.1 1.1 3.7E-05 41.9 5.1 51 714-764 34-84 (155)
73 1p6r_A Penicillinase repressor 84.0 1.3 4.6E-05 37.5 5.2 51 714-764 6-60 (82)
74 2hr3_A Probable transcriptiona 83.8 1.1 3.7E-05 41.5 4.9 51 714-764 32-83 (147)
75 3e6m_A MARR family transcripti 83.8 0.94 3.2E-05 43.0 4.6 51 714-764 50-100 (161)
76 2eth_A Transcriptional regulat 83.6 1 3.5E-05 42.3 4.7 51 714-764 41-91 (154)
77 2e1c_A Putative HTH-type trans 83.6 1.3 4.5E-05 43.3 5.7 51 713-763 23-73 (171)
78 1lj9_A Transcriptional regulat 83.5 1.2 4E-05 41.1 5.0 50 715-764 27-76 (144)
79 3deu_A Transcriptional regulat 83.4 1.3 4.3E-05 42.6 5.4 51 714-764 50-101 (166)
80 3f3x_A Transcriptional regulat 83.2 1.3 4.4E-05 41.0 5.2 50 714-764 34-83 (144)
81 2p5v_A Transcriptional regulat 83.0 1.4 5E-05 42.2 5.6 49 715-763 8-56 (162)
82 3kp7_A Transcriptional regulat 83.0 0.86 2.9E-05 42.6 3.9 49 714-763 35-83 (151)
83 2oqg_A Possible transcriptiona 82.9 1.3 4.5E-05 39.5 5.0 48 716-764 20-67 (114)
84 1r1u_A CZRA, repressor protein 82.7 1.7 5.7E-05 38.8 5.5 48 716-764 25-72 (106)
85 3i4p_A Transcriptional regulat 82.7 2 6.9E-05 41.4 6.5 46 718-763 4-49 (162)
86 3t8r_A Staphylococcus aureus C 82.2 3.1 0.00011 39.5 7.5 46 730-778 27-72 (143)
87 3s2w_A Transcriptional regulat 82.1 0.93 3.2E-05 42.8 3.8 51 714-764 47-97 (159)
88 2y75_A HTH-type transcriptiona 81.9 3.2 0.00011 38.2 7.4 48 729-779 24-71 (129)
89 3lwf_A LIN1550 protein, putati 81.7 3.6 0.00012 40.1 7.9 58 719-779 31-89 (159)
90 1z91_A Organic hydroperoxide r 81.6 1.3 4.5E-05 40.9 4.6 50 715-764 38-87 (147)
91 3r4k_A Transcriptional regulat 81.6 1.6 5.3E-05 45.6 5.6 56 720-779 9-65 (260)
92 3k69_A Putative transcription 80.9 2.1 7.1E-05 41.8 5.9 57 719-778 16-72 (162)
93 4fx0_A Probable transcriptiona 80.8 2.2 7.6E-05 40.3 5.9 50 714-763 30-84 (148)
94 1xmk_A Double-stranded RNA-spe 79.9 2.8 9.5E-05 36.3 5.7 59 716-778 10-70 (79)
95 3fm5_A Transcriptional regulat 79.8 1.8 6.2E-05 40.3 4.9 51 714-764 36-87 (150)
96 1sfu_A 34L protein; protein/Z- 79.7 2.6 8.9E-05 36.2 5.3 45 722-766 20-64 (75)
97 3boq_A Transcriptional regulat 79.7 1.1 3.7E-05 42.2 3.3 51 714-764 44-95 (160)
98 3jw4_A Transcriptional regulat 79.6 0.96 3.3E-05 42.1 2.9 51 714-764 38-90 (148)
99 1ylf_A RRF2 family protein; st 79.2 3.2 0.00011 39.5 6.5 57 719-779 18-74 (149)
100 2xrn_A HTH-type transcriptiona 79.0 2.3 7.8E-05 43.8 5.8 55 721-779 10-65 (241)
101 3nqo_A MARR-family transcripti 78.8 2.3 7.9E-05 41.8 5.5 50 715-764 39-90 (189)
102 2jsc_A Transcriptional regulat 78.6 2.5 8.5E-05 38.6 5.3 61 715-779 19-80 (118)
103 4b8x_A SCO5413, possible MARR- 78.6 2.2 7.5E-05 40.2 5.1 51 714-764 32-84 (147)
104 2kko_A Possible transcriptiona 77.9 1.7 5.8E-05 39.1 3.9 47 717-764 25-71 (108)
105 2fxa_A Protease production reg 76.9 1.8 6.2E-05 43.4 4.2 51 714-764 45-95 (207)
106 3mq0_A Transcriptional repress 76.5 2.3 8E-05 44.7 5.1 54 720-778 33-87 (275)
107 3b73_A PHIH1 repressor-like pr 76.4 2.4 8.2E-05 39.0 4.4 60 715-779 11-72 (111)
108 2pg4_A Uncharacterized protein 76.1 2.4 8.3E-05 36.8 4.3 45 718-762 16-62 (95)
109 2lkp_A Transcriptional regulat 76.0 3.1 0.00011 37.5 5.1 47 716-763 31-77 (119)
110 1okr_A MECI, methicillin resis 75.8 1.8 6.1E-05 39.1 3.5 51 714-764 7-61 (123)
111 1sd4_A Penicillinase repressor 75.8 2.6 8.9E-05 38.2 4.6 52 713-764 6-61 (126)
112 3u2r_A Regulatory protein MARR 75.6 1.9 6.4E-05 41.2 3.7 51 714-764 43-95 (168)
113 2g9w_A Conserved hypothetical 75.6 3.9 0.00013 38.1 5.9 51 714-764 6-61 (138)
114 3f6o_A Probable transcriptiona 75.3 2.7 9.3E-05 38.2 4.6 59 716-778 17-76 (118)
115 1xd7_A YWNA; structural genomi 75.0 4.7 0.00016 38.2 6.3 55 719-779 13-67 (145)
116 1mkm_A ICLR transcriptional re 74.1 4.2 0.00014 41.9 6.2 54 720-778 11-65 (249)
117 2hzt_A Putative HTH-type trans 74.1 4.9 0.00017 35.9 5.9 47 717-764 14-61 (107)
118 4aik_A Transcriptional regulat 74.1 4.9 0.00017 38.0 6.2 51 714-764 28-79 (151)
119 2x4h_A Hypothetical protein SS 73.4 5.8 0.0002 36.5 6.4 52 713-764 9-64 (139)
120 1r1t_A Transcriptional repress 72.8 6.3 0.00022 36.2 6.4 47 716-763 45-91 (122)
121 2o0y_A Transcriptional regulat 72.3 4.4 0.00015 42.1 5.8 54 721-779 27-81 (260)
122 1uly_A Hypothetical protein PH 72.1 5.8 0.0002 39.6 6.4 49 715-764 18-66 (192)
123 2g7u_A Transcriptional regulat 71.4 5.8 0.0002 41.1 6.5 55 720-780 17-72 (257)
124 2ia2_A Putative transcriptiona 71.3 4.9 0.00017 41.9 5.9 54 721-780 25-79 (265)
125 2fe3_A Peroxide operon regulat 69.8 8.5 0.00029 36.4 6.8 64 713-777 18-87 (145)
126 1q1h_A TFE, transcription fact 68.9 4.1 0.00014 36.3 4.1 44 721-764 22-66 (110)
127 2qvo_A Uncharacterized protein 68.5 3.6 0.00012 35.8 3.6 49 714-762 9-61 (95)
128 1z7u_A Hypothetical protein EF 66.8 5 0.00017 36.1 4.2 48 716-764 21-69 (112)
129 1on2_A Transcriptional regulat 66.6 7.4 0.00025 35.9 5.5 41 725-765 16-56 (142)
130 1yyv_A Putative transcriptiona 66.1 7.7 0.00026 36.2 5.5 48 715-763 33-81 (131)
131 2f2e_A PA1607; transcription f 65.2 11 0.00039 35.6 6.6 61 716-778 23-84 (146)
132 4a5n_A Uncharacterized HTH-typ 65.2 10 0.00036 35.6 6.2 47 717-764 26-73 (131)
133 1mzb_A Ferric uptake regulatio 64.8 7.5 0.00026 36.4 5.2 64 713-777 14-84 (136)
134 3df8_A Possible HXLR family tr 64.7 7.3 0.00025 35.1 4.9 49 715-764 25-76 (111)
135 3f6v_A Possible transcriptiona 64.6 6.2 0.00021 37.9 4.6 59 716-778 57-116 (151)
136 2p4w_A Transcriptional regulat 64.6 10 0.00035 38.2 6.5 63 716-779 14-79 (202)
137 1r7j_A Conserved hypothetical 63.2 15 0.0005 32.5 6.5 51 720-778 11-61 (95)
138 2k4b_A Transcriptional regulat 62.6 2.3 7.7E-05 38.2 1.0 52 713-764 31-86 (99)
139 2yu3_A DNA-directed RNA polyme 62.5 9.3 0.00032 34.2 5.0 52 714-765 34-87 (95)
140 2b0l_A GTP-sensing transcripti 62.5 6 0.00021 35.5 3.9 45 721-765 32-77 (102)
141 1hsj_A Fusion protein consisti 62.4 8.8 0.0003 42.8 6.1 52 713-764 400-453 (487)
142 1bia_A BIRA bifunctional prote 62.4 13 0.00044 39.9 7.2 58 717-779 5-63 (321)
143 2fbk_A Transcriptional regulat 62.4 2.6 8.9E-05 40.8 1.6 51 714-764 66-119 (181)
144 2fsw_A PG_0823 protein; alpha- 61.8 8.4 0.00029 34.2 4.7 46 718-764 26-72 (107)
145 2o03_A Probable zinc uptake re 61.7 7.6 0.00026 36.1 4.6 62 714-776 8-75 (131)
146 2w57_A Ferric uptake regulatio 60.3 9.2 0.00031 36.5 5.0 64 713-777 13-83 (150)
147 3tqn_A Transcriptional regulat 60.0 11 0.00038 34.1 5.2 42 725-766 26-68 (113)
148 1fse_A GERE; helix-turn-helix 59.3 15 0.00052 29.7 5.5 42 714-757 11-52 (74)
149 2xig_A Ferric uptake regulatio 58.9 11 0.00038 35.9 5.3 64 713-777 23-92 (150)
150 1p4x_A Staphylococcal accessor 58.4 9.9 0.00034 39.5 5.2 52 713-764 154-207 (250)
151 4ham_A LMO2241 protein; struct 58.1 12 0.00043 34.7 5.4 42 725-766 31-73 (134)
152 1v4r_A Transcriptional repress 57.8 3.2 0.00011 36.7 1.2 42 725-766 28-70 (102)
153 2p5k_A Arginine repressor; DNA 57.8 11 0.00038 29.8 4.4 41 719-762 7-52 (64)
154 3neu_A LIN1836 protein; struct 57.7 13 0.00045 34.2 5.4 41 726-766 31-72 (125)
155 3by6_A Predicted transcription 57.4 12 0.00041 34.6 5.1 41 726-766 29-70 (126)
156 1p4x_A Staphylococcal accessor 56.2 9.7 0.00033 39.6 4.7 52 713-764 30-83 (250)
157 2zkz_A Transcriptional repress 55.4 10 0.00035 33.3 4.1 47 716-763 26-72 (99)
158 2ek5_A Predicted transcription 55.2 15 0.00052 34.2 5.4 41 726-766 22-63 (129)
159 3mwm_A ZUR, putative metal upt 54.8 11 0.00039 35.3 4.6 68 710-778 7-80 (139)
160 1j5y_A Transcriptional regulat 54.2 16 0.00056 35.8 5.8 46 718-763 22-69 (187)
161 1je8_A Nitrate/nitrite respons 54.0 19 0.00065 30.5 5.4 42 714-757 21-62 (82)
162 2r3s_A Uncharacterized protein 53.4 17 0.00056 38.3 6.1 43 730-778 38-80 (335)
163 3eyy_A Putative iron uptake re 53.2 10 0.00035 35.9 3.9 64 713-777 15-83 (145)
164 2ip2_A Probable phenazine-spec 53.2 18 0.00062 38.1 6.4 44 730-778 40-83 (334)
165 1x19_A CRTF-related protein; m 53.2 18 0.00063 38.7 6.5 43 730-778 63-105 (359)
166 2xvc_A ESCRT-III, SSO0910; cel 52.9 15 0.0005 30.0 4.1 37 727-763 21-57 (59)
167 1tw3_A COMT, carminomycin 4-O- 52.2 15 0.00053 39.1 5.7 45 730-779 51-95 (360)
168 3mcz_A O-methyltransferase; ad 52.0 17 0.00059 38.6 6.0 42 731-778 56-97 (352)
169 3i53_A O-methyltransferase; CO 51.2 21 0.00073 37.6 6.5 44 730-778 37-80 (332)
170 1x3u_A Transcriptional regulat 50.4 25 0.00087 28.8 5.6 41 715-757 17-57 (79)
171 2x48_A CAG38821; archeal virus 50.4 34 0.0012 26.1 6.0 44 705-752 6-52 (55)
172 2h09_A Transcriptional regulat 50.4 16 0.00054 34.2 4.8 38 728-765 51-88 (155)
173 3dp7_A SAM-dependent methyltra 50.3 17 0.00058 39.2 5.7 44 729-778 48-91 (363)
174 3ulq_B Transcriptional regulat 49.9 24 0.00082 30.7 5.5 45 712-758 27-71 (90)
175 1qzz_A RDMB, aclacinomycin-10- 49.6 18 0.00062 38.7 5.7 44 730-778 48-93 (374)
176 2w48_A Sorbitol operon regulat 49.0 17 0.00058 38.6 5.3 40 727-766 17-57 (315)
177 2qlz_A Transcription factor PF 48.7 17 0.00059 37.4 5.1 54 719-778 167-220 (232)
178 3k2z_A LEXA repressor; winged 47.9 23 0.00079 34.9 5.7 51 715-765 3-58 (196)
179 3c57_A Two component transcrip 47.9 21 0.00073 31.1 4.9 43 714-758 27-69 (95)
180 3u1d_A Uncharacterized protein 47.8 33 0.0011 33.1 6.6 47 717-763 29-78 (151)
181 1z05_A Transcriptional regulat 47.6 23 0.00078 39.2 6.3 61 720-780 42-107 (429)
182 2pi2_A Replication protein A 3 47.3 4 0.00014 43.0 0.0 59 715-777 205-267 (270)
183 1z6r_A MLC protein; transcript 46.2 26 0.00089 38.3 6.4 61 720-780 19-84 (406)
184 3lst_A CALO1 methyltransferase 45.9 20 0.00068 38.3 5.3 44 730-779 54-97 (348)
185 2wv0_A YVOA, HTH-type transcri 45.1 27 0.00093 35.7 5.9 41 726-766 28-69 (243)
186 3bwg_A Uncharacterized HTH-typ 44.6 34 0.0011 34.9 6.5 42 725-766 22-64 (239)
187 1tc3_C Protein (TC3 transposas 44.3 25 0.00085 25.4 4.1 33 721-755 13-45 (51)
188 3c7j_A Transcriptional regulat 44.1 19 0.00063 36.8 4.5 42 725-766 43-84 (237)
189 2oz6_A Virulence factor regula 43.3 28 0.00096 33.3 5.5 34 732-765 165-198 (207)
190 3f8m_A GNTR-family protein tra 43.2 33 0.0011 35.2 6.2 44 722-767 27-71 (248)
191 3edp_A LIN2111 protein; APC883 43.0 25 0.00086 35.9 5.3 41 726-766 27-68 (236)
192 4a0z_A Transcription factor FA 42.5 19 0.00065 35.9 4.1 45 719-763 14-58 (190)
193 1hw1_A FADR, fatty acid metabo 42.5 23 0.0008 35.5 4.9 41 726-766 25-66 (239)
194 3ryp_A Catabolite gene activat 42.4 30 0.001 33.2 5.5 34 732-765 168-201 (210)
195 3lmm_A Uncharacterized protein 42.4 24 0.00082 41.2 5.5 59 716-780 429-492 (583)
196 4ev0_A Transcription regulator 41.3 30 0.001 33.4 5.3 35 731-765 163-197 (216)
197 3cuq_B Vacuolar protein-sortin 41.2 78 0.0027 32.2 8.6 50 715-764 152-201 (218)
198 3dv8_A Transcriptional regulat 41.1 32 0.0011 33.3 5.5 35 731-765 169-203 (220)
199 3hrs_A Metalloregulator SCAR; 40.4 31 0.0011 34.6 5.4 44 722-765 11-54 (214)
200 3gwz_A MMCR; methyltransferase 40.3 23 0.00078 38.3 4.7 44 730-778 70-114 (369)
201 3eet_A Putative GNTR-family tr 39.7 34 0.0012 35.8 5.7 41 726-766 47-88 (272)
202 3rkx_A Biotin-[acetyl-COA-carb 39.0 40 0.0014 36.3 6.3 57 718-779 4-63 (323)
203 2zcw_A TTHA1359, transcription 38.9 35 0.0012 32.7 5.4 34 732-765 147-180 (202)
204 2p7v_B Sigma-70, RNA polymeras 38.8 62 0.0021 25.9 6.1 43 715-757 6-51 (68)
205 3iwz_A CAP-like, catabolite ac 38.5 37 0.0013 33.1 5.5 34 732-765 188-221 (230)
206 2rnj_A Response regulator prot 38.4 22 0.00074 30.6 3.3 41 715-757 30-70 (91)
207 3d0s_A Transcriptional regulat 37.7 37 0.0013 33.1 5.4 34 732-765 178-211 (227)
208 3la7_A Global nitrogen regulat 37.5 38 0.0013 33.8 5.5 35 731-765 193-227 (243)
209 2o0m_A Transcriptional regulat 37.4 7 0.00024 42.3 0.0 50 713-762 16-65 (345)
210 3e97_A Transcriptional regulat 37.1 38 0.0013 33.1 5.4 35 731-765 175-209 (231)
211 1tty_A Sigma-A, RNA polymerase 36.9 47 0.0016 28.2 5.3 42 715-756 19-63 (87)
212 3cuq_A Vacuolar-sorting protei 36.9 67 0.0023 33.2 7.2 67 713-780 150-216 (234)
213 2gau_A Transcriptional regulat 36.6 39 0.0013 33.0 5.4 35 731-765 180-214 (232)
214 3t72_q RNA polymerase sigma fa 35.4 44 0.0015 29.7 4.9 39 715-753 20-61 (99)
215 1zyb_A Transcription regulator 35.4 42 0.0014 33.1 5.4 34 732-765 187-220 (232)
216 3dkw_A DNR protein; CRP-FNR, H 35.1 31 0.0011 33.5 4.3 35 731-765 178-212 (227)
217 3b02_A Transcriptional regulat 34.9 33 0.0011 32.8 4.4 34 732-765 140-173 (195)
218 3e6c_C CPRK, cyclic nucleotide 34.5 47 0.0016 33.1 5.7 35 731-765 177-211 (250)
219 3sxy_A Transcriptional regulat 33.5 29 0.001 34.5 3.9 42 725-766 29-70 (218)
220 3ihu_A Transcriptional regulat 33.4 54 0.0018 32.6 5.9 42 725-766 33-74 (222)
221 1ft9_A Carbon monoxide oxidati 33.4 40 0.0014 32.9 4.8 34 732-765 164-197 (222)
222 1bby_A RAP30; average structur 33.0 47 0.0016 28.0 4.4 57 718-780 9-65 (69)
223 2jpc_A SSRB; DNA binding prote 33.0 39 0.0013 26.3 3.8 36 721-758 5-40 (61)
224 2fmy_A COOA, carbon monoxide o 32.9 53 0.0018 31.9 5.6 34 731-764 167-200 (220)
225 3i71_A Ethanolamine utilizatio 32.8 1.5E+02 0.0051 24.2 7.0 46 729-780 16-61 (68)
226 2hoe_A N-acetylglucosamine kin 32.7 33 0.0011 37.3 4.4 58 723-781 26-87 (380)
227 1stz_A Heat-inducible transcri 32.7 46 0.0016 36.1 5.5 51 716-766 16-73 (338)
228 2o8x_A Probable RNA polymerase 32.1 63 0.0021 25.5 5.0 40 715-756 16-56 (70)
229 1ku3_A Sigma factor SIGA; heli 32.0 62 0.0021 26.3 5.0 40 715-754 11-53 (73)
230 2hs5_A Putative transcriptiona 31.9 43 0.0015 34.0 4.9 42 725-766 45-86 (239)
231 1p4w_A RCSB; solution structur 31.2 49 0.0017 29.3 4.6 43 714-758 34-76 (99)
232 3kcc_A Catabolite gene activat 31.0 54 0.0019 33.1 5.5 34 732-765 218-251 (260)
233 4ets_A Ferric uptake regulatio 30.7 66 0.0023 30.9 5.7 65 713-778 29-101 (162)
234 3hug_A RNA polymerase sigma fa 30.5 65 0.0022 27.4 5.2 40 715-756 38-78 (92)
235 2qlz_A Transcription factor PF 29.9 21 0.00071 36.8 2.1 63 716-779 11-77 (232)
236 1ufm_A COP9 complex subunit 4; 29.5 86 0.0029 27.1 5.7 45 718-762 17-61 (84)
237 2gqq_A Leucine-responsive regu 29.4 5.7 0.00019 38.1 -2.2 49 714-762 10-58 (163)
238 2bgc_A PRFA; bacterial infecti 29.1 53 0.0018 32.5 4.9 35 731-765 169-204 (238)
239 1oks_A RNA polymerase alpha su 27.9 50 0.0017 26.3 3.4 45 571-615 5-49 (56)
240 2di3_A Bacterial regulatory pr 27.8 57 0.0019 32.9 4.9 39 725-763 21-60 (239)
241 3eqx_A FIC domain containing t 27.5 50 0.0017 36.3 4.7 44 723-766 303-346 (373)
242 2qc0_A Uncharacterized protein 27.3 47 0.0016 36.3 4.5 38 728-765 308-345 (373)
243 3mzy_A RNA polymerase sigma-H 27.1 60 0.0021 29.6 4.6 39 715-755 110-148 (164)
244 4a6d_A Hydroxyindole O-methylt 26.6 43 0.0015 35.9 4.0 47 730-778 42-88 (353)
245 3htu_A Vacuolar protein-sortin 25.2 67 0.0023 27.8 4.1 40 720-759 11-63 (79)
246 3ic7_A Putative transcriptiona 24.8 13 0.00043 34.4 -0.6 41 726-766 29-70 (126)
247 4g6q_A Putative uncharacterize 24.8 79 0.0027 30.8 5.2 48 715-763 21-69 (182)
248 2l02_A Uncharacterized protein 24.7 86 0.0029 27.3 4.6 38 724-761 15-53 (82)
249 2lnb_A Z-DNA-binding protein 1 23.8 62 0.0021 28.0 3.5 46 720-765 22-68 (80)
250 2l01_A Uncharacterized protein 23.4 1.1E+02 0.0039 26.2 5.1 37 723-759 16-53 (77)
251 1u5t_A Appears to BE functiona 23.1 70 0.0024 33.1 4.5 52 713-764 163-214 (233)
252 3ke2_A Uncharacterized protein 21.7 1.1E+02 0.0039 28.2 5.0 49 730-778 32-82 (117)
253 2lfc_A Fumarate reductase, fla 21.4 63 0.0022 30.8 3.6 24 733-756 97-120 (160)
254 1fp2_A Isoflavone O-methyltran 20.3 83 0.0028 33.4 4.6 45 731-778 51-98 (352)
255 3p9c_A Caffeic acid O-methyltr 20.2 59 0.002 35.1 3.5 49 730-778 55-111 (364)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=9.8e-51 Score=488.59 Aligned_cols=435 Identities=18% Similarity=0.244 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhHHHHhh
Q 003120 366 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTI 445 (846)
Q Consensus 366 ~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~~~l~~RLLhpG~~T~dIL~~YIs~Ikal~~L 445 (846)
..|-.++..|+.|-.++|..|+++ .+...|..|+++.-...++..-+.+.+. .||+.+ .+.|+-..|--..|
T Consensus 257 ~~Yl~~~e~rl~eE~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~-~lL~~~-~~~dL~~mY~L~~r----- 328 (759)
T 2hye_C 257 PEYLNHVSKRLEEEGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLD-HLLDEN-RVPDLAQMYQLFSR----- 328 (759)
T ss_dssp HHHHHHHHHHHHHTHHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHH-HHHTTT-CHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHhcC-CHHHHHHHHHHHcc-----
Confidence 558889999999999999999998 6999999999988776665444444566 477755 78888888865544
Q ss_pred cCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHHhhh
Q 003120 446 DPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQAWI 524 (846)
Q Consensus 446 DPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~~~~ 524 (846)
.|.| |+.++.+++.|+++++ ..||. +.++ +...++.|++...+ +.....+|+.|..|....+.+|+
T Consensus 329 v~~~--l~~l~~~~~~~I~~~g---~~iv~---~~~~-----~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~ 395 (759)
T 2hye_C 329 VRGG--QQALLQHWSEYIKTFG---TAIVI---NPEK-----DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFE 395 (759)
T ss_dssp STTH--HHHHHHHHHHHHHHHH---HHHHS---CGGG-----TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred Ccch--HHHHHHHHHHHHHHHh---HHHhc---Cccc-----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2444 8999999999999999 55642 2211 23577788877666 45556678888777777788999
Q ss_pred hcccCCC-CCCCCCC-------CCCCCc------cchhhHHHhHhhhcCCHHHHHHHHHHHHHHHHccCCCCChHHHHHH
Q 003120 525 NAVCWEP-DPVEADP-------LKGSRN------RRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRT 590 (846)
Q Consensus 525 ~~~nW~P-dPvda~p-------~~~~k~------~k~lD~I~~Lf~il~sKDvF~~eYr~lLAkRLL~~~s~s~d~E~~~ 590 (846)
.++|+.+ .|++... .++.|+ +..+|.|+.||+|+++||+|+++|+++||+|||..++++.|.|+.|
T Consensus 396 ~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~ 475 (759)
T 2hye_C 396 TFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSM 475 (759)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 9999975 3444211 122221 3568899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCccccceeEEeeccCCCCCCCCCCcccChH
Q 003120 591 LELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEALIVPGH 670 (846)
Q Consensus 591 LelLK~rfG~~~l~k~EvMLkDI~~Skrln~~fk~~~~~~~~~~~~~~~~~l~~~~~~v~ILS~~fWP~~~~~~~~LP~e 670 (846)
|++||.+||.+++++|++||+||..|++++..|+++..+.. ....+++++.|||+++||.++..++.+|++
T Consensus 476 i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~---------~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~ 546 (759)
T 2hye_C 476 LSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS---------DSGPIDLTVNILTMGYWPTYTPMEVHLTPE 546 (759)
T ss_dssp HHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------CCCCCEEEEEEEETTTSCCCCCCCCCCCHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------CCCCCceEEEEeCCCCCCCCCCCCCcCCHH
Confidence 99999999999999999999999999999999998764210 112478999999999999999889999999
Q ss_pred HHHHHHHHHhhhhccCCCceEEeecCCCceEEEEEECCceeEEEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHH
Q 003120 671 IDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSR 750 (846)
Q Consensus 671 L~~~~e~F~k~Y~~~k~~RkL~W~~~LG~veLel~f~dr~~el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r 750 (846)
|+..++.|++||.++|+||+|+|.++||+|+|+++|++++++++|||+||+||++||+.++||++||++.|||+++.|++
T Consensus 547 l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r 626 (759)
T 2hye_C 547 MIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRR 626 (759)
T ss_dssp HHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--hCCccccc-CCC-CCCCCeEEEecCCCCCCCCCCCCCCcccccCCCCCCcccccCHHHHHhccccccchhhH
Q 003120 751 RINFWI--SKGIIKES-VGT-GSNDHLYNLVEGMVDSSKNGDNTGSCEELLGGDEDGERSVASVEDQIRNEMTVYEPTLF 826 (846)
Q Consensus 751 ~L~~wv--~~gVL~e~-~g~-~~~~d~f~vNe~f~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~e~q~~ee~~v~w~~~f 826 (846)
+|++|+ +.|||.+. .|+ ..++|+|+||++|+++..+++..... .. +...+. ..+.+.-.+.+.....+ .
T Consensus 627 ~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~---~~-e~~~e~-~~t~~~v~~dR~~~i~A--a 699 (759)
T 2hye_C 627 TLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQ---MK-ETVEEQ-VSTTERVFQDRQYQIDA--A 699 (759)
T ss_dssp HHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGG---GC-CCHHHH-HHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEecccc---cc-ccchhh-hhhHHHHHHHHHHHHHH--H
Confidence 999999 56899753 343 45789999999999988876432111 10 100010 11111112233345677 8
Q ss_pred HHHHhhCcccc
Q 003120 827 LVRYVANILTQ 837 (846)
Q Consensus 827 I~gMLTN~~~~ 837 (846)
||.++..-.+|
T Consensus 700 IVRIMK~rK~l 710 (759)
T 2hye_C 700 IVRIMKMRKTL 710 (759)
T ss_dssp HHHHHHHSSEE
T ss_pred HHHHHhhcCCC
Confidence 99888776665
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=1.3e-47 Score=461.44 Aligned_cols=395 Identities=17% Similarity=0.221 Sum_probs=317.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhHHHHhhcC
Q 003120 368 YETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDP 447 (846)
Q Consensus 368 y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~~~l~~RLLhpG~~T~dIL~~YIs~Ikal~~LDP 447 (846)
|-..+..|+.|--+.+..|-++ .+...|..+++..-...++ +.+.+.|. .||..+ .+.|+-..|--.- --|
T Consensus 244 Yl~~~e~~l~eE~~R~~~yL~~-~t~~~l~~~~~~~Li~~~~-~~l~~~~~-~ll~~~-~~~dL~~my~L~~-----rv~ 314 (760)
T 1ldj_A 244 YMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHL-EIFHTEFQ-NLLDAD-KNEDLGRMYNLVS-----RIQ 314 (760)
T ss_dssp SHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSS-HHHHHHHH-HHHHSC-CTTHHHHHHHHHH-----HST
T ss_pred HHHHHHHHHHHHHHHHHHhcCH-hhHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHcC-CHHHHHHHHHHhC-----cCc
Confidence 6678999999999999988654 3667777777765433221 22334444 566655 6778777763221 124
Q ss_pred cccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHHhhhhc
Q 003120 448 TGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQAWINA 526 (846)
Q Consensus 448 sGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~~~~~~ 526 (846)
.| |+.+...++.|+++.+ ..+|..+.++.. ..+...++.|++...+ +.....+|+.|..|....+.+|+.+
T Consensus 315 ~g--l~~l~~~~~~~i~~~G---~~~v~~~~~~~~---~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~ 386 (760)
T 1ldj_A 315 DG--LGELKKLLETHIHNQG---LAAIEKCGEAAL---NDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRF 386 (760)
T ss_dssp TC--HHHHHHHHHHHHHHHH---HHHHHHHTTSGG---GCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHHHH---HHHHHHhhcccc---cCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56 7889999999999988 777665432110 1122456677776665 4455667887877777778889888
Q ss_pred ccCC---------CCCCCCC-------CCCCCCc------cchhhHHHhHhhhcCCHHHHHHHHHHHHHHHHccCCCCCh
Q 003120 527 VCWE---------PDPVEAD-------PLKGSRN------RRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEI 584 (846)
Q Consensus 527 ~nW~---------PdPvda~-------p~~~~k~------~k~lD~I~~Lf~il~sKDvF~~eYr~lLAkRLL~~~s~s~ 584 (846)
+|=. +.+++-. ..+++|+ +..++.|+.||+|+++||+|+++|+++||+|||..++++.
T Consensus 387 iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~ 466 (760)
T 1ldj_A 387 INNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASD 466 (760)
T ss_dssp HHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCH
T ss_pred hcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCh
Confidence 8854 2333311 1123332 3567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCccccceeEEeeccCCCCCCCCCC
Q 003120 585 DSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEA 664 (846)
Q Consensus 585 d~E~~~LelLK~rfG~~~l~k~EvMLkDI~~Skrln~~fk~~~~~~~~~~~~~~~~~l~~~~~~v~ILS~~fWP~~~~~~ 664 (846)
|.|+.||++||.+||.+++++|++||+||..|++++.+|+++..+. . ..++++++.|||+++||.++..+
T Consensus 467 d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~---------~-~~~~~~~v~VLs~~~WP~~~~~~ 536 (760)
T 1ldj_A 467 DAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS---------E-PLDLDFSIQVLSSGSWPFQQSCT 536 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------C-CCSSEEEEEEEETTTSCCCCCSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------c-CCCCCeeEEecCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999876420 0 12378999999999999998889
Q ss_pred cccChHHHHHHHHHHhhhhccCCCceEEeecCCCceEEEEEECCceeEEEecHHHHHHHHHhcCCCcccHHHHHHHhCCC
Q 003120 665 LIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVP 744 (846)
Q Consensus 665 ~~LP~eL~~~~e~F~k~Y~~~k~~RkL~W~~~LG~veLel~f~dr~~el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~ 744 (846)
+.+|++|+..++.|++||.++|+||+|+|.|+||+|+|+++|.+++++++|||+||+||++||+.++||+++|++.|||+
T Consensus 537 ~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~ 616 (760)
T 1ldj_A 537 FALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIK 616 (760)
T ss_dssp CCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccc-cc-----CCC-CCCCCeEEEecCCCCCCCCCCC
Q 003120 745 VDVLSRRINFWISKGIIK-ES-----VGT-GSNDHLYNLVEGMVDSSKNGDN 789 (846)
Q Consensus 745 ~~~L~r~L~~wv~~gVL~-e~-----~g~-~~~~d~f~vNe~f~~~~~~~~~ 789 (846)
++.|+++|++|++.|||. .+ .|+ ..++++|++|.+|+++..++..
T Consensus 617 ~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i 668 (760)
T 1ldj_A 617 MDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNI 668 (760)
T ss_dssp HHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCC
T ss_pred HHHHHHHHHHHHHCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEe
Confidence 999999999999999998 43 332 4578999999999999888654
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=8.2e-44 Score=397.62 Aligned_cols=229 Identities=14% Similarity=0.241 Sum_probs=206.6
Q ss_pred cchhhHHHhHhhhcCCHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHhhhhCC--ChhHHHHHHHHHHHHHHHHHHH
Q 003120 545 RRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGE--SSMQRCEIMLNDLIDSKRTNAN 622 (846)
Q Consensus 545 ~k~lD~I~~Lf~il~sKDvF~~eYr~lLAkRLL~~~s~s~d~E~~~LelLK~rfG~--~~l~k~EvMLkDI~~Skrln~~ 622 (846)
+..+|.++.||+|+++||+|+++|+++||+|||..++++.|.|+.||++|| +||. +++++|++||+||..|++++.+
T Consensus 33 e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK-~cG~~~~ft~kle~M~kDi~~S~~l~~~ 111 (382)
T 3dpl_C 33 EAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQA 111 (382)
T ss_dssp HHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999 9997 9999999999999999999999
Q ss_pred HHHHHHhhhccCCCcccCCccccceeEEeeccCCCCCCC-CCCcccChHHHHHHHHHHhhhhccCCCceEEeecCCCceE
Q 003120 623 IKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ-DEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVK 701 (846)
Q Consensus 623 fk~~~~~~~~~~~~~~~~~l~~~~~~v~ILS~~fWP~~~-~~~~~LP~eL~~~~e~F~k~Y~~~k~~RkL~W~~~LG~ve 701 (846)
|+++..+. ......+++++.|||++|||.++ ..++.+|++|+..++.|++||.++|+||+|+|.|+||+|+
T Consensus 112 f~~~~~~~--------~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~ 183 (382)
T 3dpl_C 112 FKEMHKNN--------KLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGI 183 (382)
T ss_dssp HHHHTCCC----------CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHHHHHTTSSSEEEEECGGGCEEE
T ss_pred HHHHHhhc--------CCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhcCCCCEEEEecCcccEE
Confidence 99875321 00112368999999999999984 6799999999999999999999999999999999999999
Q ss_pred EEEEECCceeEEEecHHHHHHHHHhcCC--CcccHHHHHHHhCCCHHHHHHHHHHHHh-----CCcccccCC----C-CC
Q 003120 702 LELQFDDRAMQFTVAPIHAAIIMQFQDQ--TSWTSKNLAAAVGVPVDVLSRRINFWIS-----KGIIKESVG----T-GS 769 (846)
Q Consensus 702 Lel~f~dr~~el~VS~~QAaILl~Fn~~--~~~Ti~EL~~~lgm~~~~L~r~L~~wv~-----~gVL~e~~g----~-~~ 769 (846)
|++++.+++++|+|||+||+||++||+. ++||++||++.|||+.+.|+++|++|+. .|||...+. + ..
T Consensus 184 l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~ 263 (382)
T 3dpl_C 184 ITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFT 263 (382)
T ss_dssp EEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCC
T ss_pred EEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCC
Confidence 9999999999999999999999999986 7999999999999999999999999985 368865431 1 35
Q ss_pred CCCeEEEecCCCC
Q 003120 770 NDHLYNLVEGMVD 782 (846)
Q Consensus 770 ~~d~f~vNe~f~~ 782 (846)
++|+|+||++|++
T Consensus 264 ~~d~f~~N~~F~~ 276 (382)
T 3dpl_C 264 EGTLFSVNQEFSL 276 (382)
T ss_dssp TTCEEEECTTCCE
T ss_pred CCCEEEEcCCCcC
Confidence 6799999999986
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=98.25 E-value=7.5e-08 Score=82.90 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.7
Q ss_pred HhccccccchhhHHHHHhhCcccchhh
Q 003120 814 IRNEMTVYEPTLFLVRYVANILTQKSL 840 (846)
Q Consensus 814 ~~ee~~v~w~~~fI~gMLTN~~~~~~~ 840 (846)
++|+|+|||+ ||+|||||+++| ||
T Consensus 2 ~ee~~~v~w~--yI~GMLtN~~sl-pl 25 (74)
T 1ldd_A 2 YELTLQRSLP--FIEGMLTNLGAM-KL 25 (74)
T ss_dssp CHHHHHHHHH--HHHHHHHHHCSE-EH
T ss_pred cHHHHHHHHH--HHHHHHhcCCCC-CH
Confidence 4678999999 999999999999 76
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=96.72 E-value=0.24 Score=54.32 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhHHHHhh
Q 003120 366 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTI 445 (846)
Q Consensus 366 ~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~~~l~~RLLhpG~~T~dIL~~YIs~Ikal~~L 445 (846)
.-|-..+..|+.|--+.+..|-++. +...|..++++.-...++-.-+.+.+. .||..+ .+.|+-..|--. --
T Consensus 208 ~~Yl~~ve~rl~eE~~R~~~yL~~~-T~~~l~~~~e~~LI~~h~~~ll~~~~~-~lL~~~-~~~dL~~mY~L~-----~r 279 (354)
T 4a64_A 208 PEYLHHVNKRLEEEADRLITYLDQT-TQKSLIATVEKQLLGEHLTAILQKGLN-NLLDEN-RIQDLSLLYQLF-----SR 279 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHTGGGHHHHHHHHHH-HHHHTT-CHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC-CHHHHHHHHHHH-----cc
Confidence 3477889999999999999997664 788888888877655554443334444 556555 777776666322 22
Q ss_pred cCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHHhhh
Q 003120 446 DPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQAWI 524 (846)
Q Consensus 446 DPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~~~~ 524 (846)
-|.| ++.+...++.|+++.| ..||. +.++ +...++.|++...+ +.....+|+.|..|....+.+|+
T Consensus 280 v~~g--l~~l~~~~~~~I~~~G---~~iv~---~~~~-----~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~ 346 (354)
T 4a64_A 280 VRGG--VQVLLQQWIEYIKAFG---STIVI---NPEK-----DKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFE 346 (354)
T ss_dssp STTH--HHHHHHHHHHHHHHHH---HHHHH---SCCS-----SSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHHHHHHH---HHHHc---Cccc-----hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456 7889999999999999 77764 3221 24688999998877 56667789988888888888999
Q ss_pred hcccCCC
Q 003120 525 NAVCWEP 531 (846)
Q Consensus 525 ~~~nW~P 531 (846)
.++|-+|
T Consensus 347 ~fiN~~~ 353 (354)
T 4a64_A 347 TFINKRP 353 (354)
T ss_dssp TC-----
T ss_pred HHhCCCC
Confidence 8988655
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=96.56 E-value=0.12 Score=56.79 Aligned_cols=145 Identities=20% Similarity=0.204 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHH---HHHHHhhccCCCChHHHHHHHHHHhHHH
Q 003120 366 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI---SALKYRLLTAGASTNDILHQYVSTIKAL 442 (846)
Q Consensus 366 ~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~---~~l~~RLLhpG~~T~dIL~~YIs~Ikal 442 (846)
.-|-..+..|+.|--+.+..|-++ .+...|..++++.-...++-.-+. +.|. .||..+ .+.|+-..|--.
T Consensus 214 ~~Yl~~ve~rl~eE~~R~~~yL~~-~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~-~lL~~~-~~~dL~~mY~L~---- 286 (364)
T 4eoz_B 214 SVYIKKVEARINEEIERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLV-HMLKNG-KTEDLGCMYKLF---- 286 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCG-GGHHHHHHHHHHHHTTTTHHHHHTCTTTSHH-HHTTTT-CHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHhCC-CHHHHHHHHHHH----
Confidence 347778999999999999888654 378888888887665555443332 3443 566555 677776666322
Q ss_pred HhhcCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHH
Q 003120 443 RTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQ 521 (846)
Q Consensus 443 ~~LDPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~ 521 (846)
---|.| |+.+...++.|+++.| ..||....+. ..+...++.|++...+ +.....+|+.|..|....+.
T Consensus 287 -~rv~~g--l~~l~~~~~~~I~~~G---~~iv~~~~~~-----~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~ 355 (364)
T 4eoz_B 287 -SRVPNG--LKTMCECMSSYLREQG---KALVSEEGEG-----KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAG 355 (364)
T ss_dssp -TTSTTH--HHHHHHHHHHHHHHTC-------------------------------------------------------
T ss_pred -hhcccc--HHHHHHHHHHHHHHHH---HHHHhCcccc-----CChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 123455 7889999999999999 7775433211 1234578889988877 66777789888888887788
Q ss_pred hhhhccc
Q 003120 522 AWINAVC 528 (846)
Q Consensus 522 ~~~~~~n 528 (846)
+|+.++|
T Consensus 356 af~~fiN 362 (364)
T 4eoz_B 356 DFEYFLN 362 (364)
T ss_dssp -------
T ss_pred HHHHhhc
Confidence 8887776
No 7
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.15 Score=57.24 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHH---HHHHHhhccCCCChHHHHHHHHHHhHHH
Q 003120 366 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI---SALKYRLLTAGASTNDILHQYVSTIKAL 442 (846)
Q Consensus 366 ~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~---~~l~~RLLhpG~~T~dIL~~YIs~Ikal 442 (846)
.-|-..+..|+.|--+.+..|-++ .+...|..+++..-...++-.-+. +.|. .||..+ .+.|+-..|--.
T Consensus 231 ~~Yl~~ve~rL~eE~~R~~~yL~~-sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~-~lL~~~-~~~dL~~mY~L~---- 303 (410)
T 4ap2_B 231 SVYIKKVEARINEEIERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLV-HMLKNG-KTEDLGCMYKLF---- 303 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCG-GGHHHHHHHHHHHHTGGGHHHHHTCTTTSHH-HHHHTT-CHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHhCC-CHHHHHHHHHHH----
Confidence 347788999999999999998665 378888888887655444332222 2332 344444 666666666322
Q ss_pred HhhcCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHH
Q 003120 443 RTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQ 521 (846)
Q Consensus 443 ~~LDPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~ 521 (846)
---|.| |+.+...++.|+++.| ..||....+. ..+...++.|++...+ +.....+|+.|..|....+.
T Consensus 304 -~rv~~g--l~~L~~~~~~~I~~~G---~~iv~~~~~~-----~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~ 372 (410)
T 4ap2_B 304 -SRVPNG--LKTMCECMSSYLREQG---KALVSEEGEG-----KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAG 372 (410)
T ss_dssp -TTSTTH--HHHHHHHHHHHHHHHH---HHHHHC-----------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred -hhcccc--HHHHHHHHHHHHHHHH---HHHHhccccc-----cChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 123455 7889999999999999 7776533211 1233577888888777 56667789888888888889
Q ss_pred hhhhcccCCCCCCC
Q 003120 522 AWINAVCWEPDPVE 535 (846)
Q Consensus 522 ~~~~~~nW~PdPvd 535 (846)
+|+.++|-+|..++
T Consensus 373 AF~~fiN~~~~spE 386 (410)
T 4ap2_B 373 DFEYFLNLNSRSPE 386 (410)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHcCCCCCHH
Confidence 99999998775335
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.99 E-value=0.2 Score=42.87 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=43.7
Q ss_pred HHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 721 AIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 721 aILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.|+..+.+....|..||++.+|++...+++.|..|.+.|++.....+......|.++..
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 45666666677999999999999999999999999999999743211112345666543
No 9
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.48 E-value=0.28 Score=42.61 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
++.+..|+..+.+....|+.||++.+|++...+.+.|..|.+.|++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5788889999888778999999999999999999999999999999653
No 10
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.28 E-value=0.16 Score=43.36 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEecHHHHHHHHHhcCC--CcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccC
Q 003120 713 FTVAPIHAAIIMQFQDQ--TSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~--~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+.+++-+..||..+.+. ..+|++||++.+ +++...+.|.|..|.+.|++....
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35688899999999875 579999999999 999999999999999999997643
No 11
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.59 E-value=0.19 Score=44.00 Aligned_cols=51 Identities=10% Similarity=0.309 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..|+..+......|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 17 ~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468899999999977778999999999999999999999999999999753
No 12
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=90.94 E-value=0.63 Score=40.77 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
++.+..||....+ ...|+.||++.+|++...+.++|..|...|++.....+ ....|+++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g--~~~~y~l~~ 81 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA--QTVYYTLKS 81 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT--TCCEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC--CEEEEEECH
Confidence 4667788888876 78999999999999999999999999999999654311 134677654
No 13
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=90.92 E-value=0.23 Score=42.99 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=38.8
Q ss_pred HHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 722 IIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 722 ILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
|+...+++...+++||++.+++++..+++-|..|.++|.|+..
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 5666778889999999999999999999999999999998654
No 14
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=90.84 E-value=0.4 Score=41.39 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=34.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
...|+.||++.+|++...+++.|..|.++|+|+...|
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 6789999999999999999999999999999976654
No 15
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=90.76 E-value=0.32 Score=54.07 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC---CchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhHH
Q 003120 365 YFAYETLQDLRIAKLFEIIVDYPE---SSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKA 441 (846)
Q Consensus 365 ~~~y~~l~~lRi~ElFdIIv~yPd---S~pai~DLr~cL~~~~~r~~Lv~~f~~~l~~RLLhpG~~T~dIL~~YIs~Ika 441 (846)
-.-|-..+..|+.|--+.+..|-+ +..+...|..++++.-...++ +.+...+. .||..+ .+.|+-..|--.=|
T Consensus 227 ~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~-~~ll~~~~-~lL~~~-~~~dL~~mY~L~~r- 302 (391)
T 2wzk_A 227 VQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFK-ETILAECQ-GMIKRN-ETEKLHLMFSLMDK- 302 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGH-HHHHTTHH-HHHHTT-CHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHcC-CHHHHHHHHHHHcc-
Confidence 355888999999999999998866 235788888888876554442 22222343 555555 67777766632211
Q ss_pred HHhhcCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhH
Q 003120 442 LRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDK 520 (846)
Q Consensus 442 l~~LDPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k 520 (846)
-|.| |+.+...++.|+++.| ..+|....+... ..+...++.|++...+ +.....+|..|..|....+
T Consensus 303 ----v~~g--l~~l~~~~~~~I~~~G---~~~v~~~~~~~~---~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~ 370 (391)
T 2wzk_A 303 ----VPNG--IEPMLKDLEEHIISAG---LADMVAAAETIT---TDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARD 370 (391)
T ss_dssp ----STTC--SHHHHHHHHHHHHHHH---HHHHHHHGGGTT---TCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----Cccc--HHHHHHHHHHHHHHHH---HHHHHhcccccc---CCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2456 7899999999999999 555543221100 1122467788887777 5666778988888888888
Q ss_pred HhhhhcccC
Q 003120 521 QAWINAVCW 529 (846)
Q Consensus 521 ~~~~~~~nW 529 (846)
.+|+.++|-
T Consensus 371 ~af~~fiN~ 379 (391)
T 2wzk_A 371 KAYKAVVND 379 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCC
Confidence 888888774
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.58 E-value=0.28 Score=45.52 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=46.2
Q ss_pred EEecHHHHHHHHHhcCCCc--ccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTS--WTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~--~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+++.|..|+..+...+. +|..||++.++++...+.+.|..|..+|++...
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4578999999998876665 999999999999999999999999999999653
No 17
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.43 E-value=0.17 Score=43.50 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=46.1
Q ss_pred EecHHH-HHHHHHhcCCC---cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 714 TVAPIH-AAIIMQFQDQT---SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 714 ~VS~~Q-AaILl~Fn~~~---~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
.+++-+ ..||..+.+.. ..|..|||+.+|++...+++.|..|.+.|++....++ ...|.++.
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~---~~~W~i~~ 75 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT---PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSS---SCEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC---CCceEecC
Confidence 344433 55655555544 8999999999999999999999999999999764321 25677653
No 18
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.42 E-value=0.57 Score=41.11 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=47.1
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
++.+..||..+ ....++.+|++.+|++...+.++|..|...|++.... +.|.+++.
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC------CEEEECCC
Confidence 56677788877 4569999999999999999999999999999997643 28888764
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=89.66 E-value=0.54 Score=43.53 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=47.1
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+|+.|..||......+ .|..+|++.+|++...+.+.|..|.++|++...
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 468999999999999888 999999999999999999999999999999754
No 20
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.62 E-value=0.31 Score=43.15 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 722 IIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 722 ILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
|+...+.+...++.||++.+++++..+++-|..|.++|+|+..
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5666677889999999999999999999999999999998653
No 21
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.33 E-value=0.63 Score=40.48 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCC---cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 719 HAAIIMQFQDQT---SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 719 QAaILl~Fn~~~---~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
+-.||..+.+.. ..|..+||+.+|++...++++|..|...|++....++ ...|.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~---~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT---PPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSS---SCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC---CCeeEEeCc
Confidence 455666665555 8999999999999999999999999999999764332 257777654
No 22
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.32 E-value=0.44 Score=41.69 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=43.4
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..+|..+-. ...+|..||++.+|++...+.+.|..|.+.|++...
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 457778777766544 678999999999999999999999999999999754
No 23
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.32 E-value=0.64 Score=41.28 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=47.9
Q ss_pred eEEEecHHHHHHHHHhcC--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 711 MQFTVAPIHAAIIMQFQD--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 711 ~el~VS~~QAaILl~Fn~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
....+++.|..|+....+ .+.++..+|+..++++...+.+.|..|.++|+++...
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 345678899999988876 6689999999999999999999999999999997543
No 24
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=88.41 E-value=0.44 Score=42.87 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=47.0
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHH-HhCCCHHHHHHHHHHHHhCCccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAA-AVGVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~-~lgm~~~~L~r~L~~wv~~gVL~ 762 (846)
..++..|+.||......+..|..+|++ .++|+...+-+++..|+++|++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 457899999999998888999999999 99999999999999999999998
No 25
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.28 E-value=0.9 Score=41.80 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=45.9
Q ss_pred EecHHHHHHHHHh-cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQF-QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~F-n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||... ...+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 3678899999888 77788999999999999999999999999999999654
No 26
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=88.24 E-value=0.62 Score=43.21 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=47.5
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 478999999999988889999999999999999999999999999999654
No 27
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=87.96 E-value=0.81 Score=43.27 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+.+..||...+.....|+.+|++.+|++...+.+.|..|.+.|+++..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 4567889999998889999999999999999999999999999999753
No 28
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.73 E-value=0.68 Score=42.32 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=46.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 368999999999988888999999999999999999999999999999653
No 29
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=87.60 E-value=1.1 Score=41.29 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+++.|..||.... ....|..+|++.++++...+.+.|..|.++|++...
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 5889999999988 888999999999999999999999999999999653
No 30
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.49 E-value=0.97 Score=42.39 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=47.0
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 40 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 368999999999988888999999999999999999999999999999654
No 31
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.44 E-value=0.79 Score=38.06 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCC-CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 718 IHAAIIMQFQDQ-TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 718 ~QAaILl~Fn~~-~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
..-.||..|.+. ..+|..||++.+|++...+.+.|+.|...|++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 344577777654 4699999999999999999999999999999754
No 32
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=87.42 E-value=0.62 Score=43.59 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=42.9
Q ss_pred EEEecHHHHHHHHHhc---C--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 712 QFTVAPIHAAIIMQFQ---D--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 712 el~VS~~QAaILl~Fn---~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+-.+.-|..|++++- + ....|.++||+.+|++...+.++|..|.++|+|...
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3457788877776553 2 233799999999999999999999999999999654
No 33
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=87.18 E-value=0.52 Score=43.69 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=44.6
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+|+.|+.||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 4588999999999988889999999999999999999999999999999754
No 34
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=87.16 E-value=1.3 Score=40.86 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=41.5
Q ss_pred ecHHHHHHHHHhc-CCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQ-DQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn-~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+++.|..++.... ..+..|..+|++.+|++...+.+.|..|.++|++...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5677776665543 3467999999999999999999999999999999754
No 35
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.10 E-value=0.7 Score=42.86 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=46.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|+.||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 28 ~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 468999999999887778999999999999999999999999999999754
No 36
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=86.96 E-value=0.79 Score=42.55 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 588999999999988889999999999999999999999999999999654
No 37
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=86.74 E-value=1.2 Score=40.97 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC-CCCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV-GTGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~-g~~~~~d~f~vNe 778 (846)
++.+..||..+......|+.+|++.+|++...+.++|..|...|++.... | ....|+++.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g---r~~~y~l~~ 101 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG---KLALYSLGD 101 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CCEEEESC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC---CEEEEEECH
Confidence 45666788877756679999999999999999999999999999986532 2 124577654
No 38
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=86.65 E-value=0.79 Score=40.12 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=44.8
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
++...-..||....... .|+.||++.+|++...++++|..|...|++....+. .-.++++.
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~---PP~W~~~~ 74 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDI---PPRWFMTT 74 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSS---SCEEESCC
T ss_pred chHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC---CCcceecc
Confidence 34344445555555444 999999999999999999999999999999775442 23555543
No 39
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.62 E-value=0.62 Score=40.39 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=43.4
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
.++.+..||..+......|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 14 ~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3678888888776566899999999999999999999999999999964
No 40
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=86.57 E-value=1.1 Score=40.94 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=45.4
Q ss_pred EecHHHHHHHHHhcCCC--cccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQT--SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~--~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+ ..|..+|++.++++...+.+.+..|.++|++...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 36889999998887766 7999999999999999999999999999999653
No 41
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=86.51 E-value=1 Score=41.83 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=46.7
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|..+|++...
T Consensus 37 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 468999999999887778999999999999999999999999999999654
No 42
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=86.46 E-value=0.72 Score=42.66 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=46.7
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 468999999998887788999999999999999999999999999999654
No 43
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.31 E-value=0.86 Score=43.21 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
+++.+..||...++....|+.+|++.+|++...+.+.|+.|.+.|+++.
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5778889999888888899999999999999999999999999999954
No 44
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=86.21 E-value=0.73 Score=42.13 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 468899999999877778999999999999999999999999999998653
No 45
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.21 E-value=1 Score=41.31 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=45.5
Q ss_pred EecHHHHHHHHHhcCCC--cccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQT--SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~--~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||....... ..|..+|++.++++...+.+.+..|.++|++...
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 46889999999887654 8999999999999999999999999999999653
No 46
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.15 E-value=0.92 Score=41.53 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 478899999998887778999999999999999999999999999998653
No 47
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=86.05 E-value=0.92 Score=42.79 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 478999999999887788999999999999999999999999999999654
No 48
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=85.93 E-value=0.84 Score=42.68 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
.+++.|..||......+..|..+|++.++++...+.+.+..|.++|++..
T Consensus 38 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 36899999999988878899999999999999999999999999999975
No 49
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.93 E-value=0.66 Score=43.26 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
++.+..||..++.....++.+|++.+|++...+.+.|+.|...|+++..
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 4567788888887788999999999999999999999999999999643
No 50
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.71 E-value=0.98 Score=42.61 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=44.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++..+-.||...++....|+.+|++.+|++...+.+.|+.|.+.|+++.
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4567778888888888899999999999999999999999999999964
No 51
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=85.59 E-value=0.79 Score=42.94 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=46.5
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 478999999999887789999999999999999999999999999999754
No 52
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=85.46 E-value=0.74 Score=40.31 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=46.0
Q ss_pred EecHHHHHHHHHhcCCCcccHHHH----HHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNL----AAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL----~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+| ++.++++...+.+.|..|.++|++...
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468889999999988888999999 899999999999999999999999653
No 53
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=85.44 E-value=1.9 Score=37.91 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
++....||....+ ...++.||++.+|++...+.++|..|...|++..... .....|++++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN--IKQIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS--SSCCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe--CCEEEEEECcH
Confidence 4566677777755 5689999999999999999999999999999964331 12356777664
No 54
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=85.43 E-value=1.3 Score=40.70 Aligned_cols=51 Identities=4% Similarity=0.135 Sum_probs=45.8
Q ss_pred EecHHHHHHHHHhcCC--CcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQ--TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~--~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||...... +..|..+|++.++++...+.+.|..|.++|++...
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5789999999887666 78999999999999999999999999999999654
No 55
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=85.33 E-value=1.3 Score=46.11 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=51.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.+++.|..||..+.....+|..||++.+|++...+.+.|+.|.+.|++.... ....|.+.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~ 210 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKG----KDRKVELNEL 210 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TTTEEEECHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC----CccEEEECHH
Confidence 4577899999988777789999999999999999999999999999997642 1246776543
No 56
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.29 E-value=0.94 Score=42.79 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=46.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+.+|..+|++.++++...+.+.|..|.++|++...
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 368999999999887788999999999999999999999999999999653
No 57
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.27 E-value=0.87 Score=41.94 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 478999999998887778999999999999999999999999999998653
No 58
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.17 E-value=0.8 Score=41.97 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 468999999998887778999999999999999999999999999999653
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.14 E-value=0.73 Score=42.09 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 368999999999888788999999999999999999999999999998653
No 60
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=85.10 E-value=0.99 Score=42.21 Aligned_cols=50 Identities=4% Similarity=0.130 Sum_probs=46.1
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 68899999998887788999999999999999999999999999999654
No 61
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=85.05 E-value=0.66 Score=44.10 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=45.0
Q ss_pred EEEecHHHHHHHHHhcC-----CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 712 QFTVAPIHAAIIMQFQD-----QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 712 el~VS~~QAaILl~Fn~-----~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++-+|.-++.+|+++.. ....|.++||+.+|+++..+.+.|+.|+++|+|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46688889888877654 45679999999999999999999999999999865
No 62
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=84.74 E-value=1.2 Score=40.73 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=45.5
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+|+.|+.||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 68899999998887778999999999999999999999999999998653
No 63
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=84.70 E-value=1 Score=44.11 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=46.1
Q ss_pred eEEEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 711 MQFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 711 ~el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
......+.+..||...+.....|+.+|++.+|++...+.+.|.-|.+.|+++.
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 34557888889999998888999999999999999999999999999999964
No 64
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.67 E-value=0.99 Score=42.88 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=45.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
.++..+..||...++....|+.+|++.+|++...+.+.|+-|.+.|+++.
T Consensus 5 ~ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 35677888999998888999999999999999999999999999999974
No 65
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.63 E-value=0.8 Score=42.21 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 368999999999887788999999999999999999999999999998653
No 66
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.55 E-value=0.84 Score=43.37 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=46.8
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|+.||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 368999999999888889999999999999999999999999999999654
No 67
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=84.52 E-value=1.1 Score=40.33 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=44.9
Q ss_pred EecHHHHHHHHHhcCC------CcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQ------TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~------~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
-+++.|.+++..+... ..|++.+|++.++|+...|.+.|..|...|++...
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 4789999998866543 67999999999999999999999999999998653
No 68
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.49 E-value=1.1 Score=42.69 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
++..+..||...+.....|+.+|++.+|++...+.+.|..|.+.|+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56778889999988889999999999999999999999999999999653
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=84.31 E-value=0.98 Score=41.95 Aligned_cols=51 Identities=8% Similarity=0.157 Sum_probs=46.2
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 468899999998887778999999999999999999999999999998653
No 70
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=84.23 E-value=1.1 Score=42.56 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=44.9
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++..+-.||..+++....|+.+|++.+|++...+.+.|+.|.+.|+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5677888999999888999999999999999999999999999999964
No 71
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=84.13 E-value=1.1 Score=42.90 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=46.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.+..|.++|++...
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 578999999998887778999999999999999999999999999999653
No 72
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.11 E-value=1.1 Score=41.87 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=46.5
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 478999999999887778999999999999999999999999999998653
No 73
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=83.97 E-value=1.3 Score=37.49 Aligned_cols=51 Identities=8% Similarity=0.155 Sum_probs=45.3
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhC----CCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVG----VPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lg----m~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||....+....|..||++.++ ++...+.+.|..|.++|++...
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999887777899999999997 7899999999999999999654
No 74
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.82 E-value=1.1 Score=41.51 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=46.5
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||..... ....|..+|++.+|++...+.+.+..|.++|++...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 478999999998887 788999999999999999999999999999999654
No 75
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=83.75 E-value=0.94 Score=42.98 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=46.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 50 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 368899999998887778999999999999999999999999999999754
No 76
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.64 E-value=1 Score=42.32 Aligned_cols=51 Identities=6% Similarity=0.052 Sum_probs=46.2
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||.........|..+|++.++++...+.+.|..|.++|++...
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 468999999998877778999999999999999999999999999999653
No 77
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=83.63 E-value=1.3 Score=43.34 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=46.7
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
..++..+..||...+.....|+.||++.+|+++..+.+.|+.|.+.|+++.
T Consensus 23 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 457889999999999888999999999999999999999999999999965
No 78
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.51 E-value=1.2 Score=41.07 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=45.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+++.|+.||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 67889999988877778999999999999999999999999999998653
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=83.38 E-value=1.3 Score=42.64 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=45.7
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|+.||..... .+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 367899999998876 667999999999999999999999999999999754
No 80
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=83.20 E-value=1.3 Score=40.98 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=45.5
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+. |..+|++.++++...+.+.|..|.++|++...
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 578999999998887777 99999999999999999999999999998653
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.01 E-value=1.4 Score=42.22 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=44.7
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++..+..||...++....|+.||++.+|++...+.+.|..|.+.|+++.
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 5677888898888888899999999999999999999999999999974
No 82
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=82.96 E-value=0.86 Score=42.62 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=45.7
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
.+|+.|..||... ..+..|..+|++.++++...+.+.+..|.++|++..
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 5789999999999 778999999999999999999999999999999975
No 83
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.93 E-value=1.3 Score=39.45 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
++.+..||..+ .....++.+|++.+|++...+.+.|..|...|++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence 56777888887 4456899999999999999999999999999999643
No 84
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=82.75 E-value=1.7 Score=38.82 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=41.2
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
++.+..|+..+. ....++.+|++.+|++...+.++|..|...|++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 466777777776 456899999999999999999999999999998643
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=82.65 E-value=2 Score=41.41 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 718 IHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 718 ~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
....||...+.....|+.+|++.+|+++..+++.|+-|...|+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 4556888889888999999999999999999999999999999874
No 86
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.24 E-value=3.1 Score=39.54 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..+|.++|++.+++|+..+++.|..|.+.|++....|. ++-|.+..
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~---~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGA---KGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSS---SSEEEESS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCC---CCCeeecC
Confidence 46999999999999999999999999999999766552 34677754
No 87
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.06 E-value=0.93 Score=42.84 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=45.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|+.||......+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 47 ~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp TCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 467788889988877788999999999999999999999999999999653
No 88
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=81.89 E-value=3.2 Score=38.20 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 729 QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 729 ~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
...+|..+|++.+|+|...+++.|..|.+.|++....|. ++.|.+...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~---~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA---YGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCC---CCceEeCCC
Confidence 456899999999999999999999999999998765431 246887654
No 89
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=81.71 E-value=3.6 Score=40.06 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 719 HAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 719 QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.+.+.+.-+. ...+|.++||+.+++|+..+++.|..|.+.|++....|. ++-|.+...
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~---~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA---HGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECST---TCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC---CCceEecCC
Confidence 3334344333 346999999999999999999999999999999876652 346777553
No 90
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=81.56 E-value=1.3 Score=40.89 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=45.7
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+++.|..||......+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 68899999998887778999999999999999999999999999999654
No 91
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=81.55 E-value=1.6 Score=45.62 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 720 AAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 720 AaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
..||..|.+ ...+|+.||++.+|++...+.|.|+.|+..|+|.... ++..|.+-..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE----GARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS----SSSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHH
Confidence 347788986 4679999999999999999999999999999997653 1357887554
No 92
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=80.92 E-value=2.1 Score=41.77 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
++.+.+.-+....+|.++||+.+++|+..|++.|..|.+.|++....|. ++-|.+..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~---~GGy~Lar 72 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK---NGGYQLDL 72 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECST---TCEEECCS
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCC---CCCeEecC
Confidence 4444454455556999999999999999999999999999999765542 34566654
No 93
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=80.78 E-value=2.2 Score=40.30 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=41.0
Q ss_pred EecHHHHHHHHHhcCC-----CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 714 TVAPIHAAIIMQFQDQ-----TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~-----~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
-+|+.|+.||...... ..+|..+|++.++++...+.+.+..|.++|+++.
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 3688999998877654 3589999999999999999999999999999854
No 94
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=79.91 E-value=2.8 Score=36.32 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHH-HHHHHHHHHHhCCccccc-CCCCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVD-VLSRRINFWISKGIIKES-VGTGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~-~L~r~L~~wv~~gVL~e~-~g~~~~~d~f~vNe 778 (846)
...+--||.+.......|..+|++.+||+.. .++++|..|...|++... .|+ ..|.+.+
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gR----P~w~LT~ 70 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTP----PIWHLTD 70 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSS----CEEEECH
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCC----CCeEeCH
Confidence 3456667777777778999999999999999 999999999999999643 222 2777653
No 95
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=79.76 E-value=1.8 Score=40.31 Aligned_cols=51 Identities=8% Similarity=0.170 Sum_probs=43.9
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||..... .+.+|..+|++.++++...+.+.+..|.++|++...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 367899999987753 446899999999999999999999999999999754
No 96
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=79.73 E-value=2.6 Score=36.24 Aligned_cols=45 Identities=7% Similarity=0.098 Sum_probs=39.2
Q ss_pred HHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 722 IIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 722 ILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|.++.+.+..|..+||.++|++...+.+.|-.|.++|.+...++
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCC
Confidence 456777777799999999999999999999999999999876554
No 97
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=79.69 E-value=1.1 Score=42.21 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHh-cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQF-QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~F-n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||... ...+..|..+|++.++++...+.+.+..|.++|++...
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 4789999999998 56778999999999999999999999999999999754
No 98
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=79.61 E-value=0.96 Score=42.14 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=39.7
Q ss_pred EecHHHHHHHHHhcCC--CcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQ--TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~--~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|+.||...... +..|..+|++.++++...+.+.+..|.++|++...
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 4688999999887765 78999999999999999999999999999999754
No 99
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=79.16 E-value=3.2 Score=39.51 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
++.+.+.-+....+|..+|++.+++|+..+++.|..|.+.|++....| .+-|.+...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG----~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG----PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC----CCceEeCCC
Confidence 334444433445689999999999999999999999999999976554 245776554
No 100
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=78.98 E-value=2.3 Score=43.79 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHhcCCC-cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 721 AIIMQFQDQT-SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 721 aILl~Fn~~~-~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.||..|.+.. .+|+.||++.+|++...+.+.|..|...|++.... ++..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALG----PAGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECG----GGCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHH
Confidence 4777887654 69999999999999999999999999999997643 1247877543
No 101
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=78.79 E-value=2.3 Score=41.75 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=45.0
Q ss_pred ecHHHHHHHHHhcC--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQD--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+|+.|..||..... ....|..+|++.++++...+.+.|..|.++|++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 78999999988765 458999999999999999999999999999999654
No 102
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=78.61 E-value=2.5 Score=38.59 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=48.1
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc-CCCCCCCCeEEEecC
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES-VGTGSNDHLYNLVEG 779 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~-~g~~~~~d~f~vNe~ 779 (846)
..+.+..||..+.+ ...++.+|++.+|++...+.++|.-|...|++... .| ..-.|++++.
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g---r~~~y~l~~~ 80 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG---RQVRYALADS 80 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS---SSEEEEESSH
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC---CEEEEEEChH
Confidence 46777888887764 46899999999999999999999999999998643 22 1346777753
No 103
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=78.59 E-value=2.2 Score=40.18 Aligned_cols=51 Identities=4% Similarity=0.129 Sum_probs=43.4
Q ss_pred EecHHHHHHHHHh--cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQF--QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~F--n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
-+|+.|+.||... ++...+|..+|++.++++...+.+.+..|.++|++...
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 3678888887755 44567999999999999999999999999999999654
No 104
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=77.92 E-value=1.7 Score=39.07 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 717 PIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 717 ~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+..||..+.+ ...|+.||++.+|++...+.+.|..|...|++...
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 345566666664 67899999999999999999999999999999643
No 105
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=76.90 E-value=1.8 Score=43.44 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=46.4
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||......+..|..+|++.++++...+.+.|..|..+|++...
T Consensus 45 gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 468999999998877778999999999999999999999999999999654
No 106
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=76.55 E-value=2.3 Score=44.73 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHhcCCC-cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 720 AAIIMQFQDQT-SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 720 AaILl~Fn~~~-~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..||..|.+.. .+|+.||++.+|+|...+.|.|..|+..|.|.... +..|.+-.
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~-----~~~Y~LG~ 87 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA-----DGTLRIGP 87 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT-----TSEEEECT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC-----CCcEEehH
Confidence 34888898654 69999999999999999999999999999997653 24677744
No 107
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=76.38 E-value=2.4 Score=38.99 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=50.9
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHh--CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAV--GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~l--gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
+.+..-.||.........|+.+|++.+ +++...+.++|.-|...|++.... ...|.+.+.
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~-----rg~Y~LT~~ 72 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLA-----NGVYVITEE 72 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECS-----TTCEEECHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecC-----CceEEECch
Confidence 567788889888776789999999999 999999999999999999997642 138888753
No 108
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=76.10 E-value=2.4 Score=36.84 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCC-cccHHHHHHHhCCCHHH-HHHHHHHHHhCCccc
Q 003120 718 IHAAIIMQFQDQT-SWTSKNLAAAVGVPVDV-LSRRINFWISKGIIK 762 (846)
Q Consensus 718 ~QAaILl~Fn~~~-~~Ti~EL~~~lgm~~~~-L~r~L~~wv~~gVL~ 762 (846)
-+..+|..+.... ..|..+|++.++++... +.+.|..|.++|++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 3455666666665 79999999999999999 999999999999997
No 109
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=75.96 E-value=3.1 Score=37.53 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=41.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++.|..||..+.+ ...++.+|++.+|++...+.++|..|...|++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4678888888776 6789999999999999999999999999998754
No 110
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=75.82 E-value=1.8 Score=39.12 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=45.6
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhC----CCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVG----VPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lg----m~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||.........|..+|++.++ ++...+.+.|..|.++|++...
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 57899999998887777899999999999 7899999999999999999654
No 111
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=75.78 E-value=2.6 Score=38.17 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=46.1
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhC----CCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVG----VPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lg----m~~~~L~r~L~~wv~~gVL~e~ 764 (846)
..+|+.|..|+...-+.+..|..+|++.++ ++...+.+.|..|.++|++...
T Consensus 6 ~~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 357899999999888778899999999997 5799999999999999999653
No 112
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=75.57 E-value=1.9 Score=41.19 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=42.3
Q ss_pred EecHHHHHHHHHhcC--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||..... ....|..+|++.++++...+.+.|..|.++|++...
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 368899999988876 458999999999999999999999999999999653
No 113
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=75.57 E-value=3.9 Score=38.14 Aligned_cols=51 Identities=8% Similarity=0.153 Sum_probs=45.6
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhC----CCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVG----VPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lg----m~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|..||...-+ .+..|..+|++.++ ++...+.+.|..|.++|++...
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 368999999998877 57899999999998 8999999999999999999654
No 114
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=75.32 E-value=2.7 Score=38.20 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC-CCCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV-GTGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~-g~~~~~d~f~vNe 778 (846)
++....||....+ ...++.+|++.+|++...+.++|..|...|++.... | ....|+++.
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g---r~~~y~l~~ 76 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG---RVRTCAIEK 76 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC---CEEEEEECH
Confidence 5667778877764 668999999999999999999999999999996432 2 124677765
No 115
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=75.02 E-value=4.7 Score=38.18 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.+.+.+.-+.. . |.++|++.+++|+..|++.|..|.+.|++....| .+-|.+...
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG----~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG----VPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS----SSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC----CCCceecCC
Confidence 33444443443 5 9999999999999999999999999999976654 234666543
No 116
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=74.11 E-value=4.2 Score=41.88 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=44.0
Q ss_pred HHHHHHhcCCC-cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 720 AAIIMQFQDQT-SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 720 AaILl~Fn~~~-~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..||..|.+.. .+|+.||++.+|++...+.+.|..|.+.|++.... +..|.+..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~-----~~~Y~lg~ 65 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK-----DKRYVPGY 65 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT-----TSCEEECT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECC-----CCcEEECH
Confidence 35777887654 69999999999999999999999999999997642 24677644
No 117
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=74.09 E-value=4.9 Score=35.86 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHh-CCCHHHHHHHHHHHHhCCccccc
Q 003120 717 PIHAAIIMQFQDQTSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 717 ~~QAaILl~Fn~~~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+...||.... ....++.||++.+ |++...+.+.|.-|...|++...
T Consensus 14 ~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~ 61 (107)
T 2hzt_A 14 KWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRI 61 (107)
T ss_dssp TTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34455665554 4678999999999 99999999999999999999653
No 118
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.05 E-value=4.9 Score=38.00 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=44.3
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|+.|+.||..... .+..+..+|++.++++...+.+.+..|.++|++...
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 478999999988764 456788999999999999999999999999998643
No 119
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=73.45 E-value=5.8 Score=36.46 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=41.2
Q ss_pred EEecHHHHHHHHHh----cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQF----QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~F----n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
..+++.|.-+|..+ ......|+.+|++.+|++...+.+.|+.|.+.|++...
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 34666666655544 24567899999999999999999999999999998754
No 120
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=72.80 E-value=6.3 Score=36.24 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
++.+..||....+ ...++.+|++.+|++...+.++|..|.+.|++..
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4566677777764 5789999999999999999999999999999864
No 121
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=72.34 E-value=4.4 Score=42.12 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=44.2
Q ss_pred HHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 721 AIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 721 aILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
.||..|.. ...+|+.||++.+|++...+.+.|..|...|++..... +.|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~-----~~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRAD-----GSYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTT-----SCEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC-----CeEEecHH
Confidence 46777864 46899999999999999999999999999999976531 27887543
No 122
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=72.15 E-value=5.8 Score=39.61 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=43.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.++.+..||.... ....|+.+|++.+|++...+.+.|..|...|++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4677888888887 468999999999999999999999999999999654
No 123
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=71.42 E-value=5.8 Score=41.06 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=45.6
Q ss_pred HHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCC
Q 003120 720 AAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 720 AaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
..||..|.. ...+|+.||++.+|++...+.+.|+.|+..|++.... ..|.+...+
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~------~~Y~Lg~~~ 72 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG------GRWSLTPRV 72 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC------CEEEEcHHH
Confidence 357888875 4579999999999999999999999999999997642 478876543
No 124
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=71.27 E-value=4.9 Score=41.88 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=45.4
Q ss_pred HHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCC
Q 003120 721 AIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 721 aILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
.||..|.. ...+|+.||++.+|++...+.+.|..|+..|++.... ..|.+-..+
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~------~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG------SAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS------SEEEECGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC------CEEEEcHHH
Confidence 47888875 4679999999999999999999999999999997642 578886543
No 125
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.83 E-value=8.5 Score=36.42 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=51.1
Q ss_pred EEecHHHHHHHHHhcC-CCcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 713 FTVAPIHAAIIMQFQD-QTSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~-~~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
+.+|+-..+||..+.+ ...+|.+||.+.+ +++..++-|+|..|+..|++...... ++...|..+
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~~ 87 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG-DASSRFDFV 87 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT-TSCCEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeC-CCceEEECC
Confidence 4678888999988865 4579999999999 89999999999999999999764321 123567765
No 126
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=68.91 E-value=4.1 Score=36.26 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHh-cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 721 AIIMQF-QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 721 aILl~F-n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.|+..+ ...+.+|..+|++.+|++...++++|..|...|++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345444 44546999999999999999999999999999998654
No 127
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=68.52 E-value=3.6 Score=35.81 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=39.4
Q ss_pred EecHHHHHHHHHhcC-CCc---ccHHHHHHHhCCCHHHHHHHHHHHHhCCccc
Q 003120 714 TVAPIHAAIIMQFQD-QTS---WTSKNLAAAVGVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~---~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~ 762 (846)
.++.-+..||+.+-. ... +|..+|++.++++...+.+.|..|.++|++.
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 345666667766532 233 8999999999999999999999999999993
No 128
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=66.79 E-value=5 Score=36.12 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHh-CCCHHHHHHHHHHHHhCCccccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.++...||....+ ...++.+|++.+ +++...+.+.|.-|...|++...
T Consensus 21 ~~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~ 69 (112)
T 1z7u_A 21 GKWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRE 69 (112)
T ss_dssp STTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4455566665543 578999999999 99999999999999999999643
No 129
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=66.59 E-value=7.4 Score=35.92 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=35.2
Q ss_pred HhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 725 QFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 725 ~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
........|+.+|++.+|++...+.+.|..|...|++....
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 33445679999999999999999999999999999996543
No 130
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=66.11 E-value=7.7 Score=36.21 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=40.2
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHh-CCCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e 763 (846)
-..+...||.... ....++.||++.+ |++...+.+.|.-|...|++..
T Consensus 33 ~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 33 TSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp HSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEE
Confidence 3556666776655 4678999999999 7999999999999999999964
No 131
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=65.23 E-value=11 Score=35.55 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC-CCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG-TGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g-~~~~~d~f~vNe 778 (846)
..+...||.... ....++.||++.+|++...+.+.|.-|...|++..... ... ...|.+.+
T Consensus 23 ~~w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~ 84 (146)
T 2f2e_A 23 DGWSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTD 84 (146)
T ss_dssp SSSHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECH
T ss_pred CchHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECc
Confidence 344445555443 35789999999999999999999999999999965432 112 34566654
No 132
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=65.19 E-value=10 Score=35.59 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHh-CCCHHHHHHHHHHHHhCCccccc
Q 003120 717 PIHAAIIMQFQDQTSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 717 ~~QAaILl~Fn~~~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+...||.... ....++.||++.+ |++...|.+.|.-|...|++...
T Consensus 26 kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~ 73 (131)
T 4a5n_A 26 KWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHRE 73 (131)
T ss_dssp SSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEE
Confidence 34455666554 5678999999999 99999999999999999999643
No 133
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.79 E-value=7.5 Score=36.36 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=50.9
Q ss_pred EEecHHHHHHHHHhcCC--CcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 713 FTVAPIHAAIIMQFQDQ--TSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~--~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
+.+|+-..+||..+.+. ..+|.+||.+.+ +++..++-|+|..|+..|++.+.... .+...|.++
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~~ 84 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFD-GGHAVFELA 84 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSS-SSSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeC-CCceEEEeC
Confidence 46788889999988754 579999999999 89999999999999999999764321 123567764
No 134
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=64.68 E-value=7.3 Score=35.13 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=39.4
Q ss_pred ecHHHHHHHHHhcCCCccc--HHHHHHHh-CCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWT--SKNLAAAV-GVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~T--i~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
..++...||....+ ...+ +.||++.+ |++...+.++|..|...|++...
T Consensus 25 ~~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 25 GKKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp HSTTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34556667766653 3445 99999999 99999999999999999999654
No 135
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=64.63 E-value=6.2 Score=37.87 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=47.4
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC-CCCCCCCeEEEec
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV-GTGSNDHLYNLVE 778 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~-g~~~~~d~f~vNe 778 (846)
++....||.... ....|+.+|++.+|++...+.++|.-|...|++.... |+ .-.|+++.
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr---~~~y~lt~ 116 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGR---FRYYRLDP 116 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECH
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC---EEEEEECh
Confidence 578888888887 4679999999999999999999999999999996432 21 23566654
No 136
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=64.61 E-value=10 Score=38.17 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC---CCCCCCeEEEecC
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG---TGSNDHLYNLVEG 779 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g---~~~~~d~f~vNe~ 779 (846)
++.+..||.... ....++.+|++.+|++...+.++|.-|...|++..... .....-.|+++..
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 577788888775 45789999999999999999999999999999964321 1122346666554
No 137
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=63.21 E-value=15 Score=32.50 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 720 AAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 720 AaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
+-||..... . .+..+|+..+|+++..+++.+.+|.++|++.... +.|.+-+
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~------~~~~LT~ 61 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG------KQYMLTK 61 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECH
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC------CeeEECh
Confidence 445555553 3 8999999999999999999999999999998754 2477643
No 138
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=62.56 E-value=2.3 Score=38.24 Aligned_cols=52 Identities=8% Similarity=0.114 Sum_probs=44.0
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhC----CCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVG----VPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lg----m~~~~L~r~L~~wv~~gVL~e~ 764 (846)
..+|+.|..||...-+.+..|..||++.++ ++...+.+.|..|.++|++...
T Consensus 31 ~~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 346788888888777677899999999997 4689999999999999999653
No 139
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.47 E-value=9.3 Score=34.20 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=46.3
Q ss_pred EecHHHHHHHHHhcC--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 714 TVAPIHAAIIMQFQD--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.++..|..|+....+ ...++..+|...++|+...+.+.|..|..+|+++..+
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 568899999888876 5678999999999999999999999999999998654
No 140
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=62.46 E-value=6 Score=35.49 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 721 AIIMQFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 721 aILl~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.|+..+...+.+ +..+|++.+|++...++++|.-|.+.|++....
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 344555555666 999999999999999999999999999996544
No 141
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=62.44 E-value=8.8 Score=42.82 Aligned_cols=52 Identities=12% Similarity=0.124 Sum_probs=47.4
Q ss_pred EEecHHHHHHHHHhcCC--CcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQ--TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~--~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+|+.|..||....++ +.+|..+|++.++++...+.+.|..|.++|++...
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 45799999999998877 88999999999999999999999999999998653
No 142
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=62.43 E-value=13 Score=39.92 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc-CCCCCCCCeEEEecC
Q 003120 717 PIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES-VGTGSNDHLYNLVEG 779 (846)
Q Consensus 717 ~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~-~g~~~~~d~f~vNe~ 779 (846)
.-+..|+.+.++...+|.++|++.++++...+++.|+.|...|++.+. .+ .-|.+...
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g-----~GY~l~~~ 63 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG-----KGYSLPEP 63 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETT-----TEEECSSC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecC-----CCcEEeec
Confidence 456678888888888999999999999999999999999999987543 32 25666544
No 143
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=62.38 E-value=2.6 Score=40.79 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=44.7
Q ss_pred EecHHHHHHHHHhcCCCc---ccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 714 TVAPIHAAIIMQFQDQTS---WTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~---~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+++.|..||........ .|..+|++.++++...+.+.|..|.++|++...
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 368899999988876443 999999999999999999999999999999754
No 144
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=61.80 E-value=8.4 Score=34.23 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHh-CCCHHHHHHHHHHHHhCCccccc
Q 003120 718 IHAAIIMQFQDQTSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 718 ~QAaILl~Fn~~~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+-..||.... ....++.||++.+ |++...+.+.|.-|...|++...
T Consensus 26 ~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 72 (107)
T 2fsw_A 26 WTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKK 72 (107)
T ss_dssp SHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEe
Confidence 3344555444 4678999999999 59999999999999999999643
No 145
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=61.72 E-value=7.6 Score=36.06 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=48.0
Q ss_pred EecHHHHHHHHHhcC-CCcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEE
Q 003120 714 TVAPIHAAIIMQFQD-QTSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNL 776 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~-~~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~v 776 (846)
.+|+-..+||..|.+ ...+|.+||.+.+ +++..++-|+|..|+..|++.+.... ++...|..
T Consensus 8 r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~-~~~~~y~~ 75 (131)
T 2o03_A 8 RSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTD-TGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECT-TSCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeC-CCceEEEe
Confidence 457777888888864 4579999999999 89999999999999999999754311 12346665
No 146
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.34 E-value=9.2 Score=36.48 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=50.2
Q ss_pred EEecHHHHHHHHHhcCC--CcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 713 FTVAPIHAAIIMQFQDQ--TSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~--~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
+.+|+-..+||..+.+. ..+|.+||.+.+ +++..++-|+|..|+..|++...... .+...|.++
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~~ 83 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFE-GGKSVFELS 83 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECG-GGCEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeC-CCceEEEec
Confidence 46788889999988764 479999999998 89999999999999999999754210 123467664
No 147
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=60.02 E-value=11 Score=34.06 Aligned_cols=42 Identities=7% Similarity=0.200 Sum_probs=35.8
Q ss_pred HhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.+ |..+|++.+|++...++++|.-|...|+|...+|
T Consensus 26 ~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 26 SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 34445667 9999999999999999999999999999976554
No 148
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=59.26 E-value=15 Score=29.68 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=35.0
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHh
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWIS 757 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~ 757 (846)
..++-|..|+.++ ....|..||++.+|++...++..+.....
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678888888887 45679999999999999999988877654
No 149
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=58.91 E-value=11 Score=35.92 Aligned_cols=64 Identities=9% Similarity=0.221 Sum_probs=48.8
Q ss_pred EEecHHHHHHHHHhcC-CCcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 713 FTVAPIHAAIIMQFQD-QTSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~-~~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
+.+|+-..+||..|.+ ...+|.+||.+.+ +++..++-|+|..|+..|++.+.... ++...|..+
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~~ 92 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETS-KSGRRYEIA 92 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEET-TTEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeC-CCceEEEec
Confidence 5688888999988865 4579999999998 79999999999999999999754310 122457664
No 150
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=58.36 E-value=9.9 Score=39.51 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=45.7
Q ss_pred EEecHHHHHHHHHhcCCC--cccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQT--SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~--~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+|+.|..||......+ .+|..+|++.++++...+.+.+..|.++|++...
T Consensus 154 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 154 LTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp CSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 357899999999887654 5999999999999999999999999999998653
No 151
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=58.08 E-value=12 Score=34.66 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=36.5
Q ss_pred HhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.+ |..+|++.+|++...++++|.-|...|++...+|
T Consensus 31 ~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 31 VLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 45566777 8999999999999999999999999999976554
No 152
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.83 E-value=3.2 Score=36.72 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=36.0
Q ss_pred HhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.+...+.+ |..+|++.+|++...++++|.-|...|++....|
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555667 9999999999999999999999999999976553
No 153
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=57.82 E-value=11 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCccc
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~ 762 (846)
++.|+...+....+|.+||++.+ +++..++.|.|. ..|+++
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~ 52 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVK 52 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEE
Confidence 34455556667789999999999 999999999999 447773
No 154
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=57.69 E-value=13 Score=34.17 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=34.9
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|.-|...|+|...+|
T Consensus 31 ~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 3344566 7999999999999999999999999999976554
No 155
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=57.37 E-value=12 Score=34.60 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=35.6
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|.-|...|++...+|
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4445667 9999999999999999999999999999976554
No 156
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=56.23 E-value=9.7 Score=39.57 Aligned_cols=52 Identities=8% Similarity=0.113 Sum_probs=46.1
Q ss_pred EEecHHHHHHHHHhcC--CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQD--QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~--~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
+.+|+.|+.||....+ .+..|..+|++.++++...+.+.|..|.++|++...
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 4589999999998866 458999999999999999999999999999998543
No 157
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=55.42 E-value=10 Score=33.30 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
+|....|+..+-.....++.||++.+|++...+.++|.-|.+. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhh
Confidence 5667777744444467999999999999999999999999998 7753
No 158
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=55.23 E-value=15 Score=34.16 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|..|...|++...+|
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 4445667 8999999999999999999999999999976554
No 159
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=54.83 E-value=11 Score=35.32 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=50.9
Q ss_pred eeEEEecHHHHHHHHHhcCC-CcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 710 AMQFTVAPIHAAIIMQFQDQ-TSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 710 ~~el~VS~~QAaILl~Fn~~-~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..-+.+|+-..+||..+.+. ..+|.+||.+.+ +++..++-|+|..|+..|++.+... ..+...|.++.
T Consensus 7 ~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~g~~~Y~~~~ 80 (139)
T 3mwm_A 7 PVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT-AEGESVYRRCS 80 (139)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC-TTSCEEEECCS
T ss_pred CCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc-CCCceEEEECC
Confidence 34467788888999888764 579999999988 6999999999999999999975431 11234676654
No 160
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=54.22 E-value=16 Score=35.78 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCc-ccc
Q 003120 718 IHAAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGI-IKE 763 (846)
Q Consensus 718 ~QAaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gV-L~e 763 (846)
-+..|+...++ ...+|..+|++.+|++...+++.|..|...|+ +..
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34567777764 34599999999999999999999999999998 644
No 161
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=53.98 E-value=19 Score=30.51 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=34.9
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHh
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWIS 757 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~ 757 (846)
..++-|..|+.++ ...+|..|||+.+|++...++..+.....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678888888887 45689999999999999999988876654
No 162
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=53.36 E-value=17 Score=38.26 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=38.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
...|++||++++|+++..+++.|..++..|+|.+.. +.|..+.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~------~~y~~t~ 80 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQA------EGYRLTS 80 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECH
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecC------CEEecCH
Confidence 578999999999999999999999999999997642 5888764
No 163
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.21 E-value=10 Score=35.95 Aligned_cols=64 Identities=13% Similarity=0.298 Sum_probs=49.3
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHh-----CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAV-----GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~l-----gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
+.+|+-..+||..+.+....|.+||.+.+ +++..++-|+|..|+..|++.+.... ++...|.++
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~-~~~~~Y~~~ 83 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLG-HGAPTYHLA 83 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECG-GGCEEEEET
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeC-CCceEEEeC
Confidence 46788888888877665589999999988 78999999999999999999754310 123457664
No 164
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=53.19 E-value=18 Score=38.09 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=38.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
...|++||++.+|+++..+++.|..++..|++.+.. ++.|..+.
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~-----~~~y~~t~ 83 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT-----RDGYANTP 83 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TTEEEECH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC-----CCeEecCH
Confidence 578999999999999999999999999999998753 25788764
No 165
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=53.17 E-value=18 Score=38.65 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=38.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
...|++||++.+|+++..+++-|..++..|+|.+.. +.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~------~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED------GKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC------CeEecCH
Confidence 579999999999999999999999999999998853 4888774
No 166
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=52.92 E-value=15 Score=30.01 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.0
Q ss_pred cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 727 QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 727 n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
+...-+.++..++..|++.+++...|..|.++|+++.
T Consensus 21 ~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 4455678999999999999999999999999999874
No 167
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=52.20 E-value=15 Score=39.10 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=38.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
...|++||++.+|+++..+.+.|..++..|++.+.. ++.|..+..
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~-----~g~y~~t~~ 95 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA-----PGEFVPTEV 95 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-----TTEEEECTT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC-----CCeEEeCHH
Confidence 568999999999999999999999999999998743 257887653
No 168
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=51.98 E-value=17 Score=38.57 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=37.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..|++||++++|+++..+++-|..++..|++.+.. +.|..+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~------~~y~~t~ 97 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG------DAFRNTA 97 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECH
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC------CeeecCH
Confidence 89999999999999999999999999999998863 4677654
No 169
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=51.18 E-value=21 Score=37.62 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=38.2
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
...|++||++++|+++..+++-|..++..|++.+.. .+.|..+.
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~-----~~~y~~t~ 80 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG-----QGVYGLTE 80 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT-----TSBEEECT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC-----CCeEEcCH
Confidence 479999999999999999999999999999998753 25777654
No 170
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.44 E-value=25 Score=28.79 Aligned_cols=41 Identities=5% Similarity=0.081 Sum_probs=33.8
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHh
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWIS 757 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~ 757 (846)
.++-|..|+.++ ...+|..||++.+|++...++..+.....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567777888877 46789999999999999999988876654
No 171
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=50.39 E-value=34 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred EECCceeEEEec--HHHHHH-HHHhcCCCcccHHHHHHHhCCCHHHHHHHH
Q 003120 705 QFDDRAMQFTVA--PIHAAI-IMQFQDQTSWTSKNLAAAVGVPVDVLSRRI 752 (846)
Q Consensus 705 ~f~dr~~el~VS--~~QAaI-Ll~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L 752 (846)
..+++.+ .++ +.+... +.++. ...|..+|++.+|++...+.+.+
T Consensus 6 ~~~g~~~--~l~~~~~~~~~i~~l~~--~g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 6 QVQGVRY--YVESEDDLVSVAHELAK--MGYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp EETTEEE--EECSHHHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred hhccHHH--HHhcCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHH
Confidence 3455555 344 443333 33333 45799999999999999998765
No 172
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.38 E-value=16 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 728 DQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 728 ~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.....|..+|++.+|++...+.+.|..|.+.|++....
T Consensus 51 ~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 51 EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred hCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 33568999999999999999999999999999986543
No 173
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=50.33 E-value=17 Score=39.20 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=38.3
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 729 QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 729 ~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
....|++||++++|+++..+++-|..++..|+|.+.. +.|..+.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~------~~y~~t~ 91 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEE------DRYVLAK 91 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET------TEEEECH
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecC------CEEeccc
Confidence 3579999999999999999999999999999997643 5788764
No 174
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=49.92 E-value=24 Score=30.66 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.6
Q ss_pred EEEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003120 712 QFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISK 758 (846)
Q Consensus 712 el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~ 758 (846)
....|+-|..|+.++- ..+|..||++.+|++...++..+.....+
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3567888999998887 57899999999999999999999877654
No 175
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=49.64 E-value=18 Score=38.73 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=37.3
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCC--eEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDH--LYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d--~f~vNe 778 (846)
...|++||++.+|+++..+.+.|..++..|++.+.. ++ .|..+.
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~-----~~~~~y~~t~ 93 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE-----KQGRPLRPTR 93 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC-----C-CCCCEECT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeC-----CCCeEEEECh
Confidence 568999999999999999999999999999998743 23 677654
No 176
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=49.03 E-value=17 Score=38.65 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.6
Q ss_pred cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccc-ccCC
Q 003120 727 QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIK-ESVG 766 (846)
Q Consensus 727 n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~-e~~g 766 (846)
.....+|..||++.+|++...++|-|..+-+.|+++ ...|
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecC
Confidence 334569999999999999999999999999999996 5544
No 177
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=48.73 E-value=17 Score=37.39 Aligned_cols=54 Identities=15% Similarity=-0.001 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
.+.|++.. .+...|.++|++.+|+++.++..+|..|.+.|++.... +++..+.+
T Consensus 167 ~~~l~~~l-~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~-----~~~~~~~~ 220 (232)
T 2qlz_A 167 LAILHYLL-LNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIN-----DNTVVLDE 220 (232)
T ss_dssp HHHHHHHH-HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEET-----TTEEEECH
T ss_pred HHHHHHHH-hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEec-----CCeEEecH
Confidence 34444443 34788999999999999999999999999999996433 24666544
No 178
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.86 E-value=23 Score=34.91 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=40.2
Q ss_pred ecHHHHHHHHHhcC-----CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 715 VAPIHAAIIMQFQD-----QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 715 VS~~QAaILl~Fn~-----~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.|+-|..||....+ ....|+.||++.+|++...+.++|..|.++|.|....
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 45667666665432 2358999999999999999999999999999987644
No 179
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.85 E-value=21 Score=31.07 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=36.0
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISK 758 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~ 758 (846)
.+++-|..|+.++ ...+|..||++.+|++...++..+.....+
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4788888888887 457899999999999999999888776543
No 180
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=47.82 E-value=33 Score=33.12 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHhc-CC-CcccHHHHHHHhC-CCHHHHHHHHHHHHhCCcccc
Q 003120 717 PIHAAIIMQFQ-DQ-TSWTSKNLAAAVG-VPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 717 ~~QAaILl~Fn-~~-~~~Ti~EL~~~lg-m~~~~L~r~L~~wv~~gVL~e 763 (846)
+....|+...- .. ...|+++|.+.++ ++...|.++|..|+..|++..
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~ 78 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEK 78 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 34455555543 32 3489999999999 999999999999999999974
No 181
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=47.60 E-value=23 Score=39.21 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC-C----CCCCCCeEEEecCC
Q 003120 720 AAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV-G----TGSNDHLYNLVEGM 780 (846)
Q Consensus 720 AaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~-g----~~~~~d~f~vNe~f 780 (846)
..||........+|..||++.+|++...+.+.+..|++.|++.+.. . ...+...|.+|.+.
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCC
Confidence 4466666666789999999999999999999999999999998753 0 01133467777654
No 182
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=47.32 E-value=4 Score=43.02 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=0.0
Q ss_pred ecHHHHHHHHHhcCC---CcccHHHHHHHh-CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEe
Q 003120 715 VAPIHAAIIMQFQDQ---TSWTSKNLAAAV-GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLV 777 (846)
Q Consensus 715 VS~~QAaILl~Fn~~---~~~Ti~EL~~~l-gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vN 777 (846)
.++.|-.|+..+... ..+++++|++++ +++++.++.+|.+|++.|.+...- +++.|...
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTi----Dd~h~k~t 267 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTV----DDDHFKST 267 (270)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccc----cccceeec
Confidence 344566666666554 678999999999 699999999999999999997542 34566543
No 183
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.24 E-value=26 Score=38.31 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=45.9
Q ss_pred HHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC-----CCCCCCeEEEecCC
Q 003120 720 AAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG-----TGSNDHLYNLVEGM 780 (846)
Q Consensus 720 AaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g-----~~~~~d~f~vNe~f 780 (846)
..||.+...+..+|-.||++.+|++...+.+.+..|++.|++.+... ...+...|.+|.+.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCc
Confidence 45777777788899999999999999999999999999999977421 01133457777764
No 184
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=45.89 E-value=20 Score=38.32 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=38.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecC
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~ 779 (846)
...|++||++++|+++..+++-|..++..|+|.+. ++.|..+.-
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~------~~~y~~t~~ 97 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAVRDVVRES------DGRFALTDK 97 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEECTT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEec------CCEEecCHH
Confidence 47899999999999999999999999999999883 257887653
No 185
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=45.13 E-value=27 Score=35.74 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=35.7
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|.-|.+.|+|....|
T Consensus 28 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 69 (243)
T 2wv0_A 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKG 69 (243)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCC
Confidence 4455667 8999999999999999999999999999976654
No 186
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=44.58 E-value=34 Score=34.90 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=36.7
Q ss_pred HhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.+ |..+|++.+|++...++++|.-|.+.|+|...+|
T Consensus 22 ~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 22 QLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp TCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 45556777 8999999999999999999999999999976654
No 187
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.34 E-value=25 Score=25.42 Aligned_cols=33 Identities=0% Similarity=-0.140 Sum_probs=25.5
Q ss_pred HHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHH
Q 003120 721 AIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFW 755 (846)
Q Consensus 721 aILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~w 755 (846)
.|+.++.+ .+|..+|++.+|++...+.+.+.-+
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45555543 5799999999999999998877544
No 188
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=44.15 E-value=19 Score=36.81 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=37.3
Q ss_pred HhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.+...+.++..+|++.+|++...++++|.-|...|++...++
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 566678899999999999999999999999999999976543
No 189
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=43.32 E-value=28 Score=33.31 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=31.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+-|.|+-|.+.|++....
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 5778999999999999999999999999997654
No 190
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.17 E-value=33 Score=35.25 Aligned_cols=44 Identities=9% Similarity=0.204 Sum_probs=38.6
Q ss_pred HHHHhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCC
Q 003120 722 IIMQFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGT 767 (846)
Q Consensus 722 ILl~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~ 767 (846)
|.- +...+.+ |-.+|++.+|++...++++|.-|.+.|+|.. .|+
T Consensus 27 I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~ 71 (248)
T 3f8m_A 27 LDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGR 71 (248)
T ss_dssp HHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETT
T ss_pred HhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCC
Confidence 444 7777788 9999999999999999999999999999987 653
No 191
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=43.01 E-value=25 Score=35.85 Aligned_cols=41 Identities=10% Similarity=0.291 Sum_probs=34.2
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|.-|.+.|+|...+|
T Consensus 27 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 27 YKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp SCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 3445667 8999999999999999999999999999977655
No 192
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=42.48 E-value=19 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 719 HAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 719 QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
|..|+.+.+++..+|++||++.+++++.++|+=|.-|-..+++..
T Consensus 14 ~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~r 58 (190)
T 4a0z_A 14 REAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKR 58 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhhH
Confidence 667888999999999999999999999999999999988776643
No 193
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=42.45 E-value=23 Score=35.53 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.9
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |-.+|++.+|++...++.+|.-|...|++...+|
T Consensus 25 l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 25 FPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4456678 8999999999999999999999999999976654
No 194
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=42.42 E-value=30 Score=33.18 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCC
Confidence 6788999999999999999999999999998754
No 195
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=42.37 E-value=24 Score=41.21 Aligned_cols=59 Identities=8% Similarity=-0.034 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHh-----CCcccccCCCCCCCCeEEEecCC
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWIS-----KGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~-----~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
+..+..||....+...+|..+|++.+|++...+++.|..|++ .|+|.... ++|.+++..
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g------~~y~L~~~~ 492 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD------GVWLLGNAC 492 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET------TEEEECHHH
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC------CEEEECHHH
Confidence 456777887777788999999999999999999999999999 67776542 589998863
No 196
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=41.28 E-value=30 Score=33.36 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+-|.|.-|.+.|++....
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 35788999999999999999999999999997654
No 197
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=41.22 E-value=78 Score=32.20 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=44.5
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+..|..|+..-+....+|..+|+..+|.+....+..|..+...|+|...
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34688888887787889999999999999999999999999999999654
No 198
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=41.09 E-value=32 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 46889999999999999999999999999997654
No 199
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=40.38 E-value=31 Score=34.58 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 722 IIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 722 ILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
|..+-.+....+..+|++.++++...+.+.|.-|.++|++....
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 33333456789999999999999999999999999999986543
No 200
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=40.33 E-value=23 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=37.4
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCe-EEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHL-YNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~-f~vNe 778 (846)
...|++||++++|+++..+++-|..++..|++.+.. ++. |..+.
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~-----~~~~y~~t~ 114 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG-----HDDLFAQNA 114 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS-----STTEEECCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC-----CCceEecCH
Confidence 468999999999999999999999999999998753 245 77553
No 201
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=39.74 E-value=34 Score=35.76 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=35.8
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...++++|.-|.+.|+|...+|
T Consensus 47 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 47 LPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4445667 8999999999999999999999999999976655
No 202
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=38.97 E-value=40 Score=36.28 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHh--cCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc-CCCCCCCCeEEEecC
Q 003120 718 IHAAIIMQF--QDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES-VGTGSNDHLYNLVEG 779 (846)
Q Consensus 718 ~QAaILl~F--n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~-~g~~~~~d~f~vNe~ 779 (846)
..-.||.++ ++...+|-++|++.+|++...+.++++.|-..|+..+. ++ .-|++...
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~-----~GY~L~~~ 63 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNH-----KGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETT-----TEEEEEEC
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCC-----CeEEEecC
Confidence 445567666 45568999999999999999999999999999986543 33 36777653
No 203
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=38.94 E-value=35 Score=32.75 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+.|.|.-|.+.|+|....
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 4668999999999999999999999999998654
No 204
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=38.82 E-value=62 Score=25.91 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=31.4
Q ss_pred ecHHHHHHHHHhc---CCCcccHHHHHHHhCCCHHHHHHHHHHHHh
Q 003120 715 VAPIHAAIIMQFQ---DQTSWTSKNLAAAVGVPVDVLSRRINFWIS 757 (846)
Q Consensus 715 VS~~QAaILl~Fn---~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~ 757 (846)
.++-|..|+.+.- +....|+.|||+.+|++...++..+.--..
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566666655433 235789999999999999999888765543
No 205
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=38.52 E-value=37 Score=33.07 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=31.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+-|.|..|.+.|+|....
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 4778999999999999999999999999998754
No 206
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.40 E-value=22 Score=30.57 Aligned_cols=41 Identities=10% Similarity=0.302 Sum_probs=33.3
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHh
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWIS 757 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~ 757 (846)
.++-|..|+.++ ...+|..||++.+|++...++..+.....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567777777776 35689999999999999999988876654
No 207
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=37.72 E-value=37 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 5778999999999999999999999999997654
No 208
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=37.53 E-value=38 Score=33.75 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=32.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+.|.|.-|.+.|+|....
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcC
Confidence 46789999999999999999999999999998654
No 209
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=37.38 E-value=7 Score=42.34 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~ 762 (846)
+.++.-|..||........+|..+|++.++++...++|.|..|.++|+++
T Consensus 16 ~~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 16 LDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp --------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45667788888888888899999999999999999999999999999985
No 210
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=37.14 E-value=38 Score=33.15 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=31.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||..+|++.+.+-|.|.-|.+.|++....
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC
Confidence 36889999999999999999999999999998654
No 211
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.90 E-value=47 Score=28.19 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=29.9
Q ss_pred ecHHHHHHHHH-h--cCCCcccHHHHHHHhCCCHHHHHHHHHHHH
Q 003120 715 VAPIHAAIIMQ-F--QDQTSWTSKNLAAAVGVPVDVLSRRINFWI 756 (846)
Q Consensus 715 VS~~QAaILl~-F--n~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv 756 (846)
.++-|-.||.+ | .+....|+.||++.+|++...++..+.--.
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555555543 3 233578999999999999999887765443
No 212
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=36.88 E-value=67 Score=33.23 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=52.0
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCC
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
.+.+.-|+.||..-+....+|.++|+..+|.+....+.+|..++..|++-...+. .+...|.+-.-|
T Consensus 150 ~el~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~-~ge~~Yw~P~lf 216 (234)
T 3cuq_A 150 AELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQA-PGEAHYWLPALF 216 (234)
T ss_dssp CCCCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSS-SSSCEEECTTSS
T ss_pred CccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCC-CCcceeecchhh
Confidence 3477899999877777889999999999999999999999999999998654321 123446554333
No 213
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=36.59 E-value=39 Score=33.04 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 45779999999999999999999999999997654
No 214
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.37 E-value=44 Score=29.74 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=27.6
Q ss_pred ecHHHHHHH-HHhc--CCCcccHHHHHHHhCCCHHHHHHHHH
Q 003120 715 VAPIHAAII-MQFQ--DQTSWTSKNLAAAVGVPVDVLSRRIN 753 (846)
Q Consensus 715 VS~~QAaIL-l~Fn--~~~~~Ti~EL~~~lgm~~~~L~r~L~ 753 (846)
+++-|-.|+ +.|- +...+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455454444 4442 34679999999999999998876654
No 215
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=35.36 E-value=42 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+-|.|.-|.+.|++....
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecC
Confidence 4678999999999999999999999999997654
No 216
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=35.14 E-value=31 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=31.7
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+-|.|.-|.+.|++....
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecC
Confidence 36778999999999999999999999999998754
No 217
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=34.88 E-value=33 Score=32.85 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=30.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+.|.|+-|.+.|++....
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4668999999999999999999999999997654
No 218
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.55 E-value=47 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC
Confidence 46789999999999999999999999999998754
No 219
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=33.52 E-value=29 Score=34.47 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=36.7
Q ss_pred HhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.++-.+|++.+|++...++.+|.-|...|++...++
T Consensus 29 ~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 29 ELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp SSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 455567889999999999999999999999999999976554
No 220
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=33.41 E-value=54 Score=32.60 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred HhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.++-.+|++.+|++...++.+|.-|...|++...++
T Consensus 33 ~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 33 TFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp SSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 456677889999999999999999999999999999976554
No 221
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.39 E-value=40 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||+.+|++.+.+.|.|.-|.+.|++....
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECS
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcC
Confidence 5778999999999999999999999999997654
No 222
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=33.05 E-value=47 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCC
Q 003120 718 IHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 718 ~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
+.-.|..+|....-||+.+|.+.|+=|+..|+..|.-. +++...++ ..+.|.+-..|
T Consensus 9 l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~I---a~~~k~g~---~~~~weLKpEy 65 (69)
T 1bby_A 9 VLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEI---GVQNVKGI---HKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHH---CCCBCCTT---CCCBBCCCCSS
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHH---HHHHcCCC---CCCeeeCcHHH
Confidence 34567888999999999999999999999999998866 55544321 12455554444
No 223
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.99 E-value=39 Score=26.25 Aligned_cols=36 Identities=6% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003120 721 AIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISK 758 (846)
Q Consensus 721 aILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~ 758 (846)
-|+.++- ..+|..||++.+|+++..++..+.....+
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3444443 35789999999999999999888776543
No 224
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=32.91 E-value=53 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 731 SWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+|-++||+.+|++.+.+.|.|.-|.+.|++...
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 3567899999999999999999999999999864
No 225
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=32.80 E-value=1.5e+02 Score=24.25 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCC
Q 003120 729 QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGM 780 (846)
Q Consensus 729 ~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f 780 (846)
...+|..|++...|.|.+..+.+|.-+...|-|++.+ ..|++-..+
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRs------SRYrlkphl 61 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRS------SRYRLKPHL 61 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC------CEEEECC--
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhc------cccccCcch
Confidence 4578999999999999999999999999999998764 488876544
No 226
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.73 E-value=33 Score=37.25 Aligned_cols=58 Identities=14% Similarity=0.289 Sum_probs=43.6
Q ss_pred HHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC----CCCCCCeEEEecCCC
Q 003120 723 IMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG----TGSNDHLYNLVEGMV 781 (846)
Q Consensus 723 Ll~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g----~~~~~d~f~vNe~f~ 781 (846)
|.... ...+|-.||++.+|++...+.+.+..|++.|++.+... ...+...|.+|.+..
T Consensus 26 l~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 26 LKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred HHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 43344 56799999999999999999999999999999976421 112345678877643
No 227
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=32.70 E-value=46 Score=36.07 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=43.5
Q ss_pred cHHHHHHHH-----HhcCCCcccHHHHHHHh--CCCHHHHHHHHHHHHhCCcccccCC
Q 003120 716 APIHAAIIM-----QFQDQTSWTSKNLAAAV--GVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 716 S~~QAaILl-----~Fn~~~~~Ti~EL~~~l--gm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
+-=|-.||. .-+....+++.+|++.+ ++++.++|+-|..|-+.|+|..+.|
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 345566666 67778899999999999 9999999999999999999987654
No 228
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.10 E-value=63 Score=25.52 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.3
Q ss_pred ecHHHHHHHHH-hcCCCcccHHHHHHHhCCCHHHHHHHHHHHH
Q 003120 715 VAPIHAAIIMQ-FQDQTSWTSKNLAAAVGVPVDVLSRRINFWI 756 (846)
Q Consensus 715 VS~~QAaILl~-Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv 756 (846)
+++-|-.|+.+ |- ..+|..||++.+|++...+++.+.--.
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666666644 43 358999999999999999887765443
No 229
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.05 E-value=62 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.1
Q ss_pred ecHHHHHHHHH-h--cCCCcccHHHHHHHhCCCHHHHHHHHHH
Q 003120 715 VAPIHAAIIMQ-F--QDQTSWTSKNLAAAVGVPVDVLSRRINF 754 (846)
Q Consensus 715 VS~~QAaILl~-F--n~~~~~Ti~EL~~~lgm~~~~L~r~L~~ 754 (846)
.++-|-.|+.+ | .+....|+.||++.+|++...++..+.-
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35555555543 3 2235789999999999999998876543
No 230
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.90 E-value=43 Score=34.00 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=36.6
Q ss_pred HhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 725 QFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 725 ~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
.|...+.++-.+|++.+|++...++.+|.-|...|++...++
T Consensus 45 ~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 45 TFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp SSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 355567789999999999999999999999999999976554
No 231
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.23 E-value=49 Score=29.26 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=34.7
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhC
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISK 758 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~ 758 (846)
.+|+-|..|+.++- ..+|..|||+.+|++...++..+.....+
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 36777877877764 46899999999999999999888766543
No 232
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=31.05 E-value=54 Score=33.07 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
+|-++||..+|++.+.+.|.|.-|.+.|++....
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 5778999999999999999999999999998654
No 233
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.66 E-value=66 Score=30.91 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=47.9
Q ss_pred EEecHHHHHHHHHhcCC-CcccHHHHHHHh-------CCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 713 FTVAPIHAAIIMQFQDQ-TSWTSKNLAAAV-------GVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~-~~~Ti~EL~~~l-------gm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
+.+|+-..+||..+.+. ...|.+||.+.+ +++..++-|+|..|+..|++.+.... ++...|..+.
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~-~~~~~Y~~~~ 101 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFG-SAGKKYELAN 101 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC------CCEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeC-CCceEEEeCC
Confidence 45688888888877654 678999997765 48899999999999999999765311 1234677764
No 234
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.52 E-value=65 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.563 Sum_probs=29.0
Q ss_pred ecHHHHHHHHH-hcCCCcccHHHHHHHhCCCHHHHHHHHHHHH
Q 003120 715 VAPIHAAIIMQ-FQDQTSWTSKNLAAAVGVPVDVLSRRINFWI 756 (846)
Q Consensus 715 VS~~QAaILl~-Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv 756 (846)
+++-|-.|+.+ |- ..+|+.|||+.+|++...++..+.--.
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45656555554 43 357999999999999999887765443
No 235
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.94 E-value=21 Score=36.81 Aligned_cols=63 Identities=10% Similarity=0.245 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc-c-CCC--CCCCCeEEEecC
Q 003120 716 APIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE-S-VGT--GSNDHLYNLVEG 779 (846)
Q Consensus 716 S~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e-~-~g~--~~~~d~f~vNe~ 779 (846)
++....||.+..+ ...|+.+|++.+|++...+.++|..|...|++.. . .|+ ..+...|+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 4666777777765 6799999999999999999999999999999975 2 221 112345777664
No 236
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.47 E-value=86 Score=27.07 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccc
Q 003120 718 IHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 718 ~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~ 762 (846)
.+-.+.....-..+++++.|++.++++++.+.+.|..++..|-|.
T Consensus 17 ~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~ 61 (84)
T 1ufm_A 17 IEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMN 61 (84)
T ss_dssp HHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 344444455567899999999999999999999999999887663
No 237
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=29.43 E-value=5.7 Score=38.12 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=42.8
Q ss_pred EecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccc
Q 003120 714 TVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIK 762 (846)
Q Consensus 714 ~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~ 762 (846)
.+......|+..+.....++..+|++.+|++...++++|.-|...|++.
T Consensus 10 ~~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp -CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred chhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 3555667778788888889999999999999999999999999999986
No 238
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=29.10 E-value=53 Score=32.48 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.1
Q ss_pred cccHHHHHHHhCCCH-HHHHHHHHHHHhCCcccccC
Q 003120 731 SWTSKNLAAAVGVPV-DVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~~-~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+|-++||+.+|++. +.+.|.|+-|.+.|+|....
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC
Confidence 356789999999999 79999999999999997654
No 239
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=27.89 E-value=50 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHccCCCCChHHHHHHHHHHhhhhCCChhHHHHHHHHHHHH
Q 003120 571 MLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLID 615 (846)
Q Consensus 571 lLAkRLL~~~s~s~d~E~~~LelLK~rfG~~~l~k~EvMLkDI~~ 615 (846)
-+.+|++.....+.+....++.+|+..-|...+...-.|++-|..
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 356788887767778888899999998898889999999887654
No 240
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=27.79 E-value=57 Score=32.85 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=34.4
Q ss_pred HhcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccc
Q 003120 725 QFQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 725 ~Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e 763 (846)
.|...+.+ +-.+|++.+|++...++.+|..|...|++..
T Consensus 21 ~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 21 RLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp SSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 45566778 6779999999999999999999999999976
No 241
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=27.50 E-value=50 Score=36.29 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 723 IMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 723 Ll~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
+..+.++...|.+++++.+|++....++.|..|+..|+|++.++
T Consensus 303 l~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~ 346 (373)
T 3eqx_A 303 VQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp HHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred HHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCC
Confidence 44444566789999999999999999999999999999987643
No 242
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.29 E-value=47 Score=36.34 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 728 DQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 728 ~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
.+...+.+++++.+|++...+++.|..|+..|+|++.+
T Consensus 308 ~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 308 EQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred hCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEec
Confidence 34678999999999999999999999999999998754
No 243
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.12 E-value=60 Score=29.61 Aligned_cols=39 Identities=5% Similarity=0.188 Sum_probs=30.2
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHH
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFW 755 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~w 755 (846)
+++-|-.|+.+| ...+|+.|||+.+|++...++..+.--
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 567777777644 357899999999999999987776543
No 244
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=26.59 E-value=43 Score=35.94 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=37.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
...|++||++.+|+++..+++-|..++..|++..... .+.+.|..++
T Consensus 42 ~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~--~~~~~y~~t~ 88 (353)
T 4a6d_A 42 GPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR--GGKAFYRNTE 88 (353)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECH
T ss_pred CCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc--CccceeeCCH
Confidence 5789999999999999999999999999999975321 1234677654
No 245
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=25.21 E-value=67 Score=27.76 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHHHHhcC-----CCcccHHHHHH--H------hCCCHHHHHHHHHHHHhCC
Q 003120 720 AAIIMQFQD-----QTSWTSKNLAA--A------VGVPVDVLSRRINFWISKG 759 (846)
Q Consensus 720 AaILl~Fn~-----~~~~Ti~EL~~--~------lgm~~~~L~r~L~~wv~~g 759 (846)
|.+|+.+-+ ...+|+-||.+ . -|||++.|+++|+.|+++|
T Consensus 11 a~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~g 63 (79)
T 3htu_A 11 GKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEH 63 (79)
T ss_dssp HHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcC
Confidence 456666643 23579999987 2 2799999999999999987
No 246
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=24.84 E-value=13 Score=34.44 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=34.0
Q ss_pred hcCCCcc-cHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCC
Q 003120 726 FQDQTSW-TSKNLAAAVGVPVDVLSRRINFWISKGIIKESVG 766 (846)
Q Consensus 726 Fn~~~~~-Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g 766 (846)
|...+.+ |..+|++.+|++...+++++.-|...|++...+|
T Consensus 29 ~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 29 YEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp SCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 3445566 8899999999999999999999999999976554
No 247
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=24.80 E-value=79 Score=30.84 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=41.2
Q ss_pred ecHHHHHHHHHhcCCCcccHHHHHHHhC-CCHHHHHHHHHHHHhCCcccc
Q 003120 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVG-VPVDVLSRRINFWISKGIIKE 763 (846)
Q Consensus 715 VS~~QAaILl~Fn~~~~~Ti~EL~~~lg-m~~~~L~r~L~~wv~~gVL~e 763 (846)
..|.-..||.+..+ ...|+.+|++.++ ++...+-++|.-|.+.|++..
T Consensus 21 a~P~Rl~il~~L~~-~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~ 69 (182)
T 4g6q_A 21 HHPLRWRITQLLIG-RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMV 69 (182)
T ss_dssp TSHHHHHHHHHTTT-SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHh-CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEE
Confidence 35677778888864 5789999999996 999999999999999999964
No 248
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.73 E-value=86 Score=27.31 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhC-Ccc
Q 003120 724 MQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISK-GII 761 (846)
Q Consensus 724 l~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~-gVL 761 (846)
...++...||+.+|++.+|++.+++..+|--|... +|-
T Consensus 15 ~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 15 HALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCcee
Confidence 34566679999999999999999999999877765 443
No 249
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.84 E-value=62 Score=27.97 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=37.6
Q ss_pred HHHHHHhcC-CCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC
Q 003120 720 AAIIMQFQD-QTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV 765 (846)
Q Consensus 720 AaILl~Fn~-~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~ 765 (846)
-.||..+.+ ...++..+|++.+|++..+|.++|..|-+.|.+..+.
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPk 68 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS 68 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCC
Confidence 346666655 3578999999999999999999999999988776543
No 250
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=23.41 E-value=1.1e+02 Score=26.24 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHhcCCCcccHHHHHHHhCC-CHHHHHHHHHHHHhCC
Q 003120 723 IMQFQDQTSWTSKNLAAAVGV-PVDVLSRRINFWISKG 759 (846)
Q Consensus 723 Ll~Fn~~~~~Ti~EL~~~lgm-~~~~L~r~L~~wv~~g 759 (846)
-...++...||+.+|+..+|+ +..++..+|--|...+
T Consensus 16 W~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREd 53 (77)
T 2l01_A 16 WEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLRED 53 (77)
T ss_dssp HHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcC
Confidence 345567778999999999999 9999999998777653
No 251
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.06 E-value=70 Score=33.05 Aligned_cols=52 Identities=10% Similarity=0.000 Sum_probs=46.5
Q ss_pred EEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCccccc
Q 003120 713 FTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764 (846)
Q Consensus 713 l~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~ 764 (846)
.+.+..|+.||..-.....+|.++|+..+|.+....+.+|..++..|++-..
T Consensus 163 ~el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD 214 (233)
T 1u5t_A 163 NELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWID 214 (233)
T ss_dssp SCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred CccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4578899999987777889999999999999999999999999999998654
No 252
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=21.66 E-value=1.1e+02 Score=28.18 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=37.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccc--cCCCCCCCCeEEEec
Q 003120 730 TSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKE--SVGTGSNDHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e--~~g~~~~~d~f~vNe 778 (846)
+.-++..|.+.||||..+++..|..|-.-||-.+ ..|.-+..+.|+|..
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~d 82 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRT 82 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEEee
Confidence 4449999999999999999999999998887543 223334456888754
No 253
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.41 E-value=63 Score=30.82 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.3
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHH
Q 003120 733 TSKNLAAAVGVPVDVLSRRINFWI 756 (846)
Q Consensus 733 Ti~EL~~~lgm~~~~L~r~L~~wv 756 (846)
|++||++++|||++.|++.+.-|-
T Consensus 97 TleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 97 SLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHH
Confidence 899999999999999999998773
No 254
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=20.29 E-value=83 Score=33.40 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=36.9
Q ss_pred cccHHHHHHHhCCC---HHHHHHHHHHHHhCCcccccCCCCCCCCeEEEec
Q 003120 731 SWTSKNLAAAVGVP---VDVLSRRINFWISKGIIKESVGTGSNDHLYNLVE 778 (846)
Q Consensus 731 ~~Ti~EL~~~lgm~---~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe 778 (846)
..|++||++++|++ +..+++-|..++..|+|.+.. .+++.|..+.
T Consensus 51 ~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~---~~~~~y~~t~ 98 (352)
T 1fp2_A 51 PISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT---KEEESYALTV 98 (352)
T ss_dssp CEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE---SSSEEEEECH
T ss_pred CccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec---CCCCeEeCCH
Confidence 78999999999995 778999999999999998752 0135788764
No 255
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=20.19 E-value=59 Score=35.06 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=37.4
Q ss_pred CcccHHHHHHHhCC--CHH---HHHHHHHHHHhCCcccccCCCC-CC--CCeEEEec
Q 003120 730 TSWTSKNLAAAVGV--PVD---VLSRRINFWISKGIIKESVGTG-SN--DHLYNLVE 778 (846)
Q Consensus 730 ~~~Ti~EL~~~lgm--~~~---~L~r~L~~wv~~gVL~e~~g~~-~~--~d~f~vNe 778 (846)
...|++||++++|+ ++. .|+|-|..++..|++.+..... .+ ++.|..+.
T Consensus 55 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (364)
T 3p9c_A 55 KSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAP 111 (364)
T ss_dssp CCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECG
T ss_pred CCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCH
Confidence 47999999999998 666 8999999999999998752100 01 35788765
Done!